Psyllid ID: psy2470
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | 2.2.26 [Sep-21-2011] | |||||||
| Q7YR39 | 1044 | Putative pre-mRNA-splicin | yes | N/A | 0.506 | 0.416 | 0.309 | 4e-60 | |
| O60231 | 1041 | Putative pre-mRNA-splicin | yes | N/A | 0.506 | 0.417 | 0.309 | 4e-60 | |
| Q17IN5 | 215 | Mediator of RNA polymeras | N/A | N/A | 0.199 | 0.795 | 0.578 | 9e-60 | |
| Q767K6 | 1045 | Putative pre-mRNA-splicin | yes | N/A | 0.506 | 0.416 | 0.307 | 1e-59 | |
| P34498 | 1131 | Probable pre-mRNA-splicin | yes | N/A | 0.505 | 0.383 | 0.296 | 9e-58 | |
| Q54F05 | 1160 | ATP-dependent RNA helicas | no | N/A | 0.488 | 0.361 | 0.304 | 7e-57 | |
| Q7QGX9 | 211 | Mediator of RNA polymeras | yes | N/A | 0.198 | 0.805 | 0.559 | 8e-57 | |
| Q54MH3 | 1106 | Putative pre-mRNA-splicin | no | N/A | 0.487 | 0.377 | 0.315 | 2e-56 | |
| P24384 | 1145 | Pre-mRNA-splicing factor | yes | N/A | 0.495 | 0.371 | 0.307 | 2e-56 | |
| Q9XZT1 | 217 | Mediator of RNA polymeras | no | N/A | 0.205 | 0.811 | 0.550 | 5e-56 |
| >sp|Q7YR39|DHX16_PANTR Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Pan troglodytes GN=DHX16 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 264/510 (51%), Gaps = 75/510 (14%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD 407
R +LK++++SAT+D F++ +A + + G +PV ++Y+ P +Y++ V
Sbjct: 546 RPELKVLVASATMDTARFSTFFD-----DAPVFRIPGRRFPVDIFYTKAPEADYLEACVV 600
Query: 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLKLLILPMHGSLPNNEQI 465
+ ++IH + P GDIL F+ G E+IE +L+ + + +LL+LP++ +LP++ Q
Sbjct: 601 SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA 660
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525
++F+PTP RK+V+ATNIAETS+TI GI+YV+DPGF K + +NP T SL V P SKA
Sbjct: 661 RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA 720
Query: 526 SAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIP--TIPNDPKDVKCDVMFHKVFF 583
SA QRAGRAGRV +G + RL+ + + T+P + +V+
Sbjct: 721 SANQRAGRAGRVAAGKCF-------RLYTAWAYQHELEETTVPEIQRTSLGNVVL----- 768
Query: 584 SFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED 643
LL++ +D +P LA E+L + +G + TT
Sbjct: 769 -----LLKSLGIHDLMHFDFLDPPPYETLLLA---LEQL-----YALGALNHLGELTTS- 814
Query: 644 VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFEC 703
G M E+ DP+L K +I+ E + C
Sbjct: 815 ---------GRKMAELPVDPMLSK--MILASE------------------------KYSC 839
Query: 704 SDEIASILSLLQVQD-IFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENK 762
S+EI ++ ++L V + IF +P + A R NF + GD L LLN++ + +
Sbjct: 840 SEEILTVAAMLSVNNSIFYRPKDKVVH--ADNARVNFFLPGGDHLVLLNVYTQWAESGYS 897
Query: 763 KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
Q+C++ F ++ ++RA +++ Q+ LL++ + L + + V K +T G+F + A L
Sbjct: 898 SQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARL 957
Query: 823 HYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
SG YRTV+ + ++IHP+S L+ QQP+
Sbjct: 958 TRSG-YRTVKQQQTVFIHPNSSLFE-QQPR 985
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Pan troglodytes (taxid: 9598) EC: 3EC: .EC: 6EC: .EC: 4EC: .EC: 1EC: 3 |
| >sp|O60231|DHX16_HUMAN Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Homo sapiens GN=DHX16 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 233 bits (595), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 158/510 (30%), Positives = 264/510 (51%), Gaps = 75/510 (14%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD 407
R +LK++++SAT+D F++ +A + + G +PV ++Y+ P +Y++ V
Sbjct: 543 RPELKVLVASATMDTARFSTFFD-----DAPVFRIPGRRFPVDIFYTKAPEADYLEACVV 597
Query: 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLKLLILPMHGSLPNNEQI 465
+ ++IH + P GDIL F+ G E+IE +L+ + + +LL+LP++ +LP++ Q
Sbjct: 598 SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA 657
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525
++F+PTP RK+V+ATNIAETS+TI GI+YV+DPGF K + +NP T SL V P SKA
Sbjct: 658 RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA 717
Query: 526 SAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIP--TIPNDPKDVKCDVMFHKVFF 583
SA QRAGRAGRV +G + RL+ + + T+P + +V+
Sbjct: 718 SANQRAGRAGRVAAGKCF-------RLYTAWAYQHELEETTVPEIQRTSLGNVVL----- 765
Query: 584 SFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED 643
LL++ +D +P LA E+L + +G + TT
Sbjct: 766 -----LLKSLGIHDLMHFDFLDPPPYETLLLA---LEQL-----YALGALNHLGELTTS- 811
Query: 644 VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFEC 703
G M E+ DP+L K +I+ E + C
Sbjct: 812 ---------GRKMAELPVDPMLSK--MILASE------------------------KYSC 836
Query: 704 SDEIASILSLLQVQD-IFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENK 762
S+EI ++ ++L V + IF +P + A R NF + GD L LLN++ + +
Sbjct: 837 SEEILTVAAMLSVNNSIFYRPKDKVVH--ADNARVNFFLPGGDHLVLLNVYTQWAESGYS 894
Query: 763 KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
Q+C++ F ++ ++RA +++ Q+ LL++ + L + + V K +T G+F + A L
Sbjct: 895 SQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARL 954
Query: 823 HYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
SG YRTV+ + ++IHP+S L+ QQP+
Sbjct: 955 TRSG-YRTVKQQQTVFIHPNSSLFE-QQPR 982
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Homo sapiens (taxid: 9606) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q17IN5|MED18_AEDAE Mediator of RNA polymerase II transcription subunit 18 OS=Aedes aegypti GN=MED18 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (592), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 121/209 (57%), Positives = 147/209 (70%), Gaps = 38/209 (18%)
Query: 139 LSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIR-GNQTQPLLLRVRRALDF 197
L GS+LDSA E LLHRLRGLCDNVD+GPE F D+EMC S++ N+ P++
Sbjct: 29 LLQGSILDSAAEHLLHRLRGLCDNVDTGPEAFADYEMCLSLKVPNEKTPVMT-------- 80
Query: 198 PDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDV 257
+RVR+A D D PYQLRYIGQPE+G D+ RPT+VRSS+D+
Sbjct: 81 -------------------VRVRKAQD-TDAPYQLRYIGQPELG--DRNRPTLVRSSLDI 118
Query: 258 ACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSY 317
AC+ VV+FLTEMG R+DFEYI++GYMFRKGRMK+ VSKIFK++ EPISQSY
Sbjct: 119 ACTPHVVDFLTEMGFRVDFEYITKGYMFRKGRMKVTVSKIFKVNSS-------EPISQSY 171
Query: 318 LVELSILAPGGQDVIGEDMKAFAEQLKPL 346
LVELS+LAP GQDVI +DM+ FAEQLKPL
Sbjct: 172 LVELSVLAPTGQDVIADDMRIFAEQLKPL 200
|
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Aedes aegypti (taxid: 7159) |
| >sp|Q767K6|DHX16_PIG Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Sus scrofa GN=DHX16 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 232 bits (591), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 157/510 (30%), Positives = 264/510 (51%), Gaps = 75/510 (14%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD 407
R +LK++++SAT+D F++ +A + + G +PV ++Y+ P +Y++ V
Sbjct: 547 RPELKVLVASATLDTARFSTFFD-----DAPVFRIPGRRFPVDIFYTKAPEADYLEACVV 601
Query: 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLKLLILPMHGSLPNNEQI 465
+ ++IH + P GDIL F+ G E+IE +L+ + + +LL+LP++ +LP++ Q
Sbjct: 602 SVLQIHVTQPPGDILVFLTGQEEIEAACEMLQDRCRRLGSKIRELLVLPIYANLPSDMQA 661
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525
++F+PTP RK+V+ATNIAETS+TI GI+YV+DPGF K + +NP T SL V P SKA
Sbjct: 662 RIFQPTPPGARKVVVATNIAETSLTIEGIIYVLDPGFCKQKSYNPRTGMESLTVTPCSKA 721
Query: 526 SAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIP--TIPNDPKDVKCDVMFHKVFF 583
SA QRAGRAGRV +G + RL+ + + T+P + +V+
Sbjct: 722 SANQRAGRAGRVAAGKCF-------RLYTAWAYQHELEETTVPEIQRTSLGNVVL----- 769
Query: 584 SFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED 643
LL++ +D +P LA E+L + +G + TT
Sbjct: 770 -----LLKSLGIHDLMHFDFLDPPPYETLLLA---LEQL-----YALGALNHLGELTTS- 815
Query: 644 VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFEC 703
G M E+ DP+L K +I+ E + C
Sbjct: 816 ---------GRKMAELPVDPMLSK--MILASE------------------------KYSC 840
Query: 704 SDEIASILSLLQVQD-IFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENK 762
S+EI ++ ++L V + IF +P + A R NF + GD L LLN++ + +
Sbjct: 841 SEEILTVAAMLSVNNSIFYRPKDKVVH--ADNARVNFFLPGGDHLVLLNVYTQWAESGYS 898
Query: 763 KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
Q+C++ F ++ ++RA +++ Q+ LL++ + L + + V K +T G+F + A L
Sbjct: 899 SQWCYENFVQFRSMRRARDVREQLEGLLERVEVGLSSCQGDYIRVRKAITAGYFYHTARL 958
Query: 823 HYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
SG YRTV+ + ++IHP+S L+ +QP+
Sbjct: 959 TRSG-YRTVKQQQTVFIHPNSSLFE-EQPR 986
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Sus scrofa (taxid: 9823) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P34498|MOG1_CAEEL Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 225 bits (574), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 150/506 (29%), Positives = 239/506 (47%), Gaps = 72/506 (14%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
KR LKLI++SAT+DA++ F+ N ++ G +PV ++++ PV +YV V
Sbjct: 583 KRADLKLIVTSATMDADKFADFFG----GNCPTFTIPGRTFPVELFHARTPVEDYVDAAV 638
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLK-LLILPMHGSLPNNEQI 465
A+ IH GDIL F+ G E IE ++K+ + ++ L +LP++ LP++ Q
Sbjct: 639 KQAVTIHLGGMDGDILIFMPGQEDIECTCEMIKEKLGELDEAPPLAVLPIYSQLPSDLQA 698
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525
K+F+ P MRK ++ATNIAETS+T+ GI++VIDPGF K + +NP ++L + P+S+A
Sbjct: 699 KIFQRAPGGMRKAIVATNIAETSLTVDGILFVIDPGFCKMKVYNPRIGMDALSIFPVSQA 758
Query: 526 SAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSF 585
SA QR GRAGR G YR R F + +P I
Sbjct: 759 SANQRTGRAGRTGPGQCYR--LYTERQFKDELLKSTVPEIQR------------------ 798
Query: 586 FQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED-- 643
T+LAN V L +LG F D +D
Sbjct: 799 --------------------------TNLANVVL--LLKSLGVDDLLKFHFMDAPPQDNM 830
Query: 644 -VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFE 702
+ + T G L P+ RK LD + + MG
Sbjct: 831 LNSMYQLWTLGALDNTGQLTPMGRKMVEFPLDPTLSKMLIMSAEMG-------------- 876
Query: 703 CSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENK 762
CSDE+ +I+S+L V IF +P A+ + F+V + D LT LN++ + +
Sbjct: 877 CSDEVLTIVSMLSVPAIFFRPKGREEEADAK--KEKFQVPESDHLTFLNVYIQWRTHKYS 934
Query: 763 KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
++C + + K LK+ E++ Q+ +++ +PL+++ + V KC+ + +F NAA L
Sbjct: 935 AKWCADNYLHVKALKKVREVRAQLKEIMQDLKLPLISNGSEWDIVRKCICSAYFHNAARL 994
Query: 823 HYSGVYRTVRGNEDLYIHPSSVLYTL 848
G Y VR ++HP+S L+ +
Sbjct: 995 KGIGEYVNVRTGIPCFLHPTSALFGM 1020
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Caenorhabditis elegans (taxid: 6239) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q54F05|DHX8_DICDI ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 223 bits (567), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 158/519 (30%), Positives = 254/519 (48%), Gaps = 100/519 (19%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+R +LK++I+SAT++AE+ +++ NA + + G +PV + Y+ DP +Y+ +
Sbjct: 650 RRPELKVLITSATLEAEKFSKYF-----MNAQLFIIPGRTFPVDIRYTKDPEADYLDASL 704
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGIL----KQYHNQREDLKLLILPMHGSLPNN 462
T ++IH S P GDIL F+ G E+I+ IL K + DL +ILP++ +LP+
Sbjct: 705 ITVMQIHLSEPPGDILLFLTGQEEIDAACQILYERMKSLGSNVPDL--IILPVYSALPSE 762
Query: 463 EQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPI 522
