Psyllid ID: psy2407

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-----
Protein Sequence
MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Secondary Structure (PSIPRED)
ccEEEEEEEEEEcccccccHHHHHHHccccHHHHHHcccEEEccccccccHHHHHHHHHHHHHHHHcccccccccEEEEEEcccccccccHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEEcccccEEEEEEccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcHHHccccc
Secondary Structure Prediction (SSPRO)
ccccEHEEEEEEccccEEcHHHHHHHcccccccEEEEcccccccccccHHHHHHHHHHHHHHHHHHccccHHHccEEEEEcccHEcccHHHHHHHHHHHccccccEEEEccHHcHHHHHHHHHHHHHHHHccccccEEEEEEcHHHHHcccccccccccccccccccccHHHEEEEEcccccEEEEEcccEEEEcHHHHHcccccccccccccHccHHHHHHHHHHHHHHHHHHHHHcccHHccc
Coil and Loop (DISEMBL)
MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQksvslpyedpvsFAINaaaplidnlsnidkNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMewaffepsggagAVAMLIsdkpeifqfdigsngyysfevmdtcrpipdseagnadLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Flexible Loop (DISEMBL)
MIKVGIEAinlyggsvFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Low Complexity Region (SEG)
MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Disordered region (IsUnstruct)
**KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVY***
Disordered Region (DISOPRED)
*IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYK*******
Disordered Region (DISEMBL)
MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Disordered Region (DISPRO)
*IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKII*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYNKK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	245	2.2.26 [Sep-21-2011]
P40830	420	Polyketide biosynthesis 3	yes	N/A	0.959	0.559	0.702	1e-102
P54872	482	Hydroxymethylglutaryl-CoA	yes	N/A	0.902	0.458	0.286	1e-13
P23228	522	Hydroxymethylglutaryl-CoA	yes	N/A	0.893	0.419	0.297	5e-12
P54839	491	Hydroxymethylglutaryl-CoA	yes	N/A	0.906	0.452	0.288	7e-11
Q8JZK9	520	Hydroxymethylglutaryl-CoA	yes	N/A	0.897	0.423	0.273	2e-10
Q01581	520	Hydroxymethylglutaryl-CoA	yes	N/A	0.897	0.423	0.281	2e-10
P17425	520	Hydroxymethylglutaryl-CoA	yes	N/A	0.897	0.423	0.273	2e-10
P13704	520	Hydroxymethylglutaryl-CoA	yes	N/A	0.897	0.423	0.277	3e-10
Q86HL5	468	Hydroxymethylglutaryl-CoA	no	N/A	0.893	0.467	0.288	3e-10
P54868	508	Hydroxymethylglutaryl-CoA	no	N/A	0.885	0.427	0.269	1e-09

>sp|P40830|PKSG_BACSU Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG OS=Bacillus subtilis (strain 168) GN=pksG PE=1 SV=2

 Score =  372 bits (956), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Involved in some intermediate steps for the synthesis of the antibiotic polyketide bacillaene which is involved in secondary metabolism. It catalyzes the aldol condensation between the acetyl group attached to the acyl-carrier-protein AcpK (Ac-AcpK) and a beta-ketothioester polyketide intermediate linked to one of the consecutive thiolation domains of PksL.
Bacillus subtilis (strain 168) (taxid: 224308)
EC: 2EC: .EC: 3EC: .EC: 3EC: .EC: -

>sp|P54872|HMCSA_DICDI Hydroxymethylglutaryl-CoA synthase A OS=Dictyostelium discoideum GN=hgsA PE=1 SV=2

 Score = 77.0 bits (188), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 20/241 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSL--PYEDPVSFAINAAAP 61
           +GI  I +Y  S ++   +L K+  +   ++  L + Q +++     ED  S ++NA   
Sbjct: 7   IGIHGIEVYFPSTYVAQEDLEKFDGVSQGKY-TLGLGQTNMAFCGDREDIYSLSLNAVNN 65

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTA 119
           L+D   N+D NSI  +   +E+ ID  KS+ T +      + N  +   +   ACY  T+
Sbjct: 66  LMDKF-NVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTS 124

Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
            L  A+ ++ S    G  A+V+A DI+ +           E     P+GGAG VAMLI  
Sbjct: 125 ALHNALQWMESSYWDGRNAIVVAGDIAVY-----------EKGPARPTGGAGVVAMLIGP 173

Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQY 237
              I  F+ G  G +   V D  +P  DSE    D  LS+  Y       +  Y K  + 
Sbjct: 174 NAPI-TFESGLRGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEK 232

Query: 238 K 238
           K
Sbjct: 233 K 233

Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|P23228|HMCS1_CHICK Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Gallus gallus GN=HMGCS1 PE=1 SV=1

 Score = 71.6 bits (174), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 71/239 (29%), Positives = 109/239 (45%), Gaps = 20/239 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct: 17  VGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKL 76

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL--GLNRNCRLFELKQACYSCTAG 120
           ++  +++  + I  +   +E+ ID  KS+ T +        N +    +   ACY  TA 
Sbjct: 77  MER-NSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 135

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI-SD 179
           L  AIN+I S    G  ALV+A DI+ +     +           P+GGAGAVAML+ S+
Sbjct: 136 LFNAINWIESSSWDGRYALVVAGDIAVYATGNAR-----------PTGGAGAVAMLVGSN 184

Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
            P IF+   G  G +     D  +P   SE    D  LS+  YL    + +  Y+ ++ 
Sbjct: 185 APLIFER--GLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNKIH 241

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|P54839|HMCS_YEAST Hydroxymethylglutaryl-CoA synthase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERG13 PE=1 SV=1

 Score = 67.8 bits (164), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 70/243 (28%), Positives = 109/243 (44%), Gaps = 21/243 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSL--PYEDPVSFAINAAAP 61
           VGI+ I +Y  +  ++  EL K+  +   ++  + + Q ++S     ED  S ++   + 
Sbjct: 49  VGIKGIQIYIPTQCVNQSELEKFDGVSQGKY-TIGLGQTNMSFVNDREDIYSMSLTVLSK 107

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
           LI +  NID N I  +   +E+ ID  KS+ + +    G N +    +   ACY  T  L
Sbjct: 108 LIKSY-NIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGENTDVEGIDTLNACYGGTNAL 166

Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLIS-DK 180
             ++N+I S    G  A+V+  DI+ +    DK           P+GGAG VAM I  D 
Sbjct: 167 FNSLNWIESNAWDGRDAIVVCGDIAIY----DKGAA-------RPTGGAGTVAMWIGPDA 215

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQYK 238
           P +F     S   Y     D  +P   SE    D   SL  Y+    Q +K Y K+   K
Sbjct: 216 PIVFDSVRAS---YMEHAYDFYKPDFTSEYPYVDGHFSLTCYVKALDQVYKSYSKKAISK 272

Query: 239 IIV 241
            +V
Sbjct: 273 GLV 275

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|Q8JZK9|HMCS1_MOUSE Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Mus musculus GN=Hmgcs1 PE=1 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 18/238 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +D  ++   L Q +       ED  S  +     L
Sbjct: 17  VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKL 76

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
           ++  S +  + I  +   +E+ ID  KS+ + +      + N  +   +   ACY  TA 
Sbjct: 77  MERHS-LSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +  A+N++ S    G  ALV+A DI+ +     +           P+GG GAVA+LI   
Sbjct: 136 VFNAVNWVESSSWDGRYALVVAGDIAIYATGNAR-----------PTGGVGAVALLIGPN 184

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
             +  FD G  G +     D  +P   SE    D  LS+  YL    + +  Y+K+++
Sbjct: 185 APLI-FDRGLRGTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIR 241

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|Q01581|HMCS1_HUMAN Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Homo sapiens GN=HMGCS1 PE=1 SV=2

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 67/238 (28%), Positives = 106/238 (44%), Gaps = 18/238 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct: 17  VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNL 76

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
           ++  +N+  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct: 77  MER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +  A+N+I S    G  ALV+A DI+ +     +           P+GG GAVA+LI   
Sbjct: 136 VFNAVNWIESSSWDGRYALVVAGDIAVYATGNAR-----------PTGGVGAVALLIGPN 184

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
             +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y K++ 
Sbjct: 185 APLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIH 241

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|P17425|HMCS1_RAT Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Rattus norvegicus GN=Hmgcs1 PE=1 SV=1

 Score = 66.2 bits (160), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 65/238 (27%), Positives = 108/238 (45%), Gaps = 18/238 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +D  ++   L Q +       ED  S  +     L
Sbjct: 17  VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQKL 76

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
           ++  +++  + I  +   +E+ ID  KS+ + +      + N  +   +   ACY  TA 
Sbjct: 77  MER-NSLSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +  A+N+I S    G  ALV+A DI+ +     +           P+GG GAVA+LI   
Sbjct: 136 VFNAVNWIESSSWDGRYALVVAGDIAIYASGNAR-----------PTGGVGAVALLIGPN 184

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
             +  FD G  G +     D  +P   SE    D  LS+  YL    + +  Y+K+++
Sbjct: 185 APVI-FDRGLRGTHMQHAYDFYKPDMLSEYPVVDGKLSIQCYLSALDRCYSVYRKKIR 241

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|P13704|HMCS1_CRIGR Hydroxymethylglutaryl-CoA synthase, cytoplasmic OS=Cricetulus griseus GN=HMGCS1 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 66/238 (27%), Positives = 107/238 (44%), Gaps = 18/238 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +D  ++   L Q +       ED  S  +     L
Sbjct: 17  VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQARMGFCTDREDINSLCLTVVQNL 76

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
           ++  S +  + I  +   +E+ ID  KS+ + +      + N  +   +   ACY  TA 
Sbjct: 77  MERNS-LSYDCIGRLEVGTETIIDKSKSVKSNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +  A+N+I S    G  ALV+A DI+ +     +           P+GG GAVA+LI   
Sbjct: 136 VFNAVNWIESSSWDGRYALVVAGDIAIYATGNAR-----------PTGGVGAVALLIGPN 184

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
             +  FD G  G +     D  +P   SE    D  LS+  YL    + +  Y+K+++
Sbjct: 185 APLI-FDRGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIR 241

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Cricetulus griseus (taxid: 10029)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|Q86HL5|HMCSB_DICDI Hydroxymethylglutaryl-CoA synthase B OS=Dictyostelium discoideum GN=hgsB PE=3 SV=1

 Score = 65.9 bits (159), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 69/239 (28%), Positives = 107/239 (44%), Gaps = 20/239 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSL--PYEDPVSFAINAAAP 61
           +GI AI++Y    +++  EL KY K+   ++  + + Q ++S     ED VS A+ +   
Sbjct: 7   IGICAIDIYFPQTYVNQSELKKYDKVSNGKY-TIGLGQTNMSFVGDREDIVSMAMTSVKM 65

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTA 119
           ++   S ID  SI  +   +E+ ID  KS+ + I        N  L   +   ACY  T 
Sbjct: 66  MMSKYS-IDYQSIGRLEVGTETIIDKSKSVKSSIMSLFQEYGNTSLEGVDTLNACYGGTN 124

Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
            L  ++ +I S    G  ALV+  DI+ +                 P+GGAG V MLI  
Sbjct: 125 ALFNSLQWIESSYWDGRYALVVTGDIAVY-----------SKGAARPTGGAGVVTMLIGP 173

Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
              +  FD    G +   V D  +P   SE    D  LS+  YL    + + EYKK+ +
Sbjct: 174 NATLI-FDQSLRGTHMENVNDFYKPDLSSEYPYVDGKLSIECYLRALDKCYLEYKKKFE 231

Condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

>sp|P54868|HMCS2_HUMAN Hydroxymethylglutaryl-CoA synthase, mitochondrial OS=Homo sapiens GN=HMGCS2 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 24/241 (9%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK----SVSLPYEDPVSFAINAA 59
           VGI A+ +Y  + ++D  +L KY  ++  ++   L Q +    SV    ED  S  +   
Sbjct: 54  VGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQ---EDINSLCLTVV 110

Query: 60  APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSC 117
             L++ +  +  +S+  +   +E+ ID  K++ T +      + N  +   +   ACY  
Sbjct: 111 QRLMERI-QLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 169

Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
           TA L  A N++ S    G  A+V+  DI+ +     +           P+GGAGAVAMLI
Sbjct: 170 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNAR-----------PTGGAGAVAMLI 218

Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
             K  +   + G  G +   V D  +P   SE    D  LS+  YL    + +  Y+K++
Sbjct: 219 GPKAPL-ALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKI 277

Query: 236 Q 236
           Q
Sbjct: 278 Q 278

This enzyme condenses acetyl-CoA with acetoacetyl-CoA to form HMG-CoA, which is the substrate for HMG-CoA reductase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 1

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
57117512	430	PedP [symbiont bacterium of Paederus fus	0.955	0.544	0.8	1e-109
308069771	420	polyketide biosynthesis protein pksG [Pa	0.963	0.561	0.724	1e-104
310642835	420	polyketide biosynthesis 3-hydroxy-3-meth	0.963	0.561	0.720	1e-103
291191816	420	BatC [Pseudomonas fluorescens]	0.959	0.559	0.706	1e-102
50812233	420	acetyl-S-AcpK beta-ketothioester polyket	0.959	0.559	0.702	1e-101
449094401	420	acetyl-S-AcpK beta-ketothioester polyket	0.959	0.559	0.702	1e-101
384175457	420	TaC protein [Bacillus subtilis subsp. su	0.959	0.559	0.702	1e-101
443632609	420	TaC protein [Bacillus subtilis subsp. in	0.959	0.559	0.702	1e-101
430758863	420	Polyketide biosynthesis protein PksG [Ba	0.959	0.559	0.702	1e-101
386758442	420	hypothetical protein MY9_1865 [Bacillus	0.959	0.559	0.697	1e-101

>gi|57117512|gb|AAW33975.1| PedP [symbiont bacterium of Paederus fuscipes]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/235 (80%), Positives = 213/235 (90%), Gaps = 1/235 (0%)

Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAP 61
           + VGIEA+NLYGGS F+DV+ELA YRK D  RF+NLLM+QK+V+LPYED VSFAINAA P
Sbjct: 1   MPVGIEAMNLYGGSAFVDVMELAVYRKHDLSRFDNLLMKQKTVALPYEDSVSFAINAAQP 60

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
           LID LS  +K  IEL+ITCSESGIDFGKS+STYIHHYLGLNRNCRLFELKQACYS TAGL
Sbjct: 61  LIDTLSETEKERIELLITCSESGIDFGKSISTYIHHYLGLNRNCRLFELKQACYSGTAGL 120

Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTED-KNELTMEWAFFEPSGGAGAVAMLISDK 180
           QMA+NFI+SKVSPGAKALVIA+D+SRF VT D + ELTM+W FFEPSGGAGA+AML+S+K
Sbjct: 121 QMAVNFIVSKVSPGAKALVIASDLSRFLVTRDEEGELTMDWDFFEPSGGAGAIAMLVSEK 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P+IF+ DIG+NGYY++EVMDTCRPI DSEAGNADLSLLSYLDCC QSFKEYKKRV
Sbjct: 181 PDIFELDIGANGYYTYEVMDTCRPIADSEAGNADLSLLSYLDCCDQSFKEYKKRV 235

Source: symbiont bacterium of Paederus fuscipes

Species: symbiont bacterium of Paederus fuscipes

Superkingdom: Bacteria

>gi|308069771|ref|YP_003871376.1| polyketide biosynthesis protein pksG [Paenibacillus polymyxa E681] gi|305859050|gb|ADM70838.1| Putative polyketide biosynthesis protein pksG [Paenibacillus polymyxa E681]

 Score =  382 bits (982), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 171/236 (72%), Positives = 210/236 (88%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+ VGIEA+N++GGS ++DV+ELA++R+LD  RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVVVGIEAMNVFGGSAYLDVMELAQHRQLDPARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           PL+D LS  +KN IE++ITC+ESGIDFGKS+STYIHHYLGLNRNCRLFELKQACYS TAG
Sbjct: 61  PLVDALSEAEKNRIEMLITCTESGIDFGKSISTYIHHYLGLNRNCRLFELKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +QMA+NFILS+VSPGAKALVIA+DISRF   E  + L+ +W++ EPSGGAGAVAMLIS+ 
Sbjct: 121 IQMAVNFILSQVSPGAKALVIASDISRFIAAEGGDVLSEDWSYAEPSGGAGAVAMLISEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQ 236
           P +FQ D G+NGYY +EVMDTCRPIPDSEAG+ADLSL+SYLDCC Q+F EY+KRVQ
Sbjct: 181 PHVFQIDAGANGYYGYEVMDTCRPIPDSEAGDADLSLMSYLDCCEQAFLEYQKRVQ 236

Source: Paenibacillus polymyxa E681

Species: Paenibacillus polymyxa

Genus: Paenibacillus

Family: Paenibacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|310642835|ref|YP_003947593.1| polyketide biosynthesis 3-hydroxy-3-methylglutaryl-acp synthase pksg [Paenibacillus polymyxa SC2] gi|309247785|gb|ADO57352.1| Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG [Paenibacillus polymyxa SC2] gi|392303667|emb|CCI70030.1| hydroxymethylglutaryl-CoA synthase [Paenibacillus polymyxa M1]

 Score =  379 bits (974), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 170/236 (72%), Positives = 209/236 (88%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+ VGIEA+N++GGS ++DV++LA++R+LD  RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVLVGIEAMNVFGGSAYLDVMQLAQHRQLDPARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           PL+D LS  +KN IE++ITC+ESGIDFGKS+STYIHHYLGLNRNCRLFELKQACYS TAG
Sbjct: 61  PLVDALSEAEKNRIEMLITCTESGIDFGKSISTYIHHYLGLNRNCRLFELKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+VSPGAKALVIA+DISRF   E  + L+ +W++ EPSGGAGAVAMLIS+ 
Sbjct: 121 FQMAVNFILSQVSPGAKALVIASDISRFIAAEGGDVLSEDWSYAEPSGGAGAVAMLISEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQ 236
           P IFQ D G+NGYY +EVMDTCRPIPDSEAG+ADLSL+SYLDCC Q+F EY+KRV+
Sbjct: 181 PHIFQVDAGANGYYGYEVMDTCRPIPDSEAGDADLSLMSYLDCCEQAFLEYQKRVK 236

Source: Paenibacillus polymyxa SC2

Species: Paenibacillus polymyxa

Genus: Paenibacillus

Family: Paenibacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|291191816|gb|ADD82944.1| BatC [Pseudomonas fluorescens]

 Score =  376 bits (966), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 166/235 (70%), Positives = 207/235 (88%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M  VGIEA+N++GG+ ++DV ELA++R+LD+ RF NLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MSLVGIEAMNVFGGTTYLDVAELARHRQLDSARFANLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID +S  +++ IEL+ITC+ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYS TAG
Sbjct: 61  PIIDAMSPAERDRIELLITCTESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMAINFILS+VSPGAKAL++ATDISRF  +E  +ELT +W+F EPS GAGAVA+L+SD+
Sbjct: 121 FQMAINFILSQVSPGAKALIVATDISRFLASEAGSELTEDWSFAEPSAGAGAVALLVSDQ 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P +FQ D+G+NGYY +EVMDTCRP+PDSEAG+ADLSLLSYLDCC  ++ EY KRV
Sbjct: 181 PHVFQVDVGANGYYGYEVMDTCRPMPDSEAGDADLSLLSYLDCCENAYLEYTKRV 235

Source: Pseudomonas fluorescens

Species: Pseudomonas fluorescens

Genus: Pseudomonas

Family: Pseudomonadaceae

Order: Pseudomonadales

Class: Gammaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|50812233|ref|NP_389595.2| acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase [Bacillus subtilis subsp. subtilis str. 168] gi|221309592|ref|ZP_03591439.1| involved in polyketide synthesis [Bacillus subtilis subsp. subtilis str. 168] gi|221313915|ref|ZP_03595720.1| involved in polyketide synthesis [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221318839|ref|ZP_03600133.1| involved in polyketide synthesis [Bacillus subtilis subsp. subtilis str. JH642] gi|221323110|ref|ZP_03604404.1| involved in polyketide synthesis [Bacillus subtilis subsp. subtilis str. SMY] gi|402775958|ref|YP_006629902.1| polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG [Bacillus subtilis QB928] gi|418033136|ref|ZP_12671613.1| polyketide synthesis protein [Bacillus subtilis subsp. subtilis str. SC-8] gi|452914671|ref|ZP_21963298.1| polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG [Bacillus subtilis MB73/2] gi|50402246|sp|P40830.2|PKSG_BACSU RecName: Full=Polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase PksG; Short=HMG synthase gi|32468756|emb|CAB13586.2| acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase [Bacillus subtilis subsp. subtilis str. 168] gi|351469284|gb|EHA29460.1| polyketide synthesis protein [Bacillus subtilis subsp. subtilis str. SC-8] gi|402481139|gb|AFQ57648.1| Acetyl-S-AcpK beta-ketothioester polyketideintermediate [Bacillus subtilis QB928] gi|407959121|dbj|BAM52361.1| acetyl-S-AcpK beta-ketothioester polyketideintermediate transferase [Synechocystis sp. PCC 6803] gi|407964698|dbj|BAM57937.1| acetyl-S-AcpK beta-ketothioester polyketideintermediate transferase [Bacillus subtilis BEST7003] gi|452117091|gb|EME07486.1| polyketide biosynthesis 3-hydroxy-3-methylglutaryl-ACP synthase pksG [Bacillus subtilis MB73/2]

 Score =  372 bits (956), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus subtilis subsp. subtilis str. 168

Species: Bacillus subtilis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|449094401|ref|YP_007426892.1| acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase [Bacillus subtilis XF-1] gi|449028316|gb|AGE63555.1| acetyl-S-AcpK beta-ketothioester polyketide intermediate transferase [Bacillus subtilis XF-1]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus subtilis XF-1

Species: Bacillus subtilis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|384175457|ref|YP_005556842.1| TaC protein [Bacillus subtilis subsp. subtilis str. RO-NN-1] gi|349594681|gb|AEP90868.1| TaC protein [Bacillus subtilis subsp. subtilis str. RO-NN-1]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus subtilis subsp. subtilis str. RO-NN-1

Species: Bacillus subtilis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|443632609|ref|ZP_21116788.1| TaC protein [Bacillus subtilis subsp. inaquosorum KCTC 13429] gi|443347432|gb|ELS61490.1| TaC protein [Bacillus subtilis subsp. inaquosorum KCTC 13429]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEIKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus subtilis subsp. inaquosorum KCTC 13429

Species: Bacillus subtilis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|430758863|ref|YP_007209584.1| Polyketide biosynthesis protein PksG [Bacillus subtilis subsp. subtilis str. BSP1] gi|430023383|gb|AGA23989.1| Polyketide biosynthesis protein PksG [Bacillus subtilis subsp. subtilis str. BSP1]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 165/235 (70%), Positives = 205/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRHLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH YLGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEYLGLNRNCRLFEVKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus subtilis subsp. subtilis str. BSP1

Species: Bacillus subtilis

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

>gi|386758442|ref|YP_006231658.1| hypothetical protein MY9_1865 [Bacillus sp. JS] gi|384931724|gb|AFI28402.1| hypothetical protein MY9_1865 [Bacillus sp. JS]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 164/235 (69%), Positives = 206/235 (87%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
           M+  GIEA+N++GG+ ++DV+ELAKYR+LDT RFENLLM++K+V+LPYEDPV+F +NAA 
Sbjct: 1   MVSAGIEAMNVFGGTAYLDVMELAKYRRLDTARFENLLMKEKAVALPYEDPVTFGVNAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
           P+ID LS  +K+ IEL+ITCSESGIDFGKS+STYIH +LGLNRNCRLFE+KQACYS TAG
Sbjct: 61  PIIDALSEAEKDRIELLITCSESGIDFGKSLSTYIHEHLGLNRNCRLFEIKQACYSGTAG 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            QMA+NFILS+ SPGAKALVIA+DISRF + E  + L+ +W++ EPS GAGAVA+L+ + 
Sbjct: 121 FQMAVNFILSQTSPGAKALVIASDISRFLIAEGGDALSEDWSYAEPSAGAGAVAVLVGEN 180

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRV 235
           PE+FQ D G+NGYY +EVMDTCRPIPDSEAG++DLSL+SYLDCC Q+F EY+KRV
Sbjct: 181 PEVFQIDPGANGYYGYEVMDTCRPIPDSEAGDSDLSLMSYLDCCEQTFLEYQKRV 235

Source: Bacillus sp. JS

Species: Bacillus sp. JS

Genus: Bacillus

Family: Bacillaceae

Order: Bacillales

Class: Bacilli

Phylum: Firmicutes

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	245
UNIPROTKB|Q71ZQ5	388	mvaS "Hydroxymethylglutaryl-Co	0.767	0.484	0.346	8.4e-26
DICTYBASE|DDB_G0288461	482	hgsA "hydroxymethylglutaryl-Co	0.902	0.458	0.286	6.3e-15
UNIPROTKB|P23228	522	HMGCS1 "Hydroxymethylglutaryl-	0.889	0.417	0.302	1.5e-13
UNIPROTKB|G4NCU0	456	MGG_01026 "Hydroxymethylglutar	0.885	0.475	0.285	1.9e-13
UNIPROTKB|F1N9T0	522	HMGCS1 "Hydroxymethylglutaryl-	0.893	0.419	0.291	2.4e-13
UNIPROTKB|F1NTT0	525	HMGCS1 "Hydroxymethylglutaryl-	0.893	0.417	0.291	2.5e-13
UNIPROTKB|E2QX73	520	HMGCS1 "Uncharacterized protei	0.897	0.423	0.289	5.1e-13
UNIPROTKB|F6RJG0	565	HMGCS1 "Uncharacterized protei	0.897	0.389	0.285	1.5e-12
UNIPROTKB|Q01581	520	HMGCS1 "Hydroxymethylglutaryl-	0.893	0.421	0.286	1.2e-11
SGD|S000004595	491	ERG13 "3-hydroxy-3-methylgluta	0.906	0.452	0.288	1.9e-11

UNIPROTKB|Q71ZQ5 mvaS "Hydroxymethylglutaryl-CoA synthase" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 71/205 (34%), Positives = 113/205 (55%)

Query:     2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPY-EDPVSFAINAAA 60
             +K+GI+ I  Y  + ++D++ELA+ R +D  +F   + Q K    P  +D V+   NAA 
Sbjct:     1 MKIGIDKIGFYTPAFYVDMVELAEARNIDPNKFTIGIGQDKMAFAPITQDSVTMGANAAL 60

Query:    61 PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
              ++D     D   I+L+I  +ESGID  K+ + YIH  LG+    R  E+K+ACY  TAG
Sbjct:    61 QILDEE---DLKKIDLVILATESGIDESKAGAVYIHRLLGIQPFSRAIEIKEACYGATAG 117

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             + +A +++     P +K LVI +DI+R+ +     E T          GAGAVAM+I+  
Sbjct:   118 INLAKDYVAKH--PDSKVLVIGSDIARYGLATG-GEATQ---------GAGAVAMVIAAD 165

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPI 205
             P     +   N +Y+ ++MD  RP+
Sbjct:   166 PRCITLE-DDNVFYTEDIMDFWRPV 189

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=ISS

GO:0006554 "lysine catabolic process" evidence=ISS

GO:0019287 "isopentenyl diphosphate biosynthetic process, mevalonate pathway" evidence=ISS

DICTYBASE|DDB_G0288461 hgsA "hydroxymethylglutaryl-CoA synthase" [Dictyostelium discoideum (taxid:44689)]

 Score = 197 (74.4 bits), Expect = 6.3e-15, P = 6.3e-15
 Identities = 69/241 (28%), Positives = 110/241 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSL--PYEDPVSFAINAAAP 61
             +GI  I +Y  S ++   +L K+  +   ++  L + Q +++     ED  S ++NA   
Sbjct:     7 IGIHGIEVYFPSTYVAQEDLEKFDGVSQGKY-TLGLGQTNMAFCGDREDIYSLSLNAVNN 65

Query:    62 LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTA 119
             L+D   N+D NSI  +   +E+ ID  KS+ T +      + N  +   +   ACY  T+
Sbjct:    66 LMDKF-NVDPNSIGRLEVGTETVIDKSKSVKTVLMDLFAKHGNTSIDGIDTINACYGGTS 124

Query:   120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
              L  A+ ++ S    G  A+V+A DI+ +    +K           P+GGAG VAMLI  
Sbjct:   125 ALHNALQWMESSYWDGRNAIVVAGDIAVY----EKGPA-------RPTGGAGVVAMLIGP 173

Query:   180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQY 237
                I  F+ G  G +   V D  +P  DSE    D  LS+  Y       +  Y K  + 
Sbjct:   174 NAPI-TFESGLRGVHMENVYDFYKPDMDSEYPRVDGKLSISCYFRAIDNCYNRYAKAFEK 232

Query:   238 K 238
             K
Sbjct:   233 K 233

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|P23228 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)]

 Score = 185 (70.2 bits), Expect = 1.5e-13, P = 1.5e-13
 Identities = 72/238 (30%), Positives = 111/238 (46%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    17 VGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKL 76

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  +++  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:    77 MER-NSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 135

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI-SD 179
             L  AIN+I S    G  ALV+A DI+  + T +            P+GGAGAVAML+ S+
Sbjct:   136 LFNAINWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGAGAVAMLVGSN 184

Query:   180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
              P IF+   G  G +     D  +P   SE    D  LS+  YL    + +  Y+ ++
Sbjct:   185 APLIFER--GLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNKI 240

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0006695 "cholesterol biosynthetic process" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB|G4NCU0 MGG_01026 "Hydroxymethylglutaryl-CoA synthase" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 183 (69.5 bits), Expect = 1.9e-13, P = 1.9e-13
 Identities = 67/235 (28%), Positives = 107/235 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLP-YEDPVSFAINAAAPL 62
             +GI+AI +Y  S +++  EL K+  + + ++   L Q K       ED  S A+ A + L
Sbjct:     8 IGIKAIEIYFPSQYVEQSELEKFDGVSSGKYTIGLGQTKMAFCDDREDIYSLALTATSNL 67

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
             +   + ID NS+  +   +E+ +D  KS+ + +    G N N    +   ACY  T  L 
Sbjct:    68 LKKYA-IDTNSVGRLEVGTETLLDKSKSVKSVLMQLFGDNTNIEGVDTVNACYGGTNALI 126

Query:   123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLIS-DKP 181
              ++N+I      G  A+V+A DI+ +     K           P+GGAG VAML+  D P
Sbjct:   127 NSVNWIEGSGWDGRDAIVVAGDIALYA----KGNA-------RPTGGAGCVAMLVGPDAP 175

Query:   182 EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKR 234
              + +   G  G +     D  +P   SE    D   SL  Y      +++ Y KR
Sbjct:   176 IVVE--PGLRGSFMQHAYDFYKPDLASEYPYVDGHFSLTCYTKALDGAYRAYNKR 228

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|F1N9T0 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 69/237 (29%), Positives = 108/237 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    17 VGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKL 76

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  +++  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:    77 MER-NSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 135

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             L  AIN+I S    G  ALV+A DI+  + T +            P+GGAGAVAML+   
Sbjct:   136 LFNAINWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGAGAVAMLVGPN 184

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
               +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y+ ++
Sbjct:   185 APLI-FERGLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNKI 240

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1NTT0 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Gallus gallus (taxid:9031)]

 Score = 183 (69.5 bits), Expect = 2.5e-13, P = 2.5e-13
 Identities = 69/237 (29%), Positives = 108/237 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    20 VGIVALEIYFPSQYVDQTELEKYDGVDAGKYTIGLGQSKMGFCSDREDINSLCLTVVQKL 79

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  +++  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:    80 MER-NSLSYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 138

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             L  AIN+I S    G  ALV+A DI+  + T +            P+GGAGAVAML+   
Sbjct:   139 LFNAINWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGAGAVAMLVGPN 187

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
               +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y+ ++
Sbjct:   188 APLI-FERGLRGTHMQHAYDFYKPDMVSEYPVVDGKLSIQCYLSALDRCYSVYRNKI 243

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|E2QX73 HMGCS1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 5.1e-13, P = 5.1e-13
 Identities = 69/238 (28%), Positives = 108/238 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    17 VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCLTVVQNL 76

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  S +  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:    77 MERHS-LSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             +  A+N+I S    G  ALV+A DI+  + T +            P+GG GAVA+LI   
Sbjct:   136 VFNAVNWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGVGAVALLIGPN 184

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
               +  FD G  G +     D  +P   SE    D  LS+  YL    + +  Y+K+++
Sbjct:   185 APLI-FDRGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIR 241

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

UNIPROTKB|F6RJG0 HMGCS1 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 179 (68.1 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 68/238 (28%), Positives = 109/238 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    62 VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNL 121

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  +++  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:   122 MER-NSLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAA 180

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             +  A+N+I S    G  ALV+A DI+  + T +            P+GG GAVAMLI   
Sbjct:   181 VFNAVNWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGVGAVAMLIGPN 229

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
               +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y+K+++
Sbjct:   230 APLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYRKKIR 286

GO:0005886 "plasma membrane" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

UNIPROTKB|Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 175 (66.7 bits), Expect = 1.2e-11, P = 1.2e-11
 Identities = 68/237 (28%), Positives = 107/237 (45%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
             VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +     L
Sbjct:    17 VGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNL 76

Query:    63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
             ++  +N+  + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct:    77 MER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGGTAA 135

Query:   121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
             +  A+N+I S    G  ALV+A DI+  + T +            P+GG GAVA+LI   
Sbjct:   136 VFNAVNWIESSSWDGRYALVVAGDIA-VYATGNAR----------PTGGVGAVALLIGPN 184

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
               +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y K++
Sbjct:   185 APLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 240

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA

GO:0016853 "isomerase activity" evidence=IEA

GO:0033197 "response to vitamin E" evidence=IEA

GO:0042493 "response to drug" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0043177 "organic acid binding" evidence=IEA

GO:0046690 "response to tellurium ion" evidence=IEA

GO:0055094 "response to lipoprotein particle stimulus" evidence=IEA

GO:0071372 "cellular response to follicle-stimulating hormone stimulus" evidence=IEA

GO:0071397 "cellular response to cholesterol" evidence=IEA

GO:0001101 "response to acid" evidence=IEA

GO:0001889 "liver development" evidence=IEA

GO:0007420 "brain development" evidence=IEA

GO:0008144 "drug binding" evidence=IEA

GO:0008584 "male gonad development" evidence=IEA

GO:0009645 "response to low light intensity stimulus" evidence=IEA

GO:0014074 "response to purine-containing compound" evidence=IEA

GO:0006629 "lipid metabolic process" evidence=NAS

GO:0005829 "cytosol" evidence=TAS

GO:0006695 "cholesterol biosynthetic process" evidence=TAS

GO:0044255 "cellular lipid metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

SGD|S000004595 ERG13 "3-hydroxy-3-methylglutaryl-CoA (HMG-CoA) synthase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 174 (66.3 bits), Expect = 1.9e-11, P = 1.9e-11
 Identities = 70/243 (28%), Positives = 109/243 (44%)

Query:     4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSL--PYEDPVSFAINAAAP 61
             VGI+ I +Y  +  ++  EL K+  +   ++  + + Q ++S     ED  S ++   + 
Sbjct:    49 VGIKGIQIYIPTQCVNQSELEKFDGVSQGKY-TIGLGQTNMSFVNDREDIYSMSLTVLSK 107

Query:    62 LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
             LI +  NID N I  +   +E+ ID  KS+ + +    G N +    +   ACY  T  L
Sbjct:   108 LIKSY-NIDTNKIGRLEVGTETLIDKSKSVKSVLMQLFGENTDVEGIDTLNACYGGTNAL 166

Query:   122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLIS-DK 180
               ++N+I S    G  A+V+  DI+ +    DK           P+GGAG VAM I  D 
Sbjct:   167 FNSLNWIESNAWDGRDAIVVCGDIAIY----DKGAA-------RPTGGAGTVAMWIGPDA 215

Query:   181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQYK 238
             P +F     S   Y     D  +P   SE    D   SL  Y+    Q +K Y K+   K
Sbjct:   216 PIVFDSVRAS---YMEHAYDFYKPDFTSEYPYVDGHFSLTCYVKALDQVYKSYSKKAISK 272

Query:   239 IIV 241
              +V
Sbjct:   273 GLV 275

GO:0006629 "lipid metabolic process" evidence=IEA

GO:0008202 "steroid metabolic process" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0006694 "steroid biosynthetic process" evidence=IEA

GO:0016126 "sterol biosynthetic process" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0004421 "hydroxymethylglutaryl-CoA synthase activity" evidence=IEA;IMP

GO:0008152 "metabolic process" evidence=IEA

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0006696 "ergosterol biosynthetic process" evidence=IMP

GO:0003824 "catalytic activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P40830	PKSG_BACSU	2, ., 3, ., 3, ., -	0.7021	0.9591	0.5595	yes	N/A

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.3.3	LOW CONFIDENCE prediction!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	245
COG3425	377	COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synt	3e-60
cd00827	324	cd00827, init_cond_enzymes, "initiating" condensin	7e-53
TIGR01835	379	TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylgluta	1e-45
TIGR01833	457	TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutar	1e-16
COG0332	323	COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]	2e-13
pfam01154	171	pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-c	2e-13
PLN02577	459	PLN02577, PLN02577, hydroxymethylglutaryl-CoA synt	1e-11
cd00830	320	cd00830, KAS_III, Ketoacyl-acyl carrier protein sy	5e-11
PRK04262	347	PRK04262, PRK04262, hypothetical protein; Provisio	2e-09
PRK12880	353	PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protei	3e-09
PRK09258	338	PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protei	8e-07
TIGR00748	345	TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-	1e-06
PRK09352	319	PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protei	2e-06
PRK12879	325	PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protei	4e-05
pfam08545	80	pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-pr	1e-04
PRK06840	339	PRK06840, PRK06840, hypothetical protein; Validate	2e-04
cd00831	361	cd00831, CHS_like, Chalcone and stilbene synthases	0.001

>gnl|CDD|225959 COG3425, PksG, 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

 Score =  194 bits (494), Expect = 3e-60
 Identities = 69/238 (28%), Positives = 106/238 (44%), Gaps = 16/238 (6%)

Query: 3   KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAP 61
            +GI  I  Y     I + ELA+   +D  + +  L   +KSV    ED V+ A+ AA  
Sbjct: 2   MIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARN 61

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
            +   ++ID + I  +I  SESG D  K  +T +   LGLN + R  +++ ACY+ TA L
Sbjct: 62  ALKR-ADIDPSKIGAVIVGSESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAAL 120

Query: 122 QMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
           Q AI ++ S     +  LVI  D +++          +     E + GAGAVA LI   P
Sbjct: 121 QAAIGWVES--GMISYGLVIGADTAQY-----APGDAL-----EYTAGAGAVAFLIGKNP 168

Query: 182 EIFQFDIGSNGYYSFEVMDTCRPIPDSE-AGNADLSLLSYLDCCAQSFKEYKKRVQYK 238
            I   +    G Y+ +  D  RP        +   S  +Y      + K Y ++    
Sbjct: 169 PI-VAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLS 225

Length = 377

>gnl|CDD|238423 cd00827, init_cond_enzymes, "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

 Score =  173 bits (440), Expect = 7e-53
 Identities = 81/223 (36%), Positives = 112/223 (50%), Gaps = 21/223 (9%)

Query: 3   KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPL 62
            VGIEAI  Y     +D  ELA+   +D  ++    + Q+ ++   ED  + A+ AA   
Sbjct: 1   DVGIEAIGAYLPRYRVDNEELAEGLGVDPGKY-TTGIGQRHMAGDDEDVPTMAVEAARRA 59

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
           ++  + ID + I L+I  +ES ID GKS +TY+   LGL  N   F+LKQACY  TA LQ
Sbjct: 60  LER-AGIDPDDIGLLIVATESPIDKGKSAATYLAELLGLT-NAEAFDLKQACYGGTAALQ 117

Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
           +A N + S   P   ALV+A+DI+ +        L  E +  EP+ G GA AML+S  P 
Sbjct: 118 LAANLVES--GPWRYALVVASDIASY--------LLDEGSALEPTLGDGAAAMLVSRNPG 167

Query: 183 IFQFDI-----GSNGYYSF---EVMDTCRPIPDSEAGNADLSL 217
           I    I      S+  Y F    VMD   P P   A    L+ 
Sbjct: 168 ILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTA 210

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues. Length = 324

>gnl|CDD|213655 TIGR01835, HMG-CoA-S_prok, 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

 Score =  156 bits (395), Expect = 1e-45
 Identities = 85/235 (36%), Positives = 130/235 (55%), Gaps = 18/235 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           +GI+ I+ +    ++D+  LA+ R +D  +F   + Q+K +V    ED V+ A +AA P+
Sbjct: 1   IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPI 60

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
           +D     DK  I+++I  +ESGID  K+ + Y+H  LGL   CR FELKQACY  TA LQ
Sbjct: 61  LDR---NDKQKIDMVIFGTESGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQ 117

Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
           MA   +   +SP  K LVIA+DI+++       E        EP+ GAGAVAML+S  P+
Sbjct: 118 MAKGHV--ALSPDRKVLVIASDIAKY-----GLESPG-----EPTQGAGAVAMLVSADPK 165

Query: 183 IFQFDIGSNGYYSFEVMDTCRPIPDSEAG-NADLSLLSYLDCCAQSFKEYKKRVQ 236
           +   +   +  Y+ ++MD  RP   + A  +   S   YL+    ++ +Y KR  
Sbjct: 166 LLAINE-DSVLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTG 219

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event. Length = 379

>gnl|CDD|233591 TIGR01833, HMG-CoA-S_euk, 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

 Score = 77.9 bits (192), Expect = 1e-16
 Identities = 75/241 (31%), Positives = 111/241 (46%), Gaps = 20/241 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +   ++   L Q K       ED  S  +   + L
Sbjct: 5   VGILALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVSKL 64

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLG--LNRNCRLFELKQACYSCTAG 120
           ++   NID + I  +   +E+ ID  KS+ T +        N +    +   ACY  TA 
Sbjct: 65  MER-YNIDYDQIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDVEGIDTTNACYGGTAA 123

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI-SD 179
           L  AIN+I S    G  ALV+A DI+ +     K           P+GGAGAVAMLI  +
Sbjct: 124 LFNAINWIESSSWDGRYALVVAGDIAVY----AKGNA-------RPTGGAGAVAMLIGPN 172

Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQY 237
            P +  F+ G  G +     D  +P   SE    D  LS+  YL    + +K Y K+++ 
Sbjct: 173 APIV--FERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKIEK 230

Query: 238 K 238
           +
Sbjct: 231 Q 231

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes. Length = 457

>gnl|CDD|223409 COG0332, FabH, 3-oxoacyl-[acyl-carrier-protein]

 Score = 68.0 bits (167), Expect = 2e-13
 Identities = 35/147 (23%), Positives = 58/147 (39%), Gaps = 14/147 (9%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E     A+ AA   +++ + I  + I+LII  + +      S +  +   LGL      F
Sbjct: 50  ETTSDLAVEAARKALED-AGISPDDIDLIIVATSTPDHLFPSTACLVQARLGLGG-APAF 107

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSG 168
           +L+ AC      L +A   I S        LV+  +     +  D  +      F     
Sbjct: 108 DLQAACSGFLYALSVADGLIRS--GGYKNVLVVGAETLSRIL--DWTDRDTCVLF----- 158

Query: 169 GAGAVAMLIS---DKPEIFQFDIGSNG 192
           G GA A+++    D   I   D+GS+G
Sbjct: 159 GDGAGAVVLEATEDDNGILDTDLGSDG 185

Length = 323

>gnl|CDD|110176 pfam01154, HMG_CoA_synt_N, Hydroxymethylglutaryl-coenzyme A synthase N terminal

 Score = 65.7 bits (160), Expect = 2e-13
 Identities = 56/177 (31%), Positives = 84/177 (47%), Gaps = 15/177 (8%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAAPL 62
           VGI A+ +Y  S ++D  EL KY  +   ++   L Q K       ED  S  +     L
Sbjct: 2   VGIVALEIYFPSQYVDQAELEKYDGVSAGKYTIGLGQTKMGFCTDREDINSLCLTVVQKL 61

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCTAG 120
           ++  +N+D + I  +   +E+ ID  KS+ T +      + N  +   +   ACY  TA 
Sbjct: 62  MER-NNLDYDCIGRLEVGTETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAA 120

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
           L  A+N+I S    G  ALV+A DI+  +   +            P+GGAGAVAMLI
Sbjct: 121 LFNALNWIESSSWDGRYALVVAGDIA-IYAKGNA----------RPTGGAGAVAMLI 166

Length = 171

>gnl|CDD|178189 PLN02577, PLN02577, hydroxymethylglutaryl-CoA synthase

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 56/206 (27%), Positives = 83/206 (40%), Gaps = 45/206 (21%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           ED +S ++     L++   NID   I  +   SE+ ID  KS+ T++           LF
Sbjct: 51  EDVISMSLTVVKSLLEKY-NIDPKQIGRLEVGSETVIDKSKSIKTFLMQ---------LF 100

Query: 109 E-----------LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNEL 157
           E              ACY  TA L   +N++ S    G   LV+A D +           
Sbjct: 101 EESGNTDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSA----------- 149

Query: 158 TMEWAFFE----PSGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGN 212
                + E    P+GGAGAVAML+  + P    F+    G +   V D  +P   SE   
Sbjct: 150 ----VYAEGPARPTGGAGAVAMLVGPNAP--IVFESKYRGSHMAHVYDFYKPDLASEYPV 203

Query: 213 AD--LSLLSYLDCCAQSFKEYKKRVQ 236
            D  LS   YL      +K + ++ +
Sbjct: 204 VDGKLSQTCYLMALDSCYKRFCEKYE 229

Length = 459

>gnl|CDD|238426 cd00830, KAS_III, Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems

 Score = 61.0 bits (149), Expect = 5e-11
 Identities = 39/156 (25%), Positives = 66/156 (42%), Gaps = 22/156 (14%)

Query: 44  VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR 103
           ++ P E     A+ AA   +++ + ID + I+LII  + +      + +  +   LG  +
Sbjct: 43  IADPGETTSDLAVEAAKKALED-AGIDADDIDLIIVATSTPDYLFPATACLVQARLGA-K 100

Query: 104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTME 160
           N   F++  AC     GL  A   I S    G     LV+  +  SR    +  +  T  
Sbjct: 101 NAAAFDINAACSGFLYGLSTAAGLIRS----GGAKNVLVVGAETLSRI--LDWTDRST-- 152

Query: 161 WAF-FEPSGGAGAVAMLIS---DKPEIFQFDIGSNG 192
            A  F    G GA A+++    + P I    +GS+G
Sbjct: 153 -AVLF----GDGAGAVVLEATEEDPGILDSVLGSDG 183

It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA. Length = 320

>gnl|CDD|235266 PRK04262, PRK04262, hypothetical protein; Provisional

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 46/173 (26%), Positives = 71/173 (41%), Gaps = 22/173 (12%)

Query: 35  ENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTY 94
             L +++KSV  P ED  + A+ AA   +   + ID   I  +   SES     K  +T 
Sbjct: 35  RGLGVEEKSVPGPDEDTATIAVEAARNALKR-AGIDPKEIGAVYVGSESHPYAVKPTATI 93

Query: 95  IHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDK 154
           +   LG   +    +L+ AC + TA LQ A+  + S +     AL I  D ++       
Sbjct: 94  VAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGM--IKYALAIGADTAQ---GAPG 148

Query: 155 NELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPD 207
           + L       E +  AG  A +I  +  I +        YS+   DT    PD
Sbjct: 149 DAL-------EYTAAAGGAAFIIGKEEVIAEI----EATYSY-TTDT----PD 185

Length = 347

>gnl|CDD|171793 PRK12880, PRK12880, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

 Score = 56.1 bits (135), Expect = 3e-09
 Identities = 49/146 (33%), Positives = 72/146 (49%), Gaps = 16/146 (10%)

Query: 52  VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
                +AA  L+  L NIDKNS++ +I  ++S   F  S + Y+H  L L+     F+L 
Sbjct: 61  SDLGKHAANTLLQGL-NIDKNSLDALIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLG 119

Query: 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGA 170
           QAC     GL +A + I S +    K L+I  D +S+F   ++ N          P  G 
Sbjct: 120 QACAGYLYGLFVAHSLIQSGL---GKILLICGDTLSKFIHPKNMN--------LAPIFGD 168

Query: 171 GAVAMLI--SDKPEIFQFDIGSNGYY 194
           G  A LI  +D  E F F++GS+G Y
Sbjct: 169 GVSATLIEKTDFNEAF-FELGSDGKY 193

Length = 353

>gnl|CDD|181732 PRK09258, PRK09258, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

 Score = 48.7 bits (117), Expect = 8e-07
 Identities = 35/136 (25%), Positives = 54/136 (39%), Gaps = 17/136 (12%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
           AI A    +   + ID + I L+I  S        + +  +HH LGL ++C  F++  AC
Sbjct: 65  AIAAGRKALAE-AGIDPSDIGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNAC 123

Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVI----ATDISRFFVTEDKNELTMEWAFFEPS- 167
                G+  A N I      G    ALV+    A +I    +       T     F  S 
Sbjct: 124 LGFLNGMLDAANMIEL----GQIDYALVVSGESAREIVEATIDRLLAPETTR-EDFAQSF 178

Query: 168 ----GGAGAVAMLISD 179
                G+GA A +++ 
Sbjct: 179 ATLTLGSGAAAAVLTR 194

Length = 338

>gnl|CDD|129831 TIGR00748, HMG_CoA_syn_Arc, hydroxymethylglutaryl-CoA synthase, putative

 Score = 48.0 bits (114), Expect = 1e-06
 Identities = 51/199 (25%), Positives = 79/199 (39%), Gaps = 19/199 (9%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFEN-LLMQQKSVSLPYEDPVSFAINAAAPL 62
            GI     Y     I V E+A+    D     N L +++K+V    ED  +  + AA   
Sbjct: 2   AGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNA 61

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
           +   + ID   I  +   SES     K  +T +   +G   +    +L+ AC + TAG+Q
Sbjct: 62  LKR-AKIDPKDIGAVYVGSESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQ 120

Query: 123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
             +  + S +      L I  D ++     D  E T          GAG  A +I +K  
Sbjct: 121 ACMGLVASGMI--KYGLAIGADTAQ-GAPGDALEYT---------AGAGGAAYIIGEKNT 168

Query: 183 IFQFDIGSNGYYSFEVMDT 201
           +  F     G YS+   DT
Sbjct: 169 VAYF----EGTYSY-TTDT 182

This family of archaeal proteins shows considerable homology and identical active site residues to the bacterial hydroxymethylglutaryl-CoA synthase (HMG-CoA synthase, modeled by TIGR01835) which is the second step in the mevalonate pathway of IPP biosynthesis. An enzyme from Pseudomonas fluorescens involved in the biosynthesis of the polyketide diacetyl-phloroglucinol is more closely related, but lacks the active site residues. In each of the genomes containing a member of this family there is no other recognized HMG-CoA synthase, although other elements of the mevalonate pathway are in evidence. The only archaeon currently sequenced which lacks a homolog in this pathway is Halobacterium, which _does_ contain a separate HMG-CoA synthase. Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound [Fatty acid and phospholipid metabolism, Biosynthesis]. Length = 345

>gnl|CDD|236475 PRK09352, PRK09352, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

 Score = 47.4 bits (114), Expect = 2e-06
 Identities = 45/157 (28%), Positives = 62/157 (39%), Gaps = 29/157 (18%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E     A  AA   ++  + ID   I+LII  + +      S +  +   LG   N   F
Sbjct: 50  ETTSDLATEAAKKALEA-AGIDPEDIDLIIVATTTPDYAFPSTACLVQARLGAK-NAAAF 107

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
           +L  AC      L  A  FI S    GA    LVI  +  SR           ++W    
Sbjct: 108 DLSAACSGFVYALSTADQFIRS----GAYKNVLVIGAEKLSRI----------VDWTDRS 153

Query: 163 ---FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
               F   G GAGAV +  S++P I    +GS+G Y 
Sbjct: 154 TCVLF---GDGAGAVVLGASEEPGILSTHLGSDGSYG 187

Length = 319

>gnl|CDD|237245 PRK12879, PRK12879, 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

 Score = 43.3 bits (103), Expect = 4e-05
 Identities = 35/142 (24%), Positives = 62/142 (43%), Gaps = 16/142 (11%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
           AI AA   +   + +D   I+LII  + +      S ++ +   LG+  N   F++  AC
Sbjct: 57  AIKAAERALAR-AGLDAEDIDLIIVATTTPDYLFPSTASQVQARLGI-PNAAAFDINAAC 114

Query: 115 YSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGAGAV 173
                GL+ A   I S +    K LVI  + +S+     D+         F    G GA 
Sbjct: 115 AGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTDRTTCI----LF----GDGAG 164

Query: 174 AMLIS---DKPEIFQFDIGSNG 192
           A+++    ++P    + +G++G
Sbjct: 165 AVVLEATENEPGFIDYVLGTDG 186

Length = 325

>gnl|CDD|203976 pfam08545, ACP_syn_III, 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III

 Score = 39.4 bits (93), Expect = 1e-04
 Identities = 23/92 (25%), Positives = 34/92 (36%), Gaps = 19/92 (20%)

Query: 108 FELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAFF 164
           F++  AC      L  A   I S    G     LV+  +  SR     D++  T    F 
Sbjct: 1   FDINAACSGFVYALSTAAALIRS----GRAKNVLVVGAETLSRILDWTDRS--TA-VLF- 52

Query: 165 EPSGGAGAVAMLIS----DKPEIFQFDIGSNG 192
               G GA A+++         I    +GS+G
Sbjct: 53  ----GDGAGAVVLEATEEGGARILSSVLGSDG 80

This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EC:2.3.1.180, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. Length = 80

>gnl|CDD|235872 PRK06840, PRK06840, hypothetical protein; Validated

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 31/131 (23%), Positives = 57/131 (43%), Gaps = 6/131 (4%)

Query: 3   KVGIEAINLYGGSVFIDVIELAKYRKL--DTVRFENLLMQQKSVSLPYEDPVSFAINAAA 60
            VGI    +Y     +   E+A+   +  + V  E   + +K V  P +     AI AA 
Sbjct: 4   NVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVI-EKFGIYEKPVPGPEDHTSDMAIAAAK 62

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTA 119
           P +   + +D  +I+++I       D+   S +  I H +G  +N   F++   C S   
Sbjct: 63  PALKQ-AGVDPAAIDVVIYIGSEHKDYPVWSSAPKIQHEIGA-KNAWAFDIMAVCASFPI 120

Query: 120 GLQMAINFILS 130
            L++A + + S
Sbjct: 121 ALKVAKDLLYS 131

Length = 339

>gnl|CDD|238427 cd00831, CHS_like, Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs

 Score = 39.5 bits (93), Expect = 0.001
 Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 20/161 (12%)

Query: 54  FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ- 112
            A  AA   +D    +  + I+ ++  + +G     S+   + + LGL  + + + L   
Sbjct: 88  LAEEAARGALDEAG-LRPSDIDHLVVNTSTGNPT-PSLDAMLINRLGLRPDVKRYNLGGM 145

Query: 113 ACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFVTEDK--NELTMEWAFFEPSGG 169
            C +    L +A +  L + +PGA+ LV++T+  S ++   D     +    A F    G
Sbjct: 146 GCSAGAIALDLAKD--LLEANPGARVLVVSTELCSLWYRGPDHRSMLVGN--ALF----G 197

Query: 170 AGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
            GA A+L+S+ P              FE++      +PDSE
Sbjct: 198 DGAAAVLLSNDP-----RDRRRERPLFELVRAASTLLPDSE 233

PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions. Length = 361

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	245
COG0332	323	FabH 3-oxoacyl-[acyl-carrier-protein]	100.0
PLN02577	459	hydroxymethylglutaryl-CoA synthase	100.0
TIGR01833	454	HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synth	100.0
TIGR01835	379	HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synt	100.0
COG3425	377	PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi	100.0
PRK05963	326	3-oxoacyl-(acyl carrier protein) synthase II; Revi	100.0
PRK12880	353	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
PRK07204	329	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
CHL00203	326	fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr	100.0
PRK12879	325	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
PLN02326	379	3-oxoacyl-[acyl-carrier-protein] synthase III	100.0
PRK09258	338	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
cd00830	320	KAS_III Ketoacyl-acyl carrier protein synthase III	100.0
PRK04262	347	hypothetical protein; Provisional	100.0
PRK09352	319	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
PRK06840	339	hypothetical protein; Validated	100.0
TIGR00747	318	fabH 3-oxoacyl-(acyl-carrier-protein) synthase III	100.0
TIGR00748	345	HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase	100.0
PRK06816	378	3-oxoacyl-(acyl carrier protein) synthase III; Rev	100.0
PLN03169	391	chalcone synthase family protein; Provisional	100.0
cd00831	361	CHS_like Chalcone and stilbene synthases; plant-sp	100.0
PLN03171	399	chalcone synthase-like protein; Provisional	100.0
PRK07515	372	3-oxoacyl-(acyl carrier protein) synthase III; Rev	99.97
cd00827	324	init_cond_enzymes "initiating" condensing enzymes	99.97
PF01154	174	HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A s	99.97
PLN03172	393	chalcone synthase family protein; Provisional	99.96
PLN03168	389	chalcone synthase; Provisional	99.96
PLN03170	401	chalcone synthase; Provisional	99.96
PF00195	226	Chal_sti_synt_N: Chalcone and stilbene synthases,	99.96
PLN03173	391	chalcone synthase; Provisional	99.96
KOG1393|consensus	462		99.95
PLN02932	478	3-ketoacyl-CoA synthase	99.94
PLN02377	502	3-ketoacyl-CoA synthase	99.92
COG3424	356	BcsA Predicted naringenin-chalcone synthase [Secon	99.91
PLN02854	521	3-ketoacyl-CoA synthase	99.9
PLN02192	511	3-ketoacyl-CoA synthase	99.9
PLN00415	466	3-ketoacyl-CoA synthase	99.9
PF08392	290	FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-	99.86
cd00327	254	cond_enzymes Condensing enzymes; Family of enzymes	99.82
TIGR02845	327	spore_V_AD stage V sporulation protein AD. Bacillu	99.78
PRK06147	348	3-oxoacyl-(acyl carrier protein) synthase; Validat	99.75
cd00825	332	decarbox_cond_enzymes decarboxylating condensing e	99.74
PRK08304	337	stage V sporulation protein AD; Validated	99.69
PF08545	80	ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)	99.64
cd00751	386	thiolase Thiolase are ubiquitous enzymes that cata	99.62
PRK07108	392	acetyl-CoA acetyltransferase; Provisional	99.59
PRK05656	393	acetyl-CoA acetyltransferase; Provisional	99.57
TIGR01930	386	AcCoA-C-Actrans acetyl-CoA acetyltransferases. Thi	99.57
PRK06205	404	acetyl-CoA acetyltransferase; Provisional	99.56
PRK08235	393	acetyl-CoA acetyltransferase; Provisional	99.56
PRK09051	394	beta-ketothiolase; Provisional	99.54
PRK08242	402	acetyl-CoA acetyltransferase; Validated	99.52
PRK12578	385	acetyl-CoA acetyltransferase; Provisional	99.5
PF00108	264	Thiolase_N: Thiolase, N-terminal domain; InterPro:	99.5
PRK09052	399	acetyl-CoA acetyltransferase; Provisional	99.48
PRK08170	426	acetyl-CoA acetyltransferase; Provisional	99.47
PRK08313	386	acetyl-CoA acetyltransferase; Provisional	99.47
cd00834	406	KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP)	99.46
PRK05790	393	putative acyltransferase; Provisional	99.46
PRK06954	397	acetyl-CoA acetyltransferase; Provisional	99.46
smart00825	424	PKS_KS Beta-ketoacyl synthase. The structure of be	99.46
PRK12404	334	stage V sporulation protein AD; Provisional	99.44
cd00826	393	nondecarbox_cond_enzymes nondecarboxylating conden	99.43
PRK06059	399	lipid-transfer protein; Provisional	99.42
PLN02287	452	3-ketoacyl-CoA thiolase	99.42
cd00829	375	SCP-x_thiolase Thiolase domain associated with ste	99.41
PRK07661	391	acetyl-CoA acetyltransferase; Provisional	99.41
PRK06064	389	acetyl-CoA acetyltransferase; Provisional	99.37
PRK06065	392	acetyl-CoA acetyltransferase; Provisional	99.37
PRK06289	403	acetyl-CoA acetyltransferase; Provisional	99.37
PRK08963	428	fadI 3-ketoacyl-CoA thiolase; Reviewed	99.35
PRK08131	401	acetyl-CoA acetyltransferase; Provisional	99.35
PRK07850	387	acetyl-CoA acetyltransferase; Provisional	99.34
PRK13359	400	beta-ketoadipyl CoA thiolase; Provisional	99.34
PRK06633	392	acetyl-CoA acetyltransferase; Provisional	99.33
PRK09050	401	beta-ketoadipyl CoA thiolase; Validated	99.33
TIGR02446	430	FadI fatty oxidation complex, beta subunit FadI. T	99.32
PRK06445	394	acetyl-CoA acetyltransferase; Provisional	99.32
PRK07516	389	acetyl-CoA acetyltransferase; Provisional	99.31
PRK07851	406	acetyl-CoA acetyltransferase; Provisional	99.3
PRK06366	388	acetyl-CoA acetyltransferase; Provisional	99.3
TIGR02430	400	pcaF beta-ketoadipyl CoA thiolase. Members of this	99.3
PRK06504	390	acetyl-CoA acetyltransferase; Provisional	99.29
PLN02644	394	acetyl-CoA C-acetyltransferase	99.29
cd00833	421	PKS polyketide synthases (PKSs) polymerize simple	99.28
PTZ00455	438	3-ketoacyl-CoA thiolase; Provisional	99.26
PRK06157	398	acetyl-CoA acetyltransferase; Validated	99.25
PRK06158	384	thiolase; Provisional	99.25
PRK06501	425	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.25
PRK07314	411	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.22
PRK08947	387	fadA 3-ketoacyl-CoA thiolase; Reviewed	99.21
PRK09268	427	acetyl-CoA acetyltransferase; Provisional	99.19
TIGR02445	385	fadA fatty oxidation complex, beta subunit FadA. T	99.17
PRK08256	391	lipid-transfer protein; Provisional	99.17
cd00828	407	elong_cond_enzymes "elongating" condensing enzymes	99.15
PRK06365	430	acetyl-CoA acetyltransferase; Provisional	99.15
PRK06025	417	acetyl-CoA acetyltransferase; Provisional	99.15
TIGR03150	407	fabF beta-ketoacyl-acyl-carrier-protein synthase I	99.11
PRK05952	381	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.09
PRK07801	382	acetyl-CoA acetyltransferase; Provisional	99.08
PRK08439	406	3-oxoacyl-(acyl carrier protein) synthase II; Revi	99.07
PF00109	254	ketoacyl-synt: Beta-ketoacyl synthase, N-terminal	99.06
PRK07103	410	polyketide beta-ketoacyl:acyl carrier protein synt	99.06
PRK09185	392	3-oxoacyl-(acyl carrier protein) synthase I; Revie	98.99
PRK06333	424	3-oxoacyl-(acyl carrier protein) synthase II; Revi	98.96
PRK06690	361	acetyl-CoA acetyltransferase; Provisional	98.95
PLN02836	437	3-oxoacyl-[acyl-carrier-protein] synthase	98.93
PRK08142	388	acetyl-CoA acetyltransferase; Provisional	98.93
PTZ00050	421	3-oxoacyl-acyl carrier protein synthase; Provision	98.91
PRK07967	406	3-oxoacyl-(acyl carrier protein) synthase I; Revie	98.89
PRK08722	414	3-oxoacyl-(acyl carrier protein) synthase II; Revi	98.89
PRK08257	498	acetyl-CoA acetyltransferase; Validated	98.83
PRK07855	386	lipid-transfer protein; Provisional	98.81
PLN02787	540	3-oxoacyl-[acyl-carrier-protein] synthase II	98.81
PRK09116	405	3-oxoacyl-(acyl carrier protein) synthase II; Revi	98.81
PRK06066	385	acetyl-CoA acetyltransferase; Provisional	98.79
PRK14691	342	3-oxoacyl-(acyl carrier protein) synthase II; Prov	98.78
cd00832	399	CLF Chain-length factor (CLF) is a factor required	98.74
COG0183	392	PaaJ Acetyl-CoA acetyltransferase [Lipid metabolis	98.74
KOG1390|consensus	396		98.71
PRK07910	418	3-oxoacyl-(acyl carrier protein) synthase II; Revi	98.69
KOG1406|consensus	408		98.58
COG3321	1061	Polyketide synthase modules and related proteins [	98.56
PRK06519	398	3-oxoacyl-(acyl carrier protein) synthase II; Revi	98.56
PRK07937	352	lipid-transfer protein; Provisional	98.51
PF07451	329	SpoVAD: Stage V sporulation protein AD (SpoVAD); I	98.41
TIGR02813	2582	omega_3_PfaA polyketide-type polyunsaturated fatty	98.41
COG0304	412	FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li	98.22
KOG1391|consensus	396		98.03
KOG1392|consensus	465		97.87
KOG1389|consensus	435		97.79
PF08540	282	HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A s	97.77
KOG1394|consensus	440		97.64
PF08541	90	ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (AC	96.26
PF13723	218	Ketoacyl-synt_2: Beta-ketoacyl synthase, N-termina	95.4
TIGR00748	345	HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase	95.26
PRK06816	378	3-oxoacyl-(acyl carrier protein) synthase III; Rev	95.11
PRK06147	348	3-oxoacyl-(acyl carrier protein) synthase; Validat	95.01
PRK07204	329	3-oxoacyl-(acyl carrier protein) synthase III; Rev	94.67
CHL00203	326	fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Pr	94.59
PRK12879	325	3-oxoacyl-(acyl carrier protein) synthase III; Rev	94.26
KOG1202|consensus	2376		94.11
PRK09258	338	3-oxoacyl-(acyl carrier protein) synthase III; Rev	94.04
PRK06840	339	hypothetical protein; Validated	93.83
TIGR00747	318	fabH 3-oxoacyl-(acyl-carrier-protein) synthase III	93.81
PRK05963	326	3-oxoacyl-(acyl carrier protein) synthase II; Revi	93.75
PLN02326	379	3-oxoacyl-[acyl-carrier-protein] synthase III	93.29
COG0332	323	FabH 3-oxoacyl-[acyl-carrier-protein]	93.27
cd00830	320	KAS_III Ketoacyl-acyl carrier protein synthase III	93.16
PRK04262	347	hypothetical protein; Provisional	92.81
cd00825	332	decarbox_cond_enzymes decarboxylating condensing e	92.61
PRK09352	319	3-oxoacyl-(acyl carrier protein) synthase III; Rev	92.26
PRK07515	372	3-oxoacyl-(acyl carrier protein) synthase III; Rev	91.61
PRK08257	498	acetyl-CoA acetyltransferase; Validated	91.56
PRK07937	352	lipid-transfer protein; Provisional	90.62
cd00327	254	cond_enzymes Condensing enzymes; Family of enzymes	89.87
PRK09052	399	acetyl-CoA acetyltransferase; Provisional	89.47
PRK06025	417	acetyl-CoA acetyltransferase; Provisional	89.47
PRK09051	394	beta-ketothiolase; Provisional	89.23
PRK06205	404	acetyl-CoA acetyltransferase; Provisional	89.09
PF02803	123	Thiolase_C: Thiolase, C-terminal domain; InterPro:	88.8
COG0304	412	FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Li	88.77
PF02801	119	Ketoacyl-synt_C: Beta-ketoacyl synthase, C-termina	88.7
PRK06366	388	acetyl-CoA acetyltransferase; Provisional	88.59
PRK06064	389	acetyl-CoA acetyltransferase; Provisional	88.09
PRK07850	387	acetyl-CoA acetyltransferase; Provisional	87.62
PRK07851	406	acetyl-CoA acetyltransferase; Provisional	86.83
PRK07516	389	acetyl-CoA acetyltransferase; Provisional	85.15
cd00831	361	CHS_like Chalcone and stilbene synthases; plant-sp	84.64
PTZ00455	438	3-ketoacyl-CoA thiolase; Provisional	84.49
PRK12880	353	3-oxoacyl-(acyl carrier protein) synthase III; Rev	84.4
PRK05790	393	putative acyltransferase; Provisional	84.36
PRK06158	384	thiolase; Provisional	84.25
PRK06690	361	acetyl-CoA acetyltransferase; Provisional	84.0
PRK14691	342	3-oxoacyl-(acyl carrier protein) synthase II; Prov	83.87
cd00829	375	SCP-x_thiolase Thiolase domain associated with ste	83.75
PRK06519	398	3-oxoacyl-(acyl carrier protein) synthase II; Revi	83.35
COG3425	377	PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipi	83.29
PRK09050	401	beta-ketoadipyl CoA thiolase; Validated	82.95
TIGR03150	407	fabF beta-ketoacyl-acyl-carrier-protein synthase I	82.92
PRK13359	400	beta-ketoadipyl CoA thiolase; Provisional	82.17
PRK07661	391	acetyl-CoA acetyltransferase; Provisional	82.03
PRK08947	387	fadA 3-ketoacyl-CoA thiolase; Reviewed	81.78
cd00834	406	KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP)	81.64
PRK07314	411	3-oxoacyl-(acyl carrier protein) synthase II; Revi	81.59
PRK06504	390	acetyl-CoA acetyltransferase; Provisional	81.34
TIGR02430	400	pcaF beta-ketoadipyl CoA thiolase. Members of this	80.34
PLN02787	540	3-oxoacyl-[acyl-carrier-protein] synthase II	80.24
PRK06289	403	acetyl-CoA acetyltransferase; Provisional	80.14

>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]

Probab=100.00  E-value=4.1e-46  Score=325.38  Aligned_cols=232  Identities=17%  Similarity=0.172  Sum_probs=210.7

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      ||+++|.++|.|+|++.++|+++++..+.+++||. ++||++||++.++|+..+|+++|+++||+++ |++|+|||+||+
T Consensus         1 ~~~a~i~g~G~~lP~~~vtn~d~e~~~~tsdewI~~rtGir~R~~a~~~e~~s~la~~Aa~~AL~~A-gi~~~dIDlII~   79 (323)
T COG0332           1 MMNAKILGIGSYLPERVVTNADLEKRVDTSDEWIETRTGIRERRIAADDETTSDLAVEAARKALEDA-GISPDDIDLIIV   79 (323)
T ss_pred             CCcceEEEEEeecCCcccChHHHHhccCCCcceeeeecCCceeeecCCCccHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            78999999999999999999999999999999998 9999999999999999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +|+||++.+|++|+.||+.||+. ++++||++.+|+|+++||.+|..+|++|.+  ++||||++|++|+.++++|  |.+
T Consensus        80 aT~tpd~~~Ps~A~~vq~~LG~~-~~~afDl~aaCsgf~yaL~~A~~~i~sG~~--k~vLVVg~e~~S~~ld~~d--R~t  154 (323)
T COG0332          80 ATSTPDHLFPSTACLVQARLGLG-GAPAFDLQAACSGFLYALSVADGLIRSGGY--KNVLVVGAETLSRILDWTD--RDT  154 (323)
T ss_pred             EcCCcccCCChHHHHHHHHhCCC-CcceeechhhhHHHHHHHHHHHHHHHcCCC--CEEEEEehhHhhccCCHhh--ccc
Confidence            99999999999999999999995 699999999999999999999999999988  9999999999999999988  554


Q ss_pred             ccccccccccceeEEEEecCCC---CeeEEeeccccccccccccccCCCC--------CCCcccchhhHHHHHHHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMDTCRPIP--------DSEAGNADLSLLSYLDCCAQSF  228 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~~~~p~~--------~~~~~~g~~~~~~~~~~~~~~~  228 (245)
                           ..+|||||+|+||++.+   +++.+.+++||++.+.+........        ....|+|+..|+..++.+.++.
T Consensus       155 -----~vlFgDGAgAvvl~~~~~~~~i~~~~l~sdg~~~~~l~~~~~~~~~~~~~~~~~~~~m~Gr~vfk~av~~~~~~~  229 (323)
T COG0332         155 -----CVLFGDGAGAVVLEATEDDNGILDTDLGSDGSQGDLLYLPGGGSATPKEESGGGLLVMDGREVFKFAVRAMPKAI  229 (323)
T ss_pred             -----eEEEcCCceEEEEecCCCCcCeeeeeeeccccCCCeeeccCCCCccccccccccceeeccHHHHHHHHHHHHHHH
Confidence                 35799999999999763   7999999999998865443222111        1125999999999999999999


Q ss_pred             HHHHHHhcchhhhhc
Q psy2407         229 KEYKKRVQYKIIVYN  243 (245)
Q Consensus       229 ~~~~~~~~~~~~~~~  243 (245)
                      ++.+++.+++++++.
T Consensus       230 ~~~L~~~~l~~~dId  244 (323)
T COG0332         230 EEVLEKAGLTPEDID  244 (323)
T ss_pred             HHHHHHcCCCHHHCC
Confidence            999999999988653

>PLN02577 hydroxymethylglutaryl-CoA synthase

Probab=100.00  E-value=1.5e-40  Score=303.57  Aligned_cols=226  Identities=26%  Similarity=0.355  Sum_probs=197.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHhhccceeeee--cCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSV--SLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~r~~--~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      |+++|.++|.|+|+++|+|+++++.+|.+++|+ ++||.+|++  +.++|++.+||++|+++||+++ |+++++||+||+
T Consensus         3 ~~vgI~gig~Y~P~~~v~n~eLa~~~g~~~~~~-~~GI~~r~~ava~~~Ed~~tmA~~AA~~aL~~a-gid~~~Idlliv   80 (459)
T PLN02577          3 KNVGILAMEVYFPPTCVQQEALEAHDGVSKGKY-TIGLGQDCMAFCTDVEDVISMSLTVVKSLLEKY-NIDPKQIGRLEV   80 (459)
T ss_pred             CccEEEEEEEeCCCeEEcHHHHHHHhCCCHHHH-hhccceeEeccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            579999999999999999999999999999998 578877775  4689999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHH---HHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccc
Q psy2407          80 CSESGIDFGKSMSTYIH---HYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNE  156 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~---~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~  156 (245)
                      +|+||++..|+++.+|+   +.||. +++.+||++++|+||+.||.+|..+|++|.++.++||||++|..+...++    
T Consensus        81 aTeT~~d~~ps~A~~v~~ll~~LG~-~~~~afDi~~AC~G~~~AL~~A~~~i~sg~~~~~~aLVV~aD~a~~~~~~----  155 (459)
T PLN02577         81 GSETVIDKSKSIKTFLMQLFEESGN-TDIEGVDSTNACYGGTAALLNCVNWVESSSWDGRYGLVVAADSAVYAEGP----  155 (459)
T ss_pred             EcCCCCCCCCchHHHHHHHHHHhCC-CCcEEeehhhhhHHHHHHHHHHHHHHHcCCCCCCeEEEEEechhhccCCC----
Confidence            99999999999999886   67787 58999999999999999999999999998544699999999999877542    


Q ss_pred             cccccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407         157 LTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKR  234 (245)
Q Consensus       157 ~~~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~  234 (245)
                             .++++||||+|+||++++. +.+.....|.+..+.+|||+|....  +.|+|++++.+|++++++++++++++
T Consensus       156 -------~e~t~GdGA~A~lv~~~~~-~~l~~~~~g~~~~~~~Df~rP~~~~~~~~vdG~~s~~~yl~~~~~~~~~~~~k  227 (459)
T PLN02577        156 -------ARPTGGAGAVAMLVGPNAP-IVFESKYRGSHMAHVYDFYKPDLASEYPVVDGKLSQTCYLMALDSCYKRFCEK  227 (459)
T ss_pred             -------CCCCCCcceEEEEEccCCC-ceeecccccccCcccchhcccCCCCCceEEcchHHHHHHHHHHHHHHHHHHHH
Confidence                   1456899999999998765 2344344567778899999999763  67999999999999999999999999


Q ss_pred             h------cchhhhh
Q psy2407         235 V------QYKIIVY  242 (245)
Q Consensus       235 ~------~~~~~~~  242 (245)
                      .      |+++.++
T Consensus       228 ~~~~~~~g~~~~d~  241 (459)
T PLN02577        228 YEKLEGKQFSISDA  241 (459)
T ss_pred             hhcccccCCCHHHc
Confidence            8      6666654

>TIGR01833 HMG-CoA-S_euk 3-hydroxy-3-methylglutaryl-CoA-synthase, eukaryotic clade

Probab=100.00  E-value=2.7e-39  Score=294.95  Aligned_cols=219  Identities=32%  Similarity=0.452  Sum_probs=191.5

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHhhccceeee--ecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKS--VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~r~--~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      +|+|.+++.|+|+++|+++++++..|.+++|+ .+||.+|+  ++.++|++.+|+++|++++|+++ ++++++||+||++
T Consensus         1 ~vgI~~ig~y~P~~~v~~~eLa~~~g~~~~k~-~~GI~~rr~av~~~~Ed~~tma~~AA~~lL~~a-~id~~~Id~Liv~   78 (454)
T TIGR01833         1 DVGILALEIYFPSQYVDQAELEKYDGVSAGKY-TIGLGQTKMGFCTDREDINSLCLTVVSKLMERY-NIDYNQIGRLEVG   78 (454)
T ss_pred             CcEEEEEEEeCCCeEEcHHHHHHhcCCCHHHh-eechhheecccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            58999999999999999999999999998887 47777777  67889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHc---CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYL---GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNEL  157 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~L---Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~  157 (245)
                      |.++++..|+.+.+|++.|   |+ +++.+||++++|+|++.||.+|..+|+++.++.++||||++|+....    +  .
T Consensus        79 TeS~~d~sps~a~~v~~lL~~lG~-~~~~~fDi~~AC~G~t~AL~~A~~~i~s~~~~~~~aLVV~sDia~y~----~--~  151 (454)
T TIGR01833        79 TETIIDKSKSVKTVLMQLFEESGN-TDVEGIDTTNACYGGTAALFNAINWIESSSWDGRYALVVAGDIAVYA----K--G  151 (454)
T ss_pred             CCCCCCCCCchHHHHHHHHHhcCC-CCceEEeccccchhHHHHHHHHHHHHHcCCcCCCeEEEEEecccccc----C--C
Confidence            9999999999999999855   45 68999999999999999999999999998545699999999995432    1  0


Q ss_pred             ccccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHh
Q psy2407         158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRV  235 (245)
Q Consensus       158 ~~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~  235 (245)
                        .   ..+++||||+|+||++++. +.+..+..+.|+.+++|||||..+.  |.++|++|+.||+++++++|+.|.++.
T Consensus       152 --~---~~~t~GaGAvAmLv~~~~~-~~~~~~~~~~~~~~~~DF~rP~~~~~~p~vdg~~S~~~Yl~a~~~~y~~y~~~~  225 (454)
T TIGR01833       152 --N---ARPTGGAGAVAMLIGPNAP-IVFERGLRGSHMQHAYDFYKPDLASEYPVVDGKLSIQCYLSALDRCYKSYCKKI  225 (454)
T ss_pred             --C---eeeccccceEEEEeccCcc-ceecCccceEEEeecccccCCCCCCcccccCCccCHHHHHHHHHHHHHHHHHHH
Confidence              1   2457999999999999887 4455543578889999999998854  579999999999999999999998775


Q ss_pred             c
Q psy2407         236 Q  236 (245)
Q Consensus       236 ~  236 (245)
                      +
T Consensus       226 ~  226 (454)
T TIGR01833       226 E  226 (454)
T ss_pred             H
Confidence            4

Hydroxymethylglutaryl(HMG)-CoA synthase is the first step of isopentenyl pyrophosphate (IPP) biosynthesis via the mevalonate pathway. This pathway is found mainly in eukaryotes, but also in archaea and some bacteria. This model is specific for eukaryotes.

>TIGR01835 HMG-CoA-S_prok 3-hydroxy-3-methylglutaryl CoA synthase, prokaryotic clade

Probab=100.00  E-value=1.2e-38  Score=287.57  Aligned_cols=224  Identities=36%  Similarity=0.577  Sum_probs=199.0

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSE   82 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~   82 (245)
                      |+|.+++.|+|+++++++++++..|.+++|+. ++|+++|+++.++|++.+|+++|+++||+++   ++++||+|+++|+
T Consensus         1 iGI~~i~~y~P~~~v~~~ela~~~g~~~~~~~~g~G~~~~~~~~~~ed~~~la~~Aa~~aL~~a---~~~~Id~li~~t~   77 (379)
T TIGR01835         1 IGIDKISFFTPQNYLDMTALAEARGVDPEKFHIGIGQKKMAVPPIDEDIVTMAASAAKPILDRN---DKQKIDMVIFGTE   77 (379)
T ss_pred             CCEeEEEEECCCEEeeHHHHHHHhCCCHHHHHhhcCceEEeeCCCCCCHHHHHHHHHHHHHHhC---CHhhCCEEEEEeC
Confidence            58999999999999999999999999999987 8999999999999999999999999999994   7999999999999


Q ss_pred             cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccc
Q psy2407          83 SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWA  162 (245)
Q Consensus        83 ~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~  162 (245)
                      ++++..|+.+.+|++.||++++++++|++++|+|++.||++|..+|++|..  ++||||++|.......  .     +  
T Consensus        78 s~~~~~~s~a~~v~~~Lgl~~~~~~~dv~~aC~gg~~aL~~A~~~i~s~~~--~~aLVv~~D~a~~~~~--~-----~--  146 (379)
T TIGR01835        78 SGIDQSKAAAVYVHGLLGLQPFCRSFELKQACYGATAALQMAKGHVALSPD--RKVLVIASDIAKYGLE--S-----P--  146 (379)
T ss_pred             CCCCCCCCHHHHHHHHhCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCC--CeEEEEEeehhhcccC--C-----C--
Confidence            999889999999999999976799999999999999999999999999955  9999999999654321  1     1  


Q ss_pred             cccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407         163 FFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV  241 (245)
Q Consensus       163 ~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (245)
                       ...+|||||+|+||+++++++.+...+ +.+.+...|||+|.+.. +.++|++++.+|++.+.+++++++++.|+++.+
T Consensus       147 -~~~~~GdGA~A~Ll~~~~~i~~~~~~~-~~~t~~~~df~~p~~~~~~~v~g~~s~~~y~~~~~~~~~~~l~~~g~~~~d  224 (379)
T TIGR01835       147 -GEPTQGAGAVAMLVSADPKLLAINEDS-VLYTDDIMDFWRPNYSTTALVDGQYSNEQYLNAFENAWNDYAKRTGLSLAD  224 (379)
T ss_pred             -CCccccCccEEEEEecCCCeeEEeccc-eeeecCCCCccCCCCCCceeECcHHHHHHHHHHHHHHHHHHHHHhCCCHHH
Confidence             246899999999999988877665432 35566778999998754 569999999999999999999999999999876


Q ss_pred             hc
Q psy2407         242 YN  243 (245)
Q Consensus       242 ~~  243 (245)
                      +.
T Consensus       225 id  226 (379)
T TIGR01835       225 FA  226 (379)
T ss_pred             cC
Confidence            53

This clade of hydroxymethylglutaryl-CoA (HMG-CoA) synthases is found in a limited spectrum of mostly gram-positive bacteria which make isopentenyl pyrophosphate (IPP) via the mevalonate pathway. This pathway is found primarily in eukaryotes and archaea, but the bacterial homologs are distinct, having aparrently diverged after being laterally transferred from an early eukaryote. HMG-CoA synthase is the first step in the pathway and joins acetyl-CoA with acetoacetyl-CoA with the release of one molecule of CoA. The Borellia sequence may have resulted from a separate lateral transfer event.

>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

Probab=100.00  E-value=9.9e-39  Score=280.36  Aligned_cols=228  Identities=30%  Similarity=0.395  Sum_probs=210.0

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.+++.|+|..+|+.+|+++.++.+++++. .+|+.++++..++|++.+|+++|++++|.++ ++|+++|+.|+++
T Consensus         1 ~~iGI~~~g~y~p~~~i~~~ela~~~g~d~~k~~~gl~~~e~sv~~~~ED~vTmaveAA~~~l~r~-~~D~~~Ig~v~vg   79 (377)
T COG3425           1 MMIGIVGIGAYIPRYRIKLEELARAWGVDPEKIKKGLGVEEKSVPPWDEDAVTMAVEAARNALKRA-DIDPSKIGAVIVG   79 (377)
T ss_pred             CccccceEEEeccceEeeHHHHHhhcCCChHHhhhccccccccCCCCchhHHHHHHHHHHHHHhcc-CCCHHHCceEEEe
Confidence            6899999999999999999999999999999998 7899999999999999999999999999996 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |.++.+...+++.+|++.||+++++.++|+.++|.+++.||+.|..++.+|..  +++|||++|+......  +      
T Consensus        80 TES~~d~~K~~at~v~~~lg~~~~~~~~d~~~AC~agT~aL~~a~~~v~s~~~--~~~LvI~sD~a~~~~~--~------  149 (377)
T COG3425          80 SESGPDAVKPTATIVAEALGLNPSARAADVEFACYAGTAALQAAIGWVESGMI--SYGLVIGADTAQYAPG--D------  149 (377)
T ss_pred             cCCCcccccchHHHHHHHhCCCCceehhhHHHHHHHHHHHHHHHHHHHHcCCc--cceEEEeehhhccCCC--c------
Confidence            99999999999999999999998999999999999999999999999999976  9999999999876531  1      


Q ss_pred             cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                        ..+++.|+||+|+|+++++.+ ...+...++|..+.+|||||.+. .|.++|+++..+|++.+++++++|+++.|+++
T Consensus       150 --~~E~t~GAGavA~lIg~n~~~-~a~~~~~~syt~d~~DFwRp~~~~yp~~dg~~s~~~Y~~~~~~a~~~~~~k~gls~  226 (377)
T COG3425         150 --ALEYTAGAGAVAFLIGKNPPI-VAEFEGTGSYTTDTPDFWRPDGQPYPYVDGRFSEPAYFKHVENAAKGYMEKTGLSP  226 (377)
T ss_pred             --ccCccCCCceEEEEEccCCCe-EEEecCceEEecCCCcccccCCCcccccCceecHHHHHHHHHHHHHHHHHHhCCCh
Confidence              136789999999999998654 45556789999999999999998 46799999999999999999999999999998


Q ss_pred             hhhc
Q psy2407         240 IVYN  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      .+|.
T Consensus       227 ~dfd  230 (377)
T COG3425         227 DDFD  230 (377)
T ss_pred             hhhC
Confidence            8664

>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=100.00  E-value=4.8e-38  Score=278.49  Aligned_cols=229  Identities=15%  Similarity=0.137  Sum_probs=197.0

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      .++|.++|+|+|+++++|+++.+.++.+++++. ++|+++||++.+++++.+|+++|+++||+++ |++++|||+||++|
T Consensus         3 ~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a-g~~~~~Id~li~~t   81 (326)
T PRK05963          3 SSRIAGFGHAVPDRRVENAEIEAQLGLETGWIERRTGIRCRRWAAPDETLSDLAASAGDMALSDA-GIERSDIALTLLAT   81 (326)
T ss_pred             ccEEEEEEEECCCCeecHHHHHHHcCCCHHHhhhccCCeEEEEcCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEC
Confidence            579999999999999999999999999988887 8999999999899999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      ++|++..|+.+.+|+++||++ ++++||++++|+|++.||++|..+++++ .  +++|||++|.++..+++++  +.   
T Consensus        82 ~~~d~~~p~~a~~v~~~Lg~~-~~~~~di~~~C~g~~~aL~~A~~~l~~~-~--~~aLVv~~d~~s~~~~~~~--~~---  152 (326)
T PRK05963         82 STPDHLLPPSAPLLAHRLGLQ-NSGAIDLAGACAGFLYALVLADGFVRAQ-G--KPVLVVAANILSRRINMAE--RA---  152 (326)
T ss_pred             CCCCCCCCcHHHHHHHHhCCC-CCceeeccchhhHHHHHHHHHHHHHHcC-C--CeEEEEEechhhccCCccc--cC---
Confidence            999999999999999999995 7899999999999999999999999987 3  8999999999998887655  22   


Q ss_pred             ccccccccceeEEEEecCCC----CeeEEeecccccccccccc----ccCCC---CCC-----CcccchhhHHHHHHHHH
Q psy2407         162 AFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMD----TCRPI---PDS-----EAGNADLSLLSYLDCCA  225 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~----~~~p~---~~~-----~~~~g~~~~~~~~~~~~  225 (245)
                        ...+|||||+|+||++.+    +++...+.++|++++.+..    ...|.   .+.     ..++|+..+..+++.+.
T Consensus       153 --~~~lfGDgA~A~ll~~~~~~~~~~l~~~~~t~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (326)
T PRK05963        153 --SAVLFADAAGAVVLAPSAKANSGVLGSQLISDGSHYDLIKIPAGGSARPFAPERDASEFLMTMQDGRAVFTEAVRMMS  230 (326)
T ss_pred             --ceEEEeecceEEEEEecCCCCCceEEEEEEEcCCCCCeEEeCCCCcCCCCcccccccccceEecCCHHHHHHHHHHHH
Confidence              145799999999998643    6778888888887764321    11121   111     12477888888999999


Q ss_pred             HHHHHHHHHhcchhhhhc
Q psy2407         226 QSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       226 ~~~~~~~~~~~~~~~~~~  243 (245)
                      +++++++++.|+++.++.
T Consensus       231 ~~~~~~L~~~gl~~~did  248 (326)
T PRK05963        231 GASQNVLASAAMTPQDID  248 (326)
T ss_pred             HHHHHHHHHcCCCHHHCC
Confidence            999999999999988764

>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=4.2e-37  Score=275.12  Aligned_cols=230  Identities=24%  Similarity=0.257  Sum_probs=189.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHH-HcCCCh---HHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAK-YRKLDT---VRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIEL   76 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~-~~~~~~---~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~   76 (245)
                      ++++|.++++|+|+++++|+++.. .++.+.   +++. ++||++||++.+++++.+|+++|+++||+++ |++++|||+
T Consensus         6 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~la~~Aa~~aL~~a-~~~~~dId~   84 (353)
T PRK12880          6 DKAKISGICVSVPEHKICIDDELESVFSNDIKTLKRMKKVIGLNTRYICDENTCVSDLGKHAANTLLQGL-NIDKNSLDA   84 (353)
T ss_pred             cccEEEEEEEECCCeEecHHHHHHHhcCcchhhhhhhhhccCceEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCE
Confidence            468999999999999999997544 443222   2344 6899999999899999999999999999997 999999999


Q ss_pred             EEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccc
Q psy2407          77 IITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNE  156 (245)
Q Consensus        77 li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~  156 (245)
                      ||++|++|++..|+++.+|+++||+++++++||++++|+|+++||++|..++++|..  + +|||++|..|..+++.+  
T Consensus        85 lI~~t~t~d~~~P~~a~~v~~~Lg~~~~~~~~di~~~C~g~~~aL~~A~~~i~~~~~--~-~LVv~~e~~S~~~~~~d--  159 (353)
T PRK12880         85 LIVVTQSPDFFMPSTACYLHQLLNLSSKTIAFDLGQACAGYLYGLFVAHSLIQSGLG--K-ILLICGDTLSKFIHPKN--  159 (353)
T ss_pred             EEEEcCCCCCCCCcHHHHHHHHhCCCCCceEEehhhhhHHHHHHHHHHHHHHHcCCC--C-EEEEEehhhhccCCccc--
Confidence            999999999999999999999999976889999999999999999999999999954  8 99999999999998766  


Q ss_pred             cccccccccccccceeEEEEecCCC-CeeEEeecccccccccccc----ccCCCC-------------CC----Ccccch
Q psy2407         157 LTMEWAFFEPSGGAGAVAMLISDKP-EIFQFDIGSNGYYSFEVMD----TCRPIP-------------DS----EAGNAD  214 (245)
Q Consensus       157 ~~~~~~~~~~~~GDGAaA~ll~~~~-~i~~~~~~~~g~~~~~~~~----~~~p~~-------------~~----~~~~g~  214 (245)
                      +.+     ..+|||||+|+||++++ ....+.+.++|++++.+..    ...|..             ..    -.|+|+
T Consensus       160 ~~~-----~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  234 (353)
T PRK12880        160 MNL-----APIFGDGVSATLIEKTDFNEAFFELGSDGKYFDKLIIPKGAMRIPKADIFNDDSLMQTEEFRQLENLYMDGA  234 (353)
T ss_pred             CCc-----eeeecccceEEEEEecCCCCceEEEEecCCCCCeEEecCCCcCCCccccccccccccccccccCceEEEcCH
Confidence            222     46899999999998643 1112466788887765421    101110             00    138899


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407         215 LSLLSYLDCCAQSFKEYKKRVQYKIIVY  242 (245)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (245)
                      ..+..+++.+.+++++++++.|+++.+.
T Consensus       235 ~v~~~~~~~~~~~i~~~L~~~gl~~~di  262 (353)
T PRK12880        235 NIFNMALECEPKSFKEILEFSKVDEKDI  262 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHC
Confidence            9999999999999999999999987754

>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=1.4e-35  Score=263.06  Aligned_cols=231  Identities=16%  Similarity=0.115  Sum_probs=193.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++++|.++++|+|+++++|+++.+..+.+.+++. ++||++||++. +++..+|+.+|+++||+++ |++++|||+||++
T Consensus         3 ~~~~I~~~g~~lP~~~v~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~-~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~   80 (329)
T PRK07204          3 RYISIKGIGTYLPKRKVDSLELDKKLDLPEGWVLKKSGVKTRHFVD-GETSSYMGAEAAKKAVEDA-KLTLDDIDCIICA   80 (329)
T ss_pred             CCcEEEEEEEeCCCceecHHHHHHhhCCCHhHhhhccCceEEeecC-CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            4689999999999999999999999998888887 89999999976 8999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCC-CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNR-NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~-~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      ++++++..|+.+.+|+++||+++ .+++++++++|+|++.||.+|..++++|.+  +++|||++|.++..+++.+  +. 
T Consensus        81 ~~~~~~~~p~~a~~v~~~lgl~~~~~~~~~v~~~C~~~~~al~~a~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~--~~-  155 (329)
T PRK07204         81 SGTIQQAIPCTASLIQEQLGLQHSGIPCFDINSTCLSFITALDTISYAIECGRY--KRVLIISSEISSVGLNWGQ--NE-  155 (329)
T ss_pred             CCCCCCCCccHHHHHHHHhCCCCCCceEEEccchhHHHHHHHHHHHHHHHCCCC--CEEEEEEeccccCCCCccc--Cc-
Confidence            99998888999999999999964 379999999999999999999999999966  9999999999988766543  11 


Q ss_pred             ccccccccccceeEEEEecCCC---CeeEEeecccccccccc--cc---------ccCCCCCC--CcccchhhHHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEV--MD---------TCRPIPDS--EAGNADLSLLSYLDC  223 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~--~~---------~~~p~~~~--~~~~g~~~~~~~~~~  223 (245)
                          ...+|||||+|+||++++   +++...+.+++.+++..  +.         .+.+....  ..++|+..++.+.+.
T Consensus       156 ----~~~lfGDGAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  231 (329)
T PRK07204        156 ----SCILFGDGAAAVVITKGDHSSRILASHMETYSSGAHLSEIRGGGTMIHPREYSEERKEDFLFDMNGRAIFKLSSKY  231 (329)
T ss_pred             ----ceEEEecccEEEEEEEcCCCCcEEEEEEEEecCCCCceEEecCCcCCCCcccccccccCceEEECCHHHHHHHHHH
Confidence                135799999999999753   67777777777654421  10         11111111  136778888888999


Q ss_pred             HHHHHHHHHHHhcchhhhhc
Q psy2407         224 CAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       224 ~~~~~~~~~~~~~~~~~~~~  243 (245)
                      +.+++++++++.|+++.++.
T Consensus       232 ~~~~i~~~L~~~gl~~~did  251 (329)
T PRK07204        232 LMKFIDKLLMDAGYTLADID  251 (329)
T ss_pred             HHHHHHHHHHHcCCCHHHCC
Confidence            99999999999999998764

>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional

Probab=100.00  E-value=2e-35  Score=261.92  Aligned_cols=230  Identities=15%  Similarity=0.129  Sum_probs=194.0

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |.++|.++|+|+|+++|+|+|+++.++.+..++. ++||++|+++.++++..+|+.+|+++||+++ |++++|||.||++
T Consensus         1 ~~v~I~~~g~~lP~~~v~~~e~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~aL~~a-g~~~~dId~vi~~   79 (326)
T CHL00203          1 MGVHILSTGSSVPNFSVENQQFEDIIETSDHWISTRTGIKKRHLAPSSTSLTKLAAEAANKALDKA-HMDPLEIDLIILA   79 (326)
T ss_pred             CccEEEEEEEECCCeEEcHHHHHHhcCCChhhEeeccCeEEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5789999999999999999999999987777776 8999999999999999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++.. ..+..+++.||++ ++++++++++|+|++.||.+|..+|++|.+  +++|||++|.++..+++++  +.  
T Consensus        80 s~~~~~~~-~~~~~v~~~Lg~~-~~~~~~v~~~Casg~~al~~A~~~i~sg~~--~~~Lvv~~e~~s~~~~~~~--~~--  151 (326)
T CHL00203         80 TSTPDDLF-GSASQLQAEIGAT-RAVAFDITAACSGFILALVTATQFIQNGSY--KNILVVGADTLSKWIDWSD--RK--  151 (326)
T ss_pred             eCCCCCCC-chHHHHHHHhCCC-CCceeeecccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhhCcCCccc--CC--
Confidence            98886554 4578899999994 788999999999999999999999999976  9999999999999887765  21  


Q ss_pred             cccccccccceeEEEEecCCC--CeeEEeeccccccccccccccCC------------CCCC--CcccchhhHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMDTCRP------------IPDS--EAGNADLSLLSYLDCC  224 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~~~~p------------~~~~--~~~~g~~~~~~~~~~~  224 (245)
                         ...+|||||+|+||++.+  +++.+.+.++|.++..+.....|            ....  -.|+|+..+..+++.+
T Consensus       152 ---~~~~fgDga~A~ll~~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  228 (326)
T CHL00203        152 ---TCILFGDGAGAAIIGASYENSILGFKLCTDGKLNSHLQLMNKPVNNQSFGTTKLPQGQYQSISMNGKEVYKFAVFQV  228 (326)
T ss_pred             ---ceEEEcceeeEEEEEEcCCCCeEEEEEEEcCCCcceEEecCCCCCcccccccccccCCcceEEECCHHHHHHHHHHH
Confidence               145799999999998754  67788888888876543221111            0011  1377877778788899


Q ss_pred             HHHHHHHHHHhcchhhhhc
Q psy2407         225 AQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       225 ~~~~~~~~~~~~~~~~~~~  243 (245)
                      .+++++++++.|+++.++.
T Consensus       229 ~~~i~~~L~~~g~~~~did  247 (326)
T CHL00203        229 PAVIIKCLNALNISIDEVD  247 (326)
T ss_pred             HHHHHHHHHHcCCCHHHCC
Confidence            9999999999999988764

>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=3.1e-35  Score=260.18  Aligned_cols=230  Identities=17%  Similarity=0.152  Sum_probs=195.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++|+|+|+++++++|+.+..+.+.+++. ++|+++||++.++++..+|+.+|+++||+++ |+++++||+||++
T Consensus         3 ~~~~I~~ig~~~P~~~v~~~e~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~a-g~~~~~Id~li~~   81 (325)
T PRK12879          3 SYARITGIGTYVPPRVLTNDDLETFIDTSDEWIVQRTGIKERRIAHVEEYTSDLAIKAAERALARA-GLDAEDIDLIIVA   81 (325)
T ss_pred             CCCEEEEEEEECCCcEEcHHHHHHhcCCCHHHhhhccCceEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            6799999999999999999999999888878877 8999999999899999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      ++++++..|+.+..+++.||++ ++++++++++|+|++.||.+|..+|++|..  ++||||++|+++..+++.+  +.  
T Consensus        82 ~~~~~~~~~~~a~~l~~~lg~~-~~~~~~v~~~C~~~~~al~~A~~~l~~g~~--~~~Lvv~~e~~s~~~~~~~--~~--  154 (325)
T PRK12879         82 TTTPDYLFPSTASQVQARLGIP-NAAAFDINAACAGFLYGLETANGLITSGLY--KKVLVIGAERLSKVTDYTD--RT--  154 (325)
T ss_pred             cCCCCCCCChHHHHHHHHhCCC-CCcEEEECccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCccc--cC--
Confidence            9998888999999999999995 688999999999999999999999999966  9999999999988776554  21  


Q ss_pred             cccccccccceeEEEEecCCC---CeeEEeecccccccccc--ccccCCCCC-------CCcccchhhHHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEV--MDTCRPIPD-------SEAGNADLSLLSYLDCCAQSF  228 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~--~~~~~p~~~-------~~~~~g~~~~~~~~~~~~~~~  228 (245)
                         ...+|||||+|+||++++   +++...+.+++.+++.+  ..++.+...       ...++|+..+...++.+.+++
T Consensus       155 ---~~~~~GDgAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  231 (325)
T PRK12879        155 ---TCILFGDGAGAVVLEATENEPGFIDYVLGTDGDGGDILYRTGLGTTMDRDALSGDGYIVQNGREVFKWAVRTMPKGA  231 (325)
T ss_pred             ---ceEEEeecceEEEEEecCCCCCeEEEEEEEcCCCCCeEEEcCCCCCCCccccccCccEEEcCHHHHHHHHHHHHHHH
Confidence               135799999999999854   57777788888776543  222221111       113667777777788899999


Q ss_pred             HHHHHHhcchhhhh
Q psy2407         229 KEYKKRVQYKIIVY  242 (245)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (245)
                      ++++++.|+++.++
T Consensus       232 ~~~L~~~g~~~~di  245 (325)
T PRK12879        232 RQVLEKAGLTKDDI  245 (325)
T ss_pred             HHHHHHcCCCHHHC
Confidence            99999999998765

>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III

Probab=100.00  E-value=7.7e-35  Score=263.05  Aligned_cols=230  Identities=19%  Similarity=0.189  Sum_probs=192.8

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++++|.++|+|+|+++++|+++.+.++.+.+++. ++||++|+++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus        46 ~~~~I~g~g~~lP~~~v~n~el~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~aL~~a-gi~~~dId~li~~  124 (379)
T PLN02326         46 SGSKLVGCGSAVPKLLITNDDLSKLVDTSDEWIATRTGIRNRRVLSGDETLTSLAVEAAKKALEMA-GVDPEDVDLVLLC  124 (379)
T ss_pred             CCcEEEEEEEECCCceecHHHHHHhcCCchhheecccCcceEeecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            4689999999999999999999999888788887 8999999999899999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++.. +.+..+++.||++ +++++|++++|+|++.||++|..+|++|.+  +++|||++|.++..+++.+  +.. 
T Consensus       125 s~~~~~~~-~~a~~v~~~LG~~-~~~~~dv~~~Ca~~~~aL~~A~~~l~~g~~--~~vLVv~~e~~s~~~~~~d--~~~-  197 (379)
T PLN02326        125 TSSPDDLF-GSAPQVQAALGCT-NALAFDLTAACSGFVLGLVTAARFIRGGGY--KNVLVIGADALSRYVDWTD--RGT-  197 (379)
T ss_pred             eCCCCccC-cHHHHHHHHhCCC-CCceeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhcCCCCccc--cCc-
Confidence            98886654 5688999999995 889999999999999999999999999966  9999999999998887655  221 


Q ss_pred             cccccccccceeEEEEecCCC----CeeEEeeccccccccccccccC---------CC---------C-CC--Ccccchh
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMDTCR---------PI---------P-DS--EAGNADL  215 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~~~~---------p~---------~-~~--~~~~g~~  215 (245)
                          ..+|||||+|+||++.+    +++.+.+.++|.+++.+.....         +.         . ..  -.|+|+.
T Consensus       198 ----~~lfGDGAaAvlL~~~~~~~~~i~~~~~~t~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  273 (379)
T PLN02326        198 ----CILFGDGAGAVVLQACDDDEDGLLGFDMHSDGNGHKHLHATFKGEDDDSSGGNTNGVGDFPPKKASYSCIQMNGKE  273 (379)
T ss_pred             ----eEEEcceeEEEEEEEcCCCCCceEEEEEEEcCCCCCeEEecCCCCcccccccccccccccccccccccceEecCHH
Confidence                24799999999999743    5778888888877654311100         00         0 01  1267777


Q ss_pred             hHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         216 SLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .++..++.+.+++++++++.|+++.++.
T Consensus       274 v~~~~~~~~~~~i~~~L~~~gl~~~dId  301 (379)
T PLN02326        274 VFKFAVRCVPQVIESALQKAGLTAESID  301 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence            7887788999999999999999987653

>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=1.4e-34  Score=257.50  Aligned_cols=235  Identities=18%  Similarity=0.194  Sum_probs=190.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc-------CCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCC
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR-------KLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNS   73 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~-------~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~d   73 (245)
                      .+++|.++++|+|+++++|+++.+.+       +.+++++. ++||++|+++.++++..+|+.+|+++||+++ |++++|
T Consensus         4 ~~v~I~~~g~~lP~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~~   82 (338)
T PRK09258          4 SNVAILSLAYELAPVVVTSSEIEERLAPLYERLRLPPGQLEALTGIRERRWWPEGTQLSDGAIAAGRKALAEA-GIDPSD   82 (338)
T ss_pred             cceEEEEEEecCCCccCcHHHHHHHhhhcccccCCChhHhhhhcCceeEecCCCCCCHHHHHHHHHHHHHHHc-CCCHHH
Confidence            46999999999999999999999764       34566676 7899999998889999999999999999997 999999


Q ss_pred             cCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCc
Q psy2407          74 IELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTED  153 (245)
Q Consensus        74 Id~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~  153 (245)
                      ||+||++|+++++..|+.+..++++||+++++++++++++|+|++.||++|..+|++|.+  ++|||+++|+++..+++.
T Consensus        83 Id~li~~s~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~~~~~al~~A~~~i~~g~~--~~~Lvv~~e~~s~~~~~~  160 (338)
T PRK09258         83 IGLLINTSVCRDYLEPATACRVHHNLGLPKSCANFDVSNACLGFLNGMLDAANMIELGQI--DYALVVSGESAREIVEAT  160 (338)
T ss_pred             CCEEEEEcCCCCCCCChHHHHHHHHcCCCCCCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEecccchhccch
Confidence            999999999988899999999999999965789999999999999999999999999966  999999999998876542


Q ss_pred             ------cccc--ccccccccccccceeEEEEecCCC------CeeEEeeccccccccccccccCCCCCCCcccchhhHHH
Q psy2407         154 ------KNEL--TMEWAFFEPSGGAGAVAMLISDKP------EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLS  219 (245)
Q Consensus       154 ------~~~~--~~~~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~  219 (245)
                            ++..  .....+...+|||||+|+||++++      +++.....+++.+.+.    +++......++++..++.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~GDGA~A~ll~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~  236 (338)
T PRK09258        161 IDRLLAPETTREDFAQSFATLTLGSGAAAAVLTRGSLHPRGHRLLGGVTRAATEHHEL----CQGGRDGMRTDAVGLLKE  236 (338)
T ss_pred             hhhhccCccchhhhhhccceEEecccceEEEEecCCCCCCcceeeeeeeecCCCcccc----cccCccceEEcHHHHHHH
Confidence                  1000  001112245799999999999742      3444444555554331    111112224788899999


Q ss_pred             HHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         220 YLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      +.+.+.+++++++++.|+++.++.
T Consensus       237 ~~~~~~~~~~~~L~~~g~~~~did  260 (338)
T PRK09258        237 GVELAVDTWEAFLAQLGWAVEQVD  260 (338)
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHCC
Confidence            999999999999999999987653

>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems

Probab=100.00  E-value=2.6e-34  Score=253.39  Aligned_cols=230  Identities=18%  Similarity=0.184  Sum_probs=197.1

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      +++|.++++|+|+++++++++.+.++.+.+++. ++|+++||++.+++++.+|+.+|+++||+++ |+++++||.||+++
T Consensus         1 ~~~I~~i~~~lP~~~~~~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~A~~~al~~a-g~~~~~Id~li~~~   79 (320)
T cd00830           1 NARILGIGSYLPERVVTNDELEKRLDTSDEWIRTRTGIRERRIADPGETTSDLAVEAAKKALEDA-GIDADDIDLIIVAT   79 (320)
T ss_pred             CCEEEEEEEECCCcEEcHHHHHHHcCCCHHHhhhccCceEEeeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEc
Confidence            579999999999999999999999988888877 8999999999888999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      +++++..|+.+.+|++.||++ ++++++++++|+|++.+|.+|..+|++|..  +++||+++|.++..+++.+  +.   
T Consensus        80 ~~~~~~~~~~~~~l~~~lg~~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~--~~---  151 (320)
T cd00830          80 STPDYLFPATACLVQARLGAK-NAAAFDINAACSGFLYGLSTAAGLIRSGGA--KNVLVVGAETLSRILDWTD--RS---  151 (320)
T ss_pred             CCCCCCCCcHHHHHHHHhCCC-CCcEeeccccchHHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCccc--CC---
Confidence            998877899999999999995 789999999999999999999999999965  9999999999998776544  11   


Q ss_pred             ccccccccceeEEEEecCCC---CeeEEeecccccccccccc----ccCCCCC------CCcccchhhHHHHHHHHHHHH
Q psy2407         162 AFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD----TCRPIPD------SEAGNADLSLLSYLDCCAQSF  228 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~----~~~p~~~------~~~~~g~~~~~~~~~~~~~~~  228 (245)
                        ...+|||||+|+||++.+   +++.+.+.+++.+++.+.-    ..+|...      ...++++..+..+.+.+.+++
T Consensus       152 --~~~~~GDgAaA~ll~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  229 (320)
T cd00830         152 --TAVLFGDGAGAVVLEATEEDPGILDSVLGSDGSGADLLTIPAGGSRSPFEDAEGGDPYLVMDGREVFKFAVRLMPESI  229 (320)
T ss_pred             --ceEEEeccceEEEEEecCCCCcEEEEEEEEcCCCCCeEEeCCCCcCCccccccccCccEEEcChHHHHHHHHhhHHHH
Confidence              246899999999999864   5888888888887764321    1112110      113778888888999999999


Q ss_pred             HHHHHHhcchhhhhc
Q psy2407         229 KEYKKRVQYKIIVYN  243 (245)
Q Consensus       229 ~~~~~~~~~~~~~~~  243 (245)
                      ++++++.|+++.++.
T Consensus       230 ~~~l~~~g~~~~di~  244 (320)
T cd00830         230 EEALEKAGLTPDDID  244 (320)
T ss_pred             HHHHHHcCCCHHHCC
Confidence            999999999987653

It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.