Q K+F P P RK+VIATNIAETS+TI GI YVIDPGF K + FNP +SLVV PI
Sbjct: 763 MQTKIFEPAPPGSRKVVIATNIAETSLTIDGIYYVIDPGFSKQKCFNPKNGMDSLVVAPI 822
Query: 523 SKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVF 582
S+A+A R RSG R T P KC ++ +
Sbjct: 823 SQAAA--------RQRSGRAGR-------------------TGPG-----KCYRLYTESA 850
Query: 583 FSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTV--------GYTI 634
F LA+ + E RT LG+TV +
Sbjct: 851 FKN--------------------------EMLASSIPEIQRTNLGNTVLTMKAMGINDLL 884
Query: 635 RFDDCTTEDVTKIKYMTE-----GILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGL 689
FD V + E G L E + L RK + LD + + + +G
Sbjct: 885 NFDFMDPPPVQTLVSAMEQLYSLGALDEEGLLTRLGRKMAEFPLDPQLSKMLIASVDLG- 943
Query: 690 LKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSG-ALSLKARVLRRNFEVEQGDLLT 748
CSDEI +++++L VQ++F +P AL+ + + F +GD LT
Sbjct: 944 -------------CSDEILTVVAMLSVQNVFYRPKEKQALADQKKA---KFFQPEGDHLT 987
Query: 749 LLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVL 808
LLN+++ ++ + +C + F + L+RA +++ Q+I ++ + + ++++ RN +
Sbjct: 988 LLNVYESWKNSKFSNPWCFENFVQARSLRRAQDVRKQLITIMDRYKLDIISAGRNYTKIQ 1047
Query: 809 KCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYT 847
K + +GFF+NA+ + Y+T+ + +YIHPSS L+
Sbjct: 1048 KAICSGFFANASKKDPNEGYKTLVEGQPVYIHPSSTLFN 1086
|
Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q7QGX9|MED18_ANOGA Mediator of RNA polymerase II transcription subunit 18 OS=Anopheles gambiae GN=MED18 PE=3 SV=3 | Back alignment and function description |
|---|
Score = 222 bits (566), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 118/211 (55%), Positives = 140/211 (66%), Gaps = 41/211 (19%)
Query: 138 LLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIR--GNQTQPLLLRVRRAL 195
L GS+LDSA E LLHRLRGLCDNVD+ PETF D EMCFS++ +T + +RVRRA
Sbjct: 25 FLLQGSILDSAAENLLHRLRGLCDNVDASPETFSDIEMCFSLKLPTEKTPVMTVRVRRAQ 84
Query: 196 DFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSI 255
D + P QLRYIGQPE+G D+ RPT+VRSS+
Sbjct: 85 DV-----------------------------EAPLQLRYIGQPELG--DRTRPTLVRSSL 113
Query: 256 DVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQ 315
D+AC+ V++FLTEMG R+DFEY ++GYMFRKGRMKI VSKI K + EPISQ
Sbjct: 114 DIACTPHVIDFLTEMGFRLDFEYSTKGYMFRKGRMKITVSKILK--------NMTEPISQ 165
Query: 316 SYLVELSILAPGGQDVIGEDMKAFAEQLKPL 346
SYLVELS+LAP GQD I EDM+ FAEQLKPL
Sbjct: 166 SYLVELSVLAPKGQDAIAEDMRIFAEQLKPL 196
|
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Anopheles gambiae (taxid: 7165) |
| >sp|Q54MH3|DHX16_DICDI Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 163/517 (31%), Positives = 256/517 (49%), Gaps = 99/517 (19%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD 407
R LKL+ISSAT+DAE +++ A ++ G Y V+ +Y+ P +Y+ V
Sbjct: 610 RPDLKLLISSATMDAERFSDYFD-----GAPTFNIPGRKYEVTTHYTQAPEADYLDAAVV 664
Query: 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLK---LLILPMHGSLPNNEQ 464
T ++IH + P+GDIL F+ G E+++ +L Q + K L+I ++ +LP + Q
Sbjct: 665 TVLQIHITEPLGDILVFLTGQEEVDQAAEML-QTRTRGLGTKIKELIITRIYSTLPTDLQ 723
Query: 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISK 524
K+F PTP RK+V+ATNIAETS+TI GI+YVIDPGF K + FNP T SLV+ P
Sbjct: 724 AKIFEPTPPNARKVVLATNIAETSLTIDGIIYVIDPGFCKQKMFNPRTGMESLVITP--- 780
Query: 525 ASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFS 584
V RA + R G R P KC F
Sbjct: 781 ---VSRA--SANQRKGRAGR-------------------VAPG-----KC--------FR 803
Query: 585 FFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDV 644
F W +D +L N + E RT LG+ V
Sbjct: 804 LF-----TAWAFDNEL-------------EENTIPEIQRTNLGNVVLL------------ 833
Query: 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVH------ERTIFTDILMGL--------L 690
+K M LM DP + + L++++ +R T + + L
Sbjct: 834 --LKSMGINDLMNFDFMDPPPAQTLIAALEQLYALGALNDRGQLTKLGRKMAEFPVDPQL 891
Query: 691 KKILKDKERDFECSDEIASILSLLQVQD-IFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749
K++ E+ ++CS+EI +I ++L V + IF +P + A R+ F QGD LTL
Sbjct: 892 SKMIIASEK-YKCSEEILTICAMLSVGNTIFYRPK--DKAFAADAARKLFFHPQGDHLTL 948
Query: 750 LNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLK 809
+N+F + + Q+C + F ++ +KRA ++++Q+ LLL++ IPLV++ +T+++ K
Sbjct: 949 MNVFNQWRESGYAVQWCFENFIQHRSMKRAQDVRDQLELLLERVEIPLVSNVDDTDSIRK 1008
Query: 810 CLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLY 846
C+ +GFF N+A L SG++RT + N+ + IHPSS L+
Sbjct: 1009 CIASGFFYNSAKLEKSGLFRTTKHNQSVQIHPSSCLF 1045
|
Probable ATP-binding RNA helicase involved in pre-mRNA splicing. Dictyostelium discoideum (taxid: 44689) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|P24384|PRP22_YEAST Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PRP22 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (562), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 158/513 (30%), Positives = 251/513 (48%), Gaps = 88/513 (17%)
Query: 346 LKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGV 405
+KR +LK+I++SAT+++ + +++ N I+++ G +PV V YS P ++Y++
Sbjct: 624 IKRPELKVIVTSATLNSAKFSEYF-----LNCPIINIPGKTFPVEVLYSQTPQMDYIEAA 678
Query: 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDL--KLLILPMHGSLPNNE 463
+D I IH + GDIL F+ G E+I+ IL D +LLILP++ +LP+
Sbjct: 679 LDCVIDIHINEGPGDILVFLTGQEEIDSCCEILYDRVKTLGDSIGELLILPVYSALPSEI 738
Query: 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPIS 523
Q K+F PTP+ RK+V ATNIAETSITI GI YV+DPGF K +N L+V PIS
Sbjct: 739 QSKIFEPTPKGSRKVVFATNIAETSITIDGIYYVVDPGFAKINIYNARAGIEQLIVSPIS 798
Query: 524 KASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFF 583
+A A Q R G R T P KC ++ +
Sbjct: 799 QAQANQ--------RKGRAGR-------------------TGPG-----KCYRLYTES-- 824
Query: 584 SFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED 643
+F+ +LE N V E R L HT+ + D
Sbjct: 825 AFYNEMLE------------------------NTVPEIQRQNLSHTI---LMLKAMGIND 857
Query: 644 VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEV-------HERTIFT---DILMGLLKKI 693
+ K +M + +M + L Y + LD+ E ++F + LL +
Sbjct: 858 LLKFDFMDPP--PKNLMLNALTELYHLQSLDDEGKLTNLGKEMSLFPMDPTLSRSLLSSV 915
Query: 694 LKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIF 753
D +CSDEI +I+S+L VQ++F +P L ++ + F GD LTLLN++
Sbjct: 916 ------DNQCSDEIVTIISMLSVQNVFYRPKDRQLEADSK--KAKFHHPYGDHLTLLNVY 967
Query: 754 KFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTN 813
+++ +Q+C F +++ LKRA ++K+Q+ ++ KK + L++ + + + K +
Sbjct: 968 TRWQQANYSEQYCKTNFLHFRHLKRARDVKSQISMIFKKIGLKLISCHSDPDLIRKTFVS 1027
Query: 814 GFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLY 846
GFF NAA Y+T+ G ++ IHPSS LY
Sbjct: 1028 GFFMNAAKRDSQVGYKTINGGTEVGIHPSSSLY 1060
|
Acts late in the splicing of pre-mRNA. Mediates the release of the spliced mRNA from spliceosomes. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 3 EC: . EC: 6 EC: . EC: 4 EC: . EC: 1 EC: 3 |
| >sp|Q9XZT1|MED18_DROME Mediator of RNA polymerase II transcription subunit 18 OS=Drosophila melanogaster GN=MED18 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 220 bits (560), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 115/209 (55%), Positives = 143/209 (68%), Gaps = 33/209 (15%)
Query: 139 LSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFP 198
L GS+LDSAVE L+HRL+GLCDNVD+ PE FHD E+C S+R
Sbjct: 26 LLQGSILDSAVEHLMHRLKGLCDNVDTSPEPFHDLEVCMSLR------------------ 67
Query: 199 DMPYQLRYIGQPEMG-PLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDV 257
QP PLLLRVRRAL D P+Q+RY+G PE+ D RPT+VRS +D
Sbjct: 68 ----------QPNANQPLLLRVRRALGR-DAPFQMRYLGNPEV---DLRRPTLVRSCMDC 113
Query: 258 ACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSY 317
AC+ ++EFLTEMG R++FEYI++GYMFRKGRMKI VSK+ K+ GK D EPISQSY
Sbjct: 114 ACTNGILEFLTEMGFRLEFEYIAKGYMFRKGRMKITVSKLIKIVPGKQQDMANEPISQSY 173
Query: 318 LVELSILAPGGQDVIGEDMKAFAEQLKPL 346
+VELS++AP GQ+ +GE+M+ FAEQLKPL
Sbjct: 174 IVELSVVAPTGQENVGEEMRVFAEQLKPL 202
|
Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| 156544684 | 685 | PREDICTED: probable ATP-dependent RNA he | 0.519 | 0.651 | 0.457 | 1e-108 | |
| 332016639 | 880 | Putative ATP-dependent RNA helicase DHX3 | 0.519 | 0.506 | 0.456 | 1e-107 | |
| 328778106 | 684 | PREDICTED: probable ATP-dependent RNA he | 0.519 | 0.652 | 0.438 | 1e-106 | |
| 307183447 | 671 | Probable ATP-dependent RNA helicase DHX3 | 0.519 | 0.664 | 0.444 | 1e-106 | |
| 383861670 | 684 | PREDICTED: probable ATP-dependent RNA he | 0.519 | 0.652 | 0.436 | 1e-106 | |
| 380027981 | 1036 | PREDICTED: LOW QUALITY PROTEIN: probable | 0.519 | 0.430 | 0.442 | 1e-105 | |
| 307203317 | 1101 | Probable ATP-dependent RNA helicase DHX3 | 0.515 | 0.401 | 0.441 | 1e-105 | |
| 350413783 | 1032 | PREDICTED: probable ATP-dependent RNA he | 0.519 | 0.432 | 0.442 | 1e-105 | |
| 340710307 | 1032 | PREDICTED: probable ATP-dependent RNA he | 0.519 | 0.432 | 0.442 | 1e-104 | |
| 270003083 | 682 | hypothetical protein TcasGA2_TC000112 [T | 0.520 | 0.655 | 0.410 | 1e-101 |
| >gi|156544684|ref|XP_001605302.1| PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 400 bits (1029), Expect = e-108, Method: Compositional matrix adjust.
Identities = 235/514 (45%), Positives = 312/514 (60%), Gaps = 68/514 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-SASSN-----ATILSVKGHLYPVSVYYSNDPVVN 400
KR L+LI+SSATVDAEE+ F+N SAS N ATILSV+G LYP+ +YYS +PV +
Sbjct: 190 KRKSLRLIVSSATVDAEELRDFFNTNSASQNRDEDTATILSVEGRLYPIDIYYSAEPVAD 249
Query: 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGS 458
YVQ VV+TA+KI++S GDILAF+ G+E+++ + +L ++ + +KL+ LPM+GS
Sbjct: 250 YVQAVVETALKINDSEAPGDILAFLTGMEEVDRAVSLLNEHAKVVKEGKMKLMPLPMYGS 309
Query: 459 LPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLV 518
LPNNEQ+KVF TP RKIV+ATNIAETSITIP +VYVID GFVK WF+ T TNSL+
Sbjct: 310 LPNNEQLKVFWRTPNDSRKIVVATNIAETSITIPNVVYVIDCGFVKLPWFDIETHTNSLI 369
Query: 519 VVPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMF 578
V P+SKASA QRAGRAGRVRSG Y RL+ + I + P P+ + D+
Sbjct: 370 VAPVSKASADQRAGRAGRVRSGKAY-------RLYTEEAYNDLIASTP--PEMQRADL-- 418
Query: 579 HKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDD 638
A K +GI R + S S L + +G I D
Sbjct: 419 -------------APAVLQLKALGIDNVVRFNFPSSPPSKSLLSAVELLYALG-AIDNDG 464
Query: 639 CTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698
T+ V G+ M E+ DP +F L+
Sbjct: 465 ELTDPV--------GMTMAEIPLDP-----------------VFAKCLIA---------S 490
Query: 699 RDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEK 758
+ CS+EI +IL++LQVQ++F++P+SG ++KARV R FEVE+GDL+TLLN++ YEK
Sbjct: 491 GEMGCSNEITTILAMLQVQNVFVRPNSGQAAIKARVAHRMFEVEEGDLMTLLNVYTAYEK 550
Query: 759 QENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818
+ +C KYF N K +KRA E++ QM L+KK IPL + N +LKC+T G F
Sbjct: 551 YKT-NSWCQKYFINSKAIKRATEIRTQMRKLIKKLKIPLSSCLGNVELLLKCITAGLFPY 609
Query: 819 AAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AAYLHYSGVY+TVRG +DL+IHP+S LYTL+QPQ
Sbjct: 610 AAYLHYSGVYKTVRGGKDLHIHPNSCLYTLEQPQ 643
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332016639|gb|EGI57507.1| Putative ATP-dependent RNA helicase DHX35 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 397 bits (1019), Expect = e-107, Method: Compositional matrix adjust.