>PRK04262 hypothetical protein; Provisional

Probab=100.00  E-value=2.3e-34  Score=257.18  Aligned_cols=227  Identities=24%  Similarity=0.266  Sum_probs=181.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++++|+++.+.++.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus         1 ~~v~I~~~g~ylP~~~v~~~el~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~   79 (347)
T PRK04262          1 MMVGIVGYGAYIPRYRIKVEEIARVWGDDPEAIKRGLGVEEKSVPGPDEDTATIAVEAARNALKRA-GIDPKEIGAVYVG   79 (347)
T ss_pred             CceeEEEEEEeCCCEEecHHHHHHHhCcCHHHHhhccCeeeeecCCCCcCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            6799999999999999999999999999999987 8999999999999999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+.++++.||+++++++++++++|+|++.+|+.|..+|++|..  +++|||++|+..  .++.+     .
T Consensus        80 s~~~~~~~p~~a~~v~~~Lgl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~--~~aLVv~~e~~~--~~~~~-----~  150 (347)
T PRK04262         80 SESHPYAVKPTATIVAEALGATPDLTAADLEFACKAGTAALQAAMGLVKSGMI--KYALAIGADTAQ--GAPGD-----A  150 (347)
T ss_pred             ecCCCcccccHHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeeec--cCCCC-----C
Confidence            99998888999999999999965688999999999999999999999999966  999999999842  22222     1


Q ss_pred             cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhH-HHHHHHHHHHHHHHHHHhcch
Q psy2407         161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSL-LSYLDCCAQSFKEYKKRVQYK  238 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~  238 (245)
                      +   ..+|||||+|+||++.+....+. .+ ..+..+..++|++.... +.....+.. ..|++.+.+++++++++.|++
T Consensus       151 ~---~~~~GDGA~A~ll~~~~~~~~i~-~~-~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~  225 (347)
T PRK04262        151 L---EYTAAAGGAAFIIGKEEVIAEIE-AT-YSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFKHIISAAKGLMEKLGLK  225 (347)
T ss_pred             C---CCcCCCCcEEEEEecCcccceee-cc-ccccccchhhcCCCCCcCCCcCceecchHHHHHHHHHHHHHHHHHhCcC
Confidence            1   24689999999999755321111 11 11222334566643321 111112222 256788999999999999998


Q ss_pred             hhhhc
Q psy2407         239 IIVYN  243 (245)
Q Consensus       239 ~~~~~  243 (245)
                      +.++.
T Consensus       226 ~~dId  230 (347)
T PRK04262        226 PSDYD  230 (347)
T ss_pred             HHHhc
Confidence            87653

>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=8e-34  Score=250.52  Aligned_cols=228  Identities=20%  Similarity=0.161  Sum_probs=196.9

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      |+.++|.++++|+|+++++++++.+..+.+++++. ++|+++|+++.++++..+|+.+|+++||+++ |+++++||.+++
T Consensus         1 ~~~v~I~ai~~~lP~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~a-gl~~~~id~vi~   79 (319)
T PRK09352          1 MMYAKILGTGSYLPERVVTNDDLEKMVDTSDEWIVTRTGIKERRIAAPDETTSDLATEAAKKALEAA-GIDPEDIDLIIV   79 (319)
T ss_pred             CCceEEEEEEEECCCeEEcHHHHHHHcCCCHHHhhhhcCeEEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            89999999999999999999999999888777776 8999999998899999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +++++++..|+.+..|+..||+ .++++++++++|++++.||..|..+|++|.+  +++||+++|+++..+++.+  +. 
T Consensus        80 ~~~~~~~~~~~~~~~i~~~lG~-~~~~~~~v~~~Casg~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~~--~~-  153 (319)
T PRK09352         80 ATTTPDYAFPSTACLVQARLGA-KNAAAFDLSAACSGFVYALSTADQFIRSGAY--KNVLVIGAEKLSRIVDWTD--RS-  153 (319)
T ss_pred             EcCCCCCCCchHHHHHHHHhCC-CCCcEeeccccchhHHHHHHHHHHHHHcCCC--CEEEEEEehhhccccCccc--CC-
Confidence            9998877788999999999999 5789999999999999999999999999966  9999999999988776544  11 


Q ss_pred             ccccccccccceeEEEEecCCC--CeeEEeeccccccccccccccCCCCC--------CCcccchhhHHHHHHHHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMDTCRPIPD--------SEAGNADLSLLSYLDCCAQSFK  229 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~~~~p~~~--------~~~~~g~~~~~~~~~~~~~~~~  229 (245)
                          ...+|||||+|+||++++  +++.+.+.++|++.+.+.   .|...        .-.++++..++.+.+.+.++++
T Consensus       154 ----~~~~~gDGaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  226 (319)
T PRK09352        154 ----TCVLFGDGAGAVVLGASEEPGILSTHLGSDGSYGDLLY---LPGGGSRGPASPGYLRMEGREVFKFAVRELAKVAR  226 (319)
T ss_pred             ----ceEEEeccceEEEEEEcCCCCeEEEEEEEcCCCCCeEE---eCCCCCCCCCCCCceEECCHHHHHHHHHHHHHHHH
Confidence                135799999999999864  577888888888765332   12221        1136777788888999999999


Q ss_pred             HHHHHhcchhhhh
Q psy2407         230 EYKKRVQYKIIVY  242 (245)
Q Consensus       230 ~~~~~~~~~~~~~  242 (245)
                      +++++.|+++.++
T Consensus       227 ~~l~~~g~~~~di  239 (319)
T PRK09352        227 EALEAAGLTPEDI  239 (319)
T ss_pred             HHHHHcCCCHHHC
Confidence            9999999988765

>PRK06840 hypothetical protein; Validated

Probab=100.00  E-value=7.6e-34  Score=252.94  Aligned_cols=233  Identities=19%  Similarity=0.217  Sum_probs=188.6

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++++++++.+..+.+.+++. ++|+++||++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus         3 ~~v~I~~~~~~lP~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~~~~~~la~~Aa~~aL~~a-g~~~~dId~li~~   81 (339)
T PRK06840          3 MNVGIVGTGVYLPKDVMTAEEIAEKTGIPEEVVIEKFGIYEKPVPGPEDHTSDMAIAAAKPALKQA-GVDPAAIDVVIYI   81 (339)
T ss_pred             CceEEEEEEEeCCCcccCHHHHHHHhCCCHHHHhhhcCcceEeeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEe
Confidence            6899999999999999999999999999888887 8999999999888999999999999999997 9999999999977


Q ss_pred             ec-cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhc-CCCCCCeEEEEEeccccccccCcccccc
Q psy2407          81 SE-SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILS-KVSPGAKALVIATDISRFFVTEDKNELT  158 (245)
Q Consensus        81 t~-~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~s-g~~~~~~aLVv~~e~~s~~~~~~~~~~~  158 (245)
                      ++ ++++..|+.+.+|+++||++ ++++++++++|+|++.||.+|..+|++ |.+  +++|||++|..+..+++.++  .
T Consensus        82 ~~~~~~~~~p~~a~~l~~~lGl~-~~~~~~v~~~C~~~~~al~~A~~~l~~~g~~--~~~Lvv~~~~~s~~~~~~~~--~  156 (339)
T PRK06840         82 GSEHKDYPVWSSAPKIQHEIGAK-NAWAFDIMAVCASFPIALKVAKDLLYSDPSI--ENVLLVGGYRNSDLVDYDNP--R  156 (339)
T ss_pred             ccCCCCCCCCchHHHHHHHhCCC-CcccccccccchHHHHHHHHHHHHHhcCCCc--cEEEEEeecccccccCcCCC--C
Confidence            54 56777899999999999994 789999999999999999999999999 766  99999999999888776552  1


Q ss_pred             cccccccccccceeEEEEecCCC---CeeEEeecccccccccccc----ccCCCC-CC-------CcccchhhHHHH---
Q psy2407         159 MEWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD----TCRPIP-DS-------EAGNADLSLLSY---  220 (245)
Q Consensus       159 ~~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~----~~~p~~-~~-------~~~~g~~~~~~~---  220 (245)
                      ...   ..+|||||+|+||++++   +++...+.+++++++.+..    .-.|.. ..       ..+.+...+...   
T Consensus       157 ~~~---~~~~GDgAaA~ll~~~~~~~~il~~~~~t~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (339)
T PRK06840        157 TRF---MFNFAAGGSAALLKKDAGKNRILGSAIITDGSFSEDVRVPAGGTKQPASPETVENRQHYLDVIDPESMKERLDE  233 (339)
T ss_pred             eee---eccCCCceeEEEEEecCCCCceEEEEEEEcCCccceEEecCCCcCCCCcccccccccceEEEcCcHHHHHHhHh
Confidence            111   12489999999999753   6777888888887765421    111210 00       013334444433   


Q ss_pred             --HHHHHHHHHHHHHHhcchhhhhc
Q psy2407         221 --LDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       221 --~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                        +..+.+++++++++.|+++.++.
T Consensus       234 ~~~~~~~~~i~~~L~~~gl~~~did  258 (339)
T PRK06840        234 VSIPNFLKVIREALRKSGYTPKDID  258 (339)
T ss_pred             hHHHHHHHHHHHHHHHcCCCHHHCC
Confidence              34577999999999999988764

>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III

Probab=100.00  E-value=9.3e-34  Score=250.11  Aligned_cols=231  Identities=18%  Similarity=0.186  Sum_probs=197.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |.++|.++++|+|+++++++++.+.++.+..++. ++|+++|++..+++++.+|+.+|+++||+++ |+++++||.++++
T Consensus         1 ~~~~I~~i~~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~a-gl~~~~Id~~i~~   79 (318)
T TIGR00747         1 MYAGILGTGSYLPEKVLTNADLEKMVDTSDEWIVTRTGIKERRIAADDETSSTMGFEAAKRAIENA-GISKDDIDLIIVA   79 (318)
T ss_pred             CCCEEEEEEEECCCceecHHHHHHhcCCchHHeecccCceEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5689999999999999999999999887777776 7999999999899999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      ++++++..|+.+.++++.||++ ++++++++++|+|++.+|+.|..+|++|.+  +++||+++|.++..+++.+  +.  
T Consensus        80 ~~~~~~~~~~~a~~l~~~lGl~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~~Lvv~~e~~~~~~~~~~--~~--  152 (318)
T TIGR00747        80 TTTPDHAFPSAACMVQAYLGIK-GIPAFDLSAACAGFIYALSVAKQYIESGKY--KTVLVVGAEKLSSTLDWTD--RG--  152 (318)
T ss_pred             CCCCCCCCChHHHHHHHHhCCC-CCcEeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEehhhcCcCCcCC--CC--
Confidence            9998888899999999999994 689999999999999999999999999966  9999999999988776654  11  


Q ss_pred             cccccccccceeEEEEecCCC---CeeEEeeccccccccccc--cccCCCCC-C--CcccchhhHHHHHHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVM--DTCRPIPD-S--EAGNADLSLLSYLDCCAQSFKEYK  232 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~--~~~~p~~~-~--~~~~g~~~~~~~~~~~~~~~~~~~  232 (245)
                         ...+|||||+|+||++++   +++.+.+.+++++++.+.  ..+.+..+ .  ..+++...++.+++.+.+++++++
T Consensus       153 ---~~~~~GDGAaA~lL~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  229 (318)
T TIGR00747       153 ---TCVLFGDGAGAVVLGESEDPGGIISTHLGADGTQGEALYLPAGGRPTSGPSPFITMEGNEVFKHAVRKMGDVVEETL  229 (318)
T ss_pred             ---eEEEEecceeEEEEeecCCCCcEEEEEEEEcCCCcceEEECCCCcCCCCCCCceEECCHHHHHHHHHHHHHHHHHHH
Confidence               134699999999999864   477788888888776532  22222111 1  236778888899999999999999


Q ss_pred             HHhcchhhhhc
Q psy2407         233 KRVQYKIIVYN  243 (245)
Q Consensus       233 ~~~~~~~~~~~  243 (245)
                      ++.|+++.++.
T Consensus       230 ~~~g~~~~di~  240 (318)
T TIGR00747       230 EANGLDPEDID  240 (318)
T ss_pred             HHcCCCHHHCC
Confidence            99999987654

Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.

>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative

Probab=100.00  E-value=5.8e-34  Score=254.34  Aligned_cols=226  Identities=22%  Similarity=0.257  Sum_probs=180.0

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      +++|.++|+|+|+++++|+++.+.++.+++|+. ++|+++|+++.+++++.+|+++|+++||+++ |++++|||+||++|
T Consensus         1 ~~~I~g~g~~lP~~~v~n~~l~~~~~~~~~~i~~~~Gi~~r~v~~~~~~~~~la~~Aa~~aL~~a-gl~~~dID~li~~s   79 (345)
T TIGR00748         1 MAGIVGYGAYIPMYRIKVEEIARVWGKDPESISNGLPVEEKAVPGLDEDTATIGVEAARNALKRA-KIDPKDIGAVYVGS   79 (345)
T ss_pred             CccEEEEEEeCCCeeecHHHHHHHhCCCHhHeeeccceeeeecCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEe
Confidence            468999999999999999999999998889987 8999999999899999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      +++++..|+.+..+++.||++++++++|++++|+|++.||.+|..+|++|.+  +++|||++|.++..  +.+     .+
T Consensus        80 ~~~~~~~p~~a~~v~~~LGl~~~~~~~dv~~aC~g~~~al~~A~~~i~sg~~--~~vLVv~~d~~~~~--~~~-----~~  150 (345)
T TIGR00748        80 ESHPYAVKPTATIVAEAIGATPDLTAADLEFACKAGTAGIQACMGLVASGMI--KYGLAIGADTAQGA--PGD-----AL  150 (345)
T ss_pred             cCCCccccchHHHHHHHcCCCCCceEEEHHHhHHHHHHHHHHHHHHHHcCCC--CEEEEEEEeecccC--CCc-----cC
Confidence            9998888999999999999965789999999999999999999999999966  99999999998632  222     22


Q ss_pred             ccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhH-HHHHHHHHHHHHHHHHHhcchh
Q psy2407         162 AFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSL-LSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                         ..+|||||+|+||++.+....+. .+ ..+..+..++|++.... +...+++.. ..+.+...+++++++++.|+++
T Consensus       151 ---~~~~GDGAaA~vl~~~~~~~~~~-~~-~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gl~~  225 (345)
T TIGR00748       151 ---EYTAGAGGAAYIIGEKNTVAYFE-GT-YSYTTDTPDFWRREGEPYPRHGGRFTGEPAYFHHVVTAAKGLMEKLGLTP  225 (345)
T ss_pred             ---cccCCCceEEEEEccCCcceEee-cc-cceecccccccccCCCcCCCcCCeecChHHHHHHHHHHHHHHHHHcCCCH
Confidence               35689999999999765432221 11 11222233566653221 222222222 2345556688899999999988


Q ss_pred             hhhc
Q psy2407         240 IVYN  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      .++.
T Consensus       226 ~did  229 (345)
T TIGR00748       226 EDFD  229 (345)
T ss_pred             HHcC
Confidence            7653

Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.

>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=100.00  E-value=9.3e-34  Score=255.91  Aligned_cols=238  Identities=16%  Similarity=0.135  Sum_probs=181.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCC-------hHHHh-hccceeeeecCC-----CCCHHHHHHHHHHHHHHhcCC
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLD-------TVRFE-NLLMQQKSVSLP-----YEDPVSFAINAAAPLIDNLSN   68 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~-------~~~~~-~~Gi~~r~~~~~-----~e~~~~la~~Aa~~aL~~a~g   68 (245)
                      |+++|.++|+|+|+++++|+++.++++..       .+|+. ++||++||++.+     +++..+|+.+|+++||+++ |
T Consensus         1 ~~v~I~gig~~lP~~~v~n~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~La~~A~~~aL~~a-g   79 (378)
T PRK06816          1 MNVYITSTGAFLPGEPVSNDEMEAYLGLINGKPSRARRIILRNNGIKTRHYALDPEGRPTHSNAQMAAEAIRDLLDDA-G   79 (378)
T ss_pred             CCeEEEeeeecCCCCccCHHHHHHHHhhccCCcHHHHHHHHHhCCCceEEEEECCCCCCCCCHHHHHHHHHHHHHHHc-C
Confidence            57999999999999999999998876531       24565 899999998754     2578999999999999997 9


Q ss_pred             CCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407          69 IDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus        69 ~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ++++|||+||++|+++++..|+.+..|++.||++ ++++++++++|+|++.||.+|..+|++|..  +++|||++|++|.
T Consensus        80 i~~~dId~li~~s~~~~~~~p~~a~~v~~~Lgl~-~~~~~~v~~~Cas~~~al~~A~~~i~sg~~--~~vLvv~~E~~s~  156 (378)
T PRK06816         80 FSLGDIELLACGTSQPDQLMPGHASMVHGELGAP-PIEVVSSAGVCAAGMMALKYAYLSVKAGES--RNAVATASELASR  156 (378)
T ss_pred             CCHHHCCEEEEEECCCCcCChHHHHHHHhhCCCC-CCceeeecCcCHHHHHHHHHHHHHHHCCCC--CEEEEEeEccchh
Confidence            9999999999999999888899999999999995 688999999999999999999999999966  9999999999998


Q ss_pred             cccCcccc----------c--cc--ccccccccccceeEEEEecCCC---Ce-eEEeecccccccccccc----------
Q psy2407         149 FVTEDKNE----------L--TM--EWAFFEPSGGAGAVAMLISDKP---EI-FQFDIGSNGYYSFEVMD----------  200 (245)
Q Consensus       149 ~~~~~~~~----------~--~~--~~~~~~~~~GDGAaA~ll~~~~---~i-~~~~~~~~g~~~~~~~~----------  200 (245)
                      .+++.+.+          +  ..  ...+...+|||||+|+||++.+   ++ +.+.+..++++......          
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fGDGA~A~vl~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~g~~~~~  236 (378)
T PRK06816        157 WFRASRFEAEEEKLAELEENPEIAFEKDFLRWMLSDGAGAVLLENKPRPDGLSLRIDWIDLRSYAGELPVCMYAGAEKNE  236 (378)
T ss_pred             hhhhhhhhhHHHHhhcCcccCCCCCCCCCCCEeeecccEEEEEEecCCCCCceEEEEEEeeecccccCccceecCCccCC
Confidence            88753210          0  00  0011234799999999998743   32 44444444444322111          


Q ss_pred             -----ccCCCCCC---------CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         201 -----TCRPIPDS---------EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       201 -----~~~p~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                           .|++....         -.++++...+.+.+.+.+++++++++.|++++++.
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~DId  293 (378)
T PRK06816        237 DGSLKGWSDYPPEEAEAASALSLKQDVRLLNENIVVYTIKPLLELVDKRNLDPDDID  293 (378)
T ss_pred             CCCccCcccCCHHHHHhccCchHHhHHHHHHHHhHHHHHHHHHHHHHHcCCChhhCC
Confidence                 22221100         01455566666677779999999999999988653

>PLN03169 chalcone synthase family protein; Provisional

Probab=100.00  E-value=1.4e-32  Score=248.86  Aligned_cols=233  Identities=17%  Similarity=0.100  Sum_probs=174.5

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHc----CCChHH-------Hh-hccceeeeecCC-----------------------
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYR----KLDTVR-------FE-NLLMQQKSVSLP-----------------------   47 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~~~-------~~-~~Gi~~r~~~~~-----------------------   47 (245)
                      .+.|.++|+++|++.++|+++.+.+    +.+..+       +. ++||++||++.+                       
T Consensus        21 ~~~I~gigt~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~  100 (391)
T PLN03169         21 KATILALGKAFPSQLVPQEYLVDGYFRDTKCDDPALKEKLERLCKTTTVKTRYVVMSKEILDKYPELATEGTPTIKQRLD  100 (391)
T ss_pred             CeEEEEEEeeCCCeecCHHHHHHHHHHHhcccCHHHHHHHHHHHHhCCcceeeEeccccchhhCccccccCCCCHHHHHH
Confidence            4789999999999999999998752    222222       22 589999999753                       


Q ss_pred             --CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407          48 --YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        48 --~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A  124 (245)
                        ++++.+|+++|+++||+++ |++++|||+||++|++ ++..|+.+.+|+++||+++.+ .++|++.||+|+++||.+|
T Consensus       101 ~~~e~~~~La~~Aa~~aL~~a-g~~~~dId~lI~~t~t-~~~~P~~a~~l~~~LGl~~~~~~~~d~~~gC~g~~~aL~~A  178 (391)
T PLN03169        101 IANEAVTQMAVEASLACIKEW-GRPVSDITHLVYVSSS-EARLPGGDLYLAKQLGLSPDVQRVMLYFLGCSGGVAGLRVA  178 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh-CCCHHHCCEEEEECcC-CCCCCcHHHHHHHHhCcCCcceeeecccChhHHHHHHHHHH
Confidence              4568999999999999997 9999999999999885 788999999999999997655 4799999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCCe----eEEeecccccccccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI----FQFDIGSNGYYSFEVMD  200 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~i----~~~~~~~~g~~~~~~~~  200 (245)
                      ..+++++..  ++||||++|.++..+++.+..+... .....+|||||+|+||++.+.-    ..+.+.++++.  .+++
T Consensus       179 ~~~~~~~~~--~~vLvv~~e~~s~~~~~~~~~~~~d-~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~l~~~~~~--~ip~  253 (391)
T PLN03169        179 KDIAENNPG--SRVLLTTSETTILGFRPPSPDRPYD-LVGAALFGDGAAAVIIGADPIPVSESPFFELHTAIQQ--FLPG  253 (391)
T ss_pred             HHHHHhCCC--CeEEEEEEEcChhhccCCCccchhh-hhhhhhccCceEEEEEecCCCcccCCcceEEEeeeee--EcCC
Confidence            999999955  9999999999987665321100000 1125689999999999875321    11233333321  1111


Q ss_pred             c-----cCCCC-CCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407         201 T-----CRPIP-DSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVY  242 (245)
Q Consensus       201 ~-----~~p~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (245)
                      .     |+-.. +...+.|+..++...+.+.+.+++++++.|+++.++
T Consensus       254 ~~~~~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~~L~~~gl~~~di  301 (391)
T PLN03169        254 TEKTIDGRLTEEGINFKLGRELPQKIEDNIEGFCKKLMKKAGLVEKDY  301 (391)
T ss_pred             CccccCceecCCceEEEECcHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            0     11000 012366788888889999999999999999986544

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs

Probab=100.00  E-value=1.5e-32  Score=246.61  Aligned_cols=233  Identities=16%  Similarity=0.179  Sum_probs=178.9

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCC--Ch----------HHHh-hccceeeeecCC--CC------------------
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKL--DT----------VRFE-NLLMQQKSVSLP--YE------------------   49 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~--~~----------~~~~-~~Gi~~r~~~~~--~e------------------   49 (245)
                      .++|.++++|+|+++++|+++.+.++.  +.          +++. ++||++||++.+  ++                  
T Consensus         1 ~~~I~~~~~~~P~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~gI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (361)
T cd00831           1 AATILAIGTAVPPHRVPQSELVDFYRRLFSSDHLPELKEKLKRLCAKTGIETRYLVLPGGEETYAPRPEMSPSLDERNDI   80 (361)
T ss_pred             CcEEEEEEEeCCCCcCCHHHhhHHHHhcCChhhhHHHHHHHHHHHhhcceeEEEEEecCchhhcCCccccCCCcCcchhh
Confidence            368999999999999999999987642  22          4454 799999999875  33                  


Q ss_pred             ---CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHH
Q psy2407          50 ---DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        50 ---~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~  125 (245)
                         ++.+|+.+|+++||+++ |++++|||+||++|+++ +..|+.+..|+++||+++++++||++ ++|+|++.||++|.
T Consensus        81 ~~~~~~~la~~Aa~~aL~~a-~~~~~~Id~li~~s~~~-~~~P~~a~~i~~~lgl~~~~~~~dv~~~~C~~~~~al~~A~  158 (361)
T cd00831          81 ALEEARELAEEAARGALDEA-GLRPSDIDHLVVNTSTG-NPTPSLDAMLINRLGLRPDVKRYNLGGMGCSAGAIALDLAK  158 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHh-CCCHHHCCEEEEECCCC-CCCCCHHHHHHHHhCCCcccchhccccccchhHHHHHHHHH
Confidence               58999999999999997 99999999999999887 78999999999999997679999998 89999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCCe---eEEeeccccccccccccc-
Q psy2407         126 NFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI---FQFDIGSNGYYSFEVMDT-  201 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~i---~~~~~~~~g~~~~~~~~~-  201 (245)
                      .++++|..  ++||||++|.+|..+++++. +..  .+...+|||||+|+||++.+..   ....+..++.+...+++. 
T Consensus       159 ~~~~~~~~--~~aLvv~~e~~s~~~~~~d~-~~~--~~~~~lfGDgaaA~ll~~~~~~~~~~~~~~~~~~~~~~~~p~~~  233 (361)
T cd00831         159 DLLEANPG--ARVLVVSTELCSLWYRGPDH-RSM--LVGNALFGDGAAAVLLSNDPRDRRRERPLFELVRAASTLLPDSE  233 (361)
T ss_pred             HHHHHCCC--CEEEEEEeecccceeCCCCc-HHH--hhhhhhccCCceEEEEEcCCCcccccccceeeecccceeeecCC
Confidence            99999955  99999999999987766540 111  1124689999999999986521   112222333333222211 


Q ss_pred             ----cCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHh--cchhhhh
Q psy2407         202 ----CRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRV--QYKIIVY  242 (245)
Q Consensus       202 ----~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  242 (245)
                          |++... ...+.++..+..+.+.+.+++++++++.  |+++.++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~i~~~L~~~~~g~~~~di  281 (361)
T cd00831         234 DAMGWHLGEEGLTFVLSRDVPRLVEKNLERVLRKLLARLGIGLFKLAF  281 (361)
T ss_pred             CceEEEEEcceEEEEeChhHHHHHHHHHHHHHHHHhccccCCCccccc
Confidence                221111 1123445667777899999999999999  9887654

PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.

>PLN03171 chalcone synthase-like protein; Provisional

Probab=100.00  E-value=6.9e-32  Score=244.86  Aligned_cols=173  Identities=17%  Similarity=0.231  Sum_probs=144.6

Q ss_pred             eEEeEEeEecCCceecHHHHHHHc-C--CCh---------HHHh-hccceeeeecCCC----------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYR-K--LDT---------VRFE-NLLMQQKSVSLPY----------------------   48 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~-~--~~~---------~~~~-~~Gi~~r~~~~~~----------------------   48 (245)
                      +.|.|+|+|+|+++++|+++.+.+ .  .++         +||. ++||++||++.++                      
T Consensus        23 ~~I~gigt~~P~~~v~n~~~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~~~r~~  102 (399)
T PLN03171         23 AAVLAIGTANPANCVPQDEFPDFYFRATKSDHLTALKDKFKRICQELGVQKRYLHHTEELLSAHPEFLDHDAPSLDARLD  102 (399)
T ss_pred             cEEEEEEeeCCCcccCHHHHHHHHHHHhcccccHHHHHHHHHHHHhcCCCceeEeccccccccCccccccCCCCHHHHHH
Confidence            689999999999999999998863 1  111         2455 8999999998765                      


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407          49 ---EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        49 ---e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A  124 (245)
                         +++.+|+++|+++||+++ |++++|||+||++|+++++ .|+++.+++++||+++.+ .++++.+||+|+++||++|
T Consensus       103 ~~~~~a~~la~~Aa~~aL~~a-g~~~~dId~li~~t~t~~~-~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A  180 (399)
T PLN03171        103 IAADAVPELAAEAAKKAIAEW-GRPAADITHLVVTTNSGAH-IPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGAAALRLA  180 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEcCCCCC-CCchHHHHHHHhCCCcccceeeccCCccHHHHHHHHHH
Confidence               379999999999999997 9999999999999999975 899999999999996543 2577778999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~  181 (245)
                      ..+++++.+  ++||||++|.+|..+++.+.++ ....+...+|||||+|+||++.+
T Consensus       181 ~~li~~~~~--~~vLVv~~e~~s~~~~~~d~~~-~~~~v~~~LFGDGAaA~vl~~~~  234 (399)
T PLN03171        181 KDLAENNRG--ARVLVVAAEITLLLFNGPDEGC-FQTLLNQGLFGDGAAAVIVGADA  234 (399)
T ss_pred             HHHHHhCCC--CeEEEEEEeccccccCCCCccc-HHhhhccccccCccEEEEEecCC
Confidence            999999955  9999999999999987766211 11112246899999999999753

>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=99.97  E-value=2.1e-30  Score=233.73  Aligned_cols=228  Identities=18%  Similarity=0.099  Sum_probs=180.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcC------------------------CChHHHh-hccceeeeecCCC--------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRK------------------------LDTVRFE-NLLMQQKSVSLPY--------   48 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~------------------------~~~~~~~-~~Gi~~r~~~~~~--------   48 (245)
                      ++++|.++|+|+|+++++|+|+.+.++                        .+.+++. ++||++||++.++        
T Consensus         1 ~~~~I~~~g~~lP~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~   80 (372)
T PRK07515          1 HNVVISGTGLYTPPESISNEELVASFNAYVERFNAENAAAIAAGEVEALQPSSSEFIEKASGIKSRYVMDKEGILDPDRM   80 (372)
T ss_pred             CCcEEEEEEeecCCccccHHHHHHHHhhhhhhhcccchhhhccccccccCCCCHHHhhhccCCceEEEecccccCccccc
Confidence            468999999999999999999987631                        1356676 8899999987531        


Q ss_pred             ----------C--CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407          49 ----------E--DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYS  116 (245)
Q Consensus        49 ----------e--~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~  116 (245)
                                +  +..+|+.+|+++||+++ |++++|||.||++++++++..|+.+..+++.||++  .++++++.+|+|
T Consensus        81 ~~~~~~r~~~~~~~~~~la~~Aa~~aL~~a-gl~~~~Id~li~~~~~~~~~~p~~a~~v~~~Lgl~--~~~~~v~~aCas  157 (372)
T PRK07515         81 RPRIPERSNDELSIQAEMGVAAARQALARA-GRTAEDIDAVIVACSNMQRAYPAMAIEIQQALGIE--GFAFDMNVACSS  157 (372)
T ss_pred             CcccccccccchhhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCCCCCCCcHHHHHHHHhcCCC--CcEEEecchhHH
Confidence                      1  34689999999999997 99999999999999888888999999999999994  578999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC--------CeeEEee
Q psy2407         117 CTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--------EIFQFDI  188 (245)
Q Consensus       117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--------~i~~~~~  188 (245)
                      ++.||.+|..+|++|.+  ++|||+++|.++..+++.+  +.     ...+|||||+|+||++.+        .++...+
T Consensus       158 g~~al~~A~~~i~~g~~--~~vLvv~~e~~s~~~~~~d--~~-----~~~lfGDgAaA~vL~~~~~~~~~~~~~il~~~~  228 (372)
T PRK07515        158 ATFGIQTAANAIRSGSA--RRVLVVNPEICSGHLNFRD--RD-----SHFIFGDVATAVIVERADTATSAGGFEILGTRL  228 (372)
T ss_pred             HHHHHHHHHHHHHcCCC--CEEEEEeeecccccccccC--CC-----CCEEecCccEEEEEeeccccccCCCceEEEEEe
Confidence            99999999999999966  9999999999998776655  21     146799999999998742        3555554


Q ss_pred             ccccccccccc---cc---cCCCC-CC----CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         189 GSNGYYSFEVM---DT---CRPIP-DS----EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       189 ~~~g~~~~~~~---~~---~~p~~-~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .++++  +.+.   ++   +.+.. ..    ..|+|...++.+++.+.+++++++++.|+++.++.
T Consensus       229 ~~~~~--~~~~~~~G~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~~L~~~gl~~~dId  292 (372)
T PRK07515        229 FTQFS--NNIRNNFGFLNRADPEGIGARDKLFVQEGRKVFKEVCPMVAEHIVEHLAENGLTPADVK  292 (372)
T ss_pred             ecccc--cceecCCCCCCCCCccccccccceEEeccHHHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence            44222  2111   11   11111 11    13688877888899999999999999999987653

>cd00827 init_cond_enzymes "initiating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type III and polyketide synthases, type III, which include chalcone synthase and related enzymes

Probab=99.97  E-value=7.3e-30  Score=225.42  Aligned_cols=222  Identities=35%  Similarity=0.451  Sum_probs=181.1

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      .++|.++++|+|+++++++++.+.++.+  ++. ++|+++|++..++++..+|+.+|+++||+++ |++++|||.||+++
T Consensus         1 ~v~I~~i~~~lP~~~v~~~~~~~~~~~~--~~~~~~gi~~r~~~~~~~~~~~l~~~a~~~aL~~a-g~~~~~Id~li~~~   77 (324)
T cd00827           1 DVGIEAIGAYLPRYRVDNEELAEGLGVD--PGKYTTGIGQRHMAGDDEDVPTMAVEAARRALERA-GIDPDDIGLLIVAT   77 (324)
T ss_pred             CccEEEEEecCCceeecHHHHHHHhCCC--cceeeeecceeEecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEc
Confidence            3789999999999999999999988765  555 7899999998888999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      ++++...|+.+.++++.||++ ++++++++++|+|++.||.+|..+|++|.+  +++||+++|.++...+...     . 
T Consensus        78 ~~~~~~~~~~~~~i~~~lg~~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlvv~~e~~~~~~~~~~-----~-  148 (324)
T cd00827          78 ESPIDKGKSAATYLAELLGLT-NAEAFDLKQACYGGTAALQLAANLVESGPW--RYALVVASDIASYLLDEGS-----A-  148 (324)
T ss_pred             CCCCCCCccHHHHHHHHcCCC-CCceeehhhhhHHHHHHHHHHHHHHHcCCC--CEEEEEEEHHhhhcccCCC-----C-
Confidence            888777889999999999995 899999999999999999999999999966  9999999999988764211     1 


Q ss_pred             ccccccccceeEEEEecCCC-----CeeEEeecccccccc---ccccccCCCC--C--C--Ccccc--hhhHHHHHHHHH
Q psy2407         162 AFFEPSGGAGAVAMLISDKP-----EIFQFDIGSNGYYSF---EVMDTCRPIP--D--S--EAGNA--DLSLLSYLDCCA  225 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~~-----~i~~~~~~~~g~~~~---~~~~~~~p~~--~--~--~~~~g--~~~~~~~~~~~~  225 (245)
                        ...+|||||+|+||++++     +++.....+++.+.+   ...++..+.+  .  .  ..+++  +.....+.+.+.
T Consensus       149 --~~~~~gdgaaA~ll~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (324)
T cd00827         149 --LEPTLGDGAAAMLVSRNPGILAAGIVSTHSTSDPGYDFSPYPVMDGGYPKPCKLAYAIRLTAEPAGRAVFEAAHKLIA  226 (324)
T ss_pred             --ccccccCceEEEEEecCcccccCCceeeeeecccccccCccceeccCCCcchhhhhhcceeecCCccchHHHHhHHHH
Confidence              256899999999998754     577777777777543   1122211111  0  0  12444  355666788889


Q ss_pred             HHHHHHHHHhcch
Q psy2407         226 QSFKEYKKRVQYK  238 (245)
Q Consensus       226 ~~~~~~~~~~~~~  238 (245)
                      +++++.+++.+++
T Consensus       227 ~~~~~~l~~~~~~  239 (324)
T cd00827         227 KVVRKALDRAGLS  239 (324)
T ss_pred             HHHHHHHHHcccc
Confidence            9999999998876

They are characterized by the utlization of CoA substrate primers, as well as the nature of their active site residues.

>PF01154 HMG_CoA_synt_N: Hydroxymethylglutaryl-coenzyme A synthase N terminal; InterPro: IPR013528 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=99.97  E-value=1.4e-29  Score=201.61  Aligned_cols=167  Identities=47%  Similarity=0.699  Sum_probs=140.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++|+|.+|+.|+|..+++.+++++..|.+++|+. ..|++++++..++|++.+|++.|++++|++. ++++++|+.|+++
T Consensus         3 ~~VGI~~i~~y~p~~~v~~~~La~~~g~d~~K~~~glgq~~~av~~~~ED~vTmA~nAa~~ll~~~-~id~~~Ig~l~vg   81 (174)
T PF01154_consen    3 QNVGIDAIEFYIPRYYVDQEELAEARGVDPGKYTIGLGQEKMAVPPPDEDIVTMAANAAKPLLDRY-NIDPDDIGRLIVG   81 (174)
T ss_dssp             SSEEEEEEEEE-ESEEEEHHHHHHHTTS-TCHHHTTT--SEEEE--TTS-HHHHHHHHHHTTHHHH-T-HHHHEEEEEEE
T ss_pred             ccccEeEEEEecCceEecHHHHHHHhCCCHHHhhhhcCeeEEEeCCCcccHHHHHHHHHHHHHHHc-CCCHHHccEEEEe
Confidence            4799999999999999999999999999999998 7899999999999999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCC--CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELT  158 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~  158 (245)
                      |.+..+...+.+.+|++.||+  ++++..+|+.++|.|++.||+.|..+++++.++++++|||++|...+...  .    
T Consensus        82 TES~vD~sKs~~t~v~~ll~~s~~~~~~~~e~k~ACygGTaAL~~a~~~v~s~~~~g~~aLVVasDiA~y~~g--~----  155 (174)
T PF01154_consen   82 TESGVDKSKSISTYVHQLLGLSGNPDCRGVEMKQACYGGTAALQNAVNWVASSPWDGRKALVVASDIARYDLG--S----  155 (174)
T ss_dssp             -SS-SBSSS-HHHHHHHHTTTTT-SSSEEEEEESGGGHHHHHHHHHHHHHCSTTSTTEEEEEEEEEEE--STT--T----
T ss_pred             ccccccccccHHHHHHHHhCcCCCCceeeeehhhhhHHHHHHHHHHHHHHhcCCCCCCeEEEEeccccccCCC--C----
Confidence            999999999999999999999  45677899999999999999999999999866778999999999975421  1    


Q ss_pred             cccccccccccceeEEEEecCC
Q psy2407         159 MEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       159 ~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                           .+++.|.||+|+|++++
T Consensus       156 -----~e~TqGAGAVAmLi~~n  172 (174)
T PF01154_consen  156 -----AEPTQGAGAVAMLIGPN  172 (174)
T ss_dssp             -----TGGG-EEEEEEEEEECS
T ss_pred             -----ccccccceeEEEEecCC
Confidence                 25789999999999976

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the N-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1X9E_B 2HDB_B 2WYA_C 2P8U_A 3V4X_A 3V4N_C 3LEH_A 1TXT_D 1TVZ_A 2FA0_A ....

>PLN03172 chalcone synthase family protein; Provisional

Probab=99.96  E-value=2e-28  Score=221.60  Aligned_cols=227  Identities=16%  Similarity=0.190  Sum_probs=164.8

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcC-------CCh-H-HH----hhccceeeeecCCCC---------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRK-------LDT-V-RF----ENLLMQQKSVSLPYE---------------------   49 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~-------~~~-~-~~----~~~Gi~~r~~~~~~e---------------------   49 (245)
                      ..|.++|+.+|++.++++++.+++.       .+. + ++    .++||++||+..+++                     
T Consensus        17 ~~I~~igta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~   96 (393)
T PLN03172         17 ATILAIGKATPANCVSQADYPDYYFRITNSEHMTELKEKFKRMCDKSMIKKRYMHLTEEILKENPNMCAYMAPSLDARQD   96 (393)
T ss_pred             eEEEEEEecCCCccccHHHHHHHHHHHhcccCchHHHHHHHHHHHhcCCCceeEeccchhhhhCccccccCCCCHHHHHH
Confidence            5799999999999999999887542       111 1 12    268999999965210                     


Q ss_pred             ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-eeecCcchhHHHHHHHH
Q psy2407          50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-FELKQACYSCTAGLQMA  124 (245)
Q Consensus        50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-~dv~~~C~~~~~aL~~A  124 (245)
                          ...+|+++|+++||+++ |++++|||+||++|+|+. ..|+.+.+|+++||+++.+.+ ++++.||+|++.||++|
T Consensus        97 ~~~~~a~~La~~Aa~~aL~~a-g~~~~dId~ii~~t~t~~-~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A  174 (393)
T PLN03172         97 MVVVEVPKLGKEAAAKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKLLGLKPSVKRFMMYQQGCFAGGTVLRLA  174 (393)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-cCchHHHHHHHHhCCCCCceEEeeeCCchHHHHHHHHHH
Confidence                14589999999999997 999999999999999984 489999999999999766654 78899999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCCC---------eeEEe----ecc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKPE---------IFQFD----IGS  190 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~---------i~~~~----~~~  190 (245)
                      ..+++++..  ++||||++|.+|..+ ++.+  +.........+|||||+|+||++++.         ++...    ..+
T Consensus       175 ~~~~~~~~~--~~vLVV~~E~~S~~~~~~~d--~~~~~~v~~~LFGDGAaAvVl~~~~~~~~~~~~~~i~~~~~~~~~~t  250 (393)
T PLN03172        175 KDLAENNAG--SRVLVVCSEITAVTFRGPSD--THLDSLVGQALFGDGAAAVIIGADPDTKIERPLFEIVSAAQTILPDS  250 (393)
T ss_pred             HHHHHcCCC--CeEEEEEEehhhhhhccccc--ccHHhhhccchhcCceEEEEEecCCCCcccCceeEEeeeccEEecCC
Confidence            999999954  999999999999543 4444  21111123578999999999987431         22211    222


Q ss_pred             ccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407         191 NGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV  241 (245)
Q Consensus       191 ~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (245)
                      ++.+...+.+    .+....+. +.......+.+.+.+++++++.|+++.+
T Consensus       251 ~~~~~~~i~~----~G~~~~l~-~~vp~~~~~~i~~~~~~~L~~~gl~~~d  296 (393)
T PLN03172        251 DGAIDGHLRE----VGLTFHLL-KDVPGLISKNIEKSLVEAFAPIGINDWN  296 (393)
T ss_pred             cccccceEEc----CCcEEEEe-chHHHHHHHHHHHHHHHHhhhcCCCccc
Confidence            2322221111    10000112 5556666888899999999999987554

>PLN03168 chalcone synthase; Provisional

Probab=99.96  E-value=3.6e-28  Score=219.85  Aligned_cols=227  Identities=14%  Similarity=0.113  Sum_probs=162.2

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcC------CCh---HHHh----hccceeeeecCCCC---------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRK------LDT---VRFE----NLLMQQKSVSLPYE---------------------   49 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~------~~~---~~~~----~~Gi~~r~~~~~~e---------------------   49 (245)
                      ..|.++|+.+|++.++++++.+++.      ..+   +++.    ++||++||+..+++                     
T Consensus        16 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~ps~~~r~~   95 (389)
T PLN03168         16 ACVLGIGTAVPPAEFLQSEYPDFFFNITNCGEKEALKAKFKRICDKSGIRKRHMFLTEEVLKANPGICTYMEPSLNVRHD   95 (389)
T ss_pred             eEEEEEeccCCCcccCHHHHHHHHHHhccccCcHHHHHHHHHHHHhcCCCeeeeeccccchhhCcccccccCCCHHHHHH
Confidence            6799999999999999999887541      111   1222    68999999965221                     


Q ss_pred             ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407          50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A  124 (245)
                          .+.+|+++|+++||+++ |++++|||+||++|+|+ +..|+++.+|+++||+++.+ .++|++.||+||++||.+|
T Consensus        96 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~lI~~T~Tg-~~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~g~~~aL~~A  173 (389)
T PLN03168         96 IVVVQVPKLAAEAAQKAIKEW-GGRKSDITHIVFATTSG-VNMPGADHALAKLLGLKPTVKRVMMYQTGCFGGASVLRVA  173 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCCC-CCCccHHHHHHHHhCcCCcceeeeeeCCccHHHHHHHHHH
Confidence                36799999999999997 99999999999999999 56899999999999997554 3899999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC------CeeEEeecccccccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP------EIFQFDIGSNGYYSFEV  198 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~~~g~~~~~~  198 (245)
                      ..+++++..  ++||||++|.+|..++..+.. .........+|||||+|+||++++      +++.+....  ++  .+
T Consensus       174 ~~~i~~~~~--~~VLVV~~E~~S~~~~~~~~~-~~~~~~~~~LFGDGAaAvvl~~~~~~~~~~~~~~~~~~~--~~--~~  246 (389)
T PLN03168        174 KDLAENNKG--ARVLAVASEVTAVTYRAPSEN-HLDGLVGSALFGDGAGVYVVGSDPKPEVEKALFEVHWAG--ET--IL  246 (389)
T ss_pred             HHHHHhCCC--CEEEEEEEehhhhhccCcccc-cHHHHhccccccCccEEEEEecCCCCccCCcceEEEeee--eE--EE
Confidence            999999955  999999999999876432110 011112357899999999998743      233333221  10  11


Q ss_pred             cc-----ccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         199 MD-----TCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       199 ~~-----~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                      ++     .|...... ..+--+.......+.+.+.++++++..|..+
T Consensus       247 p~s~~~~~~~~~~~g~~~~l~~~vp~~i~~~~~~~l~~~l~~~~~~~  293 (389)
T PLN03168        247 PESDGAIDGHLTEAGLIFHLMKDVPGLISKNIEKFLNEARKCVGSPD  293 (389)
T ss_pred             cCCCCccCceEecCceEEEECHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            10     11111111 0111123444556777888888888877653

>PLN03170 chalcone synthase; Provisional

Probab=99.96  E-value=3.3e-28  Score=220.79  Aligned_cols=230  Identities=17%  Similarity=0.188  Sum_probs=167.1

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcC-------CCh-H-HHh----hccceeeeecCCCC---------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRK-------LDT-V-RFE----NLLMQQKSVSLPYE---------------------   49 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~-------~~~-~-~~~----~~Gi~~r~~~~~~e---------------------   49 (245)
                      ..|.+||+.+|++.++++++.++..       .+. + ++.    ++||++||+..+++                     
T Consensus        21 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~  100 (401)
T PLN03170         21 ATVLAIGTATPANCVHQADYPDYYFRITKSEHMTELKEKFKRMCDKSQIRKRYMHLTEEYLAENPNMCAYMAPSLDARQD  100 (401)
T ss_pred             eEEEEEeecCCCccccHHHHHHHHHHHccccCchhHHHHHHHHHHhCCCCceeEeccccchhhCccccccCCCCHHHHHH
Confidence            6799999999999999999887541       221 1 122    68999999965211                     


Q ss_pred             ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ceeeecCcchhHHHHHHHH
Q psy2407          50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~~dv~~~C~~~~~aL~~A  124 (245)
                          ...+|+++|+++||+++ |++++|||+||++|+++. ..|+.+.+|+++||+++.+ .+++++.||+|++.||++|
T Consensus       101 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~lI~~T~Tg~-~~Ps~a~~l~~~LGl~~~~~r~~d~~~gC~G~~~aL~~A  178 (401)
T PLN03170        101 IVVVEVPKLGKAAAQKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKMLGLRPSVNRLMMYQQGCFAGGTVLRVA  178 (401)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-CCChHHHHHHHHhCcCcccHHHHhhcChhHHHHHHHHHH
Confidence                25679999999999997 999999999999999884 4899999999999997554 4799999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCCC--ee--EEeeccccccccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKPE--IF--QFDIGSNGYYSFEVM  199 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~--i~--~~~~~~~g~~~~~~~  199 (245)
                      ..+++++..  ++||||++|.+|..+ ++.+.....  .....+|||||+|+||++.++  +.  .+.+.++++..  ++
T Consensus       179 ~~l~~~~~~--~~vLVV~~E~~S~~~~~~~~~~~~~--~~~~~LFGDGAaAvVl~~~~~~~~~~~~~~l~~~~~~~--~p  252 (401)
T PLN03170        179 KDLAENNRG--ARVLVVCSEITAVTFRGPSESHLDS--MVGQALFGDGAAAVIVGADPDERVERPLFQLVSASQTI--LP  252 (401)
T ss_pred             HHHHHcCCC--CeEEEEEEehhhhccCCcccchhhh--hhhhhhhhceeEEEEEecCCcccccCCceEEeeccceE--ec
Confidence            999999954  999999999999887 343310111  123568999999999987542  11  12333333211  11


Q ss_pred             c---c--cCCC-CCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407         200 D---T--CRPI-PDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV  241 (245)
Q Consensus       200 ~---~--~~p~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (245)
                      +   .  |.-. .+....-.+.......+.+.+.+++++++.|+++.+
T Consensus       253 ~~~~~~~~~i~~~G~~~~l~~~vp~~~~~~i~~~v~~~L~~~gl~~~d  300 (401)
T PLN03170        253 DSEGAIDGHLREVGLTFHLLKDVPGLISKNIERSLEEAFKPLGITDYN  300 (401)
T ss_pred             CCcccccceEEcCCeEEEEehHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            1   0  1100 000011134556677889999999999999987654

>PF00195 Chal_sti_synt_N: Chalcone and stilbene synthases, N-terminal domain; InterPro: IPR001099 Synonym(s): Chalcone synthase, Flavonone synthase, 6'-deoxychalcone synthase Naringenin-chalcone synthases (2

Probab=99.96  E-value=1.1e-28  Score=205.72  Aligned_cols=173  Identities=21%  Similarity=0.308  Sum_probs=134.5

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHc----CCCh-----HHHh----hccceeeeecCCC---------------------
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYR----KLDT-----VRFE----NLLMQQKSVSLPY---------------------   48 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~-----~~~~----~~Gi~~r~~~~~~---------------------   48 (245)
                      ..+|.+||+.+|+++++++++.+.+    +.+.     +++.    ++||++||...+.                     
T Consensus        14 ~A~Il~IgTA~P~~~~~Q~~~~e~~~~~~~~~~~~~~~~~l~ri~~~sgI~~R~~vl~~~~~~~~p~~~~~~~ps~~~R~   93 (226)
T PF00195_consen   14 PAYILSIGTAVPPHRITQEEIAEFFFRITHSDDLPDLRRKLRRIFENSGIEKRHSVLPEEWLDEYPSFWDFADPSLAERN   93 (226)
T ss_dssp             SEEEEEEEEE-SSEEEEGCCHHHHHHHHTT-TTGHHHHHHHHHHHHHST-SEEEESS-HHHHHTSGGGHSSSSS-HHHHH
T ss_pred             CeEEEEEEEeCCCceecHHHHHHHHHHHhcccchhHHHHHHHhhhhccccceeccccchhhhhcCcchhhccCccHHHHH
Confidence            5789999999999999999987652    3222     2332    6899999997541                     


Q ss_pred             ----CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHH
Q psy2407          49 ----EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQM  123 (245)
Q Consensus        49 ----e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~  123 (245)
                          +...+|+.+|+++||+++ |++++||++||++|+|+ ...|++..+|.++|||++++..+.+. .||++++.+|..
T Consensus        94 ~~~~~~a~~L~~~Aa~~AL~~~-g~~~~dIthlv~vs~TG-~~~PglD~~l~~~LgL~~~v~R~~i~~~GC~gg~~~L~~  171 (226)
T PF00195_consen   94 ALYAEEAPPLAEEAARKALAEA-GLDPSDITHLVTVSCTG-IAAPGLDARLINRLGLRPDVQRTPIFGMGCAGGAAGLRR  171 (226)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-TS-GGGECEEEEEESSS-SECS-HHHHHHHHHT--TTSEEEEEES-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCCCcccceEEEEecCC-cCCCchhHHHHhcCCCCCCcEEEEEeccchhhHHHHHHH
Confidence                236789999999999998 99999999999999998 67899999999999999999888885 799999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecCCC
Q psy2407         124 AINFILSKVSPGAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~~~  181 (245)
                      |..+.+++  |+.+||||++|.+|..+.. .+.  .....++..+|||||+|+||+.+|
T Consensus       172 A~~~~~~~--p~a~VLvv~vElcsl~~~~~~~~--~~~~lv~~aLFgDGaAA~vv~~dP  226 (226)
T PF00195_consen  172 AKDIARAN--PGARVLVVCVELCSLHFQAPNDD--SLDNLVANALFGDGAAAVVVGADP  226 (226)
T ss_dssp             HHHHHHHS--TT-EEEEEEEEEGGGTHHHCCTT--SHHHHHHHHHB-EEEEEEEEESS-
T ss_pred             HHHHHhCC--ccceEEEEEEEeeEEEEecCCcc--cHHHHhHHhhhcCCceEEEEccCC
Confidence            99999999  6799999999999987753 231  112233467899999999998764

3.1.74 from EC) and stilbene synthases (STS) (formerly known as resveratrol synthases) are related plant enzymes. CHS is an important enzyme in flavanoid biosynthesis and STS is a key enzyme in stilbene-type phyloalexin biosynthesis. Both enzymes catalyse the addition of three molecules of malonyl-CoA to a starter CoA ester (a typical example is 4-coumaroyl-CoA), producing either a chalcone (with CHS) or stilbene (with STS) []. These enzymes have a conserved cysteine residue, located in the central section of the protein sequence, which is essential for the catalytic activity of both enzymes and probably represents the binding site for the 4-coumaryl-CoA group [].; GO: 0016746 transferase activity, transferring acyl groups, 0009058 biosynthetic process; PDB: 3EUO_B 3EUT_C 3EUQ_D 3E1H_A 3AWK_A 3AWJ_A 2H84_A 3A5S_A 3A5Q_B 3A5R_A ....

>PLN03173 chalcone synthase; Provisional

Probab=99.96  E-value=1.3e-27  Score=216.03  Aligned_cols=227  Identities=19%  Similarity=0.234  Sum_probs=164.7

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcC------CCh--H-HH----hhccceeeeecCCCC---------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRK------LDT--V-RF----ENLLMQQKSVSLPYE---------------------   49 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~------~~~--~-~~----~~~Gi~~r~~~~~~e---------------------   49 (245)
                      ..|.++|+.+|++.++++++.+...      ..+  . ++    .++||++||+..+++                     
T Consensus        17 ~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~~~~~~~~~~~~~~~~~~p~~~~r~~   96 (391)
T PLN03173         17 ATIMAIGTSTPPNCVDQSTYPDYYFRITNSEHKVELKEKFKRMCEKSMIKKRYMHLTEEILKENPSVCEYMAPSLDARQD   96 (391)
T ss_pred             eEEEEEEccCCCcccCHHHHHHHHHHHhccccchhHHHHHHHHHHhCCCCeeeEeccchhhhhCcccccccCCCHHHHHH
Confidence            5799999999999999999886541      111  1 12    268999999865211                     


Q ss_pred             ----CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHHHHH
Q psy2407          50 ----DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGLQMA  124 (245)
Q Consensus        50 ----~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL~~A  124 (245)
                          .+.+|+++|+++||+++ |++++|||+||++|+|+. ..|+.+.+|+++||+++.+. +++++.||+|++.||++|
T Consensus        97 ~~~~~a~~La~~Aa~~AL~~a-g~~~~dId~li~~t~t~~-~~P~~a~~l~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A  174 (391)
T PLN03173         97 MVVVEVPKLGKEAAAKAIKEW-GQPKSKITHLVFCTTSGV-DMPGADYQLTKLLGLRSSVKRFMMYQQGCFAGGTVLRLA  174 (391)
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-cccHHHHHHHHHhCCCccceeeehhcCccHHHHHHHHHH
Confidence                14689999999999997 999999999999999984 47999999999999976553 578899999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc-cccCcccccccccccccccccceeEEEEecCCC--CeeE--Ee---------ecc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF-FVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQ--FD---------IGS  190 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~-~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~--~~---------~~~  190 (245)
                      ..+++++.  .++||||++|.+|. ..++++  +.........+|||||+|+||++++  ++..  +.         ..+
T Consensus       175 ~~~~~~~~--~~~vLVV~~E~~S~~~~~~~d--~~~~~~v~~~LFGDGAaAvvl~~~~~~~~~~~~~~l~~~~~~~~~~t  250 (391)
T PLN03173        175 KDLAENNK--GARVLVVCSEITAVTFRGPSD--THLDSLVGQALFGDGAAAIIIGSDPVLGVEKPLFELVSAAQTILPDS  250 (391)
T ss_pred             HHHHHhCC--CCeEEEEEEehhhhhhCCccc--cchhhhhhhhhhcCceEEEEEeCCCCCCcCCcceEEEeeeeEEecCC
Confidence            99999994  49999999999995 334444  2111112357899999999998743  1100  11         122


Q ss_pred             ccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhh
Q psy2407         191 NGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIV  241 (245)
Q Consensus       191 ~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (245)
                      ++.+...+    +..+....+. +...+...+.+.+.++++++++|+++.+
T Consensus       251 ~~~~~~~i----~~~G~~~~l~-~~vp~~~~~~~~~~i~~~L~~~gl~~~d  296 (391)
T PLN03173        251 DGAIDGHL----REVGLTFHLL-KDVPGLISKNVEKSLTEAFKPLGISDWN  296 (391)
T ss_pred             ccceeeEE----EcCceEEEEe-cHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence            23222111    1111000122 4556666889999999999999987654

>KOG1393|consensus

Probab=99.95  E-value=2.4e-27  Score=205.60  Aligned_cols=221  Identities=31%  Similarity=0.426  Sum_probs=198.4

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      +++|.++..|+|.+.|+++|++.+.|.+..++. +.|..+-.++.+.|+...|+..+.++++++. +++++.|+.|-++|
T Consensus        11 dvGI~aieiyfP~~yV~Q~elEk~d~vs~gKytIGLGq~~MgfcsdrEDi~Sl~ltvvs~Lmery-~i~~~~IGRLEVGT   89 (462)
T KOG1393|consen   11 DVGIIAIEIYFPSQYVDQEELEKFDGVSAGKYTIGLGQTQMGFCSDREDIISLSLTVVSRLMERY-NIDPDSIGRLEVGT   89 (462)
T ss_pred             ccceeEEEEEcCccccChhhHhhcCCccccceEeccCcceecccCchhhhhhhhHHHHHHHHHHh-CCChhhcceEEecc
Confidence            799999999999999999999999999999988 8899998999889999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcC--CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLG--LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LG--l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      .|-.+...++-..|++.++  -+.++..+|..++|.||..||..|.++|++..++++.+|||++|..-+.   +++    
T Consensus        90 ETiiDKSKSVKt~LMqLF~~sgNtdIEGiDttnACYGGtaALfnavnWiESssWDGr~aivV~gDIAvY~---~G~----  162 (462)
T KOG1393|consen   90 ETIIDKSKSVKTVLMQLFEESGNTDIEGIDTTNACYGGTAALFNAVNWIESSSWDGRYAIVVCGDIAVYA---KGN----  162 (462)
T ss_pred             eeccccchHHHHHHHHHhhhcCCCccccccccccccccHHHHHHHhhhhhhcccCCceeEEEEeeEEEec---CCC----
Confidence            9988889999999999998  5567889999999999999999999999998889999999999998654   221    


Q ss_pred             ccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHhc
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRVQ  236 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~  236 (245)
                          ++++-|.||+|+|++++..+ -++-+..+.|-.+.+|||+|...+  |.+||++|+.||+++++.+|..|.++..
T Consensus       163 ----aRpTGGAgAVAmLIgPnApi-~ferglr~thM~hayDFyKPdl~SEyPvVDGklSi~cYl~Ald~cY~~~~kK~~  236 (462)
T KOG1393|consen  163 ----ARPTGGAGAVAMLIGPNAPI-IFERGLRATHMQHAYDFYKPDLLSEYPVVDGKLSIQCYLSALDRCYTVYRKKIA  236 (462)
T ss_pred             ----CCCCCCcceEEEEEcCCCce-EecccchhhhhhhhhhccCCCCCCcCceecCeehHHHHHHHHHHHHHHHHHHHH
Confidence                35789999999999998654 355556688888899999998765  6899999999999999999999987765

>PLN02932 3-ketoacyl-CoA synthase

Probab=99.94  E-value=7.3e-26  Score=207.63  Aligned_cols=188  Identities=15%  Similarity=0.117  Sum_probs=151.3

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHc------C-CCh---------HHHh-hccceeeeecCCCC--------------
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYR------K-LDT---------VRFE-NLLMQQKSVSLPYE--------------   49 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~------~-~~~---------~~~~-~~Gi~~r~~~~~~e--------------   49 (245)
                      .++++..++|.|+.  +++.+.+.+..      | .++         +|+. ++||.+|++..+..              
T Consensus        67 ~vyl~d~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~i~~rsGig~~t~~p~~~~~~~~~~~~~~~~~  146 (478)
T PLN02932         67 PVYLVDFSCYLPPSHLKASIQTIMGHVRRVREAGAWKQESDYLMDFCEKILERSGLGQETYIPEGLQCLPLQQNLAVSRK  146 (478)
T ss_pred             cEEEEeeeeecCcccccccHHHHHHHHHhhcccCCCCccchhHHHHHHHHHHHcCCCCceeeccccccCCHHHHHHHHHH
Confidence            58999999999985  67777776543      1 211         2343 78999998875442              


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i  128 (245)
                      .+.+|+.+|+++||+++ |++|+|||+||++|+++. ..|+.+..|+++||+++++.+||++ +||+|++.+|.+|.+++
T Consensus       147 ea~~la~~Aa~~aL~~a-gi~p~dId~lIv~tst~~-~~Pslaa~V~~~lGlr~~i~~fdL~gmGCSggl~aL~lA~~ll  224 (478)
T PLN02932        147 ETEEVIIGAVDNLFRNT-GISPSDIGILVVNSSTFN-PTPSLSSILVNKFKLRDNIKSLNLGGMGCSAGVIAIDAAKSLL  224 (478)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEccCCC-CCCcHHHHHHHHhCCCCCceEEEeccchhhhHHHHHHHHHHHH
Confidence            37899999999999997 999999999999999985 8999999999999997789999998 89999999999999999


Q ss_pred             hcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC--------Cee---EEeeccccccccc
Q psy2407         129 LSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--------EIF---QFDIGSNGYYSFE  197 (245)
Q Consensus       129 ~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--------~i~---~~~~~~~g~~~~~  197 (245)
                      +++..  ++||||++|.+|..+++.+. |.+.  ....+|||||+|+||+..+        +++   ..+.++|+..++.
T Consensus       225 ~~~~~--~~aLVVstE~~S~~~~~~d~-r~~l--~t~~LFgDGAAAvlLs~~~~~~~~~~~~L~~~v~t~~~ad~~~~~~  299 (478)
T PLN02932        225 QVHRN--TYALVVSTENITQNLYLGNN-KSML--VTNCLFRIGGAAILLSNRSRDRKRAKYELVHTVRVHTGADDRSYEC  299 (478)
T ss_pred             HcCCC--CeEEEEEEeecccccCCCcc-hhhh--ccceeecccceEEEEecccccccCcceEEEeeeeeeeccCCCcccc
Confidence            99954  99999999999999987652 2221  1367899999999999643        244   4455566655443

>PLN02377 3-ketoacyl-CoA synthase

Probab=99.92  E-value=3.1e-24  Score=198.02  Aligned_cols=188  Identities=16%  Similarity=0.152  Sum_probs=148.6

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH------h-hccceeeeecC-------CC-------CCHHHHH
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF------E-NLLMQQKSVSL-------PY-------EDPVSFA   55 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~------~-~~Gi~~r~~~~-------~~-------e~~~~la   55 (245)
                      .++++..++|.|+.  +++.+.+.+..   | .+++.+      . ++|+.+..+.+       ++       +.+.+++
T Consensus        97 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ri~~~sgig~~t~~p~~~~~~~~~~~~~~~~~ea~~l~  176 (502)
T PLN02377         97 PVYLVDYSCYRAPDHLKAPFARFMEHSRLTGDFDDSSLEFQRKILERSGLGEDTYVPEAMHYIPPRPSMAAAREEAEQVM  176 (502)
T ss_pred             CEEEEeeeeecCCccccccHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCCccccCchhccCCccchHHHHHHHHHHHH
Confidence            48999999999985  67788777653   2 344332      2 67886633322       11       3478999


Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP  134 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~  134 (245)
                      ..|+++||+++ |++|+|||+||+ ++|+++..|+.+..|+++||+++++.+||++ +||+||+.+|++|.++++++.. 
T Consensus       177 ~~A~~~aL~ka-Gi~p~dID~LVv-~cS~~~~~PSlaa~V~~~LGlr~~v~afdL~gmGCsggl~aL~lA~~ll~~~~~-  253 (502)
T PLN02377        177 FGALDNLFANT-NVNPKDIGILVV-NCSLFNPTPSLSAMIVNKYKLRGNIRSFNLGGMGCSAGVIAVDLAKDMLQVHRN-  253 (502)
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEE-ECCCCCCCCcHHHHHHHHhCCCCCCeEEecccchhhHHHHHHHHHHHHHHcCCC-
Confidence            99999999997 999999999987 7889888999999999999997789999998 7999999999999999999954 


Q ss_pred             CCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC-----------CeeEEeeccccccccc
Q psy2407         135 GAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP-----------EIFQFDIGSNGYYSFE  197 (245)
Q Consensus       135 ~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~-----------~i~~~~~~~~g~~~~~  197 (245)
                       ++||||++|..|..+++.++ +..  .++..+|||||+|+||++.+           +++..+..++++..+.
T Consensus       254 -~~aLVVstE~~S~~~~~~d~-~s~--lv~n~LFgDGAaAvlLs~~~~~~~~a~~~l~~iv~t~~~~d~~~~~~  323 (502)
T PLN02377        254 -TYAVVVSTENITQNWYFGNK-KSM--LIPNCLFRVGGSAVLLSNKSRDKRRSKYKLVHVVRTHRGADDKAFRC  323 (502)
T ss_pred             -CEEEEEEEeccccccCCCCC-ccc--cccceeeccccEEEEEecccccccccccccceEEEEEEEEcCCccce
Confidence             99999999999998877662 221  12357899999999998621           2466666677765543

>COG3424 BcsA Predicted naringenin-chalcone synthase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=99.91  E-value=2.4e-23  Score=176.87  Aligned_cols=171  Identities=19%  Similarity=0.248  Sum_probs=142.1

Q ss_pred             eEEeEEeEecCCceecHHHHHHHc----CC-ChHHH----h-hccceeeeecCCC-----------------CCHHHHHH
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYR----KL-DTVRF----E-NLLMQQKSVSLPY-----------------EDPVSFAI   56 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~----~~-~~~~~----~-~~Gi~~r~~~~~~-----------------e~~~~la~   56 (245)
                      ..|.++++++|++++.+.|+...+    .. ..+.|    . +.+|++|+...|.                 |.+.+|.+
T Consensus         2 a~i~sv~t~~Ppy~~~Qse~~d~f~~~~~~~~~~~I~r~l~~~~~i~~R~~v~Pl~~y~e~~~f~ekN~ifie~a~~l~v   81 (356)
T COG3424           2 AVIASVATALPPYRYNQSEITDSFAELPFQEGREDIPRVLHANAQINRRHLVLPLDWYREPHGFGEKNEIFIEEAVPLGV   81 (356)
T ss_pred             ceeeecccCCCccccchHHHHHHHHHhccccchHHHHHHHhhccccccceecccHhhccCCCChhhhhhhHHHHHHHHHH
Confidence            469999999999999997776543    11 23333    2 4578888887653                 24788999


Q ss_pred             HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCCC
Q psy2407          57 NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSPG  135 (245)
Q Consensus        57 ~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~~  135 (245)
                      +|.++||+.. ++.++|||+|+++|+|+ ...|++..+|.++|||++++..+.+. .||++++.+|..|+.+++++  |.
T Consensus        82 ~a~r~aL~~~-~l~pedId~vv~vtsTG-~~~Ps~dari~~~Lgl~p~~~Rvpv~glGCaaga~glara~~y~ra~--P~  157 (356)
T COG3424          82 DALRRALDGS-PLRPEDIDAVVTVTSTG-LATPSLDARIVGELGLSPDTRRVPVWGLGCAAGAAGLARARDYCRAA--PD  157 (356)
T ss_pred             HHHHHHhccC-CCCHHHCcEEEEEeecc-ccCCChhHHHHhhcCCCCccceeeeecchhhhhhhHHHHHHHHHhhC--cc
Confidence            9999999996 99999999999999998 67899999999999999999888884 79999999999999999999  66


Q ss_pred             CeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC
Q psy2407         136 AKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       136 ~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      .+|||||.|.+|-.+...++  .....++..+||||++|++++.+
T Consensus       158 ~~vlvV~vELCSLt~~~~d~--t~s~lVgtaLF~DG~AA~vv~gd  200 (356)
T COG3424         158 ANVLVVCVELCSLTYVFADD--TKSNLVGTALFGDGAAAVVVSGD  200 (356)
T ss_pred             ceEEEEEeeeeeeeeecCCC--CcccceeeeeecCCeeEEEEecc
Confidence            99999999999988766552  22223467899999999999864

>PLN02854 3-ketoacyl-CoA synthase

Probab=99.90  E-value=1.1e-22  Score=187.89  Aligned_cols=188  Identities=15%  Similarity=0.140  Sum_probs=143.7

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH-------hhccceeeeecCCC--------------CCHHHHH
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF-------ENLLMQQKSVSLPY--------------EDPVSFA   55 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~-------~~~Gi~~r~~~~~~--------------e~~~~la   55 (245)
                      .++++..++|-|+.  +++.+.+.+..   | .+++.+       +++|+.+..+..+.              +.+....
T Consensus       113 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sg~g~~ty~P~~~~~~~~~~~~~~~r~ea~~v~  192 (521)
T PLN02854        113 PVYLVDFACYKPEDERKISVDSFLTMTEENGSFEDETVQFQRRISTRSGLGDETYLPRGITSRPPNLCMEEARAEAEAVM  192 (521)
T ss_pred             cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCccccCccccCCCCcchHHHHHHHHHHHH
Confidence            58999999999985  67777777543   2 344432       26787765443321              1245667


Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP  134 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~  134 (245)
                      ..|+++||+++ |++|+|||+||++ +++++..|+++.+|+++||+++++.+||++ .||+||+.+|.+|+++++++.. 
T Consensus       193 ~~~~~~lL~ka-Gi~p~dID~LIv~-cS~~~p~PSlAa~I~n~LGlr~~i~afdLsgmGCSggl~aL~lA~~lL~~~~~-  269 (521)
T PLN02854        193 FGALDSLFSKT-GVKPRDIGILIVN-CSLFNPTPSLSAMIVNHYKLRTDIKSYNLGGMGCSAGLISIDLANDLLKANPN-  269 (521)
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEEE-CCCCCCCCCHHHHHHHHhCCCCCceEEecccchhhhHHHHHHHHHHHHHhCCC-
Confidence            77889999997 9999999999985 778888999999999999997789999998 8999999999999999999954 


Q ss_pred             CCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecCCC---C--------eeEEeecccccccccc
Q psy2407         135 GAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISDKP---E--------IFQFDIGSNGYYSFEV  198 (245)
Q Consensus       135 ~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~~~---~--------i~~~~~~~~g~~~~~~  198 (245)
                       ++||||++|.+|  .++ .+++|.+-  ....+|||||+|+||++.+   +        ++..++++|++..+.+
T Consensus       270 -~~aLVVstE~~S--~~~y~g~Drs~l--v~~~LFgDGAAAvlLs~~~~~~~~~k~~L~~~v~t~~~ad~~~~~~i  340 (521)
T PLN02854        270 -SYAVVVSTENIT--LNWYFGNDRSML--LCNCIFRMGGAAVLLSNKARDRKRSKYQLVHTVRTHKGADDKNYNCV  340 (521)
T ss_pred             -CeEEEEEEeeee--cCCCCCCchhhh--cceeeeccceeEEEEecccccccccchheeeEEEEEEeeCCCccCeE
Confidence             999999999998  444 11113321  2357899999999998732   2        5667777777765543

>PLN02192 3-ketoacyl-CoA synthase

Probab=99.90  E-value=9.9e-23  Score=187.81  Aligned_cols=169  Identities=14%  Similarity=0.112  Sum_probs=134.3

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHHH-------hhccceeeeecCC-------C-------CCHHHHH
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVRF-------ENLLMQQKSVSLP-------Y-------EDPVSFA   55 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~~-------~~~Gi~~r~~~~~-------~-------e~~~~la   55 (245)
                      .++++..++|.|+.  +++.+.+.+..   | .+++.+       +++|+.+..+..+       +       +....+.
T Consensus       101 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~sglg~~t~~p~~~~~~~~~~~~~~~~~Ea~~~~  180 (511)
T PLN02192        101 PVYLVDFSCYKPDDSRKCTRKIFMDRSKLTGSFTEENLEFQRKILERSGLGESTYLPEAVLNVPPNPCMAEARKEAETVM  180 (511)
T ss_pred             cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHhcCCCCcccCChhhccCCCCccHHHHHHHHHHHH
Confidence            58999999999996  67788777653   2 344432       2678776544332       1       2367899


Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhcCCCC
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILSKVSP  134 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~sg~~~  134 (245)
                      ..|+++||+++ |++|+|||.||++ +++++..|+.+..|+++||+++++.+||++ +||+||+.||.+|.++++++.. 
T Consensus       181 ~~Aa~~aL~ka-Gi~p~DIDiLIv~-~S~~~~~PSlaa~I~n~lGlr~~i~afdLsgmGCSggl~aLdlA~~lL~a~~~-  257 (511)
T PLN02192        181 FGAIDQLLAKT-SVKPKDIGILIVN-CSLFNPTPSLSAMVINHYKLRGNILSYNLGGMGCSAGLISIDLAKHLLQVHPN-  257 (511)
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEEE-CCCCCCCchHHHHHHHHhCCCCCceEEEcccchhhhHHHHHHHHHHHHHcCCC-
Confidence            99999999997 9999999999987 557788999999999999997689999998 7999999999999999999954 


Q ss_pred             CCeEEEEEeccccccccC-cccccccccccccccccceeEEEEecC
Q psy2407         135 GAKALVIATDISRFFVTE-DKNELTMEWAFFEPSGGAGAVAMLISD  179 (245)
Q Consensus       135 ~~~aLVv~~e~~s~~~~~-~~~~~~~~~~~~~~~~GDGAaA~ll~~  179 (245)
                       ++||||++|.+|..+.. ++  |.+.  ....+|||||+|+||++
T Consensus       258 -~~aLVVstE~~S~n~y~g~d--rs~l--v~n~LFgDGAaAvLLs~  298 (511)
T PLN02192        258 -SYALVISMENITLNWYFGND--RSML--VSNCLFRMGGAAILLSN  298 (511)
T ss_pred             -CeEEEEEEEeccccCCCCCC--HHHH--hccccccccceEEEEec
Confidence             99999999999933321 23  4332  13578999999999987

>PLN00415 3-ketoacyl-CoA synthase

Probab=99.90  E-value=6.1e-23  Score=186.66  Aligned_cols=170  Identities=14%  Similarity=0.168  Sum_probs=130.8

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHc---C-CChHH------Hh-hccce-----------eeeecC--CCCCHHHHHH
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYR---K-LDTVR------FE-NLLMQ-----------QKSVSL--PYEDPVSFAI   56 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~---~-~~~~~------~~-~~Gi~-----------~r~~~~--~~e~~~~la~   56 (245)
                      .++++..++|-|+.  +++.+.+.+..   | .+++.      +. ++|+.           .+....  +.....+|+.
T Consensus        59 ~vylvd~~c~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~F~~~i~~rSGlg~et~~p~~~~~~~~~~~~~~~~~e~em~i  138 (466)
T PLN00415         59 PVYLVDFSCHQPTDSCKISSETFFNMAKGAQLYTEETIQFMTRILNRSGLGDDTYSPRCMLTSPPTPSMYEARHESELVI  138 (466)
T ss_pred             cEEEEeeeeecCCccccccHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCCCCeeeCCccccCCCCCChhhhHHHHHHHH
Confidence            58999999999885  67777766543   2 23322      11 34443           333221  2345677777


Q ss_pred             H-HHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecC-cchhHHHHHHHHHHHHhcCCCC
Q psy2407          57 N-AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQ-ACYSCTAGLQMAINFILSKVSP  134 (245)
Q Consensus        57 ~-Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~-~C~~~~~aL~~A~~~i~sg~~~  134 (245)
                      . |+++||+++ |++|+|||+||+ ++++.+..|+.+..++++||+++++.+||++. ||+|++.||.+|.++++++  +
T Consensus       139 ~~A~~~aL~~a-Gi~p~dID~LIv-s~T~~~~~Pslaa~l~~~LGLr~~v~~~dL~gmGCsggv~aL~lA~~ll~a~--~  214 (466)
T PLN00415        139 FGALNSLFKKT-GIEPREVGIFIV-NCSLFNPNPSLSSMIVNRYKLKTDVKTYNLSGMGCSAGAISVDLATNLLKAN--P  214 (466)
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEE-ECcCCCCCchHHHHHHHHhCCCCCceEEEeccccchHHHHHHHHHHHHHHhC--C
Confidence            7 677888997 999999999985 56787789999999999999987999999985 9999999999999999999  5


Q ss_pred             CCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCC
Q psy2407         135 GAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       135 ~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      .++||||++|.+|..+ +..+  +.+  ..+..+|||||+|+||+++
T Consensus       215 ~~~aLVVs~E~~S~~~~~~~d--r~~--lv~n~LFgDGAAAvlLs~~  257 (466)
T PLN00415        215 NTYAVIVSTENMTLSMYRGND--RSM--LVPNCLFRVGGAAVMLSNR  257 (466)
T ss_pred             CCEEEEEEEecccccccCCCc--HhH--hccceeecccceEEEEecC
Confidence            5999999999998765 4444  322  1246789999999999874

>PF08392 FAE1_CUT1_RppA: FAE1/Type III polyketide synthase-like protein; InterPro: IPR013601 This domain is found in proteins that are described as 3-ketoacyl-CoA synthases, type III polyketide synthases, fatty acid elongases and fatty acid condensing enzymes, and are found in both prokaryotic and eukaryotic (mainly plant) species

Probab=99.86  E-value=5.4e-21  Score=163.83  Aligned_cols=172  Identities=17%  Similarity=0.217  Sum_probs=140.2

Q ss_pred             eeEEeEEeEecCCc--eecHHHHHHHcC----CChHH------Hh-hccceeeeecCCC--------------CCHHHHH
Q psy2407           3 KVGIEAINLYGGSV--FIDVIELAKYRK----LDTVR------FE-NLLMQQKSVSLPY--------------EDPVSFA   55 (245)
Q Consensus         3 ~~~I~~i~~~lP~~--~v~~~~~~~~~~----~~~~~------~~-~~Gi~~r~~~~~~--------------e~~~~la   55 (245)
                      .++++..++|-|+.  +++.+.+.+...    .+++.      +. ++|+.++.+..+.              +.+..++
T Consensus         8 ~VYLvDfac~kP~~~~~v~~~~~~e~~~~~~~f~~~sl~F~~kIlerSGlG~eTy~P~~~~~~p~~~s~~~a~~Eae~v~   87 (290)
T PF08392_consen    8 PVYLVDFACYKPPDELRVSREEFIEHARRCGRFDEESLDFQRKILERSGLGDETYLPPALHEIPPDPSLAAAREEAEMVI   87 (290)
T ss_pred             CEEEEeeeecCCCcccccCHHHHHHHHHhcccCChhHHHHHHHHHHhcCCCccccCCcccccCCCcccHHHHHHHHHHHH
Confidence            58999999999985  578888877542    23332      22 6798888775431              1245688


Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHHHhcCCCC
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINFILSKVSP  134 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~sg~~~  134 (245)
                      ..|++++|+++ |++|+|||.||+.+++. .+.|+++++|++++|+++++..+++ ++||++++.++++|+++++..  |
T Consensus        88 f~av~~LL~kt-gv~p~dIdiLVvncs~f-~ptPSLsamIvnr~~mr~di~~~nLsGMGCsAgliai~lA~~lL~~~--p  163 (290)
T PF08392_consen   88 FGAVDDLLAKT-GVKPSDIDILVVNCSLF-NPTPSLSAMIVNRYGMRSDIKSYNLSGMGCSAGLIAIDLAKDLLQAH--P  163 (290)
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEEECcCC-CcCCcHHHHHHHHhCCCcCeeeecccCCcchhhHHHHHHHHHHHHhC--C
Confidence            89999999996 99999999999887774 7889999999999999989999999 579999999999999999999  6


Q ss_pred             CCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407         135 GAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       135 ~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~  181 (245)
                      +.+||||+.|..+..+.. +++|.+-  ....+|+|||+|+||+..+
T Consensus       164 ~~~ALVVstE~~s~~~Y~-G~~rsml--v~NcLFr~GgAAvLLSn~~  207 (290)
T PF08392_consen  164 NSYALVVSTENISANWYR-GNDRSML--VSNCLFRMGGAAVLLSNKP  207 (290)
T ss_pred             CcEEEEEEEeeccccccc-CCcHHHh--hccccccCCceeEEeecCc
Confidence            699999999999987743 4334432  2478999999999999754

The region contains the active site residues, as well as motifs involved in substrate binding []. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0006633 fatty acid biosynthetic process, 0016020 membrane

>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction

Probab=99.82  E-value=2.4e-19  Score=152.82  Aligned_cols=107  Identities=18%  Similarity=0.226  Sum_probs=99.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHh
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFIL  129 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~  129 (245)
                      +..+|+.+|+++||+++ |++++|||.|+++++++++..|+.+.+++..||++ +.++++++++|+|++.||.+|..+|+
T Consensus         6 ~~~~l~~~A~~~al~~a-g~~~~~i~~li~~~~~~~~~~~~~a~~i~~~lg~~-~~~~~~i~~~C~s~~~al~~A~~~i~   83 (254)
T cd00327           6 TASELGFEAAEQAIADA-GLSKGPIVGVIVGTTGGSGEFSGAAGQLAYHLGIS-GGPAYSVNQACATGLTALALAVQQVQ   83 (254)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCCCCceEEEEEECCCCccccHHHHHHHHHhCCC-CCCcceeccHhHHHHHHHHHHHHHHH
Confidence            47899999999999996 99999999999999999877899999999999995 78999999999999999999999999


Q ss_pred             cCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC
Q psy2407         130 SKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       130 sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      +|.+  +++||+++|.                    .+|||||+|+||++.
T Consensus        84 ~g~~--~~~lv~~~e~--------------------~~~gdGAaa~vL~~~  112 (254)
T cd00327          84 NGKA--DIVLAGGSEE--------------------FVFGDGAAAAVVESE  112 (254)
T ss_pred             CCCC--CEEEEEecce--------------------eeecceEEEEEECcH
Confidence            9976  9999999998                    149999999999874

Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.

>TIGR02845 spore_V_AD stage V sporulation protein AD

Probab=99.78  E-value=5e-18  Score=147.51  Aligned_cols=118  Identities=12%  Similarity=0.171  Sum_probs=96.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +++..+|+.+|+++||+++ |++++|||++++++. +++  +..+..+++.||+    +.|+++++|++++.||.+|..+
T Consensus        47 EkAe~eLa~eAa~~ALekA-GL~~~DID~IIvGdl-~~Q--~~~As~vA~~LGI----P~fdV~~ACSTf~~AL~lAa~l  118 (327)
T TIGR02845        47 EKAERKLMEDAVNLALKKA-NLKKDDVDFFLAGDL-LNQ--IITANFVARDLGI----PFLGLYGACSTSMETLALGAML  118 (327)
T ss_pred             chhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEeCC-CCc--ccHHHHHHHHhCC----CEEEEeccCHHHHHHHHHHHHH
Confidence            4677899999999999997 999999999998873 433  3468899999997    4599999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccc------cc-cCcccccccccccccccccceeEEEEecCC
Q psy2407         128 ILSKVSPGAKALVIATDISRF------FV-TEDKNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~------~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      |++|.+  ++|||+++|..+.      .. +|...++.+     ..+|||||+|+||++.
T Consensus       119 I~SG~a--d~VLVV~Ssh~S~AErqfr~p~eyg~q~~~t-----a~~tgdGAGA~vl~~~  171 (327)
T TIGR02845       119 VDGGFA--DRVLAATSSHYATAERQFRYPTEYGVQKPPT-----AQWTVTGAGAVLLAST  171 (327)
T ss_pred             HhCCCC--CEEEEEEecccchhhhhcccccccccCCCCe-----eeEEEcccEEEEEeec
Confidence            999977  9999999888873      22 341111222     3569999999999874

Bacillus and Clostridium species contain about 10 % dipicolinic acid (pyridine-2,6-dicarboxylic acid) by weight. This protein family, SpoVAD, belongs to the spoVA operon that is suggested to act in the transport of dipicolinic acid (DPA) from the mother cell, where DPA is synthesized, to the forespore, a process essential to sporulation. Members of this protein family are found, so far, in exactly those species believed capable of endospore formation.

>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated

Probab=99.75  E-value=3.3e-17  Score=146.58  Aligned_cols=176  Identities=15%  Similarity=0.093  Sum_probs=129.3

Q ss_pred             CceeEEeEEeEecCCce------------ecHHHHHHHcCCC-hHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhc
Q psy2407           1 MIKVGIEAINLYGGSVF------------IDVIELAKYRKLD-TVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNL   66 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~------------v~~~~~~~~~~~~-~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a   66 (245)
                      |.++.|.++|..-|--.            ++|.+...+.+.. .+|+. ++|+.+|++ ...+...+|+.+|+++||+++
T Consensus         2 ~~~v~I~~~g~vs~lG~~~~~~~aa~ragi~~~~~~~~~~~~~~~~i~~~~~~~~~~~-~~~~r~~~La~~Al~~aL~~a   80 (348)
T PRK06147          2 MRALAIVGSGMVTAVGLDAPSSCAAIRARLDNFQETRFIDPPGGEWLIGAPVPLPPPW-RGPERLAEMAAPAIAEALEGL   80 (348)
T ss_pred             CCceEEEecceeecCcCCHHHHHHHHHcccccccccccccCCCCCceEeecCcCCccc-CchHHHHHHHHHHHHHHHHhc
Confidence            45799999999888753            2232222333433 56776 788888887 446788999999999999997


Q ss_pred             CC-CCcCCcCEEEEEec-----cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEE
Q psy2407          67 SN-IDKNSIELIITCSE-----SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALV  140 (245)
Q Consensus        67 ~g-~~~~dId~li~~t~-----~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLV  140 (245)
                       + +++++|+++|+.+.     .++...+..+..++++||+....++++++.+|+|++.||..|..+|++|.+  +.+||
T Consensus        81 -~~~~~~~i~lil~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~~~~~~~i~~~casg~~Al~~A~~~i~~G~~--~~~lv  157 (348)
T PRK06147         81 -PALDASEAPLLLCVAEEERPGRPPDLEERLLRELEARLGLRLEPGSAVIARGRVSGAVALAQARRLIAAGGC--PRVLV  157 (348)
T ss_pred             -ccccccCCcEEEEeCchhcCCCCcchHHHHHHHHHHHhCCCCCCCcccccccchHHHHHHHHHHHHHHcCCC--CEEEE
Confidence             8 79999999987644     233445567889999999954467899999999999999999999999977  99999


Q ss_pred             EEecccccc--ccC-cccccc-cccccccccccceeEEEEecCC
Q psy2407         141 IATDISRFF--VTE-DKNELT-MEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       141 v~~e~~s~~--~~~-~~~~~~-~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      +++|.++..  +.. ....+. .+-.-..++|||||++++|++.
T Consensus       158 gg~d~~~~~~~~~~~~~~~~l~~~~~~~G~v~GEGA~a~vLe~~  201 (348)
T PRK06147        158 AGVDSLLTGPTLAHYEARDRLLTSQNSNGFIPGEAAAAVLLGRP  201 (348)
T ss_pred             EeeccccCHHHHHHHHHhhccCCCCCCCceeeeceEEEEEEccH
Confidence            999987652  111 000000 0000014679999999999873

>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction

Probab=99.74  E-value=2.4e-17  Score=145.82  Aligned_cols=125  Identities=17%  Similarity=0.143  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCC----cCCcCEEEEEeccCCCC---------------------CCcHHHHHHHHcCCCCCc
Q psy2407          51 PVSFAINAAAPLIDNLSNID----KNSIELIITCSESGIDF---------------------GKSMSTYIHHYLGLNRNC  105 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~----~~dId~li~~t~~~~~~---------------------~p~~a~~l~~~LGl~~~~  105 (245)
                      ..+|+++|+++||+++ |++    +++||.||++++++.+.                     .|+.+..|+..||+  +.
T Consensus        11 ~~~l~~~aa~~aL~~A-g~~~~~~~~~i~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl--~g   87 (332)
T cd00825          11 VSILGFEAAERAIADA-GLSREYQKNPIVGVVVGTGGGSPRFQVFGADAMRAVGPYVVTKAMFPGASGQIATPLGI--HG   87 (332)
T ss_pred             HHHHHHHHHHHHHHHc-CCCccccCCCCEEEEEEeCCccHHHHhhhhccccccCcchhhcccchHHHHHHHHHhCC--CC
Confidence            7899999999999997 999    99999999998876554                     67889999999999  46


Q ss_pred             ceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcc--------c-cccccc--ccccccccceeEE
Q psy2407         106 RLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDK--------N-ELTMEW--AFFEPSGGAGAVA  174 (245)
Q Consensus       106 ~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~--------~-~~~~~~--~~~~~~~GDGAaA  174 (245)
                      ++++++++|+|++.||+.|..+|++|.+  +++||+++|..+.......        + .+..++  .....+|||||+|
T Consensus        88 ~~~~v~~~cas~~~al~~A~~~i~~g~~--~~~Lv~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~gdGaaA  165 (332)
T cd00825          88 PAYDVSAACAGSLHALSLAADAVQNGKQ--DIVLAGGSEELAAPMDCEFDAMGALSTPEKASRTFDAAADGFVFGDGAGA  165 (332)
T ss_pred             CccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHhhccccCCCCCCCCCCCCCCCEEEEeeEEE
Confidence            8899999999999999999999999976  9999999998865442200        0 000011  0124579999999


Q ss_pred             EEecCC
Q psy2407         175 MLISDK  180 (245)
Q Consensus       175 ~ll~~~  180 (245)
                      +||++.
T Consensus       166 ~vL~~~  171 (332)
T cd00825         166 LVVEEL  171 (332)
T ss_pred             EEECcH
Confidence            999863

Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).

>PRK08304 stage V sporulation protein AD; Validated

Probab=99.69  E-value=7.2e-16  Score=134.40  Aligned_cols=119  Identities=14%  Similarity=0.125  Sum_probs=97.2

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +++..+|+.+|+++||+++ |++++|||++|+++.. .  .+..+..+++.||+    +++++.++|+++..+|.+|..+
T Consensus        53 EkAeseLa~eAa~~ALekA-GI~~~DID~lI~Gdll-~--Q~~sAs~vA~~LGI----Pa~dV~gACST~~~AL~lAa~l  124 (337)
T PRK08304         53 EKAERKMMEDAIQQALQKA-NLKKSDIDYLLAGDLL-N--QIISANFAARELGI----PFLGLYGACSTMMESLALGSML  124 (337)
T ss_pred             cccHHHHHHHHHHHHHHHc-CCCHHHCCEEEEECCC-C--CcchHHHHHHHhCC----cEEEEeccCHHHHHHHHHHHHH
Confidence            5678899999999999997 9999999999998752 2  23568899999997    6899999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccccc---cCc---ccccccccccccccccceeEEEEecCC
Q psy2407         128 ILSKVSPGAKALVIATDISRFFV---TED---KNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~~~---~~~---~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      |++|.+  ++|||++++..+...   ++.   +..|  +..  ...+++||.|+||++.
T Consensus       125 I~SG~a--d~VLVV~Ssh~s~aerqfr~P~eyg~qr--p~t--aqwtvtGAGA~i~~~~  177 (337)
T PRK08304        125 IDGGFA--DRVLAATSSHFATAERQFRFPTEYGGQR--PPT--AQWTVTGAGAVLLSRE  177 (337)
T ss_pred             HhcCCC--CEEEEEEcchhhhhhhhccCchhccccC--CCc--ceEEeeccEEEEEecC
Confidence            999977  999999999997762   110   0001  111  2458999999999875

>PF08545 ACP_syn_III: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III; InterPro: IPR013751 Fatty acid synthesis (FAS) is a vital aspect of cellular physiology which can occur by two distinct pathways

Probab=99.64  E-value=4.1e-16  Score=110.47  Aligned_cols=76  Identities=26%  Similarity=0.347  Sum_probs=62.3

Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCC--C--Ce
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK--P--EI  183 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~--~--~i  183 (245)
                      ||++++|+|++.||++|..+|++|.+  ++||||++|+.+..+++.+  +..     ..+|||||+|+||+++  +  ++
T Consensus         1 fDi~~~C~g~~~al~~A~~~i~~g~~--~~~Lvv~~d~~s~~~~~~~--~~~-----~~~~gDgAaA~vl~~~~~~~~~i   71 (80)
T PF08545_consen    1 FDINQACAGFLYALDVAAALIASGRA--KNALVVGGDRLSRIVDRTD--RQT-----AFIFGDGAAAVVLSRDEEGGFGI   71 (80)
T ss_dssp             EEEE-GGGHHHHHHHHHHHHHHTTS---SEEEEEEEEEGGGGSHTTH--HHH-----HTTB-EEEEEEEEEEESSSSCEE
T ss_pred             CcccccchHHHHHHHHHHHHHhhccC--CEEEEEeeccccccccccc--cCc-----ceeecchheEEEEEecCCCCCeE
Confidence            79999999999999999999999966  9999999999999887655  221     3579999999999984  2  58


Q ss_pred             eEEeecccc
Q psy2407         184 FQFDIGSNG  192 (245)
Q Consensus       184 ~~~~~~~~g  192 (245)
                      +++.+++||
T Consensus        72 l~~~~~tdG   80 (80)
T PF08545_consen   72 LDSHLRTDG   80 (80)
T ss_dssp             EEEEEEE-G
T ss_pred             EEEEEEcCC
Confidence            999988886

The FAS I pathway, which generally only produces palmitate, is found in eukaryotes and is performed either by a single polypeptide which contains all the reaction centres needed to form a fatty acid, or by two polypeptides which interact to form a multifunctional complex. The FAS II pathway, which is capable of producing many different fatty acids, is found in mitochondria, bacteria, plants and parasites, and is performed by many distinct proteins, each of which catalyses a single step within the pathway. The large diversity of products generated by this pathway is possible because the acyl carrier protein (ACP) intermediates are diffusible entities that can be diverted into other biosynthetic pathways []. 3-Oxoacyl-[acyl carrier protein (ACP)] synthase III catalyses the first condensation step within the FAS II pathway, using acetyl-CoA as the primer and malonyl-ACP as the acceptor, as shown below. Acyl-[ACP] + malonyl-[ACP] = 3-oxoacyl-[ACP] + CO(2) + [ACP] The oxoacyl-ACP formed by this reaction subsequently enters the elongation cycle, where the acyl chain is progressively lengthened by the combined activities of several enzymes. The enzymes studied so far are homodimers, where each monomer consists of two domains (N-terminal and C-terminal) which are similar in structure, but not in sequence [, ]. This entry represents a conserved region within the N-terminal domain.; GO: 0004315 3-oxoacyl-[acyl-carrier-protein] synthase activity, 0006633 fatty acid biosynthetic process; PDB: 1ZOW_C 1UB7_B 3IL7_A 3IL3_A 2X3E_B 4DFE_C 3LED_B 3ROW_B 3S23_A 3S1Z_A ....

>cd00751 thiolase Thiolase are ubiquitous enzymes that catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine

Probab=99.62  E-value=2e-15  Score=136.88  Aligned_cols=100  Identities=11%  Similarity=0.099  Sum_probs=90.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .++++..+|+.+|+++||+++ |++++|||.||+++.++++..|..+..++..||+++++++++++++|+|++.+|..|.
T Consensus        17 ~~~~~~~~La~~A~~~AL~dA-gl~~~dID~vi~~~~~~~~~~~~~a~~v~~~lGl~~~~~~~~v~~~c~s~~~al~~A~   95 (386)
T cd00751          17 LKDVSADDLGAAVIKALLERA-GLDPEEVDDVIMGNVLQAGEGQNPARQAALLAGLPESVPATTVNRVCGSGLQAVALAA   95 (386)
T ss_pred             CCCCCHHHHHHHHHHHHHHhc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCchhhhccccHHHHHHHHHHH
Confidence            346899999999999999997 9999999999998887766678888889999999545899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  ++|||+++|++|.
T Consensus        96 ~~I~sG~~--~~vLv~g~e~~s~  116 (386)
T cd00751          96 QSIAAGEA--DVVVAGGVESMSR  116 (386)
T ss_pred             HHHHCCCC--CeEEEeeeecccc
Confidence            99999977  9999999998754

They are found in prokaryotes and eukaryotes (cytosol, microbodies and mitochondria). There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.

>PRK07108 acetyl-CoA acetyltransferase; Provisional

Probab=99.59  E-value=9.3e-15  Score=132.71  Aligned_cols=111  Identities=8%  Similarity=0.066  Sum_probs=96.4

Q ss_pred             hccceeeeec-CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCc
Q psy2407          36 NLLMQQKSVS-LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQA  113 (245)
Q Consensus        36 ~~Gi~~r~~~-~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~  113 (245)
                      ++++.+|+.. ..++++.+|+.+|+++||+++ |+++++||.||+++.+++...| ..+..++..+|++.++++++|+++
T Consensus        11 rTpfgk~~~~~l~~~~~~dL~~~A~~~aL~~a-gi~~~~ID~vi~G~~~~~~~~~~~~a~~i~~~lGl~~~~p~~~V~~a   89 (392)
T PRK07108         11 RTPLAKSWRGAFNMTHGATLGGHVVQHAVERA-KLDPAEVEDVIMGCANPEGATGANIARQIALRAGLPVTVPGMTVNRF   89 (392)
T ss_pred             cCCccccCCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCcEEEEEeecccccccHHHHHHHHHcCCCCCCceeeecch
Confidence            4566554322 357889999999999999996 9999999999999988776655 488999999999656999999999


Q ss_pred             chhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         114 CYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       114 C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |+|++.||..|..+|++|.+  +.+|+++.|++|..
T Consensus        90 CaSg~~Al~~A~~~I~sG~~--d~vlagGvE~ms~~  123 (392)
T PRK07108         90 CSSGLQTIALAAQRVIAGEG--DVFVAGGVESISCV  123 (392)
T ss_pred             hhHHHHHHHHHHHHHHCCCC--CEEEEEEEeccCCC
Confidence            99999999999999999977  99999999999853

>PRK05656 acetyl-CoA acetyltransferase; Provisional

Probab=99.57  E-value=1.6e-14  Score=131.29  Aligned_cols=99  Identities=13%  Similarity=0.135  Sum_probs=89.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+++..+|+.+|+++||+++ |++++|||.||+++.++....+..+..++..||++..+++++|+++|+|++.++..|.+
T Consensus        22 ~~~~~~~La~~A~~~AL~~a-gl~~~dID~vi~g~~~~~~~~~~~a~~va~~lGl~~~~p~~~V~~~Casg~~ai~~A~~  100 (393)
T PRK05656         22 ANIPAVELGAAVIRRLLEQT-GLDPAQVDEVILGQVLTAGAGQNPARQAAIKAGLPHSVPAMTLNKVCGSGLKALHLAAQ  100 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEecCCCCCCcHHHHHHHHcCCCCCcceEEecccchhHHHHHHHHHH
Confidence            57889999999999999997 99999999999998876544667788999999995448999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +++||+++|++|.
T Consensus       101 ~I~sG~~--d~vLv~G~E~ms~  120 (393)
T PRK05656        101 AIRCGDA--EVIIAGGQENMSL  120 (393)
T ss_pred             HHHcCCC--CEEEEEEEhhhcc
Confidence            9999977  9999999998875

>TIGR01930 AcCoA-C-Actrans acetyl-CoA acetyltransferases

Probab=99.57  E-value=1.8e-14  Score=130.73  Aligned_cols=98  Identities=10%  Similarity=0.097  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +++..+|+.+|+++||+++ |++++|||.+++++.+++...|..+..++..+|++.++++++++++|++++.+|..|..+
T Consensus        18 ~~t~~~La~~A~~~Al~dA-gl~~~dID~vv~g~~~~~~~~~~~a~~va~~lGl~~~~~~~~v~~~Casg~~al~~A~~~   96 (386)
T TIGR01930        18 DVSAEDLGAAVIKELLERN-PLDPELIDDVIFGNVLQAGEQQNIARQAALLAGLPESVPAYTVNRQCASGLQAVILAAQL   96 (386)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCceeeeecchhhHHHHHHHHHHHH
Confidence            6889999999999999997 999999999999888776656777889999999964589999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++|.+  +++||+++|+++.
T Consensus        97 I~sG~~--~~vLv~g~e~~s~  115 (386)
T TIGR01930        97 IRAGEA--DVVVAGGVESMSR  115 (386)
T ss_pred             HHCCCC--CEEEEEEehhhcc
Confidence            999987  9999999998754

This model represents a large family of enzymes which catalyze the thiolysis of a linear fatty acid CoA (or acetoacetyl-CoA) using a second CoA molecule to produce acetyl-CoA and a CoA-ester product two carbons shorter (or, alternatively, the condensation of two molecules of acetyl-CoA to produce acetoacetyl-CoA and CoA). This enzyme is also known as "thiolase", "3-ketoacyl-CoA thiolase", "beta-ketothiolase" and "Fatty oxidation complex beta subunit". When catalyzing the degradative reaction on fatty acids the corresponding EC number is 2.3.1.16. The condensation reaction corresponds to 2.3.1.9. Note that the enzymes which catalyze the condensation are generally not involved in fatty acid biosynthesis, which is carried out by a decarboxylating condensation of acetyl and malonyl esters of acyl carrier proteins. Rather, this activity may produce acetoacetyl-CoA for pathways such as IPP biosynthesis in the absence of sufficient fatt

>PRK06205 acetyl-CoA acetyltransferase; Provisional

Probab=99.56  E-value=2e-14  Score=131.07  Aligned_cols=100  Identities=12%  Similarity=0.049  Sum_probs=92.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+++..+|+.+|+++||+++ |++++|||.|+++++++....|+.+..++..+|++.++++++|+.+|+|++.++..|.+
T Consensus        22 ~~~~~~eLa~~A~~~AL~~a-gl~~~dID~vv~g~~~~~~~~~~~a~~va~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~  100 (404)
T PRK06205         22 KDVPAEELAATVIRALVERT-GIDPARIDDVIFGQGYPNGEAPAIGRVAALDAGLPVTVPGMQLDRRCGSGLQAVITAAM  100 (404)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCCChHHHHHHHHcCCCCCCceeehhhhhhHHHHHHHHHHH
Confidence            47889999999999999997 99999999999999888777788888999999996578999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +|++|.+  +.+||+++|++|..
T Consensus       101 ~I~sG~~--d~vLv~G~E~ms~~  121 (404)
T PRK06205        101 QVQTGAA--DVVIAGGAESMSNV  121 (404)
T ss_pred             HHHcCCC--CEEEEeeehhhccC
Confidence            9999977  99999999998754

>PRK08235 acetyl-CoA acetyltransferase; Provisional

Probab=99.56  E-value=2.5e-14  Score=130.01  Aligned_cols=100  Identities=11%  Similarity=0.043  Sum_probs=89.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+++..+|+.+|+++||+++ |++++|||.||+++.++....+.++..++..+|++.++++++|+++|+||+.++..|..
T Consensus        22 ~~~~~~eLa~~A~~~aL~~a-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~V~~~CaSg~~Al~~A~~  100 (393)
T PRK08235         22 KDVKATELGGIAIKEALERA-NVSAEDVEEVIMGTVLQGGQGQIPSRQAARAAGIPWEVQTETVNKVCASGLRAVTLADQ  100 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccCCCCCCHHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHH
Confidence            57899999999999999997 99999999999998876323445677789999996579999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +|++|.+  +.+||+++|++|..
T Consensus       101 ~I~sG~~--d~vLvvG~E~ms~~  121 (393)
T PRK08235        101 IIRAGDA--SVIVAGGMESMSNA  121 (393)
T ss_pred             HHHCCCC--CEEEEEeeeccccC
Confidence            9999977  99999999998753

>PRK09051 beta-ketothiolase; Provisional

Probab=99.54  E-value=4e-14  Score=128.66  Aligned_cols=99  Identities=11%  Similarity=0.079  Sum_probs=88.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC-CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG-KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~-p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+++..+|+.+|+++||+++ |++++|||.||++++++.+.. +..+..++..+|+++++++++|+++|+||+.++..|.
T Consensus        23 ~~~~~~eL~~~A~~~AL~~a-gi~~~dID~vi~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A~  101 (394)
T PRK09051         23 KDVAPTDLGATVVREALARA-GVDPDQVGHVVFGHVIPTEPRDMYLSRVAAINAGVPQETPAFNVNRLCGSGLQAIVSAA  101 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEeeeccccCCCccHHHHHHHHcCCCCCCceEEecccchHHHHHHHHHH
Confidence            57889999999999999997 999999999999998875543 4567777788899656899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  +++||+++|++|.
T Consensus       102 ~~I~sG~~--d~vLvvG~E~mS~  122 (394)
T PRK09051        102 QAILLGDA--DVAIGGGAESMSR  122 (394)
T ss_pred             HHHHcCCC--CEEEEEeehhccc
Confidence            99999977  9999999999875

>PRK08242 acetyl-CoA acetyltransferase; Validated

Probab=99.52  E-value=8.7e-14  Score=126.50  Aligned_cols=101  Identities=14%  Similarity=0.134  Sum_probs=90.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ..+.++.+|+.+|++++|+++ |+++++||.||+++.++... .+..+..++..+|++.++++++|+++|+||+.||.+|
T Consensus        23 l~~~~~~dLa~~A~~~al~~a-gi~p~~ID~vi~G~~~~~~~~~~~~~r~a~~~~Gl~~~~pa~~Vn~aCaSg~~Ai~~A  101 (402)
T PRK08242         23 LHEVKPVRLAAGLLEALRDRN-GLDTAAVDDVVLGCVTPVGDQGADIARTAVLAAGLPETVPGVQINRFCASGLEAVNLA  101 (402)
T ss_pred             CCCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCCCccccccHHHHHHHHcCCCCCCCeEEEcchhhhHHHHHHHH
Confidence            457889999999999999996 99999999999999987544 3456777778899976799999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .++|++|.+  +.+|++++|++|..
T Consensus       102 ~~~I~sG~~--d~vLv~G~E~mS~~  124 (402)
T PRK08242        102 AAKVRSGWD--DLVIAGGVESMSRV  124 (402)
T ss_pred             HHHHHcCCC--CEEEEEEEEccCCC
Confidence            999999977  99999999999863

>PRK12578 acetyl-CoA acetyltransferase; Provisional

Probab=99.50  E-value=1.5e-13  Score=124.61  Aligned_cols=98  Identities=14%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      ++++..+|+.+|+++||+++ |++++|||.+|+++.++....+..+..++..||++ +.++++++++|+|++.+|..|..
T Consensus        17 ~~~~~~eLa~~A~~~AL~dA-gi~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~-~~~~~~v~~~casg~~al~~A~~   94 (385)
T PRK12578         17 DDVSVQELAWESIKEALNDA-GVSQTDIELVVVGSTAYRGIELYPAPIVAEYSGLT-GKVPLRVEAMCATGLAASLTAYT   94 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccccccCChHHHHHHHhCCC-CCCeeEEeccCHHHHHHHHHHHH
Confidence            57889999999999999997 99999999999988776433344578899999995 56779999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +++||+++|+++.
T Consensus        95 ~I~sG~~--~~vLvvg~e~~s~  114 (385)
T PRK12578         95 AVASGLV--DMAIAVGVDKMTE  114 (385)
T ss_pred             HHHCCCC--CEEEEEEEeeccc
Confidence            9999977  9999999998764

>PF00108 Thiolase_N: Thiolase, N-terminal domain; InterPro: IPR020616 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2

Probab=99.50  E-value=1.2e-13  Score=119.20  Aligned_cols=101  Identities=18%  Similarity=0.175  Sum_probs=89.6

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ..+.++.+|+.+|++.+|+++ ++++++||.|++++..+....+.++..++-.+|++..++++.|++.|+|++.|+..|.
T Consensus        21 l~~~~~~~L~~~a~~~al~~~-~i~~~~Id~v~~G~~~~~~~g~~~ar~~~l~aGl~~~vp~~~V~~~CaSG~~Av~~a~   99 (264)
T PF00108_consen   21 LADVSPEDLAAEAVKAALERA-GIDPEDIDAVIVGNVLQEGEGQNIARQAALAAGLPESVPATTVNRACASGLQAVHLAA   99 (264)
T ss_dssp             TTTS-HHHHHHHHHHHHHHHH-TSHGGGEEEEEEE-SSSCTTTCHHHHHHHHHTTS-TTSEEEEEE-GGGHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHhc-ccchhhhhhcCcccccccccchhhhhhhhhhcccccccceeeehhhhhHHHHHHHHhh
Confidence            457899999999999999997 9999999999999988866677889999999999778999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEecccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ..|++|.+  +.+|++++|++|..
T Consensus       100 ~~I~sG~~--dvvlagGvE~mS~~  121 (264)
T PF00108_consen  100 MAIASGEA--DVVLAGGVESMSRV  121 (264)
T ss_dssp             HHHHTTS---SEEEEEEEEETTTS
T ss_pred             hhhcCCCc--cEEEEecccccccc
Confidence            99999977  99999999999976

3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 1PXT_B 1AFW_B 1WL4_A 1WL5_A 4E1L_B 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2WUA_B ....

>PRK09052 acetyl-CoA acetyltransferase; Provisional

Probab=99.48  E-value=2.3e-13  Score=123.84  Aligned_cols=99  Identities=12%  Similarity=0.044  Sum_probs=85.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcC-CCCcCCcCEEEEEeccCCCCCCcH-HHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLS-NIDKNSIELIITCSESGIDFGKSM-STYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~-g~~~~dId~li~~t~~~~~~~p~~-a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+++..+|+.+|+++||++ + |++++|||.||+++++++...+.. +..+...+|++..+++++|+++|+||+.|+..|
T Consensus        27 ~~~s~~eLa~~A~~~AL~~-a~gl~~~dID~vi~g~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~aCaSg~~Al~~A  105 (399)
T PRK09052         27 KNTRPDDLLAHVLRSAVAQ-VPGLDPKLIEDAIVGCAMPEAEQGLNVARIGALLAGLPNSVGGVTVNRFCASGLQAVAMA  105 (399)
T ss_pred             CCCCHHHHHHHHHHHHHHh-ccCcCHHHCCEEEEEecCCCCCCCchHHHHHHHHcCCCCCCceeeecchhhHHHHHHHHH
Confidence            3688999999999999999 4 999999999999988876554444 444566679954589999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +++||+++|++|.
T Consensus       106 ~~~I~sG~~--d~vLv~G~E~mS~  127 (399)
T PRK09052        106 ADRIRVGEA--DVMIAAGVESMSM  127 (399)
T ss_pred             HHHHHCCCC--CEEEEEEEecccc
Confidence            999999977  9999999998875

>PRK08170 acetyl-CoA acetyltransferase; Provisional

Probab=99.47  E-value=2.7e-13  Score=124.45  Aligned_cols=98  Identities=12%  Similarity=0.118  Sum_probs=88.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +.+..+|+.+|+++||+++ |++++|||.||+++.++....++.+..++..||++.++++++++++|+|++.++..|..+
T Consensus        24 ~~~~~~L~~~A~~~Al~dA-gl~~~dID~vi~g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~~CaSg~~al~~A~~~  102 (426)
T PRK08170         24 PFSASDLAVAAGRALLNRQ-PFAPDDLDEVILGCAMPSPDEANIARVVALRLGCGEKVPAWTVQRNCASGMQALDSAAAN  102 (426)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCcChHHHHHHHHhCcCCCceeeeccchhhHHHHHHHHHHHH
Confidence            5789999999999999997 999999999999877654444677889999999954689999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++|.+  +++||+++|++|.
T Consensus       103 I~sG~~--d~vLv~G~E~ms~  121 (426)
T PRK08170        103 IALGRA--DLVLAGGVEAMSH  121 (426)
T ss_pred             HHCCCC--CEEEEEEEecccC
Confidence            999977  9999999998875

>PRK08313 acetyl-CoA acetyltransferase; Provisional

Probab=99.47  E-value=3.2e-13  Score=122.53  Aligned_cols=97  Identities=12%  Similarity=0.092  Sum_probs=84.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC--CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG--KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~--p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ++++..+|+.+|+++||+++ |++++|||.+++++ ++++..  +..+..+++.||+ ...++++++++|+++..++..|
T Consensus        20 ~~~s~~eL~~eAa~~Al~dA-gl~~~dID~iv~~~-~~~~~~~~~~~~~~va~~LGl-~~~~~~~v~~~casg~~al~~A   96 (386)
T PRK08313         20 QDVSMAGLVREAIDRALADA-GLTWDDIDAVVVGK-APDFFEGVMMPELFLADALGA-TGKPLIRVHTAGSVGGSTAVVA   96 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEec-cccccccccCchHHHHHhcCC-CCCceEEEeccCHHHHHHHHHH
Confidence            57889999999999999997 99999999999887 454321  2334789999999 4678999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  ++||||++|+++.
T Consensus        97 ~~~I~sG~~--~~vLVvg~e~~s~  118 (386)
T PRK08313         97 ASLVQSGVY--RRVLAVAWEKQSE  118 (386)
T ss_pred             HHHHHCCCC--CEEEEEEEEEccC
Confidence            999999987  9999999998754

>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II

Probab=99.46  E-value=3.7e-12  Score=115.87  Aligned_cols=126  Identities=15%  Similarity=0.142  Sum_probs=91.9

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCC--------------------------CCCCcHHHHHHHHc
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGI--------------------------DFGKSMSTYIHHYL   99 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~--------------------------~~~p~~a~~l~~~L   99 (245)
                      ....|+.+|+++||+++ |+++++||.    +++++..+.                          ...+..+..|+..|
T Consensus        70 ~~~~l~~~aa~~AL~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~l  148 (406)
T cd00834          70 RFAQFALAAAEEALADA-GLDPEELDPERIGVVIGSGIGGLATIEEAYRALLEKGPRRVSPFFVPMALPNMAAGQVAIRL  148 (406)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCcccCCccceEEEEccCCcchHHHHHHHHHHHhcCCcccChhHHhhhcccHHHHHHHHHh
Confidence            45689999999999997 999877664    555554321                          12245788999999


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcc--cc-cccccc--c
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDK--NE-LTMEWA--F  163 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~--~~-~~~~~~--~  163 (245)
                      |++  .+.+.++.+|+|++.||..|..+|++|.+  +++||+++|..+..           +....  +. ...++.  .
T Consensus       149 gl~--g~~~~v~~acas~~~Al~~A~~~i~~G~~--d~aLvgg~d~~~~p~~~~~~~~~~~l~~~~~~p~~~~~pf~~~~  224 (406)
T cd00834         149 GLR--GPNYTVSTACASGAHAIGDAARLIRLGRA--DVVIAGGAEALITPLTLAGFAALRALSTRNDDPEKASRPFDKDR  224 (406)
T ss_pred             CCC--CcccccchHHHHHHHHHHHHHHHHHcCCC--CEEEEcCcccccCHHHHHHHHhcCCcCCCCCCCccCCCCCCCCC
Confidence            994  47889999999999999999999999977  99999999987621           11110  00 011111  0


Q ss_pred             ccccccceeEEEEecCC
Q psy2407         164 FEPSGGAGAVAMLISDK  180 (245)
Q Consensus       164 ~~~~~GDGAaA~ll~~~  180 (245)
                      ...++||||+|+||++.
T Consensus       225 ~g~~~geGA~a~vL~~~  241 (406)
T cd00834         225 DGFVLGEGAGVLVLESL  241 (406)
T ss_pred             CCEeeeccEEEEEEecH
Confidence            13579999999999863

KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.

>PRK05790 putative acyltransferase; Provisional

Probab=99.46  E-value=4.4e-13  Score=121.90  Aligned_cols=98  Identities=9%  Similarity=0.077  Sum_probs=85.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+++..+|+.+|+++||+++ |++++|||.+++++.++....+..+..++..+|++.++++++++++|+|++.+|..|..
T Consensus        22 ~~~~~~~La~~A~~~AL~dA-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~gl~~~~~~~~v~~~Casg~~al~~A~~  100 (393)
T PRK05790         22 KDVSAVELGAIVIKAALERA-GVPPEQVDEVIMGQVLQAGAGQNPARQAALKAGLPVEVPALTINKVCGSGLKAVALAAQ  100 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCeEEEEEecCCCCCCcHHHHHHHHcCCCCCCceeeecccchHHHHHHHHHHH
Confidence            36889999999999999997 99999999999988765434455566677788995468899999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccc
Q psy2407         127 FILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s  147 (245)
                      +|++|.+  +++||+++|++|
T Consensus       101 ~I~sG~~--d~vLv~G~e~~s  119 (393)
T PRK05790        101 AIRAGDA--DIVVAGGQESMS  119 (393)
T ss_pred             HHHcCCC--CEEEEEeeeccc
Confidence            9999977  999999999874

>PRK06954 acetyl-CoA acetyltransferase; Provisional

Probab=99.46  E-value=3.6e-13  Score=122.56  Aligned_cols=99  Identities=9%  Similarity=0.052  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|+++||+++ |++++|||.+|+++..++....+.+......+|++..+++++|+++|+||+.++..|..
T Consensus        27 ~~~~~~eL~~~a~~~aL~~A-gi~~~dID~vi~G~~~~~~~~~~~~~~~~l~ag~~~~~p~~~V~~aCaSG~~Av~~A~~  105 (397)
T PRK06954         27 ASLTAPQLGAAAIAAAVERA-GLKPEQIDEVVMGCVLPAGQGQAPARQAALGAGLPLSVGCTTVNKMCGSGMRAAMFAHD  105 (397)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCCCccchHHHHHHHHcCCCCCCccEeeccccchHHHHHHHHHHH
Confidence            46789999999999999996 99999999999998776544344454555567785568999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +.+||+++|++|.
T Consensus       106 ~I~sG~~--d~vLv~G~E~ms~  125 (397)
T PRK06954        106 MLVAGSV--DVIVAGGMESMTN  125 (397)
T ss_pred             HHHCCCC--CEEEEEeeeccCC
Confidence            9999987  9999999999973

>smart00825 PKS_KS Beta-ketoacyl synthase

Probab=99.46  E-value=1.2e-12  Score=119.83  Aligned_cols=122  Identities=15%  Similarity=0.126  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCCC-------------------CCcHHHHHHHHcCCCCCcce
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGIDF-------------------GKSMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~~-------------------~p~~a~~l~~~LGl~~~~~~  107 (245)
                      ...|+.+|+++||+++ |+++++||    .|++++.++++.                   .+..+..++..||+.  -++
T Consensus        87 ~~~l~~~aa~~Al~dA-Gl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~lgl~--g~~  163 (424)
T smart00825       87 QQRLLLEVAWEALEDA-GIDPESLRGSRTGVFVGAMSSDYAELLARDPEDIEGYAATGTARSFIANRISYFFDLR--GPS  163 (424)
T ss_pred             HHHHHHHHHHHHHHHc-CCChhHcCCCCCEEEEEEcHHHHHHHHhhCccccchhhhccchhHHHHHHHHHHhCCC--CCc
Confidence            3459999999999997 99999999    788887654332                   345677899999994  378


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcccccccccc--cccccccceeEE
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWA--FFEPSGGAGAVA  174 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~--~~~~~~GDGAaA  174 (245)
                      +++..+|++++.||..|..+|++|.+  +.+||+++|.....           +.+..  ...++.  ....++||||+|
T Consensus       164 ~~v~~acasg~~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~l~~~~--~~~pf~~~~~g~~~geGAaa  239 (424)
T smart00825      164 VTVDTACSSSLVALHLACQSLRSGEC--DMALAGGVNLILSPDTFVGFSRAGMLSPDG--RCKTFDADADGYVRGEGVGV  239 (424)
T ss_pred             cccccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeecCCHHHHHHHhhcCCCCCCC--CCCCCCCCCCcccccceEEE
Confidence            99999999999999999999999977  99999999975321           11111  011111  023568999999


Q ss_pred             EEecC
Q psy2407         175 MLISD  179 (245)
Q Consensus       175 ~ll~~  179 (245)
                      +||++
T Consensus       240 lVLe~  244 (424)
T smart00825      240 VVLKR  244 (424)
T ss_pred             EEEcc
Confidence            99986

The structure of beta-ketoacyl synthase is similar to that of the thiolase family and also chalcone synthase. The active site of beta-ketoacyl synthase is located between the N and C-terminal domains.

>PRK12404 stage V sporulation protein AD; Provisional

Probab=99.44  E-value=2e-12  Score=112.38  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=79.8

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      ++...+|+.+|+++||+++ |++++|||.++.++.+ .+..|+  ..+++.||+    |.+++.++|+++..+|.+|..+
T Consensus        51 EkAE~~L~~EA~~~AL~kA-GI~~~DID~i~vGdL~-nQ~ips--sfvar~LGI----P~~gV~gACSTg~eAL~lAa~~  122 (334)
T PRK12404         51 EKAERKLLEEACSRAIEKA-KLRKEDIQFFLAGDLM-NQITPT--SFAARTLGI----PYLGLFGACSTSMEGLALAALI  122 (334)
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecC-CCcCcH--HHHHHHhCC----CccceeecCHHHHHHHHHHHHH
Confidence            4556789999999999997 9999999999999887 345554  499999996    3489999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEecccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |++|.+  ++||++++-.....
T Consensus       123 VaSG~A--d~VLavtsSH~~~a  142 (334)
T PRK12404        123 VNSGGA--KYVLTGASSHNAAV  142 (334)
T ss_pred             HHcCCC--CEEEEEeCcccchh
Confidence            999977  99999998776443

>cd00826 nondecarbox_cond_enzymes nondecarboxylating condensing enzymes; In general, thiolases catalyze the reversible thiolytic cleavage of 3-ketoacyl-CoA into acyl-CoA and acetyl-CoA, a 2-step reaction involving a covalent intermediate formed with a catalytic cysteine

Probab=99.43  E-value=8.6e-13  Score=119.98  Aligned_cols=98  Identities=14%  Similarity=0.115  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHH-HHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMST-YIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~-~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ..+.+.+|+.+|+++||+++ +++++|||.||+++.++++..+..+. .+++.+|+ .++++++|+++|+|++.++..|.
T Consensus        19 ~~~~~~el~~~a~~~Al~~a-gl~p~dID~vi~g~~~~~~~g~~~~~~~~~~~lg~-~~~p~~~V~~~Casg~~al~~A~   96 (393)
T cd00826          19 ANDLAHEAGAKAIAAALEPA-GVAAGAVEEACLGQVLGAGEGQNCAQQAAMHAGGL-QEAPAIGMNNLCGSGLRALALAM   96 (393)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEccCCcccCcHHHHHHHHcCCC-CCCcEEEecchhHHHHHHHHHHH
Confidence            35678999999999999996 99999999999998887655556665 36788888 57899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  +.+||+++|++|.
T Consensus        97 ~~I~sG~~--~~vlv~g~e~~s~  117 (393)
T cd00826          97 QLIAGGDA--NCILAGGFEKMET  117 (393)
T ss_pred             HHHHCCCC--CEEEEEeeecccc
Confidence            99999977  9999999999864

There are 2 functional different classes: thiolase-I (3-ketoacyl-CoA thiolase) and thiolase-II (acetoacetyl-CoA thiolase). Thiolase-I can cleave longer fatty acid molecules and plays an important role in the beta-oxidative degradation of fatty acids. Thiolase-II has a high substrate specificity. Although it can cleave acetoacyl-CoA, its main function is the synthesis of acetoacyl-CoA from two molecules of acetyl-CoA, which gives it importance in several biosynthetic pathways.

>PRK06059 lipid-transfer protein; Provisional

Probab=99.42  E-value=1.1e-12  Score=119.58  Aligned_cols=97  Identities=22%  Similarity=0.240  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGID-FGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~-~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      +++..+|+.+|+++||+++ |++++|||.||++++.+.. ..+..+..++..||+ ..+++++++++|++++.+|..|..
T Consensus        20 ~~~~~~La~~A~~~Al~dA-gl~~~dId~vi~~~~~~~~~~~~~~a~~va~~lG~-~~~~~~~v~~~Casg~~al~~A~~   97 (399)
T PRK06059         20 GRDFVEYGVVAARAALADA-GLDWRDVQLVVGADTIRNGYPGFVAGATFAQALGW-NGAPVSSSYAACASGSQALQSARA   97 (399)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCccCCccHHHHHHHHhCC-CCCceecccchhHHHHHHHHHHHH
Confidence            5678999999999999997 9999999999988766543 334567899999999 468899999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +++||+++|+++.
T Consensus        98 ~I~sG~~--~~vLvvg~e~~s~  117 (399)
T PRK06059         98 QILAGLC--DVALVVGADTTPK  117 (399)
T ss_pred             HHHCCCC--CEEEEEEEcccCC
Confidence            9999977  9999999998764

>PLN02287 3-ketoacyl-CoA thiolase

Probab=99.42  E-value=1.3e-12  Score=120.55  Aligned_cols=99  Identities=7%  Similarity=0.069  Sum_probs=86.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+.+..+|+.+|+++||+++ |++++|||.||+++.++....+ ..+..++..+|+++.+++++|+.+|+|++.++..|.
T Consensus        67 ~~~s~~eLa~eA~~~AL~dA-gl~~~dID~vv~G~~~~~~~~~~~~~r~~a~~~Gl~~~~pa~~V~~~CaSG~~Ai~~Aa  145 (452)
T PLN02287         67 KDTYPDDLLAPVLKAVVEKT-GLNPSEVGDIVVGTVLAPGSQRANECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADVA  145 (452)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeecCcccccchHHHHHHHHCCCCCCcceEEEeccCchHHHHHHHHH
Confidence            47899999999999999997 9999999999998876655443 345677788999656899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..|++|.+  +.+||++.|++|.
T Consensus       146 ~~I~sG~~--dvvLv~GvE~mS~  166 (452)
T PLN02287        146 AAIKAGFY--DIGIGAGVESMTT  166 (452)
T ss_pred             HHHHcCCC--CeEEEEeEEecCC
Confidence            99999977  9999999998864

>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism

Probab=99.41  E-value=1.3e-12  Score=117.92  Aligned_cols=98  Identities=21%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +.+..+|+.+|+++||+++ |+++++||.++++++.+....+..+..++..||++ .+++++++++|++++.++..|..+
T Consensus        13 ~~~~~eL~~~A~~~Al~da-gl~~~~Id~vi~g~~~~~~~~~~~a~~va~~lGl~-~~~~~~v~~~c~sg~~al~~Aa~~   90 (375)
T cd00829          13 DRSPLELAAEAARAALDDA-GLEPADIDAVVVGNAAGGRFQSFPGALIAEYLGLL-GKPATRVEAAGASGSAAVRAAAAA   90 (375)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecccccccccchHHHHHHHcCCC-CcceeeEeCccHHHHHHHHHHHHH
Confidence            7889999999999999997 99999999999988776554577889999999995 789999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEecccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |++|.+  +.+||+++|+++..
T Consensus        91 I~sG~~--~~vlv~g~e~~s~~  110 (375)
T cd00829          91 IASGLA--DVVLVVGAEKMSDV  110 (375)
T ss_pred             HHhCCC--CEEEEEEEeecccC
Confidence            999977  99999999988653

The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.

>PRK07661 acetyl-CoA acetyltransferase; Provisional

Probab=99.41  E-value=1.5e-12  Score=118.29  Aligned_cols=98  Identities=12%  Similarity=0.093  Sum_probs=87.6

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      +.+..+|+.+|+++||+++ |+.++|||.+++++..++.. .+..+..++..+|++..+++++|+++|+||+.++..|..
T Consensus        24 ~~~~~eLa~~A~~~AL~~a-g~~~~dID~vi~g~~~~~~~~g~~~a~~~~~~lGl~~~~p~~~V~~aCaSG~~Al~~A~~  102 (391)
T PRK07661         24 TVRPDDLGALVVKETLKRA-GNYEGPIDDLIIGCAMPEAEQGLNMARNIGALAGLPYTVPAITINRYCSSGLQSIAYGAE  102 (391)
T ss_pred             CCCHHHHHHHHHHHHHHhc-CCChhHCCEEEEEeccccccccchHHHHHHHHcCCCCCcceeehhhhhhHHHHHHHHHHH
Confidence            5688999999999999996 98889999999998776544 367788899999995459999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +.+||++.|++|.
T Consensus       103 ~I~sG~~--d~vLv~G~E~ms~  122 (391)
T PRK07661        103 RIMLGHS--EAVIAGGAESMSL  122 (391)
T ss_pred             HHHcCCC--CEEEEEEEeeccc
Confidence            9999977  9999999999874

>PRK06064 acetyl-CoA acetyltransferase; Provisional

Probab=99.37  E-value=3.5e-12  Score=115.85  Aligned_cols=98  Identities=19%  Similarity=0.177  Sum_probs=87.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ++++..+|+.+|+++||+++ |+++++||.+++++++++..  .+..+..++..||++ ..++++++++|+++..+|..|
T Consensus        18 ~~~~~~eLa~~a~~~Al~da-gl~~~~Id~vi~g~~~~~~~~~~~~~a~~va~~lGl~-~~~~~~v~~aCasg~~ai~~A   95 (389)
T PRK06064         18 WDVSLRDLAVEAGLEALEDA-GIDGKDIDAMYVGNMSAGLFVSQEHIAALIADYAGLA-PIPATRVEAACASGGAALRQA   95 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccccccccccHHHHHHHHcCCC-CCCeeEEeCCcHHHHHHHHHH
Confidence            46789999999999999997 99999999999988766543  367788999999995 688999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +++||+++|.++.
T Consensus        96 ~~~I~sG~~--~~vLv~G~e~~s~  117 (389)
T PRK06064         96 YLAVASGEA--DVVLAAGVEKMTD  117 (389)
T ss_pred             HHHHHCCCC--CEEEEEEEEeccc
Confidence            999999987  9999999998654

>PRK06065 acetyl-CoA acetyltransferase; Provisional

Probab=99.37  E-value=3.7e-12  Score=115.70  Aligned_cols=95  Identities=17%  Similarity=0.152  Sum_probs=83.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ++++..+|+.+|+++||+++ |++++|||.+|+++. ++..  .+..+..+++.||+. +.++++|+++|+++..+|..|
T Consensus        25 ~~~~~~~L~~~A~~~Al~da-gl~~~dID~~i~~~~-~~~~~~~~~~a~~l~~~lG~~-~~~~~~V~~~gasG~~al~~A  101 (392)
T PRK06065         25 LLETPQELAWEAASKALDEA-GLELKDIDCVVIGSA-PDAFDGVHMKGEYLSHGSGGI-RKPVSRVYVGGATGVMTAIAG  101 (392)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecc-CCcccccccHHHHHHHHcCCC-CCCeEEEecCchhHHHHHHHH
Confidence            47889999999999999997 999999999998763 3322  456788899999994 578999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccc
Q psy2407         125 INFILSKVSPGAKALVIATDIS  146 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~  146 (245)
                      ..+|++|.+  ++||||++|++
T Consensus       102 ~~~I~sG~a--d~vLVvg~e~~  121 (392)
T PRK06065        102 WYHVASGLC--QKVLAVAEEKM  121 (392)
T ss_pred             HHHHhCCCC--CEEEEEEeecc
Confidence            999999988  99999999985

>PRK06289 acetyl-CoA acetyltransferase; Provisional

Probab=99.37  E-value=3.1e-12  Score=116.79  Aligned_cols=101  Identities=15%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             eeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCC-----CcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407          42 KSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFG-----KSMSTYIHHYLGLNRNCRLFELKQACYS  116 (245)
Q Consensus        42 r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~-----p~~a~~l~~~LGl~~~~~~~dv~~~C~~  116 (245)
                      |++..++++..+|+.+|+++||+++ |++++|||.+|++++++++..     +.....  ..+++ .++++++++++|++
T Consensus        17 r~~~~~~~s~~eLa~eA~~~AL~dA-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~~~--~~~~~-~g~~~~~v~~~Cas   92 (403)
T PRK06289         17 RNWTKEGRDFADLTREVVDGTLAAA-GVDADDIEVVHVGNFFGELFAGQGHLGAMPAT--VHPAL-WGVPASRHEAACAS   92 (403)
T ss_pred             cccCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccccchHHHH--HhhcC-CCCceeecccccHH
Confidence            3444468999999999999999997 999999999999887665332     222221  22344 24678999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         117 CTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ++.+|..|..+|++|.+  ++|||+++|+++.
T Consensus        93 g~~al~~Aa~~I~sG~~--~~VLvvg~e~~s~  122 (403)
T PRK06289         93 GSVATLAAMADLRAGRY--DVALVVGVELMKT  122 (403)
T ss_pred             HHHHHHHHHHHHHcCCC--CEEEEEEEEecCC
Confidence            99999999999999977  9999999998753

>PRK08963 fadI 3-ketoacyl-CoA thiolase; Reviewed

Probab=99.35  E-value=4.2e-12  Score=116.66  Aligned_cols=100  Identities=14%  Similarity=0.141  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|+++||+++ |+++++||.+++++..+....+.++..++..+|++..++++.|+++|+|++.|+..|..
T Consensus        25 ~~~~~~eL~~~a~~~al~~a-gl~~~~ID~vi~G~~~~~~~~~~~ar~~a~~aGl~~~~P~~tV~~aCaSG~~Ai~~Aa~  103 (428)
T PRK08963         25 HGIPAVDLGKMVVGELLARS-EIDPELIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVSRACATSFQAVANVAE  103 (428)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEeccCCCCCccHHHHHHHHHCCCCCCCcceeehhhhHHHHHHHHHHHH
Confidence            57789999999999999996 99999999999998654333356777899999996569999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +|++|.+  +.+|+++.|++|..
T Consensus       104 ~I~sG~~--dvvLvgG~Esms~~  124 (428)
T PRK08963        104 SIMAGTI--DIGIAGGADSSSVL  124 (428)
T ss_pred             HHHCCCC--CEEEEecccccCCC
Confidence            9999977  99999999999753

>PRK08131 acetyl-CoA acetyltransferase; Provisional

Probab=99.35  E-value=6.5e-12  Score=114.41  Aligned_cols=100  Identities=14%  Similarity=0.056  Sum_probs=88.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+.++.+|+.+|+++||+++ |++++|||.+++++..+... .+.++..++..+|++..++++.|+++|+|++.|+..|.
T Consensus        22 ~~~~~~eL~~~a~~~al~~a-gi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Glp~~~p~~tV~~~CaSG~~Ai~~A~  100 (401)
T PRK08131         22 ASVRPDDLAATVIRRLLEKS-GFPGDDIEDVILGCTNQAGEDSRNVARNALLLAGLPVTVPGQTVNRLCASGLAAVIDAA  100 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccHHHHHHHhcCCCCCCceeeeechhhhHHHHHHHHH
Confidence            36789999999999999996 99999999999998754332 35677788999999657999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEecccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ..|++|.+  +.+|+++.|++|..
T Consensus       101 ~~I~sG~~--dvvlagG~Esms~~  122 (401)
T PRK08131        101 RAITCGEG--DLYLAGGVESMSRA  122 (401)
T ss_pred             HHHHCCCC--CEEEEEEecCCCCC
Confidence            99999977  99999999999754

>PRK07850 acetyl-CoA acetyltransferase; Provisional

Probab=99.34  E-value=7.5e-12  Score=113.56  Aligned_cols=99  Identities=10%  Similarity=0.089  Sum_probs=86.5

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+.++.+|+.+|++++|+++ |+++++||.+++++..+... ....+..+...+|++.+++++.|+++|+|++.|+..|.
T Consensus        22 ~~~~~~eL~~~a~~~aL~~a-gi~~~~Id~v~~G~~~~~~~q~~~~ar~~~l~~Gl~~~~p~~tV~~~CaSG~~A~~~A~  100 (387)
T PRK07850         22 SGLHAAELLGAVQRAVLDRA-GIDPGDVEQVIGGCVTQAGEQSNNITRTAWLHAGLPYHVGATTIDCQCGSAQQANHLVA  100 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccchHHHHHHHhCCCCCCCceEEEecccccHHHHHHHHH
Confidence            36778999999999999996 99999999999987653222 24567788888999657999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +.|++|.+  +.+|+++.|++|.
T Consensus       101 ~~I~sG~~--dvvla~G~E~mS~  121 (387)
T PRK07850        101 GLIAAGAI--DVGIACGVEAMSR  121 (387)
T ss_pred             HHHHCCCC--CEEEEEeEecCCC
Confidence            99999977  9999999999975

>PRK13359 beta-ketoadipyl CoA thiolase; Provisional

Probab=99.34  E-value=8.1e-12  Score=113.70  Aligned_cols=100  Identities=12%  Similarity=0.065  Sum_probs=89.2

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.++.+|+.+|++++|++ + |+++++||.+|+++..+... .+.++..+...+||+.+++++.|++.|+|++.|+..|
T Consensus        22 ~~~~~~~L~~~a~~~al~r~a-~i~~~~Id~vi~G~~~~~~~~g~~~ar~~~l~~Gl~~~vp~~tV~~~CaSG~~Av~~A  100 (400)
T PRK13359         22 SSVRADDLGAVPLKALVERNP-DVDWAAIDDVIYGCANQAGEDNRNVARMSLLLAGLPHGVPGSTINRLCGSGMDAVGVA  100 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEeccchhHHHHHHHH
Confidence            4567899999999999996 5 99999999999998764332 3788999999999976699999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .+.|++|.+  +.+|+++.|++|..
T Consensus       101 ~~~I~sG~~--divlagGvEsmS~~  123 (400)
T PRK13359        101 ARAIKSGEA--ALMIAGGVESMSRA  123 (400)
T ss_pred             HHHHHcCCC--CEEEEeeeeccCCC
Confidence            999999977  99999999999864

>PRK06633 acetyl-CoA acetyltransferase; Provisional

Probab=99.33  E-value=5.4e-12  Score=114.52  Aligned_cols=100  Identities=13%  Similarity=0.132  Sum_probs=88.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ..+.++.+|+.+|++++|+++ |+++++||.+++++..+.......+..++..+|++..+|++.|+++|+|++.++..|.
T Consensus        22 l~~~~~~~L~~~a~~~al~~a-gi~~~~Id~vv~G~~~~~~~g~~~~r~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~A~  100 (392)
T PRK06633         22 LSTTPAPMLAAHLIKDILQNS-KIDPALVNEVILGQVITGGSGQNPARQTLIHAGIPKEVPGYTINKVCGSGLKSVALAA  100 (392)
T ss_pred             cCCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEecCccccccHHHHHHHHHCCCCCCccchhhcchhHHHHHHHHHHH
Confidence            457889999999999999996 9999999999999776443345677888899999656999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  +.+|+++.|++|.
T Consensus       101 ~~I~sG~~--dvvla~G~E~ms~  121 (392)
T PRK06633        101 NSIMTGDN--EIVIAGGQENMSL  121 (392)
T ss_pred             HHHHcCCC--CEEEEcccccCCC
Confidence            99999977  9999999999874

>PRK09050 beta-ketoadipyl CoA thiolase; Validated

Probab=99.33  E-value=9.1e-12  Score=113.46  Aligned_cols=100  Identities=9%  Similarity=0.028  Sum_probs=88.9

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.++.+|+.+|++++|++ + |+++++||.|++++..+... .++.+..++..+|++.++|++.|+++|+|++.|+..|
T Consensus        22 ~~~~~~~L~~~a~~~al~~~a-gi~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~vP~~tV~~aCaSG~~Ai~~A  100 (401)
T PRK09050         22 SSVRADDLGAVPLKALMARNP-GVDWEAVDDVIYGCANQAGEDNRNVARMSALLAGLPVSVPGTTINRLCGSGMDAVGTA  100 (401)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccchHHHHHHHHcCCCCCCceEEEecccccHHHHHHHH
Confidence            4678899999999999994 6 99999999999998764332 3677888999999976799999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .+.|++|.+  +.+|+++.|++|..
T Consensus       101 ~~~I~sG~~--dvvlagGvEsmS~~  123 (401)
T PRK09050        101 ARAIKAGEA--ELMIAGGVESMSRA  123 (401)
T ss_pred             HHHHHCCCC--CEEEEecccccccC
Confidence            999999977  99999999999864

>TIGR02446 FadI fatty oxidation complex, beta subunit FadI

Probab=99.32  E-value=8.5e-12  Score=114.56  Aligned_cols=99  Identities=14%  Similarity=0.123  Sum_probs=86.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|+++||+++ |+++++||.+|+++..+....+.++..+.-..|++..+|++.|+++|+|++.|+..|..
T Consensus        27 ~~~~~~~L~~~a~~~al~~a-gl~~~~Id~vi~G~~~~~~~~~~~ar~~~l~aGl~~~~p~~~V~~~CaSG~~A~~~a~~  105 (430)
T TIGR02446        27 HGIPAVDLGKMVVSELLARS-EIDPKLIEQLVFGQVVQMPEAPNIAREIVLGTGMNVHTDAYSVTRACATSFQSAVNVAE  105 (430)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCcCccchHHHHHHHhCCCCCCCchhhhhhhhhHHHHHHHHHHH
Confidence            46788999999999999996 99999999999998765333355666777778996579999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +.+|+++.|++|.
T Consensus       106 ~I~sG~~--dvvla~G~E~mS~  125 (430)
T TIGR02446       106 SIMAGAI--DIGIAGGADSSSV  125 (430)
T ss_pred             HHHCCCC--CEEEEeeeEcccC
Confidence            9999987  9999999999985

This subunit of the FadJI complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit, and YfcY. This protein is almost always located adjacent to FadJ (TIGR02440). The FadJI complex is needed for anaerobic beta-oxidation of short-chain fatty acids in E. coli.

>PRK06445 acetyl-CoA acetyltransferase; Provisional

Probab=99.32  E-value=8.5e-12  Score=113.55  Aligned_cols=99  Identities=14%  Similarity=0.061  Sum_probs=81.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC-cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK-SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+.+..+|+.+|+++||+++ |++++|||.+++++..++...| ..+....-..+++.++++++|+++|+|++.++..|.
T Consensus        28 ~~~~~~~L~~~a~~~AL~~a-gl~~~dID~vi~g~~~~~~~~~~~~~~~~~l~a~~~~~~p~~~V~~~CaSg~~ai~~A~  106 (394)
T PRK06445         28 NNIRPEELAAMLINRLIEKT-GIKPEEIDDIITGCALQVGENWLYGGRHPIFLARLPYNIPAMAVDRQCASSLTTVSIGA  106 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCeeEEEeecCCCcccccHHHHHHHHcCCCCCCcchhhhhhhHHHHHHHHHHH
Confidence            36789999999999999997 9999999999999887754322 223332223334346899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  +++||++.|+++.
T Consensus       107 ~~I~sG~~--d~vLv~G~e~ms~  127 (394)
T PRK06445        107 MEIATGMA--DIVIAGGVEHMTR  127 (394)
T ss_pred             HHHHcCCC--CEEEEeeeccccc
Confidence            99999987  9999999998763

>PRK07516 acetyl-CoA acetyltransferase; Provisional

Probab=99.31  E-value=1.4e-11  Score=112.04  Aligned_cols=98  Identities=15%  Similarity=0.080  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+++..+|+.+|+++||+++ |++++|||.|++++..+...  .+..+..+...+|+ ..+++++++++|+|++.+|..|
T Consensus        18 ~~~~~~eL~~eA~~~AL~dA-gl~~~dId~vi~g~~~~~~~~~~~~~~~~~~~~~gl-~~~p~~~v~~~CaSg~~Al~~A   95 (389)
T PRK07516         18 DAETLESLIVRVAREALAHA-GIAAGDVDGIFLGHFNAGFSPQDFPASLVLQADPAL-RFKPATRVENACATGSAAVYAA   95 (389)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEecCCccccccchhHHHHHhcCC-CCCceeeeccccHHHHHHHHHH
Confidence            46888999999999999997 99999999999987643221  11122334456787 4788999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +++||+++|+++.
T Consensus        96 ~~~I~sG~~--d~vLvvg~e~~s~  117 (389)
T PRK07516         96 LDAIEAGRA--RIVLVVGAEKMTA  117 (389)
T ss_pred             HHHHHCCCC--CEEEEEEehhhcc
Confidence            999999987  9999999999753

>PRK07851 acetyl-CoA acetyltransferase; Provisional

Probab=99.30  E-value=1.7e-11  Score=112.02  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=85.9

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.+..+|+.+|+++||++ + |++++|||.+++++..+... .+..+..++..+|+ ..++++.++++|+++..++..|
T Consensus        23 ~~~~~~eL~~~A~~~AL~da~-gl~~~dID~vv~g~~~~~~~~g~~~~~~~a~~lGl-~~~p~~~v~~~caSG~~av~~A  100 (406)
T PRK07851         23 KDMRPDDLAAQMVRAALDKVP-ALDPTDIDDLMLGCGLPGGEQGFNMARVVAVLLGY-DFLPGTTVNRYCSSSLQTTRMA  100 (406)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEcccccccccCCHHHHHHHHcCC-CCCCeeeeeccchhHHHHHHHH
Confidence            4678899999999999999 4 99999999999876543222 35667889999999 4689999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ..+|++|.+  +.+||++.|+++..
T Consensus       101 a~~I~sG~~--d~vLv~G~e~~s~~  123 (406)
T PRK07851        101 FHAIKAGEG--DVFISAGVETVSRF  123 (406)
T ss_pred             HHHHHCCCC--CEEEEeeEEecccC
Confidence            999999987  99999999998653

>PRK06366 acetyl-CoA acetyltransferase; Provisional

Probab=99.30  E-value=1.6e-11  Score=111.53  Aligned_cols=98  Identities=12%  Similarity=0.077  Sum_probs=85.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +.+..+|+.+|+++||+++ |++++|||.+++++..+....+..+..++..+|++.+++++.++++|+|++.++..|...
T Consensus        23 ~~~~~~L~~~a~~~al~da-gi~~~dID~vi~g~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~~  101 (388)
T PRK06366         23 KIKAPQLGGAAIKAVIDDA-KLDPALVQEVIMGNVIQAGVGQNPAGQAAYHAGLPFGVTKYTVNVVCASGMLAVESAARE  101 (388)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCCCccCcHHHHHHHHCCCCCCCcceeeechhhHHHHHHHHHHHH
Confidence            5788999999999999997 999999999999876543223355778899999965689999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++|.+  +.+|+++.|+++.
T Consensus       102 I~sG~~--d~vla~G~e~ms~  120 (388)
T PRK06366        102 IMLGER--DLVIAGGMENMSN  120 (388)
T ss_pred             HhcCCC--CEEEEEeeEcccc
Confidence            999977  9999988898774

>TIGR02430 pcaF beta-ketoadipyl CoA thiolase

Probab=99.30  E-value=1.6e-11  Score=111.82  Aligned_cols=100  Identities=13%  Similarity=0.062  Sum_probs=88.4

Q ss_pred             CCCCHHHHHHHHHHHHHH-hcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLID-NLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~-~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.++.+|+.+|++++|+ ++ |+++++||.+++++..+... .+..+..++..+|++.++|++.|+++|+|++.|+..|
T Consensus        21 ~~~~~~~L~~~a~~~al~~~a-~i~~~~Id~v~~G~~~~~~~~~~~~ar~~~~~~Gl~~~~p~~~V~~~CaSG~~Ai~~a   99 (400)
T TIGR02430        21 SSVRADDLAAVPIKALLARNP-QLDWAAIDDVIYGCANQAGEDNRNVARMAALLAGLPVSVPGTTVNRLCGSGLDAIGMA   99 (400)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEeechhhhHHHHHHHH
Confidence            467889999999999999 45 99999999999997754222 3678888999999965799999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ...|++|.+  +.+|+++.|++|..
T Consensus       100 ~~~I~sG~~--d~~la~G~E~ms~~  122 (400)
T TIGR02430       100 ARAIKAGEA--DLLIAGGVESMSRA  122 (400)
T ss_pred             HHHHHCCCC--CEEEEeccccccCC
Confidence            999999977  99999999999864

Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.

>PRK06504 acetyl-CoA acetyltransferase; Provisional

Probab=99.29  E-value=2.4e-11  Score=110.34  Aligned_cols=100  Identities=15%  Similarity=0.119  Sum_probs=85.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+.++.+|+.+|+++||+++ |++++|||.+|+++..+... .+..+..+.-..||+.++|++.|+++|+|++.|+..|.
T Consensus        22 ~~~~~~~L~~~a~~~al~~a-~l~~~~Id~vi~G~~~~~~~~~~~~ar~~~l~~gl~~~vP~~tV~~~CaSG~~Ai~~A~  100 (390)
T PRK06504         22 AGWHPADLAAQVLDALVDRS-GADPALIEDVIMGCVSQVGEQATNVARNAVLASKLPESVPGTSIDRQCGSSQQALHFAA  100 (390)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCCCceEEEechhhHHHHHHHHHH
Confidence            47789999999999999996 99999999999987763222 24566655555688667999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEecccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +.|++|.+  +.+|+++.|++|..
T Consensus       101 ~~I~sG~~--dvvLagGvEsmS~~  122 (390)
T PRK06504        101 QAVMSGTM--DIVIAAGVESMTRV  122 (390)
T ss_pred             HHHHCCCC--CEEEEeeeeecCCC
Confidence            99999987  99999999999753

>PLN02644 acetyl-CoA C-acetyltransferase

Probab=99.29  E-value=2.6e-11  Score=110.30  Aligned_cols=98  Identities=9%  Similarity=0.077  Sum_probs=84.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|+++||+++ |++++|||.+++++.......+..+..++..+|++.+.+++.++++|++++.++..|.+
T Consensus        21 ~~~~~~~L~~~a~~~al~dA-gl~~~~ID~vv~g~~~~~~~~~~~~~~~~~~~Gl~~~~p~~~v~~~caSg~~av~~Aa~   99 (394)
T PLN02644         21 SSLSATELGSIAIQAALERA-GVDPALVQEVFFGNVLSANLGQAPARQAALGAGLPPSTICTTVNKVCASGMKAVMLAAQ   99 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCcCCcCCcHHHHHHHhcCCCCCCceEEEeccchHHHHHHHHHHH
Confidence            35788999999999999997 99999999999876543222334566788999996568899999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccc
Q psy2407         127 FILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s  147 (245)
                      +|++|.+  +.+||++.|++|
T Consensus       100 ~I~sG~~--d~vlv~G~E~~s  118 (394)
T PLN02644        100 SIQLGIN--DVVVAGGMESMS  118 (394)
T ss_pred             HHHcCCC--CEEEEEeEEecC
Confidence            9999977  999999999886

>cd00833 PKS polyketide synthases (PKSs) polymerize simple fatty acids into a large variety of different products, called polyketides, by successive decarboxylating Claisen condensations

Probab=99.28  E-value=5e-11  Score=108.90  Aligned_cols=122  Identities=14%  Similarity=0.115  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCC-------------------CCCcHHHHHHHHcCCCCCcce
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGID-------------------FGKSMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~-------------------~~p~~a~~l~~~LGl~~~~~~  107 (245)
                      ...|+.+|+++||+++ |+++++++.    +++++..+++                   ..+..+..++..+|++  .++
T Consensus        87 ~~~l~~~aa~~AL~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~--g~~  163 (421)
T cd00833          87 QQRLLLEVAWEALEDA-GYSPESLAGSRTGVFVGASSSDYLELLARDPDEIDAYAATGTSRAFLANRISYFFDLR--GPS  163 (421)
T ss_pred             HHHHHHHHHHHHHHHc-CCCchhcCCCCceEEeCcCHHHHHHHHhhcccccCcccccCcchHHHHHHHHHHcCCC--CCc
Confidence            4789999999999997 999888774    6666654321                   1134677899999994  488


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcccccccccc--cccccccceeEE
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWA--FFEPSGGAGAVA  174 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~--~~~~~~GDGAaA  174 (245)
                      +.+..+|++++.||..|..+|++|.+  +.+||+++|.....           +.+..  ...++.  ....++||||+|
T Consensus       164 ~~v~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~--~~~pf~~~~~g~~~geGAaa  239 (421)
T cd00833         164 LTVDTACSSSLVALHLACQSLRSGEC--DLALVGGVNLILSPDMFVGFSKAGMLSPDG--RCRPFDADADGYVRGEGVGV  239 (421)
T ss_pred             eeeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeeeeccCCHHHHHHHhhCCCCCCCC--CCCCCCCCCCCeeeeceEEE
Confidence            99999999999999999999999977  99999999986321           00000  011111  013579999999


Q ss_pred             EEecC
Q psy2407         175 MLISD  179 (245)
Q Consensus       175 ~ll~~  179 (245)
                      +||++
T Consensus       240 lvL~~  244 (421)
T cd00833         240 VVLKR  244 (421)
T ss_pred             EEEee
Confidence            99986

PKSs can be divided into 2 groups, modular type I PKSs consisting of one or more large multifunctional proteins and iterative type II PKSs, complexes of several monofunctional subunits.

>PTZ00455 3-ketoacyl-CoA thiolase; Provisional

Probab=99.26  E-value=4.1e-11  Score=110.26  Aligned_cols=99  Identities=16%  Similarity=0.154  Sum_probs=84.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCC--cCEEEEEeccCCC--CCCcHHHHHHHHcCCC------CCcceeeecCcchh
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNS--IELIITCSESGID--FGKSMSTYIHHYLGLN------RNCRLFELKQACYS  116 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~d--Id~li~~t~~~~~--~~p~~a~~l~~~LGl~------~~~~~~dv~~~C~~  116 (245)
                      .+.+..+|+.+|+++||+++ |++++|  ||.+++++..+..  ..+.++..++..+|++      ..++++.|+++|+|
T Consensus        44 ~~~s~~eL~~~a~~~al~~a-gl~~~d~~ID~vi~G~~~~~~~~~~~~~a~~~~~~~gl~~~~~gl~~~p~~~V~~~caS  122 (438)
T PTZ00455         44 ENKTLEELLATAIQGTLENT-GLDGKAALVDKVVVGNFLGELFSSQGHLGPAAVGSLGQSGASNALLYKPAMRVEGACAS  122 (438)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCcCEEEEEeccccccccccchHHHHHHhccCcccccccCCCceeEEECcCHH
Confidence            46788999999999999997 999999  9999998764322  2356677777666554      46899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         117 CTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ++.++..|..+|++|.+  +.+||++.|+++.
T Consensus       123 G~~Ai~~A~~~I~sG~~--dvvlv~G~E~ms~  152 (438)
T PTZ00455        123 GGLAVQSAWEALLAGTS--DIALVVGVEVQTT  152 (438)
T ss_pred             HHHHHHHHHHHHHCCCC--CEEEEEEEeeccc
Confidence            99999999999999987  9999999998754

>PRK06157 acetyl-CoA acetyltransferase; Validated

Probab=99.25  E-value=4.2e-11  Score=109.14  Aligned_cols=98  Identities=12%  Similarity=0.064  Sum_probs=83.3

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|+++||+++ |++++|||.+++++...++........+++.||++ ..+++.++++|++++.++..|..
T Consensus        23 ~~~~~~~L~~ea~~~AL~da-gl~~~dID~v~vg~~~~~~~~~~~~~~~a~~lGl~-~~~~~~v~~~c~sg~~ai~~A~~  100 (398)
T PRK06157         23 WDAGAEDLMVEAFLEALADA-GIEPKDIDAAWFGTHYDEIGSGKSGTPLSRALRLP-NIPVTRVENFCATGSEAFRGAVY  100 (398)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccchhHHHHHHcCCC-CCCEEEEecccHHHHHHHHHHHH
Confidence            46778999999999999997 99999999999887644222222346788899995 58889999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .|++|.+  +.+||+++|+++.
T Consensus       101 ~I~sG~~--d~vlv~G~e~~s~  120 (398)
T PRK06157        101 AVASGAY--DIALALGVEKLKD  120 (398)
T ss_pred             HHHCCCC--CEEEEEEEeeccc
Confidence            9999977  9999999998754

>PRK06158 thiolase; Provisional

Probab=99.25  E-value=3.2e-11  Score=109.43  Aligned_cols=92  Identities=16%  Similarity=0.103  Sum_probs=78.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      ++++..+|+.+|+++||+++ |++++|||.+++++..  +..|  ...+++.||++ ..++++++.+|+++..+|..|..
T Consensus        24 ~~~t~~eL~~eA~~~Al~dA-gl~~~dID~iv~~~~~--~~~~--~~~la~~lGl~-~~~~~~~~~g~~s~~~al~~A~~   97 (384)
T PRK06158         24 PGLSAMELLAQAAHRALADA-GLTMADVDGLFTASPD--DALW--GLSVAEYLGIR-PRFVDGTMIGGSSFLAHLLPAAL   97 (384)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecCC--CCCc--HHHHHHHcCCC-CeeeccccCccHHHHHHHHHHHH
Confidence            57899999999999999997 9999999999987643  3334  35799999994 67888999999999999999999


Q ss_pred             HHhcCCCCCCeEEEE-Eeccc
Q psy2407         127 FILSKVSPGAKALVI-ATDIS  146 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv-~~e~~  146 (245)
                      +|++|.+  ++|||+ +.++.
T Consensus        98 ~I~sG~~--d~vLV~~g~~~~  116 (384)
T PRK06158         98 ALEAGLC--DVALICYGSNQR  116 (384)
T ss_pred             HHHcCCC--CEEEEeeccccc
Confidence            9999987  999998 44443

>PRK06501 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.25  E-value=2.6e-10  Score=104.84  Aligned_cols=169  Identities=15%  Similarity=0.066  Sum_probs=105.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HH-----Hh-hc-cceeeeecC-----CCCCHHHHHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VR-----FE-NL-LMQQKSVSL-----PYEDPVSFAINAAAPLI   63 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~-----~~-~~-Gi~~r~~~~-----~~e~~~~la~~Aa~~aL   63 (245)
                      |+|.|.|+|...|--. +.+++.+.+  |.+   + ..     +. +. |...  +..     .......|+..|+++||
T Consensus        11 ~~VvITG~G~vs~~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~aa~~Al   87 (425)
T PRK06501         11 PIVAVTGMGVVTSLGQ-GKADNWAALTAGESGIHTITRFPTEGLRTRIAGTVD--FLPESPFGASALSEALARLAAEEAL   87 (425)
T ss_pred             cCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceEcCCcccccCCCCceEEEEe--ecccccccccCHHHHHHHHHHHHHH
Confidence            3599999999999864 556555432  211   0 00     10 11 1100  100     01124568899999999


Q ss_pred             HhcCCCCcCCcC------------------EEEEEec---------------cCCC-------CCCcHHHHHHHHcCCCC
Q psy2407          64 DNLSNIDKNSIE------------------LIITCSE---------------SGID-------FGKSMSTYIHHYLGLNR  103 (245)
Q Consensus        64 ~~a~g~~~~dId------------------~li~~t~---------------~~~~-------~~p~~a~~l~~~LGl~~  103 (245)
                      +++ |++..+++                  .++.++.               .+..       ..|+.+..|+..+|++ 
T Consensus        88 ~dA-gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~~~gl~-  165 (425)
T PRK06501         88 AQA-GIGKGDFPGPLFLAAPPVELEWPARFALAAAVGDNDAPSYDRLLRAARGGRFDALHERFQFGSIADRLADRFGTR-  165 (425)
T ss_pred             HHc-CCCccccccceeeccccccCCCCceEEEEEecCCccHHHHHHHHhhcCcccCChhhhhhcccHHHHHHHHHhCCC-
Confidence            997 98644322                  1112111               1111       3456788999999993 


Q ss_pred             CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecc---------------ccccccCccccccccccc--ccc
Q psy2407         104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI---------------SRFFVTEDKNELTMEWAF--FEP  166 (245)
Q Consensus       104 ~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~---------------~s~~~~~~~~~~~~~~~~--~~~  166 (245)
                       .++++++.+|+|++.||..|..+|++|.+  +.+||+++|.               .+...++.+ .+..++..  ...
T Consensus       166 -G~~~~i~~aCaS~~~Al~~A~~~I~~G~~--d~vlvgG~d~~~~~~~~~~~~~~~~ls~~~~~~~-~~~rpfd~~r~G~  241 (425)
T PRK06501        166 -GLPISLSTACASGATAIQLGVEAIRRGET--DRALCIATDGSVSAEALIRFSLLSALSTQNDPPE-KASKPFSKDRDGF  241 (425)
T ss_pred             -CCceeecCccHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHhhccccCCCCCC-cccCCCCCCCCCe
Confidence             57899999999999999999999999977  9999999994               222111100 01111111  136


Q ss_pred             cccceeEEEEecC
Q psy2407         167 SGGAGAVAMLISD  179 (245)
Q Consensus       167 ~~GDGAaA~ll~~  179 (245)
                      ++||||+++||++
T Consensus       242 v~GEGaaalVLe~  254 (425)
T PRK06501        242 VMAEGAGALVLES  254 (425)
T ss_pred             eeeccEEEEEECc
Confidence            7999999999986

>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.22  E-value=1.2e-09  Score=99.95  Aligned_cols=173  Identities=12%  Similarity=0.052  Sum_probs=111.0

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHh------h-cc-cee---eeecCC-----CCCHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFE------N-LL-MQQ---KSVSLP-----YEDPVSFAINA   58 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~------~-~G-i~~---r~~~~~-----~e~~~~la~~A   58 (245)
                      |+.|.|.|+|...|--. +.+++.+.+  |.+   + .++.      . .| +..   ..+..+     -.....|+.+|
T Consensus         1 m~~v~ItG~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~a   79 (411)
T PRK07314          1 KRRVVVTGLGAVSPLGN-DVESTWKNLLAGKSGIGPITHFDTSDLAVKIAGEVKDFNPDDYMSRKEARRMDRFIQYGIAA   79 (411)
T ss_pred             CCcEEEEcceEECCCcC-CHHHHHHHHHhCCCcEEECCcccccCCCccEEEEeCCcChhhcCCHHHhhcCCHHHHHHHHH
Confidence            78899999999999864 566655432  111   0 0000      0 01 100   000000     02346799999


Q ss_pred             HHHHHHhcCCCCcCCcC----EEEEEeccCC---------------------C----CC-CcHHHHHHHHcCCCCCccee
Q psy2407          59 AAPLIDNLSNIDKNSIE----LIITCSESGI---------------------D----FG-KSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        59 a~~aL~~a~g~~~~dId----~li~~t~~~~---------------------~----~~-p~~a~~l~~~LGl~~~~~~~  108 (245)
                      +++||+++ |++++++|    .+++++....                     .    .. ...+.++...+|+.  -+.+
T Consensus        80 a~~Al~dA-Gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~--Gp~~  156 (411)
T PRK07314         80 AKQAVEDA-GLEITEENADRIGVIIGSGIGGLETIEEQHITLLEKGPRRVSPFFVPMAIINMAAGHVSIRYGAK--GPNH  156 (411)
T ss_pred             HHHHHHHc-CCCcccCCcccEEEEEecCcCChHHHHHHHHHHHhcCccccChhhhhhhcchHHHHHHHHHhCCC--Cccc
Confidence            99999997 99998888    4666654221                     0    11 12456788999994  4778


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-------------Ccccc-ccccccc--cccccccee
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-------------EDKNE-LTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-------------~~~~~-~~~~~~~--~~~~~GDGA  172 (245)
                      .+..+|+|++.+|..|..+|++|.+  +.+||.++|.......             ..++. ...++..  ...+.||||
T Consensus       157 tv~~acaSgl~Al~~A~~~I~~G~~--d~vlvgg~~~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dG~~~geGA  234 (411)
T PRK07314        157 SIVTACATGAHAIGDAARLIAYGDA--DVMVAGGAEAAITPLGIAGFAAARALSTRNDDPERASRPFDKDRDGFVMGEGA  234 (411)
T ss_pred             cchhhhHHHHHHHHHHHHHHhcCCC--CEEEEeeecccCCHHHHHHHHHhccccCCCCCCCcCcCCCcCCCCCEeEEceE
Confidence            8889999999999999999999977  9999999997532110             00000 0111111  135689999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +++||++
T Consensus       235 aavvL~~  241 (411)
T PRK07314        235 GILVLEE  241 (411)
T ss_pred             EEEEEee
Confidence            9999986

>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed

Probab=99.21  E-value=7.9e-11  Score=106.93  Aligned_cols=99  Identities=13%  Similarity=0.090  Sum_probs=86.4

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.+..+|+.+++++||++ + |+++++||.+++++..+... .+..+..+...+|++..++++.|+++|+|++.++..|
T Consensus        23 ~~~~~~~L~~~~~~~al~~~a-gl~~~~Id~vi~g~~~~~~~~g~~~ar~~~~~~Gl~~~~p~~~V~~~caSG~~Ai~~A  101 (387)
T PRK08947         23 RNVRAEDLSAHLMRSLLARNP-ALDPAEIDDIIWGCVQQTLEQGFNIARNAALLAGIPHSVPAVTVNRLCGSSMQALHDA  101 (387)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CcChHHhCeEEEEeccccccccccHHHHHHHHcCCCCCCcceeeechhHHHHHHHHHH
Confidence            4677899999999999995 6 99999999999997653222 2556778889999965699999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +.+|+++.|++|.
T Consensus       102 ~~~I~sG~~--d~vlv~G~E~ms~  123 (387)
T PRK08947        102 ARAIMTGDG--DVFLIGGVEHMGH  123 (387)
T ss_pred             HHHHHCCCC--CEEEEcccccccc
Confidence            999999977  9999999999875

>PRK09268 acetyl-CoA acetyltransferase; Provisional

Probab=99.19  E-value=1.4e-10  Score=106.44  Aligned_cols=100  Identities=11%  Similarity=0.051  Sum_probs=85.2

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.+..+|+.+|++++|+++ |++++|||.+++++..+....+..+..+.-..|++...+++.|+++|++++.++..|..
T Consensus        27 ~~~~~~eL~~~a~~~al~~a-gl~~~~Id~vv~G~~~~~~~~~~~~r~~~l~~gl~~~~p~~~V~~~CaSG~~ai~~A~~  105 (427)
T PRK09268         27 ADASNQDMLTAALDGLVDRF-GLQGERLGEVVAGAVLKHSRDFNLTRECVLGSALSPYTPAYDLQQACGTGLEAAILVAN  105 (427)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccCCccccHHHHHHHHcCCCCCCceeeeechhhHHHHHHHHHHH
Confidence            46789999999999999996 99999999999997654222245677766666775568999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +|++|.+  +.+|+++.|++|..
T Consensus       106 ~I~sG~~--d~vlvgG~E~ms~~  126 (427)
T PRK09268        106 KIALGQI--DSGIAGGVDTTSDA  126 (427)
T ss_pred             HHHCCCC--CEEEEeeEEccCCC
Confidence            9999977  99999999999854

>TIGR02445 fadA fatty oxidation complex, beta subunit FadA

Probab=99.17  E-value=1.2e-10  Score=105.68  Aligned_cols=100  Identities=12%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+.++.+|+.+|++++|++ + |+++++||.+++++..+... .+.++..+....|++..++++.|+++|+|++.++..|
T Consensus        21 ~~~~~~~L~~~a~~~al~~~a-gl~~~~Id~v~~G~~~~~~~~g~~~ar~~~~~~g~~~~~p~~tV~~~CaSG~~Ai~~A   99 (385)
T TIGR02445        21 RNTRAEDLSAHLMSKLLARNP-KVDPAEVEDIYWGCVQQTLEQGFNIARNAALLAQIPHTSAAVTVNRLCGSSMQALHDA   99 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhcc-CCCHHHcCEEEEecccccccccchHHHHHHHHCCCCCCcchhhhhhhhHHHHHHHHHH
Confidence            4678899999999999995 5 99999999999997653221 2456777777889976699999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ...|++|.+  +.+|+++.|++|..
T Consensus       100 a~~I~sG~~--d~vlagG~E~ms~~  122 (385)
T TIGR02445       100 ARAIMTGDA--DVCLVGGVEHMGHV  122 (385)
T ss_pred             HHHHHCCCC--CEEEEeeehhcccC
Confidence            999999977  99999999998753

This subunit of the FadBA complex has acetyl-CoA C-acyltransferase (EC 2.3.1.16) activity, and is also known as beta-ketothiolase and fatty oxidation complex, beta subunit. This protein is almost always located adjacent to FadB (TIGR02437). The FadBA complex is the major complex active for beta-oxidation of fatty acids in E. coli.

>PRK08256 lipid-transfer protein; Provisional

Probab=99.17  E-value=1.7e-10  Score=105.02  Aligned_cols=93  Identities=14%  Similarity=0.142  Sum_probs=80.3

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +.+..+|+.+|+++||+++ |++++|||.+++++..++...   ...++..+|+ .++++++++.+|+|++.++..|..+
T Consensus        19 ~~~~~~La~~A~~~Al~dA-Gl~~~dID~~~~g~~~~~~~~---~~~~~~~lGl-~~~~~~~v~~~caSg~~ai~~A~~~   93 (391)
T PRK08256         19 SWDYPDMAAEAGRAALADA-GIDYDAVQQAYVGYVYGDSTS---GQRALYEVGM-TGIPIVNVNNNCSTGSTALFLARQA   93 (391)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCChHHCCeeEEEEEeCCcch---hHHHHHHcCC-CCCCCcccccccHHHHHHHHHHHHH
Confidence            5778999999999999997 999999999998876653322   2346778999 4678899999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEecccc
Q psy2407         128 ILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s  147 (245)
                      |++|.+  +++||++.|+++
T Consensus        94 I~sG~~--d~vLv~g~e~~s  111 (391)
T PRK08256         94 VRSGAA--DCALALGFEQMQ  111 (391)
T ss_pred             HHCCCC--CEEEEEEEeecc
Confidence            999987  999999999875

>cd00828 elong_cond_enzymes "elongating" condensing enzymes are a subclass of decarboxylating condensing enzymes, including beta-ketoacyl [ACP] synthase, type I and II and polyketide synthases

Probab=99.15  E-value=1.1e-09  Score=99.91  Aligned_cols=127  Identities=13%  Similarity=0.100  Sum_probs=89.4

Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcCC-cC----EEEEEeccCC----------------------CCC--CcHHHHHHHHc
Q psy2407          49 EDPVSFAINAAAPLIDNLSNIDKNS-IE----LIITCSESGI----------------------DFG--KSMSTYIHHYL   99 (245)
Q Consensus        49 e~~~~la~~Aa~~aL~~a~g~~~~d-Id----~li~~t~~~~----------------------~~~--p~~a~~l~~~L   99 (245)
                      .....|+..|+++||+++ |+++++ ++    .+++++..+.                      ...  ...+..|+..+
T Consensus        70 ~~~~~l~~~aa~~Al~dA-Gl~~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~  148 (407)
T cd00828          70 DRTTLLALVATEEALADA-GITDPYEVHPSEVGVVVGSGMGGLRFLRRGGKLDARAVNPYVSPKWMLSPNTVAGWVNILL  148 (407)
T ss_pred             CHHHHHHHHHHHHHHHhC-CCCccccCCccCeEEEEeeccCCHHHHHHHHHHHhhccCCcccchhccccchHHHHHHHHh
Confidence            345689999999999997 998765 33    3444543211                      111  45678899999


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc----------ccCcc--c-cccccccc--c
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF----------VTEDK--N-ELTMEWAF--F  164 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~----------~~~~~--~-~~~~~~~~--~  164 (245)
                      |+. +-+.+.+..+|+|++.||..|..+|++|.+  +.+||+++|..+..          +....  + ....++..  .
T Consensus       149 gl~-~Gp~~tv~~aCaS~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~~~~~~pfd~~~~  225 (407)
T cd00828         149 LSS-HGPIKTPVGACATALEALDLAVEAIRSGKA--DIVVVGGVEDPLEEGLSGFANMGALSTAEEEPEEMSRPFDETRD  225 (407)
T ss_pred             CcC-CCCCcCcccHHHHHHHHHHHHHHHHHcCCC--CEEEEccccccChHHHHHHHHcCCCCCCCCCCCcccCCCcCCCC
Confidence            993 457899999999999999999999999977  99999999987510          00000  0 01111111  1


Q ss_pred             cccccceeEEEEecC
Q psy2407         165 EPSGGAGAVAMLISD  179 (245)
Q Consensus       165 ~~~~GDGAaA~ll~~  179 (245)
                      ..++||||+++||++
T Consensus       226 G~~~gEGAaalvLe~  240 (407)
T cd00828         226 GFVEAEGAGVLVLER  240 (407)
T ss_pred             cEEeecceEEEEEee
Confidence            357999999999986

They are characterized by the utlization of acyl carrier protein (ACP) thioesters as primer substrates, as well as the nature of their active site residues.

>PRK06365 acetyl-CoA acetyltransferase; Provisional

Probab=99.15  E-value=2.5e-10  Score=104.93  Aligned_cols=98  Identities=14%  Similarity=0.051  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHH-HHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMS-TYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a-~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ++.+..+|+.+|+++||+++ |++++|||.+++++..........+ ..++..||++ ..+++.++++|+|+..++..|.
T Consensus        33 ~~~~~~eL~~eA~~~Al~da-gl~~~dID~vv~~~~~~~~~g~~~~~~~~~~~lGl~-~~~~~~v~~~~aSg~~ai~~A~  110 (430)
T PRK06365         33 PYMDFRERVKKAFDYAMNDA-GLTLADIDGSVASYFSDHFQRQLLAGIMVQDYLGLV-PKPSKRIEGGGATGGLAFQAGY  110 (430)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEecccccccccchhhHHHHHhcCCC-CCceEEEeCCcHHHHHHHHHHH
Confidence            35677899999999999997 9999999998876543222222333 3467999995 5899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..|++|.+  +.|||++.|+++.
T Consensus       111 ~~I~sG~~--~~vLv~G~e~~s~  131 (430)
T PRK06365        111 EEIASGRM--DCVAVYGFETMSH  131 (430)
T ss_pred             HHHHcCCC--CEEEEEEeeeccc
Confidence            99999977  9999999998754

>PRK06025 acetyl-CoA acetyltransferase; Provisional

Probab=99.15  E-value=3.5e-10  Score=103.01  Aligned_cols=102  Identities=15%  Similarity=0.185  Sum_probs=92.6

Q ss_pred             cCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHH
Q psy2407          45 SLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM  123 (245)
Q Consensus        45 ~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~  123 (245)
                      ...+.++.+|+..+++.+|++. ++++++||.||+++..+... .+++++.++-..||+..++++.|+..|+|++.++.+
T Consensus        23 ~l~~~~~~~L~~~~~~~~l~r~-~i~~~~id~vi~G~~~~~g~~g~n~aR~~al~aglp~~vp~~tvnr~C~Sgl~ai~~  101 (417)
T PRK06025         23 ALAHLHPQHLAATVLKALAERN-GLNTADVDDIIWSTSSQRGKQGGDLGRMAALDAGYDIKASGVTLDRFCGGGITSVNL  101 (417)
T ss_pred             cCCCCCHHHHHHHHHHHHHHhc-CCCHHHCCEEEEEcCCCcCcccCcHHHHHHHhCCCCCCCCeeeeccccchHHHHHHH
Confidence            3457899999999999999996 99999999999998866433 478999999999998889999999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         124 AINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |...|++|..  +.+|+.+.|.+|..
T Consensus       102 aa~~I~~G~~--~~~laGG~EsmS~~  125 (417)
T PRK06025        102 AAAQIMSGME--DLVIAGGTEMMSYT  125 (417)
T ss_pred             HHHHHHcCCC--CEEEEeeeeccCCC
Confidence            9999999976  99999999999864

>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II

Probab=99.11  E-value=2e-09  Score=98.12  Aligned_cols=124  Identities=15%  Similarity=0.138  Sum_probs=88.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCC---------------------C----C-CcHHHHHHHHcC
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGID---------------------F----G-KSMSTYIHHYLG  100 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~---------------------~----~-p~~a~~l~~~LG  100 (245)
                      ...|+.+|+++||+++ |+++++||.    +++++..+..                     .    . ...+..+...+|
T Consensus        71 ~~~l~~~aa~~Al~dA-gl~~~~~~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g  149 (407)
T TIGR03150        71 FIQYALAAAKEAVEDS-GLDIEEEDAERVGVIIGSGIGGLETIEEQHIVLLEKGPRRVSPFFIPMSIINMAAGQISIRYG  149 (407)
T ss_pred             HHHHHHHHHHHHHHhc-CCCcccCCccceEEEEecCCCchHHHHHHHHHHHhcCccccChhhhhcccccHHHHHHHHHhC
Confidence            3679999999999997 999998886    6666532210                     0    1 124567888899


Q ss_pred             CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c-Ccc-cc-ccccccc--c
Q psy2407         101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T-EDK-NE-LTMEWAF--F  164 (245)
Q Consensus       101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~-~~~-~~-~~~~~~~--~  164 (245)
                      +.  .+.+.+..+|+|++.||..|..+|++|.+  +.+||+++|......           . ..+ +. ...++..  .
T Consensus       150 l~--g~~~~v~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~  225 (407)
T TIGR03150       150 AK--GPNHAVVTACATGTHAIGDAFRLIQRGDA--DVMIAGGAEAAITPLGIAGFAAMKALSTRNDDPEKASRPFDKDRD  225 (407)
T ss_pred             CC--CcccccccHHHHHHHHHHHHHHHHhcCCC--CEEEEecccCcCCHHHHHHHHHhCcccCCCCCCCcCCCCCcCCCC
Confidence            83  57788999999999999999999999977  999999999743210           0 000 00 0111111  1


Q ss_pred             cccccceeEEEEecC
Q psy2407         165 EPSGGAGAVAMLISD  179 (245)
Q Consensus       165 ~~~~GDGAaA~ll~~  179 (245)
                      ..+.||||+|+||++
T Consensus       226 g~~~gEGAaalvL~~  240 (407)
T TIGR03150       226 GFVMGEGAGVLVLEE  240 (407)
T ss_pred             cEEEeceEEEEEEee
Confidence            356899999999986

FabB sequences should fall well below the noise cutoff of this model.

>PRK05952 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.09  E-value=7.4e-09  Score=93.86  Aligned_cols=164  Identities=9%  Similarity=0.055  Sum_probs=105.1

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHhhcccee------------eeecCCCCCHHHHHHHHHHHHHHhcCC
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQ------------KSVSLPYEDPVSFAINAAAPLIDNLSN   68 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~------------r~~~~~~e~~~~la~~Aa~~aL~~a~g   68 (245)
                      |++|.|.|+|..-|--.  .+++.+.+-..     +.||+.            +.+.........++..|+++||+++ |
T Consensus         1 ~~rVvITG~G~vsp~G~--~~~~~~~l~~G-----~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~Al~da-g   72 (381)
T PRK05952          1 MMKVVVTGIGLVSALGD--LEQSWQRLLQG-----KSGIKLHQPFPELPPLPLGLIGNQPSSLEDLTKTVVTAALKDA-G   72 (381)
T ss_pred             CCeEEEEeeEEECcccC--HHHHHHHHHcC-----CCCeEeCCcccccccccceeeccccccccHHHHHHHHHHHHhc-C
Confidence            89999999999999986  55554432000     112211            0000000112347778999999997 9


Q ss_pred             CCc--CCcCEEEEEeccCC--------------------C--------CCC-cHHHHHHHHcCCCCCcceeeecCcchhH
Q psy2407          69 IDK--NSIELIITCSESGI--------------------D--------FGK-SMSTYIHHYLGLNRNCRLFELKQACYSC  117 (245)
Q Consensus        69 ~~~--~dId~li~~t~~~~--------------------~--------~~p-~~a~~l~~~LGl~~~~~~~dv~~~C~~~  117 (245)
                      +++  +++. ++++|..+.                    .        .+| ..+..++..+|++  -+.+.+..+|+|+
T Consensus        73 l~~~~~~~G-v~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~ia~~~~~~--Gp~~ti~~aCasg  149 (381)
T PRK05952         73 LTPPLTDCG-VVIGSSRGCQGQWEKLARQMYQGDDSPDEELDLENWLDTLPHQAAIAAARQIGTQ--GPVLAPMAACATG  149 (381)
T ss_pred             CCCCCCCEE-EEEeeCcchHHHHHHHHHHHhhcCCccccccCHHHHHHhcccHHHHHHHHHhCCC--CccccccchhHHH
Confidence            864  4454 445553221                    0        011 3467788899994  3788899999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEEEEecc-ccccc----c-----Cccccccccccc--ccccccceeEEEEecC
Q psy2407         118 TAGLQMAINFILSKVSPGAKALVIATDI-SRFFV----T-----EDKNELTMEWAF--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       118 ~~aL~~A~~~i~sg~~~~~~aLVv~~e~-~s~~~----~-----~~~~~~~~~~~~--~~~~~GDGAaA~ll~~  179 (245)
                      +.||..|..+|++|.+  +.+||.++|. .+...    .     ..+  ...|+..  ...++||||++++|++
T Consensus       150 ~~Ai~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~ls~~--~~rPfd~~r~G~v~gEGaa~lvLe~  219 (381)
T PRK05952        150 LWAIAQGVELIQTGQC--QRVIAGAVEAPITPLTLAGFQQMGALAKT--GAYPFDRQREGLVLGEGGAILVLES  219 (381)
T ss_pred             HHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCcCCC--CCCCCCCCCCCccccccEEEEEEee
Confidence            9999999999999977  9999999996 32210    0     001  0112111  1357999999999986

>PRK07801 acetyl-CoA acetyltransferase; Provisional

Probab=99.08  E-value=6.7e-10  Score=100.75  Aligned_cols=98  Identities=13%  Similarity=0.142  Sum_probs=79.0

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCC-CCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI-DFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~-~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      +.+..+|+.+|+++||+++ |++++|||.+++++.... ...+..+..+.-.+|++..++++.++++|++++.++..|.+
T Consensus        23 ~~~~~~L~~~a~~~al~da-gl~~~~ID~vv~g~~~~~~~~~~~~~~~~~l~~gl~~~~p~~~v~~acaSg~~Av~~Aa~  101 (382)
T PRK07801         23 GVHPADLGAHVLKGLVDRT-GIDPAAVDDVIFGCVDTIGPQAGNIARTSWLAAGLPEEVPGVTVDRQCGSSQQAIHFAAQ  101 (382)
T ss_pred             CCCHHHHHHHHHHHHHHHc-CCCHHHcCEEEEEeeccCCcccccHHHHHHHHcCCCCCCceeeecchhhhHHHHHHHHHH
Confidence            4688999999999999997 999999999998754211 11233444444467775457888999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .|++|.+  +.+||++.|+++.
T Consensus       102 ~I~sG~~--d~vLv~G~e~ms~  121 (382)
T PRK07801        102 AVMSGTQ--DLVVAGGVQNMSQ  121 (382)
T ss_pred             HHHCCCC--CEEEEcchhhhcC
Confidence            9999977  9999999996643

>PRK08439 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=99.07  E-value=5.4e-09  Score=95.58  Aligned_cols=173  Identities=16%  Similarity=0.145  Sum_probs=108.6

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC----hHHHh------hc-c-cee---eeecCC-----CCCHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD----TVRFE------NL-L-MQQ---KSVSLP-----YEDPVSFAINA   58 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~----~~~~~------~~-G-i~~---r~~~~~-----~e~~~~la~~A   58 (245)
                      |++|.|.|+|...|--. +.+++.+.+  |.+    ...+.      .. | +..   ..+..+     -.....|+..|
T Consensus         1 m~~v~ItG~g~vsp~G~-~~~~~~~~L~~G~s~i~~~~~~~~~~~~~~~~g~i~~f~~~~~~~~~~~~~~~~~~~l~~~A   79 (406)
T PRK08439          1 MKRVVVTGIGMINSLGL-NKESSFKAICNGECGIKKITLFDASDFPVQIAGEITDFDPTEVMDPKEVKKADRFIQLGLKA   79 (406)
T ss_pred             CCCEEEEeeEEECCCcC-CHHHHHHHHHcCCCceEeCCCccccCCCCceeEEcCCcChhhcCCHHHHhhcCHHHHHHHHH
Confidence            67899999999999874 455554432  211    00000      00 1 110   000000     11246799999


Q ss_pred             HHHHHHhcCCCCcCCcCE----EEEEeccCC---------------------C----CC-CcHHHHHHHHcCCCCCccee
Q psy2407          59 AAPLIDNLSNIDKNSIEL----IITCSESGI---------------------D----FG-KSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        59 a~~aL~~a~g~~~~dId~----li~~t~~~~---------------------~----~~-p~~a~~l~~~LGl~~~~~~~  108 (245)
                      +++||+++ |+++++++.    +++++....                     +    .. ...+..|...+|+.  -+.+
T Consensus        80 a~~AL~dA-Gl~~~~~~~~r~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~--Gp~~  156 (406)
T PRK08439         80 AREAMKDA-GFLPEELDAERFGVSSASGIGGLPNIEKNSIICFEKGPRKISPFFIPSALVNMLGGFISIEHGLK--GPNL  156 (406)
T ss_pred             HHHHHHHc-CCCcccCCCCCEEEEEecCCccHHHHHHHHHHHHhcCccccCchhcccccccHHHHHHHHHhCCC--CCcc
Confidence            99999997 998877653    444442210                     0    11 14677889999994  4678


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc--Ccccc-ccccccc--cccccccee
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT--EDKNE-LTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~--~~~~~-~~~~~~~--~~~~~GDGA  172 (245)
                      .+..+|++++.||..|..+|++|.+  +.+||+++|.....           +.  ..++. ...++..  ...++|+||
T Consensus       157 ~~~~acas~~~Al~~A~~~i~~G~~--d~~lv~g~d~~l~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~v~gEGa  234 (406)
T PRK08439        157 SSVTACAAGTHAIIEAVKTIMLGGA--DKMLVVGAESAICPVGIGGFAAMKALSTRNDDPKKASRPFDKDRDGFVMGEGA  234 (406)
T ss_pred             ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecchhccCHHHHHHHHHhCccccCCCCCccCcCCccCCCCcEEeeCce
Confidence            8889999999999999999999977  99999999963111           00  00000 0111111  135789999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      ++++|++
T Consensus       235 ~~lvLe~  241 (406)
T PRK08439        235 GALVLEE  241 (406)
T ss_pred             EEEEEcc
Confidence            9999986

>PF00109 ketoacyl-synt: Beta-ketoacyl synthase, N-terminal domain; InterPro: IPR014030 Beta-ketoacyl-ACP synthase 2

Probab=99.06  E-value=3.2e-09  Score=90.55  Aligned_cols=124  Identities=24%  Similarity=0.208  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCc-----CEEEEEeccCCC-------------------C----CC-cHHHHHHHHcCC
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSI-----ELIITCSESGID-------------------F----GK-SMSTYIHHYLGL  101 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dI-----d~li~~t~~~~~-------------------~----~p-~~a~~l~~~LGl  101 (245)
                      ...|+..|+.+||+++ |+++.++     -.|++++..+++                   .    .| ..+..|+..+|+
T Consensus        87 ~~~~~l~aa~~Al~dA-g~~~~~~~~~~r~gv~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl  165 (254)
T PF00109_consen   87 QSRLALAAAREALEDA-GLDPDDLDGERRVGVFVGSSSGDYEFYRALDEDGETPRDVSPWFVPNTLPNSAAGRIAILFGL  165 (254)
T ss_dssp             HHHHHHHHHHHHHHHH-TSTGGGHTGGGTEEEEEEESSSHHHHHHHHHHHTTCGGGSHTTHHHHHSTTHHHHHHHHHHTB
T ss_pred             hhhHHHHHhhhhcccc-cccccccccccceeeccccccccccccccccccccccccccccccCcccccccccchhhhcCC
Confidence            5679999999999997 9988532     224455554421                   0    11 357788999999


Q ss_pred             CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEec-cccccc----------cCcccccccccccccccccc
Q psy2407         102 NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATD-ISRFFV----------TEDKNELTMEWAFFEPSGGA  170 (245)
Q Consensus       102 ~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e-~~s~~~----------~~~~~~~~~~~~~~~~~~GD  170 (245)
                      +  -+++.+..+|+|++.||..|..+|++|.+  +.+||.++| ..+...          ..+++.+.....-...++|+
T Consensus       166 ~--G~~~tv~~acaSgl~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~~~~~~~~~s~~~~~~pf~~~~~G~v~gE  241 (254)
T PF00109_consen  166 R--GPSYTVSTACASGLAALEAAYRAIRSGEA--DVALVGGVDAPLSPFILAGFSALGALSADGPCRPFDPFADGFVLGE  241 (254)
T ss_dssp             ---SSEEEEE-GGGHHHHHHHHHHHHHHTTSS--SEEEEEEEE--SSHHHHHHHHHTTBB-TTSGGGSTBTTB-SB-BB-
T ss_pred             C--Cccccccccccccccccchhccccccccc--cccccccccccccccccccccccccccccccccccCCCCCCEEEEC
Confidence            4  47788999999999999999999999977  999999999 433321          11111111111112468999


Q ss_pred             eeEEEEecC
Q psy2407         171 GAVAMLISD  179 (245)
Q Consensus       171 GAaA~ll~~  179 (245)
                      ||+++||++
T Consensus       242 Ga~~~vLe~  250 (254)
T PF00109_consen  242 GAGALVLER  250 (254)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEEEE
Confidence            999999975

3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the N-terminal domain of beta-ketoacyl-ACP synthases. ; PDB: 1J3N_B 3KZU_C 1W0I_A 2IX4_A 1F91_B 2BYZ_D 2AQB_C 2BZ3_C 1H4F_C 2VB9_B ....

>PRK07103 polyketide beta-ketoacyl:acyl carrier protein synthase; Validated

Probab=99.06  E-value=4.8e-09  Score=96.03  Aligned_cols=124  Identities=13%  Similarity=0.126  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCC---cCCcCEEEEEecc---------------CCCCCC---------cHHHHHHHHcCCCC
Q psy2407          51 PVSFAINAAAPLIDNLSNID---KNSIELIITCSES---------------GIDFGK---------SMSTYIHHYLGLNR  103 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~---~~dId~li~~t~~---------------~~~~~p---------~~a~~l~~~LGl~~  103 (245)
                      ...|+..|+++||+++ |++   +++|+.++.++..               +.+..|         ..+..|+..||+. 
T Consensus        80 ~~~lal~Aa~eAl~dA-gl~~~~~~riGvivG~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~-  157 (410)
T PRK07103         80 SAQAALAAAREAWRDA-ALGPVDPDRIGLVVGGSNLQQREQALVHETYRDRPAFLRPSYGLSFMDTDLVGLCSEQFGIR-  157 (410)
T ss_pred             HHHHHHHHHHHHHHhc-CcCCCCCCCEEEEEccCCcchHHHHHHHHHhccCccccChhhhhhhcchHHHHHHHHHhCCC-
Confidence            4579999999999997 986   4567666543321               111112         2566788999994 


Q ss_pred             CcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------cc----Ccccc-cccccc--ccc
Q psy2407         104 NCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VT----EDKNE-LTMEWA--FFE  165 (245)
Q Consensus       104 ~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~----~~~~~-~~~~~~--~~~  165 (245)
                       .+++.+..+|+|++.||..|..+|++|.+  +.+||+++|.. +..          +.    ..++. ...++.  ...
T Consensus       158 -G~~~tv~~acas~~~Al~~A~~~I~~G~~--d~~lv~g~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~rPfd~~~dG  234 (410)
T PRK07103        158 -GEGFTVGGASASGQLAVIQAARLVQSGSV--DACIAVGALMDLSYWECQALRSLGAMGSDRFADEPEAACRPFDQDRDG  234 (410)
T ss_pred             -CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHccccccCccCCCcccCcCCCCCCCCC
Confidence             47888999999999999999999999977  99999998642 110          00    00000 011111  013


Q ss_pred             ccccceeEEEEecC
Q psy2407         166 PSGGAGAVAMLISD  179 (245)
Q Consensus       166 ~~~GDGAaA~ll~~  179 (245)
                      .+.||||++++|++
T Consensus       235 ~v~gEGaaalvLe~  248 (410)
T PRK07103        235 FIYGEACGAVVLES  248 (410)
T ss_pred             eeEeeeEEEEEEcc
Confidence            57899999999986

>PRK09185 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed

Probab=98.99  E-value=4.1e-08  Score=89.41  Aligned_cols=88  Identities=17%  Similarity=0.218  Sum_probs=64.6

Q ss_pred             CcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc----c---Cccccccccc
Q psy2407          89 KSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV----T---EDKNELTMEW  161 (245)
Q Consensus        89 p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~----~---~~~~~~~~~~  161 (245)
                      +..+..|+..||++  -+++.+..+|++++.||..|..+|++|.+  +.+||+++|..+...    .   .-......|+
T Consensus       137 ~~~a~~ia~~lgl~--Gp~~~i~~acas~~~Al~~A~~~I~~G~~--d~vlvgg~d~~~~~~~~~~~~~~~l~~~~~~Pf  212 (392)
T PRK09185        137 GSLADFLRAYLGLS--GPAYTISTACSSSAKVFASARRLLEAGLC--DAAIVGGVDSLCRLTLNGFNSLESLSPQPCRPF  212 (392)
T ss_pred             cHHHHHHHHHhCCC--CCcccccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeccccChHHHHHHHhccccCCCccCCC
Confidence            35788899999994  37889999999999999999999999977  999999999654321    0   0000001121


Q ss_pred             cc--ccccccceeEEEEecCC
Q psy2407         162 AF--FEPSGGAGAVAMLISDK  180 (245)
Q Consensus       162 ~~--~~~~~GDGAaA~ll~~~  180 (245)
                      ..  ...++||||+++||++.
T Consensus       213 d~~~~G~~~gEGaa~vVLe~~  233 (392)
T PRK09185        213 SANRDGINIGEAAAFFLLERE  233 (392)
T ss_pred             cCCCCccceeceEEEEEEEEc
Confidence            11  13579999999999875

>PRK06333 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=98.96  E-value=1.7e-08  Score=92.76  Aligned_cols=124  Identities=19%  Similarity=0.097  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCc-C----EEEEEeccCCC---------------------CCC-----cHHHHHHHHc
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSI-E----LIITCSESGID---------------------FGK-----SMSTYIHHYL   99 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dI-d----~li~~t~~~~~---------------------~~p-----~~a~~l~~~L   99 (245)
                      ...|+..|+++||+++ |++++++ +    .+++++..+..                     ..+     ..+..|...+
T Consensus        82 ~~~l~~~aa~~Al~dA-gl~~~~~~~~~~~Gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~  160 (424)
T PRK06333         82 FILFAMAAAKEALAQA-GWDPDTLEDRERTATIIGSGVGGFPAIAEAVRTLDSRGPRRLSPFTIPSFLTNMAAGHVSIRY  160 (424)
T ss_pred             HHHHHHHHHHHHHHhc-CCCccccCCcccEEEEEecCcccHHHHHHHHHHHHhcCCcccChhHHhhhhhhHHHHHHHHHh
Confidence            4578999999999997 9987766 2    45555543211                     111     2356788899


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-----------C--c-ccc-ccccccc-
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-----------E--D-KNE-LTMEWAF-  163 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-----------~--~-~~~-~~~~~~~-  163 (245)
                      |+.  -+++.+..+|+|++.||..|..+|++|.+  +.+||+++|.......           .  . +++ ...++.. 
T Consensus       161 gl~--Gp~~~v~~aCaSg~~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~f~~~~~l~~~~~~~p~~~~~Pfd~~  236 (424)
T PRK06333        161 GFK--GPLGAPVTACAAGVQAIGDAARLIRSGEA--DVAVCGGTEAAIDRVSLAGFAAARALSTRFNDAPEQASRPFDRD  236 (424)
T ss_pred             CCC--CCCccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcccccccCCCCCCcCCCCCCCC
Confidence            994  57888999999999999999999999977  9999999998422110           0  0 000 0111111 


Q ss_pred             -ccccccceeEEEEecC
Q psy2407         164 -FEPSGGAGAVAMLISD  179 (245)
Q Consensus       164 -~~~~~GDGAaA~ll~~  179 (245)
                       ...+.||||+++||++
T Consensus       237 ~~G~~~gEGaa~lvLe~  253 (424)
T PRK06333        237 RDGFVMGEGAGILVIET  253 (424)
T ss_pred             CCCeEEecceEEEEEee
Confidence             1356899999999985

>PRK06690 acetyl-CoA acetyltransferase; Provisional

Probab=98.95  E-value=5.7e-09  Score=93.84  Aligned_cols=94  Identities=12%  Similarity=0.090  Sum_probs=81.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+.++.+|+..|++++++   |++ ++||.+|+++..+..  ...+..+...+|++..++++.|+++|++++.++..|..
T Consensus        21 ~~~~~~~L~~~a~~~~~~---gi~-~~Id~vi~G~~~~~~--~~~~r~~~~~~Gl~~~~p~~tV~~~CaSG~~Ai~~a~~   94 (361)
T PRK06690         21 KDYEVQQLAAPLLTFLSK---GME-REIDDVILGNVVGPG--GNVARLSALEAGLGLHIPGVTIDRQCGAGLEAIRTACH   94 (361)
T ss_pred             CCCCHHHHHHHHHHHHHc---cch-hhcCEEEEEecCCCc--chHHHHHHHHcCCCCCCCceehhhhhhHHHHHHHHHHH
Confidence            457789999999999843   786 899999999876542  45566788999996579999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +.+|+++.|++|.
T Consensus        95 ~I~sG~~--d~~l~gG~E~ms~  114 (361)
T PRK06690         95 FIQGGAG--KCYIAGGVESTST  114 (361)
T ss_pred             HHHCCCC--CEEEEeccccccC
Confidence            9999977  9999999999975

>PLN02836 3-oxoacyl-[acyl-carrier-protein] synthase

Probab=98.93  E-value=3.1e-08  Score=91.40  Aligned_cols=122  Identities=11%  Similarity=0.018  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHHHhcCCCCc-----CCcCEEEEEeccCCC-----------------C--------CC-cHHHHHHHHc
Q psy2407          51 PVSFAINAAAPLIDNLSNIDK-----NSIELIITCSESGID-----------------F--------GK-SMSTYIHHYL   99 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~-----~dId~li~~t~~~~~-----------------~--------~p-~~a~~l~~~L   99 (245)
                      ...|+..|+.+||+++ |+++     .+...+++++..+..                 .        .+ ..+.+|...+
T Consensus        93 ~~~~~~~aa~~Al~dA-g~~~~~~~~~~~~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~  171 (437)
T PLN02836         93 FIGYALCAADEALSDA-RWLPSEDEAKERTGVSIGGGIGSITDILEAAQLICEKRLRRLSPFFVPRILINMAAGHVSIRY  171 (437)
T ss_pred             HHHHHHHHHHHHHHHc-CCCcccccCCcCEEEEEeeccCcHHHHHHHHHHHHhcCCCCCChhhhhhhcccHHHHHHHHHh
Confidence            4578999999999997 9854     245667777643211                 0        11 2466788899


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------------cCcccccccccc
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------------TEDKNELTMEWA  162 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------------~~~~~~~~~~~~  162 (245)
                      |+.  -+++.+..+|++++.||..|..+|++|.+  +.+||.++|......                 ++..  ...++.
T Consensus       172 gl~--Gp~~tv~~acaSg~~Al~~A~~~I~~G~~--d~~lvgg~~~~~~~~~~~~~~~~~~l~~~~~~~p~~--~~~pfd  245 (437)
T PLN02836        172 GFQ--GPNHAAVTACATGAHSIGDAFRMIQFGDA--DVMVAGGTESSIDALSIAGFSRSRALSTKFNSCPTE--ASRPFD  245 (437)
T ss_pred             CCC--CceeceeChhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHHhhhhhcccCCCccc--ccCCcc
Confidence            984  47889999999999999999999999977  999999988632110                 0000  011111


Q ss_pred             c--ccccccceeEEEEecC
Q psy2407         163 F--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       163 ~--~~~~~GDGAaA~ll~~  179 (245)
                      .  ...+.||||+++||++
T Consensus       246 ~~~~G~~~gEGaaalVLe~  264 (437)
T PLN02836        246 CDRDGFVIGEGAGVLVLEE  264 (437)
T ss_pred             cCCCCeeeecCEEEEEEee
Confidence            1  1356899999999986

>PRK08142 acetyl-CoA acetyltransferase; Provisional

Probab=98.93  E-value=5.3e-09  Score=95.01  Aligned_cols=93  Identities=14%  Similarity=0.123  Sum_probs=77.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      ++.+..+|+.+|+++||+++ |++++|||.++..+..+    +.....+++.||++ ..+...+.++|+++..++..|..
T Consensus        21 ~~~~~~~L~~eA~~~Al~DA-gl~~~dID~~~~~~~~~----~~~~~~~~~~lGl~-~~~~~~v~~gg~s~~~a~~~A~~   94 (388)
T PRK08142         21 PDKSVAQLHAEVAKGALADA-GLSLADVDGYFCAGDAP----GLGPASMVDYLGLK-LRHVDSTETGGSSYLAHVGHAAQ   94 (388)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEcCCCC----CccHHHHHHhCCCC-CeeeccccCCcHHHHHHHHHHHH
Confidence            56788999999999999997 99999999987522211    11124588999994 56788889999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccc
Q psy2407         127 FILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s  147 (245)
                      .|++|.+  +.|||++.|+++
T Consensus        95 ~I~sG~~--d~vLvvg~e~~~  113 (388)
T PRK08142         95 AIAAGKC--SVALITLAGRPR  113 (388)
T ss_pred             HHHcCCC--CEEEEEeeeecc
Confidence            9999988  999999999853

>PTZ00050 3-oxoacyl-acyl carrier protein synthase; Provisional

Probab=98.91  E-value=3.1e-08  Score=90.98  Aligned_cols=125  Identities=16%  Similarity=0.115  Sum_probs=85.3

Q ss_pred             CHHHHHHHHHHHHHHhcCCCC-cCCcCE----EEEEeccCCC--------------------------CCCcHHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNID-KNSIEL----IITCSESGID--------------------------FGKSMSTYIHHY   98 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~-~~dId~----li~~t~~~~~--------------------------~~p~~a~~l~~~   98 (245)
                      ....|+..|+++||+++ |++ +++++.    +++++..+..                          ....++..|...
T Consensus        76 ~~~~l~~~aa~~Al~dA-Gl~~~~~~~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~  154 (421)
T PTZ00050         76 RATHFAMAAAREALADA-KLDILSEKDQERIGVNIGSGIGSLADLTDEMKTLYEKGHSRVSPYFIPKILGNMAAGLVAIK  154 (421)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCcccccCcccEEEEEccCcccHHHHHHHHHHHHhcCcCcCCHHHHHhhhhhHHHHHHHHH
Confidence            45789999999999997 998 666543    3344332211                          001345677888


Q ss_pred             cCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c---Ccccc-ccccccc
Q psy2407          99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T---EDKNE-LTMEWAF  163 (245)
Q Consensus        99 LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~---~~~~~-~~~~~~~  163 (245)
                      +|+.  -+++.+..+|+|++.||..|..+|++|.+  +.+||+++|......           .   ..++. ...++..
T Consensus       155 ~~l~--Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~p~~~~~f~~~~~l~~~~~~~p~~~~~pfd~  230 (421)
T PTZ00050        155 HKLK--GPSGSAVTACATGAHCIGEAFRWIKYGEA--DIMICGGTEASITPVSFAGFSRMRALCTKYNDDPQRASRPFDK  230 (421)
T ss_pred             hCCC--CcccccccHhHHHHHHHHHHHHHHHcCCC--CEEEECcccccCCHHHHHHHHhhhccccCcCCCCCccCCCCcC
Confidence            8984  47788999999999999999999999977  999999999742210           0   00000 0111111


Q ss_pred             --ccccccceeEEEEecC
Q psy2407         164 --FEPSGGAGAVAMLISD  179 (245)
Q Consensus       164 --~~~~~GDGAaA~ll~~  179 (245)
                        ...+.||||+++||++
T Consensus       231 ~~~G~~~gEGAaalvLe~  248 (421)
T PTZ00050        231 DRAGFVMGEGAGILVLEE  248 (421)
T ss_pred             CCCCEeeccceEEEEEee
Confidence              1356899999999986

>PRK07967 3-oxoacyl-(acyl carrier protein) synthase I; Reviewed

Probab=98.89  E-value=7.2e-08  Score=88.15  Aligned_cols=173  Identities=12%  Similarity=0.105  Sum_probs=106.6

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CC---Ch-HHHhhccceee----------eecC-----CCCCHHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KL---DT-VRFENLLMQQK----------SVSL-----PYEDPVSFAINAA   59 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~---~~-~~~~~~Gi~~r----------~~~~-----~~e~~~~la~~Aa   59 (245)
                      |.+|.|.|+|...|--. +.+++.+.+  |.   .+ ..+...+...+          .+..     .-.....|+..|+
T Consensus         1 m~rVvITG~G~vsp~G~-~~~~~w~~l~~G~sgi~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~a~~aa   79 (406)
T PRK07967          1 MRRVVITGLGIVSSIGN-NQQEVLASLREGRSGITFSPEFAEMGMRSQVWGNVKLDPTGLIDRKVMRFMGDASAYAYLAM   79 (406)
T ss_pred             CCcEEEEcceEECCCCC-CHHHHHHHHHcCCCceeECCcccccCCCCceEEEcCCChhhcCCHHHhhcCCHHHHHHHHHH
Confidence            67899999999999874 556655432  11   10 00000011101          0000     0112456889999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC--------------------------CC-CcHHHHHHHHcCCCCCccee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID--------------------------FG-KSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~--------------------------~~-p~~a~~l~~~LGl~~~~~~~  108 (245)
                      ++||+++ |+++++.+    .|++++..+..                          .. ...+..|...+|++  -+.+
T Consensus        80 ~~Al~dA-Gl~~~~~~~~rvGv~~gs~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~~~l~--Gp~~  156 (406)
T PRK07967         80 EQAIADA-GLSEEQVSNPRTGLIAGSGGGSTRNQVEAADAMRGPRGPKRVGPYAVTKAMASTVSACLATPFKIK--GVNY  156 (406)
T ss_pred             HHHHHHc-CCCCccCCCCCEEEEEecCCccHHHHHHHHHHHHhccCcccCCchhhcccccchHHHHHHHHHCCC--CCcc
Confidence            9999997 98754322    24444422110                          01 13577889999994  4778


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc----------C---cccc-ccccccc--cccccccee
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT----------E---DKNE-LTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~----------~---~~~~-~~~~~~~--~~~~~GDGA  172 (245)
                      .+..+|++++.||..|..+|++|.+  +.+||.++|..+....          .   .+++ ...|+..  ..++.|+||
T Consensus       157 tvs~aCas~~~Ai~~A~~~ir~G~~--d~~lvgg~d~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G~v~gEGa  234 (406)
T PRK07967        157 SISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELDWEMSCLFDAMGALSTKYNDTPEKASRAYDANRDGFVIAGGG  234 (406)
T ss_pred             ccccHhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccChHHHHHHHHhhhhccCCCCCCCcCCcCCcCCCCceeeeceE
Confidence            8999999999999999999999977  9999999987533210          0   0000 0112211  135689999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      ++++|++
T Consensus       235 a~lvLe~  241 (406)
T PRK07967        235 GVVVVEE  241 (406)
T ss_pred             EEEEEee
Confidence            9999985

>PRK08722 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=98.89  E-value=6.7e-08  Score=88.61  Aligned_cols=171  Identities=12%  Similarity=0.084  Sum_probs=106.7

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHh------hc-c-cee---eeecCC----C-CCHHHHHHHHHH
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFE------NL-L-MQQ---KSVSLP----Y-EDPVSFAINAAA   60 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~------~~-G-i~~---r~~~~~----~-e~~~~la~~Aa~   60 (245)
                      .|.|.|+|...|--. +.+++.+.+  |.+   + +++.      .. | +..   ..+..+    . .....++..|+.
T Consensus         5 ~VvItG~g~~~p~g~-~~~~~w~~L~~g~s~i~~~~~~~~~~~~~~~~g~i~~~~~~~~~~~~~~~~~d~~~~~~l~a~~   83 (414)
T PRK08722          5 RVVVTGMGMLSPVGN-TVESSWKALLAGQSGIVNIEHFDTTNFSTRFAGLVKDFNCEEYMSKKDARKMDLFIQYGIAAGI   83 (414)
T ss_pred             CEEEEeeEEECCCCC-CHHHHHHHHHhCCCeeeecCccccccCCCceeEEcCCCChhHcCCHHHHhhcCHHHHHHHHHHH
Confidence            699999999999873 566665432  111   0 0110      00 1 110   000000    0 113458889999


Q ss_pred             HHHHhcCCCCcCCcC----EEEEEeccCCC-------------------------CCC-cHHHHHHHHcCCCCCcceeee
Q psy2407          61 PLIDNLSNIDKNSIE----LIITCSESGID-------------------------FGK-SMSTYIHHYLGLNRNCRLFEL  110 (245)
Q Consensus        61 ~aL~~a~g~~~~dId----~li~~t~~~~~-------------------------~~p-~~a~~l~~~LGl~~~~~~~dv  110 (245)
                      +||+++ |+++.+.+    .|++++..+..                         ..+ ..+.++...+|+.  -+.+.+
T Consensus        84 ~Al~dA-Gl~~~~~~~~r~Gv~vGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~gl~--Gp~~ti  160 (414)
T PRK08722         84 QALDDS-GLEVTEENAHRIGVAIGSGIGGLGLIEAGHQALVEKGPRKVSPFFVPSTIVNMIAGNLSIMRGLR--GPNIAI  160 (414)
T ss_pred             HHHHHc-CCCccccCCCCEEEEEeeCCCcchhHHHHHHHHHhcCcccCCchhcccccccHHHHHHHHHhCCC--CCcccc
Confidence            999997 98754333    35555542210                         011 3677888999994  478899


Q ss_pred             cCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC--cccc-ccccccc--ccccccceeEE
Q psy2407         111 KQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE--DKNE-LTMEWAF--FEPSGGAGAVA  174 (245)
Q Consensus       111 ~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~--~~~~-~~~~~~~--~~~~~GDGAaA  174 (245)
                      ..+|++++.||..|..+|++|.+  +.+||.++|.....           +..  .+++ ...++..  ...+.||||++
T Consensus       161 ~~aCas~~~Al~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rpfd~~~~G~~~gEGaaa  238 (414)
T PRK08722        161 STACTTGLHNIGHAARMIAYGDA--DAMVAGGAEKASTPLGMAGFGAAKALSTRNDEPQKASRPWDKDRDGFVLGDGAGM  238 (414)
T ss_pred             ccccHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHcCCcccCCCCCccccCcCcCCCCceEeeceEEE
Confidence            99999999999999999999977  99999999985431           100  0000 1112211  13568999999


Q ss_pred             EEecC
Q psy2407         175 MLISD  179 (245)
Q Consensus       175 ~ll~~  179 (245)
                      +||++
T Consensus       239 lvLe~  243 (414)
T PRK08722        239 MVLEE  243 (414)
T ss_pred             EEEcc
Confidence            99986

>PRK08257 acetyl-CoA acetyltransferase; Validated

Probab=98.83  E-value=3.1e-08  Score=92.74  Aligned_cols=93  Identities=16%  Similarity=0.103  Sum_probs=77.7

Q ss_pred             CHHHHHHHHHHHHHHhcCCCC--cCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNID--KNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~--~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +..+|+.+|+++||+++ |++  ++|||.+++++.... ........+++.||+. ..+......||.++..++..|...
T Consensus        26 s~~~L~~eA~~~Al~DA-Gl~~~~~dID~v~v~~~~~~-~~~~~~~~la~~lGl~-p~~~~~~~~GG~s~~~~v~~Aa~~  102 (498)
T PRK08257         26 EPVDLMAAAARAAAADA-GADAVLEAIDSVAVVNQLSW-RYRDPPGLLAERLGAD-PARTVYSPVGGNSPQRLVNEAALR  102 (498)
T ss_pred             CHHHHHHHHHHHHHHhc-CCCcCHHHCCEEEEeccccc-cccCHHHHHHHHcCCC-CcceeEecCCCHHHHHHHHHHHHH
Confidence            78999999999999997 999  999999998755321 2233467899999995 345555667899999999999999


Q ss_pred             HhcCCCCCCeEEEEEecccc
Q psy2407         128 ILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s  147 (245)
                      |++|.+  +.|||+++|+++
T Consensus       103 IasG~a--dvVLv~G~E~~~  120 (498)
T PRK08257        103 IAAGEA--DVALVAGAEAQS  120 (498)
T ss_pred             HHCCCC--CEEEEeeeeecc
Confidence            999987  999999999865

>PRK07855 lipid-transfer protein; Provisional

Probab=98.81  E-value=2.7e-08  Score=90.43  Aligned_cols=89  Identities=11%  Similarity=0.114  Sum_probs=74.6

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      ++.+..+|+.+|+++||+++ |++++|||.+++.+..   ..+  ...+++.||+++..+...+.++|+++..++..|..
T Consensus        20 ~~~~~~~L~~eA~~~Al~DA-gl~~~dID~~~~~~~~---~~~--~~~l~~~lGl~~~~~~~~v~~gg~sg~~~~~~A~~   93 (386)
T PRK07855         20 SGRSELRLACEAVLAALDDA-GLAPSDVDGLVTFTMD---TNP--EIAVARALGIGELKFFSRIHYGGGAACATVQQAAM   93 (386)
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEecCc---ccc--HHHHHHHCCCCCCcceeeecCCcHHHHHHHHHHHH
Confidence            46788999999999999997 9999999999864321   222  25688999995324556889999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEe
Q psy2407         127 FILSKVSPGAKALVIAT  143 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~  143 (245)
                      .|++|.+  +.|||++.
T Consensus        94 ~I~sG~~--d~vLv~g~  108 (386)
T PRK07855         94 AVATGVA--DVVVCYRA  108 (386)
T ss_pred             HHHCCCC--CEEEEEee
Confidence            9999988  99999988

>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II

Probab=98.81  E-value=1.9e-07  Score=88.01  Aligned_cols=172  Identities=15%  Similarity=0.140  Sum_probs=105.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CC---Ch------HHHh-hc-c-ceeee---ecCC----C-CCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KL---DT------VRFE-NL-L-MQQKS---VSLP----Y-EDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~---~~------~~~~-~~-G-i~~r~---~~~~----~-e~~~~la~~Aa   59 (245)
                      +.|.|.|+|...|--. +.+++.+.+  |.   .+      ..+. +. | ++...   +..+    . .....++..|+
T Consensus       129 ~rVvITG~G~vtp~G~-~~~~~w~~L~~G~s~i~~~~~f~~~~~~~~~ag~i~~f~~~~~l~~k~~r~md~~~~~al~Aa  207 (540)
T PLN02787        129 RRVVVTGMGVVSPLGH-DPDVFYNNLLEGVSGISEIERFDCSQFPTRIAGEIKSFSTDGWVAPKLSKRMDKFMLYLLTAG  207 (540)
T ss_pred             CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcccccCccchhhCCccccccccccChhhcCCHHHHHhCCHHHHHHHHHH
Confidence            3699999999999873 566665433  11   10      0010 11 1 11000   0000    1 12346888999


Q ss_pred             HHHHHhcCCCCcCC---c----CEEEEEeccCCC--------------------CC-----CcHHHHHHHHcCCCCCcce
Q psy2407          60 APLIDNLSNIDKNS---I----ELIITCSESGID--------------------FG-----KSMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        60 ~~aL~~a~g~~~~d---I----d~li~~t~~~~~--------------------~~-----p~~a~~l~~~LGl~~~~~~  107 (245)
                      ++||+++ |++++.   +    -.|++++..+..                    ..     ...+..|+..+|+.  -+.
T Consensus       208 ~eAL~dA-Gl~~~~~~~~~~~r~GV~vGt~~g~~~~~~~~~~~l~~~~~~~~p~~~~~~~~n~~a~~ia~~~gl~--Gp~  284 (540)
T PLN02787        208 KKALADG-GITEDVMKELDKTKCGVLIGSAMGGMKVFNDAIEALRISYRKMNPFCVPFATTNMGSAMLAMDLGWM--GPN  284 (540)
T ss_pred             HHHHHHc-CCCcccccccCCCceEEEEEeccchHHHHHHHHHHHhhccccCCcchhhhhcccHHHHHHHHHhCCC--CCc
Confidence            9999997 987542   2    145666543210                    01     12356788889994  478


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc--Ccccc-ccccccc--ccccccce
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT--EDKNE-LTMEWAF--FEPSGGAG  171 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~--~~~~~-~~~~~~~--~~~~~GDG  171 (245)
                      +.+..+|++++.||..|.++|++|.+  +.+||.++|.....           +.  ..++. ...+|..  ..+++|+|
T Consensus       285 ~tistACASs~~Ai~~A~~~Ir~G~a--D~aLvGG~d~~l~p~~~~~f~~~~aLS~~~~~p~~~~rPFD~~rdGfv~GEG  362 (540)
T PLN02787        285 YSISTACATSNFCILNAANHIIRGEA--DVMLCGGSDAAIIPIGLGGFVACRALSQRNDDPTKASRPWDMNRDGFVMGEG  362 (540)
T ss_pred             cccccccccHHHHHHHHHHHHHcCCC--CEEEEeccccccCHHHHHHHHHHHHhhccCCCcccccCCcccCCCCcccccc
Confidence            88999999999999999999999977  99999999963111           10  01110 1112221  13678999


Q ss_pred             eEEEEecC
Q psy2407         172 AVAMLISD  179 (245)
Q Consensus       172 AaA~ll~~  179 (245)
                      |+++||++
T Consensus       363 Aa~lVLE~  370 (540)
T PLN02787        363 AGVLLLEE  370 (540)
T ss_pred             eEEEEEee
Confidence            99999985

>PRK09116 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=98.81  E-value=2.1e-07  Score=85.11  Aligned_cols=172  Identities=15%  Similarity=0.093  Sum_probs=106.5

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHH-----Hh-hc-c-cee---eeecCC----C-CCHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVR-----FE-NL-L-MQQ---KSVSLP----Y-EDPVSFAIN   57 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~-----~~-~~-G-i~~---r~~~~~----~-e~~~~la~~   57 (245)
                      |++|.|.|+|...|--. +.+++.+.+  |.+     +++     +. +. | +..   .....+    . .....|+..
T Consensus         1 m~~VvITG~g~vtp~G~-~~~~~~~~L~~g~s~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~r~~~~~~~~al~   79 (405)
T PRK09116          1 MRRVVVTGMGGVTALGE-DWQTIAARLKAGRNAVRRMPEWDRYDGLNTRLAAPIDDFELPAHYTRKKIRSMGRVSLMATR   79 (405)
T ss_pred             CCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCCEEeCCchhhccCCCCceEEEecCcChhHhcCHHHHhhCCHHHHHHHH
Confidence            67899999999999874 556655432  111     011     00 00 1 100   000000    0 123568999


Q ss_pred             HHHHHHHhcCCCCc------CCcCEEEEEeccCC-----------------C--------CCC-cHHHHHHHHcCCCCCc
Q psy2407          58 AAAPLIDNLSNIDK------NSIELIITCSESGI-----------------D--------FGK-SMSTYIHHYLGLNRNC  105 (245)
Q Consensus        58 Aa~~aL~~a~g~~~------~dId~li~~t~~~~-----------------~--------~~p-~~a~~l~~~LGl~~~~  105 (245)
                      |+++||+++ |+..      +++ .+++++..+.                 .        .+| ..+..|+..+|++  -
T Consensus        80 aa~~Al~dA-Gl~~~~~~~~~r~-Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~--G  155 (405)
T PRK09116         80 ASELALEDA-GLLGDPILTDGRM-GIAYGSSTGSTDPIGAFGTMLLEGSMSGITATTYVRMMPHTTAVNVGLFFGLK--G  155 (405)
T ss_pred             HHHHHHHHc-CCCCccccCCCcE-EEEEeecccchHHHHHHHHHHhhcCccccChhhhhhhcccHHHHHHHHHhCCC--C
Confidence            999999997 9842      233 4555553221                 0        112 2577888999994  4


Q ss_pred             ceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc----------cC--cccc-ccccccc--ccccccc
Q psy2407         106 RLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV----------TE--DKNE-LTMEWAF--FEPSGGA  170 (245)
Q Consensus       106 ~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~----------~~--~~~~-~~~~~~~--~~~~~GD  170 (245)
                      +.+.+..+|++++.||..|..+|++|.+  +.+||.++|..+...          ..  ..+. ...++..  ..++.|+
T Consensus       156 p~~ti~~acas~~~Al~~A~~~I~~G~~--d~~lvgg~d~~~~~~~~~f~~l~~~~~~~~~~~~~~rPfd~~~~G~v~gE  233 (405)
T PRK09116        156 RVIPTSSACTSGSQGIGYAYEAIKYGYQ--TVMLAGGAEELCPTEAAVFDTLFATSTRNDAPELTPRPFDANRDGLVIGE  233 (405)
T ss_pred             CcccccchhhhHHHHHHHHHHHHHcCCC--CEEEEecchhcChHHHHHHHHhhhhccCCCCCCCCCCCCcCCCCCEeeec
Confidence            7889999999999999999999999977  999999999754210          00  0000 1112211  1356899


Q ss_pred             eeEEEEecC
Q psy2407         171 GAVAMLISD  179 (245)
Q Consensus       171 GAaA~ll~~  179 (245)
                      ||++++|++
T Consensus       234 Ga~~~vLe~  242 (405)
T PRK09116        234 GAGTLVLEE  242 (405)
T ss_pred             cEEEEEEcc
Confidence            999999985

>PRK06066 acetyl-CoA acetyltransferase; Provisional

Probab=98.79  E-value=4.9e-08  Score=88.55  Aligned_cols=95  Identities=16%  Similarity=0.116  Sum_probs=73.0

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCC-CCc-CCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSN-IDK-NSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g-~~~-~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ++.+..+|+.+|+++||+++ | +++ +|||.+++++.............+++.||+. ..+.+.+   |+++..++..|
T Consensus        21 ~~~s~~eL~~eA~~~Al~DA-G~l~~~~dId~~~~~~~~~~~~~~~~~~~~~~~lg~~-~~~~~~v---~~sg~~a~~~A   95 (385)
T PRK06066         21 PEVSFREMMFEAASRAYKDA-GNINPRRDVDSFISCQEDFWEGIAIADEFAPDQIGGA-MRPTMTV---AGDGLQGLAHA   95 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhc-CCCCChhcCCEEEEecCcccCcccccchhHHHHcccC-CCCeEEE---eCcHHHHHHHH
Confidence            47888999999999999997 9 997 7999998753211000112234567889984 3455555   88999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ...|++|.+  ++|||++.|+++.
T Consensus        96 ~~aV~sG~~--d~vLv~g~~~~~~  117 (385)
T PRK06066         96 VMHINSGLA--NVVVVEAHSKPSD  117 (385)
T ss_pred             HHHHHcCCC--CEEEEEEEeeccC
Confidence            999999988  9999999997643

>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional

Probab=98.78  E-value=2.4e-07  Score=82.80  Aligned_cols=123  Identities=12%  Similarity=0.044  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHhcCCC--CcCCcCEEEEEeccCCC-----------------CCC---------cHHHHHHHHcCCC
Q psy2407          51 PVSFAINAAAPLIDNLSNI--DKNSIELIITCSESGID-----------------FGK---------SMSTYIHHYLGLN  102 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~--~~~dId~li~~t~~~~~-----------------~~p---------~~a~~l~~~LGl~  102 (245)
                      ...++..|+++|++++ |+  +++++..++ ++..+..                 ..|         ..+..|...+|++
T Consensus         4 ~~~~~~~a~~~a~~~a-~~~~~~~r~Gv~~-G~~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~~l~   81 (342)
T PRK14691          4 WWRYKWITFHPSLTHA-DNTEKQERTATII-GAGIGGFPAIAHAVRTSDSRGPKRLSPFTVPSFLVNLAAGHVSIKHHFK   81 (342)
T ss_pred             HHHHHHHHHHHHHHhC-CCCCCcccEEEEE-ecCcccHHHHHHHHHHHHhcCccccChhHHhhhhhhHHHHHHHHHhCCC
Confidence            3568899999999997 96  566665554 4432110                 001         3567788889994


Q ss_pred             CCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------cc---Ccccc-ccccccc--cc
Q psy2407         103 RNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VT---EDKNE-LTMEWAF--FE  165 (245)
Q Consensus       103 ~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~---~~~~~-~~~~~~~--~~  165 (245)
                        -+.+.+..+|+|++.||..|..+|+.|..  +.+||.++|.....           +.   ..+++ ...|+..  ..
T Consensus        82 --Gp~~ti~~aCaSg~~Al~~A~~~I~~G~~--d~~ivgg~d~~~~~~~~~~f~~~~~ls~~~~~~p~~~~rPFd~~r~G  157 (342)
T PRK14691         82 --GPIGAPVTACAAGVQAIGDAVRMIRNNEA--DVALCGGAEAVIDTVSLAGFAAARALSTHFNSTPEKASRPFDTARDG  157 (342)
T ss_pred             --CCccccccHhHHHHHHHHHHHHHHHcCCC--CEEEEecccccCCHHHHHHHHHhhhhhcCCCCCCCcCCCCCCCCCCC
Confidence              47888999999999999999999999977  99999999974221           10   00111 1112221  13


Q ss_pred             ccccceeEEEEecC
Q psy2407         166 PSGGAGAVAMLISD  179 (245)
Q Consensus       166 ~~~GDGAaA~ll~~  179 (245)
                      +++||||++++|++
T Consensus       158 ~v~gEGAa~lvLes  171 (342)
T PRK14691        158 FVMGEGAGLLIIEE  171 (342)
T ss_pred             ccccceEEEEEEee
Confidence            57899999999985

>cd00832 CLF Chain-length factor (CLF) is a factor required for polyketide chain initiation of aromatic antibiotic-producing polyketide synthases (PKSs) of filamentous bacteria

Probab=98.74  E-value=3.2e-07  Score=83.75  Aligned_cols=123  Identities=13%  Similarity=0.077  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCC-----------------CC---------CcHHHHHHHHcC
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGID-----------------FG---------KSMSTYIHHYLG  100 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~-----------------~~---------p~~a~~l~~~LG  100 (245)
                      ...|+..|+++||+++ |+++++++    .|++++..+.+                 ..         ...+..|...+|
T Consensus        71 ~~~~~l~aa~eAl~dA-Gl~~~~~~~~r~Gv~~Gt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g  149 (399)
T cd00832          71 MTRLALAAADWALADA-GVDPAALPPYDMGVVTASAAGGFEFGQRELQKLWSKGPRHVSAYQSFAWFYAVNTGQISIRHG  149 (399)
T ss_pred             HHHHHHHHHHHHHHHc-CCCccccCCCceEEEEccCCccHHHHHHHHHHHHhcCccccChhhhhhhhhhHHHHHHHHHhC
Confidence            4568999999999997 99765443    35555543211                 00         124567888999


Q ss_pred             CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC-cccc-ccccccc--cc
Q psy2407         101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE-DKNE-LTMEWAF--FE  165 (245)
Q Consensus       101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~-~~~~-~~~~~~~--~~  165 (245)
                      +.  -+++.+..+|++++.||..|.++|++|  + +.+||.++|.....           +.. .++. ...++..  ..
T Consensus       150 l~--Gp~~ti~~acaS~~~Al~~A~~~i~~G--~-d~~i~gg~d~~~~p~~~~~~~~~~~ls~~~~p~~~~rPFd~~~~G  224 (399)
T cd00832         150 MR--GPSGVVVAEQAGGLDALAQARRLVRRG--T-PLVVSGGVDSALCPWGWVAQLSSGRLSTSDDPARAYLPFDAAAAG  224 (399)
T ss_pred             CC--CCcccccchhHHHHHHHHHHHHHHHcC--C-CeEEEEeeccccCHHHHHHHHhccccCCCCCCCCCcCCCcCCCCC
Confidence            94  478889999999999999999999999  7 89999999874321           100 0100 1112211  13


Q ss_pred             ccccceeEEEEecC
Q psy2407         166 PSGGAGAVAMLISD  179 (245)
Q Consensus       166 ~~~GDGAaA~ll~~  179 (245)
                      ++.|+||++++|++
T Consensus       225 ~~~gEGa~~lvLe~  238 (399)
T cd00832         225 YVPGEGGAILVLED  238 (399)
T ss_pred             EeeeceEEEEEEee
Confidence            57899999999986

CLFs have been shown to have decarboxylase activity towards malonyl-acyl carrier protein (ACP). CLFs are similar to other elongation ketosynthase domains, but their active site cysteine is replaced by a conserved glutamine.