Identities = 234/513 (45%), Positives = 312/513 (60%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-----SASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR L++I+SSATVDAEE+ F+N+ S ++A I+SV+G LYPV V++ +P+ NY
Sbjct: 386 KRKSLRIIVSSATVDAEELRDFFNVNTMKDSNKNSAVIMSVEGRLYPVDVFFLKEPMANY 445
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRED--LKLLILPMHGSL 459
+ GVVDTA+KIH++ GDILAF+ GL++++ + +L ++ +D KLL LPM+GSL
Sbjct: 446 INGVVDTALKIHDTEESGDILAFLTGLDEVDQAVSLLSEHAKLIKDDKQKLLPLPMYGSL 505
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN EQ+KVF + RK+++ATNIAETSITIP IVYVID GFVK WF T TNSLV+
Sbjct: 506 PNAEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKIPWFEAETQTNSLVI 565
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VPISKASA QRAGRAGRVR+G V+ RL+ + P P+ + D+
Sbjct: 566 VPISKASANQRAGRAGRVRTGKVF-------RLYTKEAYTELFEATP--PEMQRSDL--- 613
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + YT+ D
Sbjct: 614 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLVT--GLELLYTLGAID- 656
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ D+T M G+ M EM +P+L K ++ T MG
Sbjct: 657 SNGDLT----MPLGLTMAEMPLEPVLAK------------SLITSGEMG----------- 689
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+EI +I ++LQVQ++FI+P G LKAR+ R FEVE+GDLLTLLN++ +E Q
Sbjct: 690 ---CSEEITTIFAMLQVQNVFIQPGGGQAVLKARIAHRKFEVEEGDLLTLLNVYTAFE-Q 745
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+C KYF N+KVL+RA E++ QM +LK IPLV+ N +LKCLT G F A
Sbjct: 746 NKTPAWCQKYFLNHKVLRRATEIRVQMHKMLKHLDIPLVSCNGNIQQILKCLTAGLFPKA 805
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+G YRTVRGN+DLYIHP+S LYTL+QPQ
Sbjct: 806 AYLHYTGTYRTVRGNKDLYIHPNSCLYTLKQPQ 838
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328778106|ref|XP_396598.4| PREDICTED: probable ATP-dependent RNA helicase DHX35 isoform 1 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1008), Expect = e-106, Method: Compositional matrix adjust.
Identities = 225/513 (43%), Positives = 314/513 (61%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNAT-----ILSVKGHLYPVSVYYSNDPVVNY 401
KR L++++ SATVDAE++ F+N + + ++T IL+++G LYPV +++ +PV NY
Sbjct: 190 KRRSLRIVVCSATVDAEQLRDFFNTNTTKDSTKDTAVILTIEGRLYPVDIFFIKEPVANY 249
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGSL 459
V V+DT +KIHE+ GDILAF+ GL++++ + +L ++ + LKLL L M+GSL
Sbjct: 250 VTSVIDTVMKIHENEEPGDILAFLTGLDEVDRAVSLLLEHAKLIKEGKLKLLPLAMYGSL 309
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN+EQ+KVF + RK++IATNIAETSITIP I+YVID GFVK W+ T TNSL++
Sbjct: 310 PNSEQLKVFWRAAKDTRKVIIATNIAETSITIPNIIYVIDCGFVKIPWYETETQTNSLII 369
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VPISKASA QRAGRAGR+R+G YR L+ S T P P+ + D+
Sbjct: 370 VPISKASADQRAGRAGRIRTGKAYR-------LYTEKAYSELFETTP--PEMQRSDL--- 417
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + Y + D
Sbjct: 418 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLLT--GLELLYALGAIDS 461
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
E T + GI M EM +P+L K S+I+ E MG
Sbjct: 462 NGELTTPL-----GITMAEMPLEPVLAK-SLIVSGE-----------MG----------- 493
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+EI++IL++LQVQ++FI+P+ G ++KAR+ +R FEVE+GDLLTLLN++ YEK
Sbjct: 494 ---CSEEISTILAMLQVQNVFIRPAGGQAAIKARIAQRKFEVEEGDLLTLLNVYIAYEKN 550
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+ +C K F N K L+RA E++ QM ++KK +IPLV+ RN +LKC+T G FS
Sbjct: 551 KTS-SWCQKQFLNNKALRRAMEIRTQMHSMMKKLNIPLVSCNRNVQQILKCITAGLFSKV 609
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+G Y+T+RGN+DLYIHP+S LYTLQQPQ
Sbjct: 610 AYLHYTGTYKTIRGNKDLYIHPNSCLYTLQQPQ 642
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307183447|gb|EFN70269.1| Probable ATP-dependent RNA helicase DHX35 [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 228/513 (44%), Positives = 302/513 (58%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-----SASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR LK+I+SSATVDAEE+ F+N+ S+ +A I+SV+G LYPV V++ +PV NY
Sbjct: 177 KRKSLKIIVSSATVDAEELRDFFNVNTTKDSSKDSAIIMSVEGRLYPVDVFFLKEPVANY 236
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRED--LKLLILPMHGSL 459
V GVVDT +KIHE+ GDILAF+ GL++++ + +L ++ +D KLL LPM+GSL
Sbjct: 237 VNGVVDTVLKIHETEESGDILAFLTGLDEVDQAVSLLSEHAKLIKDGKQKLLPLPMYGSL 296
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN EQ+KVF + RK+++ATNIAETSITIP IVYVID GFVK WF T TNSLV+
Sbjct: 297 PNAEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKIPWFEVETQTNSLVI 356
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VP+SKASA QRAGRAGR+R+G + RL+ + P P+ + D+
Sbjct: 357 VPVSKASADQRAGRAGRIRTGKAF-------RLYTEEAYAELFEATP--PEMQRSDL--- 404
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S + L + +G D
Sbjct: 405 ------------APAILQLKALGIDNVLRFNFPSAPPSKNLVTGLELLYALGAIDNNGDL 452
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
T + G+ M EM +P+L K ++ T MG
Sbjct: 453 T---------IPLGLTMAEMPLEPVLAK------------SLITSGEMG----------- 480
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS EI +IL++LQVQ+IFI+P G +LKAR+ R FEVE+GDLLTLLN++ YE Q
Sbjct: 481 ---CSVEITTILAMLQVQNIFIQPGGGQAALKARIAHRKFEVEEGDLLTLLNVYTAYE-Q 536
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+C K+F N+K L+RA E++ QM +LK+ I + N +LKCLT G F A
Sbjct: 537 NKTPAWCQKHFLNHKALRRATEIRTQMHKMLKRLDISSTSCNGNIQQILKCLTAGLFPKA 596
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+GVYRTVRGN+DLYIHP+S LYTLQQPQ
Sbjct: 597 AYLHYTGVYRTVRGNKDLYIHPNSCLYTLQQPQ 629
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383861670|ref|XP_003706308.1| PREDICTED: probable ATP-dependent RNA helicase DHX35 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 224/513 (43%), Positives = 311/513 (60%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNAT-----ILSVKGHLYPVSVYYSNDPVVNY 401
KR +L++++ SATVDAE++ F+N + + ++T IL+V+G LYPV ++Y +PV NY
Sbjct: 190 KRKRLRIVVCSATVDAEQLRDFFNTNTTKDSTKDTAVILTVEGRLYPVDIFYVKEPVANY 249
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGSL 459
V VVDTA+KIHE+ GDILAF+ GL++++ + +L ++ + KLL L M+GSL
Sbjct: 250 VTSVVDTALKIHETEESGDILAFLTGLDEVDQAVSLLSEHAKLIKEGKQKLLPLAMYGSL 309
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN+EQ+KVF + RK+++ATNIAETSITIP IVYVID GFVK W+ T TNSLV+
Sbjct: 310 PNSEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKIPWYEVETQTNSLVI 369
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VP+SKASA QRAGRAGRVR+G Y RL+ S P P+ + D+
Sbjct: 370 VPVSKASADQRAGRAGRVRTGKAY-------RLYTEQAYSELFEATP--PEMQRSDL--- 417
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + Y + D
Sbjct: 418 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLLT--GLELLYALGAIDS 461
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
E + G+ M EM +P+L K S+I+ E+
Sbjct: 462 NGELTAPL-----GLTMAEMPLEPVLAK-SLIVSGEM----------------------- 492
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
ECS+E+++IL++LQVQ+IFI+P+ G ++KAR+ R FEVE+GDLLTLLN++ YEK
Sbjct: 493 --ECSEELSTILAMLQVQNIFIRPAGGQAAIKARIAHRKFEVEEGDLLTLLNVYTAYEKN 550
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+ +C K F N K L+RA E++ QM ++++ IPL++ N +LKCLT G F A
Sbjct: 551 KT-PSWCQKQFLNNKALRRATEIRTQMHHMMRRLDIPLISCNGNVQQILKCLTAGLFPKA 609
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+GVY+TVRGN+DLYIHP+S LYTLQQPQ
Sbjct: 610 AYLHYTGVYKTVRGNKDLYIHPNSCLYTLQQPQ 642
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380027981|ref|XP_003697690.1| PREDICTED: LOW QUALITY PROTEIN: probable ATP-dependent RNA helicase DHX35-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/513 (44%), Positives = 310/513 (60%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-----SASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR L++++ SATVDAE++ F+N S A IL+++G LYPV +++ +PV NY
Sbjct: 542 KRRSLRIVVCSATVDAEQLRDFFNTNTIKDSTKDTAVILTIEGRLYPVDIFFIKEPVANY 601
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGSL 459
V V+DT +KIHE+ GDILAF+ GL++++ + +L ++ + LKLL L M+GSL
Sbjct: 602 VTSVIDTVMKIHENEEPGDILAFLTGLDEVDRAVSLLSEHAKLIKEGKLKLLPLAMYGSL 661
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN+EQ+KVF + RK++IATNIAETSITIP I+YVID GFVK W+ T TNSLV+
Sbjct: 662 PNSEQLKVFWRAAKDTRKVIIATNIAETSITIPNIIYVIDCGFVKIPWYETETQTNSLVI 721
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VPISKASA QRAGRAGRVR+G YR L+ S T P P+ + D+
Sbjct: 722 VPISKASADQRAGRAGRVRTGKAYR-------LYTEKAYSELFETTP--PEMQRSDL--- 769
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + Y + D
Sbjct: 770 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLLT--GLELLYALGAIDS 813
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
E T + GI M EM +P+L K S+I+ E MG
Sbjct: 814 NGELTTPL-----GITMAEMPLEPVLAK-SLIVSGE-----------MG----------- 845
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+EI++IL++LQVQ++FI+P+ G ++KAR+ +R FEVE+GDLLTLLN++ YEK
Sbjct: 846 ---CSEEISTILAMLQVQNVFIRPTGGQAAIKARIAQRKFEVEEGDLLTLLNVYIAYEKN 902
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+ +C K F N K L+RA E++ QM ++KK +IPLV+ RN +LKC+T G F
Sbjct: 903 KTG-SWCQKQFLNNKALRRAMEIRTQMHSMMKKLNIPLVSCNRNVQQILKCITAGLFPKV 961
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+G Y+T+RGN+DLYIHP+S LYTLQQPQ
Sbjct: 962 AYLHYTGTYKTIRGNKDLYIHPNSCLYTLQQPQ 994
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307203317|gb|EFN82452.1| Probable ATP-dependent RNA helicase DHX35 [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 228/517 (44%), Positives = 307/517 (59%), Gaps = 75/517 (14%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L++I+SSATVDAEE+ F+N++ + + A I+SV+G LYPV +++ +P+ NY
Sbjct: 607 KRKSLRIIVSSATVDAEELRDFFNVNTTKDPDKDSAVIMSVEGRLYPVEIFFLKEPIANY 666
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRED--LKLLILPMHGSL 459
V GVVDT +KIHE+ GD+LAF+ GL++++ + +L ++ +D KLL LPM+GSL
Sbjct: 667 VNGVVDTVLKIHETEKPGDVLAFLTGLDEVDRAVSLLSEHAELIKDGKPKLLPLPMYGSL 726
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN EQ+KVF + RKI++ATNIAETSITIP IVYVID GFVK WF T TNSLV+
Sbjct: 727 PNTEQLKVFWRAAKDSRKIIVATNIAETSITIPNIVYVIDCGFVKLPWFEAETQTNSLVI 786
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VP+S+ASA QRAGRAGRV +G Y RL+ + P P+ + D+
Sbjct: 787 VPVSRASADQRAGRAGRVCTGKAY-------RLYTEEAYAGFFEATP--PEMQRSDL--- 834
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL---ANRVSE-ELRTTLGHTVGYTIR 635
A K +GI R + S N V+ EL LG G
Sbjct: 835 ------------APAILQLKALGIDNVLRFNFPSAPPSKNLVTGLELLYALGAIDG---- 878
Query: 636 FDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
D+T M G+ M E+ +P+L K S+I+ E+
Sbjct: 879 -----NGDLT----MPLGLTMAEIPLEPVLAK-SLIVSGEM------------------- 909
Query: 696 DKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKF 755
ECS+EI +I +LLQVQ++F++P G +LKAR+ R FEVE+GDLLTLLN++
Sbjct: 910 ------ECSEEITTIFALLQVQNVFVQPGGGQAALKARIAHRKFEVEEGDLLTLLNVYTA 963
Query: 756 YEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGF 815
++ Q +C K+F NYK L R E++ QM +LK+ IPL++ N +LKCLT G
Sbjct: 964 FQ-QNKTSAWCQKHFLNYKALCRTTEIRTQMHKMLKRLDIPLISCDGNIQQILKCLTAGL 1022
Query: 816 FSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
F AAYLHYSGVYRTVRGN DL+IHP+S LYTLQQPQ
Sbjct: 1023 FPKAAYLHYSGVYRTVRGNTDLFIHPNSCLYTLQQPQ 1059
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350413783|ref|XP_003490110.1| PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 227/513 (44%), Positives = 308/513 (60%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-----SASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR L++++ SATVDAE++ F+N SA A IL+V+G LYPV V+Y +PV NY
Sbjct: 538 KRKSLRIVVCSATVDAEQLRDFFNTNTTKDSAKDTAVILTVEGRLYPVDVFYIIEPVANY 597
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGSL 459
V V+DTA+KIHE+ GDILAF+ GL++++ + +L ++ + KLL L M+GSL
Sbjct: 598 VTSVIDTALKIHENEEPGDILAFLTGLDEVDQAVSLLSEHAKLIKEGKQKLLPLAMYGSL 657
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN+EQ+KVF + RK+++ATNIAETSITIP IVYVID GFVK W+ T TNSLV+
Sbjct: 658 PNSEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKVPWYEAETQTNSLVI 717
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VP+SKASA QRAGRAGRVR+G Y RL+ S P P+ + D+
Sbjct: 718 VPVSKASANQRAGRAGRVRTGKAY-------RLYTKEAYSELFEATP--PEMQRSDL--- 765
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + Y + D
Sbjct: 766 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLLT--GLELLYALGAIDS 809
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
E T + G+ M EM +P+L K S+I+ E MG
Sbjct: 810 NGELTTPL-----GVTMAEMPLEPVLAK-SLIVSGE-----------MG----------- 841
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+E+++IL++LQVQ++F++P+ G ++KAR+ R FEVE+GDLLTLLN++ YEK
Sbjct: 842 ---CSEELSTILAMLQVQNVFVRPAGGQAAIKARIAHRKFEVEEGDLLTLLNVYTAYEKN 898
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+C K F N K L+R E++ QM ++KK IPLV++ N +LKC+T G F A
Sbjct: 899 RT-LSWCQKQFLNNKALRRVTEIRTQMHSMMKKLDIPLVSANGNLQQILKCITAGLFPKA 957
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+GVY+TVRGN+DLYIHP+S LYTLQQPQ
Sbjct: 958 AYLHYTGVYKTVRGNKDLYIHPNSCLYTLQQPQ 990
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340710307|ref|XP_003393734.1| PREDICTED: probable ATP-dependent RNA helicase DHX35-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 387 bits (994), Expect = e-104, Method: Compositional matrix adjust.