>COG0183 PaaJ Acetyl-CoA acetyltransferase [Lipid metabolism]

Probab=98.74  E-value=4.6e-08  Score=89.03  Aligned_cols=101  Identities=13%  Similarity=0.096  Sum_probs=80.1

Q ss_pred             CCCHHHHHHHHHHHHHHhc-CCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNL-SNIDKNSIELIITCSESGID-FGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a-~g~~~~dId~li~~t~~~~~-~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      +....++.....+..+++. .++++.+||.++.++..+.. ..+..+..++..+|++.++|.+.|+.+|+|++.++..|.
T Consensus        24 ~l~~e~l~~a~~~a~~~~~~~~vd~~~v~~~~~G~~~~~g~~~~~~ar~~a~~aGl~~~~p~~~V~~~c~SG~~Av~~A~  103 (392)
T COG0183          24 ELAAEALGAALIDAGLERAPADVDAADVDDVILGCVLQAGEQGQNIARQAALAAGLPGSVPAVTVNRACASGLAAVRLAA  103 (392)
T ss_pred             hcCHHHHHHHHHHHHhhhccccCCHHHhhhheeccccccccccccHHHHHHHHcCCCCCCCceEEeccchhHHHHHHHHH
Confidence            3444555555555554321 14666778888998776653 466889999999999656999999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRFFV  150 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~~  150 (245)
                      ..|++|.+  +.+|+++.|++|...
T Consensus       104 ~~I~sG~~--dvvlagG~E~mS~~~  126 (392)
T COG0183         104 QAIASGEA--DVVLAGGVEKMSDAP  126 (392)
T ss_pred             HHHHCCCC--CEEEEEeeeeccCCC
Confidence            99999977  999999999999875

>KOG1390|consensus

Probab=98.71  E-value=3.9e-08  Score=84.90  Aligned_cols=112  Identities=10%  Similarity=0.035  Sum_probs=99.1

Q ss_pred             hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          36 NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        36 ~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                      ||-|..++-.....++.+|+.-|++.+|+++ +++++|++-+|++...+....-.++++.+--.||+..+++..++.-|+
T Consensus        15 RTPIGsF~gslssl~A~~Lgsvaikaalera-~v~~~~v~eVi~GnVl~AnlGQapaRQaalgAGlp~sv~~tTvNkvCa   93 (396)
T KOG1390|consen   15 RTPIGSFRGSLSSLTATELGSVAIKAALERA-VVPPSDVAEVIFGNVLSANLGQAPARQAALGAGLPYSVPATTVNKVCA   93 (396)
T ss_pred             cccccccccccccCchhhHHHHHHHHHHHhc-CCCHHHhhhhhhccccccccCcchHHHHHhhcCCCcceeeEeehhhhh
Confidence            5666666666677899999999999999997 999999999999988776666677999998999987899999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRFFV  150 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~  150 (245)
                      |++.++.+|.+-|+.|..  +.++..+.|.||..-
T Consensus        94 SgmKAv~laaQsI~~G~~--divVaGGmEsMS~vP  126 (396)
T KOG1390|consen   94 SGMKAVILAAQSIQTGHA--DIVVAGGMESMSNVP  126 (396)
T ss_pred             hhHHHHHHHHHHHhcCCc--cEEEecccchhccCc
Confidence            999999999999999966  999999999998753

>PRK07910 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=98.69  E-value=5.3e-07  Score=82.79  Aligned_cols=172  Identities=12%  Similarity=0.029  Sum_probs=104.5

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CC------ChHHHhhccceee---eec-------CC----C-CCHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KL------DTVRFENLLMQQK---SVS-------LP----Y-EDPVSFAIN   57 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~------~~~~~~~~Gi~~r---~~~-------~~----~-e~~~~la~~   57 (245)
                      |+.|.|.|+|...|--. +.+++.+.+  |.      +...+...++..+   .+.       .+    . .....++..
T Consensus        11 ~~~VvItGig~~sp~g~-~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~g~i~~~~d~~~~~~~~~~~d~~~~~~l~   89 (418)
T PRK07910         11 FPNVVVTGIAMTTALAT-DAETTWKLLLDGQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRVELRRMSYLQRMSTV   89 (418)
T ss_pred             CCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCeeEeCChhhhhccCCCcceEEEeccCccccCCHHHHhhccHHHHHHHH
Confidence            46799999999999864 566665543  11      1111111000000   000       00    0 123458889


Q ss_pred             HHHHHHHhcCCC---CcCCcCEEEEEeccCCC-------------------------CCC-cHHHHHHHHcCCCCCccee
Q psy2407          58 AAAPLIDNLSNI---DKNSIELIITCSESGID-------------------------FGK-SMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        58 Aa~~aL~~a~g~---~~~dId~li~~t~~~~~-------------------------~~p-~~a~~l~~~LGl~~~~~~~  108 (245)
                      |+++||+++ |+   ++.++..+ +++..+..                         ..+ ..+..+...+|+.  -+.+
T Consensus        90 aa~~AledA-g~~~~~~~r~Gv~-~G~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~a~~is~~~~~~--G~~~  165 (418)
T PRK07910         90 LGRRVWENA-GSPEVDTNRLMVS-IGTGLGSAEELVFAYDDMRARGLRAVSPLAVQMYMPNGPAAAVGLERHAK--AGVI  165 (418)
T ss_pred             HHHHHHHHc-CCCCCCcccEEEE-EEEccCccHhHHHHHHHHHhcCcccCChhHHHHhccccHHHHHHHHhCCC--CCcc
Confidence            999999997 86   44555444 44432110                         011 2456677778874  3678


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc------------ccC--cccc-ccccccc--ccccccce
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF------------VTE--DKNE-LTMEWAF--FEPSGGAG  171 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~------------~~~--~~~~-~~~~~~~--~~~~~GDG  171 (245)
                      .+..+|+|++.||..|.++|++|.+  +.+||.++|.....            +..  .+++ ...++..  ..+++|+|
T Consensus       166 ti~taCaS~~~Al~~A~~~I~~G~~--d~aivgg~~~~~~~~~~~~f~~~~~~ls~~~~~~~~~~rPFd~~~~G~v~gEG  243 (418)
T PRK07910        166 TPVSACASGSEAIAQAWRQIVLGEA--DIAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAGACRPFDKDRDGFVFGEG  243 (418)
T ss_pred             cccchhHHHHHHHHHHHHHHHcCCC--CEEEEccccccCCHHHHHHHHhcCCccccCCCCCCCCcCCCcCCCCCEeeece
Confidence            8899999999999999999999977  99999999974221            110  0000 1112211  14679999


Q ss_pred             eEEEEecC
Q psy2407         172 AVAMLISD  179 (245)
Q Consensus       172 AaA~ll~~  179 (245)
                      +++++|++
T Consensus       244 aa~vvLe~  251 (418)
T PRK07910        244 GALMVIET  251 (418)
T ss_pred             EEEEEEee
Confidence            99999986

>KOG1406|consensus

Probab=98.58  E-value=7.6e-08  Score=81.35  Aligned_cols=96  Identities=15%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      ++-+-+||+.+|..+||+++ ++.-++|+.-+++-..++...   ..+..-.+|+ ..+|.+.|+++|+++-.+|.+|.+
T Consensus        25 ~~~dypd~a~ea~tkal~da-~ikys~vqqa~vgyvfgdstc---gqraiyevgm-tgipi~nvnnncatgssalflakq   99 (408)
T KOG1406|consen   25 ADWDYPDFAKEAITKALQDA-GIKYSEVQQAVVGYVFGDSTC---GQRAIYEVGM-TGIPIYNVNNNCATGSSALFLAKQ   99 (408)
T ss_pred             cCCCCchHHHHHHHHHHHhc-CCCHHHHHhhhheeeecCCcc---chHHHHhccc-cCcceeeccCccccCchHHHHHHH
Confidence            45677899999999999997 999999988877666554332   3444458999 589999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEecccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      +|++|..  ++||..+-|++++.
T Consensus       100 iiesgn~--dcvlalgfekm~~g  120 (408)
T KOG1406|consen  100 IIESGNS--DCVLALGFEKMERG  120 (408)
T ss_pred             HHhcCCc--ceEEeechhhhCCc
Confidence            9999966  99999999999654

>COG3321 Polyketide synthase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.56  E-value=7.7e-06  Score=82.93  Aligned_cols=121  Identities=14%  Similarity=0.085  Sum_probs=90.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCCCCC-------------------cHHHHHHHHcCCCCCccee
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGIDFGK-------------------SMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~~~p-------------------~~a~~l~~~LGl~~~~~~~  108 (245)
                      .-|..+.+-+||+++ |+++..+.    .|+.+....+|...                   ..+.+|...|++.  -|.+
T Consensus        92 qRllLe~aw~AlEdA-G~~~~~l~g~~tgV~~g~~~~~y~~~~~~~~~~~~~~~~~g~~~~~~a~Risy~l~l~--GPs~  168 (1061)
T COG3321          92 QRLLLEVAWEALEDA-GIYPDSLRGSATGVFAGASVADYLLLLLADDEAEPEYAITGNSSSVAAGRISYVLGLS--GPSV  168 (1061)
T ss_pred             HhHHHHHHHHHHHHc-CCCccccCCcceEEEEeeccCccccccccccccccceecccchhhHHHHHHHHHhcCC--CCCc
Confidence            348999999999997 99999888    46666665555432                   2577889999994  5889


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcccccccccc--cccccccceeEEE
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDKNELTMEWA--FFEPSGGAGAVAM  175 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~~~~~~~~~--~~~~~~GDGAaA~  175 (245)
                      .|..+|+|.+.|+++|...|.+|.+  +.+|+-+....-...           .+++  +...+.  ...++.|.|+.++
T Consensus       169 ~vdtaCSSsLvAvhlA~~sL~~Ge~--d~alaGgv~l~~~p~~~~~~~~~g~ls~~g--~c~~fd~~adG~v~geG~g~v  244 (1061)
T COG3321         169 TVDTACSSSLVAVHLACQSLRLGEC--DLALAGGVNLVLSPESSYLFSAGGMLSPDG--RCKAFDADADGYVRGEGAGVV  244 (1061)
T ss_pred             cccchhhHHHHHHHHHHHHHHcCCC--CEEEecceEeccCCcceeeeecccCcCCCC--cceecccCCCCEEEeeeEEEE
Confidence            9999999999999999999999977  999988886652221           1122  221111  1245789999999


Q ss_pred             EecC
Q psy2407         176 LISD  179 (245)
Q Consensus       176 ll~~  179 (245)
                      +|.+
T Consensus       245 vLKr  248 (1061)
T COG3321         245 VLKR  248 (1061)
T ss_pred             EEEE
Confidence            9986

>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=98.56  E-value=9.8e-07  Score=80.49  Aligned_cols=171  Identities=15%  Similarity=0.025  Sum_probs=103.8

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCCh-----HHHh--h---cc-------ceeeeecCCCCCHHHHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLDT-----VRFE--N---LL-------MQQKSVSLPYEDPVSFAINAAAPL   62 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~~-----~~~~--~---~G-------i~~r~~~~~~e~~~~la~~Aa~~a   62 (245)
                      ++|.|.|+|...|--. +.+++.+.+  |.+.     ..+.  .   .|       +..+.....-.....|+..|+++|
T Consensus         6 ~rVvITGiG~vsp~G~-~~e~~w~aL~~G~sg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~r~~~~a~~Aa~~A   84 (398)
T PRK06519          6 NDVVITGIGLVSSLGE-GLDAHWNALSAGRPQPNVDTETFAPYPVHPLPEIDWSQQIPKRGDQRQMETWQRLGTYAAGLA   84 (398)
T ss_pred             CCEEEEcceEECCCCC-CHHHHHHHHHcCCCCCCCCcccccCcCcccccccChhhcCCchhhhhccCHHHHHHHHHHHHH
Confidence            3689999999999864 555555432  2221     1000  0   01       101100000122456899999999


Q ss_pred             HHhcCCCCcC-----CcCEEEEEeccCCC-----------------------------C--------CC-cHHHHHHHHc
Q psy2407          63 IDNLSNIDKN-----SIELIITCSESGID-----------------------------F--------GK-SMSTYIHHYL   99 (245)
Q Consensus        63 L~~a~g~~~~-----dId~li~~t~~~~~-----------------------------~--------~p-~~a~~l~~~L   99 (245)
                      |+++ |++..     ++.. +++|..+..                             .        .| ..+..|...+
T Consensus        85 l~dA-Gl~~~~~~~~r~Gv-ivGt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~n~~a~~is~~~  162 (398)
T PRK06519         85 LDDA-GIKGNEELLSTMDM-IVAAGGGERDIAVDTAILNEARKRNDRGVLLNERLMTELRPTLFLAQLSNLLAGNISIVH  162 (398)
T ss_pred             HHHc-CCCCCCCCccceEE-EEEeCCCchhHHHhhhhhhcccchhHHHHHHHhcCCCccChhhhhhhhhhHHHHHHHHHh
Confidence            9997 98543     3433 444433210                             0        11 3567788889


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc--------cCcccccccc-cc-----ccc
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV--------TEDKNELTME-WA-----FFE  165 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~--------~~~~~~~~~~-~~-----~~~  165 (245)
                      |+.  -+.+.+..+|+|++.||..|.++|++|.+  +.+||.++|......        ..-......+ +.     -..
T Consensus       163 gl~--Gp~~ti~~acaSg~~Ai~~A~~~I~~G~~--d~~lvGG~d~~~~~~~~~~~~~~~~ls~~~~~p~~d~~~~~r~G  238 (398)
T PRK06519        163 KVT--GSSRTFMGEESAGVSAIEIAFARIASGQS--DHALVGGAYNAERPDMLLLYELGGLLLKGGWAPVWSRGGEDGGG  238 (398)
T ss_pred             CCC--CccccccCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHcCccCCCCCCchhccCccCCCC
Confidence            994  37889999999999999999999999977  999999998732210        0000000001 00     013


Q ss_pred             ccccceeEEEEecC
Q psy2407         166 PSGGAGAVAMLISD  179 (245)
Q Consensus       166 ~~~GDGAaA~ll~~  179 (245)
                      ++.|+||++++|++
T Consensus       239 ~v~GEGAa~lvLE~  252 (398)
T PRK06519        239 FILGSGGAFLVLES  252 (398)
T ss_pred             eeeeceEEEEEEee
Confidence            56899999999986

>PRK07937 lipid-transfer protein; Provisional

Probab=98.51  E-value=7.3e-07  Score=80.05  Aligned_cols=91  Identities=18%  Similarity=0.050  Sum_probs=67.0

Q ss_pred             CCH-HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCC--cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          49 EDP-VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGK--SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        49 e~~-~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p--~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .+. .+|+.+|+++||+++ |++++|||.++.++.  +....  .....+...+|+.+..+...+.   +++..++..|.
T Consensus        21 ~~~~~el~~eA~~~Al~DA-gl~~~dID~~~~~~~--~~~~~~~~~~~~~~~~~G~~~~~~~~~v~---~~g~~a~~~A~   94 (352)
T PRK07937         21 TTNGVEMLMPCFAELYAEL-GITKSDIGFWCSGSS--DYLAGRAFSFISAIDSIGAVPPINESHVE---MDAAWALYEAW   94 (352)
T ss_pred             CCcHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEcc--ccccccccchhhHHhhccCCCCCceEEec---CcHHHHHHHHH
Confidence            444 899999999999997 999999998864322  22211  1123455668874344444444   35778999999


Q ss_pred             HHHhcCCCCCCeEEEEEecccc
Q psy2407         126 NFILSKVSPGAKALVIATDISR  147 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s  147 (245)
                      ..|++|.+  ++|||++.|+++
T Consensus        95 ~aI~sG~~--d~VLv~g~~k~~  114 (352)
T PRK07937         95 VKLLTGEV--DTALVYGFGKSS  114 (352)
T ss_pred             HHHhcCCC--CEEEEEEecccC
Confidence            99999988  999999999764

>PF07451 SpoVAD: Stage V sporulation protein AD (SpoVAD); InterPro: IPR010894 This family contains the bacterial stage V sporulation protein AD (SpoVAD), which is approximately 340 residues long

Probab=98.41  E-value=2.3e-05  Score=67.83  Aligned_cols=88  Identities=14%  Similarity=0.192  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhc
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILS  130 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~s  130 (245)
                      ...|..+|++.||+++ ++.++|||.++-+--.. +.  ..+++.++.|++    |.+.+=.+|+++..+|.+|..++.+
T Consensus        51 E~~m~~~A~~~al~Ka-~l~~~dId~~~aGDLln-Q~--i~s~f~ar~l~i----Pf~GlygACST~~e~l~laa~~vdg  122 (329)
T PF07451_consen   51 ESKMQKEAVELALKKA-GLKKEDIDYLFAGDLLN-QI--ISSSFAARDLGI----PFLGLYGACSTMMESLALAAMLVDG  122 (329)
T ss_dssp             HHHHHHHHHHHHHHHT-T--GGG-SEEEEEETTC-CC--CHHHHHHHHHT------EEEB--CCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHc-CCCHHHCeEEEehhhhh-hh--HHHHHHHHhcCC----CccchhhHHHHHHHHHHHHHHHHhC
Confidence            4678999999999997 99999999998664432 22  347788999998    4678889999999999999999999


Q ss_pred             CCCCCCeEEEEEeccccc
Q psy2407         131 KVSPGAKALVIATDISRF  148 (245)
Q Consensus       131 g~~~~~~aLVv~~e~~s~  148 (245)
                      |..  +++|+.++-....
T Consensus       123 g~a--~~vla~tSSH~~t  138 (329)
T PF07451_consen  123 GFA--DYVLAATSSHFAT  138 (329)
T ss_dssp             TS---SEEEEEEEE-CCH
T ss_pred             CCc--ceEEEEeccccch
Confidence            977  9999998876643

This is one of six proteins encoded by the spoVA operon, which is transcribed exclusively in the forespore at about the time of dipicolinic acid (DPA) synthesis in the mother cell. The functions of the proteins encoded by the spoVA operon are unknown, but it has been suggested they are involved in DPA transport during sporulation [].; PDB: 3LMA_D 3LM6_A.

>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA

Probab=98.41  E-value=8.9e-06  Score=88.29  Aligned_cols=83  Identities=17%  Similarity=0.111  Sum_probs=62.3

Q ss_pred             HHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCccccccc
Q psy2407          91 MSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTM  159 (245)
Q Consensus        91 ~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~  159 (245)
                      .+.+|...|||+  -+.+.|..+|+|++.||++|.+.|++|.+  +.+|+.+++.....           +..++  +..
T Consensus       185 ~A~RIS~~f~L~--Gps~tVdtACsSSL~Al~~A~~~L~~G~~--D~alvGGv~~~~~p~~~~~fs~~~~lS~~g--~cr  258 (2582)
T TIGR02813       185 ISGRIANRFDLG--GMNCVVDAACAGSLAAIRMALSELLEGRS--EMMITGGVCTDNSPFMYMSFSKTPAFTTNE--DIQ  258 (2582)
T ss_pred             HHHHHHHHhCCC--CCcccccchhHHHHHHHHHHHHHHHcCCC--CEEEEecceeeCCHHHHHHHHhccCcCCCC--Ccc
Confidence            477889999994  37889999999999999999999999977  99999998764221           11111  111


Q ss_pred             cccc--ccccccceeEEEEecC
Q psy2407         160 EWAF--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       160 ~~~~--~~~~~GDGAaA~ll~~  179 (245)
                      ++..  ..++.|+|+++++|.+
T Consensus       259 pFD~~adG~v~GEGag~vvLkr  280 (2582)
T TIGR02813       259 PFDIDSKGMMIGEGIGMMALKR  280 (2582)
T ss_pred             CCCCCCCcccccceEEEEEeCc
Confidence            2211  2467999999999986

Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.

>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=98.22  E-value=5.2e-05  Score=69.31  Aligned_cols=126  Identities=15%  Similarity=0.129  Sum_probs=84.4

Q ss_pred             CHHHHHHHHHHHHHHhcCCCC-cCCcC---EEEEEeccCC----------------------CC----CC-cHHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNID-KNSIE---LIITCSESGI----------------------DF----GK-SMSTYIHHY   98 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~-~~dId---~li~~t~~~~----------------------~~----~p-~~a~~l~~~   98 (245)
                      ....++..|+.+||+++ |++ ..+.+   .+++++..+.                      +.    ++ ..+..++..
T Consensus        70 ~~~~~a~~Aa~eAl~dA-gl~~~~~~~~r~gv~iGsg~gg~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~vs~~  148 (412)
T COG0304          70 RFSQLAVVAAVEALEDA-GLDNELNVDMRVGVAIGSGIGGLEDIEFDLDALLLEGLRKRISPFLVPKMLPNLAAGNVAIV  148 (412)
T ss_pred             HHHHHHHHHHHHHHHHc-CCCcccccCccEEEEEeccCCCcchhhhHHHHHHhcCCccCcCchhhhhhccchHHHHHHHH
Confidence            46789999999999997 997 33332   1223332211                      00    12 346677888


Q ss_pred             cCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------c-c-Ccccccc-ccccc-
Q psy2407          99 LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------V-T-EDKNELT-MEWAF-  163 (245)
Q Consensus        99 LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~-~-~~~~~~~-~~~~~-  163 (245)
                      +|+.  -+.+.+..+|+++..++..|.++|+.|..  +.+|+.++|.. +..          + . .++|.+. .|+.. 
T Consensus       149 ~g~~--G~~~~~~tACatg~~AIg~A~~~I~~G~a--d~~iaGG~e~~i~~~~i~gF~am~Alst~nd~p~~asrPfd~~  224 (412)
T COG0304         149 FGLK--GPNYTPVTACATGAHAIGDAVRLIRLGKA--DVVIAGGAEAAITPLGIAGFEAMRALSTRNDDPEKASRPFDKN  224 (412)
T ss_pred             hCCC--CCcCChhhhHHhHHHHHHHHHHHHHcCCC--CEEEEcccccccCHHHHHHHHHHHHhccCCCCccccCCCCCCC
Confidence            9984  47788999999999999999999999976  99999999772 111          0 0 1111111 12211 


Q ss_pred             -ccccccceeEEEEecCC
Q psy2407         164 -FEPSGGAGAVAMLISDK  180 (245)
Q Consensus       164 -~~~~~GDGAaA~ll~~~  180 (245)
                       ..+++|.||+++||++.
T Consensus       225 RdGfv~gEGag~lVLE~~  242 (412)
T COG0304         225 RDGFVIGEGAGALVLEEL  242 (412)
T ss_pred             CCCEEEecceeEEEecCh
Confidence             13679999999999863

>KOG1391|consensus

Probab=98.03  E-value=1.2e-05  Score=68.00  Aligned_cols=98  Identities=13%  Similarity=0.129  Sum_probs=80.1

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc----CCCCCcceeeecCcchhHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL----GLNRNCRLFELKQACYSCTAGL  121 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L----Gl~~~~~~~dv~~~C~~~~~aL  121 (245)
                      ..+.+..||.+.|++.||+.+ ++.++.+|.||++.....   .+-+.++.+..    |.|...+++.++.=|.|+++++
T Consensus        23 LKg~~aTdL~~~AakAAL~aa-~v~~e~VD~VI~GNV~aS---SsDgIYl~RHvGL~~GvP~e~pALtiNRLCGSGFQsi   98 (396)
T KOG1391|consen   23 LKGLSATDLGVVAAKAALKAA-NVGAEAVDHVIMGNVLAS---SSDGIYLARHVGLRVGVPKETPALTINRLCGSGFQSI   98 (396)
T ss_pred             ccCcchhhHHHHHHHHHHhhc-CCChhhcceEEEeeeeec---cCCceEeeeccccccCCcCccCceeehhhhcccHHHH
Confidence            357889999999999999997 999999999999865421   11233444544    5556688999999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         122 QMAINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       122 ~~A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ..+.+-|.-|..  +.+|.-+.|++|..
T Consensus        99 VNgaQ~I~vgea--~ivL~GGtEnMSq~  124 (396)
T KOG1391|consen   99 VNGAQEICVGEA--EIVLCGGTENMSQA  124 (396)
T ss_pred             HhhHHHhhcCcc--eEEEecCccccccC
Confidence            999999999966  89999999999864

>KOG1392|consensus

Probab=97.87  E-value=1.1e-05  Score=69.18  Aligned_cols=99  Identities=12%  Similarity=0.142  Sum_probs=89.1

Q ss_pred             CCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHH
Q psy2407          48 YEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        48 ~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      +.-+.||+.+|...+|++. .++.+.||.||++|...+....++++..+-..|++...|+..|..+|.|.-.|+-....+
T Consensus        63 dlmphdlar~al~~ll~kt-~lpke~~dyii~gtviqevktsniareaal~agfsdktpahtvtmacissn~amttgmgl  141 (465)
T KOG1392|consen   63 DLMPHDLAREALKALLEKT-KLPKEQLDYIICGTVIQEVKTSNIAREAALLAGFSDKTPAHTVTMACISSNVAMTTGMGL  141 (465)
T ss_pred             hhchhHHHHHHHHHHHHhc-cCCHHHhceeeehhhHHHHhcchHHHHHHHhcCCCCCCccceeeeehhccchhhhcccee
Confidence            4567899999999999996 999999999999998776666788999888999987799999999999999999999999


Q ss_pred             HhcCCCCCCeEEEEEecccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |+.|.+  +.++.-+.|.+|+.
T Consensus       142 iatg~~--dvivaggvelmsdv  161 (465)
T KOG1392|consen  142 IATGNA--DVIVAGGVELMSDV  161 (465)
T ss_pred             EeeCCc--CEEEEcceeecccC
Confidence            999977  98999999999875

>KOG1389|consensus

Probab=97.79  E-value=6.4e-05  Score=65.22  Aligned_cols=101  Identities=14%  Similarity=0.118  Sum_probs=85.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ..+..+-+|...+.+..+++. +++|+.|+-|+++++.........++..+-..|+|..+|...++.-|+||+++.....
T Consensus        56 fkdt~pDeLl~~vl~a~ie~t-~~dp~~igdi~vG~vL~pg~ga~e~R~a~~~ag~P~tvpv~tvNRqCsSGLqaVadiA  134 (435)
T KOG1389|consen   56 FKDTRPDELLAAVLRAVIEKT-NLDPSLIGDIVVGTVLAPGSGASECRMAAFYAGFPETVPVRTVNRQCSSGLQAVADIA  134 (435)
T ss_pred             cccCChHHHHHHHHHHHHhhc-CCCHHHhcceeeeeccCCCcchHHHHHHHHHcCCCcccchhhhhhhhhhHHHHHHHHH
Confidence            357778899999999999996 9999999999999987543333334444556799877888889999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEecccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .-|++|.+  +-.|-.+.|.++..
T Consensus       135 ~~Ir~G~y--dIGla~GvESMt~~  156 (435)
T KOG1389|consen  135 AKIRAGFY--DIGLAAGVESMTTN  156 (435)
T ss_pred             HHHhcCce--eeecccchhhhccc
Confidence            99999988  99999999999765

>PF08540 HMG_CoA_synt_C: Hydroxymethylglutaryl-coenzyme A synthase C terminal; InterPro: IPR013746 Synonym(s): 3-hydroxy-3-methylglutaryl-coenzyme A synthase, HMG-CoA synthase

Probab=97.77  E-value=2.3e-05  Score=68.00  Aligned_cols=50  Identities=32%  Similarity=0.463  Sum_probs=36.0

Q ss_pred             eeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHHhc
Q psy2407         187 DIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKRVQ  236 (245)
Q Consensus       187 ~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~  236 (245)
                      +-...|+|..+++|||+|....  |.|||++|+.||+++++.+|+.|+++..
T Consensus         4 d~~~~~~~m~~~yDFyKP~~~seyP~VDG~~S~~~Yl~ald~~y~~y~~k~~   55 (282)
T PF08540_consen    4 DRGLRGSHMEHVYDFYKPDLSSEYPVVDGKLSIQCYLDALDKCYKRYKEKVE   55 (282)
T ss_dssp             ETTEEEEEE----SEE-BTTT-SS-EE-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCceeehhhchhccCCCCCCCCcEEchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334578888999999998654  6899999999999999999999998863

Hydroxymethylglutaryl-CoA synthase (2.3.3.10 from EC) catalyses the condensation of acetyl-CoA with acetoacetyl-CoA to produce HMG-CoA and CoA, the second reaction in the mevalonate-dependent isoprenoid biosynthesis pathway. HMG-CoA synthase contains an important catalytic cysteine residue that acts as a nucleophile in the first step of the reaction: the acetylation of the enzyme by acetyl-CoA (its first substrate) to produce an acetyl-enzyme thioester, releasing the reduced coenzyme A. The subsequent nucleophilic attack on acetoacetyl-CoA (its second substrate) leads to the formation of HMG-CoA []. HMG-CoA synthase occurs in eukaryotes, archaea and certain bacteria []. In vertebrates, there are two isozymes located in different subcellular compartments: a cytosolic form that is the starting point of the mevalonate pathway (leads to cholesterol and other sterolic and isoprenoid compounds), and a mitochondrial form responsible for ketone body biosynthesis. HMG-CoA is also found in other eukaryotes such as insects, plants and fungi []. In bacteria, isoprenoid precursors are generally synthesised via an alternative, non-mevalonate pathway, however a number of Gram-positive pathogens utilise a mevalonate pathway involving HMG-CoA synthase that is parallel to that found in eukaryotes [, ]. This entry represents the C-terminal domain of HMG-CoA synthase enzymes from both eukaryotes and prokaryotes.; GO: 0004421 hydroxymethylglutaryl-CoA synthase activity, 0008299 isoprenoid biosynthetic process; PDB: 1TXT_D 1TVZ_A 1X9E_B 2HDB_B 3V4X_A 3V4N_C 2P8U_A 2FA0_A 2F9A_A 2F82_A ....

>KOG1394|consensus

Probab=97.64  E-value=0.0011  Score=58.65  Aligned_cols=174  Identities=14%  Similarity=0.081  Sum_probs=106.9

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc----CCCh---HHHh----hc-cceee-ee---cCC-C----CCHHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR----KLDT---VRFE----NL-LMQQK-SV---SLP-Y----EDPVSFAINAA   59 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~----~~~~---~~~~----~~-Gi~~r-~~---~~~-~----e~~~~la~~Aa   59 (245)
                      |..|.|.|+|..-|-.+-....|.+.+    |++.   ..++    ++ |.-.| ..   +.. +    -+...|+..|+
T Consensus        23 ~rRVVITGmG~VTplG~~v~~~w~~Ll~GesGI~~l~~~d~k~~p~~v~g~Ip~f~~e~~~s~~~~r~ms~~~~~al~aa  102 (440)
T KOG1394|consen   23 MRRVVITGMGAVTPLGNGVHTSWRNLLSGESGISSLEGPDYKSIPFTVAGKIPRFSVEDYVSKGDERRMSKFTKLALTAA  102 (440)
T ss_pred             ceeEEEeccceeecCCCChHHHHHHhhccccCcccccccccccCcchheeeccccccccccchhhhhhhhHHHHHHHHHH
Confidence            567999999999998764444444332    2211   1111    11 21111 11   000 1    13578999999


Q ss_pred             HHHHHhcCCCCcC---CcC----EEEEEeccC---------------------CCCCC-----cHHHHHHHHcCCCCCcc
Q psy2407          60 APLIDNLSNIDKN---SIE----LIITCSESG---------------------IDFGK-----SMSTYIHHYLGLNRNCR  106 (245)
Q Consensus        60 ~~aL~~a~g~~~~---dId----~li~~t~~~---------------------~~~~p-----~~a~~l~~~LGl~~~~~  106 (245)
                      ++||+++ ++.+.   +.|    .|.+++.-+                     +++.|     -.+.+|.-++|+.  -+
T Consensus       103 ~eAL~da-~~~~~~~~e~dk~~~GV~iGtgmg~l~~i~e~a~~~~~~g~rrvsPffVPkil~NM~ag~vsm~~gl~--Gp  179 (440)
T KOG1394|consen  103 EEALKDA-GLLDVNLSEEDKEKTGVLIGTGMGDLEDIYETAQNLSEKGYRRVSPFFVPKILTNMAAGYVSMKYGLR--GP  179 (440)
T ss_pred             HHHHHhc-CCCCcccchhhhhhhceEeccccccHHHHHHHHHHHHHhcccccCccccchhhcccccchhhhhhcCc--CC
Confidence            9999997 87765   222    233333211                     12333     2356888899994  47


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-------------Ccccc-ccccccc--ccccccc
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-------------EDKNE-LTMEWAF--FEPSGGA  170 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-------------~~~~~-~~~~~~~--~~~~~GD  170 (245)
                      ...++.+|+.+..++--|.++|+.|..  +..|.-++|.+-..+.             .++|. -..||.-  ..+++|.
T Consensus       180 nhsvSTACATg~h~igda~n~Ir~Gda--DvmlAGgsE~~I~PlslaGF~r~RALSt~nd~P~~aSRPfD~~RdGFVmGE  257 (440)
T KOG1394|consen  180 NHSVSTACATGNHCIGDAFNFIRLGDA--DVMLAGGSEACINPLSLAGFSRARALSTRNDNPQKASRPFDKKRDGFVMGE  257 (440)
T ss_pred             chhhHhhhhhccchHHHHHHHHHhCcc--ceeeccCcceeecchhhhhHHHHHHhhhcCCCccccCCCCccCCCceeecc
Confidence            788999999999999999999999966  8888888887633321             11110 0112221  1367999


Q ss_pred             eeEEEEecC
Q psy2407         171 GAVAMLISD  179 (245)
Q Consensus       171 GAaA~ll~~  179 (245)
                      ||+.+++++
T Consensus       258 GagvlvlEe  266 (440)
T KOG1394|consen  258 GAGVLVLEE  266 (440)
T ss_pred             ceeEEehHh
Confidence            999999985

>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2

Probab=96.26  E-value=0.0064  Score=43.35  Aligned_cols=73  Identities=19%  Similarity=0.243  Sum_probs=43.6

Q ss_pred             HHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHHHhcCCC-CCCe
Q psy2407          63 IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINFILSKVS-PGAK  137 (245)
Q Consensus        63 L~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~i~sg~~-~~~~  137 (245)
                      |+++ |++++|||.++....+     ......+.+.+|+++.....++    +.+|++-..+|..+   ++.|.. ++++
T Consensus         1 L~~~-g~~~~did~~i~hq~~-----~~~~~~~~~~lgi~~~~~~~~~~~~Gn~~sa~~~~~L~~~---~~~g~~~~Gd~   71 (90)
T PF08541_consen    1 LERA-GLSPDDIDHFIPHQAS-----KKILDSIAKRLGIPPERFPDNLAEYGNTGSASIPINLADA---LEEGRIKPGDR   71 (90)
T ss_dssp             HHHT-T--GGGESEEEE-SSS-----HHHHHHHHHHHTS-GGGBE-THHHH-B-GGGHHHHHHHHH---HHTTSSCTTEE
T ss_pred             Cccc-cCCHHHCCEEEeCCCC-----HHHHHHHHHHcCCcHHHHHHHHhccCcchhhhHHHHHHHH---HHcCCCCCCCE
Confidence            6786 9999999999975433     3455668899999755433333    24666666666554   443322 5578


Q ss_pred             EEEEEec
Q psy2407         138 ALVIATD  144 (245)
Q Consensus       138 aLVv~~e  144 (245)
                      +|+++.-
T Consensus        72 vl~~~~G   78 (90)
T PF08541_consen   72 VLLVGFG   78 (90)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            8888653

3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....

>PF13723 Ketoacyl-synt_2: Beta-ketoacyl synthase, N-terminal domain

Probab=95.40  E-value=0.61  Score=39.14  Aligned_cols=115  Identities=15%  Similarity=0.005  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCC---------------CCC---------cHHHHHHHHcCCCCCcc
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGID---------------FGK---------SMSTYIHHYLGLNRNCR  106 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~---------------~~p---------~~a~~l~~~LGl~~~~~  106 (245)
                      ...|++.++.+++.+.     +++|.+|++|..++.               ..|         ..+.++.-..|.  ..+
T Consensus        34 ~~rla~~~a~~~~~~~-----~~~d~~VfaS~~Gel~~t~~ll~~l~~~~~lSPT~Fs~SVHNA~aG~~sI~~~~--~~~  106 (218)
T PF13723_consen   34 LSRLALEAALECLAED-----EQPDAIVFASRHGELERTFKLLEALAEEEELSPTAFSQSVHNAAAGYWSIATKN--TGP  106 (218)
T ss_pred             HHHHHHHHHHHHHhcc-----CCCCcEEEEeCCCcHHHHHHHHHHHHhCCCcCccchhhhhhhHHHHHHHHHhCC--CCc
Confidence            6778888888888652     467789999876541               122         223333333443  356


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCCC
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE  182 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~~  182 (245)
                      ...+..+=.++..||.-|..+++.| .  +.||||+.|..........  .  +   ......--|.|++|+++..
T Consensus       107 ~tal~a~~~sf~~aLleA~~~l~~~-~--~~VLlv~~De~~p~~y~~~--~--~---~~~~~~~~A~al~L~~~~~  172 (218)
T PF13723_consen  107 NTALAAGEDSFEAALLEAAAQLAEG-A--EPVLLVCYDEPLPEPYQEF--R--P---ERDPPFPYALALVLSPGDS  172 (218)
T ss_pred             eEEEecCcchHHHHHHHHHHHHHcC-C--CCEEEEEeCCCCChhhhhc--c--c---ccCCCcCEEEEEEecCCCC
Confidence            6778888899999999999999998 6  8999999998754321110  0  0   0112345788889987653

>TIGR00748 HMG_CoA_syn_Arc hydroxymethylglutaryl-CoA synthase, putative

Probab=95.26  E-value=0.055  Score=48.49  Aligned_cols=82  Identities=13%  Similarity=0.237  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee-----eec-CcchhHHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF-----ELK-QACYSCTAGLQMA  124 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~-----dv~-~~C~~~~~aL~~A  124 (245)
                      ....+.++++++|+++ |++++|||.+++....     +.+-..+.+.||++++....     +++ .++++...+|..+
T Consensus       206 ~~~~~~~~~~~~L~~~-gl~~~did~~i~Hq~~-----~~~~~~~~~~lgl~~ek~~~~~~~~~~GNt~sAsipl~L~~~  279 (345)
T TIGR00748       206 YFHHVVTAAKGLMEKL-GLTPEDFDYAVFHQPN-----GKFYLVAARMLGFPKEQVKPGLLTPRIGNTYSGATPVGLSAV  279 (345)
T ss_pred             HHHHHHHHHHHHHHHc-CCCHHHcCEEEeCCCC-----hHHHHHHHHHcCCCHHHeeccccccccCchhhhHHHHHHHHH
Confidence            4566778899999996 9999999999864332     34556689999996432221     453 4788888888766


Q ss_pred             HHHHhcCCCCCCeEEEEE
Q psy2407         125 INFILSKVSPGAKALVIA  142 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~  142 (245)
                      ...++    +++++|+++
T Consensus       280 ~~~~~----~Gd~vll~~  293 (345)
T TIGR00748       280 LDIAE----PGDRILAVS  293 (345)
T ss_pred             HHhcC----CCCEEEEEE
Confidence            55333    446777664

Thus, although there is no experimental evidence supporting this name, the bioinformatics-based conclusion appears to be sound.

>PRK06816 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=95.11  E-value=0.11  Score=47.18  Aligned_cols=85  Identities=18%  Similarity=0.217  Sum_probs=56.4

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc-----CCCCCcceee---ec-CcchhHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL-----GLNRNCRLFE---LK-QACYSCTAGLQM  123 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L-----Gl~~~~~~~d---v~-~~C~~~~~aL~~  123 (245)
                      +...++++++|++. |++++|||.++....     .+..-..++++|     |++++.....   ++ .+|++...+|..
T Consensus       272 ~~~~~~i~~~L~~~-gl~~~DId~~v~Hq~-----n~~~~~~v~~~l~~~~~gl~~~k~~~~~~~~GNt~sAsipi~L~~  345 (378)
T PRK06816        272 VYTIKPLLELVDKR-NLDPDDIDYFLPHYS-----SEYFREKIVELLAKAGFMIPEEKWFTNLATVGNTGSASIYIMLDE  345 (378)
T ss_pred             HHHHHHHHHHHHHc-CCChhhCCEEeeCcc-----cHHHHHHHHHHHHhccCCCChhheEEeccccccccchHHHHHHHH
Confidence            45578888999996 999999999985433     334455667766     8864432222   33 477777778865


Q ss_pred             HHHHHhcCCC-CCCeEEEEEeccc
Q psy2407         124 AINFILSKVS-PGAKALVIATDIS  146 (245)
Q Consensus       124 A~~~i~sg~~-~~~~aLVv~~e~~  146 (245)
                      +   ++.|.. +++++++++.+..
T Consensus       346 a---~~~g~~~~Gd~vl~~~~~s~  366 (378)
T PRK06816        346 L---LNSGRLKPGQKILCFVPESG  366 (378)
T ss_pred             H---HHcCCCCCCCEEEEEEeccc
Confidence            5   344322 5688888877654

>PRK06147 3-oxoacyl-(acyl carrier protein) synthase; Validated

Probab=95.01  E-value=0.074  Score=47.76  Aligned_cols=91  Identities=12%  Similarity=-0.021  Sum_probs=57.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC-CCcce----eeec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN-RNCRL----FELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~-~~~~~----~dv~-~~C~~~~~aL~~A~  125 (245)
                      +=..++.++||+++ |++++|||.|+.. +.++ +.....+..+.+.+|-. ...+.    -.++ .+.+++...+..+.
T Consensus       234 ~gl~~ai~~AL~~a-gl~~~dId~v~ah~~gt~-~~d~~e~~A~~~~f~~~~~~~~~~~~k~~~Gh~~aAaG~~~~~~a~  311 (348)
T PRK06147        234 DGLTQAIRAALAEA-GCGLEDMDYRIADLNGEQ-YRFKEAALAEMRLFRVRKEFFDLWHPAECIGEIGAAIGPALLGVAL  311 (348)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEcCCCCCc-cchHHHHHHHHHHhhhccCCCceecchHhhcchHHHHHHHHHHHHH
Confidence            34568899999997 9999999998843 3332 22222344445555531 11222    2233 35566666666677


Q ss_pred             HHHhcCCCCCCeEEEEEecc
Q psy2407         126 NFILSKVSPGAKALVIATDI  145 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~  145 (245)
                      ..++.|..|+.++||.+++-
T Consensus       312 ~~~~~g~~~g~~~L~~s~~d  331 (348)
T PRK06147        312 AASRKGYGPGPNVLCHLSDD  331 (348)
T ss_pred             HHHHcCcCCCCcEEEEecCC
Confidence            77778766778899987754

>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=94.67  E-value=0.14  Score=45.21  Aligned_cols=81  Identities=20%  Similarity=0.229  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---cC-cchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---KQ-ACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~~-~C~~~~~aL~~A~~~i~  129 (245)
                      ...++.+++|+++ |++++|||.++....+     ...-..+++.||++++.....+   ++ +|++...+|.   .+++
T Consensus       231 ~~~~~i~~~L~~~-gl~~~did~~~~H~~~-----~~~~~~i~~~l~l~~e~~~~~~~~~Gn~~sas~~~~L~---~~~~  301 (329)
T PRK07204        231 YLMKFIDKLLMDA-GYTLADIDLIVPHQAS-----GPAMRLIRKKLGVDEERFVTIFEDHGNMIAASIPVALF---EAIK  301 (329)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEeCCCC-----HHHHHHHHHHcCCCHHHhhhhHhhhCcHHHHHHHHHHH---HHHH
Confidence            4557889999997 9999999999864333     2345688999999654332222   22 4444444443   3455


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       302 ~g~~~~Gd~vll~~~  316 (329)
T PRK07204        302 QKKVQRGNKILLLGT  316 (329)
T ss_pred             cCCCCCCCEEEEEEE
Confidence            5432 5577777753

>CHL00203 fabH 3-oxoacyl-acyl-carrier-protein synthase 3; Provisional

Probab=94.59  E-value=0.14  Score=45.39  Aligned_cols=81  Identities=16%  Similarity=0.164  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++++++|+++ |++++|||++++....     +..-..+++.||++++.....+   + .+|++...+|..   +++
T Consensus       227 ~~~~~i~~~L~~~-g~~~~did~~~~hq~~-----~~~~~~~~~~lgl~~~k~~~~l~~~Gn~~sasi~~~L~~---~~~  297 (326)
T CHL00203        227 QVPAVIIKCLNAL-NISIDEVDWFILHQAN-----KRILEAIANRLSVPNSKMITNLEKYGNTSAASIPLALDE---AIQ  297 (326)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCHHHhhhHHHhhCcHHHHHHHHHHHH---HHH
Confidence            3555788999996 9999999999864332     3456678999999754333333   2 245555555543   345


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       298 ~g~~~~Gd~vll~~~  312 (326)
T CHL00203        298 NNKIQPGQIIVLSGF  312 (326)
T ss_pred             hCCCCCCCEEEEEEE
Confidence            5432 5577877764

>PRK12879 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=94.26  E-value=0.2  Score=44.17  Aligned_cols=81  Identities=14%  Similarity=0.193  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++.+++|+++ |++++|||.+++...     .+..-..+++.||+++......+   + .+|++...+|.   .+++
T Consensus       226 ~~~~~i~~~L~~~-g~~~~did~~~~h~~-----~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~sas~~~~L~---~~~~  296 (325)
T PRK12879        226 TMPKGARQVLEKA-GLTKDDIDWVIPHQA-----NLRIIESLCEKLGIPMEKTLVSVEYYGNTSAATIPLALD---LALE  296 (325)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHhhhhHhhhCchHHHHHHHHHH---HHHH
Confidence            3456788999996 999999999986532     34556688999999644332223   2 24555555554   4455


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       297 ~g~~~~Gd~vll~~~  311 (325)
T PRK12879        297 QGKIKPGDTLLLYGF  311 (325)
T ss_pred             cCCCCCCCEEEEEEE
Confidence            5432 4577777765

>KOG1202|consensus

Probab=94.11  E-value=0.15  Score=52.08  Aligned_cols=126  Identities=17%  Similarity=0.149  Sum_probs=78.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCCC-----CC---------c-HHHHHHHHc----CCCCCcc
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGIDF-----GK---------S-MSTYIHHYL----GLNRNCR  106 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~-----~p---------~-~a~~l~~~L----Gl~~~~~  106 (245)
                      ....|..++.-+|+-++ |+.|.++..    ++++.+++...     .|         . .-++.++++    .+  .-|
T Consensus        86 Pq~RlLLE~t~EAivDa-GiNP~~LRGs~tGv~vg~s~seTs~~~~~dp~t~~Gy~mtgc~raMfaNRiSytFDf--qGP  162 (2376)
T KOG1202|consen   86 PQLRLLLEATWEAIVDA-GINPDDLRGSRTGVFVGVSGSETSGALSQDPDTVNGYSMTGCVRAMFANRISYTFDF--QGP  162 (2376)
T ss_pred             HHHHHHHHHHHHHHHhC-CCChhhcCcccceeEEeecCccccccccCCCccccceeecccHHHHhhcceeEEEec--cCC
Confidence            45789999999999997 999977643    33333222110     11         1 112334443    34  246


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcccccccccccccccccceeEEE
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDKNELTMEWAFFEPSGGAGAVAM  175 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~~~~~~~~~~~~~~~GDGAaA~  175 (245)
                      .|.+..+|+|.+.+|..|.+-+++|++  +.+||-++...-+..           .+++.=+.-...-..+.-.||.+|+
T Consensus       163 S~s~DtacsSsl~al~~a~~~~r~gqc--d~AiVaG~~liLkPt~slQFlRLgmls~dGsCkaFDeagnGY~Rseg~~av  240 (2376)
T KOG1202|consen  163 SFSVDTACSSSLMALQNAFQDIRSGQC--DAAIVAGANLILKPTTSLQFLRLGMLSPDGSCKAFDEAGNGYCRSEGVVAV  240 (2376)
T ss_pred             chhhhhhhHHHHHHHHHHHHhhhccCC--chhhhcccceEeccchhhHHHHhcCcCCCCcccchhccCCceeecCceEEE
Confidence            778889999999999999999999977  999998877543221           1111000000000123467999999


Q ss_pred             EecCC
Q psy2407         176 LISDK  180 (245)
Q Consensus       176 ll~~~  180 (245)
                      ++.+.
T Consensus       241 llqrk  245 (2376)
T KOG1202|consen  241 LLQRK  245 (2376)
T ss_pred             EEehh
Confidence            99875

>PRK09258 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=94.04  E-value=0.24  Score=43.89  Aligned_cols=84  Identities=14%  Similarity=0.196  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i  128 (245)
                      ....++.+++|+++ |++++|||.+++...     .+..-..+.+.||++++.....+   + .++++-..+|..   ++
T Consensus       239 ~~~~~~~~~~L~~~-g~~~~did~~i~H~~-----~~~~~~~~~~~lgl~~~k~~~~~~~~GN~~sas~~~~L~~---~~  309 (338)
T PRK09258        239 ELAVDTWEAFLAQL-GWAVEQVDRVICHQV-----GAAHTRAILKALGIDPEKVFTTFPTLGNMGPASLPITLAM---AA  309 (338)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEecCCC-----CHHHHHHHHHHhCCCHHHceehHhhhCCcHHhHHHHHHHH---HH
Confidence            45566788999996 999999999886433     23455688999999654333232   2 355555555544   34


Q ss_pred             hcCCC-CCCeEEEEEecc
Q psy2407         129 LSKVS-PGAKALVIATDI  145 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~e~  145 (245)
                      +.|.. +++++|+++...
T Consensus       310 ~~g~~~~Gd~vll~~~G~  327 (338)
T PRK09258        310 EEGFLKPGDRVALLGIGS  327 (338)
T ss_pred             HhCCCCCCCEEEEEEech
Confidence            44422 567888877543

>PRK06840 hypothetical protein; Validated

Probab=93.83  E-value=0.27  Score=43.65  Aligned_cols=81  Identities=10%  Similarity=0.072  Sum_probs=50.9

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-ee-eec-CcchhHHHHHHHHHHHHhc
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LF-ELK-QACYSCTAGLQMAINFILS  130 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~-dv~-~~C~~~~~aL~~A~~~i~s  130 (245)
                      ...++.+++|+++ |++++|||.++....     .+..-..+++.||+++... .+ +++ .++++-..+|.   .++++
T Consensus       238 ~~~~~i~~~L~~~-gl~~~did~~~~h~~-----~~~~~~~~~~~Lgl~~~~~~~~~~~Gn~~sas~~~~L~---~~~~~  308 (339)
T PRK06840        238 NFLKVIREALRKS-GYTPKDIDYLAILHM-----KRSAHIALLEGLGLTEEQAIYLDEYGHLGQLDQILSLH---LALEQ  308 (339)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEECCc-----CHHHHHHHHHHcCCCHHHeEeHHhccchhhhhHHHHHH---HHHHc
Confidence            3458889999997 999999999875332     2344467899999964322 11 232 24444444553   44555


Q ss_pred             CCC-CCCeEEEEEe
Q psy2407         131 KVS-PGAKALVIAT  143 (245)
Q Consensus       131 g~~-~~~~aLVv~~  143 (245)
                      |.. +++++|+++.
T Consensus       309 ~~~~~Gd~ill~~~  322 (339)
T PRK06840        309 GKLKDGDLVVLVSA  322 (339)
T ss_pred             CCCCCCCEEEEEEE
Confidence            422 5577777765

>TIGR00747 fabH 3-oxoacyl-(acyl-carrier-protein) synthase III

Probab=93.81  E-value=0.16  Score=44.66  Aligned_cols=82  Identities=12%  Similarity=0.141  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i  128 (245)
                      +...++.+++|+++ |++++|||.+++...     .+..-..+++.||++++.....+   + .++++-+.+|..   ++
T Consensus       219 ~~~~~~~~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lgi~~~k~~~~~~~~Gn~~sas~~~~L~~---~~  289 (318)
T TIGR00747       219 RKMGDVVEETLEAN-GLDPEDIDWFVPHQA-----NLRIIEALAKRLELDMSQVVKTVHKYGNTSAASIPLALDE---LL  289 (318)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHeeehHhhhCCHHHHHHHHHHHH---HH
Confidence            34566788899997 999999999985432     33556788999999643222223   2 355555555544   44


Q ss_pred             hcCCC-CCCeEEEEEe
Q psy2407         129 LSKVS-PGAKALVIAT  143 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~  143 (245)
                      ++|.. +++++|+++.
T Consensus       290 ~~~~~~~Gd~vll~~~  305 (318)
T TIGR00747       290 RTGRIKPGDLLLLVAF  305 (318)
T ss_pred             HcCCCCCCCEEEEEEE
Confidence            44421 4577877765

Active site residues include Cys112, His244 and Asn274 of E. coli FabH. Cys-112 is the site of acyl group attachment.

>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=93.75  E-value=0.29  Score=43.22  Aligned_cols=83  Identities=13%  Similarity=0.150  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINF  127 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~  127 (245)
                      .+...++.+++|+++ |++++|||.++...     ..+..-..+.+.||+++......+   + .++++...+|.   .+
T Consensus       226 ~~~~~~~~~~~L~~~-gl~~~did~~~~h~-----~~~~~~~~~~~~l~l~~~k~~~~l~~~Gn~~sas~~~~L~---~~  296 (326)
T PRK05963        226 VRMMSGASQNVLASA-AMTPQDIDRFFPHQ-----ANARIVDKVCETIGIPRAKAASTLETYGNSSAATIPLSLS---LA  296 (326)
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEeCC-----CCHHHHHHHHHHcCCCHHHhhhhHHhhCcHHHHHHHHHHH---HH
Confidence            345567888999996 99999999988632     234556678999999654333222   2 24444444443   33


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.+.. +++++|+++.
T Consensus       297 ~~~~~~~~Gd~vll~~~  313 (326)
T PRK05963        297 NLEQPLREGERLLFAAA  313 (326)
T ss_pred             HHhCCCCCCCEEEEEEE
Confidence            444322 4578888765

>PLN02326 3-oxoacyl-[acyl-carrier-protein] synthase III

Probab=93.29  E-value=0.38  Score=43.66  Aligned_cols=81  Identities=11%  Similarity=0.113  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++++++|+++ |++++|||.++....     .+.+-..+++.||++++.....+   + .++++-..+|..   +++
T Consensus       281 ~~~~~i~~~L~~~-gl~~~dId~~v~Hq~-----n~~~~~~~~~~Lgl~~ek~~~~l~~~GNt~sAsi~~~L~~---~~~  351 (379)
T PLN02326        281 CVPQVIESALQKA-GLTAESIDWLLLHQA-----NQRIIDAVAQRLGIPPEKVISNLANYGNTSAASIPLALDE---AVR  351 (379)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHcCCCHHHeeecHhhcCcHHHHHHHHHHHH---HHH
Confidence            3446778889996 999999999886433     23445568999999754333333   2 355555556644   345


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       352 ~g~~~~Gd~vll~~~  366 (379)
T PLN02326        352 SGKVKKGDVIATAGF  366 (379)
T ss_pred             cCCCCCCCEEEEEEE
Confidence            4432 4577877754

>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]

Probab=93.27  E-value=0.19  Score=44.69  Aligned_cols=83  Identities=14%  Similarity=0.184  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec----CcchhHHHHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK----QACYSCTAGLQMAIN  126 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~----~~C~~~~~aL~~A~~  126 (245)
                      +..+..++++++|+++ +++++|||.++.     .+....+-..++++||++++.....+.    .+-+|-..+|.   .
T Consensus       221 av~~~~~~~~~~L~~~-~l~~~dId~~vp-----HQan~ri~~~i~~~l~~~~~k~~~~~~~yGNtsaAsiplaL~---~  291 (323)
T COG0332         221 AVRAMPKAIEEVLEKA-GLTPEDIDWFVP-----HQANLRIIEAIAKKLGIPEEKVVVTVDKYGNTSAASIPLALD---E  291 (323)
T ss_pred             HHHHHHHHHHHHHHHc-CCCHHHCCEEcc-----ccccHHHHHHHHHHcCCCHHHHhhHHHHhcccccchHHHHHH---H
Confidence            5678888899999997 999999999984     344446667889999997665555553    23333333443   3


Q ss_pred             HHhcCCC-CCCeEEEEE
Q psy2407         127 FILSKVS-PGAKALVIA  142 (245)
Q Consensus       127 ~i~sg~~-~~~~aLVv~  142 (245)
                      +++.|+. +++.+|+++
T Consensus       292 ~~~~g~ik~Gd~ill~~  308 (323)
T COG0332         292 ALREGRIKPGDLVLLEA  308 (323)
T ss_pred             HhhhCCCCCCCEEEEEe
Confidence            4455544 334555443

>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems

Probab=93.16  E-value=0.35  Score=42.35  Aligned_cols=82  Identities=12%  Similarity=0.174  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---cC-cchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---KQ-ACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~~-~C~~~~~aL~~A~~~i  128 (245)
                      +...++.+++|+++ |++++|||.++....     .+..-..+++.||+++......+   ++ ++++....|.   .++
T Consensus       223 ~~~~~~i~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lgl~~~~~~~~~~~~Gn~~sas~~~~L~---~~~  293 (320)
T cd00830         223 RLMPESIEEALEKA-GLTPDDIDWFVPHQA-----NLRIIEAVAKRLGLPEEKVVVNLDRYGNTSAASIPLALD---EAI  293 (320)
T ss_pred             HhhHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHhCCCHHHhhhhHHhhCcHHHHHHHHHHH---HHH
Confidence            45567888999997 999999999886533     33455678999999644332223   22 3444444443   344


Q ss_pred             hcCCC-CCCeEEEEEe
Q psy2407         129 LSKVS-PGAKALVIAT  143 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~  143 (245)
                      +.|.. +++++|+++.
T Consensus       294 ~~~~~~~G~~vll~~~  309 (320)
T cd00830         294 EEGKLKKGDLVLLLGF  309 (320)
T ss_pred             HcCCCCCCCEEEEEEE
Confidence            55432 4678888765

It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.

>PRK04262 hypothetical protein; Provisional

Probab=92.81  E-value=0.25  Score=44.18  Aligned_cols=80  Identities=19%  Similarity=0.304  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce--e---eec-CcchhHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--F---ELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~--~---dv~-~~C~~~~~aL~~A~  125 (245)
                      .....++.+++|+++ |++++|||.+++..     ..+.+-..+++.||+++....  +   +++ .++++-..+|..+.
T Consensus       208 ~~~~~~~i~~~L~~~-gl~~~dId~~v~Hq-----~n~~~~~~~~~~Lgl~~ek~~~~~~~~~~GNt~sAsi~~~L~~~~  281 (347)
T PRK04262        208 FKHIISAAKGLMEKL-GLKPSDYDYAVFHQ-----PNGKFPLRVAKMLGFTKEQVKPGLLTPYIGNTYSGSALLGLAAVL  281 (347)
T ss_pred             HHHHHHHHHHHHHHh-CcCHHHhceeecCC-----CchHHHHHHHHHcCCCHHHhhccchhhhhCChHHHHHHHHHHHHH
Confidence            356778899999997 99999999988642     223455678899999654322  1   333 36666666665554


Q ss_pred             HHHhcCCCCCCeEEEE
Q psy2407         126 NFILSKVSPGAKALVI  141 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv  141 (245)
                      .-+  .  +++++|++
T Consensus       282 ~~~--~--~Gd~vll~  293 (347)
T PRK04262        282 DVA--K--PGDRILVV  293 (347)
T ss_pred             HhC--C--CCCEEEEE
Confidence            322  2  44666655

>cd00825 decarbox_cond_enzymes decarboxylating condensing enzymes; Family of enzymes that catalyze the formation of a new carbon-carbon bond by a decarboxylating Claisen-like condensation reaction

Probab=92.61  E-value=0.76  Score=40.33  Aligned_cols=78  Identities=6%  Similarity=-0.067  Sum_probs=48.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc----eeeec-CcchhHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR----LFELK-QACYSCTAGLQMAIN  126 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~----~~dv~-~~C~~~~~aL~~A~~  126 (245)
                      .+...++++++|+++ |++++|||.++...........-....+....+.. ..+    .-.++ .++++++..|..+..
T Consensus       204 ~~~~~~~i~~al~~a-gl~~~did~~~~h~~~~~~~~~~e~~~~~~~~~~~-~~~~~~~~~~~G~~~aas~~~~l~~~~~  281 (332)
T cd00825         204 AEGLARAAKEALAVA-GLTVWDIDYLVAHGTGTPIGDVKELKLLRSEFGDK-SPAVSATKAMTGNLSSAAVVLAVDEAVL  281 (332)
T ss_pred             HHHHHHHHHHHHHHc-CCCHhHCCEEEccCCCCCCCCHHHHHHHHHHhCCC-CceeECCCcccccchhHhHHHHHHHHHH
Confidence            455668999999997 99999999999765543222222222333334321 111    12343 477788888888777


Q ss_pred             HHhcC
Q psy2407         127 FILSK  131 (245)
Q Consensus       127 ~i~sg  131 (245)
                      .++.+
T Consensus       282 ~~~~~  286 (332)
T cd00825         282 MLEHG  286 (332)
T ss_pred             HHhcC
Confidence            76655

Members are involved in the synthesis of fatty acids and polyketides, a diverse group of natural products. Both pathways are an iterative series of additions of small carbon units, usually acetate, to a nascent acyl group. There are 2 classes of decarboxylating condensing enzymes, which can be distinguished by sequence similarity, type of active site residues and type of primer units (acetyl CoA or acyl carrier protein (ACP) linked units).

>PRK09352 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=92.26  E-value=0.58  Score=41.01  Aligned_cols=81  Identities=11%  Similarity=0.070  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---ec-CcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---LK-QACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v~-~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++.+++|+++ |++++|||.++....     .+..-..+.+.||+++......   .+ .+|++-+..|   ..+++
T Consensus       220 ~~~~~i~~~l~~~-g~~~~di~~~~~h~~-----~~~~~~~~~~~lg~~~~~~~~~~~~~Gn~~~a~~~~~L---~~~~~  290 (319)
T PRK09352        220 ELAKVAREALEAA-GLTPEDIDWLVPHQA-----NLRIIDATAKKLGLPMEKVVVTVDKYGNTSAASIPLAL---DEAVR  290 (319)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHhCCCHHHhhhhHHhhCCHHHHHHHHHH---HHHHH
Confidence            3456888899996 999999999986432     3345567899999965432222   22 2444444444   34455


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       291 ~g~~~~Gd~vll~s~  305 (319)
T PRK09352        291 DGRIKRGDLVLLEGF  305 (319)
T ss_pred             cCCCCCCCEEEEEEE
Confidence            5422 4577887765

>PRK07515 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=91.61  E-value=0.45  Score=42.97  Aligned_cols=82  Identities=6%  Similarity=0.100  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHH-cCCCC--Cc-c-eee-e-cCcchhHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY-LGLNR--NC-R-LFE-L-KQACYSCTAGLQMA  124 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~-LGl~~--~~-~-~~d-v-~~~C~~~~~aL~~A  124 (245)
                      .+...++.+++|+++ |++++|||.++......     .+-..+.+. ||+..  .. + .++ . |.+|++...+|..+
T Consensus       270 ~~~~~~~i~~~L~~~-gl~~~dId~~~~Hq~~~-----~~~d~~~~~llg~~~~~~~~~~~~~~~GNt~sasi~~~L~~~  343 (372)
T PRK07515        270 CPMVAEHIVEHLAEN-GLTPADVKRFWLHQANI-----NMNQLIGKKVLGRDATPEEAPVILDEYANTSSAGSIIAFHKH  343 (372)
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEECCCCH-----HHHHHHHHHhccCCCChhhceEeHHhcCCchhhHHHHHHHHH
Confidence            344678899999996 99999999998643322     222334555 67532  11 1 222 3 34777777777766


Q ss_pred             HHHHhcCCCCCCeEEEEEe
Q psy2407         125 INFILSKVSPGAKALVIAT  143 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~  143 (245)
                      ...++    +++++|+++.
T Consensus       344 ~~~~~----~Gd~vll~~~  358 (372)
T PRK07515        344 SDDLA----AGDLGVICSF  358 (372)
T ss_pred             hccCC----CCCEEEEEEe
Confidence            44332    4577777764

>PRK08257 acetyl-CoA acetyltransferase; Validated

Probab=91.56  E-value=1  Score=42.49  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cceeeecC-----c---chhHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFELKQ-----A---CYSCTAGLQM  123 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~dv~~-----~---C~~~~~aL~~  123 (245)
                      .....|+++|++++ |++++|||++-+..+++     .......+.||+.++ -..+.++.     |   .++++..+..
T Consensus       292 ~~~~~aa~~a~~~A-Gi~~~Did~~elydcF~-----~~~~~~~E~LGl~~~g~~pvN~sGGl~s~G~P~~a~g~~~i~E  365 (498)
T PRK08257        292 PAIRAAGRRALALA-GLGIDDIDAFDLYSCFP-----SAVQVAARELGLDLDDPRPLTVTGGLPFFGGPGNNYVTHAIAE  365 (498)
T ss_pred             hHHHHHHHHHHHHh-CCCHHHCCEEEeccCCH-----HHHHHHHHHcCcCCCCCCCcCCCcChhhcCCchhhHHHHHHHH
Confidence            34457999999997 99999999997766643     334455688998533 11233322     2   2224444444


Q ss_pred             HHHHHhcCCCCCCeEEEEE
Q psy2407         124 AINFILSKVSPGAKALVIA  142 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv~  142 (245)
                      +...|+..  +.+++|+.+
T Consensus       366 ~v~QLRg~--~~~~gLv~~  382 (498)
T PRK08257        366 MVERLRAN--PGRRGLVTA  382 (498)
T ss_pred             HHHHHhhc--CCCEEEEEC
Confidence            45555543  235666654

>PRK07937 lipid-transfer protein; Provisional

Probab=90.62  E-value=1.5  Score=39.53  Aligned_cols=37  Identities=16%  Similarity=0.103  Sum_probs=24.4

Q ss_pred             HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          57 NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        57 ~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      .|++++   + |++++|||++-+.-+     ++.......+.||+.
T Consensus       254 ~a~~~a---A-gi~~~diD~~Ei~D~-----F~~~~l~~~e~lGl~  290 (352)
T PRK07937        254 LAAEAA---T-GGDAGGVDVAELHAP-----FTHQELILREALGLG  290 (352)
T ss_pred             HHHHHh---c-CCCHHHCCEEEEeCC-----ChHHHHHHHHHcCCC
Confidence            344444   5 999999999865433     334445567889984

>cd00327 cond_enzymes Condensing enzymes; Family of enzymes that catalyze a (decarboxylating or non-decarboxylating) Claisen-like condensation reaction

Probab=89.87  E-value=2  Score=36.01  Aligned_cols=80  Identities=9%  Similarity=-0.078  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC---CCcceeeec-CcchhHHHHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN---RNCRLFELK-QACYSCTAGLQMAIN  126 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~---~~~~~~dv~-~~C~~~~~aL~~A~~  126 (245)
                      ......++++++|+++ |++++|||.++.....................+..   .....-.++ .++++++..|..+..
T Consensus       143 ~~~~~~~~i~~~l~~a-g~~~~did~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~as~~~~l~~~~~  221 (254)
T cd00327         143 SGEGLARAARKALEGA-GLTPSDIDYVEAHGTGTPIGDAVELALGLDPDGVRSPAVSATLIMTGHPLGAAGLAILDELLL  221 (254)
T ss_pred             ChHHHHHHHHHHHHHc-CCCHHHCCEEEccCCcCccccHHHHHHHHHHhCCCCCceeccccccccchHHHHHHHHHHHHH
Confidence            4567788999999997 99999999988654433222111111111112221   011112343 466777777766666


Q ss_pred             HHhcC
Q psy2407         127 FILSK  131 (245)
Q Consensus       127 ~i~sg  131 (245)
                      .++.+
T Consensus       222 ~~~~~  226 (254)
T cd00327         222 MLEHE  226 (254)
T ss_pred             HHhCC
Confidence            55543

Members are share strong structural similarity, and are involved in the synthesis and degradation of fatty acids, and the production of polyketides, a diverse group of natural products.

>PRK09052 acetyl-CoA acetyltransferase; Provisional

Probab=89.47  E-value=1  Score=41.26  Aligned_cols=71  Identities=10%  Similarity=0.049  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc---c----eeeecCcchhHHHHHHHHHH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC---R----LFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~---~----~~dv~~~C~~~~~aL~~A~~  126 (245)
                      -...|+++||+++ |++++|||++-+.     +.+........+.||+.+..   .    ++..-.|++|....+..+.+
T Consensus       298 ~~~~A~~~al~~A-gi~~~did~~ei~-----D~f~~~~l~~~e~lg~~~~~vN~~GG~la~GHp~gasG~~~~~~~~~~  371 (399)
T PRK09052        298 GPIEAIPAALKQA-GLKQDDLDWIELN-----EAFAAQSLAVIRDLGLDPSKVNPLGGAIALGHPLGATGAIRTATVVHG  371 (399)
T ss_pred             hHHHHHHHHHHHc-CCCHHHcCEEEeC-----cHHHHHHHHHHHHhCCCCcccCCCCchhhcCchHHHHHHHHHHHHHHH
Confidence            4478999999997 9999999988632     12223344556778873210   0    12222355555556666555


Q ss_pred             HHhc
Q psy2407         127 FILS  130 (245)
Q Consensus       127 ~i~s  130 (245)
                      +-..
T Consensus       372 L~~~  375 (399)
T PRK09052        372 LRRT  375 (399)
T ss_pred             HHhc
Confidence            5443

>PRK06025 acetyl-CoA acetyltransferase; Provisional

Probab=89.47  E-value=1.1  Score=41.24  Aligned_cols=70  Identities=11%  Similarity=0.020  Sum_probs=45.7

Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-------eeeecCcchhHHHHHHHHHHHH
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-------LFELKQACYSCTAGLQMAINFI  128 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-------~~dv~~~C~~~~~aL~~A~~~i  128 (245)
                      ..|++++|+++ |++++|||.+.+.-.     +........+.||++....       ++....|++|....+.+..++.
T Consensus       318 ~~Ai~~aL~~A-Gl~~~DID~~ei~ea-----Fa~~~l~~~~~lg~~~~~vN~~GG~ia~GHp~GaTGa~~v~~ll~qL~  391 (417)
T PRK06025        318 VPAAKKVLAKA-GLTKDDIDLWEINEA-----FAVVAEKFIRDLDLDRDKVNVNGGAIALGHPIGATGSILIGTVLDELE  391 (417)
T ss_pred             HHHHHHHHHHc-CCCHHHCcEEEEchH-----HHHHHHHHHHHcCCChhhccccCCHHhcCCchhHHHHHHHHHHHHHHH
Confidence            57999999997 999999999875422     2233456677888743211       1111236667666777777776


Q ss_pred             hcC
Q psy2407         129 LSK  131 (245)
Q Consensus       129 ~sg  131 (245)
                      +.|
T Consensus       392 ~~g  394 (417)
T PRK06025        392 RRG  394 (417)
T ss_pred             HhC
Confidence            655

>PRK09051 beta-ketothiolase; Provisional

Probab=89.23  E-value=1.5  Score=40.08  Aligned_cols=42  Identities=12%  Similarity=0.224  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-+.     ..+........+.||+.
T Consensus       294 ~~~a~~~al~~a-gi~~~did~~ei~-----d~f~~~~~~~~e~lg~~  335 (394)
T PRK09051        294 PVPATQKALERA-GLTVADLDVIEAN-----EAFAAQACAVTRELGLD  335 (394)
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEec-----CccHHHHHHHHHHhCCC
Confidence            468999999997 9999999998652     22334455566889974

>PRK06205 acetyl-CoA acetyltransferase; Provisional

Probab=89.09  E-value=1.4  Score=40.38  Aligned_cols=42  Identities=12%  Similarity=0.126  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||.+-+.-.     ++...-...+.||+.
T Consensus       300 ~~~a~~~al~~A-gl~~~Did~~ei~d~-----f~~~~l~~~e~lg~~  341 (404)
T PRK06205        300 PVPATEKALARA-GLTLDDIDLIELNEA-----FAAQVLAVLKEWGFG  341 (404)
T ss_pred             HHHHHHHHHHHc-CCCHHHCCEeeeccH-----HHHHHHHHHHHhCcC
Confidence            468999999997 999999998874322     223333445678864

>PF02803 Thiolase_C: Thiolase, C-terminal domain; InterPro: IPR020617 Two different types of thiolase [, , ] are found both in eukaryotes and in prokaryotes: acetoacetyl-CoA thiolase (2

Probab=88.80  E-value=1.9  Score=32.79  Aligned_cols=71  Identities=11%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      ...|++++|+++ |++++|||.+=+.-.     +....-..++.||+.+.       ..++-.-.||+|...-+++++++
T Consensus        24 p~~A~~~al~~a-g~~~~did~~Ei~Ea-----FA~~~l~~~~~lg~~~~~vN~~GG~la~GHP~gasG~r~~~~l~~~L   97 (123)
T PF02803_consen   24 PVPAARKALERA-GLTPDDIDVIEINEA-----FAAQVLAFLEALGLDPEKVNPNGGALALGHPLGASGARLVVELAHQL   97 (123)
T ss_dssp             HHHHHHHHHHHH-T--GGGESEEEE--S-----BHHHHHHHHHHHTTGGGGBSTT--HHHH-BHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCccccchhhccch-----hhhHHHHhhccccccccccCcccccccccccccccccchhhhhHHHH
Confidence            457999999997 999999998865422     22444556777887421       11222224777777777777777


Q ss_pred             HhcC
Q psy2407         128 ILSK  131 (245)
Q Consensus       128 i~sg  131 (245)
                      -..+
T Consensus        98 ~~~~  101 (123)
T PF02803_consen   98 RRRG  101 (123)
T ss_dssp             HHHT
T ss_pred             HHhc
Confidence            6543

3.1.9 from EC) and 3-ketoacyl-CoA thiolase (2.3.1.16 from EC). 3-ketoacyl-CoA thiolase (also called thiolase I) has a broad chain-length specificity for its substrates and is involved in degradative pathways such as fatty acid beta-oxidation. Acetoacetyl-CoA thiolase (also called thiolase II) is specific for the thiolysis of acetoacetyl-CoA and involved in biosynthetic pathways such as poly beta-hydroxybutyrate synthesis or steroid biogenesis. In eukaryotes, there are two forms of 3-ketoacyl-CoA thiolase: one located in the mitochondrion and the other in peroxisomes. There are two conserved cysteine residues important for thiolase activity. The first located in the N-terminal section of the enzymes is involved in the formation of an acyl-enzyme intermediate; the second located at the C-terminal extremity is the active site base involved in deprotonation in the condensation reaction. Mammalian nonspecific lipid-transfer protein (nsL-TP) (also known as sterol carrier protein 2) is a protein which seems to exist in two different forms: a 14 Kd protein (SCP-2) and a larger 58 Kd protein (SCP-x). The former is found in the cytoplasm or the mitochondria and is involved in lipid transport; the latter is found in peroxisomes. The C-terminal part of SCP-x is identical to SCP-2 while the N-terminal portion is evolutionary related to thiolases [].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008152 metabolic process; PDB: 2WUA_B 4E1L_B 3SVK_A 1WDK_D 1WDM_D 2D3T_D 1WDL_C 2IB8_B 2IBU_A 2IB9_C ....

>COG0304 FabB 3-oxoacyl-(acyl-carrier-protein) synthase [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.77  E-value=0.84  Score=42.02  Aligned_cols=45  Identities=20%  Similarity=0.200  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcC
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLG  100 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LG  100 (245)
                      =+.+|.+.||+++ |++++|||.|- ++|.|+ ..-+.-...|.+.+|
T Consensus       277 Ga~~am~~AL~~A-gl~~~~idYinaHgTsT~-~nD~~E~~ai~~vfg  322 (412)
T COG0304         277 GAIRAMRAALADA-GLTPEDIDYINAHGTSTP-ANDKAESLAIKRVFG  322 (412)
T ss_pred             hHHHHHHHHHHHc-CCCHhHCCEEeCCCccCC-CccHHHHHHHHHHhc
Confidence            4568999999997 99999999998 566665 344555666667777

>PF02801 Ketoacyl-synt_C: Beta-ketoacyl synthase, C-terminal domain; InterPro: IPR014031 Beta-ketoacyl-ACP synthase 2

Probab=88.70  E-value=0.37  Score=36.16  Aligned_cols=77  Identities=12%  Similarity=0.016  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCCC---Ccceee----ec-CcchhHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLNR---NCRLFE----LK-QACYSCTAGLQM  123 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~~---~~~~~d----v~-~~C~~~~~aL~~  123 (245)
                      +-..++.++||+++ |++++|||+|... +.++ ..-+.-...+.+.++-..   .++.-.    ++ ...++++..|..
T Consensus        25 ~~~~~~i~~al~~a-gi~~~~I~~i~~hg~Gt~-~~D~~E~~ai~~~~~~~~~~~~~~v~s~K~~~Gh~~~asG~~~l~~  102 (119)
T PF02801_consen   25 AALARAIRRALADA-GISPEDIDYIEAHGTGTP-LGDAAEAEAIARVFGDSARQQPVPVGSVKSNIGHTEAASGLLSLAK  102 (119)
T ss_dssp             HHHHHHHHHHHHHH-TS-GGGEEEEE----SSH-HHHHHHHHHHHHHHGGGGGTSTSEEE-THHHH-B-GGGHHHHHHHH
T ss_pred             HHHHHHHHHHHhhh-ccccccceeeeeeccccc-cchhhhhhhhhhhhcccccccccceeccccccccccccchHHHHHH
Confidence            34478899999997 9999999999854 3332 222344555566555421   133222    22 366778888888


Q ss_pred             HHHHHhcC
Q psy2407         124 AINFILSK  131 (245)
Q Consensus       124 A~~~i~sg  131 (245)
                      +...++.+
T Consensus       103 ~~l~l~~~  110 (119)
T PF02801_consen  103 ALLALEHG  110 (119)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHhcC
Confidence            77777765

3.1.41 from EC (KAS) [] is the enzyme that catalyzes the condensation of malonyl-ACP with the growing fatty acid chain. It is found as a component of a number of enzymatic systems, including fatty acid synthetase (FAS), which catalyzes the formation of long-chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH; the multi-functional 6-methysalicylic acid synthase (MSAS) from Penicillium patulum [], which is involved in the biosynthesis of a polyketide antibiotic; polyketide antibiotic synthase enzyme systems; Emericella nidulans multifunctional protein Wa, which is involved in the biosynthesis of conidial green pigment; Rhizobium nodulation protein nodE, which probably acts as a beta-ketoacyl synthase in the synthesis of the nodulation Nod factor fatty acyl chain; and yeast mitochondrial protein CEM1. The condensation reaction is a two step process, first the acyl component of an activated acyl primer is transferred to a cysteine residue of the enzyme and is then condensed with an activated malonyl donor with the concomitant release of carbon dioxide. This entry represents the C-terminal domain of beta-ketoacyl-ACP synthases. The active site is contained in a cleft betweeen N- and C-terminal domains, with residues from both domains contributing to substrate binding and catalysis [].; PDB: 2UV8_B 3HMJ_A 2VKZ_C 4EWG_A 1TQY_H 1E5M_A 1J3N_B 2VZ8_A 2VZ9_B 3O04_A ....

>PRK06366 acetyl-CoA acetyltransferase; Provisional

Probab=88.59  E-value=1.3  Score=40.40  Aligned_cols=78  Identities=10%  Similarity=0.038  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      ...|+++|++++ |++++|||++-+.=.     +....-.-.+.||+..+       ..++..-.||+|....+.++.++
T Consensus       287 ~~~A~~~al~~A-gl~~~DiDv~Ei~da-----Fa~~~l~~le~lgl~g~~vN~~GG~la~GHP~GatG~~~~~~l~~qL  360 (388)
T PRK06366        287 PIPATRKLLEKQ-NKSIDYYDLVEHNEA-----FSIASIIVRDQLKIDNERFNVNGGAVAIGHPIGNSGSRIIVTLINAL  360 (388)
T ss_pred             HHHHHHHHHHHc-CCCHHHcceeeccch-----hHHHHHHHHHHhCCCCCccCCCCchhhhCCCcCCCHHHHHHHHHHHH
Confidence            468999999997 999999998864322     22334455677887432       11222234777777777777777


Q ss_pred             HhcCCCCCCeEEEE
Q psy2407         128 ILSKVSPGAKALVI  141 (245)
Q Consensus       128 i~sg~~~~~~aLVv  141 (245)
                      -..|   .++.|+.
T Consensus       361 ~~~~---~~~g~~~  371 (388)
T PRK06366        361 KTRH---MKTGLAT  371 (388)
T ss_pred             HhcC---CCeEEEE
Confidence            6543   2555543

>PRK06064 acetyl-CoA acetyltransferase; Provisional

Probab=88.09  E-value=2.2  Score=38.77  Aligned_cols=42  Identities=17%  Similarity=0.080  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      -...|+++|++++ |++++|||.+-..-++.     .......+.||+
T Consensus       259 ~~~~a~~~al~~a-Gi~~~did~~e~~d~ft-----~~~~~~~e~lgl  300 (389)
T PRK06064        259 AAVVAAEKAYKMA-GIEPKDIDVAEVHDCFT-----IAEILAYEDLGF  300 (389)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEecCCCc-----HHHHHHHHHcCC
Confidence            4457999999997 99999999986543322     234445677776

>PRK07850 acetyl-CoA acetyltransferase; Provisional

Probab=87.62  E-value=2.8  Score=38.23  Aligned_cols=80  Identities=9%  Similarity=0.014  Sum_probs=45.7

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      .-...|+++|++++ |++++|||++-+.-.     ++...-...+.||+...       ..++..-.+++|...-++++.
T Consensus       285 ~~~~~a~~~al~~a-gl~~~did~~ei~d~-----F~~~~l~~~e~lg~~~~pvN~~GG~la~Ghp~gatG~~~v~e~~~  358 (387)
T PRK07850        285 DGPVQATAKVLEKA-GMKIGDIDLVEINEA-----FASVVLSWAQVHEPDMDKVNVNGGAIALGHPVGSTGARLITTALH  358 (387)
T ss_pred             chHHHHHHHHHHHc-CCCHHHcCeeeeccc-----chHHHHHHHHHcCCCCCCcCCCCchhhcCCCcchhHHHHHHHHHH
Confidence            44578999999997 999999999876333     22333344577886322       111222234444444555555


Q ss_pred             HHHhcCCCCCCeEEEE
Q psy2407         126 NFILSKVSPGAKALVI  141 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv  141 (245)
                      ++-+.+   +++.|+.
T Consensus       359 qL~~~~---~~~g~~~  371 (387)
T PRK07850        359 ELERTD---KSTALIT  371 (387)
T ss_pred             HHHhcC---CCeEEEE
Confidence            554432   2555543

>PRK07851 acetyl-CoA acetyltransferase; Provisional

Probab=86.83  E-value=1.1  Score=41.03  Aligned_cols=78  Identities=9%  Similarity=0.055  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      ...|+++|++++ |++++|||++-.    . +.++...-...+.||+.+.       ..++..-.|++|....+.+..++
T Consensus       305 ~~~a~~~al~~A-gi~~~did~~ei----~-d~f~~~~l~~le~lg~~~~pvN~~GG~l~~Ghp~gasg~~~~~~~~~qL  378 (406)
T PRK07851        305 PVEASKQALARA-GMSIDDIDLVEI----N-EAFAAQVLPSARELGIDEDKLNVSGGAIALGHPFGMTGARITTTLLNNL  378 (406)
T ss_pred             HHHHHHHHHHHh-CCCHHHCCeehh----h-hHHHHHHHHHHHHhCCCccccCCCCChHhhcCcHHHHHHHHHHHHHHHH
Confidence            468999999997 999999998842    1 1122223333477887321       11222223555555555555555


Q ss_pred             HhcCCCCCCeEEEE
Q psy2407         128 ILSKVSPGAKALVI  141 (245)
Q Consensus       128 i~sg~~~~~~aLVv  141 (245)
                      -+.   ++++.|+.
T Consensus       379 ~~~---~~~~g~~~  389 (406)
T PRK07851        379 QTH---DKTFGLET  389 (406)
T ss_pred             Hhc---CCCeEEEE
Confidence            442   22555543

>PRK07516 acetyl-CoA acetyltransferase; Provisional

Probab=85.15  E-value=2.6  Score=38.31  Aligned_cols=44  Identities=9%  Similarity=-0.003  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      .-...|+++|++++ |++++|||++-+.-.+     +...-...+.||+.
T Consensus       260 ~~~~~a~~~a~~~a-gl~~~did~~e~~d~f-----~~~~~~~~e~lg~~  303 (389)
T PRK07516        260 EGPRRAWQRALAQA-GVTLDDLSFVETHDCF-----TIAELIEYEAMGLA  303 (389)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEEecCC-----CHHHHHHHHHcCCC
Confidence            44557999999997 9999999998654332     23344556777764

>cd00831 CHS_like Chalcone and stilbene synthases; plant-specific polyketide synthases (PKS) and related enzymes, also called type III PKSs

Probab=84.64  E-value=3  Score=37.38  Aligned_cols=82  Identities=13%  Similarity=0.071  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHhcC--CCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-----ee-eec-CcchhHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLS--NIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-----LF-ELK-QACYSCTAGLQM  123 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~--g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-----~~-dv~-~~C~~~~~aL~~  123 (245)
                      +...++++++|++ .  |++++|||.+++....     +.+-..+++.||+++...     .+ +.+ .++++-..+|..
T Consensus       259 ~~~~~~i~~~L~~-~~~g~~~~did~~~~H~~~-----~~i~~~v~~~lgl~~~~~~~s~~~l~~~GN~~sasi~~~L~~  332 (361)
T cd00831         259 KNLERVLRKLLAR-LGIGLFKLAFDHWCVHPGG-----RAVLDAVEKALGLSPEDLEASRMVLRRYGNMSSSSVLYVLAY  332 (361)
T ss_pred             HHHHHHHHHHhcc-ccCCCccccceEEEECCCC-----hHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchhccHHHHHHH
Confidence            3455677788888 7  8999999999865433     244557899999964422     12 233 366666666655


Q ss_pred             HHHHHhcCCC-CCCeEEEEEe
Q psy2407         124 AINFILSKVS-PGAKALVIAT  143 (245)
Q Consensus       124 A~~~i~sg~~-~~~~aLVv~~  143 (245)
                      +   ++.|.. +++++|+++.
T Consensus       333 ~---~~~g~~~~Gd~vll~~~  350 (361)
T cd00831         333 M---EAKGRVKRGDRGLLIAF  350 (361)
T ss_pred             H---HHhCCCCCCCEEEEEEE
Confidence            4   444422 4577777764

PKS generate an array of different products, dependent on the nature of the starter molecule. They share a common chemical strategy, after the starter molecule is loaded onto the active site cysteine, a carboxylative condensation reation extends the polyketide chain. Plant-specific PKS are dimeric iterative PKSs, using coenzyme A esters to deliver substrate to the active site, but they differ in the choice of starter molecule and the number of condensation reactions.

>PTZ00455 3-ketoacyl-CoA thiolase; Provisional

Probab=84.49  E-value=3.4  Score=38.39  Aligned_cols=46  Identities=9%  Similarity=0.055  Sum_probs=32.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR  103 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~  103 (245)
                      ...+..|+++|++++ |++++|||++-+.-++     +...-...+.||+.+
T Consensus       308 ~~~~~~A~~~a~~~A-Gl~~~DiD~~Ei~daF-----a~~~l~~~e~lGl~~  353 (438)
T PTZ00455        308 MFTSRAAAQKALSMA-GVKPSDLQVAEVHDCF-----TIAELLMYEALGIAE  353 (438)
T ss_pred             chHHHHHHHHHHHHc-CCCHHHCcEeeecccC-----hHHHHHHHHHcCCCC
Confidence            344578999999997 9999999988654332     233445567788743

>PRK12880 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed

Probab=84.40  E-value=2.4  Score=38.08  Aligned_cols=72  Identities=17%  Similarity=0.114  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-e--e-ec-CcchhHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-F--E-LK-QACYSCTAGLQMAINF  127 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-~--d-v~-~~C~~~~~aL~~A~~~  127 (245)
                      .....+++++|+++ |++++|||.+++..     ..+.+-..+.++||+++.... .  + .+ .+.++...+|.   ..
T Consensus       242 ~~~~~~i~~~L~~~-gl~~~did~~v~HQ-----~~~~i~~~i~~~Lgl~~ek~~~~~l~~~GNtssasip~~L~---~~  312 (353)
T PRK12880        242 ECEPKSFKEILEFS-KVDEKDIAFHLFHQ-----SNAYLVDCIKEELKLNDDKVPNFIMEKYANLSACSLPALLC---EL  312 (353)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEECC-----CCHHHHHHHHHHhCCCHHHhhhhhHHhhCCHHHHHHHHHHH---HH
Confidence            34456788999996 99999999998642     234556788999999754322 1  2 22 34445555554   34


Q ss_pred             HhcCCC
Q psy2407         128 ILSKVS  133 (245)
Q Consensus       128 i~sg~~  133 (245)
                      +..|..
T Consensus       313 ~~~~~~  318 (353)
T PRK12880        313 DTPKEF  318 (353)
T ss_pred             HHcCCc
Confidence            566643

>PRK05790 putative acyltransferase; Provisional

Probab=84.36  E-value=4  Score=37.15  Aligned_cols=41  Identities=15%  Similarity=0.152  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ...|+++|++++ |++++|||.+-+.-     .+....-...+.||+
T Consensus       293 ~~~a~~~a~~~A-gi~~~did~~e~~d-----~f~~~~l~~~e~lg~  333 (393)
T PRK05790        293 PVPAIRKALEKA-GWSLADLDLIEINE-----AFAAQALAVEKELGL  333 (393)
T ss_pred             HHHHHHHHHHHc-CCCHHHCCEEEeCc-----HHHHHHHHHHHHhCC
Confidence            457999999997 99999999986421     222334445677886

>PRK06158 thiolase; Provisional

Probab=84.25  E-value=4.6  Score=36.72  Aligned_cols=43  Identities=9%  Similarity=0.075  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      -...|+++|++++ |++++|||.+-+.-++     +...-...+.||+.
T Consensus       255 ~~~~aa~~A~~~A-Gi~p~DId~~ElyD~F-----s~~~l~~~E~lG~~  297 (384)
T PRK06158        255 AAAESGPRAFAMA-GLTPADIDVVELYDAF-----TINTILFLEDLGFC  297 (384)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCcEEEecCCc-----hHHHHHHHHHcCCC
Confidence            3567999999997 9999999998765443     23334445777763

>PRK06690 acetyl-CoA acetyltransferase; Provisional

Probab=84.00  E-value=4.2  Score=36.76  Aligned_cols=73  Identities=10%  Similarity=-0.054  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee-------eecCcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF-------ELKQACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~-------dv~~~C~~~~~aL~~A~  125 (245)
                      .-...|++++|+++ |++++|||++...-     ..........+.||+.+.....       -...|++|......+..
T Consensus       258 ~~~~~a~~~al~~A-gl~~~Did~~ei~e-----afa~~~~~~~e~lgl~~~~vn~~GG~la~Ghp~GatG~~~~~~~~~  331 (361)
T PRK06690        258 TGPIFAVNKLLNEM-NMKVEDIDYFEINE-----AFASKVVACAKELQIPYEKLNVNGGAIALGHPYGASGAMLVTRLFY  331 (361)
T ss_pred             hHHHHHHHHHHHHc-CCCHHHcCEeeecc-----hhHHHHHHHHHhcCCCchhcccCCcHHhccCchhhhHHHHHHHHHH
Confidence            34577999999997 99999999986532     2334445567789984321111       12346776666666666


Q ss_pred             HHHhcC
Q psy2407         126 NFILSK  131 (245)
Q Consensus       126 ~~i~sg  131 (245)
                      ++-+.|
T Consensus       332 ql~~~~  337 (361)
T PRK06690        332 QAKRED  337 (361)
T ss_pred             HHHHhC
Confidence            665543

>PRK14691 3-oxoacyl-(acyl carrier protein) synthase II; Provisional

Probab=83.87  E-value=3.2  Score=37.23  Aligned_cols=48  Identities=13%  Similarity=0.039  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCC
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ..-..+|+++||+++ |++++|||.|-. +|.|+ ..-+.-...|.+.+|-
T Consensus       205 ~~~~~~ai~~AL~~A-gl~p~dIdyIeaHgtgT~-~~D~~E~~Ai~~~fg~  253 (342)
T PRK14691        205 GDGAYRAMKIALRQA-GITPEQVQHLNAHATSTP-VGDLGEINAIKHLFGE  253 (342)
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEecCCCCc-CCCHHHHHHHHHHhCC
Confidence            456778999999997 999999999874 44444 3345556677777774

>cd00829 SCP-x_thiolase Thiolase domain associated with sterol carrier protein (SCP)-x isoform and related proteins; SCP-2 has multiple roles in intracellular lipid circulation and metabolism

Probab=83.75  E-value=5.6  Score=35.73  Aligned_cols=45  Identities=16%  Similarity=0.008  Sum_probs=32.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR  103 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~  103 (245)
                      .-...|+++||+++ |++++|||++-+..++     +...-...+.||+.+
T Consensus       251 ~~~~~a~~~al~~A-gl~~~did~~ei~d~F-----~~~~l~~~e~lGl~~  295 (375)
T cd00829         251 DAARLAARRAYKMA-GITPDDIDVAELYDCF-----TIAELLALEDLGFCE  295 (375)
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEecCcC-----hHHHHHHHHHcCCCC
Confidence            44568999999997 9999999998765443     234455567788743

The N-terminal presequence in the SCP-x isoform represents a peroxisomal 3-ketacyl-Coa thiolase specific for branched-chain acyl CoAs, which is proteolytically cleaved from the sterol carrier protein.

>PRK06519 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=83.35  E-value=4.5  Score=37.05  Aligned_cols=77  Identities=8%  Similarity=-0.118  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHHhc
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFILS  130 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i~s  130 (245)
                      .-..++.++||+++ |+ ++|||+|. ++|.|+ ..-..-...|.+.++.+-...---++ .-.++++..+..+...|+.
T Consensus       280 ~~~~~am~~AL~~A-gl-~~~IdyI~ahgtgT~-~~D~~E~~Ai~~~f~~pvsS~Ks~~GH~l~AAGa~e~i~~~lal~~  356 (398)
T PRK06519        280 GDLEASLERLLKPA-GG-LAAPTAVISGATGAH-PATAEEKAALEAALAGPVRGIGTLFGHTMEAQFPLGLALAALSVSK  356 (398)
T ss_pred             HHHHHHHHHHHHHC-CC-cccCCEEEeCCCCCC-CccHHHHHHHHHHcCCCccccchhhccchHHHHHHHHHHHHHHHhc
Confidence            34578999999997 99 89999987 445554 23334456667777753111111122 2344555555555566666


Q ss_pred             CC
Q psy2407         131 KV  132 (245)
Q Consensus       131 g~  132 (245)
                      |.
T Consensus       357 g~  358 (398)
T PRK06519        357 GA  358 (398)
T ss_pred             Cc
Confidence            63

>COG3425 PksG 3-hydroxy-3-methylglutaryl CoA synthase [Lipid metabolism]

Probab=83.29  E-value=6.7  Score=35.58  Aligned_cols=83  Identities=14%  Similarity=0.185  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC-----CCccee-eec-CcchhHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN-----RNCRLF-ELK-QACYSCTAGLQ  122 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~-----~~~~~~-dv~-~~C~~~~~aL~  122 (245)
                      .-......|++..+++. |+.++|.|.+++.+-.     |.....++..||.+     +..... .|+ ..|++...+|.
T Consensus       206 ~Y~~~~~~a~~~~~~k~-gls~~dfdy~vfH~P~-----~k~~~ka~k~l~~~~e~v~~~l~~~~~vGN~YtgS~~L~La  279 (377)
T COG3425         206 AYFKHVENAAKGYMEKT-GLSPDDFDYIVFHQPN-----GKFPKKAAKSLGFKEEQVKPGLVYPQRIGNTYTGSLLLGLA  279 (377)
T ss_pred             HHHHHHHHHHHHHHHHh-CCChhhhCeEEecCCC-----CchHHHHHHHhCccHhhcCccchhhhhcCcccchhHHHHHH
Confidence            34567788999999996 9999999999986443     45567777888865     333333 464 48888887775


Q ss_pred             HHHHHHhcCCCCCCeEEEE
Q psy2407         123 MAINFILSKVSPGAKALVI  141 (245)
Q Consensus       123 ~A~~~i~sg~~~~~~aLVv  141 (245)
                      .......  . +++++|++
T Consensus       280 s~L~~a~--~-~G~rIl~~  295 (377)
T COG3425         280 SLLDNAK--L-PGDRILLF  295 (377)
T ss_pred             HHHhhcC--C-CCCEEEEE
Confidence            4433333  2 45777776

>PRK09050 beta-ketoadipyl CoA thiolase; Validated

Probab=82.95  E-value=4.7  Score=36.99  Aligned_cols=42  Identities=17%  Similarity=0.197  Sum_probs=30.2

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-+.     +.++...-...+.||+.
T Consensus       299 ~~~a~~~al~~A-gl~~~DId~~ei~-----D~f~~~~l~~~e~lg~~  340 (401)
T PRK09050        299 PAPATRKLLARL-GLTIDQFDVIELN-----EAFAAQGLAVLRQLGLA  340 (401)
T ss_pred             HHHHHHHHHHHc-CCCHHHCCccccC-----cHhHHHHHHHHHHcCCC
Confidence            468999999997 9999999988632     12233344556788973

>TIGR03150 fabF beta-ketoacyl-acyl-carrier-protein synthase II

Probab=82.92  E-value=2.5  Score=38.42  Aligned_cols=77  Identities=12%  Similarity=0.040  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCC-Ccceee----ecC-cchhHHHHHHHHHH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNR-NCRLFE----LKQ-ACYSCTAGLQMAIN  126 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~-~~~~~d----v~~-~C~~~~~aL~~A~~  126 (245)
                      -..+++++||+++ |++++|||++.. +|.++ ..-+.-...+.+.+|-.. .++.-.    +++ ..++++..+..+..
T Consensus       276 ~~~~ai~~Al~~A-gi~~~dId~ve~h~tgt~-~~D~~E~~a~~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~~~~~~  353 (407)
T TIGR03150       276 GAARAMRAALKDA-GINPEDVDYINAHGTSTP-LGDKAETKAIKRVFGDHAYKLAVSSTKSMTGHLLGAAGAIEAIFTVL  353 (407)
T ss_pred             HHHHHHHHHHHHc-CCCHhHCCEEeCcCCCCC-CCCHHHHHHHHHHhccCCCCCceeCCcchhchhHHHHHHHHHHHHHH
Confidence            3568999999997 999999999874 44443 233444556666676421 222211    222 34445555555555


Q ss_pred             HHhcCC
Q psy2407         127 FILSKV  132 (245)
Q Consensus       127 ~i~sg~  132 (245)
                      .++.+.
T Consensus       354 ~l~~~~  359 (407)
T TIGR03150       354 AIRDGV  359 (407)
T ss_pred             HHhcCC
Confidence            666553

FabB sequences should fall well below the noise cutoff of this model.

>PRK13359 beta-ketoadipyl CoA thiolase; Provisional

Probab=82.17  E-value=4.9  Score=36.86  Aligned_cols=41  Identities=20%  Similarity=0.206  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ...|+++||+++ |++++|||++-+.     +.+....-...+.||+
T Consensus       298 ~~~A~~~al~~A-Gl~~~DID~iei~-----dafa~~~l~~~e~lg~  338 (400)
T PRK13359        298 PAPATQKLLARL-GMTLDQFDVIELN-----EAFASQGLAVLRELGL  338 (400)
T ss_pred             HHHHHHHHHHHh-CCCHHHcCcCccC-----cHhHHHHHHHHHHcCC
Confidence            468999999997 9999999988632     1222334455677887

>PRK07661 acetyl-CoA acetyltransferase; Provisional

Probab=82.03  E-value=3.7  Score=37.53  Aligned_cols=72  Identities=15%  Similarity=0.112  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC---cc----eeeecCcchhHHHHHHHHHH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN---CR----LFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~---~~----~~dv~~~C~~~~~aL~~A~~  126 (245)
                      -...|+++||+++ |++++|||++-+.-     .++...-...+.||+.+.   ..    ++..-.|++|....++++.+
T Consensus       290 ~~~~a~~~al~~a-gl~~~did~~ei~d-----~f~~~~l~~~e~lg~~~~~vN~~GG~~a~Ghp~gasG~~~~~el~~q  363 (391)
T PRK07661        290 GPIAAIPKALKLA-GLELSDIGLFELNE-----AFASQSIQVIRELGLDEEKVNVNGGAIALGHPLGCTGAKLTLSLIHE  363 (391)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEeCC-----HHHHHHHHHHHHcCCCCCCCCCCCChHHhCCcHHHHHHHHHHHHHHH
Confidence            4468999999997 99999999987322     222323333467887321   11    12222356666666666666


Q ss_pred             HHhcC
Q psy2407         127 FILSK  131 (245)
Q Consensus       127 ~i~sg  131 (245)
                      +-+.|
T Consensus       364 L~~~~  368 (391)
T PRK07661        364 MKRRN  368 (391)
T ss_pred             HHhcC
Confidence            65543

>PRK08947 fadA 3-ketoacyl-CoA thiolase; Reviewed

Probab=81.78  E-value=7  Score=35.64  Aligned_cols=41  Identities=15%  Similarity=0.120  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ...|+++|++++ |++++|||++-+.-.     +....-...+.||+
T Consensus       284 ~~~a~~~al~~A-gl~~~DId~~El~d~-----F~~~~l~~~e~lg~  324 (387)
T PRK08947        284 PVPATQKALKRA-GLSISDIDVFELNEA-----FAAQSLPCLKDLGL  324 (387)
T ss_pred             HHHHHHHHHHHc-CCCHHHCCEEEeccc-----chHHHHHHHHHcCC
Confidence            467899999997 999999998865332     23334455677887

>cd00834 KAS_I_II Beta-ketoacyl-acyl carrier protein (ACP) synthase (KAS), type I and II

Probab=81.64  E-value=4.1  Score=36.87  Aligned_cols=80  Identities=10%  Similarity=-0.004  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCC-CCccee----eec-CcchhHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLN-RNCRLF----ELK-QACYSCTAGLQMA  124 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~-~~~~~~----dv~-~~C~~~~~aL~~A  124 (245)
                      ..-..++++++|+++ |++++|||.+... +.++ ..-+.-...+.+.++-. ..++..    .++ ..+++++..|..+
T Consensus       274 ~~~~~~~i~~al~~a-gi~~~dId~v~~h~tgt~-~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~l~~~  351 (406)
T cd00834         274 GEGAARAMRAALADA-GLSPEDIDYINAHGTSTP-LNDAAESKAIKRVFGEHAKKVPVSSTKSMTGHLLGAAGAVEAIAT  351 (406)
T ss_pred             cHHHHHHHHHHHHHc-CCCHHHCCEEecccccCc-cccHHHHHHHHHHhcccCCCCceeCcchhhccchhhhhHHHHHHH
Confidence            345567899999997 9999999998854 4333 33334455555656541 122221    123 3677888888888


Q ss_pred             HHHHhcCCC
Q psy2407         125 INFILSKVS  133 (245)
Q Consensus       125 ~~~i~sg~~  133 (245)
                      ...++.|..
T Consensus       352 ~~~l~~~~i  360 (406)
T cd00834         352 LLALRDGVL  360 (406)
T ss_pred             HHHHhcCCc
Confidence            888887754

KASs are responsible for the elongation steps in fatty acid biosynthesis. KASIII catalyses the initial condensation and KAS I and II catalyze further elongation steps by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP.

>PRK07314 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed

Probab=81.59  E-value=3.2  Score=37.87  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=47.4

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCC-CCcceee----ecC-cchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLN-RNCRLFE----LKQ-ACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~-~~~~~~d----v~~-~C~~~~~aL~~A~~~  127 (245)
                      ...|+++||+++ |++++|||++. ++|.|+ ...+.-...+.+.+|.. .+++...    +++ .+++++..+..+...
T Consensus       278 ~~~a~~~Al~~a-gi~~~dId~v~~hgtgt~-~~d~~E~~al~~~~~~~~~~~~v~s~k~~~Gh~~~AsG~~~~i~~~l~  355 (411)
T PRK07314        278 AARAMKLALKDA-GINPEDIDYINAHGTSTP-AGDKAETQAIKRVFGEHAYKVAVSSTKSMTGHLLGAAGAVEAIFSVLA  355 (411)
T ss_pred             HHHHHHHHHHHc-CCCHHHCCEEEccccCCc-cccHHHHHHHHHHhcccCCCCeeECccchhchhHHHHHHHHHHHHHHH
Confidence            467899999997 99999999987 444443 23334445566666632 1222211    233 455666666666667


Q ss_pred             HhcCCC
Q psy2407         128 ILSKVS  133 (245)
Q Consensus       128 i~sg~~  133 (245)
                      ++.|..
T Consensus       356 l~~~~i  361 (411)
T PRK07314        356 IRDQVI  361 (411)
T ss_pred             HhCCCc
Confidence            776644

>PRK06504 acetyl-CoA acetyltransferase; Provisional

Probab=81.34  E-value=3.4  Score=37.73  Aligned_cols=47  Identities=11%  Similarity=0.060  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCC
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNR  103 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~  103 (245)
                      .......|+++|++++ |++++|||++-+.-.     +....-...+.||+.+
T Consensus       286 ~~~~~~~a~~~a~~~a-gl~~~Did~~Ei~d~-----Fa~~~l~~~e~lG~~~  332 (390)
T PRK06504        286 MLEAPLPATERALKKA-GMKIDDIDLYEVNEA-----FASVPLAWLKATGADP  332 (390)
T ss_pred             hhccHHHHHHHHHHHc-CCCHHHCCEEEeccc-----chHHHHHHHHHhCCCC
Confidence            3345567999999997 999999998865433     2233445578899853

>TIGR02430 pcaF beta-ketoadipyl CoA thiolase

Probab=80.34  E-value=5.8  Score=36.38  Aligned_cols=42  Identities=14%  Similarity=0.192  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-+.     +.++.......+.||+.
T Consensus       298 ~~~a~~~al~~A-gl~~~DID~~ei~-----D~f~~~~l~~~e~lG~~  339 (400)
T TIGR02430       298 PVPATQKLLARA-GLSIDQFDVIELN-----EAFAAQALAVLRELGLA  339 (400)
T ss_pred             HHHHHHHHHHHh-CCCHHHCCCcccC-----cHHHHHHHHHHHHcCCC
Confidence            468999999997 9999999988632     22333444556788973

Members of this family are designated beta-ketoadipyl CoA thiolase, an enzyme that acts at the end of pathways for the degradation of protocatechuate (from benzoate and related compounds) and of phenylacetic acid.

>PLN02787 3-oxoacyl-[acyl-carrier-protein] synthase II

Probab=80.24  E-value=4.7  Score=38.51  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEE-EEeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELII-TCSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li-~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~~~i  128 (245)
                      ..++.++||+++ |++++|||+|- ++|.|+. .-+.-...|.+.+|-.+..+...    ++ .-+++++..+..+...|
T Consensus       407 ~~~am~~AL~~A-Gl~p~dIdyInaHGTGT~~-gD~~E~~Ai~~~Fg~~~~~pV~S~Ks~iGH~~gAAGa~eli~~~lal  484 (540)
T PLN02787        407 VILCIEKALAQS-GVSKEDVNYINAHATSTKA-GDLKEYQALMRCFGQNPELRVNSTKSMIGHLLGAAGAVEAIATVQAI  484 (540)
T ss_pred             HHHHHHHHHHHc-CCCHHHCcEEEccCccCCC-CCHHHHHHHHHHhCCCCCceeeCCCCCcCCCcccchHHHHHHHHHHH
Confidence            468899999997 99999999986 5555552 23344556667777422233221    22 24445555555555666


Q ss_pred             hcCCC
Q psy2407         129 LSKVS  133 (245)
Q Consensus       129 ~sg~~  133 (245)
                      +.|..
T Consensus       485 ~~g~i  489 (540)
T PLN02787        485 RTGWV  489 (540)
T ss_pred             hcCCc
Confidence            66643

>PRK06289 acetyl-CoA acetyltransferase; Provisional

Probab=80.14  E-value=4.2  Score=37.20  Aligned_cols=43  Identities=7%  Similarity=-0.021  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ....|+++|++++ |++++|||.+-+.-.     +....-...+.||+.
T Consensus       277 ~~~~aa~~a~~~A-gi~~~Didv~el~D~-----fa~~~l~~le~lGl~  319 (403)
T PRK06289        277 HVRQAVLDAYRRA-GVGLDDLDGFEVHDC-----FTPSEYLAIDHIGLT  319 (403)
T ss_pred             HHHHHHHHHHHHc-CCCHHHCeEEeeecc-----chHHHHHHHHHcCCC
Confidence            3568999999997 999999999875433     234445556788874

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	245
3v4x_A	388	The Biochemical And Structural Basis For Inhibition		8e-28
1x9e_A	383	Crystal Structure Of Hmg-Coa Synthase From Enteroco		2e-27
2hdb_A	383	Hmg-coa Synthase From Enterococcus Faecalis. Mutati		4e-27
3v4n_A	388	The Biochemical And Structural Basis For Inhibition		1e-26
1ysl_A	402	Crystal Structure Of Hmg-Coa Synthase From Enteroco		2e-26
1ysl_B	384	Crystal Structure Of Hmg-Coa Synthase From Enteroco		4e-26
1xpk_C	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		1e-24
1tvz_A	388	Crystal Structure Of 3-hydroxy-3-methylglutaryl-coe		2e-23
1xpk_B	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		2e-23
1xpk_D	388	Crystal Structure Of Staphylococcus Aureus Hmg-Coa		4e-23
1xpl_B	390	Crystal Structure Of Staphylococcus Aureus Hmg-coa		4e-23
3leh_A	425	The Crystal Structure Of Smu.943c From Streptococcu		7e-21
3sqz_A	389	Crystal Structure Of Hmg_coa Synthase Complexed Wit		1e-19
2wya_A	460	Crystal Structure Of Human Mitochondrial 3-Hydroxy-		1e-10
2p8u_A	478	Crystal Structure Of Human 3-Hydroxy-3-Methylglutar		2e-10
2f82_A	450	Hmg-Coa Synthase From Brassica Juncea In The Apo-Fo		4e-08
2fa3_A	450	Hmg-Coa Synthase From Brassica Juncea In Complex Wi		7e-07
1hn9_A	317	Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii		1e-05
1ebl_A	317	The 1.8 A Crystal Structure And Active Site Archite		4e-05
1mzs_A	317	Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii		3e-04
3il9_A	340	Structure Of E. Coli Fabh Length = 340		3e-04

>pdb|3V4X|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-Coa Synthase, Mvas, By Hymeglusin Length = 388

Iteration: 1
 Score =  120 bits (301), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 79/236 (33%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA 
Sbjct: 6   MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 65
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+ACY  TAG
Sbjct: 66  AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAG 122
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           LQ+A N +   + P  K LV+A DI+++ +              EP+ GAGAVAML+S +
Sbjct: 123 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVSSE 170
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P I       N   + ++ D  RP        +  LS  +Y+   AQ + E+KKR 
Sbjct: 171 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 225

>pdb|1X9E|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis Length = 383

Iteration: 1
 Score =  119 bits (298), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 127/236 (53%), Gaps = 18/236 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA 
Sbjct: 1   MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 60
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+ACY  TAG
Sbjct: 61  AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEACYGATAG 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           LQ+A N +   + P  K LV+A DI+++ +              EP+ GAGAVAML++ +
Sbjct: 118 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P I       N   + ++ D  RP        +  LS  +Y+   AQ + E+KKR 
Sbjct: 166 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 220

>pdb|2HDB|A Chain A, Hmg-coa Synthase From Enterococcus Faecalis. Mutation Alanine 110 To Glycine Length = 383

Iteration: 1
 Score =  117 bits (294), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA 
Sbjct: 1   MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 60
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+ CY  TAG
Sbjct: 61  AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEGCYGATAG 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           LQ+A N +   + P  K LV+A DI+++ +              EP+ GAGAVAML++ +
Sbjct: 118 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P I       N   + ++ D  RP        +  LS  +Y+   AQ + E+KKR 
Sbjct: 166 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 220

>pdb|3V4N|A Chain A, The Biochemical And Structural Basis For Inhibition Of Enterococcus Faecalis Hmg-coa Synthatse, Mvas, By Hymeglusin Length = 388

Iteration: 1
 Score =  116 bits (291), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 78/236 (33%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA 
Sbjct: 6   MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 65
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+A Y  TAG
Sbjct: 66  AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAG 122
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           LQ+A N +   + P  K LV+A DI+++ +              EP+ GAGAVAML+S +
Sbjct: 123 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVSSE 170
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P I       N   + ++ D  RP        +  LS  +Y+   AQ + E+KKR 
Sbjct: 171 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 225

>pdb|1YSL|A Chain A, Crystal Structure Of Hmg-Coa Synthase From Enterococcus Faecalis With Acetoacetyl-Coa Ligand Length = 402

Iteration: 1
 Score =  115 bits (288), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/236 (32%), Positives = 126/236 (53%), Gaps = 18/236 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA 
Sbjct: 20  MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAE 79
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+A Y  TAG
Sbjct: 80  AI---LTKEDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAG 136
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           LQ+A N +   + P  K LV+A DI+++ +              EP+ GAGAVAML++ +
Sbjct: 137 LQLAKNHV--ALHPDKKVLVVAADIAKYGLNSGG----------EPTQGAGAVAMLVASE 184
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRV 235
           P I       N   + ++ D  RP        +  LS  +Y+   AQ + E+KKR 
Sbjct: 185 PRILALK-EDNVMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRT 239

>pdb|1XPK|C Chain C, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 18/235 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ IN Y    ++D+ +LA+ R++D  +F   + Q + +VS   +D VS   NAA 
Sbjct: 1   MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +I   ++ DK  I ++I  +ES +D  K+ +  IH+ LG+    R FE+K+ACY+ T  
Sbjct: 61  DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +Q+A +++ ++  P  K LVIATD +R+ +              EP+ GAGAVAM+I+  
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
           P I   +  +   Y+ +V D  RP        +  LS  +Y+    QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219

>pdb|1TVZ|A Chain A, Crystal Structure Of 3-hydroxy-3-methylglutaryl-coenzyme A Synthase From Staphylococcus Aureus Length = 388

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ IN Y    ++D+ +LA+ R++D  +F   + Q + +VS   +D VS   NAA 
Sbjct: 1   MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +I   ++ DK  I ++I  +ES +D  K+ +  IH+ LG+    R FE+K+A Y+ T  
Sbjct: 61  DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +Q+A +++ ++  P  K LVIATD +R+ +              EP+ GAGAVAM+I+  
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
           P I   +  +   Y+ +V D  RP        +  LS  +Y+    QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219

>pdb|1XPK|B Chain B, Crystal Structure Of Staphylococcus Aureus Hmg-Coa Synthase With Hmg- Coa And With Acetoacetyl-Coa And Acetylated Cysteine Length = 388

Iteration: 1
 Score =  105 bits (263), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 77/235 (32%), Positives = 127/235 (54%), Gaps = 18/235 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAA 60
           + +GI+ IN Y    ++D+ +LA+ R++D  +F   + Q + +VS   +D VS   NAA 
Sbjct: 1   MTIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +I   ++ DK  I ++I  +ES +D  K+ +  IH+ LG+    R FE+K+A Y+ T  
Sbjct: 61  DII---TDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEAXYAATPA 117
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +Q+A +++ ++  P  K LVIATD +R+ +              EP+ GAGAVAM+I+  
Sbjct: 118 IQLAKDYLATR--PNEKVLVIATDTARYGLNSGG----------EPTQGAGAVAMVIAHN 165
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKR 234
           P I   +  +   Y+ +V D  RP        +  LS  +Y+    QS+ EY KR
Sbjct: 166 PSILALNEDAVA-YTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKR 219

>pdb|3LEH|A Chain A, The Crystal Structure Of Smu.943c From Streptococcus Mutans Ua159 Length = 425

Iteration: 1
 Score = 97.4 bits (241), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 68/235 (28%), Positives = 119/235 (50%), Gaps = 18/235 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRF-ENLLMQQKSVSLPYEDPVSFAINAAA 60
           +++GI+ I        +++ +LA+ R  D  +F + LL+   S++   +D V+ A  +A 
Sbjct: 35  MRIGIDKIGFTSSQYVLNMKDLAEARGEDPQKFSKGLLLNALSIAPITDDVVTLAAGSAN 94
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +   L+  DK  I+++I  +ES +D  K+ + Y+H  LG+    R FE+K+ACYS TA 
Sbjct: 95  EI---LTAEDKEKIDMVILATESSVDQSKAGAVYVHSLLGIQPFARSFEMKEACYSATAA 151
Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           L  A   +  +  P  + LV+A+DI+++ +              E + GAG++AML+   
Sbjct: 152 LNYAKLHV--EKHPDTRVLVLASDIAKYGIGTPG----------ESTQGAGSIAMLVKKD 199
Query: 181 PEIFQFDIGSNGYYSFEVMDTCRP-IPDSEAGNADLSLLSYLDCCAQSFKEYKKR 234
           P I      +    + ++MD  RP    +   N   S   YLD    ++ EY+KR
Sbjct: 200 PRILILHDETLA-QTRDIMDFWRPNYTTTPYVNGMYSTKQYLDMLKTTWAEYQKR 253

>pdb|2WYA|A Chain A, Crystal Structure Of Human Mitochondrial 3-Hydroxy-3- Methylglutaryl-Coenzyme A Synthase 2 (Hmgcs2) Length = 460

Iteration: 1
 Score = 63.5 bits (153), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 65/241 (26%), Positives = 110/241 (45%), Gaps = 24/241 (9%)
Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK----SVSLPYEDPVSFAINAA 59
           VGI A+ +Y  + ++D  +L KY  ++  ++   L Q +    SV    ED  S  +   
Sbjct: 6   VGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQ---EDINSLCLTVV 62
Query: 60  APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSC 117
             L++ +  +  +S+  +   +E+ ID  K++ T +      + N  +   +   ACY  
Sbjct: 63  QRLMERI-QLPWDSVGRLEVGTETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGG 121
Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
           TA L  A N++ S    G  A+V+  DI+ +     +           P+GGAGAVAMLI
Sbjct: 122 TASLFNAANWMESSSWDGRYAMVVCGDIAVYPSGNAR-----------PTGGAGAVAMLI 170
Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
             K  +   + G  G +   V D  +P   SE    D  LS+  YL    + +  Y+K++
Sbjct: 171 GPKAPL-ALERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKKI 229
Query: 236 Q 236
           Q
Sbjct: 230 Q 230

>pdb|2P8U|A Chain A, Crystal Structure Of Human 3-Hydroxy-3-Methylglutaryl Coa Synthase I Length = 478

Iteration: 1
 Score = 62.4 bits (150), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 106/240 (44%), Gaps = 18/240 (7%)
Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAAA 60
           + VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +    
Sbjct: 23  MDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQ 82
Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FELKQACYSCT 118
            L++  +N+  + I  +   +E+ ID  KS+ T +      + N  +   +   A Y  T
Sbjct: 83  NLMER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNAXYGGT 141
Query: 119 AGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLIS 178
           A +  A+N+I S    G  ALV+A DI+ +     +           P+GG GAVA+LI 
Sbjct: 142 AAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNAR-----------PTGGVGAVALLIG 190
Query: 179 DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRVQ 236
               +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y K++ 
Sbjct: 191 PNAPLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKIH 249

>pdb|2F82|A Chain A, Hmg-Coa Synthase From Brassica Juncea In The Apo-Form Length = 450

Iteration: 1
 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 55/184 (29%), Positives = 79/184 (42%), Gaps = 22/184 (11%)
Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCR 106
           ED +S + NA   L++    ID   I  +   SE+ ID  KS+ T++        N +  
Sbjct: 50  EDVISMSFNAVTSLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVE 108
Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEP 166
             +   ACY  TA L   +N++ S    G   LVI TD + +     +           P
Sbjct: 109 GVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR-----------P 157
Query: 167 SGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSL-----LSY 220
           +GGA A+AMLI  D P +F+  +   G +   V D  +P   SE    D  L     L  
Sbjct: 158 TGGAAAIAMLIGPDAPIVFESKL--RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMA 215
Query: 221 LDCC 224
           LD C
Sbjct: 216 LDSC 219

>pdb|2FA3|A Chain A, Hmg-Coa Synthase From Brassica Juncea In Complex With Acetyl-Coa And Acetyl-Cys117 Length = 450

Iteration: 1
 Score = 50.8 bits (120), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 54/184 (29%), Positives = 78/184 (42%), Gaps = 22/184 (11%)
Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCR 106
           ED +S + NA   L++    ID   I  +   SE+ ID  KS+ T++        N +  
Sbjct: 50  EDVISMSFNAVTSLLEKY-KIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVE 108
Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEP 166
             +   A Y  TA L   +N++ S    G   LVI TD + +     +           P
Sbjct: 109 GVDSTNAXYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVYAEGPAR-----------P 157
Query: 167 SGGAGAVAMLIS-DKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSL-----LSY 220
           +GGA A+AMLI  D P +F+  +   G +   V D  +P   SE    D  L     L  
Sbjct: 158 TGGAAAIAMLIGPDAPIVFESKL--RGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMA 215
Query: 221 LDCC 224
           LD C
Sbjct: 216 LDSC 219

>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii Length = 317

Iteration: 1
 Score = 46.6 bits (109), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 75/157 (47%), Gaps = 11/157 (7%)
Query: 39  MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
           ++++ ++ P E   +    AA   I+ ++ I+K+ I LI+  + S      S +  I   
Sbjct: 39  IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 97
Query: 99  LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
           LG+ + C  F++  AC   T  L +A  ++ S       ALV+ +D+ +R     D+  +
Sbjct: 98  LGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
            +   F +   GAGA  +  S++P I    + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185

>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii (Fabh) From Escherichia Coli Length = 317

Iteration: 1
 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 39/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39  MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
           ++++ ++ P E   +    AA   I+  + I+K+ I LI+  + S      S +  I   
Sbjct: 39  IRERHIAAPNETVSTXGFEAATRAIE-XAGIEKDQIGLIVVATTSATHAFPSAACQIQSX 97
Query: 99  LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
           LG+ + C  F++  AC   T  L +A  ++ S       ALV+ +D+ +R     D+  +
Sbjct: 98  LGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
            +   F +   GAGA  +  S++P I    + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185

>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor Length = 317

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39  MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
           ++++ ++ P E   +    AA   I+ ++ I+K+ I LI+  + S      S +  I   
Sbjct: 39  IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 97
Query: 99  LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
           LG+ + C  F++  A    T  L +A  ++ S       ALV+ +D+ +R     D+  +
Sbjct: 98  LGI-KGCPAFDVAAAXAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 154
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
            +   F +   GAGA  +  S++P I    + ++G Y
Sbjct: 155 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 185

>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh Length = 340

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 38/157 (24%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 39  MQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY 98
           ++++ ++ P E   +    AA   I+ ++ I+K+ I LI+  + S      S +  I   
Sbjct: 62  IRERHIAAPNETVSTMGFEAATRAIE-MAGIEKDQIGLIVVATTSATHAFPSAACQIQSM 120
Query: 99  LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNEL 157
           LG+ + C  F++  A    T  L +A  ++ S       ALV+ +D+ +R     D+  +
Sbjct: 121 LGI-KGCPAFDVAAAXAGFTYALSVADQYVKSGAVK--YALVVGSDVLARTCDPTDRGTI 177
Query: 158 TMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYY 194
            +   F +   GAGA  +  S++P I    + ++G Y
Sbjct: 178 II---FGD---GAGAAVLAASEEPGIISTHLHADGSY 208

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	245
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	7e-64
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	2e-56
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	6e-56
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	1e-54
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	1e-48
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	3e-47
1u0m_A	382	Putative polyketide synthase; type III polyketide	1e-11
1i88_A	389	CHS2, chalcone synthase 2; polyketide synthase, tr	3e-11
1ee0_A	402	2-pyrone synthase; polyketide synthase, thiolase f	6e-11
3ov2_A	393	Curcumin synthase; type III polyketide synthase, t	1e-10
1ted_A	393	PKS18; thiolase fold, substrate binding tunnel, tr	1e-10
3awk_A	402	Chalcone synthase-like polyketide synthase; type I	4e-10
3oit_A	387	OS07G0271500 protein; type III polyketide synthase	1e-09
3v7i_A	413	Putative polyketide synthase; type III polyketide	1e-09
4efi_A	354	3-oxoacyl-(acyl-carrier protein) synthase; structu	2e-09
2h84_A	374	Steely1; thiolase-fold, type III polyketide syntha	2e-09
3gwa_A	365	3-oxoacyl-(acyl-carrier-protein) synthase III; str	9e-09
3s3l_A	357	CERJ; acyltransferase, FABH homologue, KS III homo	1e-08
3e1h_A	465	PKSIIINC, putative uncharacterized protein; resorc	4e-08
4dfe_A	333	3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci	9e-08
1mzj_A	339	Beta-ketoacylsynthase III; beta-ketosynthase, arom	1e-07
1hnj_A	317	Beta-ketoacyl-acyl carrier protein synthase III; F	3e-07
3il3_A	323	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	4e-07
1u6e_A	335	3-oxoacyl-[acyl-carrier-protein] synthase III; tra	5e-07
3s21_A	345	3-oxoacyl-[ACP] synthase III; non-decarboxylative	9e-07
3il6_A	321	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	1e-06
2ebd_A	309	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	8e-06
3h78_A	359	PQS biosynthetic enzyme; PQSD, anthranilic acid, a	1e-05
2x3e_A	331	3-oxoacyl-[acyl-carrier-protein] synthase 3; HED,	1e-04
3led_A	392	3-oxoacyl-acyl carrier protein synthase III; struc	1e-04

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A* Length = 396

 Score =  203 bits (518), Expect = 7e-64
 Identities = 77/240 (32%), Positives = 125/240 (52%), Gaps = 18/240 (7%)

Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRF-ENLLMQQKSVSLPYEDPVSFAINAAA 60
           + +GI+ IN Y    ++D+ +LA+ R++D  +F   +   + +VS   +D VS   NAA 
Sbjct: 1   MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK 60

Query: 61  PLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAG 120
            +I +    DK  I ++I  +ES +D  K+ +  IH+ LG+    R FE+K+ACY+ T  
Sbjct: 61  DIITD---EDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPA 117

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           +Q+A +++ +   P  K LVIATD +R+          +     EP+ GAGAVAM+I+  
Sbjct: 118 IQLAKDYLAT--RPNEKVLVIATDTARY---------GLNSG-GEPTQGAGAVAMVIAHN 165

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYKI 239
           P I   +  +  Y   +V D  RP        +  LS  +Y+    QS+ EY KR    +
Sbjct: 166 PSILALNEDAVAYTE-DVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSL 224

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A* Length = 388

 Score =  184 bits (467), Expect = 2e-56
 Identities = 76/241 (31%), Positives = 124/241 (51%), Gaps = 18/241 (7%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAA 59
            + +GI+ I+ +    +ID+  LA+ R +D  +F   + Q Q +V+   +D V+FA NAA
Sbjct: 5   SMTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAA 64

Query: 60  APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTA 119
             ++      DK +I+++I  +ES ID  K+ +  +H  +G+    R FE+K+A Y  TA
Sbjct: 65  EAILTK---EDKEAIDMVIVGTESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATA 121

Query: 120 GLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISD 179
           GLQ+A N +     P  K LV+A DI+++ +              EP+ GAGAVAML+S 
Sbjct: 122 GLQLAKNHVAL--HPDKKVLVVAADIAKYGLNS----------GGEPTQGAGAVAMLVSS 169

Query: 180 KPEIFQFDIGSNGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYK 238
           +P I      +    + ++ D  RP        +  LS  +Y+   AQ + E+KKR    
Sbjct: 170 EPRILALKEDN-VMLTQDIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLD 228

Query: 239 I 239
            
Sbjct: 229 F 229

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens} Length = 478

 Score =  181 bits (460), Expect = 1e-54
 Identities = 67/241 (27%), Positives = 105/241 (43%), Gaps = 18/241 (7%)

Query: 1   MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQK-SVSLPYEDPVSFAINAA 59
            + VGI A+ +Y  S ++D  EL KY  +D  ++   L Q K       ED  S  +   
Sbjct: 22  SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVV 81

Query: 60  APLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSC 117
             L++  +N+  + I  +   +E+ ID  KS+ T +        N +    +   ACY  
Sbjct: 82  QNLMER-NNLSYDCIGRLEVGTETIIDKSKSVKTNLMQLFEESGNTDIEGIDTTNACYGG 140

Query: 118 TAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI 177
           TA +  A+N+I S    G  ALV+A DI+ +                 P+GG GAVA+LI
Sbjct: 141 TAAVFNAVNWIESSSWDGRYALVVAGDIAVYATGNA-----------RPTGGVGAVALLI 189

Query: 178 SDKPEIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNAD--LSLLSYLDCCAQSFKEYKKRV 235
                +  F+ G  G +     D  +P   SE    D  LS+  YL    + +  Y K++
Sbjct: 190 GPNAPLI-FERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKKI 248

Query: 236 Q 236
            
Sbjct: 249 H 249

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A* Length = 450

 Score =  161 bits (408), Expect = 3e-47
 Identities = 61/238 (25%), Positives = 94/238 (39%), Gaps = 18/238 (7%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
           VGI A+++Y     +    L  +      ++   L Q   +     ED +S + NA   L
Sbjct: 4   VGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSL 63

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAG 120
           ++    ID   I  +   SE+ ID  KS+ T++        N +    +   ACY  TA 
Sbjct: 64  LEK-YKIDPKQIGRLEVGSETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAA 122

Query: 121 LQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
           L   +N++ S    G   LVI TD + +                 P+GGA A+AMLI   
Sbjct: 123 LLNCVNWVESNSWDGRYGLVICTDSAVYAEGPA-----------RPTGGAAAIAMLIGPD 171

Query: 181 PEIFQFDIGSNGYYSFEVMDTCRPIPDSE--AGNADLSLLSYLDCCAQSFKEYKKRVQ 236
             I  F+    G +   V D  +P   SE    +  LS   YL      +K    + +
Sbjct: 172 API-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFE 228

>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2 Length = 382

 Score = 62.8 bits (153), Expect = 1e-11
 Identities = 26/159 (16%), Positives = 58/159 (36%), Gaps = 23/159 (14%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RLFELKQA 113
                   +D+ + +    I++II  S +G     S++ ++ + +G +    ++   +  
Sbjct: 88  VPAVIQRALDD-AELLATDIDVIIYVSCTGFMM-PSLTAWLINEMGFDSTTRQIPIAQLG 145

Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTM-EWAFFEPSGGAG 171
           C +  A +  A +F  +   P A AL++A +  S  +   D    ++     F    G G
Sbjct: 146 CAAGGAAINRAHDFCTA--YPEANALIVACEFCSLCYQPTDLGVGSLLCNGLF----GDG 199

Query: 172 AVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
             A ++  +                 +       IP +E
Sbjct: 200 IAAAVVRGRGGT-----------GVRLERNGSYLIPKTE 227

>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A Length = 393

 Score = 59.9 bits (145), Expect = 1e-10
 Identities = 39/158 (24%), Positives = 62/158 (39%), Gaps = 15/158 (9%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFELKQA 113
           A  AA   I       K+ I  ++ CS SGID        +   LGL     RL    QA
Sbjct: 106 AKEAAEKAIKE-WGRPKSEITHLVFCSISGIDM-PGADYRLATLLGLPLTVNRLMIYSQA 163

Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
           C+   A L++A +   +  + GA+ LV+A +I    F   +  E   E    +   G GA
Sbjct: 164 CHMGAAMLRIAKDLAEN--NRGARVLVVACEITVLSFRGPN--EGDFEALAGQAGFGDGA 219

Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
            A+++   P              +E+       + +S+
Sbjct: 220 GAVVVGADPL------EGIEKPIYEIAAAMQETVAESQ 251

>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A Length = 393

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 27/158 (17%), Positives = 55/158 (34%), Gaps = 16/158 (10%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQA- 113
           A++ +   +          I L++  + +G      +   I   LGL+ +     +    
Sbjct: 117 AVDVSKRALAG-LPYRAAEIGLLVLATSTGFIA-PGVDVAIVKELGLSPSISRVVVNFMG 174

Query: 114 CYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGA 172
           C +    L  A N++ +   P  KALV+  ++ S   V  D     +  + F    G G 
Sbjct: 175 CAAAMNALGTATNYVRA--HPAMKALVVCIELCSVNAVFADDINDVVIHSLF----GDGC 228

Query: 173 VAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
            A++I                    V  +  + + ++E
Sbjct: 229 AALVIGASQ-----VQEKLEPGKVVVRSSFSQLLDNTE 261

>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A Length = 387

 Score = 56.8 bits (137), Expect = 1e-09
 Identities = 34/187 (18%), Positives = 66/187 (35%), Gaps = 16/187 (8%)

Query: 26  YRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI 85
                     +       + +  +     A  AA   I          I  ++  + SG 
Sbjct: 71  LSAHPEFVDRDAPSLDARLDIAADAVPELAAEAAKKAIAE-WGRPAADITHLVVTTNSGA 129

Query: 86  DFGKSMSTYIHHYLGLNRNCRLFELKQ-ACYSCTAGLQMAINFILSKVSPGAKALVIATD 144
                +   +   LGL  + R   L    C++  A L++A +    + S GA+ LV+A +
Sbjct: 130 HV-PGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLA--ENSRGARVLVVAAE 186

Query: 145 I-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-C 202
           +   +F   D  E        +   G GA A+++    +  +  +       FE++    
Sbjct: 187 LTLMYFTGPD--EGCFRTLLVQGLFGDGAAAVIVGADADDVERPL-------FEIVSAAQ 237

Query: 203 RPIPDSE 209
             IP+S+
Sbjct: 238 TIIPESD 244

>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor} Length = 413

 Score = 56.5 bits (136), Expect = 1e-09
 Identities = 26/165 (15%), Positives = 58/165 (35%), Gaps = 21/165 (12%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E   ++   AA   +   + +D   ++ +IT + +       +   + + L L  +  L 
Sbjct: 135 EAVQAYGERAARGALQI-AGLDVADVDCLITSNSTTPAL-PGLDVALANRLPLRGDTMLL 192

Query: 109 ELKQ-ACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTM-EWAFFE 165
              Q AC + T  L +A + + +   P    LV+ ++  S  +   D    ++     F 
Sbjct: 193 PATQWACVAGTRSLALAADLVAA--DPDRVVLVVISEALSTTYQPADDTLESLIVRLLF- 249

Query: 166 PSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
                 AVA +++ +P                +       +P + 
Sbjct: 250 ---ADTAVAAVVTGRPR---------PESVLRLDAAWHHTLPGTR 282

>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans} Length = 354

 Score = 56.0 bits (136), Expect = 2e-09
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 30/151 (19%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
              A   L+        +SI+ +I  S++      + +  +   L L  +C   ++   C
Sbjct: 70  CRKAGEKLLAG-LGWQADSIDALIFVSQTPNYRLPATAFVLQAELDLPASCLALDINLGC 128

Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA-------FF 164
                 L + +N I +    GA  + L+   D  S+           ++         F 
Sbjct: 129 SGYPQALWLGMNLIQT----GAAKRVLLAVGDTISKM----------IDPTDRSTSLLF- 173

Query: 165 EPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
              G      A+  S+      F IG++G  
Sbjct: 174 ---GDAGTMTALETSNGDAAAHFIIGADGKG 201

>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum} Length = 374

 Score = 56.0 bits (135), Expect = 2e-09
 Identities = 36/161 (22%), Positives = 66/161 (40%), Gaps = 18/161 (11%)

Query: 52  VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
              A  A    + +    DK  I  I++ + +GI     ++  +   LGLN++     L 
Sbjct: 96  PDLAQQACLRALKD-WGGDKGDITHIVSVTSTGIII-PDVNFKLIDLLGLNKDVERVSLN 153

Query: 112 Q-ACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGG 169
              C +  + L+ A +    K SP  + LV+ T++ S  F   D  +  +  + F     
Sbjct: 154 LMGCLAGLSSLRTAASLA--KASPRNRILVVCTEVCSLHFSNTDGGDQMVASSIF----A 207

Query: 170 AGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRP-IPDSE 209
            G+ A +I   P I +  +       +EVM +     P++E
Sbjct: 208 DGSAAYIIGCNPRIEETPL-------YEVMCSINRSFPNTE 241

>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A Length = 365

 Score = 54.1 bits (131), Expect = 9e-09
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 47  PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR 106
           P E     A  AA  L      +  + ++ +I C+++      + +  + H LG+  +  
Sbjct: 76  PRETAADLAYEAARKLFAQ-GAVGADQVDFVILCTQAPDYVLPTSACMLQHRLGIPTHAG 134

Query: 107 LFELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAF 163
             ++   C     GL +A   + +    GA    L++  D  S++    DK+  T+    
Sbjct: 135 ALDVNLGCSGYVYGLSLAKGLVET----GAARCVLLLTADTYSKYLHPLDKSVRTL---- 186

Query: 164 FEPSG-GAGAVAML--ISDKPEIFQFDIGSNGYY 194
           F   G GA A A++    +   I  F  G++G  
Sbjct: 187 F---GDGASATAVIAEHGELERIGPFVFGTDGRG 217

>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B* Length = 357

 Score = 53.4 bits (129), Expect = 1e-08
 Identities = 29/152 (19%), Positives = 55/152 (36%), Gaps = 16/152 (10%)

Query: 47  PYEDPVSFAINAAAPLIDNLSNIDKNSIELII--TCSESGIDFGKSMSTYIHHYLGLNRN 104
             + P   A  AA   +    ++D   + L++  +    GID     ++Y+ H     R+
Sbjct: 50  EEDAPPRMAARAARAALGR-GDVDPADVSLVLHSSLWFQGIDL-WPAASYVAHEAVG-RH 106

Query: 105 CRLFELKQACYSCTAGLQMAINFILSKVSPGAKA-LVIATDI-SRFFVTEDKNELTMEWA 162
              F L Q C      +++A  ++ S +  G  A L              +  ++TM   
Sbjct: 107 VPAFGLAQRCNGGMGAIELAGAYLGSGIGAGHAALLTTGDRFAGPRIDRWNSVDVTM--- 163

Query: 163 FFEPSG-GAGAVAMLISDKPE-IFQFDIGSNG 192
           +    G GA A+ +   D    +     G + 
Sbjct: 164 Y----GDGAAALVLSTRDGFARVLSTATGVDN 191

>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa} Length = 465

 Score = 52.4 bits (125), Expect = 4e-08
 Identities = 30/164 (18%), Positives = 58/164 (35%), Gaps = 13/164 (7%)

Query: 52  VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
           V  A+ A+   +   + +    I  +++ + +          Y+   LGL+       L 
Sbjct: 111 VPLAVEASRKAMAE-ARLVPAQITHMVSTTCTDSAN-PGYDHYVAKELGLSDRLEKVLLH 168

Query: 112 Q-ACYSCTAGLQMAINFILSKVS--PGAKALVIATDIS--RFFVTEDKNELTMEWAFFEP 166
              C    A L+ A N  L   +    A+ LV+A ++S        +  +   E      
Sbjct: 169 GIGCSGGLAALRTAANLCLGHTARGKPARILVLALEVSTTMVRSELESIDALQETRIGIA 228

Query: 167 SGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDT-CRPIPDSE 209
                A A+++S+                ++++    R IPDSE
Sbjct: 229 LFSDCASAVILSNGI-----GEAPGKPAIYDLLGWENRVIPDSE 267

>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans} Length = 333

 Score = 51.0 bits (123), Expect = 9e-08
 Identities = 36/155 (23%), Positives = 64/155 (41%), Gaps = 26/155 (16%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
                 A  A+   I+  ++ID  SI+LII  + +      S +  + + LG+  +   F
Sbjct: 63  VTTSDLAFIASQRAIEA-ADIDPQSIDLIIVATSTPDFVFPSTACLLQNKLGIRNHGAAF 121

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWA----- 162
           +++  C      +  A +FI S       ALVI  +  SR           +++      
Sbjct: 122 DVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRI----------LDFKDRTTC 169

Query: 163 --FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
             F    G GAGAV +  SD+P +    + ++G +
Sbjct: 170 VLF----GDGAGAVILQASDEPGVLASALHADGSH 200

>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2 Length = 339

 Score = 50.6 bits (122), Expect = 1e-07
 Identities = 37/152 (24%), Positives = 62/152 (40%), Gaps = 19/152 (12%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E      + A+   +++ + +D   I+L++  + +       +S  I H LG   N   F
Sbjct: 58  ETIQVMGVAASRRALEH-AGVDPAEIDLVVVSTMTNFVHTPPLSVAIAHELGA-DNAGGF 115

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAF-F 164
           +L  AC      L +A + + S    G     LV+AT+  +      D++      +F F
Sbjct: 116 DLSAACAGFCHALSIAADAVES----GGSRHVLVVATERMTDVIDLADRS--L---SFLF 166

Query: 165 EPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
              G GAGA  +  SD P I     G +G   
Sbjct: 167 ---GDGAGAAVVGPSDVPGIGPVVRGIDGTGL 195

>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A* Length = 317

 Score = 49.4 bits (119), Expect = 3e-07
 Identities = 38/155 (24%), Positives = 64/155 (41%), Gaps = 27/155 (17%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E   +    AA   I+  + I+K+ I LI+  + S      S +  I   LG+ + C  F
Sbjct: 49  ETVSTMGFEAATRAIEM-AGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAF 106

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWA----- 162
           ++  AC   T  L +A  ++ S       ALV+ +D+ +R            +       
Sbjct: 107 DVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLART----------CDPTDRGTI 154

Query: 163 --FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
             F    G GAGA  +  S++P I    + ++G Y
Sbjct: 155 IIF----GDGAGAAVLAASEEPGIISTHLHADGSY 185

>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae} Length = 323

 Score = 49.0 bits (118), Expect = 4e-07
 Identities = 39/157 (24%), Positives = 61/157 (38%), Gaps = 31/157 (19%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E   +    AA   I+  + I+   IELII  + S      S +  +   L +  +   F
Sbjct: 56  ETVATMGFEAAKNAIEA-AQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAISF 113

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
           +L  AC      L +A  FI +    G   KALVI +D+ SR           ++     
Sbjct: 114 DLAAACTGFVYALSVADQFIRA----GKVKKALVIGSDLNSRK----------LDETDRS 159

Query: 163 ----FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYY 194
               F    G GAGAV +  S++  I    + ++   
Sbjct: 160 TVVLF----GDGAGAVILEASEQEGIISTHLHASADK 192

>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A Length = 335

 Score = 48.7 bits (117), Expect = 5e-07
 Identities = 30/150 (20%), Positives = 49/150 (32%), Gaps = 15/150 (10%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E   S A  A    + N + +    I+ +I  + +        +  +   LG       F
Sbjct: 59  ESAASMATEACRRALSN-AGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLGAK-GILGF 116

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAF-FEP 166
           +L          L  A + I    +  A  LV+ T+  S      D+        F F  
Sbjct: 117 DLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYDRG--N---CFIF-- 167

Query: 167 SG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
              GA AV +  +    I     GS+G  +
Sbjct: 168 -ADGAAAVVVGETPFQGIGPTVAGSDGEQA 196

>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A Length = 345

 Score = 48.0 bits (115), Expect = 9e-07
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 23/144 (15%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
                 A  AA   + + +NI    I L+I  S S      S ++ +   LG++ +C  F
Sbjct: 66  VQASDAATQAARKALID-ANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTF 124

Query: 109 ELKQAC----YSCTAGLQMAINFILSKVSPGA--KALVIATDISRFFVTEDKNELTMEWA 162
           ++  AC         G+ +A   +      G    ALV+  + +     +    +T    
Sbjct: 125 DVANACLAFIN----GMDIAARMLER----GEIDYALVVDGETANLVYEKTLERMTSPDV 176

Query: 163 FFEPSG--------GAGAVAMLIS 178
             E           G GA AM+++
Sbjct: 177 TEEEFRNELAALTLGCGAAAMVMA 200

>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A* Length = 321

 Score = 47.5 bits (114), Expect = 1e-06
 Identities = 29/158 (18%), Positives = 54/158 (34%), Gaps = 31/158 (19%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E+        A  L++  S    + I+ I+  + +      S++  +   +G       F
Sbjct: 50  ENTSDLCHQVAKQLLEK-SGKQASEIDFILVATVTPDFNMPSVACQVQGAIGA-TEAFAF 107

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
           ++  AC      L MA   +LS    G     LVI  +  S+           ++W    
Sbjct: 108 DISAACSGFVYALSMAEKLVLS----GRYQTGLVIGGETFSKM----------LDWTDRS 153

Query: 163 ----FFEPSG-GAGAVAMLISDKPEIFQFDIGSNGYYS 195
               F    G GA  V +  ++ P      + ++G   
Sbjct: 154 TAVLF----GDGAAGVLIEAAETPHFLNEKLQADGQRW 187

>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus} Length = 309

 Score = 44.8 bits (107), Expect = 8e-06
 Identities = 36/158 (22%), Positives = 57/158 (36%), Gaps = 32/158 (20%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           E     A  AA   +   +N+    ++LII  + +      S +  +   L   +    F
Sbjct: 48  ETITYMATQAAKEALRE-ANLSPEELDLIILATLTPQKRFPSTACLVQAQLKA-KGVYAF 105

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
           ++  AC      L +A +FI S    G     LVI  +  S            ++W    
Sbjct: 106 DISAACSGFIYALDIADSFIKS----GKAKNVLVIGAEKLSEA----------VDWEDRS 151

Query: 163 ----FFEPSG-GAGAVAMLIS-DKPEIFQFDIGSNGYY 194
               F    G GAGAV +  S DK +I    + + G  
Sbjct: 152 TCVLF----GDGAGAVVVTRSEDKSDILATRMYAEGSL 185

>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A* Length = 359

 Score = 44.5 bits (106), Expect = 1e-05
 Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 17/152 (11%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
           +   +  + AA   I+  + +    I+L++  + S      S +  I   LGL R+  + 
Sbjct: 72  QAVSALMVPAARQAIEA-AGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGL-RHIPVL 129

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWAFFE 165
           +++        GLQMA   IL+    G     LV+  ++ S+     D+           
Sbjct: 130 DIRAQASGLLYGLQMARGQILA----GLARHVLVVCGEVLSKRMDCSDRGRNLS--ILL- 182

Query: 166 PSG-GAGAVAMLISDKPE--IFQFDIGSNGYY 194
             G GAGAV +   +  E  +    +G++G Y
Sbjct: 183 --GDGAGAVVVSAGESLEDGLLDLRLGADGNY 212

>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa} Length = 331

 Score = 41.7 bits (99), Expect = 1e-04
 Identities = 33/160 (20%), Positives = 61/160 (38%), Gaps = 36/160 (22%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
                 A+ AA+  + + + ++   ++ ++  + +G     + +  +   LGL      F
Sbjct: 51  LGSGDLALRAASAALAS-AGLE--RVDAVVLATSTGDFCCPATAPRVAARLGL-VGALAF 106

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRFFVTEDKNELTMEWA--- 162
           +L  A      GL    + I +    G    AL++  D  S            ++ A   
Sbjct: 107 DLSAAATGFVYGLASVGSLISA----GLADSALLVGVDTFSHT----------LDPADRS 152

Query: 163 ----FFEPSG-GAGAVAMLISDKPE---IFQFDIGSNGYY 194
               F    G GAGAV +   D  E   +  FD+GS+G+ 
Sbjct: 153 TRALF----GDGAGAVVLRAGDAEEEGALLAFDLGSDGHQ 188

>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris} Length = 392

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 22/97 (22%), Positives = 41/97 (42%), Gaps = 10/97 (10%)

Query: 55  AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQAC 114
           A+ AA   I+      +  I  ++    +      +M+  + + LGL      F++  AC
Sbjct: 121 AVTAAEQAIER-WGKPRERIGAVLCACSNMQRAYPAMAIEVQNALGLGGFA--FDMNVAC 177

Query: 115 YSCTAGLQMAINFILSKVSPGA--KALVIATDI-SRF 148
            S T GL+ A +F+      G+    L++  +I S  
Sbjct: 178 SSATFGLKTAADFVGG----GSVDAVLMVNPEICSGH 210

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	245
2v4w_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	100.0
4ewp_A	350	3-oxoacyl-[acyl-carrier-protein] synthase 3; trans	100.0
3sqz_A	425	Putative hydroxymethylglutaryl-COA synthase; thiol	100.0
3v4n_A	388	HMG-COA synthase; hydroxymethylglutaryl-COA syntha	100.0
3il3_A	323	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	100.0
3gwa_A	365	3-oxoacyl-(acyl-carrier-protein) synthase III; str	100.0
4efi_A	354	3-oxoacyl-(acyl-carrier protein) synthase; structu	100.0
3h78_A	359	PQS biosynthetic enzyme; PQSD, anthranilic acid, a	100.0
4dfe_A	333	3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci	100.0
3il6_A	321	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	100.0
3led_A	392	3-oxoacyl-acyl carrier protein synthase III; struc	100.0
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	100.0
3s21_A	345	3-oxoacyl-[ACP] synthase III; non-decarboxylative	100.0
2f82_A	450	HMG-COA synthase; HMGS1, transferase; 2.10A {Brass	100.0
2p8u_A	478	Hydroxymethylglutaryl-COA synthase, cytoplasmic; h	100.0
2wya_A	460	Hydroxymethylglutaryl-COA synthase, mitochondrial;	100.0
1hnj_A	317	Beta-ketoacyl-acyl carrier protein synthase III; F	100.0
2x3e_A	331	3-oxoacyl-[acyl-carrier-protein] synthase 3; HED,	100.0
3s3l_A	357	CERJ; acyltransferase, FABH homologue, KS III homo	100.0
1mzj_A	339	Beta-ketoacylsynthase III; beta-ketosynthase, arom	100.0
2ebd_A	309	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	100.0
1u6e_A	335	3-oxoacyl-[acyl-carrier-protein] synthase III; tra	100.0
1zow_A	313	3-oxoacyl-[acyl-carrier-protein] synthase III; FAB	100.0
1ub7_A	322	3-oxoacyl-[acyl-carrier protein] synthase; fatty a	100.0
3ov2_A	393	Curcumin synthase; type III polyketide synthase, t	100.0
3oit_A	387	OS07G0271500 protein; type III polyketide synthase	100.0
3euo_A	379	Type III pentaketide synthase; alpha helix, acyltr	100.0
1ted_A	393	PKS18; thiolase fold, substrate binding tunnel, tr	100.0
3e1h_A	465	PKSIIINC, putative uncharacterized protein; resorc	100.0
2d3m_A	406	Pentaketide chromone synthase; chalcone synthase,	100.0
1ee0_A	402	2-pyrone synthase; polyketide synthase, thiolase f	100.0
1u0m_A	382	Putative polyketide synthase; type III polyketide	99.98
3awk_A	402	Chalcone synthase-like polyketide synthase; type I	99.98
2p0u_A	413	Stilbenecarboxylate synthase 2; polyketide synthas	99.98
1i88_A	389	CHS2, chalcone synthase 2; polyketide synthase, tr	99.98
3a5r_A	387	Benzalacetone synthase; chalcone synthase, type II	99.97
1xes_A	413	Dihydropinosylvin synthase; native structure, tran	99.97
2h84_A	374	Steely1; thiolase-fold, type III polyketide syntha	99.97
3v7i_A	413	Putative polyketide synthase; type III polyketide	99.97
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	99.96
3lma_A	347	Stage V sporulation protein AD (spovad); NESG, str	99.85
4dd5_A	396	Acetyl-COA acetyltransferase; structural genomics,	99.77
4e1l_A	395	Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich,	99.74
3o04_A	413	LMO2201 protein, beta-keto-acyl carrier protein sy	99.74
3ss6_A	394	Acetyl-COA acetyltransferase; structural genomics,	99.73
2iik_A	418	3-ketoacyl-COA thiolase, peroxisomal; fatty acid m	99.7
1e5m_A	416	KAS II, beta ketoacyl acyl carrier protein synthas	99.67
1ox0_A	430	Beta ketoacyl-acyl carrier protein synthase; trans	99.66
2gqd_A	437	3-oxoacyl-[acyl-carrier-protein] synthase 2; dupli	99.66
4ewg_A	412	Beta-ketoacyl synthase; ssgcid, structural genomic	99.64
1tqy_A	424	Beta-ketoacyl synthase/acyl transferase; alpha-bet	99.63
3svk_A	407	Acetyl-COA acetyltransferase; ssgcid, NIH, niaid,	99.62
1j3n_A	408	3-oxoacyl-(acyl-carrier protein) synthase II; cond	99.61
4ddo_A	451	3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgci	99.61
3goa_A	387	3-ketoacyl-COA thiolase; metabolism, fatty acid, p	99.61
3mqd_A	428	Beta-ketoacyl synthase; ssgcid, ALS collaborative	99.61
1ulq_A	401	Putative acetyl-COA acetyltransferase; structural	99.6
2gp6_A	434	3-oxoacyl-[acyl-carrier-protein] synthase 2; thiol	99.6
3kzu_A	428	3-oxoacyl-(acyl-carrier-protein) synthase II; seat	99.59
2iwz_A	438	3-oxoacyl-[acyl-carrier-protein] synthase; mitocho	99.59
2wge_A	416	3-oxoacyl-[acyl-carrier-protein] synthase 1; beta	99.57
3ho9_A	427	3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF,	99.57
2vu1_A	392	Acetyl-COA acetyltransferase; acyltransferase, PHB	99.55
1wl4_A	397	Acetyl-coenzyme A acetyltransferase 2; thiolase fo	99.55
2ix4_A	431	3-oxoacyl-[acyl-carrier-protein] synthase; beta-ke	99.54
1afw_A	393	3-ketoacetyl-COA thiolase; fatty acid metabolism;	99.54
2vba_A	406	3-oxoacyl-[acyl-carrier-protein] synthase 1; cytop	99.51
2wu9_A	442	3-ketoacyl-COA thiolase 2, peroxisomal; cysteine o	99.49
2qo3_A	915	Eryaii erythromycin polyketide synthase modules 3;	99.49
2ib8_A	395	Acetyl-COA acetyltransferase; thiolase fold, potas	99.48
3hhd_A	965	Fatty acid synthase; transferase, multienzyme, meg	99.45
2hg4_A	917	DEBS, 6-deoxyerythronolide B synthase; ketosynthas	99.45
1tqy_B	415	Actinorhodin polyketide putative beta-ketoacyl SY;	99.43
1wdk_C	390	3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame	99.39
4egv_A	520	Acetyl-COA acetyltransferase; NEW SUB-family, thio	98.97
3zen_D	3089	Fatty acid synthase; transferase, mycolic acid bio	98.87
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.59
2pff_A	1688	Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl	98.55
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	98.24
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	98.19
2x3e_A	331	3-oxoacyl-[acyl-carrier-protein] synthase 3; HED,	95.2
3lma_A	347	Stage V sporulation protein AD (spovad); NESG, str	95.18
1mzj_A	339	Beta-ketoacylsynthase III; beta-ketosynthase, arom	95.0
3s21_A	345	3-oxoacyl-[ACP] synthase III; non-decarboxylative	94.99
3il3_A	323	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	94.97
4dfe_A	333	3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgci	94.85
3gwa_A	365	3-oxoacyl-(acyl-carrier-protein) synthase III; str	94.8
1u6e_A	335	3-oxoacyl-[acyl-carrier-protein] synthase III; tra	94.77
1zow_A	313	3-oxoacyl-[acyl-carrier-protein] synthase III; FAB	94.76
3h78_A	359	PQS biosynthetic enzyme; PQSD, anthranilic acid, a	94.64
4efi_A	354	3-oxoacyl-(acyl-carrier protein) synthase; structu	94.5
1hnj_A	317	Beta-ketoacyl-acyl carrier protein synthase III; F	94.45
2ebd_A	309	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	94.41
1ub7_A	322	3-oxoacyl-[acyl-carrier protein] synthase; fatty a	94.06
4ewp_A	350	3-oxoacyl-[acyl-carrier-protein] synthase 3; trans	93.92
1ted_A	393	PKS18; thiolase fold, substrate binding tunnel, tr	93.53
2h84_A	374	Steely1; thiolase-fold, type III polyketide syntha	92.64
1u0m_A	382	Putative polyketide synthase; type III polyketide	92.46
3s3l_A	357	CERJ; acyltransferase, FABH homologue, KS III homo	92.26
3led_A	392	3-oxoacyl-acyl carrier protein synthase III; struc	89.74
4e1l_A	395	Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich,	89.67
3tsy_A	979	Fusion protein 4-coumarate--COA ligase 1, resvera	89.06
2vu1_A	392	Acetyl-COA acetyltransferase; acyltransferase, PHB	88.63
2d3m_A	406	Pentaketide chromone synthase; chalcone synthase,	87.72
1xpm_A	396	3-hydroxy-3-methylglutaryl COA synthase; HMG-COA s	87.21
4egv_A	520	Acetyl-COA acetyltransferase; NEW SUB-family, thio	87.02
3ss6_A	394	Acetyl-COA acetyltransferase; structural genomics,	86.75
3svk_A	407	Acetyl-COA acetyltransferase; ssgcid, NIH, niaid,	86.44
1ulq_A	401	Putative acetyl-COA acetyltransferase; structural	84.94
4dd5_A	396	Acetyl-COA acetyltransferase; structural genomics,	83.83
3ho9_A	427	3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF,	83.56
1wdk_C	390	3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrame	82.81
1wl4_A	397	Acetyl-coenzyme A acetyltransferase 2; thiolase fo	82.23
3goa_A	387	3-ketoacyl-COA thiolase; metabolism, fatty acid, p	82.02
3il6_A	321	3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH,	81.11
3kzu_A	428	3-oxoacyl-(acyl-carrier-protein) synthase II; seat	80.81
1j3n_A	408	3-oxoacyl-(acyl-carrier protein) synthase II; cond	80.56

>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}

Probab=100.00  E-value=5.8e-42  Score=304.86  Aligned_cols=230  Identities=14%  Similarity=0.101  Sum_probs=200.4

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      ..+|.|+|+|+|+++|+|+|+.+.++.+++||. ++||++||++.++|+..+|+++|+++||+++ |++++|||+||++|
T Consensus        13 ~srI~g~g~ylP~~~v~n~el~~~~~~~~e~I~~rtGI~~R~~a~~~e~~~~la~~Aa~~aL~~a-g~~~~dId~li~~t   91 (350)
T 4ewp_A           13 ASRIVAVGAYRPANLVPNEDLIGPIDSSDEWIRQRTGIVTRQRATAEETVPVMAVGAAREALERA-GLQGSDLDAVIVST   91 (350)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHTTTTTCCHHHHHHHHCCSEEECCCSSCCHHHHHHHHHHHHHHHT-TCCGGGCSEEEEEC
T ss_pred             CCEEEEEEEEcCCCeEcHHHHHHHhCCCHHHHHhccCceEEEEcCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEe
Confidence            468999999999999999999999999999998 8999999999999999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      ++|++..|+.+.+||++||++ ++++||++++|+|+++||.+|..++++|..  ++||||++|.+|..+++.+  +.+  
T Consensus        92 ~t~~~~~P~~a~~v~~~LGl~-~~~a~di~~~C~g~~~aL~~A~~~i~~g~~--~~~Lvv~~E~~s~~~d~~~--~~~--  164 (350)
T 4ewp_A           92 VTFPHATPSAAALVAHEIGAT-PAPAYDVSAACAGYCYGVAQADALVRSGTA--RHVLVVGVERLSDVVDPTD--RSI--  164 (350)
T ss_dssp             SCCSCSSSCHHHHHHHHTTCT-TSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTC--TTT--
T ss_pred             ccCCCCCCchHHHHHHHhCCC-CceEEEeecchhhHHHHHHHhhhhhhCCCc--cceeEeeeeeceecccccc--ccc--
Confidence            999999999999999999995 678999999999999999999999999955  9999999999999998877  333  


Q ss_pred             ccccccccceeEEEEecCC--CCeeEEeecccccccccccc------------ccCC---------CCC--C--Ccccch
Q psy2407         162 AFFEPSGGAGAVAMLISDK--PEIFQFDIGSNGYYSFEVMD------------TCRP---------IPD--S--EAGNAD  214 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~--~~i~~~~~~~~g~~~~~~~~------------~~~p---------~~~--~--~~~~g~  214 (245)
                         ..+|||||+|+++++.  ++++.+.+++||+++..+..            .++.         ...  .  -.|+|+
T Consensus       165 ---~~lfgDGA~A~vl~~~~~~~~~~~~~~sdg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  241 (350)
T 4ewp_A          165 ---SFLLGDGAGAVIVAASDEPGISPSVWGSDGERWSTISMTHSQLELRDAVEHARTTGDASAITGAEGMLWPTLRQDGP  241 (350)
T ss_dssp             ---GGGBCEEEEEEEEEEESSCCBCCCEEEECGGGTTSEEESSCHHHHHHHHHHHHHHSCCTTTTTCSSCSSCCEEECHH
T ss_pred             ---ccccccchheeeeecccCCCccceeeeecccccceeeecCCccccCcccccccccCCccccccccccccceeEehhH
Confidence               3579999999999864  46777788888887654321            0000         000  0  148999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         215 LSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      ..++..++.+.+++++++++.|+++.++.
T Consensus       242 ~v~~~a~~~~~~~i~~~L~~~gl~~~did  270 (350)
T 4ewp_A          242 SVFRWAVWSMAKVAREALDAAGVEPEDLA  270 (350)
T ss_dssp             HHHHHHHHTHHHHHHHHHHHHTCCGGGEE
T ss_pred             HHHHHHHHhhhHHHHHHHHhhcCChhHhc
Confidence            99998899999999999999999988764

>3v4n_A HMG-COA synthase; hydroxymethylglutaryl-COA synthase, nitrosylation, transfera inhibitor complex; HET: BTB; 1.60A {Enterococcus faecalis} PDB: 3v4x_A* 1x9e_A 1ysl_B* 1ysl_A* 2hdb_A*

Probab=100.00  E-value=4.5e-42  Score=309.53  Aligned_cols=226  Identities=33%  Similarity=0.517  Sum_probs=206.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++|+|+|+++++|+++++..+.+++|+. ++|+++|+++.++|+..+|+++|+++||+++ +  ++|||+||++
T Consensus         6 m~v~I~~~g~y~P~~~v~~~~l~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a-~--~~~Id~li~~   82 (388)
T 3v4n_A            6 MTIGIDKISFFVPPYYIDMTALAEARNVDPGKFHIGIGQDQMAVNPISQDIVTFAANAAEAILTKE-D--KEAIDMVIVG   82 (388)
T ss_dssp             CCEEEEEEEEECCSEEEEHHHHHHHTTSCTHHHHTTTCCCEEECCCTTCCHHHHHHHHHHTTCCHH-H--HHHEEEEEEE
T ss_pred             eeEEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHHhCceEEEECCCCCCHHHHHHHHHHHHHHhC-C--cccCCEEEEE
Confidence            7899999999999999999999999999999997 8999999999899999999999999999997 7  9999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+.+|++.||++++++++|++++|+|++.||..|..+|++|..  ++||||++|+++..+++.+      
T Consensus        83 t~t~~~~~ps~a~~v~~~LGl~~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~--~~vLVvg~e~~s~~~~~~~------  154 (388)
T 3v4n_A           83 TESSIDESKAAAVVLHRLMGIQPFARSFEIKEAXYGATAGLQLAKNHVALHPD--KKVLVVAADIAKYGLNSGG------  154 (388)
T ss_dssp             CSSCSBSSSCHHHHHHHHTTCCSSCEEEEEESGGGHHHHHHHHHHHHHHHCTT--CEEEEEEEEEECCCTTCTT------
T ss_pred             eccCCCcCccHHHHHHHHcCCCCCceEeehhhhhhHHHHHHHHHHHHHhcCCC--CEEEEEEehhhcccCCCCC------
Confidence            99999889999999999999975699999999999999999999999999955  9999999999998776543      


Q ss_pred             cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                          ..+|||||+|+||+++++++.+...+++.+. +..+||+|.... +.|+|++++++|++.+.+++++++++.|+++
T Consensus       155 ----~~lfGDGA~A~ll~~~~~il~~~~~~~~~~~-~~~df~~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~g~~~  229 (388)
T 3v4n_A          155 ----EPTQGAGAVAMLVSSEPRILALKEDNVMLTQ-DIYDFWRPTGHPYPMVDGPLSNETYIQSFAQVWDEHKKRTGLDF  229 (388)
T ss_dssp             ----GGGCEEEEEEEEEEESCSSEEECSCCEEEEC-CCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHCCCG
T ss_pred             ----CCccccceeEEEeecCCCceEEeccccccch-hccccccCCCCCCceeccHhHHHHHHHHHHHHHHHHHHHhCCCH
Confidence                4679999999999999888888877777654 567899998654 5799999999999999999999999999998


Q ss_pred             hhhc
Q psy2407         240 IVYN  243 (245)
Q Consensus       240 ~~~~  243 (245)
                      .++.
T Consensus       230 ~did  233 (388)
T 3v4n_A          230 ADYD  233 (388)
T ss_dssp             GGCS
T ss_pred             HHCC
Confidence            7653

>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}

Probab=100.00  E-value=3.4e-40  Score=290.88  Aligned_cols=231  Identities=18%  Similarity=0.147  Sum_probs=204.1

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+.+|.++|+|+|+++++|+++++.++.+++||. ++||++|+++.+++++.+|+.+|+++||+++ |++++|||.||++
T Consensus         8 ~~~~~~~~g~ylP~~~v~n~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~a-g~~~~~Id~vi~~   86 (323)
T 3il3_A            8 MNSRILSTGSYLPSHIRTNADLEKMVDTSDEWIVTRSGIRERRIAAEDETVATMGFEAAKNAIEAA-QINPQDIELIIVA   86 (323)
T ss_dssp             CEECCCEEEEECCSCEEEHHHHHTTSSCCHHHHHHHTCCCEEECCCTTCCHHHHHHHHHHHHHHHH-CCCGGGCCEEEEE
T ss_pred             ccCceeEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            6789999999999999999999999999999997 8999999999889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+.++++.||+ +++++++++++|+|++.||..|..+|++|.+  +++||+++|.+|..+++.+  |.+ 
T Consensus        87 t~~~~~~~p~~a~~v~~~lGl-~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d--~~~-  160 (323)
T 3il3_A           87 TTSHSHAYPSAACQVQGLLNI-DDAISFDLAAACTGFVYALSVADQFIRAGKV--KKALVIGSDLNSRKLDETD--RST-  160 (323)
T ss_dssp             CSCCSCSSSCHHHHHHHHTTC-SSCEEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGSCCTTC--TTT-
T ss_pred             eCCCCCCCccHHHHHHHHhCC-CCccEEEECCccHHHHHHHHHHHHHHHCCCC--CEEEEEEeeccccccCccc--ccc-
Confidence            999988899999999999999 4799999999999999999999999999966  9999999999999988776  322 


Q ss_pred             cccccccccceeEEEEecCC--CCeeEEeecccccccccccc--ccCCCCC--CCcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDK--PEIFQFDIGSNGYYSFEVMD--TCRPIPD--SEAGNADLSLLSYLDCCAQSFKEYKKR  234 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~--~~i~~~~~~~~g~~~~~~~~--~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~  234 (245)
                          ..+|||||+|+||++.  ++++.+.+.++|++.+.+..  ..+|...  ...|+|+..++.+++.+.+++++++++
T Consensus       161 ----~~lfGDGA~A~vl~~~~~~~i~~~~~~s~g~~~~~~~~~g~~~~~~~~~~~~~~g~~v~~~~~~~~~~~i~~~l~~  236 (323)
T 3il3_A          161 ----VVLFGDGAGAVILEASEQEGIISTHLHASADKNNALVLAQPERGIEKSGYIEMQGNETFKLAVRELSNVVEETLLA  236 (323)
T ss_dssp             ----TTTBCEEEEEEEEEEESSCCEEEEEEEECCCCSCSEECCCCCTTCSSCSCCEECHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             ----ccccccceEEEEEEEcCCCCeEEEEEEEcCCCcceEEECCCCCCCCCCCcEEEcCHHHHHHHHHHHHHHHHHHHHH
Confidence                4679999999999864  47888999999998765421  1111111  124899999999999999999999999


Q ss_pred             hcchhhhhc
Q psy2407         235 VQYKIIVYN  243 (245)
Q Consensus       235 ~~~~~~~~~  243 (245)
                      .|+++.++.
T Consensus       237 ~gl~~~did  245 (323)
T 3il3_A          237 NNLDKKDLD  245 (323)
T ss_dssp             TTCCTTTCC
T ss_pred             cCCCHHHCC
Confidence            999987653

>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A

Probab=100.00  E-value=5.4e-39  Score=287.55  Aligned_cols=232  Identities=14%  Similarity=0.158  Sum_probs=202.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc-CCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR-KLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~-~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      ++++|.++|+|+|+++++|+++.+.+ +.+.+||. ++||++||++.++++..+|+.+|+++||+++ |++++|||.||+
T Consensus        29 ~~v~I~gig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~a-g~~~~~Id~vi~  107 (365)
T 3gwa_A           29 PRAAIADIAGHLPEQVLTNDVLAQLYPDWPAEKILAKTGIRERRIAAPRETAADLAYEAARKLFAQG-AVGADQVDFVIL  107 (365)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHHHCTTCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHTT-SCCGGGCCEEEE
T ss_pred             ccEEEEEEEEeCCCcEEcHHHHHHHccCCCHHHHHHhcCccEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            57999999999999999999999988 77889987 8999999999899999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +|+++++..|+.+..++..||+++++++++++++|+|++.||..|..+|++|.+  ++|||+++|++|..+++.|  |.+
T Consensus       108 ~t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~~C~s~~~Al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d--r~~  183 (365)
T 3gwa_A          108 CTQAPDYVLPTSACMLQHRLGIPTHAGALDVNLGCSGYVYGLSLAKGLVETGAA--RCVLLLTADTYSKYLHPLD--KSV  183 (365)
T ss_dssp             EESSCSCSBSCHHHHHHHHTTCCTTSEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTC--HHH
T ss_pred             EeCCCCCCCCcHHHHHHHHcCCCCCceEEEecccChHHHHHHHHHHHHHHcCCC--CEEEEEEEchhhccCCccc--ccc
Confidence            999998889999999999999965899999999999999999999999999966  9999999999999988766  332


Q ss_pred             ccccccccccceeEEEEecCCC----CeeEEeecccccccccccc----ccCCCC----------------C-CCcccch
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMD----TCRPIP----------------D-SEAGNAD  214 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~----~~~p~~----------------~-~~~~~g~  214 (245)
                           ..+|||||+|+||++++    +++.+.+.++|++++.+..    ...|..                . ...|+|+
T Consensus       184 -----~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~~~~~~~gg~~~p~~~~~~~~~~~~~~~~~~~~~~~m~g~  258 (365)
T 3gwa_A          184 -----RTLFGDGASATAVIAEHGELERIGPFVFGTDGRGAPNLIVKAGLFREPKSADSAREHEDASGNVRTDEHLYMNGA  258 (365)
T ss_dssp             -----HTTBCCEEEEEEEEEECSSSCSEEEEEEEECGGGGGGEEECSSSSSSCCCTGGGCCEECTTSCEECTTSEEECHH
T ss_pred             -----cccccceeEEEEEEecCCCCCceEEEEEEEcCCCCCeEEecCCCcCCCCcccccccccccccccccccceEeccH
Confidence                 35799999999998643    4888899999987764321    111211                0 1247888


Q ss_pred             hhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         215 LSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      ..++...+.+.+++++++++.|+++.++.
T Consensus       259 ~v~~~~~~~~~~~i~~~L~~~gl~~~did  287 (365)
T 3gwa_A          259 EVMAFSLAEVPRAADRLLALAGEPRENID  287 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTCCGGGCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence            88888899999999999999999987653

>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}

Probab=100.00  E-value=2.7e-39  Score=288.39  Aligned_cols=232  Identities=12%  Similarity=0.088  Sum_probs=200.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCCh-HHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDT-VRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~-~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      ++++|.++|+|+|+++++|+++.+.++.++ +|+. ++||++||++.++++..+|+.+|+++||+++ |++++|||+||+
T Consensus        15 ~~v~I~~ig~~lP~~~v~n~~l~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~La~~Aa~~aL~~a-gi~~~~Id~vi~   93 (354)
T 4efi_A           15 QGARIAGVVSCVPSKQVDNDYFVERFDASAVRDVVKMIGVNRRRWADAQTSAGDLCRKAGEKLLAGL-GWQADSIDALIF   93 (354)
T ss_dssp             ESEEEEEEEEEECSCEEEGGGGTTTSCHHHHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEE
T ss_pred             cceEEEEEEEECCCcEEcHHHHHHHhCCCcHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            368999999999999999999999877654 7887 8999999999899999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +|+++++..|+.+..+++.||+++++++++++++|+|++.||..|..+|++|.+  ++|||+++|++|..+++.+  |.+
T Consensus        94 ~t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d--~~~  169 (354)
T 4efi_A           94 VSQTPNYRLPATAFVLQAELDLPASCLALDINLGCSGYPQALWLGMNLIQTGAA--KRVLLAVGDTISKMIDPTD--RST  169 (354)
T ss_dssp             ECSSCSCSSSCHHHHHHHHTTCCTTSEEEEECCCTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGCCTTC--HHH
T ss_pred             EeCCCCCCCCcHHHHHHHHcCcCCCccEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCccc--ccc
Confidence            999998899999999999999966899999999999999999999999999966  9999999999999988766  332


Q ss_pred             ccccccccccceeEEEEecCCC--CeeEEeecccccccccccc---ccCCCC-----------C-CCcccchhhHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMD---TCRPIP-----------D-SEAGNADLSLLSYLD  222 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~---~~~p~~-----------~-~~~~~g~~~~~~~~~  222 (245)
                           ..+|||||+|+||++++  +++.+.+.++|++.+.+..   .++|..           . ...|+|+..++..++
T Consensus       170 -----~~lfGDGA~A~vl~~~~~~~~~~~~~~s~g~~~~~~~~~~~g~~p~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~  244 (354)
T 4efi_A          170 -----SLLFGDAGTMTALETSNGDAAAHFIIGADGKGARNLIVPSGGFKPYDAAADERMAGKSPECLFMDGGEIFNFTLN  244 (354)
T ss_dssp             -----HTTBCCEEEEEEEEECCSCCEEEEEEEECGGGGGGEECCSSSSSCCCGGGCGGGTTCCTTSCEECHHHHHHHHHH
T ss_pred             -----ccccccceeEEEEeecCCCCceEEEEEEcCCCcceEEecCCCCCCCccccccccccccccceEEccHHHHHHHHH
Confidence                 35799999999998764  4678888899887764321   122211           1 124888888888899


Q ss_pred             HHHHHHHHHHHHhcchhhhhc
Q psy2407         223 CCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .+.+++++++++.|+++.++.
T Consensus       245 ~~~~~i~~~l~~~gl~~~did  265 (354)
T 4efi_A          245 AVPKLVSRTLDIAGRDKDSYD  265 (354)
T ss_dssp             HHHHHHHHHHHHHTCCGGGCS
T ss_pred             HHHHHHHHHHHHcCCCHHHCC
Confidence            999999999999999988653

>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*

Probab=100.00  E-value=8.1e-39  Score=285.77  Aligned_cols=233  Identities=14%  Similarity=0.110  Sum_probs=203.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++++|.++|+|+|+++++|+++.+.++.+++|+. ++||++||++.++++..+|+.+|+++||+++ |++++|||+||++
T Consensus        24 ~~~~I~~~g~~~P~~~v~~~~l~~~~~~~~~~i~~~tGi~~R~~a~~~~~~~~La~~Aa~~aL~~a-gl~~~dId~vi~~  102 (359)
T 3h78_A           24 GNPILAGLGFSLPKRQVSNHDLVGRINTSDEFIVERTGVRTRYHVEPEQAVSALMVPAARQAIEAA-GLLPEDIDLLLVN  102 (359)
T ss_dssp             CCCEEEEEEEECCSEEEEHHHHTTTSSCCHHHHHHHHCCCEEEECCTTCCTHHHHHHHHHHHHHHT-TCCGGGCCEEEEE
T ss_pred             CCcEEEEEEEECCCceEcHHHHHHHhCCCHHHHHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHhc-CCCHHHCCEEEEE
Confidence            4689999999999999999999999999999997 8999999999889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+..+++.||++ ++++++++++|+|++.||..|..+|++|.+  ++|||+++|.+|..+++.+..|.+ 
T Consensus       103 t~~~~~~~p~~a~~v~~~lGl~-~~~~~~v~~aC~s~~~Al~~A~~~i~sG~~--~~vLvvg~e~~S~~~~~~d~~~~t-  178 (359)
T 3h78_A          103 TLSPDHHDPSQACLIQPLLGLR-HIPVLDIRAQASGLLYGLQMARGQILAGLA--RHVLVVCGEVLSKRMDCSDRGRNL-  178 (359)
T ss_dssp             CSSCSSSBSCHHHHHHHHHTCC-SCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEECGGGCCCSTTTHHH-
T ss_pred             eCCCCCCCCcHHHHHHHHcCCC-CCcEEEECCHhHHHHHHHHHHHHHHHCCCc--CEEEEEEEchhcccCCcccccccc-
Confidence            9999888999999999999995 789999999999999999999999999966  999999999999998876621221 


Q ss_pred             cccccccccceeEEEEecCCC----CeeEEeeccccccccccccc-----cCCC-------C-C-CCcccchhhHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMDT-----CRPI-------P-D-SEAGNADLSLLSYLD  222 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~~-----~~p~-------~-~-~~~~~g~~~~~~~~~  222 (245)
                          ..+|||||+|+||++.+    +++.+.+.++|++++.+...     ..|.       . . ...|+|+..++.+++
T Consensus       179 ----~~lfGDGAaA~vl~~~~~~~~~i~~~~~~s~g~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~m~g~~v~~~~~~  254 (359)
T 3h78_A          179 ----SILLGDGAGAVVVSAGESLEDGLLDLRLGADGNYFDLLMTAAPGSASPTFLDENVLREGGGEFLMRGRPMFEHASQ  254 (359)
T ss_dssp             ----HTTBCEEEEEEEEECCSCSSSEEEEEEEEECGGGGGGEEBCCSSTTSSSTTCHHHHHTTTTSCEECHHHHHHHHHH
T ss_pred             ----cceecceeEEEEEEecCCCCCceEEEEEEEccCccceEEeCCCCCccCCccccccccccCCceEeccHHHHHHHHH
Confidence                35799999999998753    58888999999987654211     1111       1 1 124899999999999


Q ss_pred             HHHHHHHHHHHHhcchhhhhc
Q psy2407         223 CCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       223 ~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .+.+++++++++.|+++.++.
T Consensus       255 ~~~~~i~~~L~~~gl~~~did  275 (359)
T 3h78_A          255 TLVRIAGEMLAAHELTLDDID  275 (359)
T ss_dssp             HHHHHHHHHHHHTTCCGGGCS
T ss_pred             HHHHHHHHHHHHcCCCHHHCC
Confidence            999999999999999988764

>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}

Probab=100.00  E-value=1.8e-38  Score=280.84  Aligned_cols=232  Identities=16%  Similarity=0.127  Sum_probs=203.0

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHH-----cCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcC
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKY-----RKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIE   75 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~-----~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId   75 (245)
                      |+++|.++|+|+|+++++|+++.+.     .+.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |++++|||
T Consensus        10 m~v~I~g~g~~lP~~~v~~~~l~~~l~~~~~~~~~~~i~~rtgi~~r~~~~~~~~~~~la~~Aa~~al~~a-g~~~~~Id   88 (333)
T 4dfe_A           10 IYSRVLGTGSYLPPNRVTNQDLAKRLAEQGIETSDEWIVARTGIHARYFAEPDVTTSDLAFIASQRAIEAA-DIDPQSID   88 (333)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHHHHC---CCCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHH-TCCGGGCC
T ss_pred             cceEEEEEEEECCCcEEcHHHHHHHhccccCCCCHHHhHHhcCceEEEEcCCCCCHHHHHHHHHHHHHHHc-CCCHHHCC
Confidence            6799999999999999999999998     677788987 8999999998889999999999999999997 99999999


Q ss_pred             EEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccc
Q psy2407          76 LIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKN  155 (245)
Q Consensus        76 ~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~  155 (245)
                      .||++|+++++..|+.+..|++.||+++++++++++++|+|++.||.+|..+|++|.+  ++|||+++|.+|..+++.+ 
T Consensus        89 ~vi~~t~~~~~~~p~~a~~v~~~lgl~~~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d-  165 (333)
T 4dfe_A           89 LIIVATSTPDFVFPSTACLLQNKLGIRNHGAAFDVQAVCSGFAYAVATADSFIRSGQH--RTALVIGAETFSRILDFKD-  165 (333)
T ss_dssp             EEEEECSSCSSSBSCHHHHHHHHTTCCSCCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTC-
T ss_pred             EEEEEeCCCCCCCCcHHHHHHHHhCCCCCCcEEEeCcccHHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccccCccc-
Confidence            9999999998889999999999999976899999999999999999999999999966  9999999999999988776 


Q ss_pred             ccccccccccccccceeEEEEecCC--CCeeEEeeccccccccccccccCCC------CCCCcccchhhHHHHHHHHHHH
Q psy2407         156 ELTMEWAFFEPSGGAGAVAMLISDK--PEIFQFDIGSNGYYSFEVMDTCRPI------PDSEAGNADLSLLSYLDCCAQS  227 (245)
Q Consensus       156 ~~~~~~~~~~~~~GDGAaA~ll~~~--~~i~~~~~~~~g~~~~~~~~~~~p~------~~~~~~~g~~~~~~~~~~~~~~  227 (245)
                       +..     ..+|||||+|+||++.  ++++.+.+.++|++.+.+.....|.      .....|+|+..++.+.+.+.++
T Consensus       166 -~~~-----~~lfGDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  239 (333)
T 4dfe_A          166 -RTT-----CVLFGDGAGAVILQASDEPGVLASALHADGSHSNILCTPGNVNGGVVSGSAFLHMDGQAVFKLAVNVLEKV  239 (333)
T ss_dssp             -TTT-----TTTBCEEEEEEEEEEESSCSEEEEEEEECGGGGGGEEBCEEEETTEEEECCSCEECHHHHHHHHHHHHHHH
T ss_pred             -ccc-----eeeeccccEEEEEEEcCCCCeEEEEEEEccCCcCeEEECCCCCCcccccCcceeeccHHHHHHHHHHHHHH
Confidence             221     3679999999999864  4788888889998776543211110      1123599999999999999999


Q ss_pred             HHHHHHHhcchhhhhc
Q psy2407         228 FKEYKKRVQYKIIVYN  243 (245)
Q Consensus       228 ~~~~~~~~~~~~~~~~  243 (245)
                      +++++++.|+++.++.
T Consensus       240 i~~~l~~~gl~~~did  255 (333)
T 4dfe_A          240 AVEALEKANLSAEQID  255 (333)
T ss_dssp             HHHHHHHTTCCGGGCS
T ss_pred             HHHHHHHcCCCHHHCC
Confidence            9999999999987653

>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*

Probab=100.00  E-value=7.8e-38  Score=275.51  Aligned_cols=220  Identities=12%  Similarity=0.101  Sum_probs=188.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++++|.++|+|+|+++++|+++.+..+.+++|+. ++||++||++.+++ ..+|+.+|+++||+++ |++++|||+||++
T Consensus         3 ~~~~I~~~g~~lP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~a~~~e-~~~La~~Aa~~aL~~a-g~~~~~Id~li~~   80 (321)
T 3il6_A            3 NYARISCTSRYVPENCVTNHQLSEMMDTSAAWIHSRTGISERRIVTQEN-TSDLCHQVAKQLLEKS-GKQASEIDFILVA   80 (321)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHTTSCHHHHHHHHSCSEEECCSSCC-HHHHHHHHHHHHHHHH-TCCGGGCCEEEEE
T ss_pred             CcEEEEEEEEECCCcEEcHHHHHHHhCCChhhhhhhcCceEEEECCCCC-HHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5799999999999999999999999999999998 89999999988777 9999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |++|++..|+.+..+++.||++ ++++++++++|+|++.||..|..+|++|.+  +++||+++|.+|..+++++  |.+ 
T Consensus        81 t~~~~~~~p~~a~~v~~~lGl~-~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~d--r~~-  154 (321)
T 3il6_A           81 TVTPDFNMPSVACQVQGAIGAT-EAFAFDISAACSGFVYALSMAEKLVLSGRY--QTGLVIGGETFSKMLDWTD--RST-  154 (321)
T ss_dssp             CSSCSCSSSCHHHHHHHHTTCT-TCEEEEECCGGGHHHHHHHHHHHHHHTSSC--CCEEEEEEECGGGGSCTTC--TTT-
T ss_pred             eCCCCcCCCcHHHHHHHHcCCC-CceEEEeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEEccccccCCccc--ccc-
Confidence            9999899999999999999995 599999999999999999999999999966  9999999999999888876  322 


Q ss_pred             cccccccccceeEEEEecCCC--CeeEEeecccccccccccc-------ccCCCC----CCCcccchhhHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMD-------TCRPIP----DSEAGNADLSLLSYLDCCAQS  227 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~-------~~~p~~----~~~~~~g~~~~~~~~~~~~~~  227 (245)
                          ..+|||||+|+||++.+  +++.+.+.++|++++.+..       .|.+..    ....|+|+..++...+.+.++
T Consensus       155 ----~~lfGDGA~A~vl~~~~~~~i~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  230 (321)
T 3il6_A          155 ----AVLFGDGAAGVLIEAAETPHFLNEKLQADGQRWTALTSGYTINESPFYQGHKQASKTLQMEGRSIFDFAIKDVSQN  230 (321)
T ss_dssp             ----GGGBCCEEEEEEEEEESSCCEEEEEEEECGGGGGGEECCCCCCCSTTCCCCCCCCCSCEECHHHHHHHHHHHHHHH
T ss_pred             ----ceeeccccEEEEEEEcCCCCEEEEEEEEcCCCCCeEEeCCCCCCCCCCccccccccceeechHHHHHHHHHHHHHH
Confidence                35799999999998643  5888899999987764321       122111    112488887777777888777


Q ss_pred             HHHHHH
Q psy2407         228 FKEYKK  233 (245)
Q Consensus       228 ~~~~~~  233 (245)
                      ++++++
T Consensus       231 i~~~l~  236 (321)
T 3il6_A          231 ILSLVT  236 (321)
T ss_dssp             HHTTCC
T ss_pred             HHHHcC
Confidence            777655

>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}

Probab=100.00  E-value=2.1e-37  Score=279.48  Aligned_cols=229  Identities=15%  Similarity=0.121  Sum_probs=191.4

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHH------------------------cCCChHHHh-hccceeeeecCCCC------
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKY------------------------RKLDTVRFE-NLLMQQKSVSLPYE------   49 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~------------------------~~~~~~~~~-~~Gi~~r~~~~~~e------   49 (245)
                      |++++|.++|+|+|+++|+|+|+.+.                        .+.+.+||. ++||++||++.+++      
T Consensus        22 ~~~~~I~gig~~~P~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~I~~~tGI~~R~~a~~~~~~~~~~  101 (392)
T 3led_A           22 VRPAVIAATGLYTPPDSVSNAELVEAFNTYVANFNAANKARIEAGEIEPLQPSSSEFIEKASGIKSRYVVAKPGIVDPDV  101 (392)
T ss_dssp             CCCEEEEEEEEECCSEEEEHHHHHHHHHHHHHHHHHHTHHHHHTTSSCCCCCCCHHHHHHHHCCCEEEESCCGGGGCTTT
T ss_pred             cCceEEEEEEEeCCCceEcHHHHHHHHhhhhcccccccchhhhcccccccCCCcHHHHHHccCCceEEEecCcccccccc
Confidence            56899999999999999999999763                        234688997 99999999986532      


Q ss_pred             --------------CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          50 --------------DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        50 --------------~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                                    ++.+|+++|+++||+++ |++++|||+||++|+++++..|+.+..|++.||+  ++++||++++|+
T Consensus       102 ~~~~~~~r~~~~~~~~~~La~~Aa~~AL~~a-gi~~~dId~vi~~t~t~~~~~p~~a~~v~~~LGl--~~~~~dv~~aC~  178 (392)
T 3led_A          102 MRPIIPERSNDELSILAEMAVTAAEQAIERW-GKPRERIGAVLCACSNMQRAYPAMAIEVQNALGL--GGFAFDMNVACS  178 (392)
T ss_dssp             CSCCCCCCCTTSCCHHHHHHHHHHHHHHHHH-CSCGGGEEEEEEESSCCSCSBSCHHHHHHHHTTC--CSEEEEEECGGG
T ss_pred             cccccccchhcccccHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCCCCccHHHHHHHHHhCC--CCeEEEECCccH
Confidence                          36899999999999997 9999999999999999999999999999999999  378999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC------CeeEEeec
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP------EIFQFDIG  189 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~  189 (245)
                      |++.||.+|..+|++|.+  ++|||+++|.+|..+++.|  |.+     ..+|||||+|+||++.+      +++.+.+.
T Consensus       179 g~~~aL~~A~~~i~~g~~--~~vLvvg~E~~S~~~d~~d--r~t-----~~lFGDGA~A~vl~~~~~~~~~~~i~~~~~~  249 (392)
T 3led_A          179 SATFGLKTAADFVGGGSV--DAVLMVNPEICSGHLNFRD--RDS-----HFIFGDVATAAIVERADDAQGGWSILGTKLK  249 (392)
T ss_dssp             HHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGGCCTTC--TTT-----TTTBCEEEEEEEEEEGGGCCSSEEEEEEEEE
T ss_pred             HHHHHHHHHHHHHHCCCC--CEEEEEeehhcCCcCCcCc--ccC-----CcccccccEEEEEEecCCCCCCCeEEEEEEE
Confidence            999999999999999966  9999999999999998877  332     46899999999998643      47777777


Q ss_pred             ccccccccccc---c-cCCCC-------CCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         190 SNGYYSFEVMD---T-CRPIP-------DSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       190 ~~g~~~~~~~~---~-~~p~~-------~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      ++++.  .+..   + +++.+       ....|+|+..++.+++.+.+++++++++.|+++.++.
T Consensus       250 s~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~v~~~a~~~~~~~i~~~L~~~gl~~~dId  312 (392)
T 3led_A          250 TQFSN--NIRNNAGFLNRAWPEGRDKADKLFVQQGRKVFKEVVPLVSEMIIEHAREIGIDPHGLK  312 (392)
T ss_dssp             ECCCS--SEEBCCSGGGGGSGGGTTSGGGSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCS
T ss_pred             Ecccc--ccccCCCcccCCCccccccccceEEechHHHHHHHHHHHHHHHHHHHHHcCCCHHHCc
Confidence            76542  1110   0 11100       0124899999999999999999999999999988654

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*

Probab=100.00  E-value=8.8e-38  Score=282.48  Aligned_cols=225  Identities=34%  Similarity=0.541  Sum_probs=200.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++|+|+|+++++|+++.+..+.+++|+. ++||++|+++.++++..+|+++|+++||++   +++++||.||++
T Consensus         1 m~v~I~~ig~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~---~~~~~Id~li~~   77 (396)
T 1xpm_A            1 MAIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITD---EDKKKIGMVIVA   77 (396)
T ss_dssp             -CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCH---HHHHHEEEEEEE
T ss_pred             CceEEEEEEEeCCCeEecHHHHHHHhCCCHHHHhhhcCceEEEeCCCCCCHHHHHHHHHHHHHhc---CCHHHCCEEEEE
Confidence            5799999999999999999999999999999997 899999999988999999999999999987   478999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+..|+..||+++++++++++++|+|++.||..|..+|++|..  +++||+++|..+..+++.       
T Consensus        78 t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~sg~~Al~~A~~~I~sg~~--~~vLvvg~e~s~~~~~~~-------  148 (396)
T 1xpm_A           78 TESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPN--EKVLVIATDTARYGLNSG-------  148 (396)
T ss_dssp             CSSCSBSSSCHHHHHHHHTTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTT--CEEEEEEEEEECCCTTCS-------
T ss_pred             eCCCCCCCCCHHHHHHHHhCCCCCceEEEeccccHHHHHHHHHHHHHHHcCCC--CEEEEEeehhhccccCCC-------
Confidence            99998889999999999999965699999999999999999999999999965  999999999844433221       


Q ss_pred             cccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         161 WAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                         ...+|||||+|+||+++++++.+..+ +|++..+..++|+|.... +.|+|+.++++|++.+.+++++++++.|+++
T Consensus       149 ---~~~~~GdGA~A~vl~~~~~i~~~~~~-~g~~~~d~~~~~~p~~~~~~~~~G~~~~~~~~~~~~~~~~~~L~~agl~~  224 (396)
T 1xpm_A          149 ---GEPTQGAGAVAMVIAHNPSILALNED-AVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSL  224 (396)
T ss_dssp             ---SGGGCEEEEEEEEEEESCSSEEECSC-CEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCG
T ss_pred             ---CCcccccceEEEEeccCCceEEEEec-cccccceEEEeeccCCCCCeEEEcHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence               24689999999999988888888776 788887778899997643 4689999999999999999999999999988


Q ss_pred             hhh
Q psy2407         240 IVY  242 (245)
Q Consensus       240 ~~~  242 (245)
                      .++
T Consensus       225 ~di  227 (396)
T 1xpm_A          225 ADF  227 (396)
T ss_dssp             GGC
T ss_pred             HHC
Confidence            765

>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A

Probab=100.00  E-value=2e-37  Score=275.30  Aligned_cols=235  Identities=17%  Similarity=0.182  Sum_probs=192.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc-------CCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCC
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR-------KLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNS   73 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~-------~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~d   73 (245)
                      ++++|.++|+|+|+++++|+++.+.+       +.+++||. ++||++||++.++++..+|+.+|+++||+++ |++++|
T Consensus        11 ~~v~I~~~g~~lP~~~v~n~~l~~~~~~~~~~~~~~~~~i~~~tGi~~R~~~~~~~~~~~La~~Aa~~al~~a-g~~~~~   89 (345)
T 3s21_A           11 QNVSIAGLAHIDAPHTLTSKEINERLQPTYDRLGIKTDVLGDVAGIHARRLWDQDVQASDAATQAARKALIDA-NIGIEK   89 (345)
T ss_dssp             SSEEEEEEEEEECSEEEEHHHHHHHHHHHHHHHTCCCCHHHHTTCCSEEEECSSCCCHHHHHHHHHHHHHHHH-TCCGGG
T ss_pred             cceEEEEEEEeCCCcEEcHHHHHHHHhhcccccCCCHHHHHHhhCceeEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHH
Confidence            57999999999999999999998764       56788987 8999999999899999999999999999997 999999


Q ss_pred             cCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCc
Q psy2407          74 IELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTED  153 (245)
Q Consensus        74 Id~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~  153 (245)
                      ||.||++|+++++..|+.+..|++.||+++++++++++++|+|++.||..|..+|++|.+  ++|||+++|.+|..+++.
T Consensus        90 Id~vi~~t~~~~~~~p~~a~~v~~~lGl~~~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLvvg~e~~s~~~~~~  167 (345)
T 3s21_A           90 IGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVANACLAFINGMDIAARMLERGEI--DYALVVDGETANLVYEKT  167 (345)
T ss_dssp             CCEEEECCSCCSCSSSCHHHHHHHHHTCCTTCEEEECCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCHHHHHHH
T ss_pred             CCEEEEEeCCCCCCCChHHHHHHHHhCCCCCceEEeECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccchhhccc
Confidence            999999999998999999999999999966799999999999999999999999999966  999999999999876543


Q ss_pred             cc----cccc--c--cccccccccceeEEEEecCCC------CeeEEeeccccccccccccccCCCCCCCcccchhhHHH
Q psy2407         154 KN----ELTM--E--WAFFEPSGGAGAVAMLISDKP------EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLS  219 (245)
Q Consensus       154 ~~----~~~~--~--~~~~~~~~GDGAaA~ll~~~~------~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~  219 (245)
                      ..    ++..  +  ..+...+|||||+|+||++.+      ++++....+++++.+    .+++..+...|+|+..++.
T Consensus       168 ~~~~~~~~~~~~~f~~~~~~~~~GdGA~A~vl~~~~~~~~~~~i~~~~~~~~~~~~~----~~~~~~~~~~~~g~~v~~~  243 (345)
T 3s21_A          168 LERMTSPDVTEEEFRNELAALTLGCGAAAMVMARSELVPDAPRYKGGVTRSATEWNK----LCRGNLDRMVTDTRLLLIE  243 (345)
T ss_dssp             HHHHTCTTCCHHHHHHHHGGGGBCCEEEEEEEEEGGGSTTSCEEEEEEEEECGGGTT----C-----------CHHHHHH
T ss_pred             cccccCCccchhhhhhhccceeeccceeEEEEecCCCCCCCcceeeeccccCcchhh----hccccCcceEEcHHHHHHH
Confidence            10    0100  0  011246799999999998643      467777777766543    3444333345899999999


Q ss_pred             HHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         220 YLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      +++.+.+++++++++.|+++.++.
T Consensus       244 ~~~~~~~~i~~~l~~~gl~~~did  267 (345)
T 3s21_A          244 GIKLAQKTFVAAKQVLGWAVEELD  267 (345)
T ss_dssp             HHHHHHHHHHHHHHHHCCCGGGCS
T ss_pred             HHHHHHHHHHHHHHHcCCCHHHCC
Confidence            999999999999999999987653

>2f82_A HMG-COA synthase; HMGS1, transferase; 2.10A {Brassica juncea} PDB: 2f9a_A* 2fa0_A* 2fa3_A*

Probab=100.00  E-value=3e-37  Score=283.15  Aligned_cols=228  Identities=26%  Similarity=0.336  Sum_probs=200.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++|+|+++++..+.+++|+. ++|+++|+++.++++..+|+++|+++||+++ |+++++||+||++
T Consensus         2 ~~v~I~~ig~y~P~~~v~~~~l~~~~g~~~~~~~~g~G~~~~~~~~~~e~~~~La~~Aa~~aL~~a-gi~~~~Id~li~~   80 (450)
T 2f82_A            2 KNVGILAMDIYFPPTCVQQEALEAHDGASKGKYTIGLGQDCLAFCTELEDVISMSFNAVTSLLEKY-KIDPKQIGRLEVG   80 (450)
T ss_dssp             CSCEEEEEEEECCSEEEEHHHHHHHTTCCTTTTTTTSCCCEEECCCTTCCHHHHHHHHHHHHHHHT-TCCGGGEEEEEEE
T ss_pred             CceEEEEEEEECCCeeccHHHHHHHhCCCHHHhhhhhCceeeeeCCCCCCHHHHHHHHHHHHHHHc-CcCHHHCCEEEEE
Confidence            5799999999999999999999999999999996 8899999988889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCC--CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELT  158 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~  158 (245)
                      |+++++..|+.+..|++.||+  ++++++++++++|+|++.||.+|..+|++|.+++++||||++|.++.    .+  +.
T Consensus        81 t~t~~~~~p~~a~~v~~~lgl~g~~~~~~~~v~~aC~gg~~AL~~A~~~I~sg~~~~~~vLVvg~e~~~~----~~--~~  154 (450)
T 2f82_A           81 SETVIDKSKSIKTFLMQLFEKCGNTDVEGVDSTNACYGGTAALLNCVNWVESNSWDGRYGLVICTDSAVY----AE--GP  154 (450)
T ss_dssp             CCCCSCSSSCHHHHHTHHHHTTTCCCCBCCEECSGGGHHHHHHHHHHHHHHSTTCCSCEEEEEEEEEECC----SS--ST
T ss_pred             ecCCCCCCCcHHHHHHHHhCCcCCCCceEEEhhhhhHHHHHHHHHHHHHHHcCCCcCCeEEEEEeeeccc----cC--CC
Confidence            999988899999999999998  55789999999999999999999999999953348999999999862    22  11


Q ss_pred             cccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHH---
Q psy2407         159 MEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKK---  233 (245)
Q Consensus       159 ~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~---  233 (245)
                           ..++|||||+|+||++++.+ .+...++|++...++++|+|....  +.|+|++++.+|++.+.++++++++   
T Consensus       155 -----~~~~fGDGA~A~ll~~~~~~-~~~~~~~g~~~~~~~d~~~p~~~~~~~~~~G~~~~~~~~~~l~~~~~~~l~~~~  228 (450)
T 2f82_A          155 -----ARPTGGAAAIAMLIGPDAPI-VFESKLRGSHMAHVYDFYKPNLASEYPVVDGKLSQTCYLMALDSCYKHLCNKFE  228 (450)
T ss_dssp             -----TGGGCEEEEEEEEEESSCSE-EEEEEEEEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----CCcccccceEEEEeccCCce-EEEeccceeehhhccceeeeCCCCCceeecCccHHHHHHHHHHHHHHHHHHHhh
Confidence                 25689999999999987764 566666788888888899997543  5799999999999999999999987   


Q ss_pred             ---Hhcchhhhh
Q psy2407         234 ---RVQYKIIVY  242 (245)
Q Consensus       234 ---~~~~~~~~~  242 (245)
                         +.|+++.++
T Consensus       229 ~~~~agl~~~di  240 (450)
T 2f82_A          229 KLEGKEFSINDA  240 (450)
T ss_dssp             HHHSSCCCGGGC
T ss_pred             hccccCCChhhc
Confidence               667777654

>2p8u_A Hydroxymethylglutaryl-COA synthase, cytoplasmic; hydromethylglutaryl COA, mevalonate pathway, structural GENO structural genomics consortium, SGC; HET: COA; 2.00A {Homo sapiens}

Probab=100.00  E-value=2.1e-37  Score=285.73  Aligned_cols=221  Identities=29%  Similarity=0.388  Sum_probs=189.6

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      ||+++|.++++|+|+++|+++++++..+.+++|+. ++|+++|+++.++++..+|+++|+++||+++ |++++|||+||+
T Consensus        22 ~~~vgI~aig~y~P~~~v~~~el~~~~g~~~~~~~~~~Gi~~r~~~~~~e~~~~La~~Aa~~aL~~a-gi~~~dId~li~  100 (478)
T 2p8u_A           22 SMDVGIVALEIYFPSQYVDQAELEKYDGVDAGKYTIGLGQAKMGFCTDREDINSLCMTVVQNLMERN-NLSYDCIGRLEV  100 (478)
T ss_dssp             HHCCEEEEEEEECCSEEEEHHHHHHHHTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHT-TCCGGGEEEEEE
T ss_pred             CCceEEEEEEEECCCeEecHHHHHHHhCCChhHhecccCceEEEeCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            36799999999999999999999999999999886 8999999998889999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHH---cCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccc
Q psy2407          80 CSESGIDFGKSMSTYIHHY---LGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNE  156 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~---LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~  156 (245)
                      +|+++++..|+.+.+|++.   ||+ ++++++|++++|+|++.||.+|..+|++|.++.++||||++|..    ++.+  
T Consensus       101 ~T~t~~~~~ps~a~~v~~~L~~lG~-~~~~~~dv~~aC~gg~~AL~~A~~~i~sg~~~~~~aLVV~~Eia----~~~~--  173 (478)
T 2p8u_A          101 GTETIIDKSKSVKTNLMQLFEESGN-TDIEGIDTTNACYGGTAAVFNAVNWIESSSWDGRYALVVAGDIA----VYAT--  173 (478)
T ss_dssp             ECSCCSCSSSCHHHHHGGGTTTTTC-CCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE----CCCS--
T ss_pred             EccCCcccCccHHHHHHHHHhhcCC-CCceEEEEcchhHHHHHHHHHHHHHHHcCCccCCEEEEEEeeee----cccC--
Confidence            9999988899999999954   555 57999999999999999999999999999611499999999964    2333  


Q ss_pred             cccccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407         157 LTMEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKR  234 (245)
Q Consensus       157 ~~~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~  234 (245)
                      +.     ..++|||||+|+||++++.+ .+....+|++..+..++|+|.+..  +.|+|++++.+|++++.++++.+.++
T Consensus       174 ~~-----~~~~fGdGA~A~Ll~~~~~~-~l~~~~~gs~~~~~~d~~~p~~~~~~~~~dG~~s~~~y~~a~~~~~~~~~~~  247 (478)
T 2p8u_A          174 GN-----ARPTGGVGAVALLIGPNAPL-IFERGLRGTHMQHAYDFYKPDMLSEYPIVDGKLSIQCYLSALDRCYSVYCKK  247 (478)
T ss_dssp             ST-----TGGGCEEEEEEEEEESSCSE-EECTTCCEEEECCCCSEECCCTTCSSCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CC-----CCCcccceeEEEEEecCCCc-eEeeccceecccchhheeeecCCCcceEEcCcchHHHHHHHHHHHHHHHHHH
Confidence            11     25689999999999987653 233333678777788999998654  57999999999999999888877664


Q ss_pred             h
Q psy2407         235 V  235 (245)
Q Consensus       235 ~  235 (245)
                      .
T Consensus       248 l  248 (478)
T 2p8u_A          248 I  248 (478)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2wya_A Hydroxymethylglutaryl-COA synthase, mitochondrial; steroid biosynthesis, cholesterol biosynthesis, mitochondrion, phosphoprotein; HET: HMG; 1.70A {Homo sapiens}

Probab=100.00  E-value=1.6e-37  Score=285.77  Aligned_cols=220  Identities=27%  Similarity=0.384  Sum_probs=187.3

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      ++|+|.++|.|+|+++|+|+|+++..+.+++||. ++||++|+++.++|++.+||++|+++||+++ |++|+|||+||++
T Consensus         4 ~~VgI~~~g~y~P~~~v~~~~l~~~~~~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~a-~i~~~~Id~ii~a   82 (460)
T 2wya_A            4 KDVGILALEVYFPAQYVDQTDLEKYNNVEAGKYTVGLGQTRMGFCSVQEDINSLCLTVVQRLMERI-QLPWDSVGRLEVG   82 (460)
T ss_dssp             SSCEEEEEEEECCSEEEEHHHHHHHTTCCTTCCCCCCCCCEEECCCTTCCHHHHHHHHHHHHHHHH-TCCGGGEEEEEEE
T ss_pred             CceEEEEEEEECCCeEEcHHHHHHHhCCCHHHHHHhhCcEEEEECCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5799999999999999999999999999999998 8999999999999999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCC--CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGL--NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELT  158 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl--~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~  158 (245)
                      |+||++..|+++..|++.||+  .+++.+||++++|+||++||.+|..+|++|.++...++++.+|..    ++.+  +.
T Consensus        83 T~t~~~~~ps~a~~v~~~l~~~g~~~~~a~D~~~aC~g~~~al~~A~~~i~~g~~~~~lvvv~~s~~~----~~~d--~~  156 (460)
T 2wya_A           83 TETIIDKSKAVKTVLMELFQDSGNTDIEGIDTTNACYGGTASLFNAANWMESSSWDGRYAMVVCGDIA----VYPS--GN  156 (460)
T ss_dssp             CSCCSCSSSCHHHHHGGGTGGGTCCCCBCCEEESGGGHHHHHHHHHHHHHTSTTCCSCEEEEEEEEEE----CCCS--ST
T ss_pred             eCCCCCCCCchHHHHHHHHhccCCCCeeEechhhhhhhHHHHHHHHHHHHHhccccceEEEEEecccc----cccc--cc
Confidence            999999999999999999975  256889999999999999999999999999662233444444432    3333  22


Q ss_pred             cccccccccccceeEEEEecCCCCeeEEeeccccccccccccccCCCCCC--CcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407         159 MEWAFFEPSGGAGAVAMLISDKPEIFQFDIGSNGYYSFEVMDTCRPIPDS--EAGNADLSLLSYLDCCAQSFKEYKKR  234 (245)
Q Consensus       159 ~~~~~~~~~~GDGAaA~ll~~~~~i~~~~~~~~g~~~~~~~~~~~p~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~  234 (245)
                           ...+|||||+|+++++++.+. +.....+.+.....|||+|....  +.++|+++..+|.+...++|+.+.++
T Consensus       157 -----~~~~~GdGA~A~l~~~~~~~~-~~~~~~~~~~~~~~df~~p~~~s~~~~~dg~~s~~~~~~~g~~v~~~~~~~  228 (460)
T 2wya_A          157 -----ARPTGGAGAVAMLIGPKAPLA-LERGLRGTHMENVYDFYKPNLASEYPIVDGKLSIQCYLRALDRCYTSYRKK  228 (460)
T ss_dssp             -----TGGGCEEEEEEEEEESSCSEE-ECTTCCEEEECCCCSEECCCTTCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -----ccccCcchHHhhhcccCCcce-eecccccccccchhhhhccCCCCCCcccCCccchHHHHHhhHHHHHHHHHH
Confidence                 246799999999999987653 44455677777788999998764  56999999999988888888887655

>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*

Probab=100.00  E-value=1.9e-34  Score=252.77  Aligned_cols=229  Identities=18%  Similarity=0.169  Sum_probs=197.0

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++++|+++.+..+.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |+++++||.|+++
T Consensus         1 ~~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~l~~~a~~~al~~a-g~~~~~id~vi~g   79 (317)
T 1hnj_A            1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMA-GIEKDQIGLIVVA   79 (317)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEE
T ss_pred             CCcEEEEEEEeCCCceecHHHHHHHhCCCHHHHHHHhCceEEEecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            4789999999999999999999998888889987 8999999998889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      ++++++..|+.+.+++..||++ +.++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  |.. 
T Consensus        80 ~~~~~~~~~~~a~~v~~~lgl~-~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d--~~~-  153 (317)
T 1hnj_A           80 TTSATHAFPSAACQIQSMLGIK-GCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTD--RGT-  153 (317)
T ss_dssp             CSCCSCSSSCHHHHHHHHHTCC-SSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTC--HHH-
T ss_pred             cCCCCCCCCcHHHHHHHHhCCC-CCeEEeeCcccHHHHHHHHHHHHHHHCCCC--CEEEEEEechhcccCCchh--ccc-
Confidence            9999888899999999999995 579999999999999999999999999966  9999999999988776654  221 


Q ss_pred             cccccccccceeEEEEecCC--CCeeEEeeccccccccccccccCCC------CCCCcccchhhHHHHHHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDK--PEIFQFDIGSNGYYSFEVMDTCRPI------PDSEAGNADLSLLSYLDCCAQSFKEYK  232 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~--~~i~~~~~~~~g~~~~~~~~~~~p~------~~~~~~~g~~~~~~~~~~~~~~~~~~~  232 (245)
                          ..+|||||+|+||++.  .+++...+.++|.+.+.+.... |.      .....|+|+..++.+.+.+.+++++++
T Consensus       154 ----~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~aL  228 (317)
T 1hnj_A          154 ----IIIFGDGAGAAVLAASEEPGIISTHLHADGSYGELLTLPN-ADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETL  228 (317)
T ss_dssp             ----HTTBCCEEEEEEEEEESSCSEEEEEEEECGGGGGGEECCC-CCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----ceeeccccEEEEEEecCCCceeeEEEEEcCCCCCeEEECC-CCCCCCCCCceEEecCHHHHHHHHHHHHHHHHHHH
Confidence                3579999999999864  3677777777887655432111 10      011348899999999999999999999


Q ss_pred             HHhcchhhhh
Q psy2407         233 KRVQYKIIVY  242 (245)
Q Consensus       233 ~~~~~~~~~~  242 (245)
                      ++.|+++.++
T Consensus       229 ~~agl~~~di  238 (317)
T 1hnj_A          229 AANNLDRSQL  238 (317)
T ss_dssp             HHTTCCGGGC
T ss_pred             HHcCCCHHHC
Confidence            9999998865

>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.8e-34  Score=254.77  Aligned_cols=228  Identities=14%  Similarity=0.147  Sum_probs=194.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++|+|+|+++++|+++.+.++.+.+|+. ++||++||++.+ ++..+|+.+|+++||+++ |+  ++||.||++
T Consensus         4 m~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~-~~~~~la~~Aa~~al~~a-g~--~~id~vi~~   79 (331)
T 2x3e_A            4 RAAVVCGLGSYLPEAVLSNDMLAAELDTSDAWISSRTGVRQRHIAGD-LGSGDLALRAASAALASA-GL--ERVDAVVLA   79 (331)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHTTCCHHHHHHHHCCCEEECCTT-CCHHHHHHHHHHHHHHHH-TC--SCCSEEEEE
T ss_pred             ceeEEEEEEEECCCcEecHHHHHHHhCCCHHHHHHhhCceEEEecCC-CCHHHHHHHHHHHHHHhC-Cc--ccCCEEEEE
Confidence            7899999999999999999999999998999997 899999999755 899999999999999997 99  899999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |+++++..|+.+..++..||++ ++++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +.. 
T Consensus        80 t~~~~~~~p~~a~~v~~~lgl~-~~~~~~v~~aCas~~~Al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d--~~~-  153 (331)
T 2x3e_A           80 TSTGDFCCPATAPRVAARLGLV-GALAFDLSAAATGFVYGLASVGSLISAGLA--DSALLVGVDTFSHTLDPAD--RST-  153 (331)
T ss_dssp             CSSCSEEESCSHHHHHHHTTCT-TSEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGGSCTTC--HHH-
T ss_pred             eCCCCCCCChHHHHHHHHhCCC-CCcEEEEcCcChHHHHHHHHHHHHHHcCCC--CEEEEEEeeccccCCCccc--ccc-
Confidence            9998887899999999999995 589999999999999999999999999966  9999999999998877655  221 


Q ss_pred             cccccccccceeEEEEecCC-----CCeeEEeeccccccccccccccC----C----CCCCCcccchhhHHHHHHHHHHH
Q psy2407         161 WAFFEPSGGAGAVAMLISDK-----PEIFQFDIGSNGYYSFEVMDTCR----P----IPDSEAGNADLSLLSYLDCCAQS  227 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~-----~~i~~~~~~~~g~~~~~~~~~~~----p----~~~~~~~~g~~~~~~~~~~~~~~  227 (245)
                          ..+|||||+|+||++.     .+++...+.++|++.+.+...-.    |    ......|+|+..++.+.+.+.++
T Consensus       154 ----~~~~GdGA~A~vL~~~~~a~~~~i~~~~~~~dg~~~~~~~~p~~~~~~p~~~~~~~~~~~~g~~v~~~~~~~~~~~  229 (331)
T 2x3e_A          154 ----RALFGDGAGAVVLRAGDAEEEGALLAFDLGSDGHQFDLLMTPAVSRAERSSGQASNYFRMDGKAVFGQAVTQMSDS  229 (331)
T ss_dssp             ----HHHBCCEEEEEEEEEECTTSTTBEEEEEEEECGGGTTSEEEECCCHHHHHHTCCCCCCEECHHHHHHHHHHHHHHH
T ss_pred             ----ceeeccccEEEEEEecCCCCCCceEEEEEEEcCCCCCeEEecCCCCCCCCccCcCceEEecCHHHHHHHHHHHHHH
Confidence                3579999999999753     36777777788876654321000    1    11123589999999999999999


Q ss_pred             HHHHHHHhcchhhhhc
Q psy2407         228 FKEYKKRVQYKIIVYN  243 (245)
Q Consensus       228 ~~~~~~~~~~~~~~~~  243 (245)
                      +++++++.|+++.++.
T Consensus       230 i~~aL~~agl~~~did  245 (331)
T 2x3e_A          230 VRRVLDRVGWQASDLH  245 (331)
T ss_dssp             HHHHHHHHTCCGGGCS
T ss_pred             HHHHHHHcCCCHHHCC
Confidence            9999999999988653

>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*

Probab=100.00  E-value=2.5e-34  Score=256.62  Aligned_cols=227  Identities=15%  Similarity=0.091  Sum_probs=180.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHhhccceeeeecCCCC--CHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYE--DPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~~~Gi~~r~~~~~~e--~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      ++++|.++|+|+|+++++|+++..... +++..+++||++||++.++|  ++.+|+.+|+++||+++ |++++|||+||+
T Consensus         4 ~~v~I~g~g~ylP~~~~~~~~~~~~~~-~~~~~~~tGi~~r~~a~~~e~~~~~~La~~Aa~~aL~~a-g~~~~dId~vi~   81 (357)
T 3s3l_A            4 ENLFVSGVAAWLPPLSTAQDAVMAGLL-DPARSKLRGIESVTVASDAEEDAPPRMAARAARAALGRG-DVDPADVSLVLH   81 (357)
T ss_dssp             SSCEEEEEEEECCCEEEHHHHHHTTSS-CHHHHHHHCCCEEECCCSSGGGSHHHHHHHHHHHHHHHT-TCCGGGEEEEEE
T ss_pred             CceEEEEEEEECCCCCCHHHHHHhcCC-cHHHHHHcCceEEEecCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            579999999999998877777654322 23334589999999987666  99999999999999997 999999999999


Q ss_pred             Eec---cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCC--eEEEEEeccccc-ccc-C
Q psy2407          80 CSE---SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGA--KALVIATDISRF-FVT-E  152 (245)
Q Consensus        80 ~t~---~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~--~aLVv~~e~~s~-~~~-~  152 (245)
                      +|+   ++++  ++++..+++.||+ +++++|+++++|+|++.||.+|..+|++|.+  +  +||||++|++|. .++ +
T Consensus        82 ~t~~~~~~d~--~~~a~~v~~~lG~-~~~~~~~v~~aC~~~~~al~~A~~~i~sg~~--~~~~vLvvg~e~~s~~~~~~~  156 (357)
T 3s3l_A           82 SSLWFQGIDL--WPAASYVAHEAVG-RHVPAFGLAQRCNGGMGAIELAGAYLGSGIG--AGHAALLTTGDRFAGPRIDRW  156 (357)
T ss_dssp             ECSSCCSSSS--SCHHHHHHHHHTC-SSSCEEEEECGGGHHHHHHHHHHHHHHTTSS--SSSEEEEEEEECCCTTTCCTT
T ss_pred             EeccCCCccc--ccHHHHHHHHhCC-CCCcEEEEcCccHHHHHHHHHHHHHHHcCCC--CCCEEEEEEEecccccccccc
Confidence            998   4543  3679999999999 5899999999999999999999999999966  8  999999999994 553 3


Q ss_pred             cccccccccccccccccceeEEEEecCCC---CeeEEeecccccccccccc---ccCCCCC---CCcccchhhHH-----
Q psy2407         153 DKNELTMEWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD---TCRPIPD---SEAGNADLSLL-----  218 (245)
Q Consensus       153 ~~~~~~~~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~---~~~p~~~---~~~~~g~~~~~-----  218 (245)
                      ++  +      ...+|||||+|+||++.+   +++.+.+.++|++.+.+..   +..|...   ...|+|+..+.     
T Consensus       157 ~~--~------~~~lfGDGA~A~vl~~~~~~~~i~~~~~~s~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  228 (357)
T 3s3l_A          157 NS--V------DVTMYGDGAAALVLSTRDGFARVLSTATGVDNSLEILARGDEPFAPHPVEPSPVADLGTRTVRGAELAD  228 (357)
T ss_dssp             TS--S------SSCCBCCEEEEEEEESSCCSEEEEEEEEEECGGGGGGGTTTCCCCSSCCSSCCCCCHHHHHHHHHHHHC
T ss_pred             cc--c------CCcccccccEEEEEecCCCCCeEEEEEEEEccChhhhcccCCCCCCCccCcCCccccccchhhhhcccc
Confidence            33  1      146899999999999764   5888899999986543211   1111111   12366663333     


Q ss_pred             ------HHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         219 ------SYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       219 ------~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                            .+++.+.+++++++++.|+++.++.
T Consensus       229 ~~~~~~~~~~~~~~~i~~~L~~~gl~~~did  259 (357)
T 3s3l_A          229 LPDLTHRYIDLLVAAKTQALEDAGTAIEDIA  259 (357)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHTTCCGGGCS
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHcCCCHHHCC
Confidence                  6789999999999999999988653

>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2

Probab=100.00  E-value=1.9e-34  Score=255.40  Aligned_cols=230  Identities=16%  Similarity=0.129  Sum_probs=197.5

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      |++++|.++++|+|+++++|+++.+.++.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |+++++||.||+
T Consensus         9 ~~~~~I~gig~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~la~~Aa~~al~~a-g~~~~~id~vi~   87 (339)
T 1mzj_A            9 RRFSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHA-GVDPAEIDLVVV   87 (339)
T ss_dssp             CCEEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEE
T ss_pred             cCceEEEEEEEeCCCccccHHHHHHHhCCCHHHHHHhcCceEEEEeCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            56799999999999999999999998888899987 8999999998889999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +|+++++..|+.+..++..||++ +.++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +..
T Consensus        88 gt~~~~~~~p~~a~~v~~~lgl~-~~~~~~v~~aCas~~~Al~~A~~~i~~G~~--~~vLv~g~e~~s~~~~~~d--~~~  162 (339)
T 1mzj_A           88 STMTNFVHTPPLSVAIAHELGAD-NAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLAD--RSL  162 (339)
T ss_dssp             ECSCCCCCSSCHHHHHHHHHTCT-TCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSC--TTT
T ss_pred             EecCCCCCCChHHHHHHHHhCCC-CccEEEccccchHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCccc--ccc
Confidence            99999888899999999999995 589999999999999999999999999966  9999999999998776654  211


Q ss_pred             ccccccccccceeEEEEecCC--CCeeEEeeccccccccccccc--cCCC--------CCCCcccchhhHHHHHHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDK--PEIFQFDIGSNGYYSFEVMDT--CRPI--------PDSEAGNADLSLLSYLDCCAQS  227 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~--~~i~~~~~~~~g~~~~~~~~~--~~p~--------~~~~~~~g~~~~~~~~~~~~~~  227 (245)
                           ..+|||||+|+||++.  .+++...+.++|++.+.+...  | |.        .....|+|+..++.+.+.+.++
T Consensus       163 -----~~~~GdGA~A~vL~~~~~~~i~~~~~~~~g~~~~~~~~~g~~-p~~~~~~~~~~~~~~~~g~~v~~~~~~~~~~~  236 (339)
T 1mzj_A          163 -----SFLFGDGAGAAVVGPSDVPGIGPVVRGIDGTGLGSLHMSSSW-DQYVEDPSVGRPALVMDGKRVFRWAVADVVPA  236 (339)
T ss_dssp             -----TTTBCEEEEEEEEEEESSCCBCCCEEEECGGGGGGEEESCCH-HHHTTCSSSCSCCEEECHHHHHHHHHHHHHHH
T ss_pred             -----ceEeccCceEEEEEecCCCCeEEEEEEEcCCCCCeEEecCCC-CCcccccccccceEEeeCHHHHHHHHHHHHHH
Confidence                 4589999999999864  366666667778766543211  1 11        1112588999999999999999


Q ss_pred             HHHHHHHhcchhhhh
Q psy2407         228 FKEYKKRVQYKIIVY  242 (245)
Q Consensus       228 ~~~~~~~~~~~~~~~  242 (245)
                      +++++++.|+++.++
T Consensus       237 i~~aL~~agl~~~di  251 (339)
T 1mzj_A          237 AREALEVAGLTVGDL  251 (339)
T ss_dssp             HHHHHHTTTCCGGGC
T ss_pred             HHHHHHHcCCCHHHC
Confidence            999999999998765