Identities = 227/513 (44%), Positives = 308/513 (60%), Gaps = 67/513 (13%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNI-----SASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR L++++ SATVDAE++ F+N SA A IL+V+G LYPV ++Y +PV NY
Sbjct: 538 KRKSLRIVVCSATVDAEQLRDFFNTNTTKDSAKDTAIILTVEGRLYPVDIFYIIEPVANY 597
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLKLLILPMHGSL 459
V V+DTA+KIHE+ GDILAF+ GL++++ + +L ++ + KLL L M+GSL
Sbjct: 598 VTSVIDTALKIHENEEPGDILAFLTGLDEVDQAVSLLSEHAKLIKEGKQKLLPLAMYGSL 657
Query: 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVV 519
PN+EQ+KVF + RK+++ATNIAETSITIP IVYVID GFVK W+ T TNSLV+
Sbjct: 658 PNSEQLKVFWRAAKDTRKVIVATNIAETSITIPNIVYVIDCGFVKIPWYEAETQTNSLVI 717
Query: 520 VPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFH 579
VP+SKASA QRAGRAGRVR+G Y RL+ S P P+ + D+
Sbjct: 718 VPVSKASANQRAGRAGRVRTGKAY-------RLYTKEAYSELFEATP--PEMQRSDL--- 765
Query: 580 KVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDC 639
A K +GI R + S S+ L T G + Y + D
Sbjct: 766 ------------APAILQLKALGIDNVLRFNFPSAPP--SKNLLT--GLELLYALGAIDS 809
Query: 640 TTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
E T + G+ M EM +P+L K S+I+ E MG
Sbjct: 810 NGELTTPL-----GVTMAEMPLEPVLAK-SLIVSGE-----------MG----------- 841
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+E+++IL++LQVQ++FI+P+ G ++KAR+ R FEVE+GDLLTLLN++ YEK
Sbjct: 842 ---CSEELSTILAMLQVQNVFIRPAGGQAAIKARIAHRKFEVEEGDLLTLLNVYTAYEKN 898
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+C K F N K L+R E++ QM ++KK IPLV++ N +LKC+T G F A
Sbjct: 899 RT-LSWCQKQFLNNKALRRVTEIRTQMHSMMKKLDIPLVSANGNLQQILKCITAGLFPKA 957
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
AYLHY+GVY+TVRGN+DLYIHP+S LYTLQQPQ
Sbjct: 958 AYLHYTGVYKTVRGNKDLYIHPNSCLYTLQQPQ 990
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270003083|gb|EEZ99530.1| hypothetical protein TcasGA2_TC000112 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/512 (41%), Positives = 306/512 (59%), Gaps = 65/512 (12%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNIS--ASSNATILSVKGHLYPVSVYYSNDPVVNYVQG 404
KR +L+LI++SAT+DA+E+ +F+N +A I++VKG +PV+++Y+ +PV YVQ
Sbjct: 188 KRPELRLIVASATMDAKELFEFFNNKDRNKDSAVIMTVKGRQFPVNIFYTKEPVPCYVQK 247
Query: 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLK----LLILPMHGSLP 460
VDT +KI+ S GDIL F+ G E+++ + +LK++ N E K + +LPM+GSLP
Sbjct: 248 SVDTVLKINASKESGDILVFLTGQEEVDRAVRLLKEHANNIEQAKKKELMFVLPMYGSLP 307
Query: 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVV 520
+EQ+KVF+ P RK+V+ATN+AETS+TIPGIV+VID GFVK RWFN T T+SL+ V
Sbjct: 308 YHEQLKVFKSAPDGYRKVVVATNVAETSVTIPGIVHVIDCGFVKMRWFNTETHTDSLITV 367
Query: 521 PISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHK 580
P+S+ASA QRAGRAGRV+ GHVY RL+ S+ P +++ K
Sbjct: 368 PVSRASADQRAGRAGRVKPGHVY-------RLYTEEAASKLADNTPP-------EIIRTK 413
Query: 581 VFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCT 640
+ ++ Q K +GI+ + S + L++ L + Y + D
Sbjct: 414 LTYAVLQL----------KALGISNILKFKFPSPPP--VQNLKSAL--EILYALGAIDIN 459
Query: 641 TEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERD 700
E + G M E DPL YS ++L D
Sbjct: 460 GELTKPL-----GFHMAEFALDPL---YSKVLLS-----------------------SGD 488
Query: 701 FECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQE 760
F CS+E+ +I+S+LQV+ +F KPSSG S+KAR+ +R FEVE+GDL+T LN++ + E
Sbjct: 489 FGCSEEVLTIISMLQVETVFTKPSSGNFSIKARIQKRLFEVEEGDLITYLNVYNAFVSSE 548
Query: 761 NKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAA 820
++FCHK F NYK +KR E++N++ +L +P+V+ T + KCL G F NAA
Sbjct: 549 MSREFCHKNFINYKSMKRVVEVRNRLEKMLVNYDVPIVSCQGVTEIICKCLITGLFPNAA 608
Query: 821 YLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQ 852
YLHYSGVY+TVRG+ +L++HP SVLYT+ QPQ
Sbjct: 609 YLHYSGVYKTVRGDIELFVHPDSVLYTIPQPQ 640
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 858 | ||||||
| FB|FBgn0031631 | 678 | CG3225 [Drosophila melanogaste | 0.230 | 0.292 | 0.457 | 4.6e-82 | |
| UNIPROTKB|D3ZZG1 | 703 | Dhx35 "Protein Dhx35" [Rattus | 0.207 | 0.253 | 0.454 | 1.2e-74 | |
| UNIPROTKB|F1SDW0 | 719 | DHX35 "Uncharacterized protein | 0.230 | 0.275 | 0.425 | 1.6e-74 | |
| ZFIN|ZDB-GENE-070410-11 | 691 | zgc:158828 "zgc:158828" [Danio | 0.207 | 0.257 | 0.459 | 1.6e-74 | |
| UNIPROTKB|E1BDN4 | 703 | DHX35 "Uncharacterized protein | 0.207 | 0.253 | 0.465 | 6.1e-74 | |
| UNIPROTKB|F5GXM6 | 672 | DHX35 "Probable ATP-dependent | 0.207 | 0.264 | 0.449 | 1.1e-73 | |
| UNIPROTKB|Q9H5Z1 | 703 | DHX35 "Probable ATP-dependent | 0.207 | 0.253 | 0.449 | 2.2e-73 | |
| UNIPROTKB|E1C4U5 | 705 | DHX35 "Uncharacterized protein | 0.207 | 0.252 | 0.449 | 3.4e-71 | |
| RGD|1311165 | 679 | Dhx35 "DEAH (Asp-Glu-Ala-His) | 0.207 | 0.262 | 0.454 | 2.2e-68 | |
| UNIPROTKB|E2RQN7 | 702 | DHX35 "Uncharacterized protein | 0.230 | 0.282 | 0.420 | 6e-68 |
| FB|FBgn0031631 CG3225 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 473 (171.6 bits), Expect = 4.6e-82, Sum P(3) = 4.6e-82
Identities = 91/199 (45%), Positives = 132/199 (66%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATI-LSVKGHLYPVSVYYSNDPVVNYVQGV 405
KR+ LKLIISSAT+DA +F++ S ++ LS++G ++PVS +Y N+P +YV+
Sbjct: 189 KRSSLKLIISSATIDASFFSEFFSWPGSGEVSVKLSIEGRMHPVSNFYLNEPCADYVKET 248
Query: 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465
V+T K+H+ P GDILAF+ G E++ + +L++Y E L +LPM+GS+ + +Q+
Sbjct: 249 VETVWKLHQKEPPGDILAFLTGQEEVLEALDLLREYIASSEQENLKVLPMYGSMSSTDQL 308
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKX 525
VF P+ RK+V+ATNIAETSITIPGIVYVID G+VK +W+NP T ++SLV+VP+SK
Sbjct: 309 SVFFTPPKGTRKVVLATNIAETSITIPGIVYVIDCGYVKVKWYNPKTCSDSLVIVPVSKA 368
Query: 526 XXXXXXXXXXXXXXXHVYR 544
VYR
Sbjct: 369 SAIQRAGRAGRMRPGKVYR 387
|
|
| UNIPROTKB|D3ZZG1 Dhx35 "Protein Dhx35" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 1.2e-74, Sum P(3) = 1.2e-74
Identities = 85/187 (45%), Positives = 127/187 (67%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DAE+ F+N + +S+ IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDAEKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ VDT +KIH++ GDILAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 258 IKATVDTVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKKHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF ++RK+++ATN+AETSITI GIVYVID GF+K R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSHSVRKVIVATNVAETSITISGIVYVIDCGFMKLRAYNPRTAIECL 377
Query: 518 VVVPISK 524
VVVP+S+
Sbjct: 378 VVVPVSQ 384
|
|
| UNIPROTKB|F1SDW0 DHX35 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 88/207 (42%), Positives = 130/207 (62%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DAE+ F+N + +S+ IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDAEKFRDFFNQNDTSDPPRDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ V+T +KIH++ GDILAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 258 IKSTVETVMKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALGRTGMKRHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF R++RK+++ATN+AETSITI GIVYVID GFVK R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECL 377
Query: 518 VVVPISKXXXXXXXXXXXXXXXXHVYR 544
VVVP+S+ YR
Sbjct: 378 VVVPVSQASANQRAGRAGRSRSGKCYR 404
|
|
| ZFIN|ZDB-GENE-070410-11 zgc:158828 "zgc:158828" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 1.6e-74, Sum P(3) = 1.6e-74
Identities = 86/187 (45%), Positives = 129/187 (68%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNAT-----ILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DA++ F+N++ S +A+ IL+V+G +PV ++Y+ PV +Y
Sbjct: 188 KRRDLRLIVASATLDAKKFQDFFNLNESGDASKDTCGILTVEGRTFPVDIFYTVSPVPDY 247
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLK--LLILPMHG 457
V+ V+T +KIHE+ GD+LAF+ G E++E ++ +L++ R +K L +LPM+
Sbjct: 248 VKATVETVLKIHETEDDGDVLAFLTGQEEVEKVVSLLQEQARTLSRYGMKKHLCVLPMYA 307
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP NEQ++VF +RK+V+ATNIAETSITI G+V+VID FVK R +NP T SL
Sbjct: 308 GLPYNEQMRVFERMAPTVRKVVVATNIAETSITINGVVFVIDCAFVKIRAYNPRTAIESL 367
Query: 518 VVVPISK 524
+V PISK
Sbjct: 368 IVTPISK 374
|
|
| UNIPROTKB|E1BDN4 DHX35 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 6.1e-74, Sum P(3) = 6.1e-74
Identities = 87/187 (46%), Positives = 129/187 (68%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNAT-----ILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DAE+ F+N + +S+ T IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDAEKFRDFFNHNDTSDPTRDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ V+T +KIH++ GDILAF+ G E++E ++ +L + + +K L ILPM+
Sbjct: 258 IKSTVETVMKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALGQTGMKRHLRILPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF R++RK+++ATN+AETSITI GIVYVID GFVK R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECL 377
Query: 518 VVVPISK 524
VVVP+S+
Sbjct: 378 VVVPVSQ 384
|
|
| UNIPROTKB|F5GXM6 DHX35 "Probable ATP-dependent RNA helicase DHX35" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 1.1e-73, Sum P(3) = 1.1e-73
Identities = 84/187 (44%), Positives = 128/187 (68%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DA++ F+N + +S+ IL+V+G +PV ++Y PV +Y
Sbjct: 167 KRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDY 226
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ V+T +KIH++ GD+LAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 227 IKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYA 286
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF R++RK+++ATN+AETSITI GIVYVID GFVK R +NP T L
Sbjct: 287 GLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECL 346
Query: 518 VVVPISK 524
VVVP+S+
Sbjct: 347 VVVPVSQ 353
|
|
| UNIPROTKB|Q9H5Z1 DHX35 "Probable ATP-dependent RNA helicase DHX35" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.2e-73, Sum P(3) = 2.2e-73
Identities = 84/187 (44%), Positives = 128/187 (68%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DA++ F+N + +S+ IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDADKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ V+T +KIH++ GD+LAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 258 IKSTVETVVKIHQTEGDGDVLAFLTGQEEVETVVSMLIEQARALARTGMKRHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF R++RK+++ATN+AETSITI GIVYVID GFVK R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTAIECL 377
Query: 518 VVVPISK 524
VVVP+S+
Sbjct: 378 VVVPVSQ 384
|
|
| UNIPROTKB|E1C4U5 DHX35 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 3.4e-71, Sum P(3) = 3.4e-71
Identities = 84/187 (44%), Positives = 126/187 (67%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNIS-----ASSNATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DAE+ F+N + + + IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDAEKFRDFFNQNDTGDPSKDTSVILTVEGRTFPVDIFYIQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--QREDLK--LLILPMHG 457
++ V+TA+KIH+ GDILAF+ G E++E ++ +L + R ++ L +LPM+
Sbjct: 258 IKSTVETAMKIHQMENDGDILAFLTGQEEVETVVSMLIEQARALSRTGMRKHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ +Q+KVF R++RK+++ATN+AETSITI GI YVID GFVK R +NP T L
Sbjct: 318 GLPSPDQMKVFERVSRSVRKVIVATNVAETSITIHGIAYVIDCGFVKLRAYNPKTAIECL 377
Query: 518 VVVPISK 524
VVVP+SK
Sbjct: 378 VVVPVSK 384
|
|
| RGD|1311165 Dhx35 "DEAH (Asp-Glu-Ala-His) box polypeptide 35" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 415 (151.1 bits), Expect = 2.2e-68, Sum P(3) = 2.2e-68
Identities = 85/187 (45%), Positives = 127/187 (67%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSN-----ATILSVKGHLYPVSVYYSNDPVVNY 401
KR L+LI++SAT+DAE+ F+N + +S+ IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLIVASATLDAEKFRDFFNQNETSDPARDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ VDT +KIH++ GDILAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 258 IKATVDTVVKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALARTGMKKHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF ++RK+++ATN+AETSITI GIVYVID GF+K R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSHSVRKVIVATNVAETSITISGIVYVIDCGFMKLRAYNPRTAIECL 377
Query: 518 VVVPISK 524
VVVP+S+
Sbjct: 378 VVVPVSQ 384
|
|