>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}

Probab=100.00  E-value=9.9e-34  Score=247.16  Aligned_cols=226  Identities=15%  Similarity=0.110  Sum_probs=195.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++++++++.+..+.+++|+. ++||++|+++.+ ++..+|+.+|+++||+++ |+++++||.|+++
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~-~~~~~l~~~a~~~al~~a-g~~~~~id~v~~~   78 (309)
T 2ebd_A            1 MGTKIIGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKE-ETITYMATQAAKEALREA-NLSPEELDLIILA   78 (309)
T ss_dssp             CCEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECSS-CCHHHHHHHHHHHHHHHH-TCCGGGCSEEEEE
T ss_pred             CceEEEEEEEECCCceEcHHHHHHHcCCCHHHHHHHhCceeeeecCC-CCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5789999999999999999999998888889987 899999999765 899999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      ++++++..|+.+..++..||++ .+++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +.  
T Consensus        79 ~~~~~~~~~~~a~~v~~~lgl~-~~~~~~v~~~C~s~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~~--~~--  151 (309)
T 2ebd_A           79 TLTPQKRFPSTACLVQAQLKAK-GVYAFDISAACSGFIYALDIADSFIKSGKA--KNVLVIGAEKLSEAVDWED--RS--  151 (309)
T ss_dssp             CSSCSSSSSCHHHHHHHHHTCT-TCEEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEGGGTCCTTC--TT--
T ss_pred             cCCCCCCCCcHHHHHHHHhCCC-CceEEecCccchHHHHHHHHHHHHHHCCCC--CEEEEEEecccccccCccc--hh--
Confidence            9998888899999999999995 579999999999999999999999999976  9999999999998776654  21  


Q ss_pred             cccccccccceeEEEEecCCC---CeeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcc
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQY  237 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  237 (245)
                         ...+|||||+|+||++.+   +++...+.++|.+.+.+   ..|..+...++|+..++.+.+.+.+++++++++.|+
T Consensus       152 ---~~~~~gdGaaA~vL~~~~~~~~i~~~~~~~~g~~~~~~---~~p~~~~~~~~g~~~~~~~~~~~~~~i~~al~~agl  225 (309)
T 2ebd_A          152 ---TCVLFGDGAGAVVVTRSEDKSDILATRMYAEGSLEELL---HADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGV  225 (309)
T ss_dssp             ---TTTTBCEEEEEEEEEECSSSCEEEEEEEEECGGGGGGE---EECTTCCEEECHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             ---hccccccccEEEEEEecCCCCceeEEEEEecCCcccee---EeCCCCeEEEccHHHHHHHHHHHHHHHHHHHHHcCC
Confidence               146899999999998753   57777777787765432   223223335788888888999999999999999999


Q ss_pred             hhhhh
Q psy2407         238 KIIVY  242 (245)
Q Consensus       238 ~~~~~  242 (245)
                      ++.++
T Consensus       226 ~~~di  230 (309)
T 2ebd_A          226 KPEEV  230 (309)
T ss_dssp             CGGGC
T ss_pred             CHHHC
Confidence            98765

>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A

Probab=100.00  E-value=5.5e-34  Score=251.56  Aligned_cols=231  Identities=14%  Similarity=0.051  Sum_probs=194.9

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEE
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIIT   79 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~   79 (245)
                      |++++|.++++|+|+++++|+++.+.++.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |+++++||.|++
T Consensus        10 m~~~~I~g~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~la~~A~~~al~~a-g~~~~~id~vi~   88 (335)
T 1u6e_A           10 ARSVGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRALSNA-GLSAADIDGVIV   88 (335)
T ss_dssp             CSCEEEEEEEEECCSEEEEHHHHTTSSSCCHHHHHHHHCCSEEEECCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEE
T ss_pred             CCceEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCCceEeecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEE
Confidence            66899999999999999999999998888889987 8999999998889999999999999999997 999999999999


Q ss_pred             EeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccc
Q psy2407          80 CSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTM  159 (245)
Q Consensus        80 ~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~  159 (245)
                      +|+++++..|+.+..|+..||++ ++++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +. 
T Consensus        89 ~t~~~~~~~~~~a~~v~~~lgl~-~~~~~~v~~aC~s~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d--~~-  162 (335)
T 1u6e_A           89 TTNTHFLQTPPAAPMVAASLGAK-GILGFDLSAGAAGFGYALGAAADMIRGGGA--ATMLVVGTEKLSPTIDMYD--RG-  162 (335)
T ss_dssp             ECSCCCCSSSCHHHHHHHHHTCT-TSEEEEEECGGGHHHHHHHHHHHHHHHTSC--SSEEEEEEEECGGGCCTTC--TT-
T ss_pred             EcCCCCCCCChHHHHHHHHhCCC-CCcEeeeccccHHHHHHHHHHHHHHHcCCC--CEEEEEEEcccccccCccc--cc-
Confidence            99999888899999999999994 689999999999999999999999999966  9999999999998877655  22 


Q ss_pred             ccccccccccceeEEEEecCCC--CeeEEeecccccccccccc-----ccC--CCCC--CCcccchhhHHHHHHHHHHHH
Q psy2407         160 EWAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMD-----TCR--PIPD--SEAGNADLSLLSYLDCCAQSF  228 (245)
Q Consensus       160 ~~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~-----~~~--p~~~--~~~~~g~~~~~~~~~~~~~~~  228 (245)
                          ...+|||||+|+||++.+  +++...+.++|++.+.+..     .|+  |...  ...|+|+..++.+.+.+.+++
T Consensus       163 ----~~~~~gDGA~A~vl~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~i  238 (335)
T 1u6e_A          163 ----NCFIFADGAAAVVVGETPFQGIGPTVAGSDGEQADAIRQDIDWITFAQNPSGPRPFVRLEGPAVFRWAAFKMGDVG  238 (335)
T ss_dssp             ----TTTTBCEEEEEEEEEECSSCCBCCCEEEECGGGGGGEEESSCHHHHHTSTTSCCCCEEECHHHHHHHHHHHHHHHH
T ss_pred             ----cceEeccccEEEEEEecCCCCeeEEEEEEcCCcccceeecCCccCcCCCccCccceEEEcCHHHHHHHHHHHHHHH
Confidence                246899999999998753  4444555566665554322     111  1111  124778877777789999999


Q ss_pred             HHHHHHhcchhhhh
Q psy2407         229 KEYKKRVQYKIIVY  242 (245)
Q Consensus       229 ~~~~~~~~~~~~~~  242 (245)
                      ++++++.|+++.++
T Consensus       239 ~~al~~agl~~~dI  252 (335)
T 1u6e_A          239 RRAMDAAGVRPDQI  252 (335)
T ss_dssp             HHHHHHHTCCGGGC
T ss_pred             HHHHHHcCCCHHHC
Confidence            99999999998765

>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A

Probab=100.00  E-value=8.9e-34  Score=248.01  Aligned_cols=227  Identities=15%  Similarity=0.161  Sum_probs=196.1

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |+++|.++++|+|+++++|+++.+..+.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |+++++||.|+++
T Consensus         1 m~~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~gi~~r~~~~~~~~~~~l~~~a~~~al~~a-g~~~~~id~vi~~   79 (313)
T 1zow_A            1 MNVGIKGFGAYAPEKIIDNAYFEQFLDTSDEWISKMTGIKERHWADDDQDTSDLAYEASVKAIADA-GIQPEDIDMIIVA   79 (313)
T ss_dssp             CCEEEEEEEEECCSCEEEGGGGGGTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEE
T ss_pred             CceEEEEEEEECCCccccHHHHHHhcCCCHHHHHHhhCceEEEecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEE
Confidence            5789999999999999999999998888889987 8999999998889999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      ++++++..|+.+..++..||++ +.++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +.. 
T Consensus        80 ~~~~~~~~~~~a~~v~~~lgl~-~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vLv~g~e~~s~~~~~~d--~~~-  153 (313)
T 1zow_A           80 TATGDMPFPTVANMLQERLGTG-KVASMDQLAACSGFMYSMITAKQYVQSGDY--HNILVVGADKLSKITDLTD--RST-  153 (313)
T ss_dssp             CSSCSCSSSCHHHHHHHHHTCC-SCCEEEEECGGGHHHHHHHHHHHHHHTTSC--SCEEEEEEEEGGGTCCTTC--HHH-
T ss_pred             cCCCCCCCCcHHHHHHHHhCCC-CCcEEEECCcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEcccccccCccc--ccc-
Confidence            9998888899999999999995 589999999999999999999999999966  9999999999988776655  221 


Q ss_pred             cccccccccceeEEEEecCCC---CeeEEeeccccccccccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHhc
Q psy2407         161 WAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMDTCRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRVQ  236 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  236 (245)
                          ..+|||||+|+||++.+   +++.+.+.++|.+.+.+.   .|.++ ...|+|+..++.+.+.+.+++++++++.|
T Consensus       154 ----~~~~gdGa~A~vl~~~~~~~~i~~~~~~~~g~~~~~~~---~~~~~~~~~~~g~~~~~~~~~~~~~~i~~al~~ag  226 (313)
T 1zow_A          154 ----AVLFGDGAGAVIIGEVSEGRGIISYEMGSDGTGGKHLY---LDKDTGKLKMNGREVFKFAVRIMGDASTRVVEKAN  226 (313)
T ss_dssp             ----HTTBCEEEEEEEEEECSTTCEEEEEEEEECGGGGGGEE---ECTTTCCEEECHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             ----eeeeccceEEEEEEecCCCCceeEEEEEEcCCCcCeEE---ecCCCCeeEeccHHHHHHHHHHHHHHHHHHHHHcC
Confidence                46899999999998643   577776777777654432   22211 12478888888889999999999999999


Q ss_pred             chhhhh
Q psy2407         237 YKIIVY  242 (245)
Q Consensus       237 ~~~~~~  242 (245)
                      +++.++
T Consensus       227 l~~~di  232 (313)
T 1zow_A          227 LTSDDI  232 (313)
T ss_dssp             CCGGGC
T ss_pred             CCHHHC
Confidence            998865

>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2

Probab=100.00  E-value=1.2e-33  Score=248.21  Aligned_cols=228  Identities=13%  Similarity=0.115  Sum_probs=195.7

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEec
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSE   82 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~   82 (245)
                      ++|.++++|+|+++++|+++.+..+.+++|+. ++||++|+++.++++..+|+.+|+++||+++ |+++++||.|+++++
T Consensus         2 ~~I~~~g~~~P~~~~~~~~~~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~a~~~al~~a-g~~~~~id~vi~~~~   80 (322)
T 1ub7_A            2 SGILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRH-PGALEGVDAVIVATN   80 (322)
T ss_dssp             CEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHS-TTTTTTEEEEEEECS
T ss_pred             cEEEEEEEECCCceecHHHHHHHhCCCHHHHHHhcCceEEeecCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEcC
Confidence            68999999999999999999998888899987 8999999998889999999999999999997 999999999999999


Q ss_pred             cCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccc
Q psy2407          83 SGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWA  162 (245)
Q Consensus        83 ~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~  162 (245)
                      ++++..|+.+..++..||+  +.++++++++|+|++.||..|..+|++|.+  +++||+++|.++..+++.+  +..   
T Consensus        81 ~~~~~~~~~a~~v~~~lgl--~~~~~~v~~aCas~~~al~~A~~~i~~g~~--~~vlv~g~e~~s~~~~~~d--~~~---  151 (322)
T 1ub7_A           81 TPDALFPDTAALVQARFGL--KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWND--RAT---  151 (322)
T ss_dssp             SCSEEESCHHHHHHHHTTC--CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTC--HHH---
T ss_pred             CCCCCCCcHHHHHHHHhCC--CCEEEeeCccchHHHHHHHHHHHHHHcCCC--CEEEEEEechhccccChhh--ccc---
Confidence            8887789999999999999  579999999999999999999999999966  9999999999998876654  211   


Q ss_pred             cccccccceeEEEEecCC---CCeeEEeeccccccccccccc----cCCCC----CCCcccchhhHHHHHHHHHHHHHHH
Q psy2407         163 FFEPSGGAGAVAMLISDK---PEIFQFDIGSNGYYSFEVMDT----CRPIP----DSEAGNADLSLLSYLDCCAQSFKEY  231 (245)
Q Consensus       163 ~~~~~~GDGAaA~ll~~~---~~i~~~~~~~~g~~~~~~~~~----~~p~~----~~~~~~g~~~~~~~~~~~~~~~~~~  231 (245)
                        ..+|||||+|+||++.   .+++...+.++|.+.+.+...    ..|..    ....|+|+..++.+.+.+.++++++
T Consensus       152 --~~~~GdGA~A~vL~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~~~~~~~~~~~g~~~~~~~~~~~~~~i~~a  229 (322)
T 1ub7_A          152 --AVLFGDGGGAAVVGKVREGYGFRSFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEA  229 (322)
T ss_dssp             --HTTBCCEEEEEEEECCCTTCEEEEEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHH
T ss_pred             --ceeeccccEEEEEEecCCCCceeEEEEEEecCCCCeEEeCCCCCCCCccccccceEEecCHHHHHHHHHHHHHHHHHH
Confidence              3579999999999875   357777777788766543210    11322    1135899999999999999999999


Q ss_pred             HHHhcchhhhhc
Q psy2407         232 KKRVQYKIIVYN  243 (245)
Q Consensus       232 ~~~~~~~~~~~~  243 (245)
                      +++.|+++.++.
T Consensus       230 l~~agl~~~did  241 (322)
T 1ub7_A          230 IEKAGLTPEDIR  241 (322)
T ss_dssp             HHHHTCCGGGCS
T ss_pred             HHHcCCCHHHCC
Confidence            999999988653

>3ov2_A Curcumin synthase; type III polyketide synthase, transferase; 2.32A {Curcuma longa} PDB: 3ov3_A

Probab=100.00  E-value=6e-34  Score=257.07  Aligned_cols=230  Identities=19%  Similarity=0.143  Sum_probs=174.2

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc---CCChH---------HHh-hccceeeeecCCCC------------------
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR---KLDTV---------RFE-NLLMQQKSVSLPYE------------------   49 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~---~~~~~---------~~~-~~Gi~~r~~~~~~e------------------   49 (245)
                      |..++|.++|+|+|+++++|+++.+.+   ..+++         +|. ++||++||++.+++                  
T Consensus        14 ~~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~   93 (393)
T 3ov2_A           14 QGPATIMAIGTATPPNLYEQSTFPDFYFRVTNSDDKQELKKKFRRMCEKTMVKKRYLHLTEEILKERPKLCSYKEASFDD   93 (393)
T ss_dssp             SSCCEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHSGGGGSSSSCCHHH
T ss_pred             CCCeEEEEEEeeCCCcccCHHHHHHHHHHhhcccchHHHHHHHHHHHHhcCCceEEeecChhhhccCcccccCCCCCHHH
Confidence            456899999999999999999999864   33332         254 79999999987654                  


Q ss_pred             -------CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHH
Q psy2407          50 -------DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGL  121 (245)
Q Consensus        50 -------~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL  121 (245)
                             +..+|+++|+++||+++ |++++|||+||++|+++ +..|+.+..|+++||+++.+. +++++++|+|++.||
T Consensus        94 r~~~~~~~~~~La~~Aa~~aL~~a-g~~~~dId~vi~~t~t~-~~~p~~a~~v~~~LGl~~~~~~~~~v~~~C~g~~~al  171 (393)
T 3ov2_A           94 RQDIVVEEIPRLAKEAAEKAIKEW-GRPKSEITHLVFCSISG-IDMPGADYRLATLLGLPLTVNRLMIYSQACHMGAAML  171 (393)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-TSCGGGCCEEEEEESSC-CCBSCHHHHHHHHHTCCTTSEEEEEESCCTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEeCC-CCCCCHHHHHHHHcCCCCCcceeeEEcCccHHHHHHH
Confidence                   58999999999999997 99999999999999999 788999999999999964443 899999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEEecccc-ccccCcccccccccccccccccceeEEEEecCCC--CeeE--Eeecccccccc
Q psy2407         122 QMAINFILSKVSPGAKALVIATDISR-FFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQ--FDIGSNGYYSF  196 (245)
Q Consensus       122 ~~A~~~i~sg~~~~~~aLVv~~e~~s-~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~--~~~~~~g~~~~  196 (245)
                      .+|..+|++|.+  ++||||++|++| .+.++.+  +.........+|||||+|+||++++  ++..  +.+.++++.. 
T Consensus       172 ~~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d--~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~~-  246 (393)
T 3ov2_A          172 RIAKDLAENNRG--ARVLVVACEITVLSFRGPNE--GDFEALAGQAGFGDGAGAVVVGADPLEGIEKPIYEIAAAMQET-  246 (393)
T ss_dssp             HHHHHHHHHSTT--CEEEEEEEECGGGTCCCCCT--TCHHHHHHHHHBCCEEEEEEEESSCCTTTCCCSEEEEEEEEEE-
T ss_pred             HHHHHHHHcCCC--CEEEEEEEeccchhccCCcc--cchhhhcccccccCccEEEEEEecCCCcccCceeEEEecCcEE-
Confidence            999999999966  999999999997 4556655  2111011246899999999998754  2111  1222222210 


Q ss_pred             cccc-----ccCCCCC--CCcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         197 EVMD-----TCRPIPD--SEAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       197 ~~~~-----~~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                       +++     .|+....  ...| ++..++...+.+.+++++++++.|+++
T Consensus       247 -~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~gl~~  294 (393)
T 3ov2_A          247 -VAESQGAVGGHLRAFGWTFYF-LNQLPAIIADNLGRSLERALAPLGVRE  294 (393)
T ss_dssp             -CTTCTTSEEEEEETTEEEEEE-CTTHHHHHHTTSHHHHHHHHGGGTCCS
T ss_pred             -ecCCcccCceeeeCCceEEEE-CcHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence             000     0100000  0123 367777778899999999999999985

>3oit_A OS07G0271500 protein; type III polyketide synthases, transferase; 2.00A {Oryza sativa} PDB: 3ale_A

Probab=100.00  E-value=1.5e-33  Score=253.98  Aligned_cols=228  Identities=16%  Similarity=0.149  Sum_probs=169.6

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcC---CCh---------HHHh-hccceeeeecCCCC-------------------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRK---LDT---------VRFE-NLLMQQKSVSLPYE-------------------   49 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~---~~~---------~~~~-~~Gi~~r~~~~~~e-------------------   49 (245)
                      ..++|.++|+|+|+++++|+|+.+.+.   .++         +||. ++||++||++.+++                   
T Consensus         9 ~~~~I~~ig~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~p~~~~r   88 (387)
T 3oit_A            9 GLAAVLAIGTANPPNCVTQEEIPDFYFRVTNSDHLTALKDKFKRICQEMGVQRRYLHHTEEMLSAHPEFVDRDAPSLDAR   88 (387)
T ss_dssp             SCCEEEEEEEECCSEEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTSSCCEEEESCCHHHHHHCGGGTCTTSCCHHHH
T ss_pred             CCeEEEEEEeeCCCceecHHHHHHHHHHHhCccchHHHHHHHHHHHHhcCcceeeeecCHHHhccCccccccCCCCHHHH
Confidence            468999999999999999999998752   122         2555 79999999987765                   


Q ss_pred             ------CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHHH
Q psy2407          50 ------DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGLQ  122 (245)
Q Consensus        50 ------~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL~  122 (245)
                            +..+|+++|+++||+++ |++++|||+||++|+++ +..|+.+..|+++||+++.+. +++++++|+|++.||.
T Consensus        89 ~~~~~~~~~~La~~Aa~~AL~~a-g~~~~dId~li~~t~t~-~~~p~~a~~v~~~LGl~~~~~~~~~~~~~C~~~~~al~  166 (387)
T 3oit_A           89 LDIAADAVPELAAEAAKKAIAEW-GRPAADITHLVVTTNSG-AHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALR  166 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-TSCGGGCCEEEEEESSC-CEESCHHHHHHHHHTCCTTCEEEEEECCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeeCC-CCcccHHHHHHHHhCCCCCcceeeEECchhHHHHHHHH
Confidence                  68999999999999997 99999999999999998 778999999999999965443 8999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEEecccc-ccccCcccccccccccccccccceeEEEEecCCC-Cee--EEeecccccccccc
Q psy2407         123 MAINFILSKVSPGAKALVIATDISR-FFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP-EIF--QFDIGSNGYYSFEV  198 (245)
Q Consensus       123 ~A~~~i~sg~~~~~~aLVv~~e~~s-~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~-~i~--~~~~~~~g~~~~~~  198 (245)
                      +|..+|++|..  ++||||++|.+| .+.++.+  +.........+|||||+|+||++++ ++.  .+.+.+.++..  .
T Consensus       167 ~A~~~i~sg~~--~~vLvvg~E~~s~~~~~~~d--~~~~~~~~~~lFGDGAaA~vl~~~~~~~~~~~~~~~~~~~~~--~  240 (387)
T 3oit_A          167 LAKDLAENSRG--ARVLVVAAELTLMYFTGPDE--GCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSAAQTI--I  240 (387)
T ss_dssp             HHHHHHHSSTT--CEEEEEEEECGGGTCCCCCS--SSCHHHHHHHHBCCEEEEEEEESSCCSSCCCCEEEEEEEEEE--C
T ss_pred             HHHHHHhcCCC--CEEEEEEEeccchhccCccc--cchHhhhcccccccceEEEEEecCCCcccCCceEEEecccEE--e
Confidence            99999999965  999999999997 5555555  2110011246899999999998754 211  01222222111  1


Q ss_pred             cc-----ccCCCCC-C-CcccchhhHHHHHHHHHHHHHHHHHHh----cch
Q psy2407         199 MD-----TCRPIPD-S-EAGNADLSLLSYLDCCAQSFKEYKKRV----QYK  238 (245)
Q Consensus       199 ~~-----~~~p~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~----~~~  238 (245)
                      ++     .|....+ . ..|. +..++...+.+.+++++++++.    |++
T Consensus       241 p~~~~~~~~~~~~~g~~~~~~-~~v~~~~~~~~~~~~~~~L~~~~~~~gl~  290 (387)
T 3oit_A          241 PESDHALNMRFTERRLDGVLG-RQVPGLIGDNVERCLLDMFGPLLGGDGGG  290 (387)
T ss_dssp             TTCTTSEEEEECSSSEEEEEC-TTHHHHHHHHHHHHHHHHTGGGCC-----
T ss_pred             CCChhhccceeecCCeEEEEC-cHHHHHHHHHHHHHHHHHHHhhcccCCCC
Confidence            10     0110000 0 1132 6667777899999999999999    877

>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A

Probab=100.00  E-value=1.5e-32  Score=247.90  Aligned_cols=231  Identities=14%  Similarity=0.112  Sum_probs=182.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCC---------hHHHh-hccceeeee-cCC----------------------C
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLD---------TVRFE-NLLMQQKSV-SLP----------------------Y   48 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~---------~~~~~-~~Gi~~r~~-~~~----------------------~   48 (245)
                      |+++|.++|+|+|+++++|+++.+..+..         .+||. ++||++||+ +.+                      +
T Consensus        31 ~~~~I~~ig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~a~~~~~~~~~~~~~p~~~~~r~~~~~  110 (393)
T 1ted_A           31 TVAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFY  110 (393)
T ss_dssp             CEEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHH
T ss_pred             cccEEEEeeeeCCCcccCHHHHHHHHHHhcccccHHHHHHHHHHhCCcCcceeeecChHhcccccccCCCCHHHHHHHHh
Confidence            56899999999999999999999877653         35776 899999999 765                      3


Q ss_pred             CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHH
Q psy2407          49 EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINF  127 (245)
Q Consensus        49 e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~  127 (245)
                      ++..+|+.+|+++||+++ |+++++||.||++|+++ +..|+.+..|+..||++..++++++ +++|+|++.||..|..+
T Consensus       111 ~~~~~la~~Aa~~aL~~a-gl~~~~Id~vi~~t~~~-~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCas~~~Al~~A~~~  188 (393)
T 1ted_A          111 EHAVPLAVDVSKRALAGL-PYRAAEIGLLVLATSTG-FIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNY  188 (393)
T ss_dssp             HHHHHHHHHHHHHHHTTC-CCCGGGEEEEEEEESSC-CCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEeCC-CccChHHHHHHHHcCcCCCcceeEeccchhHHHHHHHHHHHHH
Confidence            678999999999999997 99999999999999988 6789999999999999655788998 89999999999999999


Q ss_pred             HhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC-------C---eeEE--eeccccccc
Q psy2407         128 ILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP-------E---IFQF--DIGSNGYYS  195 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~-------~---i~~~--~~~~~g~~~  195 (245)
                      |++|.+  ++|||+++|.++..+++.. +|...  +...+|||||+|+||++.+       .   ++..  .+.+++...
T Consensus       189 i~~G~~--~~vLv~g~e~~s~~~~~~~-~r~~~--~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~i~~~~~~~~~d~~~~  263 (393)
T 1ted_A          189 VRAHPA--MKALVVCIELCSVNAVFAD-DINDV--VIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDG  263 (393)
T ss_dssp             HHHSTT--CEEEEEEEEECGGGCCCCS-SHHHH--HHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTS
T ss_pred             HHcCCC--CEEEEEEEEeccccCCCCC-CHHHh--hhhhhhcCccEEEEEecCCCccccCcceeeeeccceEEcCCchhh
Confidence            999966  9999999999998776421 12211  1146899999999998643       1   2222  111333221


Q ss_pred             cccccccCCCC-CCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         196 FEVMDTCRPIP-DSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       196 ~~~~~~~~p~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                          ..|+... ....++|+..++.+.+.+.+++++++++.|+++.++.
T Consensus       264 ----~~~~~~~~g~~~~~g~~v~~~~~~~~~~~i~~aL~~agl~~~dId  308 (393)
T 1ted_A          264 ----IVLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDID  308 (393)
T ss_dssp             ----EEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCS
T ss_pred             ----ccceecCCCeEEecCchHHHHHHHHHHHHHHHHHHHcCCCHhHCC
Confidence                1222211 1124578888888899999999999999999988653

>3e1h_A PKSIIINC, putative uncharacterized protein; resorcinolic lipid synthase, type III PKS, acyltransferase, transferase; 2.58A {Neurospora crassa}

Probab=100.00  E-value=5.1e-32  Score=248.56  Aligned_cols=235  Identities=14%  Similarity=0.102  Sum_probs=173.6

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcC----CC--hHH---Hh-hccceeeeecCCCC---------------------C
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRK----LD--TVR---FE-NLLMQQKSVSLPYE---------------------D   50 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~----~~--~~~---~~-~~Gi~~r~~~~~~e---------------------~   50 (245)
                      |+++|.++|+|+|+++++|+++.+..+    ..  .+|   |. ++||++||++.+++                     .
T Consensus        30 ~~v~I~gigt~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~p~~~~~~~ps~~~r~~~~~~~  109 (465)
T 3e1h_A           30 LGLSITGLGVQYPPYSLGPDAIDILSKRYHPESPAMKKVLAINRYTGIDQRSSIGNPDHPLVNKPNPPTVKELHEVFMSD  109 (465)
T ss_dssp             CCEEEEEEEEECCSSCCBCTHHHHHTCSSSCCCHHHHHHHHHTTTSCCCCBCCSSCTTCGGGSSSSCCCHHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCcEEcHHHHHHHHHHhcccchhHHHHHHHHHhcCCceEEEeecccCcccccccCCCHHHHHHHHHhh
Confidence            679999999999999999999977543    22  244   43 78999999985432                     2


Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHHHh
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINFIL  129 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~  129 (245)
                      +.+|+++|+++||+++ |++++|||+||++|++ ++..|+.+.+|+++||+++.+.+||+ +++|+|+++||.+|..+|+
T Consensus       110 a~~La~~Aa~~AL~~a-gi~~~dId~li~~t~t-~~~~P~~a~~v~~~LGl~~~~~~~dv~~~~Csgg~~AL~~A~~~i~  187 (465)
T 3e1h_A          110 GVPLAVEASRKAMAEA-RLVPAQITHMVSTTCT-DSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRTAANLCL  187 (465)
T ss_dssp             THHHHHHHHHHHHHHH-TCCGGGCCEEEEECSS-CCCSSCHHHHHHHHHTCCTTCEEEEECSCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHhCCCCCeeEEEecCCcchHHHHHHHHHHHHHh
Confidence            4699999999999997 9999999999999988 68899999999999999644448999 7999999999999999999


Q ss_pred             c----CCCCCCeEEEEEeccccccccCcccccc--cccccccccccceeEEEEecCCCC----------eeEEeeccccc
Q psy2407         130 S----KVSPGAKALVIATDISRFFVTEDKNELT--MEWAFFEPSGGAGAVAMLISDKPE----------IFQFDIGSNGY  193 (245)
Q Consensus       130 s----g~~~~~~aLVv~~e~~s~~~~~~~~~~~--~~~~~~~~~~GDGAaA~ll~~~~~----------i~~~~~~~~g~  193 (245)
                      +    |.+  ++||||++|++|..+++...+..  ..-.....+|||||+|+||++++.          ++.....+.+.
T Consensus       188 a~~~~G~~--~~vLVvg~E~~S~~~~~~~~~~~~~~~d~~t~~LFGDGAaAvVl~~~~~~~~~~~~~~~l~~~~~~~~p~  265 (465)
T 3e1h_A          188 GHTARGKP--ARILVLALEVSTTMVRSELESIDALQETRIGIALFSDCASAVILSNGIGEAPGKPAIYDLLGWENRVIPD  265 (465)
T ss_dssp             HHHHTTCC--CEEEEEEEECCGGGHHHHHHHHHHHTCCCCHHHHBCCEEEEEEEECCTTCCTTCCCSEEEEEEEEEECTT
T ss_pred             cccccCCC--CEEEEEEEeecchhcCcccccccccccccccccccccceeEEEEEccCCCccccccceeeccceEEEecC
Confidence            7    866  99999999999998864210000  000112468999999999987531          11111111111


Q ss_pred             cccccccccCCCCC-CCcccchhhHHHHHHHHHHHHHHHHHHh-------cchhhhh
Q psy2407         194 YSFEVMDTCRPIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRV-------QYKIIVY  242 (245)
Q Consensus       194 ~~~~~~~~~~p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~  242 (245)
                      ..+.+  .|..... ...|+++..++...+.+.+++++++++.       |+++.++
T Consensus       266 ~~~~~--~~~~~~~g~~~~~g~~V~~~a~~~v~~~i~~~L~~~g~~L~~agl~~~DI  320 (465)
T 3e1h_A          266 SEHDL--GFDVDPMGWKVVLSPRVPVLAKASLQPTYADLLSSLQDQLPSSYQKPADF  320 (465)
T ss_dssp             CTTTE--EEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHHGGGSCTTSCSGGGS
T ss_pred             Ccccc--CccccCCCceEecChHHHHHHHHHHHHHHHHHHHhccccccccCCCHHHc
Confidence            00000  1111111 1258888999999999999999999884       4665543

>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2

Probab=99.98  E-value=2.4e-32  Score=245.77  Aligned_cols=232  Identities=12%  Similarity=0.071  Sum_probs=176.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCC------h---HHHh-hccceeeeecCC-----------------CCCHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLD------T---VRFE-NLLMQQKSVSLP-----------------YEDPVSF   54 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~------~---~~~~-~~Gi~~r~~~~~-----------------~e~~~~l   54 (245)
                      |+++|.++++|+|+++++|+++.+.++..      .   +||. ++||++||++.+                 +++..+|
T Consensus         8 ~m~~I~gig~~~P~~~v~~~~l~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~r~~~~~~~~~~l   87 (382)
T 1u0m_A            8 FMATLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSR   87 (382)
T ss_dssp             --CEECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHH
T ss_pred             cceEEEEEEEeCCCcccCHHHHHHHHHHhccChhhHHHHHHHHHhcCCCcceeecChhhhccCCChhHHHHHHHHHHHHH
Confidence            45899999999999999999998776432      2   3454 899999999866                 6778999


Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHHHhcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINFILSKVS  133 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~sg~~  133 (245)
                      +.+|+++||+++ |+++++||.||++|+++ +..|+.+..|+..||++.+++++++ +++|+|++.||..|..+|++|.+
T Consensus        88 a~~Aa~~aL~~a-gl~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~Al~~A~~~i~~g~~  165 (382)
T 1u0m_A           88 VPAVIQRALDDA-ELLATDIDVIIYVSCTG-FMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPE  165 (382)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEEECSSS-CCSSCHHHHHHHHTTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHh-CCCHHHCCEEEEEecCC-CCCCcHHHHHHHHhCCCCCcceEEccCCcCHHHHHHHHHHHHHHHcCCC
Confidence            999999999997 99999999999999988 6789999999999999655899999 89999999999999999999966


Q ss_pred             CCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC----CeeEEeeccccccccccccccCCCCC-C
Q psy2407         134 PGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP----EIFQFDIGSNGYYSFEVMDTCRPIPD-S  208 (245)
Q Consensus       134 ~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~----~i~~~~~~~~g~~~~~~~~~~~p~~~-~  208 (245)
                        +++||+++|.++..+++.+..+...  +...+|||||+|+||++.+    +|+.......+...+.  ..|+.... .
T Consensus       166 --~~vLv~g~e~~s~~~~~~d~~~~~~--~~~~lfGDGA~A~vL~~~~~~g~~i~~~~~~~~~~~~~~--~~~~~~~~g~  239 (382)
T 1u0m_A          166 --ANALIVACEFCSLCYQPTDLGVGSL--LCNGLFGDGIAAAVVRGRGGTGVRLERNGSYLIPKTEDW--IMYDVKATGF  239 (382)
T ss_dssp             --CEEEEEEEEEGGGGCCTTCCSHHHH--HHHHHBCEEEEEEEEETTTCSEEEEEEEEEEECSSCTTT--EEEEEETTEE
T ss_pred             --CEEEEEEEeccchhcCcccCCHHHh--hccchhcCCcEEEEEeccCCCCcEEEEeeeEecCChHHh--cCceecCCce
Confidence              9999999999998887765322211  1146799999999998654    2554443222211110  01211111 1


Q ss_pred             CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407         209 EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVY  242 (245)
Q Consensus       209 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (245)
                      ....++..++.+.+.+. ++++++++.|+++.++
T Consensus       240 ~~~~~~~v~~~~~~~~~-~i~~aL~~agl~~~dI  272 (382)
T 1u0m_A          240 HFLLDKRVPATMEPLAP-ALKELAGEHGWDASDL  272 (382)
T ss_dssp             EEEECTTTGGGHHHHHH-HHHHHHHTTSCCSSCC
T ss_pred             EEEeCcHHHHHHHHHHH-HHHHHHHHcCCCHHHC
Confidence            12234444555677788 8999999999988754

>3a5r_A Benzalacetone synthase; chalcone synthase, type III polyketide synthase, transferase, acyltransferase; HET: HC4; 1.60A {Rheum palmatum} PDB: 3a5q_A* 3a5s_A

Probab=99.97  E-value=1.9e-31  Score=240.35  Aligned_cols=227  Identities=13%  Similarity=0.159  Sum_probs=173.5

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHc-C-C-C---------hHHHh-hccceeeeecCCC---------------------
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYR-K-L-D---------TVRFE-NLLMQQKSVSLPY---------------------   48 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~-~-~-~---------~~~~~-~~Gi~~r~~~~~~---------------------   48 (245)
                      .++|.++|+|+|+++++|+++.+.+ . . +         .+||. ++||++||++.++                     
T Consensus        12 ~~~I~gig~~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~~~~~~~p~~~~~~~~~~~~r~   91 (387)
T 3a5r_A           12 LATVMAIGTANPPNCYYQADFPDFYFRVTNSDHLINLKQKFKRLCENSRIEKRYLHVTEEILKENPNIAAYEATSLNVRH   91 (387)
T ss_dssp             CEEEEEEEEECCSCEEETTTHHHHHHHHTTCTTCHHHHHHHHHHHHTTTCCEEECSCCHHHHHHCHHHHSSSSSCHHHHH
T ss_pred             CcEEEEeeecCCCcccCHHHHHHHHHHhcccccchhhHHHHHHHHHhCCCCceEEecChhhhccCcccccccCCCHHHHH
Confidence            4899999999999999999999765 2 1 1         34666 8999999998665                     


Q ss_pred             ----CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHHHH
Q psy2407          49 ----EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGLQM  123 (245)
Q Consensus        49 ----e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL~~  123 (245)
                          ++..+|+.+|+++||+++ |++++|||+||++|+++ +..|+.+..|++.||++..++ +++++++|+|++.||.+
T Consensus        92 ~~~~~~~~~La~~Aa~~aL~~a-g~~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl~~~~~~~~~v~~aC~s~~~al~~  169 (387)
T 3a5r_A           92 KMQVKGVAELGKEAALKAIKEW-GQPKSKITHLIVCCLAG-VDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRL  169 (387)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH-CSCGGGCCEEEEEESSC-CEESCHHHHHHHHTTCCTTCEEEEEESCCTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCC-CCCCcHHHHHHHHcCcCCCcceeeeEccccHHHHHHHHH
Confidence                578999999999999997 99999999999999886 678999999999999964454 89999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEEeccccc-cccCcccccccccccccccccceeEEEEecCCC--CeeE--Eeecccccccccc
Q psy2407         124 AINFILSKVSPGAKALVIATDISRF-FVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQ--FDIGSNGYYSFEV  198 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv~~e~~s~-~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~--~~~~~~g~~~~~~  198 (245)
                      |..+|++|.+  ++|||+++|.+|. +.++.+.++...  ....+|||||+|+||++.+  +++.  +.+.+++...  +
T Consensus       170 A~~~i~~g~~--~~vLvvg~e~~s~~~~~~~d~~~~~~--~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~~~~--~  243 (387)
T 3a5r_A          170 AKDIAENNKG--ARVLIVCSEMTTTCFRGPSETHLDSM--IGQAILGDGAAAVIVGADPDLTVERPIFELVSTAQTI--V  243 (387)
T ss_dssp             HHHHHHHSTT--CEEEEEEEECCTTTCCCCCSSCCSST--THHHHBCCEEEEEEEESSCCTTTCCCCEEEEEEEEEE--C
T ss_pred             HHHHHHhCCC--CEEEEEEEeccchhhcCCCccchhhc--cccceeccceeEEEEecCCCccccCCceEEEeeeEEE--e
Confidence            9999999966  9999999999987 335443211111  1245799999999998754  2322  3333333211  1


Q ss_pred             cc-----ccCCCCC-C-CcccchhhHHHHHHHHHHHHHHHHHHhcch
Q psy2407         199 MD-----TCRPIPD-S-EAGNADLSLLSYLDCCAQSFKEYKKRVQYK  238 (245)
Q Consensus       199 ~~-----~~~p~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  238 (245)
                      ++     .|..... . ..| ++..++.+.+.+.+++++++++.|++
T Consensus       244 p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~gl~  289 (387)
T 3a5r_A          244 PESHGAIEGHLLESGLSFHL-YKTVPTLISNNIKTCLSDAFTPLNIS  289 (387)
T ss_dssp             TTCTTSEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred             CCChHhcCceEcCCCeEEEe-cchHHHHHHHHHHHHHHHHHHhcCCC
Confidence            11     0000000 0 113 56777778999999999999999987

>1xes_A Dihydropinosylvin synthase; native structure, transferase; HET: 3IO; 1.70A {Pinus sylvestris} PDB: 1xet_A* 1u0u_A

Probab=99.97  E-value=3.5e-31  Score=240.49  Aligned_cols=228  Identities=16%  Similarity=0.127  Sum_probs=172.9

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCC---C---------hHHHh-hccceeeeecCCC--------------------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKL---D---------TVRFE-NLLMQQKSVSLPY--------------------   48 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~---~---------~~~~~-~~Gi~~r~~~~~~--------------------   48 (245)
                      +.++|.++|+|+|+++++|+++.+.++.   +         .+||. ++||++||++.++                    
T Consensus        37 ~~~~I~gig~~lP~~~v~n~el~~~~~~~~~~~~~~~~~~~~~~i~~~tGI~~R~~a~~~~~~~~~p~~~~~~~~~~~~~  116 (413)
T 1xes_A           37 GFASILAIGTANPPNAVDQSTYPDFYFRITGNEHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSLDA  116 (413)
T ss_dssp             SCEEEEEEEEECCSCEEEGGGHHHHHHHHTTCTTCHHHHHHHHHHHHTSCCCEEECSCCHHHHHTCHHHHSSSSSCCHHH
T ss_pred             CCeEEEEEeecCCCCccCHHHHHHHHHHhccccchhhhHHHHHHHHhhcCcCceEEeeChhhhccCccccccccCCCHHH
Confidence            5689999999999999999999976521   1         24665 8999999998654                    


Q ss_pred             ------CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eeeecCcchhHHHHH
Q psy2407          49 ------EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFELKQACYSCTAGL  121 (245)
Q Consensus        49 ------e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~dv~~~C~~~~~aL  121 (245)
                            ++..+|+.+|+++||+++ |++++|||+||++|+++ +..|+.+.+|+..||++..++ +++++++|+|++.||
T Consensus       117 r~~~~~~~~~~La~~Aa~~AL~~a-gl~~~~Id~li~~t~~~-~~~p~~a~~v~~~lGl~~~~~~~~~v~~aCas~~~AL  194 (413)
T 1xes_A          117 RQAMLAMEVPRLAKEAAEKAIQEW-GQSKSGITHLIFCSTTT-PDLPGADFEVAKLLGLHPSVKRVGVFQHGCFAGGTVL  194 (413)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-CSCGGGCCEEEEEESCC-CEESCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEEeCC-CccchHHHHHHHHcCcCCccchhceecCccHHHHHHH
Confidence                  378999999999999997 99999999999999988 678999999999999964453 899999999999999


Q ss_pred             HHHHHHHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCC--CeeE--Eeecccccccc
Q psy2407         122 QMAINFILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQ--FDIGSNGYYSF  196 (245)
Q Consensus       122 ~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~--~~~~~~g~~~~  196 (245)
                      .+|..+|++|.+  ++|||+++|.++..+ ++.+.++..  .....+|||||+|+||++.+  ++..  +.+.+++... 
T Consensus       195 ~~A~~~i~~G~~--~~vLvvg~E~~s~~~~~~~d~~~~~--~~~~~lfGDGA~A~vl~~~~~~~~~~~~~~l~~~~~~~-  269 (413)
T 1xes_A          195 RMAKDLAENNRG--ARVLVICSETTAVTFRGPSETHLDS--LVGQALFGDGASALIVGADPIPQVEKACFEIVWTAQTV-  269 (413)
T ss_dssp             HHHHHHHHTSTT--CCEEEEEEECTTTTCCCCCTTCHHH--HHHHHHBCCEEEEEEEESSCCTTTSCCSEEEEEEEEEE-
T ss_pred             HHHHHHHHcCCC--CEEEEEEehhhhhhhcCCCccchhh--cccceeEecccEEEEEecCCCccccCCceEEEeeeeEE-
Confidence            999999999966  999999999998733 443311111  11246899999999998754  2222  2333333211 


Q ss_pred             ccccc-----cCCCCC-C-CcccchhhHHHHHHHHHHHHHHHHHHhcch
Q psy2407         197 EVMDT-----CRPIPD-S-EAGNADLSLLSYLDCCAQSFKEYKKRVQYK  238 (245)
Q Consensus       197 ~~~~~-----~~p~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  238 (245)
                       +++.     |....+ . ..| ++..++.+.+.+.+++++++++.|++
T Consensus       270 -~p~~~~~~~~~~~~~g~~~~~-~~~v~~~~~~~~~~~i~~~L~~~gl~  316 (413)
T 1xes_A          270 -VPNSEGAIGGKVREVGLTFQL-KGAVPDLISANIENCMVEAFSQFKIS  316 (413)
T ss_dssp             -CTTCTTTEEEEEETTEEEEEE-CTTHHHHHHHHHHHHHHHHHGGGTCC
T ss_pred             -cCCChhhcCcEEecCceEEEe-cccHHHHHHHHHHHHHHHHHHhcCCC
Confidence             1110     000000 0 113 56677778999999999999999987

>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum}

Probab=99.97  E-value=5.3e-31  Score=236.12  Aligned_cols=231  Identities=13%  Similarity=0.132  Sum_probs=175.9

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcC--C--C------hHHHh-hccceeeeecCCC----------------------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRK--L--D------TVRFE-NLLMQQKSVSLPY----------------------   48 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~--~--~------~~~~~-~~Gi~~r~~~~~~----------------------   48 (245)
                      ++++|.++|+|+|+++++|+++.+.++  .  +      .+|+. ++||++||++.++                      
T Consensus        12 ~~v~I~g~g~~~P~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (374)
T 2h84_A           12 NNSFVLGIGISVPGEPISQQSLKDSISNDFSDKAETNEKVKRIFEQSQIKTRHLVRDYTKPENSIKFRHLETITDVNNQF   91 (374)
T ss_dssp             CCCEEEEEEEECSSSCEEHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCCCEECCSSCTTSGGGCGGGGGGCCHHHHHHHH
T ss_pred             CCeEEEEEEEeCCCcccCHHHHHHHHHHhhccChHHHHHHHHHHHhCCcCcceeecCccccccccccCChHHHHHHHHHH
Confidence            368999999999999999999998653  1  1      24455 8999999998777                      


Q ss_pred             -CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHH
Q psy2407          49 -EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAIN  126 (245)
Q Consensus        49 -e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~  126 (245)
                       ++..+|+.+|+++||+++ |+++++||.||++|+++ +..|+.+..|+..||+++.+++++++ ++|+|++.||.+|..
T Consensus        92 ~~~~~~la~~Aa~~al~~a-g~~~~~id~vi~~t~~~-~~~p~~a~~v~~~lGl~~~~~~~~v~~~aCss~~~al~~A~~  169 (374)
T 2h84_A           92 KKVVPDLAQQACLRALKDW-GGDKGDITHIVSVTSTG-IIIPDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAAS  169 (374)
T ss_dssp             HHHHHHHHHHHHHHHHHHH-CSCGGGCCEEEEEESSC-CCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeeCC-CCCCcHHHHHHHHcCcCCCCceEEecCCcCHHHHHHHHHHHH
Confidence             788999999999999997 99999999999999887 67899999999999996558999996 899999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccccc-cCcccccccccccccccccceeEEEEecCCC-----CeeEEeecccccccc-ccc
Q psy2407         127 FILSKVSPGAKALVIATDISRFFV-TEDKNELTMEWAFFEPSGGAGAVAMLISDKP-----EIFQFDIGSNGYYSF-EVM  199 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~~~-~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~-----~i~~~~~~~~g~~~~-~~~  199 (245)
                      +|++|.+  ++|||+++|.++..+ ++.+  |...  +...+|||||+|+||++.+     +++  .+.++|+... ...
T Consensus       170 ~i~~g~~--~~vLv~g~e~~s~~~~~~~d--r~~~--~~~~lfGDGA~A~vL~~~~~~~~~~~~--~l~~~g~~~~~~~~  241 (374)
T 2h84_A          170 LAKASPR--NRILVVCTEVCSLHFSNTDG--GDQM--VASSIFADGSAAYIIGCNPRIEETPLY--EVMCSINRSFPNTE  241 (374)
T ss_dssp             HHTTCTT--CEEEEEEEECCGGGCCCSSS--HHHH--HHHHHBCCEEEEEEEESSCCTTCCCCE--EEEEEEEEECSSCT
T ss_pred             HHHcCCC--CEEEEEEEEecchhhcCCCC--HHHH--hhhhhhccCcEEEEEecCCCcccCCce--eEEeeeeEEeCCCc
Confidence            9999966  999999999998866 5544  3211  1246799999999998753     232  2333333110 000


Q ss_pred             c--ccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhc------chhhhh
Q psy2407         200 D--TCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQ------YKIIVY  242 (245)
Q Consensus       200 ~--~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~  242 (245)
                      +  .|....+. ....++..+....+.+.+++++++++.|      +++.++
T Consensus       242 ~~~~~~~~~~g~~~~~~~~v~~~~~~~~~~~i~~~L~~ag~~~~~~l~~~di  293 (374)
T 2h84_A          242 NAMVWDLEKEGWNLGLDASIPIVIGSGIEAFVDTLLDKAKLQTSTAISAKDC  293 (374)
T ss_dssp             TSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHHTTTSCSCCCSSSS
T ss_pred             ccceeEEecCcEEEEeCchHHHHHHHHHHHHHHHHHHhcCCccccCCChhhc
Confidence            0  11111110 0113455666668889999999999999      887654

>3v7i_A Putative polyketide synthase; type III polyketide synthase, acyltransferase, transferase,; 2.90A {Streptomyces coelicolor}

Probab=99.97  E-value=8.4e-31  Score=237.46  Aligned_cols=227  Identities=13%  Similarity=0.146  Sum_probs=171.7

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcC----C-C-hH---HHh-hccceeeeecCCC-----------------------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRK----L-D-TV---RFE-NLLMQQKSVSLPY-----------------------   48 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~----~-~-~~---~~~-~~Gi~~r~~~~~~-----------------------   48 (245)
                      |.++|.+||+++|+++++++++.+++.    . + ..   ++. ++||++||+..+.                       
T Consensus        25 m~~~i~~i~ta~P~~~~~q~~~~~~~~~~~~~~~~~~~~~~i~~~sgI~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  104 (413)
T 3v7i_A           25 MAAYLCAPAVIHGEHSVETREIVEEVRGRHPHAPWAPRIDGIAASTGIESRGWMLPLEAAVAPGGGGDLGAAREALVRDG  104 (413)
T ss_dssp             CCEEEECCEEEECSEEEEHHHHHHHHHHHCSSCSSGGGHHHHHHHHTCSEEEESSCHHHHHSCCCCCCCHHHHHHC----
T ss_pred             CCeEEEeeEeeCCCcccCHHHHHHHHHHhcccchhHHHHHHHHHhCCcCeeeeecCHHHhcccccccccccccccccccc
Confidence            578999999999999999999987642    1 1 11   222 6899999987541                       


Q ss_pred             ------------------------------CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHH
Q psy2407          49 ------------------------------EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY   98 (245)
Q Consensus        49 ------------------------------e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~   98 (245)
                                                    ++..+|+++|+++||+++ |++++|||+||++|+++ +..|+.+..|+++
T Consensus       105 ~~n~~l~~~~~~~e~i~~rtgi~~R~~~~~~~~~~La~~Aa~~AL~~a-gi~~~dId~li~~t~t~-~~~P~~a~~v~~~  182 (413)
T 3v7i_A          105 FTEQDANRAIAALKAVPASQTVQERTAPAWEAVQAYGERAARGALQIA-GLDVADVDCLITSNSTT-PALPGLDVALANR  182 (413)
T ss_dssp             --CHHHHHHHHHHHTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECCSS-CCSSCHHHHHHHH
T ss_pred             cchhhhhhhcCcccceecCCCHHHhCcccccCHHHHHHHHHHHHHHHh-CcCHHHCCEEEEEccCC-CCcCHHHHHHHHH
Confidence                                          135689999999999997 99999999999999998 5789999999999


Q ss_pred             cCCCCCcceeee-cCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEe
Q psy2407          99 LGLNRNCRLFEL-KQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLI  177 (245)
Q Consensus        99 LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll  177 (245)
                      ||++++++++++ +++|+|++.||.+|..+|++|..  ++||||++|++|..+++++  +.+...+...+|||||+|+||
T Consensus       183 LGl~~~~~~~~v~~~~Cagg~~AL~~A~~~i~ag~~--~~vLvvg~E~~S~~~~~~d--~~~~~lv~~~LFGDGAaAvvl  258 (413)
T 3v7i_A          183 LPLRGDTMLLPATQWACVAGTRSLALAADLVAADPD--RVVLVVISEALSTTYQPAD--DTLESLIVRLLFADTAVAAVV  258 (413)
T ss_dssp             TTCCTTCEEEEESSCGGGHHHHHHHHHHHHHHHCTT--CEEEEEEEECGGGGCCSSC--CSTTHHHHHHHBCCEEEEEEE
T ss_pred             hCCCCCceEEEeeCCccHHHHHHHHHHHHHHhcCCC--CEEEEEEEeccccccCccc--cchhhhhcceeeccccEEEEE
Confidence            999766899999 89999999999999999999965  9999999999999998876  333222335689999999999


Q ss_pred             cCCCC-eeEEeeccccccccccccc-----cCCCCC--CCcccchhhHHHHHHHHHHHHHHHHH------Hhcch
Q psy2407         178 SDKPE-IFQFDIGSNGYYSFEVMDT-----CRPIPD--SEAGNADLSLLSYLDCCAQSFKEYKK------RVQYK  238 (245)
Q Consensus       178 ~~~~~-i~~~~~~~~g~~~~~~~~~-----~~p~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~------~~~~~  238 (245)
                      ++++. -..+.+  ++.....+++.     |+....  ...|+++ .. .+++.+.++++++++      +.||+
T Consensus       259 ~~~~~~~~~~~l--~~~~~~~~p~~~~~~~~~~~~~g~~~~m~~~-v~-~~v~~~~~~i~~~L~~~~~~~~~gl~  329 (413)
T 3v7i_A          259 TGRPRPESVLRL--DAAWHHTLPGTRDLHRLETRADGTHFVMDRR-GP-RAVQETVTAMWEWLRVRYEDDPSSWH  329 (413)
T ss_dssp             ESSCCTTEEEEE--EEEEEEECTTCTTSEEEEEETTEEEEEECTT-HH-HHHHHHHHHHHHHHHHHTSSSCTTCC
T ss_pred             EecCCCCCCEEE--EccccEEeCCCccccCccccCCceEEEECcH-HH-HHHHHHHHHHHHHHhhccccccCCCc
Confidence            87642 011222  22221111211     111111  1136666 33 467779999999999      78876

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=99.96  E-value=5.1e-29  Score=247.28  Aligned_cols=237  Identities=13%  Similarity=0.068  Sum_probs=177.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHH---cCCChHH---------Hh-hccceeeeecCCCC-------------------
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKY---RKLDTVR---------FE-NLLMQQKSVSLPYE-------------------   49 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~---~~~~~~~---------~~-~~Gi~~r~~~~~~e-------------------   49 (245)
                      +++.|.|+|+|+|+.+++|+++.+.   .+.++.|         +. ++||++|+++.+++                   
T Consensus       602 ~~~~I~g~g~~~P~~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~sGI~~r~~~~~~~~~~~~~~~~~~~~~~~~~r  681 (979)
T 3tsy_A          602 GPATILAIGTATPDHCVYQSDYADYYFKVTKSEHMTALKKKFNRICDKSMIKKRYIHLTEEMLEEHPNIGAYMAPSLNIR  681 (979)
T ss_dssp             SCEEEEEEEEECCSCEEEHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCCCEEECSCCHHHHHHCHHHHSSSSCCHHHH
T ss_pred             CCceeecccCCCCCCccCHHHHHHHHHHhccccchHHHHHHHHHHHHhcCcceeeEecChhhhhcCcccccccCCCHHHH
Confidence            4699999999999999999999988   5555544         55 78999999987655                   


Q ss_pred             ------CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cceeeecCcchhHHHHHH
Q psy2407          50 ------DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFELKQACYSCTAGLQ  122 (245)
Q Consensus        50 ------~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~dv~~~C~~~~~aL~  122 (245)
                            +..+|+.+|+++||+++ |++++|||+||++|++ ++..|+.+..|+++||+++. +++++++++|+|++.||.
T Consensus       682 ~~~~~~~~~~la~~Aa~~AL~~a-gl~~~dId~ii~~t~~-~~~~p~~a~~v~~~lGl~~~~~~~~~v~~aCsg~~~Al~  759 (979)
T 3tsy_A          682 QEIITAEVPKLGKEAALKALKEW-GQPKSKITHLVFCTTS-GVEMPGADYKLANLLGLEPSVRRVMLYHQGCYAGGTVLR  759 (979)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH-CSCGGGCCEEEEEESS-CCCSSCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh-CCCHHHCCEEEEEeeC-CCCCCcHHHHHHHHcCCCcccEEEeeeccccHhHHHHHH
Confidence                  37789999999999997 9999999999999855 47889999999999999533 468999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC--CeeEEeecccccccccccc
Q psy2407         123 MAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP--EIFQFDIGSNGYYSFEVMD  200 (245)
Q Consensus       123 ~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~--~i~~~~~~~~g~~~~~~~~  200 (245)
                      .|..+|++|.+  ++||||++|.++......+. +.....+...+|||||+|+||++.+  ++....+..++.......+
T Consensus       760 ~A~~~i~sG~~--~~vLvvg~e~~~~~~~~~~~-~~~~~~~~~~lfGDGA~A~vL~~~~~~~~~~~~~~~~~~~~~~~~~  836 (979)
T 3tsy_A          760 TAKDLAENNAG--ARVLVVCSEITVVTFRGPSE-DALDSLVGQALFGDGSAAVIVGSDPDISIERPLFQLVSAAQTFIPN  836 (979)
T ss_dssp             HHHHHHHTSTT--CEEEEEEEECTTTTCCCCCS-SCHHHHHHHHHBCCEEEEEEEESSCCSSSCCCCEEEEEEEEEECTT
T ss_pred             HHHHHHHhCCC--CEEEEEEEEecchheeCCCc-cCHHHHhhhhhccCceEEEEEecCCCccccCcceEEEeeeeEEecC
Confidence            99999999966  99999999998665432221 0000011235799999999998754  2222222222222222211


Q ss_pred             ccC-----CCCC-CCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         201 TCR-----PIPD-SEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       201 ~~~-----p~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      ...     +... ...+.++..++.+.+.+.+++++.+++.|+++.++.
T Consensus       837 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~al~~agl~~~did  885 (979)
T 3tsy_A          837 SAGAIAGNLREVGLTFHLWPNVPTLISENVEKCLTQAFDPLGISDWNSL  885 (979)
T ss_dssp             CTTSEEEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHGGGTCCCGGGS
T ss_pred             chhheEEEEecCceEEEEchHHHHHHHHHHHHHHHHHHhhcCCCCcccc
Confidence            111     1111 113555677888899999999999999999988653

>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A

Probab=99.85  E-value=1.3e-20  Score=165.23  Aligned_cols=207  Identities=14%  Similarity=0.094  Sum_probs=137.1

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      ...|.+.++.++     ..|...-++..-+++. ...+.++.+   +++..+|+.+|+++||+++ |++++|||+||++|
T Consensus        14 ~~~i~~~~~~~g-----~~E~~gpl~~~fd~~~~d~~fG~~t~---e~a~sdLa~~Aa~~AL~~A-Gi~~~DID~II~gt   84 (347)
T 3lma_A           14 PLFVNSSGTAVG-----PKEKEGPLGHLFDKSYDEMHCNQKNW---EMAERKLMEDAVQSALSKQ-NLKKEDIDIFLAGD   84 (347)
T ss_dssp             CCEEEEEEEEEC-----HHHHHSTTGGGSSEECSSTTTTSSSH---HHHHHHHHHHHHHHHHHTT-TCCGGGCSEEEEEE
T ss_pred             CCEEEEEeeeeC-----chhhcCCchhhchhhhcccccCCcCc---cHHHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEe
Confidence            367788877765     4444433322222222 122223332   5678999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcc-c-c--c
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDK-N-E--L  157 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~-~-~--~  157 (245)
                      .++ +..  .+..+++.||+    ++||++++|+|+++||.+|..+|++|.+  ++|||+++|++|....... + +  .
T Consensus        85 ~t~-q~~--~A~~va~~Lgi----pafdV~~ACsg~~~AL~~Aa~~I~sG~~--~~VLVVGaE~~S~aerq~r~p~e~g~  155 (347)
T 3lma_A           85 LLN-QNV--TANYVARHLKI----PFLCLFGACSTSMESIAISSALIDGGFA--KRALAATSSHNATAERQFRYPTEYGG  155 (347)
T ss_dssp             SSS-SST--THHHHHHHHCC----CEEEBCCSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTTCCC--------
T ss_pred             CCC-chh--HHHHHHHHhCC----CEEEecChhHHHHHHHHHHHHHHhcCCC--CEEEEEEeccccchhhhccCcchhcc
Confidence            988 433  68899999965    5899999999999999999999999977  9999999999987632210 0 0  0


Q ss_pred             ccccccccccccceeEEEEecCCC---CeeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHH
Q psy2407         158 TMEWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKR  234 (245)
Q Consensus       158 ~~~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  234 (245)
                      ..++.  ..+++|||+|+||++.+   +|....   -|...    |+-..  +...|.     ..-..+..+++++.+++
T Consensus       156 q~p~t--a~~t~dGAGA~VL~~~g~~p~I~~~t---~Gkvv----d~g~~--d~~nmg-----~amaPaA~~ti~~~l~d  219 (347)
T 3lma_A          156 QKPGT--ATSTVTGSGAVVLSQQPGGIKITSAT---VGRVI----DLGIT--DSQDMG-----SAMAPAAADTIKQHLED  219 (347)
T ss_dssp             ----------CCCEEEEEEEESSCCSEEEEEEE---CCCCB----CCSCC--CTTCHH-----HHHHHHHHHHHHHHHHH
T ss_pred             cCCch--hcEEccceeEEEEEecCCCCceeeee---eeeee----ccCCC--CCCCcc-----ccchHHHHHHHHHHHHH
Confidence            01211  34688999999999753   233322   23322    21110  110121     11134555778888999


Q ss_pred             hcchhhhhc
Q psy2407         235 VQYKIIVYN  243 (245)
Q Consensus       235 ~~~~~~~~~  243 (245)
                      .||++.+|.
T Consensus       220 ~g~~~~d~D  228 (347)
T 3lma_A          220 LGRTPDDYD  228 (347)
T ss_dssp             HTCCGGGCS
T ss_pred             hCCCHHHcC
Confidence            999999885

>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile}

Probab=99.77  E-value=3.7e-18  Score=153.95  Aligned_cols=110  Identities=15%  Similarity=0.127  Sum_probs=101.8

Q ss_pred             hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          36 NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        36 ~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                      ++++.+|+...++++..+|+.+|+++||+++ |++++|||.|++++.++++..|.++..++..||+++++++++++.+|+
T Consensus        16 rT~~~~~~~~~~~~~~~~L~~~A~~~AL~~a-gl~~~dId~vi~g~~~~~~~~~~~a~~v~~~lGl~~~~p~~~v~~aCs   94 (396)
T 4dd5_A           16 RTAVGSFGGAFKSVSAVELGVTAAKEAIKRA-NITPDMIDESLLGGVLTAGLGQNIARQIALGAGIPVEKPAMTINIVCG   94 (396)
T ss_dssp             ECCCEETTSTTTTSCHHHHHHHHHHHHHHHT-TCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSCEEEECCGGG
T ss_pred             cCCeeecCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeecCCCCCchHHHHHHHHcCCCCCceEEEeccccH
Confidence            4677777766778999999999999999997 999999999999999988888999999999999966799999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++.+|..|..+|++|.+  +++||+++|.++.
T Consensus        95 s~~~al~~A~~~I~~G~~--~~vLv~g~e~~s~  125 (396)
T 4dd5_A           95 SGLRSVSMASQLIALGDA--DIMLVGGAENMSM  125 (396)
T ss_dssp             HHHHHHHHHHHHHHHTSC--SEEEEEEEEESTT
T ss_pred             HHHHHHHHHHHHHhcCCC--CEEEEEEEecccC
Confidence            999999999999999977  9999999999875

>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile}

Probab=99.74  E-value=2.3e-17  Score=148.68  Aligned_cols=110  Identities=14%  Similarity=0.141  Sum_probs=100.4

Q ss_pred             hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          36 NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        36 ~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                      ++++.+|+...++++..+|+.+|+++||+++ |++++|||.|++++.+++...|.++..++..||+++++++++++.+|+
T Consensus        14 rT~~g~~~~~~~~~~~~~L~~~a~~~Al~~a-gi~~~~Id~v~~g~~~~~~~~~~~a~~~~~~lGl~~~~p~~~v~~~Cs   92 (395)
T 4e1l_A           14 RTPIGSFGGVFKNTSAVQLGTIAVKEAISRV-GLNLSEIDEVIIGNVLQTGLGQNVARQIAINAGIPNSVPSYTVNKLCG   92 (395)
T ss_dssp             ECCCEETTSTTTTSCHHHHHHHHHHHHHHHT-TCCGGGCCEEEEECCCCSSTTCCHHHHHHHHTTCCTTSCEEEECCGGG
T ss_pred             cCCccccCCCcCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCcchHHHHHHHHcCCCCCceEEEccccch
Confidence            4567666655678999999999999999997 999999999999999887778899999999999966789999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++.+|..|..+|++|.+  +++||+++|+++.
T Consensus        93 s~~~al~~A~~~I~~G~~--~~vlv~g~e~~s~  123 (395)
T 4e1l_A           93 SGLKSVQLAAQSITSGEN--DVVIAGGTENMSQ  123 (395)
T ss_dssp             HHHHHHHHHHHHHHTTSC--SEEEEEEEEETTT
T ss_pred             HHHHHHHHHHHHHhCCCC--CEEEEEEEecccC
Confidence            999999999999999977  9999999999875

>3o04_A LMO2201 protein, beta-keto-acyl carrier protein synthase II; csgid, structural genomics; 1.85A {Listeria monocytogenes}

Probab=99.74  E-value=3.1e-16  Score=142.00  Aligned_cols=170  Identities=11%  Similarity=0.008  Sum_probs=116.8

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-----cceeeee-----cCCCCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-----LMQQKSV-----SLPYEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-----Gi~~r~~-----~~~~e~~~~la~~Aa   59 (245)
                      +.|.|.|+|.++|.. .+.+++.+.+  |.+         .+.+. +.     ++..+.+     +..-.....|+.+|+
T Consensus         4 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~Aa   82 (413)
T 3o04_A            4 RRVVVTGIGAVTPIG-NDAETSWENAKKGVNGVAKMTRLNPDDFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASA   82 (413)
T ss_dssp             CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCGGGSSCCEEECCSSCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccccccccCCCChhhccCHHHHhhCCHHHHHHHHHH
Confidence            469999999999997 5677766543  111         11110 00     0000100     001123567999999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEecc-----------------CCCCCC---------cHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSES-----------------GIDFGK---------SMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~-----------------~~~~~p---------~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||    .|++++.+                 ++...|         ..+..|+..||++ . ++++
T Consensus        83 ~~AL~dA-Gl~~~~id~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~-g-p~~~  159 (413)
T 3o04_A           83 EMAVQDS-GLVIDDSNANRVGVWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAK-G-INST  159 (413)
T ss_dssp             HHHHHHH-TCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCTTTSCTTHHHHHSTTHHHHHHHHHHTCC-S-CEEC
T ss_pred             HHHHHHc-CCChhHcCccceEEEEccccCcHHHHHHHHHHHHhcCCCccCchhhhcccccHHHHHHHHHhCCC-C-ccee
Confidence            9999997 99999999    99998864                 222223         2388999999994 3 8999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc---------------cccCccccccccccc--cccccccee
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF---------------FVTEDKNELTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~---------------~~~~~~~~~~~~~~~--~~~~~GDGA  172 (245)
                      ++.+|+|++.||..|..+|++|.+  +.+||+++|.+..               ..++..  +..++..  ...++||||
T Consensus       160 v~~aCss~~~Al~~A~~~I~~G~~--d~~lvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~--~~~pfd~~~~g~~~gdGA  235 (413)
T 3o04_A          160 TVTACATATNSIGDAFKVIERGDA--DAMITGGAEAPITKMSLAGFTANKALSLNPDPET--ACRPFDKDRDGFIIGEGA  235 (413)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTT--SCCTTBTTCCSBCBBCEE
T ss_pred             ecchhHHHHHHHHHHHHHHHcCCC--CEEEEeEEcccCCHHHHHHHHhcccccCCCCCCC--CcCCCcCCCCCceEeccE
Confidence            999999999999999999999977  9999999998321               111111  1111111  245799999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +|+||++
T Consensus       236 aavvL~~  242 (413)
T 3o04_A          236 GIVILEE  242 (413)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEee
Confidence            9999985

>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis}

Probab=99.73  E-value=2.6e-17  Score=148.27  Aligned_cols=110  Identities=11%  Similarity=0.057  Sum_probs=100.4

Q ss_pred             hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          36 NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        36 ~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                      ++++.+|+...++++..+|+.+|+++||+++ |++++|||.+++++.+++...|.++..++..||++.++++++++.+|+
T Consensus        14 rT~~~~~~~~~~~~~~~~L~~~A~~~Al~~a-gl~~~~Id~v~~g~~~~~~~~~~~a~~i~~~lGl~~~~p~~~v~~aCs   92 (394)
T 3ss6_A           14 RSPIGTFGGALKNVTPVELAVPVLQEAVKRG-GVEPHEVDEVILGHCIQRTDEANTARTAALAAGFPDTVTGYTIQRQCS   92 (394)
T ss_dssp             ECCCEETTSTTTTCCHHHHHHHHHHHHHHHT-TCCGGGCCEEEEECSSCCGGGCSHHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             cCCccccCCCCCCCCHHHHHHHHHHHHHHHc-CCCHhHCCEEEEEEccCCCccchHHHHHHHHcCCCCCceEEEecCcch
Confidence            4567666666678999999999999999997 999999999999999887777899999999999965799999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++.+|..|..+|++|.+  +++||+++|.++.
T Consensus        93 s~~~al~~A~~~I~~G~~--~~vlv~G~e~~s~  123 (394)
T 3ss6_A           93 SGMQAIMSAAMQIQLGVS--EVVVAGGVEAMSS  123 (394)
T ss_dssp             HHHHHHHHHHHHHHHTSC--SEEEEEEEEECTT
T ss_pred             HHHHHHHHHHHHHhCCCC--CEEEEEEEhhccC
Confidence            999999999999999977  9999999999875

>2iik_A 3-ketoacyl-COA thiolase, peroxisomal; fatty acid metabolism, structural genomics, structural genom consortium, SGC, transferase; 2.55A {Homo sapiens}

Probab=99.70  E-value=2.1e-17  Score=149.99  Aligned_cols=133  Identities=8%  Similarity=0.054  Sum_probs=99.8

Q ss_pred             cCCceecHHHHHHHcCC---ChHHHh---hccceeee-ecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCC
Q psy2407          13 GGSVFIDVIELAKYRKL---DTVRFE---NLLMQQKS-VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGI   85 (245)
Q Consensus        13 lP~~~v~~~~~~~~~~~---~~~~~~---~~Gi~~r~-~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~   85 (245)
                      =|+++++|+++.+..+.   ++.+|.   ++++.+|+ ...++++..+|+.+|+++||+++ |+++++||.|++++.+++
T Consensus        10 ~P~~~~~n~~~~~~~~~~~~~~v~Ivg~~rt~~g~~~~~~~~~~~~~~L~~~Aa~~AL~dA-gl~~~~id~v~~g~~~~~   88 (418)
T 2iik_A           10 GVDLGTENLYFQSMAPQASAADVVVVHGRRTAICRAGRGGFKDTTPDELLSAVMTAVLKDV-NLRPEQLGDICVGNVLQP   88 (418)
T ss_dssp             -----------------CCTTCEEEEEEEECCCEETTTSTTTTCCHHHHHHHHHHHHHHHH-TCCGGGCCCEEEECSSSB
T ss_pred             CCCccccHHHHHHHhhhccCCCeEEEeeeecCceecCCCCCCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCc
Confidence            49999999999987653   444443   45666542 34578999999999999999997 999999999999998876


Q ss_pred             CCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407          86 DFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus        86 ~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +..|..+..++..||++.+.++++++.+|+|++.+|..|.++|++|.+  +.+||+++|.++.
T Consensus        89 ~~~~~~a~~~a~~lGl~~~~p~~~v~~aCss~~~Al~~A~~~I~~G~~--d~vLv~G~e~~s~  149 (418)
T 2iik_A           89 GAGAIMARIAQFLSDIPETVPLSTVNRQCSSGLQAVASIAGGIRNGSY--DIGMACGVESMSL  149 (418)
T ss_dssp             GGGHHHHHHHHHHTTCCTTSCEEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEETTT
T ss_pred             cccccHHHHHHHHcCCCCCceEEEeCCCCHHHHHHHHHHHHHHHCCCC--CEEEEeccccCcc
Confidence            666778888999999954789999999999999999999999999977  9999999999875

>1e5m_A KAS II, beta ketoacyl acyl carrier protein synthase II; condensing enzyme, biosynthetic role, carbon-carbon bond formation; 1.54A {Synechocystis SP} SCOP: c.95.1.1 c.95.1.1

Probab=99.67  E-value=9.2e-15  Score=132.48  Aligned_cols=173  Identities=11%  Similarity=0.043  Sum_probs=116.5

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCCh----HHHhhccceeeeec-CCC---------------CCHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLDT----VRFENLLMQQKSVS-LPY---------------EDPVSFAINA   58 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~~----~~~~~~Gi~~r~~~-~~~---------------e~~~~la~~A   58 (245)
                      |+.|.|.|+|...|... +.+++.+.+  |.+.    .++...++..+... .++               ....+|+.+|
T Consensus         6 m~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~a   84 (416)
T 1e5m_A            6 KKRVVVTGLGAITPIGN-TLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCA   84 (416)
T ss_dssp             CCCEEEEEEEEEBTTBS-SHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHH
T ss_pred             CCCEEEEeeeEECCCCC-CHHHHHHHHHcCCCeEeeCCccccccCccceeEEeCCCCccccCCHHHHHhcCHHHHHHHHH
Confidence            34699999999999984 566665432  1110    00000011111000 001               1245899999


Q ss_pred             HHHHHHhcCCCCcCCcC----EEEEEeccCCC-----------------C---------CCcHHHHHHHHcCCCCCccee
Q psy2407          59 AAPLIDNLSNIDKNSIE----LIITCSESGID-----------------F---------GKSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        59 a~~aL~~a~g~~~~dId----~li~~t~~~~~-----------------~---------~p~~a~~l~~~LGl~~~~~~~  108 (245)
                      +++||+++ |+++++||    .|++++.+++.                 .         ....+.+|+..||++  .+++
T Consensus        85 a~~Al~dA-g~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~--gp~~  161 (416)
T 1e5m_A           85 SQQAINDA-KLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAK--GPNN  161 (416)
T ss_dssp             HHHHHHHH-TCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCEE
T ss_pred             HHHHHHHc-CCChhhcCccceEEEEeecCCcHHHHHHHHHHHHhcCcccCChhHhhhhhhHHHHHHHHHHhCCC--Ccee
Confidence            99999997 99999999    78888776531                 1         124689999999994  4899


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------ccC--cccc-cccccc--ccccccccee
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VTE--DKNE-LTMEWA--FFEPSGGAGA  172 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~~--~~~~-~~~~~~--~~~~~~GDGA  172 (245)
                      +++.+|+|++.||..|..+|++|.+  +.+||+++|.+ +..          +..  .+++ +..++.  ...+++||||
T Consensus       162 ~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G~v~geGa  239 (416)
T 1e5m_A          162 CTVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGS  239 (416)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEE
T ss_pred             CccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHHcCCccCCCCCCccccccCccCCCCceeeeeE
Confidence            9999999999999999999999977  99999999973 432          110  0000 111111  1246799999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +|+||++
T Consensus       240 aavvL~~  246 (416)
T 1e5m_A          240 GILILEE  246 (416)
T ss_dssp             EEEEEEE
T ss_pred             EEEEECc
Confidence            9999975

>1ox0_A Beta ketoacyl-acyl carrier protein synthase; transferase; 1.30A {Streptococcus pneumoniae} SCOP: c.95.1.1 c.95.1.1 PDB: 1oxh_A 2alm_A 2rjt_A

Probab=99.66  E-value=7.5e-15  Score=133.62  Aligned_cols=172  Identities=15%  Similarity=0.083  Sum_probs=115.9

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHhhccceeee------------ec----CCCCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFENLLMQQKS------------VS----LPYEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~~~Gi~~r~------------~~----~~~e~~~~la~~Aa   59 (245)
                      +.|.|.|+|..+|.. .+.+++.+.+  |.+   + .++...++..+.            +.    ..-....+|+.+|+
T Consensus        23 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa  101 (430)
T 1ox0_A           23 NRVVVTGYGVTSPIG-NTPEEFWNSLATGKIGIGGITKFDHSDFDVHNAAEIQDFPFDKYFVKKDTNRFDNYSLYALYAA  101 (430)
T ss_dssp             CCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCSSCCHHHHCCGGGGGTCCHHHHHHHHHH
T ss_pred             CCEEEEEEEEECCCc-CCHHHHHHHHHcCCCeeeeCCcccccCCccceeeeccCCChhhcCCHHHHHhcCHHHHHHHHHH
Confidence            359999999999997 4666665432  211   0 000000110010            00    00123468999999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC---------------------CCC-----cHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID---------------------FGK-----SMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~---------------------~~p-----~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||    .|++++.+++.                     ..|     ..+.+|+..||++  .++++
T Consensus       102 ~~AL~dA-G~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~--Gp~~~  178 (430)
T 1ox0_A          102 QEAVNHA-NLDVEALNRDRFGVIVASGIGGIKEIEDQVLRLHEKGPKRVKPMTLPKALPNMASGNVAMRFGAN--GVCKS  178 (430)
T ss_dssp             HHHHHHT-TCCTTTSCGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCEEC
T ss_pred             HHHHHHc-CCChhhcCccceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhccchhHHHHHHHHHhcCC--CceEe
Confidence            9999997 99999999    58888766531                     111     4688999999995  38999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCc-ccc-cccccc--cccccccceeEE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTED-KNE-LTMEWA--FFEPSGGAGAVA  174 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~-~~~-~~~~~~--~~~~~~GDGAaA  174 (245)
                      ++++|+|++.||..|..+|++|.+  +.+||+++|.+...           +... +++ +..++.  ...+++||||+|
T Consensus       179 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pFd~~~~g~~~geGAaa  256 (430)
T 1ox0_A          179 INTACSSSNDAIGDAFRSIKFGFQ--DVMLVGGTEASITPFAIAGFQALTALSTTEDPTRASIPFDKDRNGFVMGEGSGM  256 (430)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSSTTSSSCTTBTTCCSBCBCCEEEE
T ss_pred             ecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhCCCccCCCCCCCCCCCCCCCCCCccccceEEE
Confidence            999999999999999999999977  99999999985322           1100 000 111111  124679999999


Q ss_pred             EEecC
Q psy2407         175 MLISD  179 (245)
Q Consensus       175 ~ll~~  179 (245)
                      +||++
T Consensus       257 vvL~~  261 (430)
T 1ox0_A          257 LVLES  261 (430)
T ss_dssp             EEEEE
T ss_pred             EEECc
Confidence            99975

>2gqd_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; duplicated babababb fold, transferase; 2.30A {Staphylococcus aureus}

Probab=99.66  E-value=1e-14  Score=132.96  Aligned_cols=170  Identities=15%  Similarity=0.059  Sum_probs=117.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-c-ceee---eecCC-----CCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-L-MQQK---SVSLP-----YEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-G-i~~r---~~~~~-----~e~~~~la~~Aa   59 (245)
                      +.|.|.|+|...|.. .+.+++.+.+  |.+         .+.+. +. | +..+   ....+     -....+|+.+|+
T Consensus        28 ~~vaI~G~g~~~P~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~i~~fd~~~~~~~~~~~~~d~~~~l~l~aa  106 (437)
T 2gqd_A           28 KRVVITGMGALSPIG-NDVKTTWENALKGVNGIDKITRIDTEPYSVHLAGELKNFNIEDHIDKKEARRMDRFTQYAIVAA  106 (437)
T ss_dssp             CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCSSCCGGGTSCSTTTTTSCHHHHHHHHHH
T ss_pred             CCEEEEEeeEECCCC-CCHHHHHHHHHcCCCceeeCCccccccCccceeEEeCCCChhcCCCHHHHHhcCHHHHHHHHHH
Confidence            469999999999998 4666665432  211         00010 00 1 1000   00011     123578999999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC-----------------C---------CCcHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID-----------------F---------GKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~-----------------~---------~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||    .|++++.+++.                 .         .+..+.+|+..||++ . ++++
T Consensus       107 ~~AL~dA-Gl~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~-g-p~~~  183 (437)
T 2gqd_A          107 REAVKDA-QLDINENTADRIGVWIGSGIGGMETFEIAHKQLMDKGPRRVSPFFVPMLIPDMATGQVSIDLGAK-G-PNGA  183 (437)
T ss_dssp             HHHHHHH-TCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC-S-SEEC
T ss_pred             HHHHHHc-CCCccccCCcceEEEEeecCCcHHHHHHHHHHHHhcCcccCChHHhhhcchhHHHHHHHHHhCCC-C-ceEE
Confidence            9999997 99999999    99999876531                 1         125788999999994 4 8999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c----Ccccccccccc--ccccccccee
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T----EDKNELTMEWA--FFEPSGGAGA  172 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~----~~~~~~~~~~~--~~~~~~GDGA  172 (245)
                      ++.+|+|++.||..|..+|++|.+  +.+||+++|.+....           .    ++.  +..++.  ...+++||||
T Consensus       184 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~p~~--~~~pfd~~~~G~v~geGa  259 (437)
T 2gqd_A          184 TVTACATGTNSIGEAFKIVQRGDA--DAMITGGTEAPITHMAIAGFSASRALSTNDDIET--ACRPFQEGRDGFVMGEGA  259 (437)
T ss_dssp             BCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCCTTT--SSCTTCTTCCSBCBBCEE
T ss_pred             ecCCccHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCccCCCCCcc--ccCCCCCCCCCceeeceE
Confidence            999999999999999999999977  999999999742211           0    000  011111  1246799999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +|+||++
T Consensus       260 aavvL~~  266 (437)
T 2gqd_A          260 GILVIES  266 (437)
T ss_dssp             EEEEEEE
T ss_pred             EEEEECc
Confidence            9999975

>4ewg_A Beta-ketoacyl synthase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease, transferase; 2.25A {Burkholderia phymatum}

Probab=99.64  E-value=7.6e-15  Score=132.84  Aligned_cols=215  Identities=13%  Similarity=0.079  Sum_probs=139.2

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHHhhccceeeeec-----C-----------CCCCHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRFENLLMQQKSVS-----L-----------PYEDPVSFAIN   57 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~~~~Gi~~r~~~-----~-----------~~e~~~~la~~   57 (245)
                      |+.|.|.|+|...|.. .+.+++.+.+  |.+     +.+-...+...+...     +           .-.....|+.+
T Consensus         5 m~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~   83 (412)
T 4ewg_A            5 MKRVVITGMGGVTALG-SRWDEIEAALKAGRNAVRRMPDWDYFESLHTRLAAPLPGFAQPADWPRKKTRSMGRVSMYAVR   83 (412)
T ss_dssp             CCCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCCEECGGGGGSSSCCCCEEBCCSCCCCCTTSCHHHHTTCCHHHHHHHH
T ss_pred             CCEEEEEeeEEECCCc-CCHHHHHHHHHcCCCceeeCCccccccCCccceeeecCCCChhhhCCHHHHhhCCHHHHHHHH
Confidence            6789999999999996 4667665543  211     111000011111100     0           11235679999


Q ss_pred             HHHHHHHhcCCC-CcCCcC----EEEEEeccCC--------------------------CCCCcHHHHHHHHcCCCCCcc
Q psy2407          58 AAAPLIDNLSNI-DKNSIE----LIITCSESGI--------------------------DFGKSMSTYIHHYLGLNRNCR  106 (245)
Q Consensus        58 Aa~~aL~~a~g~-~~~dId----~li~~t~~~~--------------------------~~~p~~a~~l~~~LGl~~~~~  106 (245)
                      |+++||+++ |+ ++++||    .+++++.++.                          ...+..+..|+..||++ . +
T Consensus        84 aa~~Al~dA-Gl~~~~~i~~~~~gv~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~-g-p  160 (412)
T 4ewg_A           84 ASELALADA-GFAGDESISDGRMGVAYGSSSGSVEPIRAFGTMLESGSMTDVTSNSYVQMMPHTTAVNVSLFWDLK-G-R  160 (412)
T ss_dssp             HHHHHHHHH-TCTTCGGGGTTTEEEEEECSCCCHHHHHHHHHHHHHCCCTTCCTTHHHHHSTTHHHHHHHHHTTCC-S-C
T ss_pred             HHHHHHHhc-CCCCccccCccceEEEEeccCCchHHHHHHHHHHHhcCcccCChhhhhhhcccHHHHHHHHHhCCC-C-C
Confidence            999999997 99 778888    7888776531                          12346788999999994 3 8


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc----------C--ccc-cccccccc--ccccccce
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT----------E--DKN-ELTMEWAF--FEPSGGAG  171 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~----------~--~~~-~~~~~~~~--~~~~~GDG  171 (245)
                      +++|+.+|+|++.||..|.++|++|.+  +.+||+++|.++....          .  .++ .+..++..  ..+++|||
T Consensus       161 ~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~s~~~~~~~~~~~~l~~~~~~p~~~~rpfd~~~~G~~~geG  238 (412)
T 4ewg_A          161 IVPTSSACASGSQAIGYAYENIAMGKQ--TLMLAGGAEELSGPAVAVFDTLYATSTRNDEPHLTPRPFDAKRDGLVVGEG  238 (412)
T ss_dssp             EEECCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHTTTCBCCCTTCGGGCCCTTBTTCCCBCBBCE
T ss_pred             cccccchhHHHHHHHHHHHHHHHcCCC--CEEEEeccccCCHHHHHHHHHhhccccCCCCCCCCCCCCCCCCCCCceECe
Confidence            999999999999999999999999977  9999999998764321          0  000 01111211  13579999


Q ss_pred             eEEEEecCC-------CC----eeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhh
Q psy2407         172 AVAMLISDK-------PE----IFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKII  240 (245)
Q Consensus       172 AaA~ll~~~-------~~----i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  240 (245)
                      |+|+||++.       ..    |.++...+||..      ...|.               .+...++.++.+++.|+++.
T Consensus       239 AaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~------~~~p~---------------~~~~~~ai~~Al~~Agl~~~  297 (412)
T 4ewg_A          239 AATLVLEEYEHAKARGATIHAEIVGFGCNSDGAH------MTQPT---------------ASTMARAMQLALEDAKLDAN  297 (412)
T ss_dssp             EEEEEEEEHHHHHHTTCCCCEEEEEEEEEECSSC------SSSCC---------------HHHHHHHHHHHHHHTTCCGG
T ss_pred             EEEEEEccHHHHhhCCCcEEEEEEEEEEcCCCCC------CCCCC---------------HHHHHHHHHHHHHHcCCCHH
Confidence            999999852       12    333333333321      11221               23456777778888888877


Q ss_pred             hh
Q psy2407         241 VY  242 (245)
Q Consensus       241 ~~  242 (245)
                      ++
T Consensus       298 dI  299 (412)
T 4ewg_A          298 AI  299 (412)
T ss_dssp             GE
T ss_pred             HC
Confidence            53

>1tqy_A Beta-ketoacyl synthase/acyl transferase; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1

Probab=99.63  E-value=8.2e-15  Score=133.08  Aligned_cols=173  Identities=12%  Similarity=0.089  Sum_probs=115.1

Q ss_pred             Cc-eeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc----cceeeee-cC-----CCCCHHHHHHH
Q psy2407           1 MI-KVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL----LMQQKSV-SL-----PYEDPVSFAIN   57 (245)
Q Consensus         1 m~-~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~----Gi~~r~~-~~-----~~e~~~~la~~   57 (245)
                      |+ .|.|.|+|..+|... +.+++.+.+  |.+         .+.+. +.    ++..+.+ ..     .-....+|+.+
T Consensus         1 M~~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~fd~~~~~i~~~~~~~~d~~~~l~l~   79 (424)
T 1tqy_A            1 MKRRVVITGVGVRAPGGN-GTRQFWELLTSGRTATRRISFFDPSPYRSQVAAEADFDPVAEGFGPRELDRMDRASQFAVA   79 (424)
T ss_dssp             --CCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCHHHHTCCHHHHHHSCHHHHHHHH
T ss_pred             CCCCEEEEeeEEECCCCC-CHHHHHHHHHcCCCceeeCCCcccccCCcceeEEeccCHhhcCCCHHHHHhcCHHHHHHHH
Confidence            54 799999999999874 667766543  211         00000 00    0000000 00     01235689999


Q ss_pred             HHHHHHHhcCCCCcCCcC----EEEEEeccCCC---------------------------CCCcH-HH----HHHHHcCC
Q psy2407          58 AAAPLIDNLSNIDKNSIE----LIITCSESGID---------------------------FGKSM-ST----YIHHYLGL  101 (245)
Q Consensus        58 Aa~~aL~~a~g~~~~dId----~li~~t~~~~~---------------------------~~p~~-a~----~l~~~LGl  101 (245)
                      |+++||+++ |+++++||    .|++++.++++                           ..|+. +.    +|+..||+
T Consensus        80 aa~~AL~dA-G~~~~~i~~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ia~~lgl  158 (424)
T 1tqy_A           80 CAREAFAAS-GLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPAEVAWAVGA  158 (424)
T ss_dssp             HHHHHHHHH-TCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHHHHHHHHTC
T ss_pred             HHHHHHHHC-CCCchhcCCCceEEEEEeCCccHHHHHHHHHHHhhhccCccccChhhhcccccccccchhHhHHHHhcCC
Confidence            999999997 99999999    68888776532                           11222 34    99999999


Q ss_pred             CCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------ccC--cccc-cccccc--ccc
Q psy2407         102 NRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VTE--DKNE-LTMEWA--FFE  165 (245)
Q Consensus       102 ~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~~--~~~~-~~~~~~--~~~  165 (245)
                      + . ++++++.+|+|++.||..|..+|++|.+  +.+||+++|.+ +..          +..  .+++ +..++.  ...
T Consensus       159 ~-g-p~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~rpfd~~~~G  234 (424)
T 1tqy_A          159 E-G-PVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTPITPIVVACFDAIRATTARNDDPEHASRPFDGTRDG  234 (424)
T ss_dssp             C-S-CEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCCSCGGGCCCTTBTTCCC
T ss_pred             C-C-ceEeecCcccHHHHHHHHHHHHHHCCCC--CEEEEeeecccCCHHHHHHHHhhccccCCCCCCCCCccCCCCCCCc
Confidence            5 3 8999999999999999999999999977  99999999985 221          110  0000 111111  124


Q ss_pred             ccccceeEEEEecC
Q psy2407         166 PSGGAGAVAMLISD  179 (245)
Q Consensus       166 ~~~GDGAaA~ll~~  179 (245)
                      +++||||+|+||++
T Consensus       235 ~v~geGaaavvL~~  248 (424)
T 1tqy_A          235 FVLAEGAAMFVLED  248 (424)
T ss_dssp             BCEECEEEEEEEEE
T ss_pred             eeeecceeEEEecc
Confidence            67999999999975

>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium}

Probab=99.62  E-value=1.4e-15  Score=137.47  Aligned_cols=99  Identities=15%  Similarity=0.109  Sum_probs=83.1

Q ss_pred             CCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ++++..+|+.+|+++||++ + |++++|||.+++++.+++.. .|+++..++..||++..+++++|+.+|+|++.+|..|
T Consensus        28 ~~~~~~~L~~~A~~~AL~~~A-Gl~~~dId~vi~g~~~~~~~~~~~~a~~va~~lGlp~~~pa~~v~~~Css~~~Al~~A  106 (407)
T 3svk_A           28 TEVKPLNLVVGLVDELRRRYP-DLDETLISDMILGVVSPVGDQGGDIARTAVLAAGLPETTGGVQLNRFCASGLEAVNTA  106 (407)
T ss_dssp             TTSCHHHHHHHHHHHHHHHST-TCCGGGEEEEEEECC--------CHHHHHHHHTTCCTTCEEEEEC---CBSCCHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhhhc-CcCHHHCCEEEEEecCccccccCcHHHHHHHHcCCCCCCceEEecCcChhHHHHHHHH
Confidence            5789999999999999999 9 99999999999999887654 6789999999999966799999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +.+||+++|+++.
T Consensus       107 ~~~I~sG~~--d~vLv~G~e~~s~  128 (407)
T 3svk_A          107 AQKVRSGWD--DLVLAGGVESMSR  128 (407)
T ss_dssp             HHHHHHTSC--CEEEEEEEECC--
T ss_pred             HHHHHcCCC--CEEEEEEEccccc
Confidence            999999977  9999999999875

>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1

Probab=99.61  E-value=4.2e-14  Score=127.76  Aligned_cols=173  Identities=13%  Similarity=0.080  Sum_probs=116.7

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-c---ceeeee-----cCCCCCHHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-L---MQQKSV-----SLPYEDPVSFAINAA   59 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-G---i~~r~~-----~~~~e~~~~la~~Aa   59 (245)
                      |+.|.|.|+|...|.-. +.+++.+.+  |.+         ...+. +. |   .....+     ...-....+|+.+|+
T Consensus         1 M~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~l~~~aa   79 (408)
T 1j3n_A            1 MRRVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAA   79 (408)
T ss_dssp             CCCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CCCEEEEEeEEECCCCC-CHHHHHHHHHcCCCeeeeccccCcccCccceEEEEccChhhcCCHHHHHhcCHHHHHHHHHH
Confidence            77899999999999874 666665432  211         00000 00 1   000000     001123578999999


Q ss_pred             HHHHHhcCCCCcCCcCE----EEEEeccCCCC-------------------------CC-cHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIEL----IITCSESGIDF-------------------------GK-SMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId~----li~~t~~~~~~-------------------------~p-~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||.    +++++.++++.                         .| ..+.+|+..||++ . ++++
T Consensus        80 ~~AL~dA-Gl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~-g-p~~~  156 (408)
T 1j3n_A           80 QLALEDA-GLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFT-G-PSST  156 (408)
T ss_dssp             HHHHHHH-TCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC-S-CBCC
T ss_pred             HHHHHHc-CCCccccCCCceEEEEEecCCcHHHHHHHHHHHHhcCcccCChhhhhhhhhhHHHHHHHHHhCCC-C-ceeC
Confidence            9999997 999999994    67777654321                         12 4688999999994 4 8999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcc--cc-cccccc--cccccccceeE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDK--NE-LTMEWA--FFEPSGGAGAV  173 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~--~~-~~~~~~--~~~~~~GDGAa  173 (245)
                      ++.+|+|++.||..|.++|++|.+  +.+||+++|.....           +...+  ++ +..++.  ....++||||+
T Consensus       157 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~p~~~~~pfd~~~dg~v~geGaa  234 (408)
T 1j3n_A          157 VVTACATGADALGSALRMIQLGEA--DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAG  234 (408)
T ss_dssp             BCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEE
T ss_pred             ccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhcccccCCCCCCCcCcccCcCCCCceEEeeeEE
Confidence            999999999999999999999977  99999999974221           11000  00 011111  12467999999


Q ss_pred             EEEecC
Q psy2407         174 AMLISD  179 (245)
Q Consensus       174 A~ll~~  179 (245)
                      |+||++
T Consensus       235 avvL~~  240 (408)
T 1j3n_A          235 VLVLEA  240 (408)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999975

>4ddo_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; ssgcid, struct genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia vietnamiensis} PDB: 4f32_A*

Probab=99.61  E-value=3.8e-14  Score=129.75  Aligned_cols=172  Identities=11%  Similarity=0.018  Sum_probs=117.4

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHH-h----hc-c-ce-----------eeee-----cCCCCCH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRF-E----NL-L-MQ-----------QKSV-----SLPYEDP   51 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~-~----~~-G-i~-----------~r~~-----~~~~e~~   51 (245)
                      +.|.|.|+|...|.. .+.+++.+.+  |.+     +.+- .    +. | +.           .+.+     +..-...
T Consensus        24 ~~v~ItG~g~~~P~g-~~~~~~w~~l~~g~s~i~~~~~~~~~~~~~~~~g~v~~~~~~~~~~fd~~~~i~~~~~~~~d~~  102 (451)
T 4ddo_A           24 LRVVVTGIGIVSPLG-CGKELVWQRLIGGGSGLRRLGDDIAGELSAKVGGTVQDVAEDPEGGFDPERSVPHKELRKMDRF  102 (451)
T ss_dssp             CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCHHHHTTSSCCEEECCCCTTTCTTTCCCGGGTSCHHHHTTSCHH
T ss_pred             CCEEEEEeEEECCCC-CCHHHHHHHHHcCCCeeeeCCccccccccCccceEccccccccccccchhhhCCHHHHhhCCHH
Confidence            469999999999987 4667666543  211     1111 0    11 1 10           0000     0112346


Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCc-C----EEEEEeccC--------------------------CCCCCcHHHHHHHHcC
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSI-E----LIITCSESG--------------------------IDFGKSMSTYIHHYLG  100 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dI-d----~li~~t~~~--------------------------~~~~p~~a~~l~~~LG  100 (245)
                      ..|+.+|+++||+++ |+++++| |    .+++++..+                          ....+..+..|+..||
T Consensus       103 ~~L~l~Aa~~AL~dA-Gl~~~~i~d~~~~gv~vgt~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lg  181 (451)
T 4ddo_A          103 IQMAMVAADEALAEA-GWAPEAEQQRERTATVVASGIGGFPGLAEAVRIGETRGVRRLSPFTIPFFLSNLAAGQISIKHR  181 (451)
T ss_dssp             HHHHHHHHHHHHHHH-TCCCCSHHHHTTEEEEEECSSCSHHHHHHHHHHHHHTCGGGCCTTHHHHHCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHc-CCChhhcccccceEEEEeecCCchHHHHHHHHHHHhcCccccCcchhhccccchHHHHHHHHhc
Confidence            789999999999997 9999999 7    677776532                          1223457889999999


Q ss_pred             CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCc--------------cc-ccccccc--c
Q psy2407         101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTED--------------KN-ELTMEWA--F  163 (245)
Q Consensus       101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~--------------~~-~~~~~~~--~  163 (245)
                      +. . ++++++.+|+|++.||..|..+|++|.+  +.+||+++|.++....+.              ++ .+..++.  .
T Consensus       182 l~-G-p~~~v~~aCsS~l~Al~~A~~~I~~G~~--d~vLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~  257 (451)
T 4ddo_A          182 FR-G-PLGCPVTACAASVQAIGDAMRMIRTGEA--DVVLAGGAEAAFDKVSLGGFAAARALSTGFSEEPVRASRPFDRDR  257 (451)
T ss_dssp             CC-S-CEECCCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTC
T ss_pred             CC-C-ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeccccccCHHHHHHHHHHhhhccCCCcCccccccccccCC
Confidence            94 3 8999999999999999999999999977  999999999865321100              00 0111111  1


Q ss_pred             ccccccceeEEEEecC
Q psy2407         164 FEPSGGAGAVAMLISD  179 (245)
Q Consensus       164 ~~~~~GDGAaA~ll~~  179 (245)
                      ..+++||||+|+||++
T Consensus       258 ~g~v~gdGAaavvL~~  273 (451)
T 4ddo_A          258 DGFVMGEGAAMVVVES  273 (451)
T ss_dssp             CSBCBBCEEEEEEEEE
T ss_pred             CCcEEeceEEEEEEee
Confidence            2457999999999975

>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium}

Probab=99.61  E-value=3.8e-15  Score=133.82  Aligned_cols=110  Identities=10%  Similarity=0.072  Sum_probs=98.2

Q ss_pred             ccceeee-ecCCCCCHHHHHHHHHHHHHHhcC-CCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCc
Q psy2407          37 LLMQQKS-VSLPYEDPVSFAINAAAPLIDNLS-NIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQA  113 (245)
Q Consensus        37 ~Gi~~r~-~~~~~e~~~~la~~Aa~~aL~~a~-g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~  113 (245)
                      +++.++. ....+++..+|+.+|+++||++ + |++++|||.|++++.+++.. .|..+..++..+|++..+++++|+.+
T Consensus        12 T~~g~~~~g~~~~~~~~~L~~~a~~~Al~~-a~gi~~~~Id~v~~g~~~~~~~~~~~~a~~~~~~~Gl~~~~p~~~v~~a   90 (387)
T 3goa_A           12 TPMGRSKGGAFRNVRAEDLSAHLMRSLLAR-NPSLTAATLDDIYWGCVQQTLEQGFNIARNAALLAEIPHSVPAVTVNRL   90 (387)
T ss_dssp             CCCEETTTCTTTTSCHHHHHHHHHHHHHHH-CTTSCGGGCCEEEEECSCCSBTTTTTHHHHHHHHTTCCTTSCCEEEECG
T ss_pred             CCceeCCCCccCCCCHHHHHHHHHHHHHHh-ccCCCHHHcCEEEEEcccCCcccccHHHHHHHHHcCCCCCCcEeEecCc
Confidence            4555554 4456789999999999999999 8 99999999999999888765 78899999999999667999999999


Q ss_pred             chhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         114 CYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       114 C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |+|++.+|..|..+|++|.+  +.+||+++|++|..
T Consensus        91 Css~l~Al~~A~~~I~sG~~--d~vLv~G~e~~s~~  124 (387)
T 3goa_A           91 CGSSMQALHDAARMIMTGDA--QVCLVGGVEHMGHV  124 (387)
T ss_dssp             GGHHHHHHHHHHHHHHTTSC--SEEEEEEEECTTTS
T ss_pred             chHHHHHHHHHHHHHhCCCC--CEEEEEEEecCCCC
Confidence            99999999999999999977  99999999998754

>3mqd_A Beta-ketoacyl synthase; ssgcid, ALS collaborative crystallography, beta-ketoacyl SYN brucella melitensis, fragments of LIFE; HET: 3MQ; 1.25A {Brucella melitensis biovar abortus} PDB: 3lrf_A* 3u0e_A* 3u0f_A*

Probab=99.61  E-value=1.3e-14  Score=131.90  Aligned_cols=172  Identities=10%  Similarity=0.068  Sum_probs=120.9

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHHhhccceeee---------------ecCCCCCHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRFENLLMQQKS---------------VSLPYEDPVSFAINA   58 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~~~~Gi~~r~---------------~~~~~e~~~~la~~A   58 (245)
                      |+.|.|.|+|...|.. .+.+++.+.+  |.+     +.+ ...++..+.               ....-....+|+.+|
T Consensus        22 m~~V~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~-~~~~~~~~~~g~~~fd~~~~i~~~~~~~~d~~~~l~~~a   99 (428)
T 3mqd_A           22 MRRVVVTGMGIVSSIG-SNTEEVTASLREAKSGISRAEEY-AELGFRCQVHGAPDIDIESLVDRRAMRFHGRGTAWNHIA   99 (428)
T ss_dssp             CCCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHH-HHTTCSCCEEECCCCCHHHHSCTGGGTTCCHHHHHHHHH
T ss_pred             CCCEEEEeeEEECCCc-CCHHHHHHHHHcCCCcceeCCcc-cccCCCcccccccCCChhhcCCHHHHhhCCHHHHHHHHH
Confidence            4679999999999987 4667666543  221     111 111111111               111123467899999


Q ss_pred             HHHHHHhcCCCCcCCcC----EEEEEeccCCCC--------------------------CCcHHHHHHHHcCCCCCccee
Q psy2407          59 AAPLIDNLSNIDKNSIE----LIITCSESGIDF--------------------------GKSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        59 a~~aL~~a~g~~~~dId----~li~~t~~~~~~--------------------------~p~~a~~l~~~LGl~~~~~~~  108 (245)
                      +++||+++ |+++++||    .+++++..+++.                          .+..+..|+..||++  .+++
T Consensus       100 a~~Al~dA-Gl~~~~i~~~~~Gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~--gp~~  176 (428)
T 3mqd_A          100 MDQAIADA-GLTEEEVSNERTGIIMGSGGPSTRTIVDSADITREKGPKRVGPFAVPKAMSSTASATLATFFKIK--GINY  176 (428)
T ss_dssp             HHHHHHHH-TCCHHHHSSTTEEEEEEESSCCHHHHHHHHHHHHHHCGGGGCTTCHHHHSTTHHHHHHHHHTTCC--SCEE
T ss_pred             HHHHHHHc-CCChhHccccceEEEEccCCCchHHHHHHHHHHHhcCccccCchhhccccccHHHHHHHHHcCCC--Ccee
Confidence            99999997 99999998    688887654321                          345789999999994  4899


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccC-------------cccc-ccccccc--cccccccee
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTE-------------DKNE-LTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~-------------~~~~-~~~~~~~--~~~~~GDGA  172 (245)
                      +|+.+|+|++.||..|.++|++|.+  +.+||+++|.++.....             .+++ +..++..  ...++||||
T Consensus       177 tv~~aCsSgl~Ai~~A~~~I~~G~~--d~alvgG~e~~s~~~~~~~~~~~~ls~~~~~~p~~~~rpfd~~~~G~v~gEGA  254 (428)
T 3mqd_A          177 SISSACATSNHCIGNAYEMIQYGKQ--DRMFAGGCEDLDWTLSVLFDAMGAMSSKYNDTPSTASRAYDKNRDGFVIAGGA  254 (428)
T ss_dssp             CCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCTTTTSGGGSCCTTBTTCCSBCBBCEE
T ss_pred             eecCccHHHHHHHHHHHHHHHcCCC--CEEEEEeecccchHHHHHHHHhhhhcccccCCcccccCcccCCCCCcccccce
Confidence            9999999999999999999999977  99999999997643210             0000 1111111  246799999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +|+||++
T Consensus       255 aavvL~~  261 (428)
T 3mqd_A          255 GVLVLED  261 (428)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEcc
Confidence            9999985

>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1

Probab=99.60  E-value=6.1e-15  Score=133.05  Aligned_cols=109  Identities=11%  Similarity=0.077  Sum_probs=97.4

Q ss_pred             ccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcch
Q psy2407          37 LLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACY  115 (245)
Q Consensus        37 ~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~  115 (245)
                      +.+.+|+...+++++.+|+.+|+++||+++ |+++++||.|++++.++++. .|..+..++..||++...++++++.+|+
T Consensus        12 T~~~~~~g~~~~~~~~~L~~~Aa~~Al~dA-gl~~~~id~v~~g~~~~~~~~~~~~a~~va~~lGl~~~~p~~~v~~aCa   90 (401)
T 1ulq_A           12 TPIGKHGGALASVRPDDLLAHALSVLVDRS-GVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCG   90 (401)
T ss_dssp             CCCEETTSTTTTSCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTCCTTCEEEEEECGGG
T ss_pred             CCccccCCCcCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecccCCCCCChHHHHHHHHhCCCCCccEeeccccch
Confidence            456555555578999999999999999997 99999999999999887665 6889999999999965689999999999


Q ss_pred             hHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         116 SCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       116 ~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |++.+|..|..+|++|.+  +.+||+++|.++.
T Consensus        91 s~~~Al~~A~~~I~~G~~--d~vLv~G~e~~s~  121 (401)
T 1ulq_A           91 SGLEAVAQAARAIWAGEG--KVYIGSGVESMSR  121 (401)
T ss_dssp             HHHHHHHHHHHHHHTTSC--SEEEEEEEEESSS
T ss_pred             HHHHHHHHHHHHHHCCCC--CEEEEEEEeecCC
Confidence            999999999999999977  9999999998765

>2gp6_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; thiolase fold, structural genomics, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis}

Probab=99.60  E-value=1.5e-13  Score=125.20  Aligned_cols=213  Identities=13%  Similarity=0.044  Sum_probs=135.2

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHH-hhccceeee--ec--CCC-----------CCHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRF-ENLLMQQKS--VS--LPY-----------EDPVSFAINA   58 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~-~~~Gi~~r~--~~--~~~-----------e~~~~la~~A   58 (245)
                      +.|.|.|+|...|... +.+++.+.+  |.+     +.+- ...++..+.  ..  ++.           .....|+.+|
T Consensus        28 ~~vaI~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~d~~~~l~l~a  106 (434)
T 2gp6_A           28 PYVVVTGIAMTTALAT-DAETTWKLLLDRQSGIRTLDDPFVEEFDLPVRIGGHLLEEFDHQLTRIELRRMGYLQRMSTVL  106 (434)
T ss_dssp             CCEEEEEEEEECSSCS-SHHHHHHHHHTTCCCEEECCCHHHHHHCCSCCEEECCSCCSTTSSCHHHHHTCCHHHHHHHHH
T ss_pred             CCEEEEeeEEeCCCCC-CHHHHHHHHHcCCCeeeeCCccccccccCccceeEEcCCchhhhCCHHHHHhCCHHHHHHHHH
Confidence            4699999999999984 667765543  211     1111 001111111  00  111           2347899999


Q ss_pred             HHHHHHhcCCCC---cCCcCEEEEEeccCCC-----------------CC--------C-cHHHHHHHHcCCCCCcceee
Q psy2407          59 AAPLIDNLSNID---KNSIELIITCSESGID-----------------FG--------K-SMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        59 a~~aL~~a~g~~---~~dId~li~~t~~~~~-----------------~~--------p-~~a~~l~~~LGl~~~~~~~d  109 (245)
                      +++||+++ |++   +++|+ |++++.++++                 ..        + ..+.+|+..||++  .++++
T Consensus       107 a~~ALedA-G~~~~~~~~ig-v~vgt~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~is~~lgl~--Gp~~~  182 (434)
T 2gp6_A          107 SRRLWENA-GSPEVDTNRLM-VSIGTGLGSAEELVFSYDDMRARGMKAVSPLTVQKYMPNGAAAAVGLERHAK--AGVMT  182 (434)
T ss_dssp             HHHHHHHT-TCCCCCTTSEE-EEEECSSCSCHHHHHHHHHHTTSCSSSSCTTHHHHHSTTHHHHHHHHHSCCC--SCEEC
T ss_pred             HHHHHHhc-CCCccCCCceE-EEEccccccHHHHHHHHHHHHhcCccccChhhhhccchhhHHHHHhhhhcCC--CCeEE
Confidence            99999997 984   55565 5666665443                 11        1 4688999999994  48999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc------------ccc-----Ccccccccccc--cccccccc
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF------------FVT-----EDKNELTMEWA--FFEPSGGA  170 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~------------~~~-----~~~~~~~~~~~--~~~~~~GD  170 (245)
                      ++.+|+|++.||..|.++|++|.+  +.+||+++|.++.            .+.     ++.  +..++.  ...+++||
T Consensus       183 v~~aCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~~ls~~~~~p~~--~~~pfd~~~~g~v~gd  258 (434)
T 2gp6_A          183 PVSACASGAEAIARAWQQIVLGEA--DAAICGGVETRIEAVPIAGFAQMRIVMSTNNDDPAG--ACRPFDRDRDGFVFGE  258 (434)
T ss_dssp             EECGGGHHHHHHHHHHHHHHHTSC--SEEEEEEECCCCCHHHHHHHHTTTSSCCCCTTCTTT--SCCSSBTTCCCCCBBC
T ss_pred             eCCCCcHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHHHHHHhcCCCCCCCC--ceecccccCCCcceec
Confidence            999999999999999999999977  9999999998765            222     111  111221  12467999


Q ss_pred             eeEEEEecCC-------C----CeeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchh
Q psy2407         171 GAVAMLISDK-------P----EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKI  239 (245)
Q Consensus       171 GAaA~ll~~~-------~----~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (245)
                      ||+|+||++.       .    .|.++...+||..      ...|..     .+        +...++.++.+++.|+++
T Consensus       259 GAaavvL~~~~~A~~~g~~i~a~I~g~~~~~Dg~~------~~~p~~-----~~--------~~~~~ai~~al~~Agl~~  319 (434)
T 2gp6_A          259 GGALLLIETEEHAKARGANILARIMGASITSDGFH------MVAPDP-----NG--------ERAGHAITRAIQLAGLAP  319 (434)
T ss_dssp             CEEEEEEEEHHHHHTTTCCCCEEEEEEEEEECCSC------SSSCCT-----TC--------HHHHHHHHHHHHHTTCCT
T ss_pred             ceEEEEeCcHHHHHHCCCceEEEEEEEEEecCCCC------CCCCCC-----Ch--------HHHHHHHHHHHHHcCCCH
Confidence            9999999752       1    1334444344432      122221     11        345566777777888877


Q ss_pred             hhh
Q psy2407         240 IVY  242 (245)
Q Consensus       240 ~~~  242 (245)
                      .++
T Consensus       320 ~dI  322 (434)
T 2gp6_A          320 GDI  322 (434)
T ss_dssp             TTE
T ss_pred             HHc
Confidence            643

>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A

Probab=99.59  E-value=1.5e-13  Score=124.90  Aligned_cols=173  Identities=14%  Similarity=0.038  Sum_probs=116.0

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-ccee-----------eee-----cCCCCCH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-LMQQ-----------KSV-----SLPYEDP   51 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-Gi~~-----------r~~-----~~~~e~~   51 (245)
                      |..+.|.|+|...|-- .+.+++.+.+  |.+         .+.+. +. |...           ..+     +..-...
T Consensus         9 ~~~~viTG~G~vsp~g-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~i~~~~~~~~d~~   87 (428)
T 3kzu_A            9 MRRVVITGLGLVSPLA-SGVEETWKRLLAGESGARRVTEFEVDDLACQIACRIPVGDGTNGTFNPDLHMDPKEQRKVDPF   87 (428)
T ss_dssp             CCCEEEEEEEEECSSC-BSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCBSSSSTTCBCGGGTSCHHHHTTSCHH
T ss_pred             ccceEEEeceEECCCc-CCHHHHHHHHHcCCCeeeeCCccccccCcCceeeEecccccccccCChhhcCCHHHHHhCCHH
Confidence            5679999999999997 4566665433  211         00000 00 1000           000     0011235


Q ss_pred             HHHHHHHHHHHHHhcCCCCcCC-cC----EEEEEecc--------------------------CCCCCCcHHHHHHHHcC
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNS-IE----LIITCSES--------------------------GIDFGKSMSTYIHHYLG  100 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~d-Id----~li~~t~~--------------------------~~~~~p~~a~~l~~~LG  100 (245)
                      ..|+.+|+++||+++ |+++++ ||    .+++++..                          +....+..+..|+..||
T Consensus        88 ~~l~l~aa~~AL~dA-Gl~~~~~id~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lg  166 (428)
T 3kzu_A           88 IVYAVGAADQALDDA-GWHPENDEDQVRTGVLIGSGIGGIEGIVEAGYTLRDKGPRRISPFFIPGRLINLASGHVSIKHK  166 (428)
T ss_dssp             HHHHHHHHHHHHHHH-TCCCCSHHHHHTEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTTTTTTCTTHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhc-CCChhhhccccceEEEEcccCCcchhHHHHHHHHHhcCccccCchhcccchhhhHHHHHHHHcC
Confidence            789999999999997 999999 87    56776652                          22334567889999999


Q ss_pred             CCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC---cccc-cccccc--c
Q psy2407         101 LNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE---DKNE-LTMEWA--F  163 (245)
Q Consensus       101 l~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~---~~~~-~~~~~~--~  163 (245)
                      ++ . ++++++.+|+|++.||..|.++|++|.+  +.+||+++|.+...           +..   .++. +..++.  .
T Consensus       167 l~-G-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~~~~pfd~~~  242 (428)
T 3kzu_A          167 LR-G-PNHSVVTACATGTHAIGDAARLIAFGDA--DVMVAGGTESPVSRISLAGFAACKALSTERNDDPTAASRPYDEDR  242 (428)
T ss_dssp             CC-S-CEECBCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCSCTTSGGGTCCTTBTTC
T ss_pred             CC-C-ceeeecCccHHHHHHHHHHHHHHHCCCC--CEEEEeeecCcCCHHHHHHHHHccccccCccCCcccccCCcccCC
Confidence            94 3 8999999999999999999999999977  99999999983211           100   0000 111111  1


Q ss_pred             ccccccceeEEEEecC
Q psy2407         164 FEPSGGAGAVAMLISD  179 (245)
Q Consensus       164 ~~~~~GDGAaA~ll~~  179 (245)
                      ...++||||+|+||++
T Consensus       243 ~G~v~gdGAaavvL~~  258 (428)
T 3kzu_A          243 DGFVMGEGAGIVVLEE  258 (428)
T ss_dssp             CSBCBBCEEEEEEEEE
T ss_pred             CceeecCceEEEEEcc
Confidence            2457999999999985

>2iwz_A 3-oxoacyl-[acyl-carrier-protein] synthase; mitochondria, mitochondrion, lipid synthesis, fatty acid SYN fatty acid biosynthesis; 1.65A {Homo sapiens} PDB: 2iwy_A 2c9h_A

Probab=99.59  E-value=7.8e-14  Score=127.20  Aligned_cols=172  Identities=11%  Similarity=0.034  Sum_probs=115.8

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHH-Hh----hc-cce-e------e---eec-----CCCCCHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVR-FE----NL-LMQ-Q------K---SVS-----LPYEDPVS   53 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~-~~----~~-Gi~-~------r---~~~-----~~~e~~~~   53 (245)
                      +.|.|.|+|...|.. .+.+++.+.+  |.+     +.+ ..    +. |.- .      +   .+.     ..-....+
T Consensus        21 ~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~fd~~~~~~~~~~~~~d~~~~   99 (438)
T 2iwz_A           21 RRVVITGIGLVTPLG-VGTHLVWDRLIGGESGIVSLVGEEYKSIPCSVAAYVPRGSDEGQFNEQNFVSKSDIKSMSSPTI   99 (438)
T ss_dssp             CCEEEEEEEEEETTE-ESHHHHHHHHHTTCCCEEECCSGGGTTSSCCEEECCCBSSSTTSBCGGGTSCHHHHTTSCHHHH
T ss_pred             CCEEEEeeeEECCCC-CCHHHHHHHHHcCCCccccCCchhcccCccceeeeeccccccccCChhhcCCHHHHHhcCHHHH
Confidence            368999999999987 5667765543  211     000 00    00 110 0      0   000     01123578


Q ss_pred             HHHHHHHHHHHhcCCCCc-CCcC----EEEEEeccCCC--------------------------CCCcHHHHHHHHcCCC
Q psy2407          54 FAINAAAPLIDNLSNIDK-NSIE----LIITCSESGID--------------------------FGKSMSTYIHHYLGLN  102 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~-~dId----~li~~t~~~~~--------------------------~~p~~a~~l~~~LGl~  102 (245)
                      |+.+|+++||+++ |+++ ++||    .|++++.++++                          .....+.+|+..||++
T Consensus       100 l~l~aa~~AL~dA-Gl~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~  178 (438)
T 2iwz_A          100 MAIGAAELAMKDS-GWHPQSEADQVATGVAIGMGMIPLEVVSETALNFQTKGYNKVSPFFVPKILVNMAAGQVSIRYKLK  178 (438)
T ss_dssp             HHHHHHHHHHHHH-TCCCCSHHHHHTEEEEEEESCCCHHHHHHHHHHHHHHCGGGSCTTHHHHTCTTHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHc-CCCCcccccCcceEEEEecccCcHHHHHHHHHHHHhcCCcccChhhhhhhhhhHHHHHHHHHhCCC
Confidence            9999999999997 9998 8887    57888765532                          1124789999999994


Q ss_pred             CCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------ccC-ccc-cccccccc--cccc
Q psy2407         103 RNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VTE-DKN-ELTMEWAF--FEPS  167 (245)
Q Consensus       103 ~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~~-~~~-~~~~~~~~--~~~~  167 (245)
                       . ++++++.+|+|++.||..|.++|++|.+  +.+||+++|.+ +..          +.. .++ .+..++..  ..++
T Consensus       179 -g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~p~~~~~pfd~~~~G~~  254 (438)
T 2iwz_A          179 -G-PNHAVSTACTTGAHAVGDSFRFIAHGDA--DVMVAGGTDSCISPLSLAGFSRARALSTNSDPKLACRPFHPKRDGFV  254 (438)
T ss_dssp             -S-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCSCTTTSCCTTCTTCCSBC
T ss_pred             -C-ceeeecCchhHHHHHHHHHHHHHHcCCC--CEEEEEeeehhcCHHHHHHHHhcCCcCCCCCCCcccccCCCCCCCEE
Confidence             4 8999999999999999999999999977  99999999974 321          000 000 01111111  2367


Q ss_pred             ccceeEEEEecC
Q psy2407         168 GGAGAVAMLISD  179 (245)
Q Consensus       168 ~GDGAaA~ll~~  179 (245)
                      +||||+|+||++
T Consensus       255 ~geGAaavvL~~  266 (438)
T 2iwz_A          255 MGEGAAVLVLEE  266 (438)
T ss_dssp             BBCEEEEEEEEE
T ss_pred             eeceEEEEEecc
Confidence            999999999975

>2wge_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; beta ketoacyl synthase I thiolactomycin, cytoplasm, transferase, acyltransferase; HET: TLM; 1.80A {Mycobacterium tuberculosis} PDB: 2wgd_A* 2wgg_A* 2wgf_A*

Probab=99.57  E-value=2.9e-13  Score=122.63  Aligned_cols=171  Identities=13%  Similarity=0.017  Sum_probs=114.5

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHH-hhccceeee--ecC--C-----------CCCHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRF-ENLLMQQKS--VSL--P-----------YEDPVSFAIN   57 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~-~~~Gi~~r~--~~~--~-----------~e~~~~la~~   57 (245)
                      |+.|.|.|+|...|.. .+.+++.+.+  |.+     +.+- ...++..+.  ...  +           -.....|+.+
T Consensus        11 ~~~vaI~G~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~d~~~~l~l~   89 (416)
T 2wge_A           11 FPSVVVTAVTATTSIS-PDIESTWKGLLAGESGIHALEDEFVTKWDLAVKIGGHLKDPVDSHMGRLDMRRMSYVQRMGKL   89 (416)
T ss_dssp             SCCEEEEEEEEEESSC-SSHHHHHHHHHTTCCCCEECCCHHHHHHTCSCCEEBCCSSCGGGGCCHHHHHHSCHHHHHHHH
T ss_pred             CCcEEEEeeEEECCCC-CCHHHHHHHHHcCCCEEEeCCccccccccCCccEEEEeCCchhhhCCHHHHHhcCHHHHHHHH
Confidence            3569999999999998 4667766543  211     1111 001111111  000  0           0224589999


Q ss_pred             HHHHHHHhcCCCCcCCcCE----EEEEeccCCCC-----------------CC---------cHHHHHHHHcCCCCCcce
Q psy2407          58 AAAPLIDNLSNIDKNSIEL----IITCSESGIDF-----------------GK---------SMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        58 Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~-----------------~p---------~~a~~l~~~LGl~~~~~~  107 (245)
                      |+++||+++ |+  +++|.    |++++.++++.                 .|         ..+.+|+..||++  .++
T Consensus        90 aa~~AL~dA-G~--~~~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~lgl~--gp~  164 (416)
T 2wge_A           90 LGGQLWESA-GS--PEVDPDRFAVVVGTGLGGAERIVESYDLMNAGGPRKVSPLAVQMIMPNGAAAVIGLQLGAR--AGV  164 (416)
T ss_dssp             HHHHHHHHT-TC--CCCCGGGEEEEEECCSCCCTHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCE
T ss_pred             HHHHHHHHc-CC--CccCCCceEEEEeecCCcHHHHHHHHHHHHhcCcccCCchhhccccchhHHHHHHHHhccC--CCc
Confidence            999999997 98  44553    77777765431                 12         4688999999994  489


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccC-c-ccc-cccccc--cccccccce
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTE-D-KNE-LTMEWA--FFEPSGGAG  171 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~-~-~~~-~~~~~~--~~~~~~GDG  171 (245)
                      ++++.+|+|++.||..|.++|++|.+  +.+||+++|.++..           +.. . +++ +..++.  ....++|||
T Consensus       165 ~~v~~aCsS~l~Al~~A~~~I~~G~~--d~~LvgG~e~~~~~~~~~~~~~~~~l~~~~~~~~~~~~pfd~~~dg~v~geG  242 (416)
T 2wge_A          165 MTPVSACSSGSEAIAHAWRQIVMGDA--DVAVCGGVEGPIEALPIAAFSMMRAMSTRNDEPERASRPFDKDRDGFVFGEA  242 (416)
T ss_dssp             ECCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEECCCCCCHHHHHHHHTTTCBCCCTTSGGGSCCTTBTTCCCBCBBCE
T ss_pred             ccccCchHHHHHHHHHHHHHHHcCCC--CEEEEeeecCccchHHHHHHHhcchhhccccCCcccccccccCCCCccccCc
Confidence            99999999999999999999999977  99999999987654           210 0 000 111111  124679999


Q ss_pred             eEEEEecC
Q psy2407         172 AVAMLISD  179 (245)
Q Consensus       172 AaA~ll~~  179 (245)
                      |+|+||++
T Consensus       243 aaavvL~~  250 (416)
T 2wge_A          243 GALMLIET  250 (416)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEECc
Confidence            99999975

>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A

Probab=99.57  E-value=2.6e-13  Score=123.28  Aligned_cols=172  Identities=10%  Similarity=0.046  Sum_probs=116.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC-----hH----HHh-hc-c-ceee---ee-----cCCCCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TV----RFE-NL-L-MQQK---SV-----SLPYEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~----~~~-~~-G-i~~r---~~-----~~~~e~~~~la~~Aa   59 (245)
                      ..|.|.|+|...|... +.+++.+.+  |.+     +.    .+. +. | +...   .+     +..-.....|+.+|+
T Consensus        18 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~i~~~~~~~~d~~~~l~l~aa   96 (427)
T 3ho9_A           18 RRVVVTGLGMLSPVGN-TVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG   96 (427)
T ss_dssp             CCEEEEEEEEEBTTBS-SHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCSSCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CCEEEEeeeEECCCCC-CHHHHHHHHHcCCCceeeCCccccccCccceeeEcCCCChhhcCCHHHHhhCCHHHHHHHHHH
Confidence            4699999999999974 666665543  211     00    000 00 1 1000   00     000123567999999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCC--------------------------CCCCcHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGI--------------------------DFGKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~--------------------------~~~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||    .+++++.++.                          ...+..+..|+..||++  -++++
T Consensus        97 ~~AL~dA-Gl~~~~i~~~~~gv~vg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~--Gp~~~  173 (427)
T 3ho9_A           97 VQAMQDS-GLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLR--GPSIS  173 (427)
T ss_dssp             HHHHHHH-TCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCEEC
T ss_pred             HHHHHHC-CCCcccccccceEEEEccccccHHHHHHHHHHHHhcCccccCcceeccccchHHHHHHHHHhCCC--CCeec
Confidence            9999997 99999999    5888776421                          12345788999999994  38999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCc-------------ccc-ccccccc--ccccccceeE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTED-------------KNE-LTMEWAF--FEPSGGAGAV  173 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~-------------~~~-~~~~~~~--~~~~~GDGAa  173 (245)
                      |+.+|+|++.||..|..+|++|.+  +.+||+++|.++......             +++ +..++..  ..+++||||+
T Consensus       174 v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~p~~~~~~~~~~~ls~~~~~~~~~~~pfd~~~~G~v~geGAa  251 (427)
T 3ho9_A          174 IATAATSGVHNIGHAARIIAYGDA--DVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG  251 (427)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEE
T ss_pred             ccchhHHHHHHHHHHHHHHHcCCC--CEEEEeeecccCCHHHHHHHHhccCcccCCCCCCcccCCccCCCCCceeeeeEE
Confidence            999999999999999999999977  999999999986321100             000 0111111  2467999999


Q ss_pred             EEEecC
Q psy2407         174 AMLISD  179 (245)
Q Consensus       174 A~ll~~  179 (245)
                      |+||++
T Consensus       252 avvL~~  257 (427)
T 3ho9_A          252 MLVLEE  257 (427)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            999985

>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ...