| UNIPROTKB|E2RQN7 DHX35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 416 (151.5 bits), Expect = 6.0e-68, Sum P(3) = 6.0e-68
Identities = 87/207 (42%), Positives = 130/207 (62%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNAT-----ILSVKGHLYPVSVYYSNDPVVNY 401
KR L+L+++SAT+DAE+ F+N + +S+ T IL+V+G +PV ++Y PV +Y
Sbjct: 198 KRGDLRLLVASATLDAEKFRDFFNQNETSDPTRDTCVILTVEGRTFPVDIFYLQSPVPDY 257
Query: 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLK--LLILPMHG 457
++ V+T +KIH++ GDILAF+ G E++E ++ +L + R +K L +LPM+
Sbjct: 258 IKSTVETVMKIHQTEGDGDILAFLTGQEEVETVVSMLIEQARALGRTGMKRHLRVLPMYA 317
Query: 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
LP+ EQ+KVF R++RK+++ATN+AETSITI GIVYVID GFVK R +NP T L
Sbjct: 318 GLPSFEQMKVFERVSRSVRKVIVATNVAETSITISGIVYVIDCGFVKLRAYNPRTTIECL 377
Query: 518 VVVPISKXXXXXXXXXXXXXXXXHVYR 544
VV P+S+ YR
Sbjct: 378 VVAPVSQASANQRAGRAGRSRSGKCYR 404
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q7QGX9 | MED18_ANOGA | No assigned EC number | 0.5592 | 0.1981 | 0.8056 | yes | N/A |
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 3.6.4 | LOW CONFIDENCE prediction! |
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 858 | |||
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 3e-59 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 6e-44 | |
| pfam09637 | 243 | pfam09637, Med18, Med18 protein | 2e-41 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 1e-37 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 2e-34 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 6e-34 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 3e-29 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 4e-25 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 1e-24 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 3e-24 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 5e-15 | |
| smart00490 | 82 | smart00490, HELICc, helicase superfamily c-termina | 5e-14 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 1e-13 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 2e-13 | |
| cd00046 | 144 | cd00046, DEXDc, DEAD-like helicases superfamily | 2e-13 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 4e-13 | |
| TIGR01970 | 819 | TIGR01970, DEAH_box_HrpB, ATP-dependent helicase H | 2e-12 | |
| PRK11131 | 1294 | PRK11131, PRK11131, ATP-dependent RNA helicase Hrp | 4e-12 | |
| pfam00271 | 78 | pfam00271, Helicase_C, Helicase conserved C-termin | 4e-12 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 8e-11 | |
| PRK11664 | 812 | PRK11664, PRK11664, ATP-dependent RNA helicase Hrp | 1e-10 | |
| pfam07717 | 109 | pfam07717, OB_NTP_bind, Oligonucleotide/oligosacch | 1e-09 | |
| smart00487 | 201 | smart00487, DEXDc, DEAD-like helicases superfamily | 3e-09 | |
| cd00079 | 131 | cd00079, HELICc, Helicase superfamily c-terminal d | 7e-09 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 4e-07 | |
| pfam04408 | 91 | pfam04408, HA2, Helicase associated domain (HA2) | 6e-07 | |
| COG1643 | 845 | COG1643, HrpA, HrpA-like helicases [DNA replicatio | 3e-06 | |
| smart00847 | 82 | smart00847, HA2, Helicase associated domain (HA2) | 9e-06 | |
| PHA02653 | 675 | PHA02653, PHA02653, RNA helicase NPH-II; Provision | 8e-05 | |
| TIGR01967 | 1283 | TIGR01967, DEAH_box_HrpA, ATP-dependent helicase H | 7e-04 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 3e-59
Identities = 87/208 (41%), Positives = 118/208 (56%), Gaps = 9/208 (4%)
Query: 338 AFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDP 397
+ L +R LKLII SAT+DAE ++ NA ++ ++G YPV + Y +
Sbjct: 183 GLLKDLLARRRDDLKLIIMSATLDAERFSAYFG-----NAPVIEIEGRTYPVEIRYLPEA 237
Query: 398 VVNY-VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH 456
+Y + + A+ IH G IL F+ G +IE L++ + L ILP++
Sbjct: 238 EADYILLDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDD---LEILPLY 294
Query: 457 GSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNS 516
G+L EQ++VF P P RK+V+ATNIAETS+TIPGI YVID G K + ++P T
Sbjct: 295 GALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTR 354
Query: 517 LVVVPISKASAVQRAGRAGRVRSGHVYR 544
L PISKASA QRAGRAGR G YR
Sbjct: 355 LETEPISKASADQRAGRAGRTGPGICYR 382
|
Length = 845 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 170 bits (434), Expect = 6e-44
Identities = 60/115 (52%), Positives = 81/115 (70%), Gaps = 2/115 (1%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
Q+LLE G K IG T+PRR++ S+A RV+EEL LG TVGY+IRF+ + T+
Sbjct: 84 QFLLEEGLGIAGK-IGCTQPRRLAARSVAERVAEELGEKLGETVGYSIRFESKVSPR-TR 141
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDF 701
IK MT+GIL+RE+ DPLL YSV+++DE HER++ TDIL+GLLK +L + D
Sbjct: 142 IKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDL 196
|
Length = 845 |
| >gnl|CDD|220325 pfam09637, Med18, Med18 protein | Back alignment and domain information |
|---|
Score = 151 bits (384), Expect = 2e-41
Identities = 78/233 (33%), Positives = 109/233 (46%), Gaps = 30/233 (12%)
Query: 138 LLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSI-----------RGNQTQP 186
L GSV D VE+LLHRL GL P+TF + + F + Q Q
Sbjct: 3 LSLYGSVPDGDVELLLHRLAGLTGM---QPQTFLERRLVFKPNRSYKPENLPGKNGQVQQ 59
Query: 187 LLLRVRRALDFPDMPYQLRYIG---QPEMGPLLLRVRRALDFPD-MPYQLRYIGQPEMGV 242
LR+RR L+ + Y L+ I + + G ++ + P+ LRY PE G
Sbjct: 60 TRLRLRRRLNRELLSYSLQIIYKVTEDDFGIEASKLFSGDEDDGEAPWTLRYSDIPEAG- 118
Query: 243 GDKARPTIVRSSIDVA-CSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMS 301
RP VR+ I+ S ++++FL E+G R D+EYI++G F KG + I +SK+FK+
Sbjct: 119 --NNRPVTVRTIIESDLPSGSLLQFLKELGYRFDYEYITKGVRFFKGDIVITLSKVFKIP 176
Query: 302 QGKPSDSGV---EPISQSYLVELSILAPGGQDVIGEDM-----KAFAEQLKPL 346
DS S SYLVE SI P G D+ + EQLK L
Sbjct: 177 DEGQEDSSPLELLDPSGSYLVEASINVPKGTDIEAMNKAVAELLKLKEQLKGL 229
|
Med18 is one subunit of Mediator, a head-module multiprotein complex, that stimulates basal RNA polymerase II (Pol II) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators. Length = 243 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 151 bits (382), Expect = 1e-37
Identities = 87/264 (32%), Positives = 132/264 (50%), Gaps = 26/264 (9%)
Query: 286 RKGRMKILVSKIF-KMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLK 344
R+ R++++ I +M Q P GV + E S+ A G A A ++
Sbjct: 89 RRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLDADLGL--------ALALDVQ 140
Query: 345 PLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYY----SNDPVVN 400
R LK++ SAT+D E + +A ++ +G +PV + Y + + +
Sbjct: 141 SSLREDLKILAMSATLDGERLSSLLP-----DAPVVESEGRSFPVEIRYLPLRGDQRLED 195
Query: 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460
V V+ A+ E+ G IL F+ G +I +++ +R D +LI P++G L
Sbjct: 196 AVSRAVEHALA-SET---GSILVFLPGQAEIRR----VQEQLAERLDSDVLICPLYGELS 247
Query: 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVV 520
Q + +P P+ RK+V+ATNIAETS+TI GI VID G + F+P T L V
Sbjct: 248 LAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETV 307
Query: 521 PISKASAVQRAGRAGRVRSGHVYR 544
IS+ASA QRAGRAGR+ G YR
Sbjct: 308 RISQASATQRAGRAGRLEPGVCYR 331
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 2e-34
Identities = 81/207 (39%), Positives = 117/207 (56%), Gaps = 23/207 (11%)
Query: 342 QLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYY------SN 395
+L P +R LK+II+SAT+D E + +N NA I+ V G YPV V Y ++
Sbjct: 211 ELLP-RRPDLKVIITSATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPIVEEAD 264
Query: 396 DPVVNYVQGVVDTAIKI-HESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLL-IL 453
D + +Q + D ++ E GDIL F+ G +I L + +L+ IL
Sbjct: 265 DTERDQLQAIFDAVDELGREGP--GDILIFMSGEREIRDTADAL-----NKLNLRHTEIL 317
Query: 454 PMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTL 513
P++ L N+EQ +VF+ + R+IV+ATN+AETS+T+PGI YVIDPG + ++ T
Sbjct: 318 PLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTK 375
Query: 514 TNSLVVVPISKASAVQRAGRAGRVRSG 540
L + PIS+ASA QR GR GRV G
Sbjct: 376 VQRLPIEPISQASANQRKGRCGRVSEG 402
|
Length = 1294 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-34
Identities = 78/200 (39%), Positives = 115/200 (57%), Gaps = 18/200 (9%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYY------SNDPVVN 400
+R LK+II+SAT+D E + +N NA I+ V G YPV V Y D ++
Sbjct: 208 RRPDLKIIITSATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLD 262
Query: 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460
++ ++D ++ P GDIL F+ G +I IL++ + + + ILP++ L
Sbjct: 263 QLEAILDAVDELFAEGP-GDILIFLPGEREIRDAAEILRKRNLRHTE----ILPLYARLS 317
Query: 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVV 520
N EQ +VF+P + R+IV+ATN+AETS+T+PGI YVID G + ++ T L +
Sbjct: 318 NKEQQRVFQP--HSGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIE 375
Query: 521 PISKASAVQRAGRAGRVRSG 540
PIS+ASA QR GR GRV G
Sbjct: 376 PISQASANQRKGRCGRVAPG 395
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 124 bits (314), Expect = 3e-29
Identities = 74/208 (35%), Positives = 105/208 (50%), Gaps = 26/208 (12%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYY----SNDPVVNYVQ 403
R LKL+I SAT+D + + Q +A ++ +G +PV Y ++
Sbjct: 147 RDDLKLLIMSATLDNDRLQQLL-----PDAPVIVSEGRSFPVERRYQPLPAHQRFDE--- 198
Query: 404 GVVDTAIK---IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460
V A ES G +L F+ G+ +I+ + L D+ L+ P++G+L
Sbjct: 199 -AVARATAELLRQES---GSLLLFLPGVGEIQRVQEQL--ASRVASDV--LLCPLYGALS 250
Query: 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVV 520
EQ K P P RK+V+ATNIAETS+TI GI V+D G + F+P T LV
Sbjct: 251 LAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQ 310
Query: 521 PISKASAVQRAGRAGRVRSG---HVYRK 545
IS+AS QRAGRAGR+ G H+Y K
Sbjct: 311 RISQASMTQRAGRAGRLEPGICLHLYSK 338
|
Length = 812 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 4e-25
Identities = 50/109 (45%), Positives = 67/109 (61%), Gaps = 4/109 (3%)
Query: 46 RLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGI-HNILRFSFPSPPPAQNLRVALEL 104
RLY+E F E T PE+ RT+LS VLQLK+LGI +I F F PPP ++ AL L
Sbjct: 382 RLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTL 441
Query: 105 LYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGS--VLDSAVEI 151
L LGA+D +G LT P+G+ M+ +PL P A++LL++ L A I
Sbjct: 442 LQELGALDDSGKLT-PLGKQMSLLPLDPRLARMLLTAPEGGCLGEAATI 489
|
Length = 845 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 1e-24
Identities = 44/96 (45%), Positives = 65/96 (67%), Gaps = 1/96 (1%)
Query: 600 LIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREM 659
LIG T+PRR++ ++A R++EEL T LG VGY +RF D + + T +K MT+GIL+ E
Sbjct: 113 LIGHTQPRRLAARTVAQRIAEELGTPLGEKVGYKVRFHDQVSSN-TLVKLMTDGILLAET 171
Query: 660 MTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
D L +Y I++DE HER++ D L+G LK++L
Sbjct: 172 QQDRFLSRYDTIIIDEAHERSLNIDFLLGYLKQLLP 207
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 3e-24
Identities = 45/95 (47%), Positives = 70/95 (73%), Gaps = 1/95 (1%)
Query: 600 LIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREM 659
LIG T+PRR++ ++ANR++EEL T LG VGY +RF+D +++ T +K MT+GIL+ E+
Sbjct: 120 LIGHTQPRRLAARTVANRIAEELETELGGCVGYKVRFNDQVSDN-TMVKLMTDGILLAEI 178
Query: 660 MTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKIL 694
D LL +Y I++DE HER++ D ++G LK++L
Sbjct: 179 QQDRLLMQYDTIIIDEAHERSLNIDFILGYLKELL 213
|
Length = 1294 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 5e-15
Identities = 32/90 (35%), Positives = 54/90 (60%), Gaps = 1/90 (1%)
Query: 601 IGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMM 660
I + EPRR++ S A R++ +L +G TVGY +R ++ + T+++ +TEGIL R +
Sbjct: 48 IIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGENKVSRR-TRLEVVTEGILTRMIQ 106
Query: 661 TDPLLRKYSVIMLDEVHERTIFTDILMGLL 690
DP L ++ DE HER++ D+ + L
Sbjct: 107 DDPELDGVGALIFDEFHERSLDADLGLALA 136
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|197757 smart00490, HELICc, helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 5e-14
Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 18/91 (19%)
Query: 446 EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKA 505
++L + + +HG L E+ ++ K+++AT++AE + +PG+ VI
Sbjct: 8 KELGIKVARLHGGLSQEEREEILDKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDL--- 64
Query: 506 RWFNPNTLTNSLVVVPISKASAVQRAGRAGR 536
P S AS +QR GRAGR
Sbjct: 65 ---------------PWSPASYIQRIGRAGR 80
|
Length = 82 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 1e-13
Identities = 33/86 (38%), Positives = 55/86 (63%), Gaps = 1/86 (1%)
Query: 605 EPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPL 664
EPRR++ ++A R++E+L G TVGY +R + + T+++ +TEGIL R + DP
Sbjct: 55 EPRRLAARNVAQRLAEQLGEKPGETVGYRMRAESKVGPN-TRLEVVTEGILTRMIQRDPE 113
Query: 665 LRKYSVIMLDEVHERTIFTDILMGLL 690
L +++LDE HER++ D+ + LL
Sbjct: 114 LSGVGLVILDEFHERSLQADLALALL 139
|
Length = 812 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-13
Identities = 38/99 (38%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 46 RLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELL 105
RLY+E F+ E T PE+ RT L+S +LQ+ AL + +I F F P + +R LL
Sbjct: 399 RLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLL 458
Query: 106 YSLGAMD---VNGNLTKPVGETMAEMPLHPIHAKVLLSS 141
LGA+D LT P+G +A++P+ P A++LL +
Sbjct: 459 EELGALDDDEAEPQLT-PIGRQLAQLPVDPRLARMLLEA 496
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
| >gnl|CDD|238005 cd00046, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 2e-13
Identities = 30/123 (24%), Positives = 47/123 (38%), Gaps = 8/123 (6%)
Query: 583 FSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTE 642
+ +LE + + P R +A R+ E G VGY I +
Sbjct: 15 LAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFG--EGIKVGYLIGGTSIKQQ 72
Query: 643 DV-----TKIKYMTEGILMREMMTDPL-LRKYSVIMLDEVHERTIFTDILMGLLKKILKD 696
+ T I T G L+ E+ L L+K +++LDE H L+GL +
Sbjct: 73 EKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLP 132
Query: 697 KER 699
K+R
Sbjct: 133 KDR 135
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. Length = 144 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 4e-13
Identities = 42/180 (23%), Positives = 63/180 (35%), Gaps = 34/180 (18%)
Query: 699 RDFECSDEIASILSLLQVQDI---FIKPSSGALSLKARVL-----RRNFEVEQGDLLTLL 750
+ C E A+I S+L QD F + A+ L RRN +GD L LL
Sbjct: 478 PEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRNAADPRGDHLLLL 537
Query: 751 NIF------KFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKK------SSIPL- 797
F K + + + C F K L RA + +++ ++ +
Sbjct: 538 EAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEID 597
Query: 798 ------------VTSPRNTNAVLKCLTNGFFSNAAYLHYSGV-YRTVRGNEDLYIHPSSV 844
S + + L G N A L G Y T+ N ++ HPSSV
Sbjct: 598 EDEWAAQHLPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSV 657
|
Length = 845 |
| >gnl|CDD|233660 TIGR01970, DEAH_box_HrpB, ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Score = 71.0 bits (174), Expect = 2e-12
Identities = 60/201 (29%), Positives = 88/201 (43%), Gaps = 20/201 (9%)
Query: 46 RLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELL 105
RL++E +L PE+ + +LS L+L G + + PP+ L A +LL
Sbjct: 331 RLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLL 390
Query: 106 YSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGS--VLDSAVEI--LL---HRLRG 158
LGA+D G LT G+ MA + HP A +LLS+ S + A ++ LL R
Sbjct: 391 QRLGALDAQGRLTA-HGKAMAALGCHPRLAAMLLSAHSTGLAALACDLAALLEERGLPRQ 449
Query: 159 LCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLR 218
++ + H + RG + Q L ++RR L F I +G LL
Sbjct: 450 GGADLMN---RLHRLQQGRQGRGQRAQQLAKKLRRRLRFSQAD--SGAIASHALGLLL-- 502
Query: 219 VRRALDFPDMPYQLRYIGQPE 239
AL FPD + R GQP
Sbjct: 503 ---ALAFPDRIAKRR--GQPG 518
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 819 |
| >gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 4e-12
Identities = 37/101 (36%), Positives = 59/101 (58%), Gaps = 6/101 (5%)
Query: 46 RLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELL 105
RLY+E F E T PE+ RT L+S +LQ+ ALG+ +I F F P +N++ + LL
Sbjct: 406 RLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLL 465
Query: 106 YSLGAMDVNGN-----LTKPVGETMAEMPLHPIHAKVLLSS 141
LGA+ + LT P+G +A++P+ P A+++L +
Sbjct: 466 EELGAITTDEQASAYKLT-PLGRQLAQLPVDPRLARMVLEA 505
|
Length = 1294 |
| >gnl|CDD|201125 pfam00271, Helicase_C, Helicase conserved C-terminal domain | Back alignment and domain information |
|---|
Score = 62.2 bits (152), Expect = 4e-12
Identities = 22/94 (23%), Positives = 38/94 (40%), Gaps = 18/94 (19%)
Query: 444 QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFV 503
+ + +HG L E+ ++ K+++AT++A I +P + VI+
Sbjct: 2 LLRKPGIKVARLHGGLSQEEREEILEDFRNGKSKVLVATDVAGRGIDLPDVNLVINYDL- 60
Query: 504 KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537
P + AS +QR GRAGR
Sbjct: 61 -----------------PWNPASYIQRIGRAGRA 77
|
The Prosite family is restricted to DEAD/H helicases, whereas this domain family is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. Length = 78 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 8e-11
Identities = 28/53 (52%), Positives = 34/53 (64%), Gaps = 3/53 (5%)
Query: 101 ALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSV--LDSAVEI 151
ALELLY LGA+D +G LT P+G MAE+PL P K+LL S LD + I
Sbjct: 2 ALELLYELGALDDDGELT-PLGRQMAELPLDPRLGKMLLLSAEFGCLDEILTI 53
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|236950 PRK11664, PRK11664, ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-10
Identities = 31/98 (31%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 46 RLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELL 105
LY++ + + PE+ ++LS +L+L G H+ + S+ PPA L A LL
Sbjct: 334 HLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLL 393
Query: 106 YSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGS 143
LGA+D G LT G MA + P A +L+++
Sbjct: 394 QQLGALDGQGRLT-ARGRKMAALGNDPRLAAMLVAAKE 430
|
Length = 812 |
| >gnl|CDD|219532 pfam07717, OB_NTP_bind, Oligonucleotide/oligosaccharide-binding (OB)-fold | Back alignment and domain information |
|---|
Score = 56.2 bits (136), Expect = 1e-09
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 784 NQMILLLKKSSIPLVT------SPRNTNAVLKCLTNGFFSNAAYLHYSGVY-RTVRGNED 836
Q++ +L++ +P S + + K L G F N A L +T++ +
Sbjct: 1 KQLLEILERLGLPEEPSSLLNSSSNDYELIRKALCAGLFPNVARLVDEKGEYKTLKEGQP 60
Query: 837 LYIHPSSVLYTLQQPQC 853
++IHPSSVL+ + P+
Sbjct: 61 VFIHPSSVLFGKKPPEW 77
|
This family is found towards the C-terminus of the DEAD-box helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. There do seem to be a couple of instances where it occurs by itself - . The structure PDB:3i4u adopts an OB-fold. helicases (pfam00270). In these helicases it is apparently always found in association with pfam04408. This C-terminal domain of the yeast helicase contains an oligonucleotide/oligosaccharide-binding (OB)-fold which seems to be placed at the entrance of the putative nucleic acid cavity. It also constitutes the binding site for the G-patch-containing domain of Pfa1p. When found on DEAH/RHA helicases, this domain is central to the regulation of the helicase activity through its binding of both RNA and G-patch domain proteins. Length = 109 |
| >gnl|CDD|214692 smart00487, DEXDc, DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Score = 57.5 bits (139), Expect = 3e-09
Identities = 27/124 (21%), Positives = 41/124 (33%), Gaps = 10/124 (8%)
Query: 583 FSFFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYT------IRF 636
+ LEA + + P R A + + + VG +
Sbjct: 39 LAALLPALEALKRGKGGRVLVLVPTRELAEQWAEELKKLGPSLGLKVVGLYGGDSKREQL 98
Query: 637 DDCTTEDVTKIKYMTEGILMREMMTDPL-LRKYSVIMLDEVHERT--IFTDILMGLLKKI 693
T I T G L+ + D L L +++LDE H F D L LLK +
Sbjct: 99 RKL-ESGKTDILVTTPGRLLDLLENDKLSLSNVDLVILDEAHRLLDGGFGDQLEKLLKLL 157
Query: 694 LKDK 697
K+
Sbjct: 158 PKNV 161
|
Length = 201 |
| >gnl|CDD|238034 cd00079, HELICc, Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 7e-09
Identities = 29/144 (20%), Positives = 56/144 (38%), Gaps = 33/144 (22%)
Query: 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE- 463
+ +K H G +L F + ++ + +L++ + + +HG E
Sbjct: 16 ALLELLKEHLKKG-GKVLIFCPSKKMLDELAELLRK-------PGIKVAALHGDGSQEER 67
Query: 464 --QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVP 521
+K FR +++AT++ I +P + VI+ ++ P
Sbjct: 68 EEVLKDFREGEI---VVLVATDVIARGIDLPNVSVVIN--------YDL----------P 106
Query: 522 ISKASAVQRAGRAGRV-RSGHVYR 544
S +S +QR GRAGR + G
Sbjct: 107 WSPSSYLQRIGRAGRAGQKGTAIL 130
|
Length = 131 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 4e-07
Identities = 22/46 (47%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Query: 107 SLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVLDSAVEIL 152
LGA+D +G LT P+G MAE+PL P AK+LL + + EIL
Sbjct: 1 ELGALDDDGRLT-PLGRKMAELPLDPRLAKMLL-AAAEFGCLDEIL 44
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|218070 pfam04408, HA2, Helicase associated domain (HA2) | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 6e-07
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 699 RDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLL 750
+F C DEI +I ++L V F +P +A RR F + D LTLL
Sbjct: 42 AEFGCLDEILTIAAMLSVPSPFYRPKE--KEEEADAARRKFASAESDHLTLL 91
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 91 |
| >gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 3e-06
Identities = 18/38 (47%), Positives = 29/38 (76%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILM 38
MT+GIL+ +DP + YSV+++D+ HER++ TDIL+
Sbjct: 145 MTDGILLREIQNDPLLSGYSVVIIDEAHERSLNTDILL 182
|
Length = 845 |
| >gnl|CDD|214852 smart00847, HA2, Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-06
Identities = 18/52 (34%), Positives = 24/52 (46%), Gaps = 4/52 (7%)
Query: 699 RDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLL 750
+F C DEI +I+++L V D K RR F + D LTLL
Sbjct: 35 AEFGCLDEILTIVAMLSVGDPRPKEKREDADAA----RRRFADPESDHLTLL 82
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. Length = 82 |
| >gnl|CDD|177443 PHA02653, PHA02653, RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 15/122 (12%)
Query: 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPN-NEQIKVFRPTPRAMRKIVIAT 482
FV + Q E L++ +HG +PN +E ++ + I+I+T
Sbjct: 401 FVASVSQCEEYKKYLEKRLPI-----YDFYIIHGKVPNIDEILEKVYSSKNP--SIIIST 453
Query: 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSG-H 541
E+S+TI +V D G R + P + ISK+ QR GR GRV G +
Sbjct: 454 PYLESSVTIRNATHVYDTG----RVYVPEPFGGKEMF--ISKSMRTQRKGRVGRVSPGTY 507
Query: 542 VY 543
VY
Sbjct: 508 VY 509
|
Length = 675 |
| >gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 7e-04
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 10/163 (6%)
Query: 690 LKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749
L ++L + R C E+ I S L +QD +P A F+ + D L+
Sbjct: 489 LARMLLEAHR-LGCLQEVLIIASALSIQDPRERPM--EKQQAADQAHARFKDPRSDFLSR 545
Query: 750 LNIFKFYEKQE---NKKQF---CHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRN 803
+N+++ E+Q + QF C K + NY ++ ++ Q+ ++K+ + L P +
Sbjct: 546 VNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPAD 605
Query: 804 TNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLY 846
+A+ K L +G S Y RG + +I P S L+
Sbjct: 606 YDAIHKALLSGLLSQIGMKDEKHEYDGARGRK-FHIFPGSPLF 647
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing [Unknown function, Enzymes of unknown specificity]. Length = 1283 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| KOG0922|consensus | 674 | 100.0 | ||
| KOG0924|consensus | 1042 | 100.0 | ||
| KOG0923|consensus | 902 | 100.0 | ||
| KOG0925|consensus | 699 | 100.0 | ||
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 100.0 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| KOG0926|consensus | 1172 | 100.0 | ||
| KOG0920|consensus | 924 | 100.0 | ||
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 100.0 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 100.0 | |
| KOG0330|consensus | 476 | 100.0 | ||
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 100.0 | |
| KOG0331|consensus | 519 | 100.0 | ||
| KOG0921|consensus | 1282 | 100.0 | ||
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 100.0 | |
| KOG0328|consensus | 400 | 100.0 | ||
| KOG0333|consensus | 673 | 100.0 | ||
| KOG0338|consensus | 691 | 100.0 | ||
| KOG0923|consensus | 902 | 100.0 | ||