Probab=99.55  E-value=5e-14  Score=126.67  Aligned_cols=99  Identities=7%  Similarity=0.105  Sum_probs=90.4

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .+++..+|+.+|+++||+++ |+++++||.+++++..+....+..+..++..||+++..++++++.+|+|++.+|..|.+
T Consensus        23 ~~~~~~~L~~~a~~~Al~dA-gl~~~~id~~~~g~~~~~~~~~~~a~~ia~~lgl~~~~p~~~v~~aCaSgl~Al~~A~~  101 (392)
T 2vu1_A           23 ANTPAHELGATVISAVLERA-GVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLCGSGLRAVALGMQ  101 (392)
T ss_dssp             TTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCCCCCcHHHHHHHHHcCCCCCceEEEecccchHHHHHHHHHHH
Confidence            46889999999999999997 99999999999998887666688999999999996447999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .|++|.+  +.+|++++|.++.
T Consensus       102 ~I~~G~~--d~vlvgG~e~~s~  121 (392)
T 2vu1_A          102 QIATGDA--SIIVAGGMESMSM  121 (392)
T ss_dssp             HHHTTSC--SCEEEEEEEESTT
T ss_pred             HHHCCCC--CEEEEEEEeccCC
Confidence            9999977  9999999998764

>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A

Probab=99.55  E-value=8.1e-14  Score=125.53  Aligned_cols=99  Identities=8%  Similarity=0.007  Sum_probs=90.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      .++++.+|+.+|+++||+++ |+++++||.+++++.++....+..+..++..||++...++++++.+|+|++.+|..|..
T Consensus        26 ~~~~~~~L~~~a~~~Al~dA-Gl~~~~id~v~~g~~~~~~~~~~~a~~ia~~lgl~~~~p~~~v~~aCaSg~~Ai~~A~~  104 (397)
T 1wl4_A           26 AAVPVQDLGSTVIKEVLKRA-TVAPEDVSEVIFGHVLAAGCGQNPVRQASVGAGIPYSVPAWSCQMICGSGLKAVCLAVQ  104 (397)
T ss_dssp             TTSCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSCEEEECCGGGHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEecCCCCCCCHHHHHHHHHcCCCCCccEEEecCcChhHHHHHHHHHH
Confidence            46789999999999999997 99999999999998887666788999999999995578999999999999999999999


Q ss_pred             HHhcCCCCCCeEEEEEeccccc
Q psy2407         127 FILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       127 ~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++|.+  +.+|++++|.++.
T Consensus       105 ~I~~G~~--d~vlagG~e~~s~  124 (397)
T 1wl4_A          105 SIGIGDS--SIVVAGGMENMSK  124 (397)
T ss_dssp             HHHTTSC--SEEEEEEEEESTT
T ss_pred             HHHCCCC--CEEEEEEEeecCC
Confidence            9999977  9999999998864

>2ix4_A 3-oxoacyl-[acyl-carrier-protein] synthase; beta-ketoacyl-(acyl carrier protein) synthase, lipid metabol condensing enzyme; 1.95A {Arabidopsis thaliana} SCOP: c.95.1.1 c.95.1.1 PDB: 1w0i_A

Probab=99.54  E-value=1.7e-13  Score=124.75  Aligned_cols=166  Identities=10%  Similarity=0.065  Sum_probs=114.3

Q ss_pred             HHHHHHHHHHHHHHhcCCC-CcCCcC----EEEEEeccCC-----------------CCC---------CcHHHHHHHHc
Q psy2407          51 PVSFAINAAAPLIDNLSNI-DKNSIE----LIITCSESGI-----------------DFG---------KSMSTYIHHYL   99 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~-~~~dId----~li~~t~~~~-----------------~~~---------p~~a~~l~~~L   99 (245)
                      ..+|+.+|+++||+++ |+ ++++||    .|++++.++.                 ...         ...+.+|+..|
T Consensus        88 ~~~l~l~aa~~AL~dA-G~~~~~~i~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~a~~ia~~l  166 (431)
T 2ix4_A           88 FIGYAVCAADEALRDA-EWLPTEEEEKERTGVSIGGGIGSICDIVEAAQLICEKRLRRLSPFFIPKILVNMASGHVSMKY  166 (431)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCCCSHHHHHTEEEEEEESSCCHHHHHHHHHHHHTTCGGGCCTTHHHHHCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCCccccCCCCEEEEEeeccccHHHHHHHHHHHHhcCcccCChhhhhcchhHHHHHHHHHHH
Confidence            4689999999999997 99 888887    5777765432                 111         25788999999


Q ss_pred             CCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------c------Ccccccccccc
Q psy2407         100 GLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------T------EDKNELTMEWA  162 (245)
Q Consensus       100 Gl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~------~~~~~~~~~~~  162 (245)
                      |++ . ++++++.+|+|++.||..|..+|++|.+  +.+||+++|.++...           .      ++.  +..++.
T Consensus       167 gl~-g-p~~~v~taCsS~l~Al~~A~~~I~~G~~--d~aLvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~~~--~~~pfd  240 (431)
T 2ix4_A          167 GFQ-G-PNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNSSPQE--ASRPFD  240 (431)
T ss_dssp             TCC-S-CEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCGGG--SCCTTB
T ss_pred             CCC-C-ceeCccChhHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccccCccccCCccc--ccccCC
Confidence            994 3 8999999999999999999999999977  999999999865421           0      011  111111


Q ss_pred             --cccccccceeEEEEecCC-------C----CeeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHH
Q psy2407         163 --FFEPSGGAGAVAMLISDK-------P----EIFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFK  229 (245)
Q Consensus       163 --~~~~~~GDGAaA~ll~~~-------~----~i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~  229 (245)
                        ...+++||||+|+||++.       .    .|.++...+||..      ...|..     ++        +...++.+
T Consensus       241 ~~~~g~~~gdGAaavvL~~~~~A~~~g~~i~a~i~g~~~~~dg~~------~~~p~~-----~~--------~~~~~ai~  301 (431)
T 2ix4_A          241 CDRDGFVIGEGSGVIVLEEYEHAKRRGAKIYAELCGYGMSGDAHH------ITQPPE-----DG--------KGAVLAMT  301 (431)
T ss_dssp             TTCCSBCBBCEEEEEEEEEHHHHHHTTCCCCEEEEEEEEEECCSC------SSCCCT-----TC--------HHHHHHHH
T ss_pred             CCCCCceeecceEEEEEccHHHHHhCCCceEEEEeeeeecCCCCC------CCCCCC-----CH--------HHHHHHHH
Confidence              123679999999999752       1    2334444444431      112221     11        33456677


Q ss_pred             HHHHHhcchhhhh
Q psy2407         230 EYKKRVQYKIIVY  242 (245)
Q Consensus       230 ~~~~~~~~~~~~~  242 (245)
                      +.+++.|+++.++
T Consensus       302 ~al~~agl~~~dI  314 (431)
T 2ix4_A          302 RALRQSGLCPNQI  314 (431)
T ss_dssp             HHHHHHTCCGGGC
T ss_pred             HHHHHcCCCHHHc
Confidence            7777888877653

>1afw_A 3-ketoacetyl-COA thiolase; fatty acid metabolism; 1.80A {Saccharomyces cerevisiae} SCOP: c.95.1.1 c.95.1.1 PDB: 1pxt_A

Probab=99.54  E-value=1.8e-14  Score=129.69  Aligned_cols=109  Identities=13%  Similarity=0.062  Sum_probs=96.3

Q ss_pred             ccceee-eecCCCCCHHHHHHHHHHHHHHhcCC----CCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec
Q psy2407          37 LLMQQK-SVSLPYEDPVSFAINAAAPLIDNLSN----IDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK  111 (245)
Q Consensus        37 ~Gi~~r-~~~~~~e~~~~la~~Aa~~aL~~a~g----~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~  111 (245)
                      +.+.+| +...+++++.+|+.+|+++||+++ |    +++++||.|++++.++++..|..+..++..||++...++++++
T Consensus        20 T~~g~~~~g~~~~~~~~~La~~Aa~~Al~~A-g~~~~l~~~~id~v~~g~~~~~~~~~~~a~~va~~lGl~~~~p~~~v~   98 (393)
T 1afw_A           20 SAIGKGFKGAFKDVNTDYLLYNFLNEFIGRF-PEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALN   98 (393)
T ss_dssp             CCCEETTTSTTTTCCHHHHHHHHHHHHHHTS-CHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTCCTTSCEEEEE
T ss_pred             CCceeCCCCCCCCCCHHHHHHHHHHHHHHhC-CCCCCCCHHHCCEEEEEecCCCCCCChHHHHHHHHcCCCCCceEEEEc
Confidence            455555 245568999999999999999997 9    9999999999998887666778899999999995568999999


Q ss_pred             CcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         112 QACYSCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       112 ~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|+|++.+|..|..+|++|.+  +.+||+++|.++.
T Consensus        99 ~aCasg~~Al~~A~~~I~~G~~--d~vLv~G~e~~s~  133 (393)
T 1afw_A           99 RQCSSGLTAVNDIANKIKVGQI--DIGLALGVESMTN  133 (393)
T ss_dssp             CGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEEEHHH
T ss_pred             CcCHHHHHHHHHHHHHHHCCCC--CEEEEEEEEecCC
Confidence            9999999999999999999977  9999999998753

>2vba_A 3-oxoacyl-[acyl-carrier-protein] synthase 1; cytoplasm, antibiotic, transferase, amino-thiazole, acyltransferase, lipid synthesis; HET: P4T; 1.36A {Escherichia coli} SCOP: c.95.1.1 c.95.1.1 PDB: 1fj4_A* 1g5x_A 2aq7_A* 1fj8_A* 2aqb_A 2bui_A 2buh_A 2vb7_A* 2vb8_A 2vb9_A* 1h4f_A 1dd8_A 2cdh_A 2bz4_A 2byz_A 2bz3_A* 2byy_A* 1f91_A* 2cf2_A 2byw_A ...

Probab=99.51  E-value=3.9e-13  Score=121.39  Aligned_cols=170  Identities=10%  Similarity=0.074  Sum_probs=119.4

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHHHhhccceeeee----cCC-----------CCCHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVRFENLLMQQKSV----SLP-----------YEDPVSFAINA   58 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~~~~~Gi~~r~~----~~~-----------~e~~~~la~~A   58 (245)
                      |+.|.|.|+|...|.. .+.+++.+.+  |.+     +.+ ...++..+..    .++           -.....|+.+|
T Consensus         1 m~~v~ItG~g~~~p~g-~~~~~~w~~l~~g~~~i~~~~~~-~~~~~~~~~~~~v~fd~~~~~~~~~~~~~d~~~~l~l~a   78 (406)
T 2vba_A            1 MKRAVITGLGIVSSIG-NNQQEVLASLREGRSGITFSQEL-KDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLS   78 (406)
T ss_dssp             CCCEEEEEEEEEBTTB-SSHHHHHHHHHHTCCCEEECHHH-HHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHH
T ss_pred             CCCEEEEeeEEECCCC-CCHHHHHHHHHcCCCeEEeCCcc-cccCCccceEEEecCChhhcCCHHHHHhcCHHHHHHHHH
Confidence            7789999999999987 5667765532  221     111 1011111100    011           12357899999


Q ss_pred             HHHHHHhcCCCCcCCcCE-----EEEEeccCCC---------------------------CCCcHHHHHHHHcCCCCCcc
Q psy2407          59 AAPLIDNLSNIDKNSIEL-----IITCSESGID---------------------------FGKSMSTYIHHYLGLNRNCR  106 (245)
Q Consensus        59 a~~aL~~a~g~~~~dId~-----li~~t~~~~~---------------------------~~p~~a~~l~~~LGl~~~~~  106 (245)
                      +++||+++ |+++++||.     |++++.++++                           ..+..+..|+..||+.  -+
T Consensus        79 a~~Al~dA-g~~~~~i~~~~~~gv~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~lgl~--Gp  155 (406)
T 2vba_A           79 MEQAIADA-GLSPEAYQNNPRVGLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIH--GV  155 (406)
T ss_dssp             HHHHHHHH-TCCHHHHTTCTTEEEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCC--SC
T ss_pred             HHHHHHHC-CCChhHcCCCCCEEEEEEECCcchHHHHHHHHHHHhccCccccChhhhhhhhhHHHHHHHHHhccCC--Cc
Confidence            99999997 999888885     8888776542                           0135688999999994  38


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc----------cc------Cccccccccccc--ccccc
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF----------VT------EDKNELTMEWAF--FEPSG  168 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~----------~~------~~~~~~~~~~~~--~~~~~  168 (245)
                      +++|+.+|+|++.||..|.++|++|.+  +.+||+++|.++..          +.      ++.  +..++..  ..+++
T Consensus       156 ~~~v~taCsS~l~Al~~A~~~I~~G~~--d~alvgG~e~~~~~~~~~~~~~~~ls~~~~~~p~~--~~~pfd~~~~G~v~  231 (406)
T 2vba_A          156 NYSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEK--ASRTYDAHRDGFVI  231 (406)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCSCTTSGGG--SCCTTBTTCCSBCB
T ss_pred             eeeeccchhHHHHHHHHHHHHHHcCCC--CEEEEeeeccccChHHHHHhhccccccccCCCCcc--ccCcCcCCCCceEe
Confidence            999999999999999999999999977  99999999987543          11      111  1111111  24679


Q ss_pred             cceeEEEEecC
Q psy2407         169 GAGAVAMLISD  179 (245)
Q Consensus       169 GDGAaA~ll~~  179 (245)
                      ||||+++||++
T Consensus       232 gEGaaavvL~~  242 (406)
T 2vba_A          232 AGGGGMVVVEE  242 (406)
T ss_dssp             BCEEEEEEEEE
T ss_pred             eceEEEEEeCc
Confidence            99999999975

>2wu9_A 3-ketoacyl-COA thiolase 2, peroxisomal; cysteine oxidation, fatty acid metabolism, oxylipin biosynthesis, plant lipid metabolism; 1.50A {Arabidopsis thaliana} PDB: 2c7y_A 2c7z_A 2wua_A

Probab=99.49  E-value=5.2e-14  Score=128.47  Aligned_cols=110  Identities=10%  Similarity=0.068  Sum_probs=94.7

Q ss_pred             hccceeee-ecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCc
Q psy2407          36 NLLMQQKS-VSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQA  113 (245)
Q Consensus        36 ~~Gi~~r~-~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~  113 (245)
                      ++.+.+|+ ....+++..+|+.+|+++||+++ |+++++||.|++++.++++. .+..+..++..||++...++++++.+
T Consensus        39 rT~~g~~~~g~~~~~~~~~La~~Aa~~AL~dA-Gl~~~~Id~vi~g~~~~~~~~~~~~a~~va~~lGl~~~~p~~~v~~a  117 (442)
T 2wu9_A           39 RTPLCKSKRGNFKDTYPDDLLAPVLRALIEKT-NLNPSEVGDIVVGTVLAPGSQRASECRMAAFYAGFPETVAVRTVNRQ  117 (442)
T ss_dssp             ECCCEETTTSTTTTCCHHHHHHHHHHHHHHHH-TCCGGGCCCEEEECCSSBHHHHHHHHHHHHHHTTCCTTSCEEEEECG
T ss_pred             cCCeeecCCCCcCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeecCccCCCChHHHHHHHHcCCCCCceEEEeCCc
Confidence            34555543 34468899999999999999997 99999999999998876432 46778999999999557899999999


Q ss_pred             chhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         114 CYSCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       114 C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      |+|++.+|..|..+|++|.+  +.+||+++|.++.
T Consensus       118 CaSg~~Al~~A~~~I~sG~~--d~vLvgG~e~~s~  150 (442)
T 2wu9_A          118 CSSGLQAVADVAAAIKAGFY--DIGIGAGLESMTT  150 (442)
T ss_dssp             GGHHHHHHHHHHHHHHTTSC--SEEEEEEEEETTT
T ss_pred             CHHHHHHHHHHHHHHHCCCC--CEEEEEEEeecCC
Confidence            99999999999999999977  9999999998865

>2qo3_A Eryaii erythromycin polyketide synthase modules 3; ketosynthase, acyltransferase, phosphopantetheine, transfera; 2.59A {Saccharopolyspora erythraea}

Probab=99.49  E-value=7.6e-13  Score=130.40  Aligned_cols=167  Identities=14%  Similarity=0.082  Sum_probs=117.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCCCC-------------C-----cHHHHHHHHcCCCCCcce
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGIDFG-------------K-----SMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~~-------------p-----~~a~~l~~~LGl~~~~~~  107 (245)
                      ....|+.+|+.+||+++ |+++++||.    |++++.++++..             +     ..+.+|+..||++ . ++
T Consensus        94 p~~rL~leaa~eALedA-Gi~~~~i~~~~~gV~vG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-ps  170 (915)
T 2qo3_A           94 PQQRLLLETSWELVENA-GIDPHSLRGTATGVFLGVAKFGYGEDTAAAEDVEGYSVTGVAPAVASGRISYTMGLE-G-PS  170 (915)
T ss_dssp             HHHHHHHHHHHHHHHHT-TCCGGGGTTBCCEEEEECCCCCTTTTCC---CTTCHHHHTTCHHHHHHHHHHHHTBC-S-CE
T ss_pred             HHHHHHHHHHHHHHHHc-CCChHHcCCcceEEEEEecCchHHhhhcccccccccccccccccHHHHHHHHHhCCC-C-CE
Confidence            35789999999999997 999999994    888887766531             1     4678999999994 4 89


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCcccccccccc--cccccccceeEE
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWA--FFEPSGGAGAVA  174 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~--~~~~~~GDGAaA  174 (245)
                      ++|+.+|+|++.||+.|.++|++|.+  +.+||+++|.++..           +.++.  +..++.  ...+++||||+|
T Consensus       171 ~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGve~~~~p~~~~~~~~~~~ls~~g--~~~~Fd~~adG~v~gEGaga  246 (915)
T 2qo3_A          171 ISVDTACSSSLVALHLAVESLRKGES--SMAVVGGAAVMATPGVFVDFSRQRALAADG--RSKAFGAGADGFGFSEGVTL  246 (915)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHTTSC--SSEEEEEEECCSSTHHHHHHHTTTCBCSSC--CCCTTBTTCCCBCBBCEEEE
T ss_pred             EEECCCCHHHHHHHHHHHHHHHcCCC--CEEEEeEehhhcCHHHHHHHhhhcccCCCC--CcccccCCCCceeecCceEE
Confidence            99999999999999999999999977  99999999987542           11111  111111  124679999999


Q ss_pred             EEecCC-------CC----eeEEeeccccccccccccccCCCCCCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhh
Q psy2407         175 MLISDK-------PE----IFQFDIGSNGYYSFEVMDTCRPIPDSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVY  242 (245)
Q Consensus       175 ~ll~~~-------~~----i~~~~~~~~g~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (245)
                      +||++.       ..    |.++...+||...    ....|.               .+...++.++.+++.|+++.++
T Consensus       247 vVL~~~~~A~~~g~~i~a~I~G~~~~~dg~~~----~~~~p~---------------~~~~~~~i~~Al~~Agl~p~dI  306 (915)
T 2qo3_A          247 VLLERLSEARRNGHEVLAVVRGSALNQDGASN----GLSAPS---------------GPAQRRVIRQALESCGLEPGDV  306 (915)
T ss_dssp             EEEEEHHHHHHTTCCCCEEEEEEEEEECCSCS----STTCCC---------------HHHHHHHHHHHHHHTTCCGGGC
T ss_pred             EEEeEhHHhhhCCCCeEEEEEEEEEecCCCcc----CCCCCC---------------HHHHHHHHHHHHHHcCCCHHHC
Confidence            999752       22    2333333333311    111121               2345667777778888887654

>2ib8_A Acetyl-COA acetyltransferase; thiolase fold, potassium ION, chloride, beta-alpha-beta-ALPH alpha-beta-BETA topology; HET: MES; 1.85A {Homo sapiens} PDB: 2ib7_A* 2ib9_A* 2ibu_A* 2ibw_A* 2iby_A* 2f2s_A*

Probab=99.48  E-value=2.4e-13  Score=122.27  Aligned_cols=100  Identities=12%  Similarity=0.032  Sum_probs=91.9

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      ..+++..+|+.+|+++||+++ |+++++||.+++++..++...+..+..++..||++.+.++++++.+|+|++.||..|.
T Consensus        27 ~~~~~~~~l~~~a~~~Al~dA-gl~~~~id~~~~g~~~~~~~~~~~a~~va~~lgl~~~~p~~~v~~aCaS~~~Al~~A~  105 (395)
T 2ib8_A           27 LSLLPATKLGSIAIQGAIEKA-GIPKEEVKEAYMGNVLQGGEGQAPTRQAVLGAGLPISTPCTTINKVCASGMKAIMMAS  105 (395)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTCCEEEEECGGGHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccCCCCCchHHHHHHHHcCCCCCceEEEecccccHHHHHHHHHH
Confidence            356889999999999999997 9999999999999888777778899999999999556899999999999999999999


Q ss_pred             HHHhcCCCCCCeEEEEEeccccc
Q psy2407         126 NFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       126 ~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      .+|++|.+  +.+||+++|.++.
T Consensus       106 ~~I~~G~~--d~vlvgG~e~~s~  126 (395)
T 2ib8_A          106 QSLMCGHQ--DVMVAGGMESMSN  126 (395)
T ss_dssp             HHHHTTSC--SEEEEEEEEEGGG
T ss_pred             HHHHCCCC--CEEEEEeeecccC
Confidence            99999977  9999999998765

>3hhd_A Fatty acid synthase; transferase, multienzyme, megasynthase, fatty acid synthesis, acetylation, cytoplasm, fatty acid biosynthesis, hydrolase; 2.15A {Homo sapiens} PDB: 2jfk_A* 2jfd_A

Probab=99.45  E-value=5e-12  Score=125.15  Aligned_cols=172  Identities=15%  Similarity=0.076  Sum_probs=119.2

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC------hHH----Hh---hcc-ceeeeecCC------------CCCHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD------TVR----FE---NLL-MQQKSVSLP------------YEDPV   52 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~------~~~----~~---~~G-i~~r~~~~~------------~e~~~   52 (245)
                      +..|.|+|+|+.+|.. .+.+++.+.+  |.+      ..|    +.   +.| +..-...++            -....
T Consensus         3 ~~~IaIvGmg~r~P~~-~~~~~~W~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~FD~~~f~i~~~ea~~mDp~~   81 (965)
T 3hhd_A            3 GEEVVIAGMSGKLPES-ENLQEFWDNLIGGVDMVTDDDRRWKAGLYGLPRRSGKLKDLSRFDASFFGVHPKQAHTMDPQL   81 (965)
T ss_dssp             CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEECSSSSSCTTGGGCCSCEECCSCSSCCCTTTTTCCHHHHHTSCHHH
T ss_pred             CCCEEEEeeeEECCCC-CCHHHHHHHHHcCCCcccCCCcccccccccCcccccccCChhhcChhhcCCCHHHHhhcCHHH
Confidence            3578999999999986 5677766543  211      001    00   011 000000011            12246


Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCC-------------------CCCcHHHHHHHHcCCCCCcceee
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIE----LIITCSESGID-------------------FGKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~-------------------~~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      .|+.+++.+||+++ |+++++||    .+++++.++++                   ..+..+.+|+..||++ . ++++
T Consensus        82 rL~leaa~eALedA-Gi~~~~i~~~~~Gv~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-Ps~t  158 (965)
T 3hhd_A           82 RLLLEVTYEAIVDG-GINPDSLRGTHTGVWVGVSGSETSEALSRDPETLVGYSMVGCQRAMMANRLSFFFDFR-G-PSIA  158 (965)
T ss_dssp             HHHHHHHHHHHHHT-TCCGGGGTTSCCEEEEEECCCHHHHHHTSCTTTCCTHHHHHHSTTHHHHHHHHHHTCC-S-CEEE
T ss_pred             HHHHHHHHHHHHHc-CCChHHcCCceeEEEEeccchhHHHHHhcCccccCcccccccccchHHHHHHHHhCCC-C-Ceee
Confidence            79999999999997 99999999    78888765543                   2245788999999994 3 8999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcccccccccc--cccccccceeEEEE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDKNELTMEWA--FFEPSGGAGAVAML  176 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~~~~~~~~~--~~~~~~GDGAaA~l  176 (245)
                      |+.+|+|++.||++|.+.|++|.+  +.+|+.++|.++...           .++.  +..++.  ...+++||||++++
T Consensus       159 vdtACSSsl~Al~~A~~~I~~G~~--d~aLagGv~~~~~p~~~~~~~~~~~ls~~g--~~~~Fd~~adG~~~gEGagavv  234 (965)
T 3hhd_A          159 LDTACSSSLMALQNAYQAIHSGQC--PAAIVGGINVLLKPNTSVQFLRLGMLSPEG--TCKAFDTAGNGYCRSEGVVAVL  234 (965)
T ss_dssp             EECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCCHHHHHHHHHHTCBCTTC--CCCTTBTTCCSBCBBCEEEEEE
T ss_pred             ecCchHHHHHHHHHHHHHHHcCCC--CEEEEeeeccccCHHHHHHHHhccCcCCCC--ccccchhccCCccccceEEEEE
Confidence            999999999999999999999977  999999999875321           1111  111111  12467999999999


Q ss_pred             ecCC
Q psy2407         177 ISDK  180 (245)
Q Consensus       177 l~~~  180 (245)
                      |++.
T Consensus       235 L~~l  238 (965)
T 3hhd_A          235 LTKK  238 (965)
T ss_dssp             EEEG
T ss_pred             EecH
Confidence            9863

>2hg4_A DEBS, 6-deoxyerythronolide B synthase; ketosynthase, acyltransferase, module 5, transferase; 2.73A {Saccharopolyspora erythraea}

Probab=99.45  E-value=2.9e-12  Score=126.29  Aligned_cols=122  Identities=14%  Similarity=0.064  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCCCC-------------------CcHHHHHHHHcCCCCCcce
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGIDFG-------------------KSMSTYIHHYLGLNRNCRL  107 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~~-------------------p~~a~~l~~~LGl~~~~~~  107 (245)
                      ...|+.+++.+||+++ |+++++||.    |++++.++++..                   ...+..|+..||+. . ++
T Consensus       116 ~~rl~leaa~eALedA-Gi~~~~i~~~~~gV~vG~~~~d~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~lgl~-G-ps  192 (917)
T 2hg4_A          116 QQRIMLEISWEALERA-GHDPVSLRGSATGVFTGVGTVDYGPRPDEAPDEVLGYVGTGTASSVASGRVAYCLGLE-G-PA  192 (917)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCGGGGTTSCEEEEEEECCCCCSCCTTSSCGGGGGGHHHHHCHHHHHHHHHHHHTCC-S-CE
T ss_pred             HHHHHHHHHHHHHHHc-CCChHHcCCcceEEEEEeCCchhhhhhhcCccccCcccccccccchHHHHHHHhcCCC-C-Ce
Confidence            5689999999999997 999999985    788877765531                   13578899999994 4 89


Q ss_pred             eeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc-----------Ccccccccccc--cccccccceeEE
Q psy2407         108 FELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT-----------EDKNELTMEWA--FFEPSGGAGAVA  174 (245)
Q Consensus       108 ~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~-----------~~~~~~~~~~~--~~~~~~GDGAaA  174 (245)
                      ++|+.+|+|++.||+.|.+.|++|.+  +.+||+++|.++....           ++.  +..++.  ...+++||||+|
T Consensus       193 ~tv~taCsSsl~Al~~A~~~I~~G~~--d~aLvgGv~~~~~p~~~~~~~~~~~ls~~g--~~~pFd~~adG~~~gEGaga  268 (917)
T 2hg4_A          193 MTVDTACSSGLTALHLAMESLRRDEC--GLALAGGVTVMSSPGAFTEFRSQGGLAADG--RCKPFSKAADGFGLAEGAGV  268 (917)
T ss_dssp             EEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSTHHHHHHTTSSCBCTTS--CCCTTBTTCCCBCBBCEEEE
T ss_pred             EeecCCcHHHHHHHHHHHHHHHcCCC--CEEEEeEeccccChhhhHhhhhccCcCCcc--ccCcccccccCCCCcceEEE
Confidence            99999999999999999999999977  9999999998765321           111  111111  124679999999


Q ss_pred             EEecC
Q psy2407         175 MLISD  179 (245)
Q Consensus       175 ~ll~~  179 (245)
                      +||++
T Consensus       269 vVL~~  273 (917)
T 2hg4_A          269 LVLQR  273 (917)
T ss_dssp             EEEEE
T ss_pred             EEEee
Confidence            99975

>1tqy_B Actinorhodin polyketide putative beta-ketoacyl SY; alpha-beta-alpha-beta-alpha, heterodimer, transferase; 2.00A {Streptomyces coelicolor} SCOP: c.95.1.1 c.95.1.1

Probab=99.43  E-value=1e-12  Score=118.90  Aligned_cols=169  Identities=13%  Similarity=0.064  Sum_probs=117.1

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC-----hHH----Hh-h-cc-cee---eeecCC-----CCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD-----TVR----FE-N-LL-MQQ---KSVSLP-----YEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~-----~~~----~~-~-~G-i~~---r~~~~~-----~e~~~~la~~Aa   59 (245)
                      +.|.|.|+|...|... +.+++.+.+  |.+     +.+    +. + .| +..   ..+..+     -.....|+.+|+
T Consensus         9 ~~v~I~G~g~~~p~g~-~~~~~w~~l~~g~~~i~~~~~~~~~~~~~~~~~~v~~fd~~~~~~~~~~~~~d~~~~l~l~aa   87 (415)
T 1tqy_B            9 KSVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAA   87 (415)
T ss_dssp             -CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHH
T ss_pred             CCEEEEeeEEECCCCC-CHHHHHHHHHcCCCcEEECCcccccCCCcceEEEeCCCCchhcCCHHHHHhcCHHHHHHHHHH
Confidence            4689999999999984 666665432  211     010    00 0 01 100   000111     123578999999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC--------------------------CCCcHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID--------------------------FGKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~--------------------------~~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++||    .|++++.++++                          ..+..+.+|+..||++  .++++
T Consensus        88 ~~AL~dA-Gl~~~~id~~~~gv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~lgl~--gp~~~  164 (415)
T 1tqy_B           88 DWALQDA-KADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMR--GPSSA  164 (415)
T ss_dssp             HHHHHHT-TCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCC--SSCEE
T ss_pred             HHHHHHc-CCCccccCCCCEEEEEeeCCccHHHHHHHHHHHHhcCcccCChhhhhcccchHHHHHHHHHhCCC--CceEe
Confidence            9999997 99999999    88888875432                          2356789999999994  38999


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------cc----Cccccccccccc--cccccccee
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VT----EDKNELTMEWAF--FEPSGGAGA  172 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~----~~~~~~~~~~~~--~~~~~GDGA  172 (245)
                      ++.+|+|++.||..|.++|++| +  +.+||+++|.+ +..          +.    ++.  +..++..  ..+++||||
T Consensus       165 v~~aCsS~l~Al~~A~~~I~~G-~--d~~LvgG~e~~~~~~~~~~~~~~~~ls~~~~~~~--~~~pfd~~~~G~~~geGa  239 (415)
T 1tqy_B          165 LVAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSALDPWGWVSQIASGRISTATDPDR--AYLPFDERAAGYVPGEGG  239 (415)
T ss_dssp             EECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECCCSHHHHHHHHTTSCBCCCSCGGG--SCCTTSTTCCCBCBBCEE
T ss_pred             ecCCccHHHHHHHHHHHHHHcC-C--CEEEEeeecCcCCHHHHHHHHhccCccCCCCCCC--CcCCCCCCCCCcceeeeE
Confidence            9999999999999999999999 9  99999999983 321          11    111  1112211  246799999


Q ss_pred             EEEEecC
Q psy2407         173 VAMLISD  179 (245)
Q Consensus       173 aA~ll~~  179 (245)
                      +|+||++
T Consensus       240 aavvL~~  246 (415)
T 1tqy_B          240 AILVLED  246 (415)
T ss_dssp             EEEEEEE
T ss_pred             EEEEECc
Confidence            9999975

>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*

Probab=99.39  E-value=1.5e-12  Score=117.03  Aligned_cols=99  Identities=10%  Similarity=0.094  Sum_probs=89.9

Q ss_pred             CCCCHHHHHHHHHHHHHHhcC-CCCcCCcCEEEEEeccCCCC-CCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          47 PYEDPVSFAINAAAPLIDNLS-NIDKNSIELIITCSESGIDF-GKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~-g~~~~dId~li~~t~~~~~~-~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      .+++..+|+.+|+++||++ + |+++++||.+++++.++++. .+..+..++..||+++..++++++.+|+|++.+|..|
T Consensus        26 ~~~~~~~L~~~a~~~AL~d-A~gl~~~~id~v~~g~~~~~~~~~~~~a~~ia~~lgl~~~~p~~~v~~aCaS~~~Al~~A  104 (390)
T 1wdk_C           26 RNTRAEDMSAHLISKVLER-NSKVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHTA  104 (390)
T ss_dssp             TTCCHHHHHHHHHHHHHHH-CTTSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSSCTTSEEEEEECGGGHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHh-ccCCCHHHCCEEEEEeeccccCCCCcHHHHHHHHcCCCCCccEEEEcccchhHHHHHHHH
Confidence            4788999999999999999 8 99999999999998877554 3788999999999966789999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      ..+|++|.+  +.+||+++|.++.
T Consensus       105 ~~~I~~G~~--d~vlvgG~e~~s~  126 (390)
T 1wdk_C          105 AQAIMTGNG--DVFVVGGVEHMGH  126 (390)
T ss_dssp             HHHHHTTSC--SEEEEEEEEETTT
T ss_pred             HHHHHcCCC--CEEEEeeeecccc
Confidence            999999977  9999999998754

>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis}

Probab=98.97  E-value=7.6e-10  Score=102.84  Aligned_cols=98  Identities=10%  Similarity=0.037  Sum_probs=80.8

Q ss_pred             CCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccC------------CCCCCcHHHHHHHHcCCCCCcceeeecCcc
Q psy2407          47 PYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESG------------IDFGKSMSTYIHHYLGLNRNCRLFELKQAC  114 (245)
Q Consensus        47 ~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~------------~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C  114 (245)
                      .+.++.||+.+|+++||+++ |+++++||.+|.+....            ....+..+..++..||++ ..+++.++++|
T Consensus        38 ~~~s~~dL~a~Ai~~AL~dA-Gl~p~~Vd~vI~g~~~~~~~~~~~~~~~~~g~~~~~~~~va~~lGl~-~~~~~~~~~~c  115 (520)
T 4egv_A           38 RGMSSVELATEAAKAALHDC-GADADTVARAIDTVAGTRQFEISGPASAPLGVSSNYPRSVARNIGAD-PAHAVLEVIGG  115 (520)
T ss_dssp             -CCCHHHHHHHHHHHHHHHT-SSCHHHHHHHCCEEEECCC--------------CCHHHHHHHHHTCC-CSEEEECCSST
T ss_pred             CCCCHHHHHHHHHHHHHHHh-CcCHHHcceEEEEEeecccccccchhhhhhccccCHHHHHHHHcCCC-CceEEEecCCC
Confidence            46789999999999999997 99999988776543221            112356788999999995 57788889999


Q ss_pred             hhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccc
Q psy2407         115 YSCTAGLQMAINFILSKVSPGAKALVIATDISRF  148 (245)
Q Consensus       115 ~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~  148 (245)
                      +|++.++..|.+.|++|.+  +.+|+++.|++|.
T Consensus       116 aSg~~av~~AA~aI~aG~a--dvvlAgG~EsMS~  147 (520)
T 4egv_A          116 QSPQHLATEFGGKIAAGEN--DVVLIFGSENTST  147 (520)
T ss_dssp             THHHHHHHHHHHHHHTTSC--SEEEEEEEECCC-
T ss_pred             HHHHHHHHHHHHHHHcCCC--CEEEEEEEEeccc
Confidence            9999999999999999977  9999999999975

>3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A*

Probab=98.87  E-value=3.1e-08  Score=106.91  Aligned_cols=123  Identities=10%  Similarity=0.066  Sum_probs=89.5

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcC--------EEEEEeccCC------------------------CCCCcHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIE--------LIITCSESGI------------------------DFGKSMSTYIHH   97 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId--------~li~~t~~~~------------------------~~~p~~a~~l~~   97 (245)
                      ....|+.+|+.+||+++ |+++++|+        .+++++..+.                        ......+..+..
T Consensus      2646 p~~rL~l~aa~eALedA-Gi~p~~l~~~~~~~~vGV~vG~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~is~ 2724 (3089)
T 3zen_D         2646 RVALWNIVATVDAFLSS-GFTPTELMRWVHPSQVASTQGTGMGGMTSMQTMYHGNLLGRAKPNDILQEVLPNVVAAHVMQ 2724 (3089)
T ss_dssp             HHHHHHHHHHHHHHTTS-CSCGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHHHHHTTCCCCTTHHHHTSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCCHHHhhcccCcceeEEEEeecCccHHHHHHHHHHHhcCCCccchhhccccccHHHHHHHH
Confidence            36789999999999997 99999885        5677664321                        011234555554


Q ss_pred             -HcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc---------------------cCccc
Q psy2407          98 -YLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV---------------------TEDKN  155 (245)
Q Consensus        98 -~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~---------------------~~~~~  155 (245)
                       .||+.  .++++++.+|+|++.||+.|.++|++|.+  +.+|++++|.++...                     ++.. 
T Consensus      2725 ~~lGl~--GPs~tV~tACSSsl~Al~~A~~~IrsG~~--d~aLaGGve~ls~~~~~~f~~~~als~~~~~~~~~~sp~~- 2799 (3089)
T 3zen_D         2725 SYVGGY--GAMVHPVGACATAAVSVEEGVDKIKLGKA--DLVIAGGFDDLTLEAIIGFGDMAATADTEMMRAKGISDSK- 2799 (3089)
T ss_dssp             HTTCCC--SCEECCBCTTCHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHHTCBCCHHHHHHTTCCTTT-
T ss_pred             HHcCCC--CCceeeccchhhHHHHHHHHHHHHHCCCC--CeeEEeeecccCHHHHHHHHHhhhhhcchhhhhccCCccc-
Confidence             56994  48999999999999999999999999977  999999999875421                     0011 


Q ss_pred             ccccccc--cccccccceeEEEEecC
Q psy2407         156 ELTMEWA--FFEPSGGAGAVAMLISD  179 (245)
Q Consensus       156 ~~~~~~~--~~~~~~GDGAaA~ll~~  179 (245)
                       +..++.  -..+++||||+++||.+
T Consensus      2800 -~crpFd~~~dG~v~GEGAgavVL~~ 2824 (3089)
T 3zen_D         2800 -FSRANDRRRLGFLEAQGGGTILLAR 2824 (3089)
T ss_dssp             -SCCSSBTTCCCBCBBCEEEEEEEEE
T ss_pred             -ccCccccCCCCEEEeccceEEEEee
Confidence             111111  11356899999999985

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.59  E-value=1.3e-06  Score=93.98  Aligned_cols=170  Identities=14%  Similarity=0.097  Sum_probs=112.4

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC------hHH----Hh---hcc-cee-eeecCCC------------CCH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD------TVR----FE---NLL-MQQ-KSVSLPY------------EDP   51 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~------~~~----~~---~~G-i~~-r~~~~~~------------e~~   51 (245)
                      |..|.|.|+|+-+|.. .+.+++.+.+  |.+      ..|    ..   +.| +.. ..+ ++.            ...
T Consensus         1 m~~iaI~G~~~~~p~~-~~~~~~w~~l~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~f-d~~~f~i~~~ea~~~dpq   78 (2512)
T 2vz8_A            1 MEEVVIAGMSGKLPES-ENLEEFWANLIGGVDMVTADDRRWKAGLYGLPRRMGKLKDLSRF-DASFFGVHSKQANTMDPQ   78 (2512)
T ss_dssp             CCCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECSSSSCTTGGGCCSEEECCSCSSCC-CTTTTTCCHHHHHTSCHH
T ss_pred             CCCEEEEeeeeeCCCC-CCHHHHHHHHHcCCccccCCCcccccccccCcccceecCCcccC-CHhhcCCCHHHHHhcCHH
Confidence            6789999999999985 5667665543  211      111    00   011 000 000 110            124


Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcC----EEEEEeccCCC----------C----C-----CcHHHHHHHHcCCCCCccee
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIE----LIITCSESGID----------F----G-----KSMSTYIHHYLGLNRNCRLF  108 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId----~li~~t~~~~~----------~----~-----p~~a~~l~~~LGl~~~~~~~  108 (245)
                      ..|+.+++.+||+++ |+++++++    .|++++.+.++          .    .     ...+.+|...+|+.  -|++
T Consensus        79 ~rl~l~~~~eAle~A-g~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~ris~~~~l~--Gps~  155 (2512)
T 2vz8_A           79 LRMLLEVTYEAIVDG-GINPASLRGTSTGVWVGVSSSDASEALSRDPETLVGYSMIGCQRAMMANRLSFFFDFK--GPSI  155 (2512)
T ss_dssp             HHHHHHHHHHHHGGG-TCCGGGGTTCSCEEEEEECCCHHHHHTTSCTTTSCGGGGGGTSTTHHHHHHHHHHTCC--SCEE
T ss_pred             HHHHHHHHHHHHHHC-CCChhhcCCCCeEEEEEeccHHHHHHHhcCccccCcceecccchhHHHHHHHHHhCCC--CCce
Confidence            578999999999997 99875543    45566543321          0    0     13578999999994  4889


Q ss_pred             eecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCccccccccccc--ccccccceeEEE
Q psy2407         109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTEDKNELTMEWAF--FEPSGGAGAVAM  175 (245)
Q Consensus       109 dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~~~~~~~~~~~--~~~~~GDGAaA~  175 (245)
                      .|..+|+|++.||+.|.+.|++|.+  +.+|+.+++.....           +.+++  +..++..  ..+..|+|++++
T Consensus       156 tv~tACsSsl~Al~~A~~~l~~g~~--d~al~gG~~~~~~p~~~~~~~~~~~ls~~g--~c~~Fd~~adG~~~gEG~~~~  231 (2512)
T 2vz8_A          156 TIDTACSSSLLALQSAYQAIRGGEC--SAAVVGGLNVLLKPNSSLQFMKLGMLSQDG--TCRSFDAEGTGYCRAEAVVAV  231 (2512)
T ss_dssp             EEECTTSTHHHHHHHHHHHHHTSSC--SEEEEEEEECCCCHHHHHHHHHTTCBCTTC--SCCSSSTTCCCBCBBCEEEEE
T ss_pred             eeccHhHHHHHHHHHHHHHHHcCCC--CeeEEeEeccccCHHHHHHHccCCCCCCCC--CCCCCCCCCCCcceeeeEEEE
Confidence            9999999999999999999999977  99999999975332           11111  2222221  246799999999


Q ss_pred             EecC
Q psy2407         176 LISD  179 (245)
Q Consensus       176 ll~~  179 (245)
                      +|.+
T Consensus       232 vLk~  235 (2512)
T 2vz8_A          232 LLTK  235 (2512)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9986

>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty acid synthase, acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}

Probab=98.55  E-value=3.8e-08  Score=99.54  Aligned_cols=122  Identities=14%  Similarity=0.058  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCC-cCCc----C----EEEEEeccCCC------------------------CCCcHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNID-KNSI----E----LIITCSESGID------------------------FGKSMSTYIHH   97 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~-~~dI----d----~li~~t~~~~~------------------------~~p~~a~~l~~   97 (245)
                      ...|+.+++.+||+++ |++ |.++    +    .+++++..+.+                        .....+.++..
T Consensus      1012 ~qrLaLeAa~EALedA-GI~dP~ei~~~i~~s~vGV~vGSg~Gg~~~l~~~~~~~~~~~~v~~~~l~~~~~nt~Aa~Vs~ 1090 (1688)
T 2pff_A         1012 ITLFVLVSVVEAFIAS-GITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNM 1090 (1688)
T ss_dssp             STTHHHHHHHHHHTTT-TCSSGGGGGGGTCCSCSCCCCCCCSCCCSSHHHHHHSSSSCCCCCSTTHHHHCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCChHHhccccCCceEEEEecccCCCHHHHHHHHHHHHhcCCCCcchhccccHHHHHHHHHH
Confidence            4569999999999997 997 5442    1    34444443321                        11234566666


Q ss_pred             -HcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc---------------------Cccc
Q psy2407          98 -YLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT---------------------EDKN  155 (245)
Q Consensus        98 -~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~---------------------~~~~  155 (245)
                       .||+.  -|++.+..+|+|++.||..|...|++|.+  +.+||.++|.++....                     ++. 
T Consensus      1091 ~~LGl~--GPs~TVdtACASSL~AL~lA~~aIrsGea--DvaLVGGvE~msp~~~~~Fa~mgaLS~~~~e~a~G~~Pd~- 1165 (1688)
T 2pff_A         1091 LLISSS--GPIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAE- 1165 (1688)
T ss_dssp             SSCCCC--CCCCCCCCTTTTTHHHHHHHHHHHHTTTC--SCBCCCCCCCCCTTTTTTTTTTSCSCCTTTTTTSSCCSSS-
T ss_pred             HHcCCc--CCeEEecCCCchHHHHHHHHHHHHHCCCC--CEEEEeeeccCCHHHHHHHHhccccccChhhhhcCCChhh-
Confidence             69984  48999999999999999999999999977  9999999998654211                     111 


Q ss_pred             ccccccc--cccccccceeEEEEecC
Q psy2407         156 ELTMEWA--FFEPSGGAGAVAMLISD  179 (245)
Q Consensus       156 ~~~~~~~--~~~~~~GDGAaA~ll~~  179 (245)
                       +..++.  -..+++||||+++||.+
T Consensus      1166 -~cRPFd~~rdGfv~GEGAGavVLes 1190 (1688)
T 2pff_A         1166 -MSRPATTTRNGFMEAQGAGIQIIMQ 1190 (1688)
T ss_dssp             -SCCSSSSSCCCCCCCSCCEEEEEEC
T ss_pred             -ccCcCccCCCCCccccceEEEEeCc
Confidence             111111  12467999999999986

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A*

Probab=98.24  E-value=3.7e-06  Score=87.35  Aligned_cols=122  Identities=14%  Similarity=0.068  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHhcCCCC-cCCc----C----EEEEEeccCC----------C--------------CCCcHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNID-KNSI----E----LIITCSESGI----------D--------------FGKSMSTYIHH   97 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~-~~dI----d----~li~~t~~~~----------~--------------~~p~~a~~l~~   97 (245)
                      ...|+.+++.+||+++ |++ +.++    +    .+++++..+.          .              .....+.++..
T Consensus      1211 ~~~l~L~aa~eAL~dA-Gi~dp~e~~~~i~~s~vGv~vGs~~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~is~ 1289 (1887)
T 2uv8_A         1211 ITLFVLVSVVEAFIAS-GITDPYEMYKYVHVSEVGNCSGSGMGGVSALRGMFKDRFKDEPVQNDILQESFINTMSAWVNM 1289 (1887)
T ss_dssp             HHHHHHHHHHHHHHHT-TCSSGGGHHHHSCGGGEEECCEESSCCHHHHHHHHTTTTTTCCCCTTHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHc-CCCChhhhhcccCCceeEEEeccCCccHHHHHHHHHHHHhcCCCCcchhhcchhhHHHHHHHH
Confidence            4569999999999997 994 6662    2    4455554321          0              12235667777


Q ss_pred             -HcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc---------------------Cccc
Q psy2407          98 -YLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT---------------------EDKN  155 (245)
Q Consensus        98 -~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~---------------------~~~~  155 (245)
                       .||+.  -|++.+..+|++++.||+.|...|++|.+  +.+||.++|.++....                     +.. 
T Consensus      1290 ~~lgl~--GP~~tv~tACASsl~Al~~A~~~I~sG~a--dvaLvGGvd~~~~~~~~~f~~m~als~~~~e~~~g~~p~~- 1364 (1887)
T 2uv8_A         1290 LLISSS--GPIKTPVGACATSVESVDIGVETILSGKA--RICIVGGYDDFQEEGSFEFGNMKATSNTLEEFEHGRTPAE- 1364 (1887)
T ss_dssp             HTTCCC--SCCCCCCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCHHHHHHTTCCGGG-
T ss_pred             HHcCCc--cceEEeecccccHHHHHHHHHHHHHcCCC--CEEEEeeeccCChHHHHHHHHhhhhccchhhhcccCCCcc-
Confidence             49994  38899999999999999999999999977  9999999998643210                     111 


Q ss_pred             cccccccc--ccccccceeEEEEecC
Q psy2407         156 ELTMEWAF--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       156 ~~~~~~~~--~~~~~GDGAaA~ll~~  179 (245)
                       +..++..  ..++.||||+++||.+
T Consensus      1365 -~~RPfd~~r~Gfv~gEGag~vVL~~ 1389 (1887)
T 2uv8_A         1365 -MSRPATTTRNGFMEAQGAGIQIIMQ 1389 (1887)
T ss_dssp             -SCCTTBTTCCSBCBBCEEEEEEEEE
T ss_pred             -CcCCCcccCCCcccccceEEEEEcc
Confidence             1112111  1356899999999975

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A*

Probab=98.19  E-value=6.4e-06  Score=85.52  Aligned_cols=122  Identities=13%  Similarity=0.057  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHHHHHhcCCCC-cCCc----C----EEEEEeccCC-------------------CC-----CCcHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNID-KNSI----E----LIITCSESGI-------------------DF-----GKSMSTYIHH   97 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~-~~dI----d----~li~~t~~~~-------------------~~-----~p~~a~~l~~   97 (245)
                      ...|+.+++.+||+++ |++ |.++    +    .+++++..+.                   +.     ...++.+|..
T Consensus      1186 ~~~l~L~aa~eAL~~A-Gi~~p~e~~~~i~~s~vGv~vGsg~gg~~~~~~~~~~~~~~~~v~~~~~~~~~~n~~aa~vs~ 1264 (1878)
T 2uv9_A         1186 VTLYVLVSVAEALLSS-GITDPYEFYKYVHLSEVGNCIGSGVGGTSALRGMYKDRYLDKPVQKDILQESFVNTMAAWVNM 1264 (1878)
T ss_dssp             HHHHHHHHHHHHHHTT-TCSSGGGHHHHSCGGGEEEEEEESSCCHHHHHHHHTTTTTTCCCCSCTTGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCChhhhhcccCccceEEEEccCCccHHHHHHHHHHHHhcCCCCchhhhcchHHHHHHHHHH
Confidence            4568999999999997 998 6652    2    4555554332                   01     1134667777


Q ss_pred             -HcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccc---------------------Cccc
Q psy2407          98 -YLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVT---------------------EDKN  155 (245)
Q Consensus        98 -~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~---------------------~~~~  155 (245)
                       .||+.  -|.+.+..+|++++.+|+.|...|++|.+  +.+||.++|.++....                     ++. 
T Consensus      1265 ~~lg~~--GP~~tv~tACASsl~Al~~A~~~I~sG~a--dvalvGGvd~~~~~~~~~f~~m~als~~~de~a~g~~p~~- 1339 (1878)
T 2uv9_A         1265 LLLSST--GPIKTPVGACATAVESLDVGYDTIMQGKA--RVCLVGGFDDFQEEGSYEFANMGATSNAKEEFARGREPGE- 1339 (1878)
T ss_dssp             HTCCCC--CCBCCBCCGGGHHHHHHHHHHHHHTTTSC--SEEEEEEEECCCHHHHHHHHHHTCBCCHHHHHTTTCCTTS-
T ss_pred             HhcCCC--CCeEEEcCcchHHHHHHHHHHHHHHcCCC--CEEEEeeeccCChHHHHHHHHhhhhccchhhhhcCCCccc-
Confidence             49994  38899999999999999999999999977  9999999998653210                     111 


Q ss_pred             cccccccc--ccccccceeEEEEecC
Q psy2407         156 ELTMEWAF--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       156 ~~~~~~~~--~~~~~GDGAaA~ll~~  179 (245)
                       +..++..  ..++.|+||+++||.+
T Consensus      1340 -~~RPfd~~r~Gfv~gEGag~vVL~~ 1364 (1878)
T 2uv9_A         1340 -MSRPTSTTRNGFMESQGCGVQVIMT 1364 (1878)
T ss_dssp             -SCCSSBTTCCCBCBBCEEEEEEEEE
T ss_pred             -CcCCCccCCCCCcccceeEEEEEee
Confidence             1111111  2367999999999976

>2x3e_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; HED, transferase, acyltransferase, lipid synthesis, multifun enzyme; 1.81A {Pseudomonas aeruginosa}

Probab=95.20  E-value=0.051  Score=46.81  Aligned_cols=82  Identities=7%  Similarity=0.101  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---ec-CcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---LK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v~-~~C~~~~~aL~~A~~~i  128 (245)
                      +...++.+++|+++ |++++|||.++.....     ...-..+.+.||++++.....   ++ .++++...+|..   ++
T Consensus       224 ~~~~~~i~~aL~~a-gl~~~did~~~~H~~~-----~~~~d~~~~~lg~~~~~~~~~~~~~Gnt~sAs~~~~L~~---~~  294 (331)
T 2x3e_A          224 TQMSDSVRRVLDRV-GWQASDLHHLVPHQAN-----TRILAAVADQLDLPVERVVSNIAEVGNTVAASIPLALAH---GL  294 (331)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCSEEEECCCC-----HHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEEcCCC-----HHHHHHHHHHcCCCHHHHhhhHhhhCcHHHHHHHHHHHH---HH
Confidence            45677889999997 9999999998864332     233446889999964322222   32 366666666643   44


Q ss_pred             hcCCC-CCCeEEEEEe
Q psy2407         129 LSKVS-PGAKALVIAT  143 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~  143 (245)
                      +.+.. +++++|+++.
T Consensus       295 ~~~~~~~G~~vll~~~  310 (331)
T 2x3e_A          295 RQGILRDGGNMVLTGF  310 (331)
T ss_dssp             HTTCSCTTCEEEEEEE
T ss_pred             HhCCCCCCCEEEEEEE
Confidence            55422 4567777644

>3lma_A Stage V sporulation protein AD (spovad); NESG, structural genomics, PSI-2, protein structure initiative; 1.99A {Bacillus licheniformis} PDB: 3lm6_A

Probab=95.18  E-value=0.052  Score=47.42  Aligned_cols=87  Identities=20%  Similarity=0.242  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeee-cC--------cchhH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFEL-KQ--------ACYSC  117 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv-~~--------~C~~~  117 (245)
                      .+++...+.|+++ |++++|+|.|+.+--.  +..-.+...+.+++|++..       .+.||- ++        ||+.-
T Consensus       208 aA~~ti~~~l~d~-g~~~~d~D~ivtgdL~--q~g~~il~~l~~~~g~~~~~~~~dcg~~iy~~~~~~~~ggsg~~csa~  284 (347)
T 3lma_A          208 AAADTIKQHLEDL-GRTPDDYDLILTGDLS--GVGSPILKDLLKEEGINVGTKHNDCGLMIYTPDQQVFAGGSGCACSAV  284 (347)
T ss_dssp             HHHHHHHHHHHHH-TCCGGGCSEEEEESCH--HHHHHHHHHHHHHTTCCCGGGEEEGGGTSSCC---------CCCCHHH
T ss_pred             HHHHHHHHHHHHh-CCCHHHcCEEecCChH--HHHHHHHHHHHHHcCCChhHCccccceEEecCCCcccCCCCccccHHH
Confidence            3445558999997 9999999999842110  1112456677888898642       223443 24        67666


Q ss_pred             HHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407         118 TAGLQMAINFILSKVSPGAKALVIATDIS  146 (245)
Q Consensus       118 ~~aL~~A~~~i~sg~~~~~~aLVv~~e~~  146 (245)
                      +..=.+-.. ++.|.+  +++|+|+.-..
T Consensus       285 v~~~~~~~~-~~~g~~--~ril~~~tGal  310 (347)
T 3lma_A          285 VTFAHIFKE-IEAGRL--NRVLVVATGAL  310 (347)
T ss_dssp             HHHHTHHHH-HHTTSC--SEEEEEEEEEC
T ss_pred             HHHHHHHHH-HhcCcc--cEEEEEecccc
Confidence            555444333 677877  99999987665

>1mzj_A Beta-ketoacylsynthase III; beta-ketosynthase, aromatic polyketide, biosynthetic engineering, catalytic triad, transferase; HET: COA; 2.10A {Streptomyces SP} SCOP: c.95.1.2 c.95.1.2

Probab=95.00  E-value=0.079  Score=45.73  Aligned_cols=82  Identities=13%  Similarity=0.144  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cceee---ec-CcchhHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFE---LK-QACYSCTAGLQMAINF  127 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~d---v~-~~C~~~~~aL~~A~~~  127 (245)
                      +...++.+++|+++ |++++|||.++.....     ...-..+.+.||++.. .....   ++ .++++...+|..   +
T Consensus       231 ~~~~~~i~~aL~~a-gl~~~did~v~~H~~~-----~~~~d~i~~~lg~~~~~~~~~~~~~~Gn~~sAs~~~~L~~---~  301 (339)
T 1mzj_A          231 ADVVPAAREALEVA-GLTVGDLVAFVPHQAN-----LRIIDVLVDRLGVPEHVVVSRDAEDTGNTSSASVALALDR---L  301 (339)
T ss_dssp             HHHHHHHHHHHHTT-TCCGGGCSEEEECCSC-----HHHHHHHHHHHTCCTTSEECCTHHHHCBCTTHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEECCCC-----HHHHHHHHHHhCCCccceeeehhhhcCchHHHHHHHHHHH---H
Confidence            45677889999997 9999999998864332     1233468899999654 22222   32 366666666644   4


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.|.. +++++|+++.
T Consensus       302 ~~~g~~~~G~~vll~~~  318 (339)
T 1mzj_A          302 VRSGAVPGGGPALMIGF  318 (339)
T ss_dssp             HHHTSSCTTCEEEEEEE
T ss_pred             HHcCCCCCCCEEEEEEE
Confidence            444422 4467776643

>3s21_A 3-oxoacyl-[ACP] synthase III; non-decarboxylative claisen condensation reaction, transfera; HET: CER; 1.70A {Xanthomonas campestris PV} PDB: 3s23_A* 3row_A 3s1z_A 3s20_A* 3fk5_A

Probab=94.99  E-value=0.076  Score=46.10  Aligned_cols=83  Identities=7%  Similarity=0.017  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~i  128 (245)
                      ....++++++|+++ |++++|||.++....     .+.+-..+++.||+++......+    |.++++-..+|..+   +
T Consensus       246 ~~~~~~i~~~l~~~-gl~~~did~~v~Hq~-----~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~~---~  316 (345)
T 3s21_A          246 KLAQKTFVAAKQVL-GWAVEELDQFVIHQV-----SRPHTAAFVKSFGIDPAKVMTIFGEHGNIGPASVPIVLSKL---K  316 (345)
T ss_dssp             HHHHHHHHHHHHHH-CCCGGGCSEEEECCS-----CHHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEeCCC-----CHHHHHHHHHHcCcCHHHceeeHhhcCchHHHHHHHHHHHH---H
Confidence            34557778999997 999999999986432     23456788899999754332222    23666666666543   3


Q ss_pred             hcCCC-CCCeEEEEEec
Q psy2407         129 LSKVS-PGAKALVIATD  144 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~e  144 (245)
                      +.|.. +++++|+++.-
T Consensus       317 ~~g~~~~Gd~vll~~~G  333 (345)
T 3s21_A          317 ELGRLKKGDRIALLGIG  333 (345)
T ss_dssp             HHTCCCTTCEEEEEEEE
T ss_pred             HcCCCCCCCEEEEEEEC
Confidence            44322 45777777643

>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}

Probab=94.97  E-value=0.093  Score=45.22  Aligned_cols=82  Identities=15%  Similarity=0.115  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~i  128 (245)
                      ....++++++|+++ |++++|||.++....     .+.+-..+++.||+++......+    |.++++-..+|..   ++
T Consensus       224 ~~~~~~i~~~l~~~-gl~~~did~~v~Hq~-----~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~---~~  294 (323)
T 3il3_A          224 RELSNVVEETLLAN-NLDKKDLDWLVPHQA-----NLRIITATAKKLEMDMSQVVVTLDKYANNSAATVPVALDE---AI  294 (323)
T ss_dssp             HHHHHHHHHHHHTT-TCCTTTCCEEEECCS-----CHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEEcCC-----CHHHHHHHHHHcCcCHHHhhccHhhcCchHHHHHHHHHHH---HH
Confidence            44567788999996 999999999875432     33556788999999755433333    2355555556544   44


Q ss_pred             hcCCC-CCCeEEEEEe
Q psy2407         129 LSKVS-PGAKALVIAT  143 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~  143 (245)
                      +.|.. +++++|+++.
T Consensus       295 ~~g~~~~Gd~vll~~~  310 (323)
T 3il3_A          295 RDGRIQRGQLLLLEAF  310 (323)
T ss_dssp             HTTSSCTTCEEEEEEE
T ss_pred             HcCCCCCCCEEEEEEE
Confidence            55432 4577777754

>4dfe_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; ssgcid, seattle structural genomics center for infectious DI transferase; 2.35A {Burkholderia xenovorans}

Probab=94.85  E-value=0.08  Score=45.68  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~i  128 (245)
                      +...++++++|+++ |++++|||.++....     .+.+-..+++.||++++.....+    |.++++-..+|..   ++
T Consensus       234 ~~~~~~i~~~l~~~-gl~~~did~~~~Hq~-----~~~i~~~~~~~lgl~~~~~~~~l~~~GNt~sasi~~~L~~---~~  304 (333)
T 4dfe_A          234 NVLEKVAVEALEKA-NLSAEQIDWLIPHQA-----NIRIMQSTCRKLGLPQERMIVTVGEHGNTSAASIPLALDV---AV  304 (333)
T ss_dssp             HHHHHHHHHHHHHT-TCCGGGCSEEEECCS-----CHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEEcCC-----CHHHHHHHHHHhCCCHHHhhhhHHhcCchHHHHHHHHHHH---HH
Confidence            55667788999997 999999999875432     23456788899999754333333    2355555555543   45


Q ss_pred             hcCCC-CCCeEEEEEe
Q psy2407         129 LSKVS-PGAKALVIAT  143 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~  143 (245)
                      +.|.. +++++|+++.
T Consensus       305 ~~g~~~~Gd~vll~~~  320 (333)
T 4dfe_A          305 RDGRIKRGQNVLIEGV  320 (333)
T ss_dssp             HTTCSCTTCEEEEEEE
T ss_pred             HcCCCCCCCEEEEEEE
Confidence            55432 4567777653

>3gwa_A 3-oxoacyl-(acyl-carrier-protein) synthase III; structural genomics, synthetase; 1.60A {Burkholderia pseudomallei} PDB: 3gwe_A

Probab=94.80  E-value=0.08  Score=46.45  Aligned_cols=83  Identities=8%  Similarity=0.077  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINF  127 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~  127 (245)
                      .....++++++|+++ |++++|||.++...     ..+.+-..+++.||+++......+   + .++++-..+|.   .+
T Consensus       265 ~~~~~~~i~~~L~~~-gl~~~did~~v~Hq-----~n~~i~~~~~~~Lgl~~ek~~~~l~~~GNtssAsipl~L~---~~  335 (365)
T 3gwa_A          265 LAEVPRAADRLLALA-GEPRENIDCFVLHQ-----ANRFMLDALRKKMKIPEHKFPVLMEHCGNTVSSTLPLALE---TM  335 (365)
T ss_dssp             HHHHHHHHHHHHHHH-TCCGGGCSEEEECC-----CCHHHHHHHHHHHTCCGGGSCCCCTTTCBCGGGHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEEcC-----CCHHHHHHHHHHhCCCHHHHHHHHhcccchHHHHHHHHHH---HH
Confidence            345567788999997 99999999998542     233556788999999755433333   2 34555554553   34


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.|.. +++++|+++.
T Consensus       336 ~~~g~~~~Gd~vll~~f  352 (365)
T 3gwa_A          336 RANGTLARGMRLMLLGF  352 (365)
T ss_dssp             HHTTCCCTTCEEEEEEE
T ss_pred             HHcCCCCCCCEEEEEEE
Confidence            555532 4577777754

>1u6e_A 3-oxoacyl-[acyl-carrier-protein] synthase III; transferase; 1.85A {Mycobacterium tuberculosis} SCOP: c.95.1.2 c.95.1.2 PDB: 1u6s_A* 1m1m_A 1hzp_A* 2qnx_A* 2qnz_A* 2qo1_A* 2qx1_A* 2qo0_A* 2qny_A* 2ahb_A 2aj9_A

Probab=94.77  E-value=0.096  Score=44.96  Aligned_cols=82  Identities=12%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-cceee---e-cCcchhHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-CRLFE---L-KQACYSCTAGLQMAINF  127 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-~~~~d---v-~~~C~~~~~aL~~A~~~  127 (245)
                      +...++++++|+++ |++++|||.++.....     ...-..+.+.||++++ .....   + +.++++...+|..   +
T Consensus       232 ~~~~~~i~~al~~a-gl~~~dId~~~~H~~~-----~~~~~~~~~~lg~~~~~~~~~~~~~~Gnt~sAs~~~~L~~---~  302 (335)
T 1u6e_A          232 FKMGDVGRRAMDAA-GVRPDQIDVFVPHQAN-----SRINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAE---L  302 (335)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCCEEEECCSC-----HHHHHHHHHHHTCCTTCEECCTHHHHCBCGGGHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEECCCC-----HHHHHHHHHHcCCCchhhhhhhhhhhCcHHHHHHHHHHHH---H
Confidence            45667889999997 9999999998864332     2334567889999654 22222   2 2355555544443   3


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.+.. +++++|+++.
T Consensus       303 ~~~~~~~~g~~~l~~~~  319 (335)
T 1u6e_A          303 LTTGAAKPGDLALLIGY  319 (335)
T ss_dssp             HHHTSSCTTCEEEEEEE
T ss_pred             HHcCCCCCCCEEEEEEE
Confidence            343321 4467777654

>1zow_A 3-oxoacyl-[acyl-carrier-protein] synthase III; FABH, fatty acid biosynthesis, transferase; 2.00A {Staphylococcus aureus subsp} PDB: 3il7_A

Probab=94.76  E-value=0.084  Score=44.86  Aligned_cols=81  Identities=10%  Similarity=0.171  Sum_probs=50.5

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---e-cCcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---L-KQACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v-~~~C~~~~~aL~~A~~~i~  129 (245)
                      -..++++++|+++ |++++|||.++.....     ...-..+.+.||++++.....   + +..+++.+.+|..   +++
T Consensus       213 ~~~~~i~~al~~a-gl~~~did~~~~H~~~-----~~~~d~~~~~lg~~~~~~~~~~~~~Gh~~~as~~~~L~~---~~~  283 (313)
T 1zow_A          213 IMGDASTRVVEKA-NLTSDDIDLFIPHQAN-----IRIMESARERLGISKDKMSVSVNKYGNTSAASIPLSIDQ---ELK  283 (313)
T ss_dssp             HHHHHHHHHHHHT-TCCGGGCSEEEECCSC-----HHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEEcCCC-----HHHHHHHHHHhCCCHHHHHHhHhhhCchHHHHHHHHHHH---HHH
Confidence            5667889999997 9999999998864332     223345788899864322222   2 2466666666644   344


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .+.. +++++|+++.
T Consensus       284 ~~~~~~g~~vl~~~~  298 (313)
T 1zow_A          284 NGKLKDDDTIVLVGF  298 (313)
T ss_dssp             TTCCCTTCEEEEEEE
T ss_pred             cCCCCCCCEEEEEEE
Confidence            4422 4567776654

>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*

Probab=94.64  E-value=0.058  Score=47.29  Aligned_cols=82  Identities=17%  Similarity=0.224  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAINF  127 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~~  127 (245)
                      .....++++++|+++ |++++|||.++....     .+.+-..+++.||+++......+    |.++++-..+|..+..-
T Consensus       253 ~~~~~~~i~~~L~~~-gl~~~did~~v~Hq~-----n~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sAsi~l~L~~~~~~  326 (359)
T 3h78_A          253 SQTLVRIAGEMLAAH-ELTLDDIDHVICHQP-----NLRILDAVQEQLGIPQHKFAVTVDRLGNMASASTPVTLAMFWPD  326 (359)
T ss_dssp             HHHHHHHHHHHHHHT-TCCGGGCSEEEECCS-----CHHHHHHHHHHHTCCGGGBCCCHHHHCBCGGGHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEECCC-----CHHHHHHHHHHhCcCHHHhhhhhhcccchHHHHHHHHHHHHHHh
Confidence            345567889999996 999999999875422     34556788999999755333333    24666666677654433


Q ss_pred             HhcCCCCCCeEEEEEe
Q psy2407         128 ILSKVSPGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~~~~~aLVv~~  143 (245)
                      ++    +++++|+++.
T Consensus       327 l~----~Gd~vll~~f  338 (359)
T 3h78_A          327 IQ----PGQRVLVLTY  338 (359)
T ss_dssp             SC----TTCEEEEEEE
T ss_pred             CC----CCCEEEEEEE
Confidence            22    5578877753

>4efi_A 3-oxoacyl-(acyl-carrier protein) synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.35A {Burkholderia xenovorans}

Probab=94.50  E-value=0.078  Score=46.30  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHH-
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAIN-  126 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~-  126 (245)
                      .....++++++|+++ |++++|||.++....     ...+-..+++.||+++......+    |.++++-..+|..+.. 
T Consensus       243 ~~~~~~~i~~~l~~~-gl~~~did~~v~Hq~-----~~~i~~~~~~~Lgl~~ek~~~~l~~~GNt~sasi~~~L~~~~~~  316 (354)
T 4efi_A          243 LNAVPKLVSRTLDIA-GRDKDSYDAFLFHQA-----NLFMLKHLAKKAGLPAERVPVNIGEYGNTSCASIPLLITTELKD  316 (354)
T ss_dssp             HHHHHHHHHHHHHHH-TCCGGGCSEEEECCC-----CHHHHHHHHHHTTCCGGGSCCCHHHHCBCGGGHHHHHHHHHSHH
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEeCCC-----CHHHHHHHHHHhCcCHHHHHHHHhhhCcHHHHHHHHHHHHHHHh
Confidence            355667888999997 999999999986432     33456778999999754333322    3467777777765532 


Q ss_pred             -HHhcCCCCCCeEEEEEe
Q psy2407         127 -FILSKVSPGAKALVIAT  143 (245)
Q Consensus       127 -~i~sg~~~~~~aLVv~~  143 (245)
                       .++    +++++|+++.
T Consensus       317 g~~~----~Gd~vll~~f  330 (354)
T 4efi_A          317 RLKE----ETLQLGMFGF  330 (354)
T ss_dssp             HHHH----SCEEEEEEEE
T ss_pred             CCCC----CCCEEEEEEE
Confidence             344    3367777654

>1hnj_A Beta-ketoacyl-acyl carrier protein synthase III; FABH, transferase; HET: MLC; 1.46A {Escherichia coli} SCOP: c.95.1.2 c.95.1.2 PDB: 1hn9_A* 1hnh_A* 1hnd_A* 1hnk_A 1mzs_A* 2eft_A* 2gyo_A* 3il9_A 1ebl_A*

Probab=94.45  E-value=0.12  Score=44.09  Aligned_cols=82  Identities=12%  Similarity=0.161  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---e-cCcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---L-KQACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v-~~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++.+++|+++ |++++|||.++.....     ...-..+.+.||+++......   + +..+++...+|..   +++
T Consensus       219 ~~~~~i~~aL~~a-gl~~~did~v~~H~~~-----~~~~d~i~~~lg~~~~~~~~~~~~~Gn~~~As~~~~L~~---~~~  289 (317)
T 1hnj_A          219 ELAHIVDETLAAN-NLDRSQLDWLVPHQAN-----LRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDE---AVR  289 (317)
T ss_dssp             HHHHHHHHHHHHT-TCCGGGCCEEEECCSC-----HHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEEcCCC-----HHHHHHHHHHcCCCHHHhHhhHhhhCcHHHHHHHHHHHH---HHH
Confidence            4567889999997 9999999998864332     123446888999964322111   2 2466666666644   345


Q ss_pred             cCCC-CCCeEEEEEec
Q psy2407         130 SKVS-PGAKALVIATD  144 (245)
Q Consensus       130 sg~~-~~~~aLVv~~e  144 (245)
                      .|.. +++++|+++.-
T Consensus       290 ~~~~~~G~~vll~~~G  305 (317)
T 1hnj_A          290 DGRIKPGQLVLLEAFG  305 (317)
T ss_dssp             TTCSCTTCEEEEEEEE
T ss_pred             hCCCCCCCEEEEEEEc
Confidence            5422 55788877543

>2ebd_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, aquifex VF5, lipid metabolism, structural genomics; 2.10A {Aquifex aeolicus}

Probab=94.41  E-value=0.12  Score=43.78  Aligned_cols=81  Identities=12%  Similarity=0.159  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee---e-cCcchhHHHHHHHHHHHHh
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE---L-KQACYSCTAGLQMAINFIL  129 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d---v-~~~C~~~~~aL~~A~~~i~  129 (245)
                      ...++++++|+++ |++++|||.++......     ..-..+.+.||+++......   + +..+++++.+|..+   ++
T Consensus       211 ~~~~~i~~al~~a-gl~~~did~~~~H~~~~-----~~~~~~~~~lg~~~~~~~~~~~~~Gh~~~As~~~~L~~~---~~  281 (309)
T 2ebd_A          211 SMEEVCREVLEKA-GVKPEEVSLVIPHQANV-----RIINALAEKLNIPKEKVFVNIQKYGNTSAASIPIALHEA---IK  281 (309)
T ss_dssp             HHHHHHHHHHHHH-TCCGGGCSEEEECCSCH-----HHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEEcCCCH-----HHHHHHHHHhCCCHHHhhhhHhhhcchHHHHHHHHHHHH---HH
Confidence            5677899999997 99999999988643321     22345788999854322212   2 24666666666543   44


Q ss_pred             cCCC-CCCeEEEEEe
Q psy2407         130 SKVS-PGAKALVIAT  143 (245)
Q Consensus       130 sg~~-~~~~aLVv~~  143 (245)
                      .|.. +++++|+++.
T Consensus       282 ~g~~~~G~~~l~~~~  296 (309)
T 2ebd_A          282 EGKVKRGDLILMTAM  296 (309)
T ss_dssp             TTCCCTTCEEEEEEE
T ss_pred             cCCCCCCCEEEEEEE
Confidence            4422 4567777654

>1ub7_A 3-oxoacyl-[acyl-carrier protein] synthase; fatty acid synthesis, beta-ketoacyl-ACP synthase III, FABH; 2.30A {Thermus thermophilus} SCOP: c.95.1.2 c.95.1.2

Probab=94.06  E-value=0.17  Score=43.11  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee---eec-CcchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF---ELK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~---dv~-~~C~~~~~aL~~A~~~i  128 (245)
                      +-..++.+++|+++ |++++|||.++......     ..-..+.+.||++......   .++ ..++++..+|..   ++
T Consensus       220 ~~~~~~i~~al~~a-gl~~~did~~~~H~~~~-----~~~d~~~~~lg~~~~~~~~~~~~~Gh~~~As~~~~l~~---~l  290 (322)
T 1ub7_A          220 RVMNTATLEAIEKA-GLTPEDIRLFVPHQANL-----RIIDAARERLGLPWERVAVNVDRYGNTSTASIPLALKE---AV  290 (322)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCSEEEECCSCH-----HHHHHHHHTTTCCGGGBCCCHHHHCBCGGGHHHHHHHH---HH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHCCEEEEcCCCH-----HHHHHHHHHcCCCHHHHHHHHHhhCcHHHHHHHHHHHH---HH
Confidence            45677899999997 99999999988643321     2234578899985432211   122 355666665543   44


Q ss_pred             hcCCC-CCCeEEEE
Q psy2407         129 LSKVS-PGAKALVI  141 (245)
Q Consensus       129 ~sg~~-~~~~aLVv  141 (245)
                      +.|.. +++++|++
T Consensus       291 ~~g~~~~g~~~l~~  304 (322)
T 1ub7_A          291 DAGRIREGDHVLLV  304 (322)
T ss_dssp             HHTSSCTTCEEEEE
T ss_pred             HhCCCCCCCEEEEE
Confidence            55532 33555554

>4ewp_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; transferase; 2.20A {Micrococcus luteus nctc 2665}

Probab=93.92  E-value=0.14  Score=44.29  Aligned_cols=82  Identities=12%  Similarity=0.099  Sum_probs=53.0

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee-e---ec-CcchhHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF-E---LK-QACYSCTAGLQMAINF  127 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~-d---v~-~~C~~~~~aL~~A~~~  127 (245)
                      ....++++++|+++ |++++|||.++...     ..+.+-..+++.||++++.... .   .+ .++++-..+|..+   
T Consensus       249 ~~~~~~i~~~L~~~-gl~~~did~~v~Hq-----~~~~i~~~~~~~Lgl~~~~~~~~~l~~~GNtssasi~~~L~~~---  319 (350)
T 4ewp_A          249 WSMAKVAREALDAA-GVEPEDLAAFIPHQ-----ANMRIIDEFAKQLKLPESVVVARDIADAGNTSAASIPLAMHRL---  319 (350)
T ss_dssp             HTHHHHHHHHHHHH-TCCGGGEEEEEECC-----SCHHHHHHHHHHTTCCTTSEECCTHHHHCBCGGGHHHHHHHHH---
T ss_pred             HhhhHHHHHHHHhh-cCChhHhceEEecC-----CCHHHHHHHHHHcCcChHhEEecccccccchHHHHHHHHHHHH---
Confidence            34567889999997 99999999988542     2345566789999997553221 2   23 3566666666543   


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.|.. +++++|+++.
T Consensus       320 ~~~g~~~~Gd~vll~~f  336 (350)
T 4ewp_A          320 LEENPELSGGLALQIGF  336 (350)
T ss_dssp             HHHCGGGTTSEEEEEEE
T ss_pred             HHhCCCCCcCEEEEEEE
Confidence            333321 4577877753

>1ted_A PKS18; thiolase fold, substrate binding tunnel, transferase; HET: MYR; 2.25A {Mycobacterium tuberculosis} SCOP: c.95.1.2 PDB: 1tee_A

Probab=93.53  E-value=0.13  Score=45.50  Aligned_cols=82  Identities=11%  Similarity=0.049  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-----e-eecC-cchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-----F-ELKQ-ACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-----~-dv~~-~C~~~~~aL~~A~  125 (245)
                      +-..++++++|+++ |++++|||.++.....     ...-..+.+.||+++....     + +++| ++++...+|   .
T Consensus       287 ~~~~~~i~~aL~~a-gl~~~dId~~~~H~~~-----~~i~d~~~~~lgl~~~k~~~s~~~~~~~GNt~sAsi~~~L---~  357 (393)
T 1ted_A          287 SGVAPVVTEMLWDN-GLQISDIDLWAIHPGG-----PKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVL---E  357 (393)
T ss_dssp             HHHHHHHHHHHHHT-TCCGGGCSCEEECCSC-----HHHHHHHHHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHH---H
T ss_pred             HHHHHHHHHHHHHc-CCCHhHCCEEEECCCc-----HHHHHHHHHHcCCCHHHHHHHHHHHHhhCCchHhHHHHHH---H
Confidence            34456778999997 9999999998864322     2344568889999654322     1 2333 334434444   4


Q ss_pred             HHHhcCCC--CCCeEEEEEe
Q psy2407         126 NFILSKVS--PGAKALVIAT  143 (245)
Q Consensus       126 ~~i~sg~~--~~~~aLVv~~  143 (245)
                      .+++.|..  +++++|+++.
T Consensus       358 ~~~~~g~~~~~Gd~vll~~~  377 (393)
T 1ted_A          358 TMVQQAESAKAISTGVAFAF  377 (393)
T ss_dssp             HHHHSCSSSSSSEEEEEEEE
T ss_pred             HHHhcCccCCCCCeEEEEEe
Confidence            45566642  4566776643

>2h84_A Steely1; thiolase-fold, type III polyketide synthase, PKS, chalcone-S synthase superfamily, type I PKS; HET: P6G; 2.90A {Dictyostelium discoideum}

Probab=92.64  E-value=0.33  Score=42.33  Aligned_cols=80  Identities=19%  Similarity=0.180  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHhcCC------CCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce--ee----e-cCcchhHHH
Q psy2407          53 SFAINAAAPLIDNLSN------IDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FE----L-KQACYSCTA  119 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g------~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~--~d----v-~~~C~~~~~  119 (245)
                      +...++++++|+++ |      ++++|||.+ .. .+.    ..+-..+.+.||+++....  .+    + +.++++...
T Consensus       267 ~~~~~~i~~~L~~a-g~~~~~~l~~~did~~-~H-~~~----~~i~d~~~~~lgl~~~k~~~s~~~~~~~Gnt~sasi~~  339 (374)
T 2h84_A          267 SGIEAFVDTLLDKA-KLQTSTAISAKDCEFL-IH-TGG----KSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIF  339 (374)
T ss_dssp             HHHHHHHHHHHHHH-TTTSCSCCCSSSSEEE-EC-CCC----HHHHHHHHHHTTCCGGGGHHHHHHHHHHCBCTTHHHHH
T ss_pred             HHHHHHHHHHHHhc-CCccccCCChhhcCEe-EC-CCC----HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCchhhHHHH
Confidence            34566788999997 9      999999998 43 221    2334568899999654322  12    3 235555555


Q ss_pred             HHHHHHHHHhcCCCCCCeEEEEEe
Q psy2407         120 GLQMAINFILSKVSPGAKALVIAT  143 (245)
Q Consensus       120 aL~~A~~~i~sg~~~~~~aLVv~~  143 (245)
                      +|.   .+++.+. +++++|+++.
T Consensus       340 ~L~---~~~~~~~-~Gd~vll~~~  359 (374)
T 2h84_A          340 VMD---HARKSKS-LPTYSISLAF  359 (374)
T ss_dssp             HHH---HHHTCSC-CCSEEEEEEE
T ss_pred             HHH---HHHhhcC-CCCeEEEEEe
Confidence            554   3456665 5677777643

>1u0m_A Putative polyketide synthase; type III polyketide synthase, PKS, bacterial, thiolase fold, beta-alpha-beta-alpha fold, catalytic triad; HET: 15P; 2.22A {Streptomyces coelicolor} SCOP: c.95.1.2 c.95.1.2

Probab=92.46  E-value=0.22  Score=43.81  Aligned_cols=76  Identities=14%  Similarity=0.163  Sum_probs=47.2

Q ss_pred             HHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-----e-eec-CcchhHHHHHHHHHHHHhc
Q psy2407          58 AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-----F-ELK-QACYSCTAGLQMAINFILS  130 (245)
Q Consensus        58 Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-----~-dv~-~~C~~~~~aL~~A~~~i~s  130 (245)
                      +++++|+++ |++++|||.++......     ..-..+.+.||+++....     + .++ .++++...+|   ..+++.
T Consensus       257 ~i~~aL~~a-gl~~~dId~v~~H~~~~-----~i~d~~~~~lgl~~~k~~~s~~~~~~~Gnt~sAsi~~~L---~~~~~~  327 (382)
T 1u0m_A          257 ALKELAGEH-GWDASDLDFYIVHAGGP-----RILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDAL---RRLFDE  327 (382)
T ss_dssp             HHHHHHHTT-SCCSSCCSCCEEECSHH-----HHHHHHHHHSCSCGGGGHHHHHHHHHTCBCTTHHHHHHH---HHHHHS
T ss_pred             HHHHHHHHc-CCCHHHCCEEEECCCCH-----HHHHHHHHHcCCCHHHHHHHHHHHHHhCCchhhHHHHHH---HHHHHh
Confidence            889999997 99999999998654332     334468889999654321     1 232 3555555555   344555


Q ss_pred             CCC-CCCeEEEEE
Q psy2407         131 KVS-PGAKALVIA  142 (245)
Q Consensus       131 g~~-~~~~aLVv~  142 (245)
                      |.. +++++|+++
T Consensus       328 g~~~~Gd~vll~~  340 (382)
T 1u0m_A          328 GGVEEGARGLLAG  340 (382)
T ss_dssp             CCCCSSCCCEEEE
T ss_pred             cCCCCCCEEEEEE
Confidence            522 345555543

>3s3l_A CERJ; acyltransferase, FABH homologue, KS III homologue, dimethyl transfer, transferase; 2.00A {Streptomyces tendae} PDB: 3t5y_A* 3t6s_A* 3t8e_A 3t5y_B*

Probab=92.26  E-value=0.24  Score=43.27  Aligned_cols=81  Identities=16%  Similarity=0.262  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----c-CcchhHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----K-QACYSCTAGLQMAIN  126 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~-~~C~~~~~aL~~A~~  126 (245)
                      .....++++++|+++ |++++|||.+|+..+.... .    ..++++||+++.....++    + .++++-..+|..   
T Consensus       237 ~~~~~~~i~~~L~~~-gl~~~did~~v~~hq~~~~-~----~~~~~~lgl~~ek~~~~~~~~~GNt~aAsipl~L~~---  307 (357)
T 3s3l_A          237 IDLLVAAKTQALEDA-GTAIEDIAHAVIPVSRRGT-G----HELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAH---  307 (357)
T ss_dssp             HHHHHHHHHHHHHHT-TCCGGGCSEEECCSCCCCS-S----CCHHHHHTSCGGGBTHHHHHHHCBCTTCHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCCEEEecCcChHH-H----HHHHHHcCCCHHHhHHHhccccccchHhHHHHHHHH---
Confidence            446677889999997 9999999999953333222 3    246788999755433333    2 245555556644   


Q ss_pred             HHhcCCC-CCCeEEEE
Q psy2407         127 FILSKVS-PGAKALVI  141 (245)
Q Consensus       127 ~i~sg~~-~~~~aLVv  141 (245)
                      +++.|.. +++++|++
T Consensus       308 ~~~~g~l~~Gd~vll~  323 (357)
T 3s3l_A          308 LVENALVQPGDRVLLF  323 (357)
T ss_dssp             HHHTTCCCTTCEEEEE
T ss_pred             HHHcCCCCCCCEEEEE
Confidence            4445532 34556555

>3led_A 3-oxoacyl-acyl carrier protein synthase III; structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.45A {Rhodopseudomonas palustris}

Probab=89.74  E-value=0.43  Score=42.24  Aligned_cols=82  Identities=11%  Similarity=0.133  Sum_probs=48.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc-CC--CCCcceee---ec-CcchhHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL-GL--NRNCRLFE---LK-QACYSCTAGLQMA  124 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L-Gl--~~~~~~~d---v~-~~C~~~~~aL~~A  124 (245)
                      .....++++++|+++ |++++|||.++...     ..+.+-..++++| |+  +.......   .+ .++++-..+|..+
T Consensus       290 ~~~~~~~i~~~L~~~-gl~~~dId~~v~Hq-----an~~i~~~~~~~llgl~~~~~k~~~~l~~~GNtssAsipl~L~~~  363 (392)
T 3led_A          290 VPLVSEMIIEHAREI-GIDPHGLKRMWLHQ-----ANINMNEIIGRKVLGRDPTRDENVIILDDYANTSSAGSIIAFHKH  363 (392)
T ss_dssp             HHHHHHHHHHHHHHT-TCCGGGCSEEEECS-----SCHHHHHHHHHHHHTSCCCTTTBCCCHHHHCBCGGGHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHc-CCCHHHCcEEEEcC-----CCHHHHHHHHHHhcCCCCCHHHHHHHHhhhCccHHHHHHHHHHHH
Confidence            455667789999997 99999999888532     2234555677775 75  22222222   22 3666666666553


Q ss_pred             HHHHhcCCCCCCeEEEEEe
Q psy2407         125 INFILSKVSPGAKALVIAT  143 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~  143 (245)
                      ...++    +++++|+++.
T Consensus       364 ~~~~~----~Gd~vll~gf  378 (392)
T 3led_A          364 QDDMA----QGDLGLICSF  378 (392)
T ss_dssp             CTTCC----TTCEEEEEEE
T ss_pred             hCCCC----CCCEEEEEEE
Confidence            22221    4466776654

>4e1l_A Acetoacetyl-COA thiolase 2; 3-layer(ABA) sandwich, transferase; 2.00A {Clostridium difficile}

Probab=89.67  E-value=1.1  Score=39.51  Aligned_cols=78  Identities=13%  Similarity=0.123  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCc-ce----eeec--CcchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNC-RL----FELK--QACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~-~~----~dv~--~~C~~~~~aL~~A~~~  127 (245)
                      ...|++++|+++ |++++|||++.+.     +.+......+.+.||+.+.. ..    ..++  .+|+|....+.+..++
T Consensus       296 ~~~ai~~al~~a-gl~~~dId~ve~~-----d~fa~~~~~~~~~lg~~~~~v~~~gg~~~~Gh~~gasG~~~~~~~~~~L  369 (395)
T 4e1l_A          296 PIPATRKALKKA-GLSINDIDLIEAN-----EAFAAQALAVKNELQIDSSKLNVNGGAIALGHPIGASGARILVTLIYEM  369 (395)
T ss_dssp             HHHHHHHHHHHT-TCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEec-----ChhHHHHHHHHHHhCCCCCCCCcCCchhhcCCcHHHHHHHHHHHHHHHH
Confidence            357899999997 9999999999852     22334556678889985321 11    1122  2565555555554444


Q ss_pred             HhcCCCCCCeEEEE
Q psy2407         128 ILSKVSPGAKALVI  141 (245)
Q Consensus       128 i~sg~~~~~~aLVv  141 (245)
                      -..+   .++.|+.
T Consensus       370 ~~~~---~~~gl~~  380 (395)
T 4e1l_A          370 QKRK---VETGLAT  380 (395)
T ss_dssp             HHHT---CSEEEEE
T ss_pred             HhcC---CCEEEEE
Confidence            3333   2666654

>3tsy_A Fusion protein 4-coumarate--COA ligase 1, resvera synthase; transferase; 3.10A {Arabidospis thaliana}

Probab=89.06  E-value=0.83  Score=44.96  Aligned_cols=73  Identities=14%  Similarity=0.024  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee------eec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF------ELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~------dv~-~~C~~~~~aL~~A~  125 (245)
                      +...++++++|+++ |++++|||.++....     ...+-..+.++||++......      .++ .++++-..+|..+.
T Consensus       864 ~~~~~~~~~al~~a-gl~~~did~~~~Hq~-----~~~i~~~~~~~lgl~~~k~~~~~~~l~~~GNtssasi~~~L~~~~  937 (979)
T 3tsy_A          864 ENVEKCLTQAFDPL-GISDWNSLFWIAHPG-----GPAILDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFILDEMR  937 (979)
T ss_dssp             HHHHHHHHHHHGGG-TCCCGGGSEEEECCS-----CHHHHHHHHHHHTCCTTTTHHHHHHHHHHCBCTTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhc-CCCCcccceEEECCC-----ChHHHHHHHHHcCCChHHHHHHHHHHHHcCCcchhhHHHHHHHHH
Confidence            34667888999997 999999999875422     234566788999997553222      233 58888888888877


Q ss_pred             HHHhcC
Q psy2407         126 NFILSK  131 (245)
Q Consensus       126 ~~i~sg  131 (245)
                      .-++.|
T Consensus       938 ~~~~~G  943 (979)
T 3tsy_A          938 KKSLKG  943 (979)
T ss_dssp             HHHHHT
T ss_pred             hhhccc
Confidence            766655

>2vu1_A Acetyl-COA acetyltransferase; acyltransferase, PHB biosynthesis, thiolase FOL; HET: CSO OPI; 1.51A {Zoogloea ramigera} PDB: 1nl7_A* 1ou6_A* 2vu0_A* 1m4s_A* 2vu2_A* 2wkv_A* 2wku_A* 1m1t_A 1m3k_A 1m1o_A 1m3z_A* 2vtz_A* 2wl5_A* 2wkt_A* 2wl4_A* 1m4t_A* 2wl6_A 1qfl_A* 1dlv_A* 1dlu_A* ...