| KOG0343|consensus | 758 | 100.0 | ||
| KOG0922|consensus | 674 | 100.0 | ||
| KOG0342|consensus | 543 | 100.0 | ||
| KOG0345|consensus | 567 | 100.0 | ||
| KOG0326|consensus | 459 | 100.0 | ||
| KOG0340|consensus | 442 | 100.0 | ||
| KOG0336|consensus | 629 | 100.0 | ||
| KOG0332|consensus | 477 | 100.0 | ||
| KOG0924|consensus | 1042 | 100.0 | ||
| KOG0339|consensus | 731 | 100.0 | ||
| PTZ00110 | 545 | helicase; Provisional | 100.0 | |
| KOG0335|consensus | 482 | 100.0 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 100.0 | |
| KOG0925|consensus | 699 | 100.0 | ||
| KOG0348|consensus | 708 | 100.0 | ||
| PRK04837 | 423 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK11192 | 434 | ATP-dependent RNA helicase SrmB; Provisional | 100.0 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 100.0 | |
| PRK10590 | 456 | ATP-dependent RNA helicase RhlE; Provisional | 100.0 | |
| PLN00206 | 518 | DEAD-box ATP-dependent RNA helicase; Provisional | 100.0 | |
| KOG0347|consensus | 731 | 100.0 | ||
| PRK04537 | 572 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| KOG0341|consensus | 610 | 100.0 | ||
| KOG0327|consensus | 397 | 100.0 | ||
| PRK01297 | 475 | ATP-dependent RNA helicase RhlB; Provisional | 100.0 | |
| PRK02362 | 737 | ski2-like helicase; Provisional | 100.0 | |
| KOG0334|consensus | 997 | 100.0 | ||
| PRK01172 | 674 | ski2-like helicase; Provisional | 100.0 | |
| PTZ00424 | 401 | helicase 45; Provisional | 100.0 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 100.0 | |
| TIGR03817 | 742 | DECH_helic helicase/secretion neighborhood putativ | 99.98 | |
| KOG0346|consensus | 569 | 99.97 | ||
| KOG4284|consensus | 980 | 99.97 | ||
| KOG0926|consensus | 1172 | 99.97 | ||
| PRK00254 | 720 | ski2-like helicase; Provisional | 99.97 | |
| KOG0350|consensus | 620 | 99.97 | ||
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 99.96 | |
| TIGR00614 | 470 | recQ_fam ATP-dependent DNA helicase, RecQ family. | 99.96 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 99.96 | |
| KOG0337|consensus | 529 | 99.96 | ||
| TIGR02621 | 844 | cas3_GSU0051 CRISPR-associated helicase Cas3, Anae | 99.96 | |
| KOG0344|consensus | 593 | 99.96 | ||
| PRK13767 | 876 | ATP-dependent helicase; Provisional | 99.96 | |
| PRK11057 | 607 | ATP-dependent DNA helicase RecQ; Provisional | 99.95 | |
| PLN03137 | 1195 | ATP-dependent DNA helicase; Q4-like; Provisional | 99.95 | |
| PRK09751 | 1490 | putative ATP-dependent helicase Lhr; Provisional | 99.95 | |
| PRK10689 | 1147 | transcription-repair coupling factor; Provisional | 99.95 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 99.94 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 99.94 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 99.93 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 99.93 | |
| TIGR01587 | 358 | cas3_core CRISPR-associated helicase Cas3. This mo | 99.93 | |
| TIGR01389 | 591 | recQ ATP-dependent DNA helicase RecQ. The ATP-depe | 99.93 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 99.93 | |
| COG1204 | 766 | Superfamily II helicase [General function predicti | 99.91 | |
| PRK12898 | 656 | secA preprotein translocase subunit SecA; Reviewed | 99.91 | |
| PRK09401 | 1176 | reverse gyrase; Reviewed | 99.9 | |
| KOG0329|consensus | 387 | 99.9 | ||
| PRK09200 | 790 | preprotein translocase subunit SecA; Reviewed | 99.9 | |
| KOG0920|consensus | 924 | 99.89 | ||
| TIGR03714 | 762 | secA2 accessory Sec system translocase SecA2. Memb | 99.88 | |
| TIGR03158 | 357 | cas3_cyano CRISPR-associated helicase, Cyano-type. | 99.88 | |
| KOG0349|consensus | 725 | 99.88 | ||
| COG1202 | 830 | Superfamily II helicase, archaea-specific [General | 99.88 | |
| TIGR00963 | 745 | secA preprotein translocase, SecA subunit. The pro | 99.87 | |
| PHA02558 | 501 | uvsW UvsW helicase; Provisional | 99.86 | |
| TIGR01054 | 1171 | rgy reverse gyrase. Generally, these gyrases are e | 99.86 | |
| PRK14701 | 1638 | reverse gyrase; Provisional | 99.85 | |
| COG1201 | 814 | Lhr Lhr-like helicases [General function predictio | 99.85 | |
| PRK13766 | 773 | Hef nuclease; Provisional | 99.82 | |
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 99.81 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 99.81 | |
| COG1111 | 542 | MPH1 ERCC4-like helicases [DNA replication, recomb | 99.78 | |
| KOG3264|consensus | 221 | 99.76 | ||
| COG0514 | 590 | RecQ Superfamily II DNA helicase [DNA replication, | 99.75 | |
| PRK13104 | 896 | secA preprotein translocase subunit SecA; Reviewed | 99.73 | |
| PRK09694 | 878 | helicase Cas3; Provisional | 99.73 | |
| COG1205 | 851 | Distinct helicase family with a unique C-terminal | 99.73 | |
| TIGR00603 | 732 | rad25 DNA repair helicase rad25. All proteins in t | 99.73 | |
| PRK12906 | 796 | secA preprotein translocase subunit SecA; Reviewed | 99.7 | |
| PRK12904 | 830 | preprotein translocase subunit SecA; Reviewed | 99.7 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 99.65 | |
| KOG0354|consensus | 746 | 99.65 | ||
| PRK13107 | 908 | preprotein translocase subunit SecA; Reviewed | 99.62 | |
| KOG0951|consensus | 1674 | 99.59 | ||
| KOG0952|consensus | 1230 | 99.59 | ||
| COG1197 | 1139 | Mfd Transcription-repair coupling factor (superfam | 99.55 | |
| TIGR00631 | 655 | uvrb excinuclease ABC, B subunit. This family is b | 99.54 | |
| KOG0351|consensus | 941 | 99.52 | ||
| KOG0352|consensus | 641 | 99.52 | ||
| COG4581 | 1041 | Superfamily II RNA helicase [DNA replication, reco | 99.5 | |
| KOG0947|consensus | 1248 | 99.47 | ||
| PRK05298 | 652 | excinuclease ABC subunit B; Provisional | 99.47 | |
| PRK04914 | 956 | ATP-dependent helicase HepA; Validated | 99.46 | |
| KOG0948|consensus | 1041 | 99.46 | ||
| COG4098 | 441 | comFA Superfamily II DNA/RNA helicase required for | 99.46 | |
| cd00079 | 131 | HELICc Helicase superfamily c-terminal domain; ass | 99.46 | |
| PRK12900 | 1025 | secA preprotein translocase subunit SecA; Reviewed | 99.44 | |
| PF00271 | 78 | Helicase_C: Helicase conserved C-terminal domain; | 99.43 | |
| COG1061 | 442 | SSL2 DNA or RNA helicases of superfamily II [Trans | 99.38 | |
| PRK11448 | 1123 | hsdR type I restriction enzyme EcoKI subunit R; Pr | 99.37 | |
| PF07717 | 114 | OB_NTP_bind: Oligonucleotide/oligosaccharide-bindi | 99.36 | |
| PRK12899 | 970 | secA preprotein translocase subunit SecA; Reviewed | 99.3 | |
| KOG0353|consensus | 695 | 99.27 | ||
| KOG0950|consensus | 1008 | 99.25 | ||
| COG1203 | 733 | CRISPR-associated helicase Cas3 [Defense mechanism | 99.25 | |
| smart00490 | 82 | HELICc helicase superfamily c-terminal domain. | 99.25 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 99.24 | |
| PHA02653 | 675 | RNA helicase NPH-II; Provisional | 99.16 | |
| KOG0953|consensus | 700 | 99.08 | ||
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 99.04 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 98.93 | |
| KOG0921|consensus | 1282 | 98.88 | ||
| COG1198 | 730 | PriA Primosomal protein N' (replication factor Y) | 98.81 | |
| PRK12326 | 764 | preprotein translocase subunit SecA; Reviewed | 98.81 | |
| PF04408 | 102 | HA2: Helicase associated domain (HA2); InterPro: I | 98.73 | |
| smart00847 | 92 | HA2 Helicase associated domain (HA2) Add an annota | 98.67 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 98.59 | |
| TIGR00348 | 667 | hsdR type I site-specific deoxyribonuclease, HsdR | 98.57 | |
| PRK13103 | 913 | secA preprotein translocase subunit SecA; Reviewed | 98.57 | |
| PF00270 | 169 | DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 | 98.55 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 98.52 | |
| CHL00122 | 870 | secA preprotein translocase subunit SecA; Validate | 98.24 | |
| KOG4150|consensus | 1034 | 98.19 | ||
| PRK12903 | 925 | secA preprotein translocase subunit SecA; Reviewed | 98.16 | |
| PRK12902 | 939 | secA preprotein translocase subunit SecA; Reviewed | 98.11 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 98.07 | |
| TIGR02562 | 1110 | cas3_yersinia CRISPR-associated helicase Cas3. The | 98.02 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 97.97 | |
| PLN03142 | 1033 | Probable chromatin-remodeling complex ATPase chain | 97.94 | |
| COG4096 | 875 | HsdR Type I site-specific restriction-modification | 97.87 | |
| PF06862 | 442 | DUF1253: Protein of unknown function (DUF1253); In | 97.87 | |
| KOG1123|consensus | 776 | 97.77 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 97.72 | |
| PRK12901 | 1112 | secA preprotein translocase subunit SecA; Reviewed | 97.65 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 97.52 | |
| PF07652 | 148 | Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR | 97.29 | |
| KOG0951|consensus | 1674 | 96.98 | ||
| KOG0949|consensus | 1330 | 96.88 | ||
| PF02399 | 824 | Herpes_ori_bp: Origin of replication binding prote | 96.79 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.66 | |
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 96.57 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 96.47 | |
| TIGR00604 | 705 | rad3 DNA repair helicase (rad3). All proteins in t | 96.05 | |
| COG1199 | 654 | DinG Rad3-related DNA helicases [Transcription / D | 95.86 | |
| PF09637 | 250 | Med18: Med18 protein; InterPro: IPR019095 The Medi | 95.34 | |
| PRK07246 | 820 | bifunctional ATP-dependent DNA helicase/DNA polyme | 95.28 | |
| PF13307 | 167 | Helicase_C_2: Helicase C-terminal domain; PDB: 4A1 | 94.35 | |
| PRK01172 | 674 | ski2-like helicase; Provisional | 94.33 | |
| KOG0392|consensus | 1549 | 94.2 | ||
| KOG0391|consensus | 1958 | 94.09 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 93.98 | |
| COG0653 | 822 | SecA Preprotein translocase subunit SecA (ATPase, | 93.69 | |
| KOG0385|consensus | 971 | 93.44 | ||
| PF13245 | 76 | AAA_19: Part of AAA domain | 92.83 | |
| KOG0387|consensus | 923 | 92.68 | ||
| TIGR03117 | 636 | cas_csf4 CRISPR-associated DEAD/DEAH-box helicase | 92.54 | |
| TIGR01407 | 850 | dinG_rel DnaQ family exonuclease/DinG family helic | 92.36 | |
| KOG2340|consensus | 698 | 91.57 | ||
| PRK05580 | 679 | primosome assembly protein PriA; Validated | 90.22 | |
| KOG0347|consensus | 731 | 89.96 | ||
| COG0553 | 866 | HepA Superfamily II DNA/RNA helicases, SNF2 family | 89.82 | |
| TIGR00596 | 814 | rad1 DNA repair protein (rad1). This family is bas | 89.69 | |
| COG0513 | 513 | SrmB Superfamily II DNA and RNA helicases [DNA rep | 89.56 | |
| TIGR00595 | 505 | priA primosomal protein N'. All proteins in this f | 89.29 | |
| KOG0390|consensus | 776 | 89.14 | ||
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 88.87 | |
| KOG0389|consensus | 941 | 88.85 | ||
| PF04851 | 184 | ResIII: Type III restriction enzyme, res subunit; | 88.6 | |
| COG1110 | 1187 | Reverse gyrase [DNA replication, recombination, an | 88.25 | |
| PRK08074 | 928 | bifunctional ATP-dependent DNA helicase/DNA polyme | 85.81 | |
| KOG0388|consensus | 1185 | 85.71 | ||
| PRK14873 | 665 | primosome assembly protein PriA; Provisional | 85.7 | |
| TIGR00580 | 926 | mfd transcription-repair coupling factor (mfd). Al | 85.21 | |
| KOG0384|consensus | 1373 | 84.64 | ||
| PRK11747 | 697 | dinG ATP-dependent DNA helicase DinG; Provisional | 83.9 | |
| COG0556 | 663 | UvrB Helicase subunit of the DNA excision repair c | 82.91 | |
| cd00268 | 203 | DEADc DEAD-box helicases. A diverse family of prot | 82.84 | |
| PRK11634 | 629 | ATP-dependent RNA helicase DeaD; Provisional | 82.45 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 81.68 | |
| KOG1000|consensus | 689 | 80.97 | ||
| PRK11776 | 460 | ATP-dependent RNA helicase DbpA; Provisional | 80.83 |
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-117 Score=991.26 Aligned_cols=554 Identities=36% Similarity=0.587 Sum_probs=517.9
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++|+|||||| +++|+++.. .|...... +-|.+|+|+||.++|+|||+|+|+++|.. |||.