Probab=88.63  E-value=1.2  Score=39.09  Aligned_cols=42  Identities=12%  Similarity=0.186  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-..     +.+...+-.+.+.||+.
T Consensus       292 ~~~a~~~al~~a-gl~~~dId~ie~~-----d~f~~~~l~~~~~lg~~  333 (392)
T 2vu1_A          292 PIPASRKALERA-GWKIGDLDLVEAN-----EAFAAQACAVNKDLGWD  333 (392)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEEC-----CSBHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEec-----cccHHHHHHHHHHcCCC
Confidence            367999999997 9999999998753     22333344467889984

>2d3m_A Pentaketide chromone synthase; chalcone synthase, polyketide synthase, transferase; HET: COA; 1.60A {Aloe arborescens} PDB: 2d51_A 2d52_A*

Probab=87.72  E-value=1.7  Score=38.31  Aligned_cols=66  Identities=11%  Similarity=0.013  Sum_probs=42.8

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCCCCCCcHHHHHHHHcCCCCCccee------ee-cCcchhHHHHHH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIEL----IITCSESGIDFGKSMSTYIHHYLGLNRNCRLF------EL-KQACYSCTAGLQ  122 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~------dv-~~~C~~~~~aL~  122 (245)
                      ...++++++|+++ |++++ ||.    ++....     ...+-..+++.||+++.....      .+ |.++++...+|.
T Consensus       291 ~~~~~i~~~L~~a-gl~~~-id~~di~~v~Hq~-----~~~i~~~~~~~lgl~~~k~~~s~~~l~~~GNt~sAsi~~~L~  363 (406)
T 2d3m_A          291 NVEACLIDVFKSV-GITPP-EDWNSLFWIPHPG-----GRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILD  363 (406)
T ss_dssp             HHHHHHHHHHHTT-TCCCC-SSGGGSEEEECCS-----CHHHHHHHHHHTTCCTTTTHHHHHHHHHHCBCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhc-CCCCC-CCccceEEEECCC-----CHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence            4456788999996 99988 888    664322     223445688899997553322      23 347777777776


Q ss_pred             HHHH
Q psy2407         123 MAIN  126 (245)
Q Consensus       123 ~A~~  126 (245)
                      .+..
T Consensus       364 ~~~~  367 (406)
T 2d3m_A          364 EMRR  367 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>1xpm_A 3-hydroxy-3-methylglutaryl COA synthase; HMG-COA synthase, HMGS, coenzyme A, thiolase fold, condensing enzyme; HET: HMG CAA; 1.60A {Staphylococcus aureus subsp} SCOP: c.95.1.2 c.95.1.2 PDB: 1xpl_A* 1xpk_A* 1tvz_A 1txt_A*

Probab=87.21  E-value=0.41  Score=42.30  Aligned_cols=81  Identities=5%  Similarity=-0.168  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc-----CCCCCcc----------eeeec-CcchhH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL-----GLNRNCR----------LFELK-QACYSC  117 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L-----Gl~~~~~----------~~dv~-~~C~~~  117 (245)
                      ...++.+++|+++ |++++|||.+++.....     .....+.++|     |+++...          .-.++ .++++.
T Consensus       208 ~~~~~~~~~L~~a-gl~~~did~~~~H~~~~-----~~~~~~~~~l~~~~~~~~~e~~~~~~~~s~~~~~~~GN~~saSi  281 (396)
T 1xpm_A          208 SFQQSWNEYAKRQ-GKSLADFASLCFHVPFT-----KMGKKALESIIDNADETTQERLRSGYEDAVDYNRYVGNIYTGSL  281 (396)
T ss_dssp             HHHHHHHHHHHHH-TCCGGGCSEEEECCSSH-----HHHHHHHHTTGGGSCHHHHHHHHHHHHHHTTGGGGTCCCGGGHH
T ss_pred             HHHHHHHHHHHHc-CCCHHHCCEEEecCCch-----HHHHHHHHHHHhhcccCCHHHHHHHhhhhhhhhhhcCchHHHHH
Confidence            4677889999997 99999999998653321     1222333444     4422111          12343 466666


Q ss_pred             HHHHHHHHHHHhcCCC-CCCeEEEEEe
Q psy2407         118 TAGLQMAINFILSKVS-PGAKALVIAT  143 (245)
Q Consensus       118 ~~aL~~A~~~i~sg~~-~~~~aLVv~~  143 (245)
                      ..+|..+   ++.+.. +++++|+++.
T Consensus       282 ~l~L~~~---l~~~~l~~Gd~ill~s~  305 (396)
T 1xpm_A          282 YLSLISL---LENRDLQAGETIGLFSY  305 (396)
T ss_dssp             HHHHHHH---HHHSCCCTTCEEEEEEE
T ss_pred             HHHHHHH---HHcCCCCCCCEEEEEEE
Confidence            6666544   333422 5577776643

>4egv_A Acetyl-COA acetyltransferase; NEW SUB-family, thiolase fold; 2.71A {Mycobacterium smegmatis}

Probab=87.02  E-value=1.9  Score=39.55  Aligned_cols=81  Identities=19%  Similarity=0.085  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcc-eee-------ec-CcchhHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCR-LFE-------LK-QACYSCTAGLQM  123 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~-~~d-------v~-~~C~~~~~aL~~  123 (245)
                      .-...|++++|+++ |++++|||++-+.-     .++...-...+.||+.++-+ .+.       ++ -..++++.++..
T Consensus       317 ~~~~~a~~~al~~a-gl~~~did~~E~~d-----AF~~~~l~~~~~lG~~~~~~~~~n~~Gg~~~~Ghp~~a~g~~~~~~  390 (520)
T 4egv_A          317 PASVTAVNEALRVA-GIGLDDVAAFDLYS-----CFPFPVFNICDGTGLATDDPRGLTLTGGLPFFGGLGNNYSMHGIAE  390 (520)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGEEEEEECC-----SSSHHHHHHHHHHCCCTTCTTCSCSSCCHHHHCSCSSSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHh-CCCHHHCCEEEEeC-----CcHHHHHHHHHHhCCCCCCCCCcCCCcccccCCChHHHHHHHHHHH
Confidence            34567899999997 99999999887653     34566777788999843211 122       22 234566777777


Q ss_pred             HHHHHhcCCCCCCeEEEE
Q psy2407         124 AINFILSKVSPGAKALVI  141 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv  141 (245)
                      +...|+.+  ++++.|+.
T Consensus       391 ~v~~lr~~--~~~~~L~~  406 (520)
T 4egv_A          391 AVNEMRDK--PGQFALVG  406 (520)
T ss_dssp             HHHHHHHS--TTCEEEEE
T ss_pred             HHHHHhcC--CCCceEEe
Confidence            77777776  44888875

>3ss6_A Acetyl-COA acetyltransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha beta; HET: CSO; 1.70A {Bacillus anthracis}

Probab=86.75  E-value=1.7  Score=38.22  Aligned_cols=42  Identities=10%  Similarity=0.063  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|++++|+++ |++++|||++.+.     +.+......+.+.||+.
T Consensus       294 ~~~a~~~al~~a-gl~~~dId~ve~~-----d~fa~~~~~~~~~lg~~  335 (394)
T 3ss6_A          294 PAPAIRKGLEKV-DWSLEDADLLEIN-----EAFAAQYLAVEKELDLD  335 (394)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEeC-----CchHHHHHHHHHHhCCC
Confidence            467899999997 9999999999843     22334556678889985

>3svk_A Acetyl-COA acetyltransferase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, structu genomics; 2.20A {Mycobacterium avium}

Probab=86.44  E-value=1.8  Score=38.36  Aligned_cols=41  Identities=15%  Similarity=0.154  Sum_probs=30.6

Q ss_pred             HHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          56 INAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        56 ~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ..|++++|+++ |++++|||++-..-.     +........+.||+.
T Consensus       308 ~~a~~~al~~A-gl~~~dId~~e~hda-----f~~~~l~~~~~lg~~  348 (407)
T 3svk_A          308 TPATRKVLDRA-GLTIDDIDLFELNEA-----FASVVLKFQKDLNIP  348 (407)
T ss_dssp             HHHHHHHHHHH-TCCGGGCSEEEECCS-----BHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHc-CCCHHHCCEEEEeCh-----hHHHHHHHHHHhCCC
Confidence            57899999997 999999999986422     223344556789985

>1ulq_A Putative acetyl-COA acetyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 3.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1

Probab=84.94  E-value=3.4  Score=36.33  Aligned_cols=41  Identities=10%  Similarity=0.093  Sum_probs=28.4

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ...|+++||+++ |++++|||++-..-++     ....-...+.||+
T Consensus       298 ~~~a~~~al~~A-gl~~~dId~ie~heaf-----a~~~l~~~~~lg~  338 (401)
T 1ulq_A          298 PVPATRKALERA-GLSFSDLGLIELNEAF-----AAQALAVLREWSL  338 (401)
T ss_dssp             HHHHHHHHHHHT-TCCGGGCSEEEECCSB-----HHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEEecch-----HHHHHHHHHHcCC
Confidence            368999999997 9999999998754222     1222233456887

>4dd5_A Acetyl-COA acetyltransferase; structural genomics, center for structural genomics of infec diseases, csgid, thiolase; 1.25A {Clostridium difficile}

Probab=83.83  E-value=2.5  Score=37.18  Aligned_cols=42  Identities=14%  Similarity=0.207  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|++++|+++ |++++|||++-+.     ..+......+.+.||+.
T Consensus       297 ~~~a~~~al~~A-gl~~~dId~ve~~-----d~f~~~~~~~~~~lg~~  338 (396)
T 4dd5_A          297 PVPATKKALEAA-NMTIEDIDLVEAN-----EAFAAQSVAVIRDLNID  338 (396)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEEC-----CSBHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEec-----ChHHHHHHHHHHHhCCC
Confidence            477899999997 9999999999852     12334455667888974

>3ho9_A 3-oxoacyl-[acyl-carrier-protein] synthase 2; FABF, platensimycin, platencin A1, KAS2, acyltransferase, fatty acid biosynthesis; HET: N3A; 1.90A {Escherichia coli} PDB: 3hnz_A* 3ho2_A* 3i8p_A* 3g11_A* 2gfx_A* 3g0y_A* 2gfv_A* 2gfw_A 2gfy_A* 1kas_A 1b3n_A

Probab=83.56  E-value=0.61  Score=41.61  Aligned_cols=77  Identities=10%  Similarity=-0.004  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCCC-cce----eeec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNRN-CRL----FELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~~-~~~----~dv~-~~C~~~~~aL~~A~  125 (245)
                      .-..+|+++||+++ |++++|||++.. +|.|+ ...+.....+.+.+|.+.. ++.    ..++ ...++|+..+..+.
T Consensus       292 ~~~~~ai~~al~~A-gl~~~dId~ve~HgtgT~-~~d~~e~~a~~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~  369 (427)
T 3ho9_A          292 AGAALAMANALRDA-GIEASQIGYVNAHGTSTP-AGDKAEAQAVKTIFGEAASRVLVSSTKSMTGHLLGAAGAVESIYSI  369 (427)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCCEEECCCCSCH-HHHHHHHHHHHHHHGGGGGTSEEECTHHHHCBCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHccEEEecCCcCC-CcCHHHHHHHHHHhcccCCCeEEecchHhhccCHHHHHHHHHHHHH
Confidence            45678899999997 999999999984 44443 2234455666777775311 221    1132 35567777777777


Q ss_pred             HHHhcC
Q psy2407         126 NFILSK  131 (245)
Q Consensus       126 ~~i~sg  131 (245)
                      ..|+.+
T Consensus       370 ~~l~~~  375 (427)
T 3ho9_A          370 LALRDQ  375 (427)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            777765

>1wdk_C 3-ketoacyl-COA thiolase; alpha2BETA2 heterotetrameric complex, lyase, oxidoreductase/transferase complex, lyase; HET: ACO NAD N8E; 2.50A {Pseudomonas fragi} SCOP: c.95.1.1 c.95.1.1 PDB: 1wdl_C* 1wdm_C* 2d3t_C*

Probab=82.81  E-value=2.8  Score=36.75  Aligned_cols=42  Identities=10%  Similarity=0.074  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-..-+     +......+.+.||+.
T Consensus       287 ~~~a~~~al~~A-gl~~~dId~ve~~d~-----f~~~~~~~~~~lg~~  328 (390)
T 1wdk_C          287 PVPATQKALKRA-GLNMADIDFIELNEA-----FAAQALPVLKDLKVL  328 (390)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCCEEEECCS-----BHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHHHHc-CCChhhCcEEEeccC-----CHHHHHHHHHHcCCC
Confidence            368999999997 999999999864322     222344556788874

>1wl4_A Acetyl-coenzyme A acetyltransferase 2; thiolase fold; HET: COA; 1.55A {Homo sapiens} PDB: 1wl5_A

Probab=82.23  E-value=2.3  Score=37.39  Aligned_cols=42  Identities=19%  Similarity=0.202  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLN  102 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~  102 (245)
                      ...|+++||+++ |++++|||++-+.     ..+......+.+.||+.
T Consensus       297 ~~~a~~~al~~A-gl~~~dId~ie~~-----d~f~~~~l~~~~~lg~~  338 (397)
T 1wl4_A          297 PIPAIKQAVTKA-GWSLEDVDIFEIN-----EAFAAVSAAIVKELGLN  338 (397)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCCEEEEC-----CSBHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHc-CCCHHHCCEEEEe-----cccHHHHHHHHHHcCCC
Confidence            468999999997 9999999998743     22233344577889984

>3goa_A 3-ketoacyl-COA thiolase; metabolism, fatty acid, phospholipid, IDP01071, acyltransferase, cytoplasm, fatty acid metabolism; 1.70A {Salmonella typhimurium}

Probab=82.02  E-value=3.5  Score=36.14  Aligned_cols=41  Identities=12%  Similarity=0.117  Sum_probs=30.4

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCC
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGL  101 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl  101 (245)
                      ...|++++|+++ |++++|||++-..-+.     ........+.||+
T Consensus       284 ~~~a~~~al~~a-gl~~~did~ve~h~~f-----~~~~~~~~~~lg~  324 (387)
T 3goa_A          284 PVPASKLALKKA-GLSASDIDVFEMNEAF-----AAQILPCIKDLGL  324 (387)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEECCSB-----HHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHc-CCCHHHcCEEEEeCcc-----hHHHHHHHHHhCC
Confidence            368899999997 9999999999754322     2234455677887

>3il6_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; HET: B83; 2.50A {Enterococcus faecalis} PDB: 3il5_A* 3il4_A*

Probab=81.11  E-value=5  Score=34.06  Aligned_cols=83  Identities=13%  Similarity=0.155  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee----cCcchhHHHHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL----KQACYSCTAGLQMAIN  126 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv----~~~C~~~~~aL~~A~~  126 (245)
                      ....+.+...++++++  ++++|||.++....     .+.+-..+++.||++++.....+    |.++++-..+|..   
T Consensus       219 v~~~~~~~~~~~i~~~--l~~~did~~v~Hq~-----~~~i~~~~~~~lgl~~ek~~~~l~~~GNt~sasi~~~L~~---  288 (321)
T 3il6_A          219 IFDFAIKDVSQNILSL--VTDETVDYLLLHQA-----NVRIIDKIARKTKISREKFLTNMDKYGNTSAASIPILLDE---  288 (321)
T ss_dssp             HHHHHHHHHHHHHHTT--CCGGGCSEEEECCS-----CHHHHHHHHHHHTCCGGGBCCCGGGTCBCGGGHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHHHH--cCcccCCEEEEcCC-----CHHHHHHHHHHcCcCHHHhhhhHhhcccHHHHHHHHHHHH---
Confidence            3555666777778775  45899999986432     23456788999999755333333    2355555555544   


Q ss_pred             HHhcCCC-CC--CeEEEEEe
Q psy2407         127 FILSKVS-PG--AKALVIAT  143 (245)
Q Consensus       127 ~i~sg~~-~~--~~aLVv~~  143 (245)
                      +++.|.. ++  +++|+++.
T Consensus       289 ~~~~g~~~~G~~d~vll~~f  308 (321)
T 3il6_A          289 AVENGTLILGSQQRVVLTGF  308 (321)
T ss_dssp             HHHTTSSCTTSCCEEEEEEE
T ss_pred             HHHhCCCCCCCCCEEEEEEE
Confidence            4444422 45  67777654

>3kzu_A 3-oxoacyl-(acyl-carrier-protein) synthase II; seattle structural genomics center for infectious disease, ssgcid, acyltransferase; 1.75A {Brucella melitensis} PDB: 3e60_A

Probab=80.81  E-value=2.1  Score=38.12  Aligned_cols=76  Identities=9%  Similarity=-0.014  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCCCC-cce----eeec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLNRN-CRL----FELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~~~-~~~----~dv~-~~C~~~~~aL~~A~  125 (245)
                      .-..+++++||+++ |++++|||.+... |.|  ...+.....+.+.+|.+.. +..    ..++ ...++|+..+..+.
T Consensus       293 ~~~~~ai~~al~~A-gl~~~dId~ve~HgtgT--~~d~~e~~al~~~~g~~~~~~~v~s~k~~~GH~~gAsG~~~~i~~~  369 (428)
T 3kzu_A          293 EGAQRCMVAALKRA-GIVPDEIDYINAHGTST--MADTIELGAVERVVGEAAAKISMSSTKSSIGHLLGAAGAAEAVFST  369 (428)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCCEEECCCCSS--TTHHHHHHHHHHHHGGGGGGCEEECTHHHHCBCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHeeEEEecCCcc--hhhHHHHHHHHHHhccCCCceeeCCchhhhCCCchhhHHHHHHHHH
Confidence            35678899999997 9999999999743 333  3334444556666776321 111    1122 23456666666666


Q ss_pred             HHHhcC
Q psy2407         126 NFILSK  131 (245)
Q Consensus       126 ~~i~sg  131 (245)
                      ..|+.+
T Consensus       370 ~~l~~~  375 (428)
T 3kzu_A          370 LAIRDN  375 (428)
T ss_dssp             HHHHHT
T ss_pred             HHhccC
Confidence            666655

>1j3n_A 3-oxoacyl-(acyl-carrier protein) synthase II; condensing enzymes, fatty acid elongation, acyl-carrier protein (ACP); HET: CIT; 2.00A {Thermus thermophilus} SCOP: c.95.1.1 c.95.1.1

Probab=80.56  E-value=0.55  Score=41.54  Aligned_cols=77  Identities=9%  Similarity=-0.019  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEE-eccCCCCCCcHHHHHHHHcCCCC-Cccee----eec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITC-SESGIDFGKSMSTYIHHYLGLNR-NCRLF----ELK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~-t~~~~~~~p~~a~~l~~~LGl~~-~~~~~----dv~-~~C~~~~~aL~~A~  125 (245)
                      .-..+++++||+++ |++++|||.+... |.|+ ..-+.....+.+.+|.+. .++.-    .++ ...++++..+..+.
T Consensus       275 ~~~~~ai~~al~~A-gl~~~dId~ve~Hgtgt~-~gD~~E~~al~~~~g~~~~~~~v~s~k~~~GH~~~AsG~~~li~~~  352 (408)
T 1j3n_A          275 KGAALAMARALKDA-GIAPEQVGYINAHGTSTP-VGDRAEVLAIKRVFGDHAKRLMVSSTKSMIGHLLGAAGAVEAIATV  352 (408)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCCEEECCCCSCH-HHHHHHHHHHHHHHHHHHTTCEEECTHHHHCBCGGGHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHcCEEEEeCCcCc-ccCHHHHHHHHHHhcCcCCCceEECchhhhccCHHHHHHHHHHHHH
Confidence            45678899999997 9999999998843 3222 111223445566666421 12221    233 35566777777777


Q ss_pred             HHHhcC
Q psy2407         126 NFILSK  131 (245)
Q Consensus       126 ~~i~sg  131 (245)
                      ..++.+
T Consensus       353 l~l~~~  358 (408)
T 1j3n_A          353 QALYHG  358 (408)
T ss_dssp             HHHHHT
T ss_pred             HHHhcC
Confidence            777655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	245
d1xpma1	166	c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA	1e-20
d1bi5a1	235	c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Med	3e-15
d1u0ma1	200	c.95.1.2 (A:2-201) Putative polyketide synthase SC	4e-11
d1hnja1	174	c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH	1e-09
d1xpma2	221	c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl Co	5e-07
d1u6ea1	184	c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (Fa	1e-06
d1mzja1	181	c.95.1.2 (A:3-183) Priming beta-ketosynthase from	5e-05

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 166

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 83.7 bits (206), Expect = 1e-20
 Identities = 62/180 (34%), Positives = 101/180 (56%), Gaps = 18/180 (10%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQ-QKSVSLPYEDPVSFAINAAAPL 62
           +GI+ IN Y    ++D+ +LA+ R++D  +F   + Q + +VS   +D VS   NAA   
Sbjct: 2   IGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAK-- 59

Query: 63  IDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ 122
            D +++ DK  I ++I  +ES +D  K+ +  IH+ LG+    R FE+K+ACY+ T  +Q
Sbjct: 60  -DIITDEDKKKIGMVIVATESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQ 118

Query: 123 MAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP 181
           +A +++ ++  P  K LVIATD       +             EP+ GAGAVAM+I+  P
Sbjct: 119 LAKDYLATR--PNEKVLVIATDTARYGLNSGG-----------EPTQGAGAVAMVIAHNP 165

>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]} Length = 235

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

 Score = 70.6 bits (172), Expect = 3e-15
 Identities = 25/135 (18%), Positives = 51/135 (37%), Gaps = 6/135 (4%)

Query: 49  EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF 108
            +       AA   I       K+ I  +I C+ SG+D   +               R  
Sbjct: 100 VEVPRLGKEAAVKAIKE-WGQPKSKITHLIVCTTSGVDMPGADYQLTKLLGLRPYVKRYM 158

Query: 109 ELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPS 167
             +Q C++    L++A +   +    GA+ LV+ +++ +  F      +  ++    +  
Sbjct: 159 MYQQGCFAGGTVLRLAKDLAENN--KGARVLVVCSEVTAVTFRGPS--DTHLDSLVGQAL 214

Query: 168 GGAGAVAMLISDKPE 182
            G GA A+++   P 
Sbjct: 215 FGDGAAALIVGSDPV 229

>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]} Length = 200

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

 Score = 58.2 bits (140), Expect = 4e-11
 Identities = 23/131 (17%), Positives = 49/131 (37%), Gaps = 9/131 (6%)

Query: 52  VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK 111
            S         +D+ + +    I++II  S +G       +  I+     +   ++   +
Sbjct: 76  KSRVPAVIQRALDD-AELLATDIDVIIYVSCTGFMMPSLTAWLINEMGFDSTTRQIPIAQ 134

Query: 112 QACYSCTAGLQMAINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAF-FEPSGG 169
             C +  A +  A +F  +   P A AL++A +  S  +   D    ++     F    G
Sbjct: 135 LGCAAGGAAINRAHDFCTAY--PEANALIVACEFCSLCYQPTDLGVGSLLCNGLF----G 188

Query: 170 AGAVAMLISDK 180
            G  A ++  +
Sbjct: 189 DGIAAAVVRGR 199

>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]} Length = 174

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

 Score = 54.1 bits (129), Expect = 1e-09
 Identities = 39/183 (21%), Positives = 66/183 (36%), Gaps = 10/183 (5%)

Query: 2   IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAP 61
           +   I     Y         +L K               ++       + VS     AA 
Sbjct: 1   MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAAT 60

Query: 62  LIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGL 121
               ++ I+K+ I LI+  + S      S +  I   LG+ + C  F++  AC   T  L
Sbjct: 61  RAIEMAGIEKDQIGLIVVATTSATHAFPSAACQIQSMLGI-KGCPAFDVAAACAGFTYAL 119

Query: 122 QMAINFILSKVSPGAKALVIATD-ISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK 180
            +A  ++  K      ALV+ +D ++R     D+              GAGA  +  S++
Sbjct: 120 SVADQYV--KSGAVKYALVVGSDVLARTCDPTDRG------TIIIFGDGAGAAVLAASEE 171

Query: 181 PEI 183
           P I
Sbjct: 172 PGI 174

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]} Length = 221

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

 Score = 46.8 bits (111), Expect = 5e-07
 Identities = 14/50 (28%), Positives = 21/50 (42%), Gaps = 1/50 (2%)

Query: 191 NGYYSFEVMDTCRPIPDSEA-GNADLSLLSYLDCCAQSFKEYKKRVQYKI 239
              Y+ +V D  RP        +  LS  +Y+    QS+ EY KR    +
Sbjct: 8   AVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSL 57

>d1u6ea1 c.95.1.2 (A:-10-174) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]} Length = 184

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 45.3 bits (106), Expect = 1e-06
 Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 12/180 (6%)

Query: 4   VGIEAINLYGGSVFIDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLI 63
           VG+ ++  Y     +   E+ ++              +       ++  +     A    
Sbjct: 13  VGLLSVGAYRPERVVTNDEICQHIDSSDEWIYTRTGIKTRRFAADDESAASMATEACRRA 72

Query: 64  DNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM 123
            + + +    I+ +I  + +        +  +   LG  +    F+L          L  
Sbjct: 73  LSNAGLSAADIDGVIVTTNTHFLQTPPAAPMVAASLG-AKGILGFDLSAGAAGFGYALGA 131

Query: 124 AINFILSKVSPGAKALVIATDI-SRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPE 182
           A + I       A  LV+ T+  S      D+         F      GA A+++ + P 
Sbjct: 132 AADMIRGG--GAATMLVVGTEKLSPTIDMYDRG----NCFIF----ADGAAAVVVGETPF 181

>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]} Length = 181

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

 Score = 40.6 bits (94), Expect = 5e-05
 Identities = 34/166 (20%), Positives = 62/166 (37%), Gaps = 8/166 (4%)

Query: 18  IDVIELAKYRKLDTVRFENLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELI 77
           +   E+  +        E     +       ++ +     AA+      + +D   I+L+
Sbjct: 24  VSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHAGVDPAEIDLV 83

Query: 78  ITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAK 137
           +  + +       +S  I H LG   N   F+L  AC      L +A + + S       
Sbjct: 84  VVSTMTNFVHTPPLSVAIAHELG-ADNAGGFDLSAACAGFCHALSIAADAVESG--GSRH 140

Query: 138 ALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKPEI 183
            LV+AT+     +  D  + ++ + F     GAGA  +  SD P I
Sbjct: 141 VLVVATERMTDVI--DLADRSLSFLF---GDGAGAAVVGPSDVPGI 181

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	245
d1hnja1	174	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	100.0
d1u6ea1	184	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	100.0
d1mzja1	181	Priming beta-ketosynthase from the r1128 polyketid	100.0
d1ub7a1	172	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	100.0
d1xpma1	166	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	100.0
d1teda_	372	Polyketide synthase PKS18 {Mycobacterium tuberculo	100.0
d1u0ma1	200	Putative polyketide synthase SCO1206 {Streptomyces	100.0
d1bi5a1	235	Chalcone synthase {Alfalfa (Medicago sativa) [TaxI	100.0
d1m3ka1	268	Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3	99.46
d1ulqa1	273	Beta-ketoadipyl CoA thiolase {Thermus thermophilus	99.45
d1wdkc1	262	Fatty oxidation complex beta subunit (3-ketoacyl-C	99.34
d1j3na1	249	Beta-ketoacyl-ACP synthase II {Thermus thermophilu	99.31
d1afwa1	269	Thiolase {Baker's yeast (Saccharomyces cerevisiae)	99.27
d1ox0a1	256	Beta-ketoacyl-ACP synthase II {Streptococcus pneum	99.26
d2gfva1	250	Beta-ketoacyl-ACP synthase II {Escherichia coli [T	99.07
d1e5ma1	250	Beta-ketoacyl-ACP synthase II {Synechocystis sp. [	98.99
d1tqya1	216	Actinorhodin polyketide putative beta-ketoacyl syn	98.73
d2vbaa1	253	Beta-ketoacyl-ACP synthase I {Escherichia coli [Ta	98.72
d1tqyb1	208	Actinorhodin polyketide putative beta-ketoacyl syn	98.38
d2ix4a1	270	Beta-ketoacyl-ACP synthase II {Thale cress (Arabid	98.33
d1xpma2	221	3-hydroxy-3-methylglutaryl CoA synthase MvaS {Stap	98.27
d1ub7a2	149	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	97.12
d1u6ea2	148	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	97.04
d1hnja2	143	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	96.66
d1mzja2	153	Priming beta-ketosynthase from the r1128 polyketid	96.48
d1hnja2	143	Ketoacyl-ACP synthase III (FabH) {Escherichia coli	95.75
d1ub7a2	149	Ketoacyl-ACP synthase III (FabH) {Thermus thermoph	95.26
d1mzja2	153	Priming beta-ketosynthase from the r1128 polyketid	93.92
d1u0ma2	148	Putative polyketide synthase SCO1206 {Streptomyces	92.83
d1u6ea2	148	Ketoacyl-ACP synthase III (FabH) {Mycobacterium tu	91.75
d1m3ka2	124	Biosynthetic thiolase {Zoogloea ramigera [TaxId: 3	91.32
d1teda_	372	Polyketide synthase PKS18 {Mycobacterium tuberculo	90.08
d1afwa2	124	Thiolase {Baker's yeast (Saccharomyces cerevisiae)	85.65
d1xhoa_	112	Chorismate mutase {Clostridium thermocellum [TaxId	85.07
d1u0ua2	156	Dihydropinosylvin synthase {Scots pine (Pinus sylv	83.35
d1wdkc2	128	Fatty oxidation complex beta subunit (3-ketoacyl-C	81.78
d1tqyb2	194	Actinorhodin polyketide putative beta-ketoacyl syn	81.72
d1ulqa2	125	Beta-ketoadipyl CoA thiolase {Thermus thermophilus	80.72
d1bi5a2	154	Chalcone synthase {Alfalfa (Medicago sativa) [TaxI	80.13

>d1hnja1 c.95.1.2 (A:1-174) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-41  Score=268.35  Aligned_cols=168  Identities=21%  Similarity=0.251  Sum_probs=158.0

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEE
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITC   80 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~   80 (245)
                      |..+|.|+|+|+|+++++|+|+.+.++.+++|+. ++||++||+..++++..+|+.+|+++||+++ +++++|||+||++
T Consensus         1 m~a~I~g~g~ylP~~~v~n~el~~~~~~~~~~i~~~~Gi~~r~~~~~~~~~~~la~~Aa~~al~~a-~~~~~~Id~li~~   79 (174)
T d1hnja1           1 MYTKIIGTGSYLPEQVRTNADLEKMVDTSDEWIVTRTGIRERHIAAPNETVSTMGFEAATRAIEMA-GIEKDQIGLIVVA   79 (174)
T ss_dssp             CEEEEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHHCCCEEEECCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEE
T ss_pred             CccEEEEEEEECCCCcccHHHHHHHhCCCHHHHHhccCcceeeecCCCccchHHHHHHHHHhhhhc-ccccccccEEEEe
Confidence            5689999999999999999999999999999998 8999999999999999999999999999997 9999999999999


Q ss_pred             eccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCcccccccc
Q psy2407          81 SESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTME  160 (245)
Q Consensus        81 t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~  160 (245)
                      |++|++..|+.+..||++||+ +++++||++++|+|+++||++|..++++|.+  +++|||++|..|..+++++  +.+ 
T Consensus        80 s~~~~~~~P~~a~~v~~~Lgl-~~~~~~di~~~C~g~~~al~~A~~~i~sg~~--~~~Lvv~~e~~S~~~~~~d--~~~-  153 (174)
T d1hnja1          80 TTSATHAFPSAACQIQSMLGI-KGCPAFDVAAACAGFTYALSVADQYVKSGAV--KYALVVGSDVLARTCDPTD--RGT-  153 (174)
T ss_dssp             CSCCSCSSSCHHHHHHHHHTC-CSSCEEEECCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECHHHHSCTTC--HHH-
T ss_pred             cCCccccccchhhhhhhccCC-CchhhhhhhhhhccHHHHHHHHHHHHhcCCc--ceeEEEeeehhhcccCCCC--CCe-
Confidence            999999999999999999999 5899999999999999999999999999966  9999999999999998877  332 


Q ss_pred             cccccccccceeEEEEecCC
Q psy2407         161 WAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       161 ~~~~~~~~GDGAaA~ll~~~  180 (245)
                          ..+|||||+|++|++.
T Consensus       154 ----~~lfGDgA~A~vl~~~  169 (174)
T d1hnja1         154 ----IIIFGDGAGAAVLAAS  169 (174)
T ss_dssp             ----HTTBCCEEEEEEEEEE
T ss_pred             ----EEEeceeeEEEEEEeC
Confidence                3579999999999874

>d1mzja1 c.95.1.2 (A:3-183) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=100.00  E-value=1.1e-39  Score=263.23  Aligned_cols=167  Identities=19%  Similarity=0.225  Sum_probs=156.6

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      ..+|.|+|+|+|+++++|+|+.+.++.+++|+. ++||++||++.++|++.+|+++|+++||+++ |++++|||+||++|
T Consensus         9 ~arI~g~g~ylP~~~v~n~e~~~~~~~~~~~i~~~tGi~~R~~~~~~e~~~~ma~~Aa~~aL~~a-~~~~~dId~li~~s   87 (181)
T d1mzja1           9 FSRVLGVGSYRPRREVSNKEVCTWIDSTEEWIETRTGIRSRRIAEPDETIQVMGVAASRRALEHA-GVDPAEIDLVVVST   87 (181)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHTTTSSCCHHHHHHHHCCSEEECCCTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEEC
T ss_pred             ccEEEEEEEECCCceecHHHHHHHcCCCHHHHHhccCcceehhhccCCcHHHHhHHHHHhhhhhc-cCChhHCeEEEEec
Confidence            478999999999999999999999999999998 8999999999999999999999999999997 99999999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      ++|++..|+.+..+|++||+ +++.+||++++|+|+++||++|..++++|.+  +++|||++|.+|..++++|  +.+  
T Consensus        88 ~~~~~~~p~~a~~v~~~l~~-~~~~~~Dv~~~C~g~~~aL~~A~~~i~~~~~--~~~LvV~~e~~s~~~~~~d--~~~--  160 (181)
T d1mzja1          88 MTNFVHTPPLSVAIAHELGA-DNAGGFDLSAACAGFCHALSIAADAVESGGS--RHVLVVATERMTDVIDLAD--RSL--  160 (181)
T ss_dssp             SCCCCCSSCHHHHHHHHHTC-TTCEEEEEECGGGHHHHHHHHHHHHHHHSSC--SCEEEEEEEEGGGGSCSSC--TTT--
T ss_pred             cCCccccccHHHHHHHhhcC-CCccceeHHhhhccHHHHHHHHhCHhhcCCC--ceeEEeeeccccccCCCCC--cce--
Confidence            99999999999999999998 5899999999999999999999999999966  9999999999999998877  222  


Q ss_pred             ccccccccceeEEEEecCC
Q psy2407         162 AFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~  180 (245)
                         ..+|||||+|+||++.
T Consensus       161 ---~~lfGDGAaA~ll~~~  176 (181)
T d1mzja1         161 ---SFLFGDGAGAAVVGPS  176 (181)
T ss_dssp             ---TTTBCEEEEEEEEEEE
T ss_pred             ---EEEeeeeeEEEEEEeC
Confidence               4579999999999864

>d1ub7a1 c.95.1.2 (A:2-173) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.3e-39  Score=260.67  Aligned_cols=165  Identities=13%  Similarity=0.172  Sum_probs=154.9

Q ss_pred             EEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEecc
Q psy2407           5 GIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSES   83 (245)
Q Consensus         5 ~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~   83 (245)
                      +|.++|+|+|+++++|+++.+..+.+.+++. ++||++||++.++|+..+|+.+|+++||+++ |++++|||+||++|++
T Consensus         2 gI~~ig~ylP~~~v~n~~~~~~~~~~~~~i~~~~Gi~~R~~~~~~e~~~~ma~~Aa~~aL~~a-gi~~~dIdlli~~s~t   80 (172)
T d1ub7a1           2 GILALGAYVPERVMTNADFEAYLDTSDEWIVTRTGIKERRVAAEDEYTSDLAFKAVEDLLRRH-PGALEGVDAVIVATNT   80 (172)
T ss_dssp             EEEEEEEECCSEEEEHHHHHTTSSCCHHHHHHHTCCCEEEECCTTCCHHHHHHHHHHHHHHHS-TTTTTTEEEEEEECSS
T ss_pred             ceeEEEEECCCceEcHHHHHHHhCCCHHHHHhccCceeeeeccccccccHHHHHHHHHHHhhc-CcccccceEEEEeccc
Confidence            7999999999999999999999999999988 8999999999999999999999999999997 9999999999999999


Q ss_pred             CCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccccc
Q psy2407          84 GIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAF  163 (245)
Q Consensus        84 ~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~  163 (245)
                      |++..|+.+.+|+++||.  ++++||++++|+|++.+|++|..++++|.+  +++|||++|.+|..+++++  +.+    
T Consensus        81 ~~~~~p~~a~~v~~~Lg~--~~~~~di~~~C~g~~~al~~a~~~~~~~~~--~~~Lvv~~e~~S~~~~~~d--~~~----  150 (172)
T d1ub7a1          81 PDALFPDTAALVQARFGL--KAFAYDLLAGCPGWIYALAQAHALVEAGLA--QKVLAVGAEALSKIIDWND--RAT----  150 (172)
T ss_dssp             CSEEESCHHHHHHHHTTC--CCEEEEEECSTTHHHHHHHHHHHHHHTTSC--SEEEEEEEECGGGTSCTTC--HHH----
T ss_pred             ccccccchHHHHHHHhcc--CccceeehhccccHHHHHHHHhhhhhcCCc--ceeEEecccccccccCCCC--cCe----
Confidence            999999999999999995  588999999999999999999999999966  9999999999999998877  222    


Q ss_pred             ccccccceeEEEEecCCC
Q psy2407         164 FEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       164 ~~~~~GDGAaA~ll~~~~  181 (245)
                       ..+|||||+|+||++.+
T Consensus       151 -~~lfGDgAaA~ll~~~~  167 (172)
T d1ub7a1         151 -AVLFGDGGGAAVVGKVR  167 (172)
T ss_dssp             -HTTBCCEEEEEEEECCC
T ss_pred             -EEEecceeEEEEEEEcC
Confidence             35799999999998865

>d1xpma1 c.95.1.2 (A:2-167) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.7e-38  Score=250.89  Aligned_cols=164  Identities=37%  Similarity=0.615  Sum_probs=151.8

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCCChHHHh-hccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEe
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKLDTVRFE-NLLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCS   81 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~~~~~~~-~~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t   81 (245)
                      .|+|.++++|+|+++++++|+++..|.+.+|+. ++|+++|+++.++|++.+|+++|+++||++. +  +++||+||++|
T Consensus         1 ~VgI~~~~~ylP~~~v~~~e~~~~~g~~~~~i~~~~Gi~~r~~~~~~E~~~~ma~~Aa~~al~~~-~--~~~id~li~~t   77 (166)
T d1xpma1           1 AIGIDKINFYVPKYYVDMAKLAEARQVDPNKFLIGIGQTEMAVSPVNQDIVSMGANAAKDIITDE-D--KKKIGMVIVAT   77 (166)
T ss_dssp             CEEEEEEEEECCSEEEEHHHHHHHTTSCHHHHHTTTCCSEEEECCTTCCHHHHHHHHHHTTCCHH-H--HHHEEEEEEEC
T ss_pred             CeeEeEEEEECCCeEEcHHHHHHHhCCCHHHHHHhcCcEEEEeCCCccCHHHHHHHHHHhhhccc-c--CCCCCeEEEec
Confidence            389999999999999999999999999999998 8999999999999999999999999999885 4  78999999999


Q ss_pred             ccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccccCccccccccc
Q psy2407          82 ESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFVTEDKNELTMEW  161 (245)
Q Consensus        82 ~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~  161 (245)
                      +++++..|+.+..+++.||+++++.+||++++|+||++||++|..++++|..  +++|||++|..+..+++.+       
T Consensus        78 ~~~~~~~p~~a~~v~~~lg~~~~~~~~dv~~~C~g~~~al~~A~~~i~~~~~--~~alvV~sd~~~~~~~~~~-------  148 (166)
T d1xpma1          78 ESAVDAAKAAAVQIHNLLGIQPFARCFEMKEACYAATPAIQLAKDYLATRPN--EKVLVIATDTARYGLNSGG-------  148 (166)
T ss_dssp             SSCSBSSSCHHHHHHHHTTCCSSCEEEEEESTTTTHHHHHHHHHHHHTTCTT--CEEEEEEEEEECCCTTCSS-------
T ss_pred             cccccccchhHHHHHHhhccccceEEeeecccHHHHHHHHHHHhhHHhcCCC--CeEEEEEEceEeccCCCCC-------
Confidence            9999999999999999999987899999999999999999999999999955  9999999999887765433       


Q ss_pred             ccccccccceeEEEEecCCC
Q psy2407         162 AFFEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       162 ~~~~~~~GDGAaA~ll~~~~  181 (245)
                         +++|||||+|+||+++|
T Consensus       149 ---~~~fGDGA~A~ll~~~P  165 (166)
T d1xpma1         149 ---EPTQGAGAVAMVIAHNP  165 (166)
T ss_dssp             ---GGGCEEEEEEEEEEESC
T ss_pred             ---CccCCCeeEEEEEecCC
Confidence               45799999999999876

>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.2e-35  Score=260.60  Aligned_cols=234  Identities=13%  Similarity=0.100  Sum_probs=176.4

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHcCC------ChHH---Hh-hccceeeeecCCC-----------------------C
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYRKL------DTVR---FE-NLLMQQKSVSLPY-----------------------E   49 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~~~------~~~~---~~-~~Gi~~r~~~~~~-----------------------e   49 (245)
                      ..+|.|+|+|+|+++|+|+|+.++++.      ..++   |. ++||++||++.++                       |
T Consensus        11 ~a~I~g~g~~~P~~~v~n~e~~~~~~~~~~~~~~~~~~~ri~~~tGI~~R~~~~~~~~~~~~~~~~~~~~~~~r~~~~~e   90 (372)
T d1teda_          11 VAVIEGLATGTPRRVVNQSDAADRVAELFLDPGQRERIPRVYQKSRITTRRMAVDPLDAKFDVFRREPATIRDRMHLFYE   90 (372)
T ss_dssp             EEEEEEEEEECCSCEEEHHHHHHHHHTC----CCTTHHHHHHHTSCCSEEECSSCTTSTTHHHHTTCSSCHHHHHHHHHH
T ss_pred             eEEEEEEEEeCCCeEEcHHHHHHHHHhhcCChHHHHHHHHHHHccCCcccceeccccccchhhhhhcCCCHHHHHHHHHh
Confidence            468999999999999999999887531      1222   33 6899999987542                       4


Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-CcchhHHHHHHHHHHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~~C~~~~~aL~~A~~~i  128 (245)
                      ++.+|+++|+++||+++ |++++|||+||++|++ ++..|+++.+|+++||+++.+..++++ .||+|++.||++|..+|
T Consensus        91 ~~~~la~~Aa~~aL~~a-g~~~~dId~lI~~t~t-~~~~P~~a~~v~~~LGl~~~~~~~~~~~~gC~g~~~aL~~A~~~l  168 (372)
T d1teda_          91 HAVPLAVDVSKRALAGL-PYRAAEIGLLVLATST-GFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYV  168 (372)
T ss_dssp             HHHHHHHHHHHHHHTTC-CCCGGGEEEEEEEESS-CCCSSCHHHHHHHHHTCCTTCEEEEEESCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHc-CCCHHHCCEEEEeccC-CCCCchHHHHHHhhhccCCceeEeeccccCccHHHHHHHHHHHHH
Confidence            57799999999999997 9999999999999987 588999999999999997677778885 59999999999999999


Q ss_pred             hcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC---CeeEEeecccccccccccc-----
Q psy2407         129 LSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP---EIFQFDIGSNGYYSFEVMD-----  200 (245)
Q Consensus       129 ~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~---~i~~~~~~~~g~~~~~~~~-----  200 (245)
                      ++|..  ++||||++|.++..+++.+. ....  +...+|||||+|+||++++   ++....+..++++...+++     
T Consensus       169 ~sg~~--~~~LVV~~E~~s~~~~~~d~-~~~~--~~~~lfGDGAaA~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (372)
T d1teda_         169 RAHPA--MKALVVCIELCSVNAVFADD-INDV--VIHSLFGDGCAALVIGASQVQEKLEPGKVVVRSSFSQLLDNTEDGI  243 (372)
T ss_dssp             HHSTT--CEEEEEEEEECGGGCCCCSS-HHHH--HHHHHBCEEEEEEEEEEECTTSCCCTTCEEEEEEEEEECTTCTTSE
T ss_pred             hcCCC--ccceeeeehhhcccccCCCc-chhh--hhhhhhcccceeEEeccCCcccccCCceeEEecccccccCCCcccc
Confidence            99955  99999999999887765441 1111  1245799999999998643   1111111122332222111     


Q ss_pred             ccCCCC-CCCcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         201 TCRPIP-DSEAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       201 ~~~p~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .|.... ....++++.......+.+.+++++++++.|++++++.
T Consensus       244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~did  287 (372)
T d1teda_         244 VLGVNHNGITCELSENLPGYIFSGVAPVVTEMLWDNGLQISDID  287 (372)
T ss_dssp             EEEEETTEEEEEECTTHHHHHHHHHHHHHHHHHHHTTCCGGGCS
T ss_pred             ccCCCCCcceeechHHHHHHHHHHHHHHHHHHHHhcCCCHHHhh
Confidence            011011 1124777777777899999999999999999988764

>d1u0ma1 c.95.1.2 (A:2-201) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

Probab=100.00  E-value=3.1e-34  Score=234.50  Aligned_cols=170  Identities=15%  Similarity=0.198  Sum_probs=144.0

Q ss_pred             EEeEEeEecCCceecHHHHHHHcCC------ChHH---Hh-hccceeeeecCCCC-----------------CHHHHHHH
Q psy2407           5 GIEAINLYGGSVFIDVIELAKYRKL------DTVR---FE-NLLMQQKSVSLPYE-----------------DPVSFAIN   57 (245)
Q Consensus         5 ~I~~i~~~lP~~~v~~~~~~~~~~~------~~~~---~~-~~Gi~~r~~~~~~e-----------------~~~~la~~   57 (245)
                      .|.++++|+|+++++|+|+.+....      ..++   +. ++||++||++.++|                 .+.+|+++
T Consensus         2 ~i~~~a~~~P~~~v~n~e~~e~~~~~~~~~~~~~~~~~i~~~tGI~~R~~~~~~e~~~~~~~~~~~~~~~~~~a~~la~~   81 (200)
T d1u0ma1           2 TLCRPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGFEDRNKVYEREAKSRVPA   81 (200)
T ss_dssp             EECCCEEECCSEEEEHHHHHHHHHHHHTTCTTHHHHHHHHHHTCCCEEEESSCHHHHTSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             eeccceEECCCeeEcHHHHHHHHHHhCCCchhHHHHHHHHHhCCCCeeeEECChhhhccCCCHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999875421      1122   33 78999999987654                 57899999


Q ss_pred             HHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHHHHHHhcCCCCCC
Q psy2407          58 AAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMAINFILSKVSPGA  136 (245)
Q Consensus        58 Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A~~~i~sg~~~~~  136 (245)
                      |+++||+++ |++++|||+||++|+++ +..|+.+..++++||+++++.++++ ++||+|++.+|++|..++++|..  +
T Consensus        82 Aa~~aL~~a-g~~~~dId~lI~~s~t~-~~~P~~aa~v~~~lg~~~~~~~~~i~~~gC~g~~~al~~A~~~l~~~~~--~  157 (200)
T d1u0ma1          82 VIQRALDDA-ELLATDIDVIIYVSCTG-FMMPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPE--A  157 (200)
T ss_dssp             HHHHHHHHH-TCCGGGCSEEEEECSSS-CCSSCHHHHHHHHTTCCTTCEEEEECSCGGGHHHHHHHHHHHHHHHSTT--C
T ss_pred             HHHHHHHHc-CCChhhhheEEEeccCC-CCcchhHHHHHHHHhcCCCeeEeccccchhhHHHHHHHHHHHHHHhCCC--C
Confidence            999999997 99999999999999886 5789999999999999888999999 57999999999999999999955  9


Q ss_pred             eEEEEEeccccccccCcccccccccccccccccceeEEEEecCC
Q psy2407         137 KALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDK  180 (245)
Q Consensus       137 ~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~  180 (245)
                      +||||++|.+|..+++.+.++..  .....+|||||+|+||+.+
T Consensus       158 ~vLvv~~e~~S~~~~~~d~~~~~--~~~~~lFgDGAaA~ll~~~  199 (200)
T d1u0ma1         158 NALIVACEFCSLCYQPTDLGVGS--LLCNGLFGDGIAAAVVRGR  199 (200)
T ss_dssp             EEEEEEEEEGGGGCCTTCCSHHH--HHHHHHBCEEEEEEEEETT
T ss_pred             EEEEEEEeccccccCCCCCChhh--hhcccccccccEEEEEecC
Confidence            99999999999999887633221  1124689999999999864

>d1bi5a1 c.95.1.2 (A:1-235) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=100.00  E-value=7.8e-33  Score=231.36  Aligned_cols=173  Identities=17%  Similarity=0.284  Sum_probs=141.6

Q ss_pred             eEEeEEeEecCCceecHHHHHHHcC----C--C------hHHHh-hccceeeeecCCC----------------------
Q psy2407           4 VGIEAINLYGGSVFIDVIELAKYRK----L--D------TVRFE-NLLMQQKSVSLPY----------------------   48 (245)
Q Consensus         4 ~~I~~i~~~lP~~~v~~~~~~~~~~----~--~------~~~~~-~~Gi~~r~~~~~~----------------------   48 (245)
                      .+|.|+|+|+|+++|+|+++.+++.    .  .      ..++. ++||++||+..++                      
T Consensus        17 a~I~giGt~~P~~~v~n~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~GI~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (235)
T d1bi5a1          17 ATILAIGTANPANCVEQSTYPDFYFKITNSEHKTELKEKFQRMCDKSMIKRRYMYLTEEILKENPNVCEYMAPSLDARQD   96 (235)
T ss_dssp             CEEEEEEEECCSCEEESTTHHHHHHHHTTCTTCHHHHHHHHHHHHHSCCCEEECSCCHHHHHTCHHHHSSSCSCHHHHHH
T ss_pred             cEEEEEEEECCCcEEeHHHHHHHHHHhhccccchhhhhhhhhhhcccCCceeEEecChHhhccCcccccccCccHHHHHH
Confidence            6899999999999999999987641    1  1      12343 7899999997653                      


Q ss_pred             ---CCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee-cCcchhHHHHHHHH
Q psy2407          49 ---EDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL-KQACYSCTAGLQMA  124 (245)
Q Consensus        49 ---e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv-~~~C~~~~~aL~~A  124 (245)
                         ++..+|+++|+++||+++ |++++|||+||++|+||++ .|+.+..+++.||+.+++..+++ +.+|+|++++|++|
T Consensus        97 ~~~~~~~~la~~Aa~~aL~~a-~~~~~dId~lI~~t~t~~~-~p~~~a~~~~~l~~~~~~~~~~~~~~~C~g~~~al~~A  174 (235)
T d1bi5a1          97 MVVVEVPRLGKEAAVKAIKEW-GQPKSKITHLIVCTTSGVD-MPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLA  174 (235)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH-CSCGGGCCEEEEEESSCCC-SSCHHHHHHHHHTCCTTCEEEEEESCCTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHc-CCChhHCcEEEEecccCCc-cCccHHHHHHHHhcCCCceEEeeecCccchHHHHHHHH
Confidence               256789999999999997 9999999999999999854 67778889999888777777665 78999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEeccccccccCcccccccccccccccccceeEEEEecCCC
Q psy2407         125 INFILSKVSPGAKALVIATDISRFFVTEDKNELTMEWAFFEPSGGAGAVAMLISDKP  181 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~~~~~~~~~~~~~~~~~~~~GDGAaA~ll~~~~  181 (245)
                      ..++++|..  ++||||++|.+|..+++.+.. .....+...+|||||+|+||+.+|
T Consensus       175 ~~~i~~~~~--~~vLvV~~E~~S~~~~~~d~~-~~~~~v~~~lFGDGA~A~vl~~~p  228 (235)
T d1bi5a1         175 KDLAENNKG--ARVLVVCSEVTAVTFRGPSDT-HLDSLVGQALFGDGAAALIVGSDP  228 (235)
T ss_dssp             HHHHHTSTT--CEEEEEEEECGGGTCCCCCTT-CHHHHHHHHHBCCEEEEEEEESSC
T ss_pred             HHHHHcCCC--CeEEEEEeeecceecCCCCCC-chhhhcceeeeccceEEEEEecCC
Confidence            999999965  999999999999999876521 111111245799999999999765

>d1m3ka1 c.95.1.1 (A:1-268) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Biosynthetic thiolase
species: Zoogloea ramigera [TaxId: 350]

Probab=99.46  E-value=2.3e-13  Score=114.35  Aligned_cols=110  Identities=5%  Similarity=0.041  Sum_probs=96.7

Q ss_pred             ccceeeeecCCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchh
Q psy2407          37 LLMQQKSVSLPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYS  116 (245)
Q Consensus        37 ~Gi~~r~~~~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~  116 (245)
                      |-+.++.-...+.++.+|+..+++.+|+++ |+++++||.|++++..+....++++..++-..|++..++++.|++.|+|
T Consensus        13 TP~g~~~G~l~~~~~~dL~~~~~~~~l~~~-~i~~~~Id~vi~G~~~~~~~~~n~ar~~al~aglp~~vpa~tv~~~C~S   91 (268)
T d1m3ka1          13 TAVGSFNGAFANTPAHELGATVISAVLERA-GVAAGEVNEVILGQVLPAGEGQNPARQAAMKAGVPQEATAWGMNQLAGS   91 (268)
T ss_dssp             CCCEETTSTTTTCCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCTTSCSCHHHHHHHHTTCCTTSEEEEEECGGGH
T ss_pred             CcccCCCCCcCCCCHHHHHHHHHHHHHHHc-CCCHHHCcEEEEeeccccCcchHHHhHHHHHhCCcccccceeecccCcc
Confidence            434333333467899999999999999997 9999999999999887655677899999999999778999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         117 CTAGLQMAINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       117 ~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      ++.++..|.+.|++|..  +.+|+++.|.+|..
T Consensus        92 g~~Ai~~Aa~~I~~G~~--dvvlagG~EsmS~~  122 (268)
T d1m3ka1          92 GLRAVALGMQQIATGDA--SIIVAGGMESMSMA  122 (268)
T ss_dssp             HHHHHHHHHHHHHTTSC--SCEEEEEEEESTTC
T ss_pred             cchHHHHHHHHHhCCCc--eEEeeccccccccC
Confidence            99999999999999977  99999999999864

>d1ulqa1 c.95.1.1 (A:3-275) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoadipyl CoA thiolase
species: Thermus thermophilus [TaxId: 274]

Probab=99.45  E-value=3.2e-13  Score=113.75  Aligned_cols=101  Identities=12%  Similarity=0.079  Sum_probs=92.0

Q ss_pred             CCCCCHHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCC-CCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNLSNIDKNSIELIITCSESGID-FGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~-~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      ..+.++.+|+..+++.+|+++ |+++++||.||++++.+.. ...+++..++-..|++..++++.|++.|+|++.++..|
T Consensus        19 l~~~~~~dL~~~a~~~al~~~-~i~~~~Id~vi~G~v~~~g~~~~n~aR~~al~aGlp~~vp~~tVn~~CaSg~~Ai~~a   97 (273)
T d1ulqa1          19 LASVRPDDLLAHALSVLVDRS-GVPKEEVEDVYAGCANQAGEDNRNVARMALLLAGFPVEVAGCTVNRLCGSGLEAVAQA   97 (273)
T ss_dssp             TTTSCHHHHHHHHHHHHHHHH-TCCGGGCCEEEEECSCCSSTTTTTHHHHHHHHTTCCTTCEEEEEECGGGHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHc-CCCHHHCCEEEEEeccccccccccHHHHHHHHcCCCCccceEEEecccchHHHHHHHH
Confidence            457899999999999999997 9999999999999887643 35678999999999987899999999999999999999


Q ss_pred             HHHHhcCCCCCCeEEEEEecccccc
Q psy2407         125 INFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .+.|++|..  +.+|+++.|.+|..
T Consensus        98 ~~~I~~G~~--d~~lagG~EsmS~~  120 (273)
T d1ulqa1          98 ARAIWAGEG--KVYIGSGVESMSRA  120 (273)
T ss_dssp             HHHHHTTSC--SEEEEEEEEESSSC
T ss_pred             HHHHhcCCC--ccceeeeccccchh
Confidence            999999977  99999999999965

>d1wdkc1 c.95.1.1 (C:2-263) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase)
species: Pseudomonas fragi [TaxId: 296]

Probab=99.34  E-value=2.9e-12  Score=107.14  Aligned_cols=101  Identities=10%  Similarity=0.102  Sum_probs=91.5

Q ss_pred             CCCCCHHHHHHHHHHHHHHh-cCCCCcCCcCEEEEEeccCC-CCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDN-LSNIDKNSIELIITCSESGI-DFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQM  123 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~-a~g~~~~dId~li~~t~~~~-~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~  123 (245)
                      ..+.++.+|+..+++++|++ + |+++++||.||+++..+. ...+++++.++-..|++..++++.|++.|+|++.++..
T Consensus        25 ~~~~~~~dL~~~~i~~~l~r~a-gi~~~~Id~vi~G~v~~~~~~g~n~aR~~al~ag~p~~vp~~tV~~~C~Sgl~Ai~~  103 (262)
T d1wdkc1          25 HRNTRAEDMSAHLISKVLERNS-KVDPGEVEDVIWGCVNQTLEQGWNIARMASLMTQIPHTSAAQTVSRLCGSSMSALHT  103 (262)
T ss_dssp             TTTCCHHHHHHHHHHHHHHHCT-TSCGGGEEEEEEECSSBSBTTTTTHHHHHHTTSSSCTTSEEEEEECGGGHHHHHHHH
T ss_pred             ccCCCHHHHHHHHHHHHHHhcC-CCCHHHeeEEEEEeecccccccccchhhhHhhhhcccccchhhccccccHHHHHHHH
Confidence            35778999999999999996 6 999999999999988764 34578899999999998889999999999999999999


Q ss_pred             HHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         124 AINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       124 A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      |.+.|++|..  +.+|+++.|.+|..
T Consensus       104 aa~~I~sG~~--dvvlAgGvEsmS~~  127 (262)
T d1wdkc1         104 AAQAIMTGNG--DVFVVGGVEHMGHV  127 (262)
T ss_dssp             HHHHHHTTSC--SEEEEEEEEETTTS
T ss_pred             HHHHHHhhcC--Cceeeecccccccc
Confidence            9999999977  99999999999874

>d1j3na1 c.95.1.1 (A:1-249) Beta-ketoacyl-ACP synthase II {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thermus thermophilus [TaxId: 274]

Probab=99.31  E-value=5.6e-11  Score=98.19  Aligned_cols=173  Identities=14%  Similarity=0.120  Sum_probs=111.6

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHhhccceeeee---------------cCCCCCHHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFENLLMQQKSV---------------SLPYEDPVSFAINAA   59 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~~~Gi~~r~~---------------~~~~e~~~~la~~Aa   59 (245)
                      |++|.|.|+|...|.-. +.+++.+.+  |.+   + .++...+...+..               ...-.....++..|+
T Consensus         1 M~rVaItG~G~vsp~g~-~~~e~w~~l~~G~s~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~aa   79 (249)
T d1j3na1           1 MRRVVVTGLGALTPIGV-GQEAFHKAQLAGKSGVRPITRFDASALPVRIAAEVDVDPGAYLDRKELRRLDRFVQYALIAA   79 (249)
T ss_dssp             CCCEEEEEEEEEETTEE-SHHHHHHHHHHTCCCEEECCSSCCTTSSCCEEECCCCCGGGTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CCcEEEECCEeECCCcC-CHHHHHHHHHcCCCccccCCccccccCCccccccccccccccccHHHHhhCCHHHHHHHHHH
Confidence            78899999999999864 666665432  211   0 0000000000000               000123467899999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC--------------------------CCCcHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID--------------------------FGKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~--------------------------~~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |+++++++    .|++++..+..                          .....+..|+..+|+.  -+++.
T Consensus        80 ~~Al~dA-Gl~~~~~~~~~~gv~~Gs~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~~gl~--Gp~~t  156 (249)
T d1j3na1          80 QLALEDA-GLKPEDLDPERVGTLVGTGIGGMETWEAQSRVFLERGPNRISPFFIPMMIANMASAHIAMRYGFT--GPSST  156 (249)
T ss_dssp             HHHHHHH-TCCGGGSCGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCBCC
T ss_pred             HHHHHHc-CCChhHcCCccEEEEEEECCCcccccccccccccccCccccChhhhccccchhhhhhhHhhcCCC--CCccc
Confidence            9999997 99876543    55666543320                          0124567899999994  47899


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cCcc--cc-ccccccc--ccccccceeE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TEDK--NE-LTMEWAF--FEPSGGAGAV  173 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~~~--~~-~~~~~~~--~~~~~GDGAa  173 (245)
                      ++.+|+|++.||..|..+|++|.+  +.+||.++|......           ...+  |+ +..|+..  ..++.|+||+
T Consensus       157 v~~aCaSsl~Ai~~A~~~i~~G~~--d~alvgg~d~~~~p~~~~~f~~~~~ls~~~~~p~~~~rPFd~~~dG~v~gEGa~  234 (249)
T d1j3na1         157 VVTACATGADALGSALRMIQLGEA--DLVLAGGTEAAITPMAIGAFAVMRALSTRNEEPEKASRPFTLSRDGFVMGEGAG  234 (249)
T ss_dssp             BCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCCBCBBCEEE
T ss_pred             cccccchHHHHHHHHHHHHHcCCC--CeeeecchHhhhCcHHHHHHHhCCcccCCCCCCCCCCCCccCCCCCEeeEeEEE
Confidence            999999999999999999999977  999999999753311           0000  00 1112221  1367999999


Q ss_pred             EEEecC
Q psy2407         174 AMLISD  179 (245)
Q Consensus       174 A~ll~~  179 (245)
                      ++||++
T Consensus       235 ~lvLe~  240 (249)
T d1j3na1         235 VLVLEA  240 (249)
T ss_dssp             EEEEEE
T ss_pred             EEEEcc
Confidence            999976

>d1afwa1 c.95.1.1 (A:25-293) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Thiolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.27  E-value=7.2e-12  Score=105.05  Aligned_cols=102  Identities=14%  Similarity=0.064  Sum_probs=90.2

Q ss_pred             CCCCCHHHHHHHHHHHHHHhc---CCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeecCcchhHHHHHH
Q psy2407          46 LPYEDPVSFAINAAAPLIDNL---SNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQ  122 (245)
Q Consensus        46 ~~~e~~~~la~~Aa~~aL~~a---~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~  122 (245)
                      ..+.++.+|+..+++.+|+++   .+++|++||.||+++..+....++++..+.-..|++..++++.|++.|+|++.++.
T Consensus        30 l~~~~~~~L~~~~i~~~l~r~~~~~~idp~~Id~vi~G~v~~~g~~~~~aR~~al~aglp~~vpa~tVnr~CaSg~~Ai~  109 (269)
T d1afwa1          30 FKDVNTDYLLYNFLNEFIGRFPEPLRADLNLIEEVACGNVLNVGAGATEHRAACLASGIPYSTPFVALNRQCSSGLTAVN  109 (269)
T ss_dssp             TTTCCHHHHHHHHHHHHHHTSCHHHHTCGGGCCCEEEECSSSBGGGHHHHHHHHHHTTCCTTSCEEEEECGGGHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCccccCChhhcCEEEeccccccccccccchhhhhhccccccccchhccccchHHHHHHH
Confidence            467889999999999999863   16999999999999876544455778888889999878999999999999999999


Q ss_pred             HHHHHHhcCCCCCCeEEEEEecccccc
Q psy2407         123 MAINFILSKVSPGAKALVIATDISRFF  149 (245)
Q Consensus       123 ~A~~~i~sg~~~~~~aLVv~~e~~s~~  149 (245)
                      .|.+.|++|..  +.+|+++.|.+|..
T Consensus       110 ~Aa~~I~~G~~--divlagG~EsmS~~  134 (269)
T d1afwa1         110 DIANKIKVGQI--DIGLALGVESMTNN  134 (269)
T ss_dssp             HHHHHHHTTSC--SEEEEEEEEEHHHH
T ss_pred             HHHHHHhhccc--cceeeeeccccccc
Confidence            99999999977  99999999999864

>d2gfva1 c.95.1.1 (A:2-251) Beta-ketoacyl-ACP synthase II {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Escherichia coli [TaxId: 562]

Probab=99.07  E-value=4.1e-09  Score=86.69  Aligned_cols=172  Identities=10%  Similarity=0.035  Sum_probs=108.6

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-c-ceeeee--------cCCCCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-L-MQQKSV--------SLPYEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-G-i~~r~~--------~~~~e~~~~la~~Aa   59 (245)
                      .+|.|.|+|...|-- .+.+++.+.+  |.+         .+.+. +. + +.....        ...-.....|+..|+
T Consensus         2 rrVaItG~G~vtp~G-~~~~~~w~~L~~G~s~i~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~~~~~~l~aa   80 (250)
T d2gfva1           2 RRVVVTGLGMLSPVG-NTVESTWKALLAGQSGISLIDHFDTSAYATKFAGLVKDFNCEDIISRKEQRKMDAFIQYGIVAG   80 (250)
T ss_dssp             CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTCSCCEEECCTTCCCTTTSCHHHHTTSCHHHHHHHHHH
T ss_pred             CeEEEECCeeECCCc-CCHHHHHHHHHcCCCeeecCCcccccccCCccceecccchhhhhhhhHHHhhcCHHHHHHHHHH
Confidence            368999999999987 4566665543  111         00010 00 0 100000        000122467899999


Q ss_pred             HHHHHhcCCCCcCCcC----EEEEEeccCCC-----------------C--------CC-cHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSIE----LIITCSESGID-----------------F--------GK-SMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dId----~li~~t~~~~~-----------------~--------~p-~~a~~l~~~LGl~~~~~~~d  109 (245)
                      ++||+++ |++.++.+    .+++++.....                 .        .+ .++..|+..||++  -+++.
T Consensus        81 ~~Al~dA-g~~~~~~~~~~~gv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~--Gp~~t  157 (250)
T d2gfva1          81 VQAMQDS-GLEITEENATRIGAAIGSGIGGLGLIEENHTSLMNGGPRKISPFFVPSTIVNMVAGHLTIMYGLR--GPSIS  157 (250)
T ss_dssp             HHHHHHH-TCCCCTTTGGGEEEEEECSSCCHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHTTCC--SCEEC
T ss_pred             HHHHHhc-CCCccccCccceEEEEeeccCCcchhhhhHHHHhhccccccccchhhhhhhhHHHHHHHHHhCCC--CCccc
Confidence            9999997 98876543    24555533110                 0        11 3477899999994  47889


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEecccccc-----------ccCc--ccc-ccccccc--ccccccceeE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFF-----------VTED--KNE-LTMEWAF--FEPSGGAGAV  173 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~-----------~~~~--~~~-~~~~~~~--~~~~~GDGAa  173 (245)
                      +..+|+|++.||..|..+|++|.+  +.+||.++|.....           +...  +|. ...|+..  ..++.|+||+
T Consensus       158 v~~aCaSg~~Ai~~A~~~i~~G~~--d~~lvgg~d~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~rdG~v~gEGaa  235 (250)
T d2gfva1         158 IATAQTSGVHNIGHAARIIAYGDA--DVMVAGGAEKASTPLGVGGFGAARALSTRNDNPQAASRPWDKERDGFVLGDGAG  235 (250)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCHHHHCCTTBTTCCSBCBBCEEE
T ss_pred             cccccchhhhhhHHHHHHHHcCCc--chhhcccchhhcCcHHHHHHHhcccccCCCCCCCCccCCCCCCCCCEeeeeEEE
Confidence            999999999999999999999977  99999999964321           1100  000 0112221  1357999999


Q ss_pred             EEEecC
Q psy2407         174 AMLISD  179 (245)
Q Consensus       174 A~ll~~  179 (245)
                      ++||++
T Consensus       236 ~lVLE~  241 (250)
T d2gfva1         236 MLVLEE  241 (250)
T ss_dssp             EEEEEE
T ss_pred             EEEECc
Confidence            999975

>d1e5ma1 c.95.1.1 (A:6-255) Beta-ketoacyl-ACP synthase II {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Synechocystis sp. [TaxId: 1143]

Probab=98.99  E-value=1.3e-08  Score=83.29  Aligned_cols=172  Identities=10%  Similarity=0.037  Sum_probs=108.5

Q ss_pred             ceeEEeEEeEecCCceecHHHHHHHc--CCC---h-HHHh--h-----ccceeeeec---------CCCCCHHHHHHHHH
Q psy2407           2 IKVGIEAINLYGGSVFIDVIELAKYR--KLD---T-VRFE--N-----LLMQQKSVS---------LPYEDPVSFAINAA   59 (245)
Q Consensus         2 ~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---~-~~~~--~-----~Gi~~r~~~---------~~~e~~~~la~~Aa   59 (245)
                      ++|.|.|+|...|-- .+.+++.+.+  |.+   + .++.  .     .|.......         ........++..++
T Consensus         2 ~rVaItG~G~v~p~G-~~~~~~w~~L~~G~~~i~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~~~~~~~~a~   80 (250)
T d1e5ma1           2 KRVVVTGLGAITPIG-NTLQDYWQGLMEGRNGIGPITRFDASDQACRFGGEVKDFDATQFLDRKEAKRMDRFCHFAVCAS   80 (250)
T ss_dssp             CCEEEEEEEEEBTTB-SSHHHHHHHHHTTCCCEEECCSSCCTTSSCCEEECCCSCCGGGTSCHHHHHTSCHHHHHHHHHH
T ss_pred             CeEEEECCeeECCCC-CCHHHHHHHHHcCCCeeccCCccccccccccccceeeecccccccchhhhhhcCcHHHHHHHHH
Confidence            468999999999998 4667766543  211   0 0000  0     010000000         00123457999999


Q ss_pred             HHHHHhcCCCCcCCc----CEEEEEeccCC-----------------CC---------CCcHHHHHHHHcCCCCCcceee
Q psy2407          60 APLIDNLSNIDKNSI----ELIITCSESGI-----------------DF---------GKSMSTYIHHYLGLNRNCRLFE  109 (245)
Q Consensus        60 ~~aL~~a~g~~~~dI----d~li~~t~~~~-----------------~~---------~p~~a~~l~~~LGl~~~~~~~d  109 (245)
                      .+||+++ |++++.+    -.+++++....                 ..         .-..+..++..+|+.  -+++.
T Consensus        81 ~~Al~~A-gl~~~~~~~~~~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~gl~--Gp~~t  157 (250)
T d1e5ma1          81 QQAINDA-KLVINELNADEIGVLIGTGIGGLKVLEDQQTILLDKGPSRCSPFMIPMMIANMASGLTAINLGAK--GPNNC  157 (250)
T ss_dssp             HHHHHHH-TCCCCTTTGGGEEEEEECSSCSHHHHHHHHHHHHHHCGGGSCTTHHHHHSTTHHHHHHHHHHTCC--SCEEC
T ss_pred             HHHHHHc-CCChHhhcCCcceEEEEEeeccccchhhhhHHHhhcCccccCcccchhhhcchhhhhHHHhccCC--CCCcc
Confidence            9999997 9886544    23555553211                 01         113477888899994  47889


Q ss_pred             ecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc-ccc----------ccCc--ccc-ccccccc--ccccccceeE
Q psy2407         110 LKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS-RFF----------VTED--KNE-LTMEWAF--FEPSGGAGAV  173 (245)
Q Consensus       110 v~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~-s~~----------~~~~--~~~-~~~~~~~--~~~~~GDGAa  173 (245)
                      +..+|+|++.||.+|..+|++|.+  +.+||.++|.. +..          +...  ++. +..|+..  ..++.|+||+
T Consensus       158 v~~ACsS~l~Ai~~A~~~i~~G~~--d~~lvGg~~~~~~~~~~~~f~~~~~ls~~~~~p~~~~rPFD~~~dG~~~gEGa~  235 (250)
T d1e5ma1         158 TVTACAAGSNAIGDAFRLVQNGYA--KAMICGGTEAAITPLSYAGFASARALSFRNDDPLHASRPFDKDRDGFVMGEGSG  235 (250)
T ss_dssp             CCCGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCCTTCGGGTCCTTBTTCCSBCBBCEEE
T ss_pred             ccccchhhhhhhHHHhhcccCCcc--cccccccchhhcCcHHHHHHHhcCCccCCCCCCCCccCCCCCCCCCEeeEeeEE
Confidence            999999999999999999999977  99999999964 221          1110  110 1112221  1357899999


Q ss_pred             EEEecC
Q psy2407         174 AMLISD  179 (245)
Q Consensus       174 A~ll~~  179 (245)
                      ++||++
T Consensus       236 ~~vLe~  241 (250)
T d1e5ma1         236 ILILEE  241 (250)
T ss_dssp             EEEEEE
T ss_pred             EEEEee
Confidence            999975

>d1tqya1 c.95.1.1 (A:3-218) Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 1, KasA
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.73  E-value=1.1e-07  Score=75.98  Aligned_cols=92  Identities=14%  Similarity=0.144  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHHHhcCCCCcCCcCE----EEEEeccCC---------------------------CCC----C-cHHH
Q psy2407          50 DPVSFAINAAAPLIDNLSNIDKNSIEL----IITCSESGI---------------------------DFG----K-SMST   93 (245)
Q Consensus        50 ~~~~la~~Aa~~aL~~a~g~~~~dId~----li~~t~~~~---------------------------~~~----p-~~a~   93 (245)
                      ....|+..|+++||+++ |+++++++.    ++++++...                           +..    | ..+.
T Consensus        70 ~~~~~~l~aa~~Al~dA-g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  148 (216)
T d1tqya1          70 RASQFAVACAREAFAAS-GLDPDTLDPARVGVSLGSAVAAATSLEREYLLLSDSGRDWEVDAAWLSRHMFDYLVPSVMPA  148 (216)
T ss_dssp             HHHHHHHHHHHHHHHHH-TCCTTTCCGGGEEEEEECSSTTHHHHHHHHHHHHTTTTCSSCCGGGCCTTTHHHHSTTHHHH
T ss_pred             cchhhHHHHHHHHHHHh-cCCccccccccccccccccccccchhhHHHhhhhhcccccccchhhcccccccccCchHHHH
Confidence            35789999999999997 998766542    334332210                           111    1 3467


Q ss_pred             HHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407          94 YIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS  146 (245)
Q Consensus        94 ~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~  146 (245)
                      .++..+|+.  -+.+.+..+|++++.||..|..+|++|.+  +.+||.++|..
T Consensus       149 ~ia~~~g~~--Gp~~tv~~ACaS~~~Ai~~A~~~i~~G~~--d~~ivGG~d~~  197 (216)
T d1tqya1         149 EVAWAVGAE--GPVTMVSTGCTSGLDSVGNAVRAIEEGSA--DVMFAGAADTP  197 (216)
T ss_dssp             HHHHHHTCC--SCEEEECCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECC
T ss_pred             HHHHhcCcc--ccceeeccccchHHHHHHHHHHHHHcCCC--CEEEEeeeccc
Confidence            889999994  47889999999999999999999999987  99999999975

>d2vbaa1 c.95.1.1 (A:1-253) Beta-ketoacyl-ACP synthase I {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase I
species: Escherichia coli [TaxId: 562]

Probab=98.72  E-value=1.5e-07  Score=76.90  Aligned_cols=172  Identities=10%  Similarity=0.083  Sum_probs=106.7

Q ss_pred             CceeEEeEEeEecCCceecHHHHHHHc--CCC----hHHHhhccceeeeecC---------------CCCCHHHHHHHHH
Q psy2407           1 MIKVGIEAINLYGGSVFIDVIELAKYR--KLD----TVRFENLLMQQKSVSL---------------PYEDPVSFAINAA   59 (245)
Q Consensus         1 m~~~~I~~i~~~lP~~~v~~~~~~~~~--~~~----~~~~~~~Gi~~r~~~~---------------~~e~~~~la~~Aa   59 (245)
                      |+.|.|.|+|...|.-. +.+++.+.+  |.+    ..++...+........               .......+...++
T Consensus         1 m~RVvITG~G~i~p~G~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (253)
T d2vbaa1           1 MKRAVITGLGIVSSIGN-NQQEVLASLREGRSGITFSQELKDSGMRSHVWGNVKLDTTGLIDRKVVRFMSDASIYAFLSM   79 (253)
T ss_dssp             CCCEEEEEEEEEBTTBS-SHHHHHHHHHHTCCCEEECHHHHHTTCSCCEEECCCCCCTTSSCHHHHTTCCHHHHHHHHHH
T ss_pred             CCcEEEEccEEECCCCC-CHHHHHHHHHcCCCccccCCccccccCcccccccccccccccccchhhccchhhhhhhhHHH
Confidence            78899999999999875 556554432  221    1122111111111100               0122455888899


Q ss_pred             HHHHHhcCCCCc------CCcCEEEEEeccCC-------------C--------------CCCcHHHHHHHHcCCCCCcc
Q psy2407          60 APLIDNLSNIDK------NSIELIITCSESGI-------------D--------------FGKSMSTYIHHYLGLNRNCR  106 (245)
Q Consensus        60 ~~aL~~a~g~~~------~dId~li~~t~~~~-------------~--------------~~p~~a~~l~~~LGl~~~~~  106 (245)
                      ..|+.++ ++..      .++ .++.++..+.             .              .....+..|...+|+.  -+
T Consensus        80 ~~a~~~~-~l~~~~~~~~~r~-g~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~is~~~g~~--Gp  155 (253)
T d2vbaa1          80 EQAIADA-GLSPEAYQNNPRV-GLIAGSGGGSPRFQVFGADAMRGPRGLKAVGPYVVTKAMASGVSACLATPFKIH--GV  155 (253)
T ss_dssp             HHHHHHH-TCCHHHHTTCTTE-EEEEECSSCCHHHHHHHHHHHTSTTTHHHHCTTHHHHHSTTHHHHHHHTTTTCC--SC
T ss_pred             HHHHHHh-hccchhccCCCCE-EEEeccccccccccccccccccccCCccccCchhhhccccccccceeccccCcc--cc
Confidence            9999986 8763      234 3344433211             0              0124567788889994  47


Q ss_pred             eeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc----------cC---cccc-ccccccc--ccccccc
Q psy2407         107 LFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV----------TE---DKNE-LTMEWAF--FEPSGGA  170 (245)
Q Consensus       107 ~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~----------~~---~~~~-~~~~~~~--~~~~~GD  170 (245)
                      .+.+..+|+|++.||..|.++|++|.+  +.+||.++|......          ..   .+|. +..|+..  ..++.|+
T Consensus       156 ~~~i~taCaSsl~Ai~~A~~~i~~G~~--d~alvgg~~~~~~~~~~~~~~~~~ls~~~~~~P~~~~rPFD~~~~G~v~gE  233 (253)
T d2vbaa1         156 NYSISSACATSAHCIGNAVEQIQLGKQ--DIVFAGGGEELCWEMACEFDAMGALSTKYNDTPEKASRTYDAHRDGFVIAG  233 (253)
T ss_dssp             EEEEECGGGHHHHHHHHHHHHHHTTSC--SEEEEEEEECCCHHHHHHHHHTTCBCCSCTTSGGGSCCTTBTTCCSBCBBC
T ss_pred             eeeeeccchhHHHHHHHHHHhcchhcc--ceeeecchhhhhcchhhhHHHHHHHhcCCCCCCCCCCCCCCCCCCCEeeee
Confidence            888999999999999999999999977  999999998653221          00   0110 1112221  1357999


Q ss_pred             eeEEEEecC
Q psy2407         171 GAVAMLISD  179 (245)
Q Consensus       171 GAaA~ll~~  179 (245)
                      ||+++||++
T Consensus       234 Ga~~lvLe~  242 (253)
T d2vbaa1         234 GGGMVVVEE  242 (253)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEcc
Confidence            999999975

>d1tqyb1 c.95.1.1 (B:2-209) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=98.38  E-value=1.3e-06  Score=69.17  Aligned_cols=137  Identities=13%  Similarity=0.028  Sum_probs=91.9

Q ss_pred             eeEEeEEeEecCCceecHHHHHHHc--CCC---------hHHHh-hc-cce----eeeecCCC-----CCHHHHHHHHHH
Q psy2407           3 KVGIEAINLYGGSVFIDVIELAKYR--KLD---------TVRFE-NL-LMQ----QKSVSLPY-----EDPVSFAINAAA   60 (245)
Q Consensus         3 ~~~I~~i~~~lP~~~v~~~~~~~~~--~~~---------~~~~~-~~-Gi~----~r~~~~~~-----e~~~~la~~Aa~   60 (245)
                      .|.|.|+|...|--. +.+++.+.+  |.+         ...+. +. |..    .+....+.     .....|+..|+.
T Consensus         1 ~VvITG~G~vsp~g~-~~~~~w~~L~~G~sgi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~   79 (208)
T d1tqyb1           1 SVLITGVGVVAPNGL-GLAPYWSAVLDGRHGLGPVTRFDVSRYPATLAGQIDDFHAPDHIPGRLLPQTDPSTRLALTAAD   79 (208)
T ss_dssp             CEEEEEEEEEETTEE-SHHHHHHHHHTTCCCEEECTTTTGGGSSCCEEECCCSCCHHHHSCTTTGGGCCHHHHHHHHHHH
T ss_pred             CEEEEcceeECCCcC-CHHHHHHHHHcCCCceecCcccCchhcccccccccccccccccCChhHhhcccccccccccccc
Confidence            378999999999875 566665432  211         11110 00 100    00010111     124579999999


Q ss_pred             HHHHhcCCCCcCCcC----EEEEEeccCC-----------------C--------CCC-cHHHHHHHHcCCCCCcceeee
Q psy2407          61 PLIDNLSNIDKNSIE----LIITCSESGI-----------------D--------FGK-SMSTYIHHYLGLNRNCRLFEL  110 (245)
Q Consensus        61 ~aL~~a~g~~~~dId----~li~~t~~~~-----------------~--------~~p-~~a~~l~~~LGl~~~~~~~dv  110 (245)
                      +||+++ |+++++++    .+++++..+.                 .        ..+ ..+..|+..+|++  -+++.+
T Consensus        80 ~Al~~A-g~~~~~~~~~~~g~~~g~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~ia~~~gl~--Gp~~tv  156 (208)
T d1tqyb1          80 WALQDA-KADPESLTDYDMGVVTANACGGFDFTHREFRKLWSEGPKSVSVYESFAWFYAVNTGQISIRHGMR--GPSSAL  156 (208)
T ss_dssp             HHHHHT-TCCGGGSCGGGEEEEEECSSCSHHHHHHHHHHHHHTCGGGSCTTHHHHSSTTHHHHHHHHHHTCC--SSCEEE
T ss_pred             ccchhh-hcccccccccccccccccccccccccchhhhhhccccccccccccccccccccccchhhhccccc--ceeeec
Confidence            999997 99987764    3555653221                 0        012 3467899999994  478889


Q ss_pred             cCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccc
Q psy2407         111 KQACYSCTAGLQMAINFILSKVSPGAKALVIATDIS  146 (245)
Q Consensus       111 ~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~  146 (245)
                      ..+|+|++.||..|.++|++| .  +.+||.++|..
T Consensus       157 ~tACaS~l~Ai~~A~~~I~~G-~--d~~lvGG~d~~  189 (208)
T d1tqyb1         157 VAEQAGGLDALGHARRTIRRG-T--PLVVSGGVDSA  189 (208)
T ss_dssp             ECGGGHHHHHHHHHHHHHHHT-C--SEEEEEEEECC
T ss_pred             cccccHHHHHHHHHHHHHHcC-C--CEEEECccccc
Confidence            999999999999999999999 7  99999999964

>d2ix4a1 c.95.1.1 (A:31-300) Beta-ketoacyl-ACP synthase II {Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoacyl-ACP synthase II
species: Thale cress (Arabidopsis thaliana), mitochondrial isoform [TaxId: 3702]

Probab=98.33  E-value=1e-06  Score=72.09  Aligned_cols=86  Identities=12%  Similarity=0.043  Sum_probs=63.9

Q ss_pred             cHHHHHHHHcCCCCCcceeeecCcchhHHHHHHHHHHHHhcCCCCCCeEEEEEeccccccc-----------cC---ccc
Q psy2407          90 SMSTYIHHYLGLNRNCRLFELKQACYSCTAGLQMAINFILSKVSPGAKALVIATDISRFFV-----------TE---DKN  155 (245)
Q Consensus        90 ~~a~~l~~~LGl~~~~~~~dv~~~C~~~~~aL~~A~~~i~sg~~~~~~aLVv~~e~~s~~~-----------~~---~~~  155 (245)
                      .++..|+..+|+.  -+++.+..+|+|++.||..|..+|++|.+  +.+||.++|......           ..   .+|
T Consensus       157 ~~a~~is~~~~l~--Gp~~~v~~aCaSsl~Ai~~A~~~l~~G~~--d~aivgg~~~~~~p~~~~~~~~~~~ls~~~~~~p  232 (270)
T d2ix4a1         157 MASGHVSMKYGFQ--GPNHAAVTACATGAHSIGDATRMIQFGDA--DVMVAGGTESSIDALSVAGFSRSRALSTKFNSSP  232 (270)
T ss_dssp             HHHHHHHHHHTCC--SCEECBCCGGGHHHHHHHHHHHHHHHTSC--SEEEEEEEECCCSHHHHHHHHHTTCBCCTTTTCG
T ss_pred             hhHHHHHHHhCCC--CCCcccccccchhhHHHHHHHHHHHcCCC--CeeccccchhhhhhhhHHHHHhcccccCCCCCCC
Confidence            4578899999994  47889999999999999999999999977  999999998764321           00   001


Q ss_pred             c-ccccccc--ccccccceeEEEEecC
Q psy2407         156 E-LTMEWAF--FEPSGGAGAVAMLISD  179 (245)
Q Consensus       156 ~-~~~~~~~--~~~~~GDGAaA~ll~~  179 (245)
                      + +..|+..  ..++.|+||+++||++
T Consensus       233 ~~~~rPFD~~a~G~v~gEGaa~~vLe~  259 (270)
T d2ix4a1         233 QEASRPFDCDRDGFVIGEGSGVIVLEE  259 (270)
T ss_dssp             GGSCCTTBTTCCSBCBBCEEEEEEEEE
T ss_pred             CCccCCCCCCCCCEeeEeeEEEEEEee
Confidence            0 1112211  1467999999999986

>d1xpma2 c.95.1.2 (A:168-388) 3-hydroxy-3-methylglutaryl CoA synthase MvaS {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: 3-hydroxy-3-methylglutaryl CoA synthase MvaS
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.27  E-value=3.6e-07  Score=73.57  Aligned_cols=59  Identities=24%  Similarity=0.334  Sum_probs=49.7

Q ss_pred             eEEeeccccccccccccccCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         184 FQFDIGSNGYYSFEVMDTCRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      +.++ ...+.|..+++|||||.... |.+||++|+.||++++.++|++++++.|.++.+|.
T Consensus         2 l~~~-~~~~~y~~~~~DF~rP~~~~~pvvDG~~S~~~Yl~~l~~~~~~~~~~~g~~~~dfd   61 (221)
T d1xpma2           2 LALN-EDAVAYTEDVYDFWRPTGHKYPLVDGALSKDAYIRSFQQSWNEYAKRQGKSLADFA   61 (221)
T ss_dssp             EEEC-SCCEEEECCCCSEECBTTCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCS
T ss_pred             EEEe-CCCEeeeccCccccCCCCCCCCeECCcchHHHHHHHHHHHHHHHHHHcCCChhhhh
Confidence            4444 23577889999999998654 68999999999999999999999999999887664

>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=97.12  E-value=0.00062  Score=50.63  Aligned_cols=83  Identities=13%  Similarity=0.139  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeeec-C---cchhHHHHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFELK-Q---ACYSCTAGLQMAINFI  128 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv~-~---~C~~~~~aL~~A~~~i  128 (245)
                      ....++++++|+++ |++++|||.+|..     +..+.....++++||++++.....+. .   +.++-..+|.   .++
T Consensus        47 ~~vp~~i~~~L~~~-g~~~~dId~~i~H-----qa~~~~~~~i~~~lgi~~~k~~~~~~~~Gn~~sasip~~L~---~~~  117 (149)
T d1ub7a2          47 RVMNTATLEAIEKA-GLTPEDIRLFVPH-----QANLRIIDAARERLGLPWERVAVNVDRYGNTSTASIPLALK---EAV  117 (149)
T ss_dssp             HHHHHHHHHHHHHH-TCCGGGCSEEEEC-----CSCHHHHHHHHHTTTCCGGGBCCCHHHHCBCGGGHHHHHHH---HHH
T ss_pred             HHHHHHHHHHHHhh-ccccccccEEEee-----ccchHHHHHHHhhccchhhHHHHHHHHhcCCcchhHHHHHH---HHH
Confidence            45567889999997 9999999999854     33456778889999997654433342 2   3333333443   444


Q ss_pred             hcCCC-CCCeEEEEEec
Q psy2407         129 LSKVS-PGAKALVIATD  144 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~~e  144 (245)
                      +.+.. +++++|+++.-
T Consensus       118 ~~~~~~~Gd~vll~g~G  134 (149)
T d1ub7a2         118 DAGRIREGDHVLLVSFG  134 (149)
T ss_dssp             HHTSSCTTCEEEEEEEE
T ss_pred             HcCCCCCCCEEEEEEEc
Confidence            44322 56788887653

>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.04  E-value=0.0014  Score=48.68  Aligned_cols=82  Identities=12%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceee-e---c-CcchhHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFE-L---K-QACYSCTAGLQMAIN  126 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d-v---~-~~C~~~~~aL~~A~~  126 (245)
                      .....++++++|+++ |++++|||.++...     ..+..-..+++.||++++..... +   + .++++-..+|..+. 
T Consensus        47 ~~~v~~~i~~~L~~~-gl~~~dId~~i~Hq-----a~~~i~~~v~~~lgl~~ek~~~~~~~~~GNt~sasip~~L~~a~-  119 (148)
T d1u6ea2          47 AFKMGDVGRRAMDAA-GVRPDQIDVFVPHQ-----ANSRINELLVKNLQLRPDAVVANDIEHTGNTSAASIPLAMAELL-  119 (148)
T ss_dssp             HHHHHHHHHHHHHHH-TCCGGGCCEEEECC-----SCHHHHHHHHHHHTCCTTCEECCTHHHHCBCGGGHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHc-CCCcccccEEEecc-----ccHHHHHHHHHhcCCCchhhhhhhHHhhCCCccchHHHHHHHHH-
Confidence            455577899999997 99999999998642     33466778999999975543333 2   2 24555555665443 


Q ss_pred             HHhcCCC-CCCeEEEEE
Q psy2407         127 FILSKVS-PGAKALVIA  142 (245)
Q Consensus       127 ~i~sg~~-~~~~aLVv~  142 (245)
                        +.|.. +++++|+++
T Consensus       120 --~~g~i~~Gd~vll~g  134 (148)
T d1u6ea2         120 --TTGAAKPGDLALLIG  134 (148)
T ss_dssp             --HHTSSCTTCEEEEEE
T ss_pred             --HcCCCCCCCEEEEEE
Confidence              33322 457777775

>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.0032  Score=46.22  Aligned_cols=83  Identities=16%  Similarity=0.202  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcceeee---c-CcchhHHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLFEL---K-QACYSCTAGLQMAINF  127 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~dv---~-~~C~~~~~aL~~A~~~  127 (245)
                      .....++++++|+++ |++++|||.++...     .....-..+++.||++++.....+   + .++++-..+|..+   
T Consensus        43 v~~~~~~i~~~L~~~-g~~~~dId~~i~Hq-----~~~~~~~~~~~~l~l~~~k~~~~~~~~GN~~sasip~~L~~~---  113 (143)
T d1hnja2          43 VTELAHIVDETLAAN-NLDRSQLDWLVPHQ-----ANLRIISATAKKLGMSMDNVVVTLDRHGNTSAASVPCALDEA---  113 (143)
T ss_dssp             HHHHHHHHHHHHHHT-TCCGGGCCEEEECC-----SCHHHHHHHHHHTTCCGGGBCCCHHHHCBCGGGHHHHHHHHH---
T ss_pred             hhhhhHHHHHHHHHh-hhcccccceEEecc-----CchHHHHHHHHhCccchhhhhhhhhhhcccccchHHHHHHHH---
Confidence            345577889999996 99999999998542     234567788999999754333333   2 3555555566543   


Q ss_pred             HhcCCC-CCCeEEEEEe
Q psy2407         128 ILSKVS-PGAKALVIAT  143 (245)
Q Consensus       128 i~sg~~-~~~~aLVv~~  143 (245)
                      ++.|.. +++++|+++.
T Consensus       114 ~~~~~~~~Gd~vll~g~  130 (143)
T d1hnja2         114 VRDGRIKPGQLVLLEAF  130 (143)
T ss_dssp             HHTTCSCTTCEEEEEEE
T ss_pred             HHhCCCCCCCEEEEEEE
Confidence            344321 5578887764

>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=96.48  E-value=0.0045  Score=45.97  Aligned_cols=84  Identities=14%  Similarity=0.177  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce-eeec-Cc-chhHHHHHHHHHHHH
Q psy2407          52 VSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL-FELK-QA-CYSCTAGLQMAINFI  128 (245)
Q Consensus        52 ~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~-~dv~-~~-C~~~~~aL~~A~~~i  128 (245)
                      .....++++++|+++ |++++|||.+++...     .+..-..+++.||++++... ..+. .| |+|...-+. -..++
T Consensus        47 v~~vp~~i~~~L~~~-gl~~~dId~~i~Hq~-----~~~~~~~v~~~lgi~~ek~~~~~~~~~GNt~Sasip~~-L~~~~  119 (153)
T d1mzja2          47 VADVVPAAREALEVA-GLTVGDLVAFVPHQA-----NLRIIDVLVDRLGVPEHVVVSRDAEDTGNTSSASVALA-LDRLV  119 (153)
T ss_dssp             HHHHHHHHHHHHHTT-TCCGGGCSEEEECCS-----CHHHHHHHHHHHTCCTTSEECCTHHHHCBCTTHHHHHH-HHHHH
T ss_pred             HHHHHHHHHHHHHHh-CCCcccCCEEEEcCC-----cHHHHHHHHHHhCCCchhcchhhhhhcCCcccchHHHH-HHHHH
Confidence            455666888999996 999999999986432     35667888999999655322 2332 23 333322222 23344


Q ss_pred             hcCCC-CCCeEEEEE
Q psy2407         129 LSKVS-PGAKALVIA  142 (245)
Q Consensus       129 ~sg~~-~~~~aLVv~  142 (245)
                      +.+.. +++++|+++
T Consensus       120 ~~~~~~~Gd~ill~~  134 (153)
T d1mzja2         120 RSGAVPGGGPALMIG  134 (153)
T ss_dssp             HHTSSCTTCEEEEEE
T ss_pred             HcCCCCCCCEEEEEE
Confidence            44422 457777765

>d1hnja2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Escherichia coli [TaxId: 562]

Probab=95.75  E-value=0.01  Score=43.36  Aligned_cols=60  Identities=8%  Similarity=-0.031  Sum_probs=44.8

Q ss_pred             eEEeeccccccccccccc----cCCCCCC-CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         184 FQFDIGSNGYYSFEVMDT----CRPIPDS-EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       184 ~~~~~~~~g~~~~~~~~~----~~p~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      |+.++++||++++.+...    ..|.... -.|+|+..++..++.+.+++++++++.|+++.++.
T Consensus         1 lst~l~sdG~~~~~l~~p~g~~~~p~~~~~~~m~G~~vf~~av~~~~~~i~~~L~~~g~~~~dId   65 (143)
T d1hnja2           1 ISTHLHADGSYGELLTLPNADRVNPENSIHLTMAGNEVFKVAVTELAHIVDETLAANNLDRSQLD   65 (143)
T ss_dssp             EEEEEEECGGGGGGEECCCCCSSCTTSCCSCEECHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred             CCccEEccCCCCCEEEECCCCCCCCCCCceEEEEChHHhhhhhhhhhHHHHHHHHHhhhcccccc
Confidence            456788999988765321    1121111 14999999999999999999999999999988764

>d1ub7a2 c.95.1.2 (A:174-322) Ketoacyl-ACP synthase III (FabH) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Thermus thermophilus [TaxId: 274]

Probab=95.26  E-value=0.014  Score=42.84  Aligned_cols=59  Identities=14%  Similarity=-0.005  Sum_probs=44.1

Q ss_pred             EEeecccccccccccc----ccCCCCCC----CcccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         185 QFDIGSNGYYSFEVMD----TCRPIPDS----EAGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       185 ~~~~~~~g~~~~~~~~----~~~p~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      +|.+++||++++.+..    ...|....    -.|+|+..++..++.+.++.++++++.|+++.++.
T Consensus         2 ~f~l~sDG~~~~~l~~~~gg~~~p~~~~~~~~~~M~G~~vf~~a~~~vp~~i~~~L~~~g~~~~dId   68 (149)
T d1ub7a2           2 SFVLGADGTGAKELYHACVAPRLPDGTSMKNRLYMNGREVFKFAVRVMNTATLEAIEKAGLTPEDIR   68 (149)
T ss_dssp             EEEEEECGGGCTTEEEESSCSBCTTSCBCCSSCEECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCS
T ss_pred             CcEEeeeCCCCceEEECCCCCCCCCCcCcCCcEEEccHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            4667788887776533    22232221    24999999999999999999999999999998764

>d1mzja2 c.95.1.2 (A:184-336) Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway {Streptomyces sp. r1128 [TaxId: 140437]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Priming beta-ketosynthase from the r1128 polyketide biosynthetic pathway
species: Streptomyces sp. r1128 [TaxId: 140437]

Probab=93.92  E-value=0.034  Score=40.95  Aligned_cols=34  Identities=3%  Similarity=-0.175  Sum_probs=31.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         210 AGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       210 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .|+|+..++..++.+.+++++++++.|++.+++.
T Consensus        36 ~m~G~~v~~~av~~vp~~i~~~L~~~gl~~~dId   69 (153)
T d1mzja2          36 VMDGKRVFRWAVADVVPAAREALEVAGLTVGDLV   69 (153)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHTTTCCGGGCS
T ss_pred             EEcCHHHHHHHHHHHHHHHHHHHHHhCCCcccCC
Confidence            4999999999999999999999999999998764

>d1u0ma2 c.95.1.2 (A:202-349) Putative polyketide synthase SCO1206 {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Putative polyketide synthase SCO1206
species: Streptomyces coelicolor [TaxId: 1902]

Probab=92.83  E-value=0.17  Score=36.68  Aligned_cols=81  Identities=12%  Similarity=0.110  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce--ee----ec-CcchhHHHHHHHHH
Q psy2407          53 SFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FE----LK-QACYSCTAGLQMAI  125 (245)
Q Consensus        53 ~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~--~d----v~-~~C~~~~~aL~~A~  125 (245)
                      .-...+.+++|+++ |++++|||.+++...+     +.+-..+++.||++++...  .+    .+ .+.++-..+|.   
T Consensus        43 ~~~~~~i~~~l~~~-g~~~~did~~~~Hq~~-----~~i~~~i~~~Lgl~~~k~~~s~~~l~~~GN~~sasi~~~L~---  113 (148)
T d1u0ma2          43 EPLAPALKELAGEH-GWDASDLDFYIVHAGG-----PRILDDLSTFLEVDPHAFRFSRATLTEYGNIASAVVLDALR---  113 (148)
T ss_dssp             HHHHHHHHHHHHTT-SCCSSCCSCCEEECSH-----HHHHHHHHHHSCSCGGGGHHHHHHHHHTCBCTTHHHHHHHH---
T ss_pred             HHHHHHHHHHHHHh-CCCHHHCCEEEECCCC-----HHHHHHHHHHhCCChhhhhHHHHHHHhcCCCCcchHHHHHH---
Confidence            44567889999996 9999999988864332     3556788999999765432  22    22 34555554553   


Q ss_pred             HHHhcCCC-CCCeEEEEE
Q psy2407         126 NFILSKVS-PGAKALVIA  142 (245)
Q Consensus       126 ~~i~sg~~-~~~~aLVv~  142 (245)
                      .+++.|.. +++++|+++
T Consensus       114 ~~~~~~~~~~Gd~ill~g  131 (148)
T d1u0ma2         114 RLFDEGGVEEGARGLLAG  131 (148)
T ss_dssp             HHHHSCCCCSSCCCEEEE
T ss_pred             HHHHcCCCCCCCEEEEEE
Confidence            44444432 345565554

>d1u6ea2 c.95.1.2 (A:175-317) Ketoacyl-ACP synthase III (FabH) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Ketoacyl-ACP synthase III (FabH)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.75  E-value=0.11  Score=37.74  Aligned_cols=34  Identities=0%  Similarity=-0.317  Sum_probs=31.3

Q ss_pred             cccchhhHHHHHHHHHHHHHHHHHHhcchhhhhc
Q psy2407         210 AGNADLSLLSYLDCCAQSFKEYKKRVQYKIIVYN  243 (245)
Q Consensus       210 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (245)
                      .|+|+..++..++.+.+++++++++.|++++++.
T Consensus        36 ~m~G~~Vf~~a~~~v~~~i~~~L~~~gl~~~dId   69 (148)
T d1u6ea2          36 RLEGPAVFRWAAFKMGDVGRRAMDAAGVRPDQID   69 (148)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHHHTCCGGGCC
T ss_pred             EeecHHHHHHHHHHHHHHHHHHHHHcCCCccccc
Confidence            5999999999999999999999999999998764

>d1m3ka2 c.95.1.1 (A:269-392) Biosynthetic thiolase {Zoogloea ramigera [TaxId: 350]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Biosynthetic thiolase
species: Zoogloea ramigera [TaxId: 350]

Probab=91.32  E-value=0.45  Score=33.41  Aligned_cols=78  Identities=9%  Similarity=0.050  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAINF  127 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~~  127 (245)
                      -+.|++++|+++ |++.+|||++=+.-     .+.+.+-..++.||++++       +.++..-.||+|.-..+.+++.+
T Consensus        24 Pv~A~~~lL~r~-gl~~~Did~~EinE-----AFA~q~la~~~~l~id~~kvN~~GGaiAlGHP~GaSGarl~~tl~~~L   97 (124)
T d1m3ka2          24 PIPASRKALERA-GWKIGDLDLVEANE-----AFAAQACAVNKDLGWDPSIVNVNGGAIAIGHPIGASGARILNTLLFEM   97 (124)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCSEEEECC-----SBHHHHHHHHHHHCCCGGGBSTTCCHHHHCCCTTTHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHc-CCChhcccHHHhcc-----cchhheeeehHhhCCChhhcCCCCCccccccCcCccchhHHHHHHHHH
Confidence            467899999997 99999999886532     223444556788887532       22333336888888888888888


Q ss_pred             HhcCCCCCCeEEEE
Q psy2407         128 ILSKVSPGAKALVI  141 (245)
Q Consensus       128 i~sg~~~~~~aLVv  141 (245)
                      -+.+.   ++.|+.
T Consensus        98 ~~~~~---~~Glas  108 (124)
T d1m3ka2          98 KRRGA---RKGLAT  108 (124)
T ss_dssp             HHHTC---SEEEEE
T ss_pred             HhcCC---CEEEEE
Confidence            77642   555543

>d1teda_ c.95.1.2 (A:) Polyketide synthase PKS18 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Polyketide synthase PKS18
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=90.08  E-value=0.19  Score=41.89  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=51.3

Q ss_pred             HHHHHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCcce--eee----c-CcchhHHHHHHH
Q psy2407          51 PVSFAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRL--FEL----K-QACYSCTAGLQM  123 (245)
Q Consensus        51 ~~~la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~--~dv----~-~~C~~~~~aL~~  123 (245)
                      ......++.+++|+++ |++++|||.++...     ..+.+-..+++.||++++...  +++    + .++++-..+|  
T Consensus       264 ~~~~~~~~i~~~L~~~-gl~~~did~~i~Hq-----~~~~i~~~i~~~Lgl~~ek~~~s~~~l~~~GN~~sasip~~L--  335 (372)
T d1teda_         264 IFSGVAPVVTEMLWDN-GLQISDIDLWAIHP-----GGPKIIEQSVRSLGISAELAAQSWDVLARFGNMLSVSLIFVL--  335 (372)
T ss_dssp             HHHHHHHHHHHHHHHT-TCCGGGCSCEEECC-----SCHHHHHHHHHHHTCCGGGGHHHHHHHHHHCBCTHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHhc-CCCHHHhhhhhccC-----ccHHHHHHHHHHcCCCHHHhhhhHHHHhccCCcHHHHHHHHH--
Confidence            3556778889999996 99999999988642     234566778999999654332  332    2 2444444444  


Q ss_pred             HHHHHhcCCC-C-CCeEEEE
Q psy2407         124 AINFILSKVS-P-GAKALVI  141 (245)
Q Consensus       124 A~~~i~sg~~-~-~~~aLVv  141 (245)
                       ..+++.|.. + ++++|++
T Consensus       336 -~~~l~~g~~~~g~d~vll~  354 (372)
T d1teda_         336 -ETMVQQAESAKAISTGVAF  354 (372)
T ss_dssp             -HHHHHSCSSSSSSEEEEEE
T ss_pred             -HHHHHhCCCCCCCCEEEEE
Confidence             345555532 1 2445544

>d1afwa2 c.95.1.1 (A:294-417) Thiolase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Thiolase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.65  E-value=0.7  Score=32.36  Aligned_cols=68  Identities=12%  Similarity=0.142  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCC-------cceeeecCcchhHHHHHHHHHH
Q psy2407          54 FAINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRN-------CRLFELKQACYSCTAGLQMAIN  126 (245)
Q Consensus        54 la~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~-------~~~~dv~~~C~~~~~aL~~A~~  126 (245)
                      =-+.|++++|+++ |++.+|||++=+.-     .+....-..++.|+++++       +.++-.-.||+|.-..+.+.+.
T Consensus        25 gPv~Ai~klL~r~-gl~~~Did~~EinE-----AFA~q~l~~~~~l~id~~kvN~~GGaiAlGHP~GaSGarlv~~l~~~   98 (124)
T d1afwa2          25 GPAYAIPKVLEAT-GLQVQDIDIFEINE-----AFAAQALYCIHKLGIDLNKVNPRGGAIALGHPLGCTGARQVATILRE   98 (124)
T ss_dssp             HHHHHHHHHHHHH-TCCGGGCSEEEECC-----SBHHHHHHHHHHHTCCGGGBSTTCCHHHHCBCTTTHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHc-CCCcccCcEEEecc-----chhHHHHHHHHHcCCChhhccccCccceecCCcCCchHHHHHHHHHH
Confidence            4567899999997 99999999886532     223444566778887532       2223333577776666666665


Q ss_pred             H
Q psy2407         127 F  127 (245)
Q Consensus       127 ~  127 (245)
                      +
T Consensus        99 L   99 (124)
T d1afwa2          99 L   99 (124)
T ss_dssp             S
T ss_pred             h
Confidence            4

>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: YjgF-like
family: Chorismate mutase
domain: Chorismate mutase
species: Clostridium thermocellum [TaxId: 1515]

Probab=85.07  E-value=1.1  Score=30.60  Aligned_cols=57  Identities=11%  Similarity=0.106  Sum_probs=37.6

Q ss_pred             CCHHHHHHHHHHHHHH----hcCCCCcCCcCEEEEEeccCCCC--CCcHHHHHHHHcCCCCCcceeeec
Q psy2407          49 EDPVSFAINAAAPLID----NLSNIDKNSIELIITCSESGIDF--GKSMSTYIHHYLGLNRNCRLFELK  111 (245)
Q Consensus        49 e~~~~la~~Aa~~aL~----~a~g~~~~dId~li~~t~~~~~~--~p~~a~~l~~~LGl~~~~~~~dv~  111 (245)
                      ++..+-..+|.+++|+    +. +++++||-.+++ |.|+|-.  +|  | ..++.+|+ .++|.++.+
T Consensus        12 ~n~~e~I~~at~eLl~~ii~~N-~l~~edi~Sv~F-T~T~DL~a~FP--A-~aaR~lG~-~~Vpl~c~~   74 (112)
T d1xhoa_          12 DNTADEIVAETQKLLKEMAEKN-GLEEDDIISIIF-TVTKDLDAAFP--A-IAARNMGW-TSTALMCMN   74 (112)
T ss_dssp             SSSHHHHHHHHHHHHHHHHHHT-TCCGGGEEEEEE-EECTTCCSSCT--H-HHHHHTTC-TTSEEEEEE
T ss_pred             CCCHHHHHHHHHHHHHHHHHHc-CCCHHHEEEEEE-EecCcccccCC--H-HHHhhcCC-CcccccccC
Confidence            4444455566665554    54 999999988887 4556543  45  3 36667999 588877764

>d1u0ua2 c.95.1.2 (A:238-393) Dihydropinosylvin synthase {Scots pine (Pinus sylvestris) [TaxId: 3349]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Dihydropinosylvin synthase
species: Scots pine (Pinus sylvestris) [TaxId: 3349]

Probab=83.35  E-value=3.1  Score=29.89  Aligned_cols=74  Identities=9%  Similarity=0.023  Sum_probs=49.3

Q ss_pred             CCCHHHHHH----HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee------ee-cCcchh
Q psy2407          48 YEDPVSFAI----NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF------EL-KQACYS  116 (245)
Q Consensus        48 ~e~~~~la~----~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~------dv-~~~C~~  116 (245)
                      +.....++.    ...+++|+++ +++.+|||..++..     ..+.+-..+++.|||++.....      +. |...++
T Consensus        34 ~~~Vp~~v~~~i~~~~~~~l~~~-~~~~~did~~i~Hq-----gg~~Ild~v~~~L~L~~~k~~~s~~~l~~~GN~sSas  107 (156)
T d1u0ua2          34 KGAVPDLISANIENCMVEAFSQF-KISDWNKLFWVVHP-----GGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSAC  107 (156)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHGGG-TCCCGGGSEEEECC-----SCHHHHHHHHHHHTCCTTTTHHHHHHHHHHCBCGGGH
T ss_pred             cchhHHHHHHHHHHHHHHHHHHc-CCChhhCceEeecC-----CcHHHHHHHHHHhCCCcccchhhHHHHhhcCCCCccc
Confidence            344555554    4557788886 99999999988642     3346677889999997654432      23 346667


Q ss_pred             HHHHHHHHHHH
Q psy2407         117 CTAGLQMAINF  127 (245)
Q Consensus       117 ~~~aL~~A~~~  127 (245)
                      -...|..+...
T Consensus       108 ip~~L~~~~~~  118 (156)
T d1u0ua2         108 VHFILDQTRKA  118 (156)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            77777665443

>d1wdkc2 c.95.1.1 (C:264-391) Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase) {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Fatty oxidation complex beta subunit (3-ketoacyl-CoA thiolase)
species: Pseudomonas fragi [TaxId: 296]

Probab=81.78  E-value=2.4  Score=29.64  Aligned_cols=77  Identities=9%  Similarity=0.034  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHc----------CCCCCcceeeecCcchhHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYL----------GLNRNCRLFELKQACYSCTAGLQMA  124 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~L----------Gl~~~~~~~dv~~~C~~~~~aL~~A  124 (245)
                      -+.|++++|+++ |++.+|||++=..-.     +.+.+-..++.+          .....+.++-.-.||+|.-.-+.++
T Consensus        25 p~~A~~klL~ra-gl~~~did~~EinEA-----FA~q~l~~~~~~~~~~~~~ekvN~~GGaiAlGHP~GASGaRlv~~l~   98 (128)
T d1wdkc2          25 PVPATQKALKRA-GLNMADIDFIELNEA-----FAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLL   98 (128)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCCEEEECCS-----BHHHHHHHHHHTTCGGGHHHHBSTTCCHHHHCCCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHhhhc-CccccccceEEeecc-----cchhhhhhhhhcccccCCcceecCCCCcccccccccccchhHHHHHH
Confidence            467889999997 999999998865321     222222333343          3333344444556888888888888


Q ss_pred             HHHHhcCCCCCCeEEE
Q psy2407         125 INFILSKVSPGAKALV  140 (245)
Q Consensus       125 ~~~i~sg~~~~~~aLV  140 (245)
                      +.+-+.+.   ++.|+
T Consensus        99 ~~L~~~~~---~~Gla  111 (128)
T d1wdkc2          99 NVMKQNGG---TFGLS  111 (128)
T ss_dssp             HHHHHTTC---SEEEE
T ss_pred             HHHHhcCC---CEEEE
Confidence            88877542   55553

>d1tqyb2 c.95.1.1 (B:210-403) Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB {Streptomyces coelicolor [TaxId: 1902]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Actinorhodin polyketide putative beta-ketoacyl synthase 2, KasB
species: Streptomyces coelicolor [TaxId: 1902]

Probab=81.72  E-value=0.69  Score=34.80  Aligned_cols=76  Identities=7%  Similarity=0.026  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEE-EeccCCCCCCcHHHHHHHHcCCCCCcceee----ec-CcchhHHHHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIIT-CSESGIDFGKSMSTYIHHYLGLNRNCRLFE----LK-QACYSCTAGLQMAINFI  128 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~-~t~~~~~~~p~~a~~l~~~LGl~~~~~~~d----v~-~~C~~~~~aL~~A~~~i  128 (245)
                      ..++.++||+++ +++++|||+|-. +|.|+ ..-+.-...|.+.+|- ..++...    ++ .-+++++..|..+...+
T Consensus        64 ~~~~i~~aL~~a-~i~~~di~~v~ahgtGt~-~~D~~E~~al~~~f~~-~~~~v~s~K~~~GH~~~AsG~~~li~~~~~l  140 (194)
T d1tqyb2          64 LERAIRLALNDA-GTGPEDVDVVFADGAGVP-ELDAAEARAIGRVFGR-EGVPVTVPKTTTGRLYSGGGPLDVVTALMSL  140 (194)
T ss_dssp             HHHHHHHHHHHH-TCCGGGCCEEECCCCCSH-HHHHHHHHHHHHHHCT-TCSEEECGGGGTCBCGGGHHHHHHHHHHHHH
T ss_pred             hhhhhhhhcccc-cccccceeeeeccccCcc-cccHHHhhhhhhhhhc-cccccccccccccccccccccceehhhhhhh
Confidence            356889999997 999999999873 33333 1123445566666764 2343322    32 47788888888888888


Q ss_pred             hcCCC
Q psy2407         129 LSKVS  133 (245)
Q Consensus       129 ~sg~~  133 (245)
                      +.|..
T Consensus       141 ~~g~i  145 (194)
T d1tqyb2         141 REGVI  145 (194)
T ss_dssp             HHTSB
T ss_pred             hhcee
Confidence            88755

>d1ulqa2 c.95.1.1 (A:276-400) Beta-ketoadipyl CoA thiolase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Thiolase-related
domain: Beta-ketoadipyl CoA thiolase
species: Thermus thermophilus [TaxId: 274]

Probab=80.72  E-value=2.7  Score=29.22  Aligned_cols=77  Identities=8%  Similarity=-0.006  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHH--cCCCCC-------cceeeecCcchhHHHHHHHHH
Q psy2407          55 AINAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHY--LGLNRN-------CRLFELKQACYSCTAGLQMAI  125 (245)
Q Consensus        55 a~~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~--LGl~~~-------~~~~dv~~~C~~~~~aL~~A~  125 (245)
                      -+.|++++|+++ |++.+|||++=..-     .+.+..-..++.  |+++++       +.++..-.||+|.-..+.+.+
T Consensus        23 P~~A~~~~L~r~-gl~~~Did~~EinE-----AFAaq~l~~~~~~~l~~d~~kvN~~GGaIAlGHP~GASGari~~tl~~   96 (125)
T d1ulqa2          23 PVPATRKALERA-GLSFSDLGLIELNE-----AFAAQALAVLREWSLSMEDQRLNPNGGAIALGHPLGASGARILTTLVH   96 (125)
T ss_dssp             HHHHHHHHHHHT-TCCGGGCSEEEECC-----SBHHHHHHHHHHHTCCTTCTTBSTTCCHHHHCCCHHHHHHHHHHHHHH
T ss_pred             cHHHHHhHhhcc-CcCccccchheecc-----ccchhHHHHHHHhhccCchhhcCCCCCcccccCCccccchhHHHHHHH
Confidence            578899999997 99999999886431     122223333455  444321       122222347777777777777


Q ss_pred             HHHhcCCCCCCeEEE
Q psy2407         126 NFILSKVSPGAKALV  140 (245)
Q Consensus       126 ~~i~sg~~~~~~aLV  140 (245)
                      .+-+.+   .++.++
T Consensus        97 ~L~~~~---~~~G~a  108 (125)
T d1ulqa2          97 EMRRRK---VQFGLA  108 (125)
T ss_dssp             HHHHTT---CSEEEE
T ss_pred             HHHhcC---CCEEEE
Confidence            777654   255554

>d1bi5a2 c.95.1.2 (A:236-389) Chalcone synthase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: Thiolase-like
superfamily: Thiolase-like
family: Chalcone synthase-like
domain: Chalcone synthase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.13  E-value=6.2  Score=28.11  Aligned_cols=72  Identities=14%  Similarity=0.054  Sum_probs=46.6

Q ss_pred             CCHHHHHH----HHHHHHHHhcCCCCcCCcCEEEEEeccCCCCCCcHHHHHHHHcCCCCCccee------ee-cCcchhH
Q psy2407          49 EDPVSFAI----NAAAPLIDNLSNIDKNSIELIITCSESGIDFGKSMSTYIHHYLGLNRNCRLF------EL-KQACYSC  117 (245)
Q Consensus        49 e~~~~la~----~Aa~~aL~~a~g~~~~dId~li~~t~~~~~~~p~~a~~l~~~LGl~~~~~~~------dv-~~~C~~~  117 (245)
                      .....++.    ..++++|+++ |++.+|||..++..     ..+.+-..+++.|||+++....      +. |..+++-
T Consensus        34 r~Vp~~i~~~i~~~~~~~l~~~-gl~~~di~~~v~Hq-----gg~~Ild~v~~~L~L~~~~~~~s~~vl~~yGN~SSasi  107 (154)
T d1bi5a2          34 KDVPGIVSKNITKALVEAFEPL-GISDYNSIFWIAHP-----GGPAILDQVEQKLALKPEKMNATREVLSEYGNMSSACV  107 (154)
T ss_dssp             SCHHHHHHHHHHHHHHHHHGGG-TCCCTTSSEEEECC-----SSHHHHHHHHHHHTCCGGGGHHHHHHHHHHCBCGGGHH
T ss_pred             cchHHHHHHHHHHHHHHHHHHc-CCCccccceEeecc-----ccHHHHHHHHHHhCCCHHHHHHhHHHHHhcCCCCcccH
Confidence            34555554    4556677786 99999999887532     2346677889999997654332      22 3466666


Q ss_pred             HHHHHHHHH
Q psy2407         118 TAGLQMAIN  126 (245)
Q Consensus       118 ~~aL~~A~~  126 (245)
                      ..+|.....
T Consensus       108 ~~vL~~~~~  116 (154)
T d1bi5a2         108 LFILDEMRK  116 (154)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            667755543