T Consensus 70 IviGeTGsGKS-------TQipQyL~e--------aG~~~~g~-I~~TQPRRVAavslA~RVAeE~~~~lG~~---VGY~ 130 (674)
T KOG0922|consen 70 IVIGETGSGKS-------TQIPQYLAE--------AGFASSGK-IACTQPRRVAAVSLAKRVAEEMGCQLGEE---VGYT 130 (674)
T ss_pred EEEcCCCCCcc-------ccHhHHHHh--------cccccCCc-EEeecCchHHHHHHHHHHHHHhCCCcCce---eeeE
Confidence 35799999999 999999843 33333333 78899999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+||++.+++.|+|+|+|+|.||+ ++.||.|++|+|| |++. +|+++|++|.+. ..|+++++|+|
T Consensus 131 IRFed~ts~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~----TDiLlGlLKki~-----~~R~~LklIim 201 (674)
T KOG0922|consen 131 IRFEDSTSKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLH----TDILLGLLKKIL-----KKRPDLKLIIM 201 (674)
T ss_pred EEecccCCCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhH----HHHHHHHHHHHH-----hcCCCceEEEE
Confidence 99999999999999999999999 9999999999999 9999 999999999999 88999999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIG 436 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~ 436 (858)
|||+|+++|++||+ ++|++.|+||.|||++.|.+.+..||+++.+.++.+||.++++|+||||++|++||+.+++
T Consensus 202 SATlda~kfS~yF~-----~a~i~~i~GR~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~ 276 (674)
T KOG0922|consen 202 SATLDAEKFSEYFN-----NAPILTIPGRTFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVFLTGQEEIEAACE 276 (674)
T ss_pred eeeecHHHHHHHhc-----CCceEeecCCCCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEEeCCHHHHHHHHH
Confidence 99999999999999 7999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCC
Q psy2470 437 ILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTN 515 (858)
Q Consensus 437 ~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~ 515 (858)
.|.+... ..+.....++|+||.|+.++|.+||++.+.|.||||+||||||+|||||||.||||+|++|++.|||+.|++
T Consensus 277 ~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~ 356 (674)
T KOG0922|consen 277 LLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLD 356 (674)
T ss_pred HHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCcc
Confidence 9986522 111112278999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhh
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAG 593 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~ 593 (858)
.|...|||++++.||+|||||+|+|+||||| ++|+.|++ . ++ |||+|++|+ .
T Consensus 357 ~L~v~~ISkasA~QRaGRAGRt~pGkcyRLYte~~~~~~~~-----~---~~---PEI~R~~Ls---------------~ 410 (674)
T KOG0922|consen 357 SLIVVPISKASANQRAGRAGRTGPGKCYRLYTESAYDKMPL-----Q---TV---PEIQRVNLS---------------S 410 (674)
T ss_pred ceeEEechHHHHhhhcccCCCCCCceEEEeeeHHHHhhccc-----C---CC---CceeeechH---------------H
Confidence 9999999999999999999999999999999 89999998 7 77 999999999 9
Q ss_pred HhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccce
Q psy2470 594 WCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYS 669 (858)
Q Consensus 594 ~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~ 669 (858)
.+|+++++++.++.+|+|+++ ++..|++.|..+|++ + +++. +|. +.|..|+++|++|.++++
T Consensus 411 ~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgal-----d-~~g~---lt~----p~G~~ma~~Pl~p~lsk~- 476 (674)
T KOG0922|consen 411 AVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGAL-----D-DRGK---LTS----PLGRQMAELPLEPHLSKM- 476 (674)
T ss_pred HHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcc-----c-CcCC---cCc----hHHhhhhhcCCCcchhhh-
Confidence 999999999999999999998 889999999999999 7 6666 772 399999999999999999
Q ss_pred eEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhH
Q psy2470 670 VIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749 (858)
Q Consensus 670 ~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltl 749 (858)
++. +..++|..++++|+|+||++++|+.|.+.+.. +++..|++|.+.+|||+|+
T Consensus 477 -----------------------ll~--s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~-~a~~~~~kf~~~eGDh~tl 530 (674)
T KOG0922|consen 477 -----------------------LLK--SSELGCSEEILTIAAMLSVQSVFSRPKDKKAE-DADRKRAKFANPEGDHLTL 530 (674)
T ss_pred -----------------------hhh--ccccCCcchhhhheeeeeccceecCccchhhh-hhhHHHHhhcCcccCHHHH
Confidence 999 89999999999999999999999999888732 4888999999999999999
Q ss_pred HHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCCcEE
Q psy2470 750 LNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSGVYR 829 (858)
Q Consensus 750 Lnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~ 829 (858)
||+|+.|.+++.+.+||++||+|++.|++|.+||+||.+++++.+++..+|..|.+.|+||||+|||.|+|+++.++.|+
T Consensus 531 L~vy~~~~~~~~~~~wC~en~i~~r~l~~a~~ir~QL~~i~~~~~~~~~s~~~d~~~i~k~l~aGff~N~A~~~~~~~Yr 610 (674)
T KOG0922|consen 531 LNVYESWKENGTSKKWCKENFINARSLKRAKDIRKQLRRILDKFGLPVSSCGGDMEKIRKCLCAGFFRNVAERDYQDGYR 610 (674)
T ss_pred HHHHHHHHhcCChhhHHHHhcccHHHHHHHHHHHHHHHHHHHHcCCCccCCCCCHHHHHHHHHHHHHHHHHHhhcCCCeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998444499
Q ss_pred eecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 830 TVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 830 t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
|+.++++|+|||||+||.++ |+|||||.
T Consensus 611 ti~~~~~v~IHPSS~l~~~~-p~~viy~e 638 (674)
T KOG0922|consen 611 TIRGGQPVYIHPSSVLFRRK-PEWVIYHE 638 (674)
T ss_pred EccCCcEEEEechHHhhcCC-CCEEEEEE
Confidence 99999999999999999854 99999984
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-114 Score=947.94 Aligned_cols=552 Identities=33% Similarity=0.490 Sum_probs=518.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-|+|+|||||| +|+|++++.-. .++.. .+-|.+|+|+||+++|++|++|||..+|.+ |||
T Consensus 374 vvivgETGSGKT-------TQl~QyL~edG--------Y~~~G-mIGcTQPRRvAAiSVAkrVa~EM~~~lG~~---VGY 434 (1042)
T KOG0924|consen 374 VVIVGETGSGKT-------TQLAQYLYEDG--------YADNG-MIGCTQPRRVAAISVAKRVAEEMGVTLGDT---VGY 434 (1042)
T ss_pred EEEEecCCCCch-------hhhHHHHHhcc--------cccCC-eeeecCchHHHHHHHHHHHHHHhCCccccc---cce
Confidence 557899999999 99999986533 33332 356789999999999999999999999999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.+||++++++.|.|.|+|+|.||+ .+.|..|.+|+|| |+++ +|.++|++|++. ..|.++++|+
T Consensus 435 sIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslN----tDilfGllk~~l-----arRrdlKliV 505 (1042)
T KOG0924|consen 435 SIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLN----TDILFGLLKKVL-----ARRRDLKLIV 505 (1042)
T ss_pred EEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccc----hHHHHHHHHHHH-----HhhccceEEE
Confidence 999999999999999999999999 8899999999999 9999 999999999999 8888999999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
+||||++++|++||+ ++|.+.++||+|||++.|...+..||+++++...+.||...++|+||||++|+++|+-.+
T Consensus 506 tSATm~a~kf~nfFg-----n~p~f~IpGRTyPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~ 580 (1042)
T KOG0924|consen 506 TSATMDAQKFSNFFG-----NCPQFTIPGRTYPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTC 580 (1042)
T ss_pred eeccccHHHHHHHhC-----CCceeeecCCccceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHH
Confidence 999999999999999 799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh-ccCCCC--cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 436 GILKQY-HNQRED--LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 436 ~~L~~~-~~~~~~--~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
..+... ...... .++.|+|+|+.||++-|.++|++.+.|.|||||||||||+|||||||.||||||+.|.+.|+++.
T Consensus 581 ~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~ 660 (1042)
T KOG0924|consen 581 DIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRI 660 (1042)
T ss_pred HHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeeccccc
Confidence 888732 222223 48999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhH-hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHH
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMY-NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYL 589 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~-~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l 589 (858)
|++.|+..|||++++.||+|||||+|+|.||||| ..| +.|.+ . +. |||+|+||+
T Consensus 661 G~D~L~~~pIS~AnA~QRaGRAGRt~pG~cYRlYTe~ay~~eml~-----s---tv---PEIqRTNl~------------ 717 (1042)
T KOG0924|consen 661 GMDALQIVPISQANADQRAGRAGRTGPGTCYRLYTEDAYKNEMLP-----S---TV---PEIQRTNLS------------ 717 (1042)
T ss_pred ccceeEEEechhccchhhccccCCCCCcceeeehhhhHHHhhccc-----C---CC---chhhhcchh------------
Confidence 9999999999999999999999999999999999 355 45555 5 77 999999999
Q ss_pred HhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCccc
Q psy2470 590 LEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLL 665 (858)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l 665 (858)
+++|+++++++.+...|+|+++ .+..++..|..+|++ + ..+. +| ++|+.|+++|+||.+
T Consensus 718 ---nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl-----~-~~g~---LT-----~lG~~MvefpLDP~l 780 (1042)
T KOG0924|consen 718 ---NVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGAL-----D-NTGQ---LT-----PLGRKMVEFPLDPPL 780 (1042)
T ss_pred ---hHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhcc-----c-cCCc---cc-----hhhHHhhhCCCCchH
Confidence 9999999999999999999998 788899999999999 6 5555 89 999999999999999
Q ss_pred ccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCc
Q psy2470 666 RKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGD 745 (858)
Q Consensus 666 ~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gD 745 (858)
++| +|. +..++|.+++++|++|||+..+|++|++.. ++++.+|.+|.+++||
T Consensus 781 sKm------------------------ll~--a~~~Gc~dEilsIvSmLSvp~VF~rpker~--eead~ar~Kf~~~~sD 832 (1042)
T KOG0924|consen 781 SKM------------------------LLM--AARMGCSDEILSIVSMLSVPAVFYRPKERE--EEADAAREKFQVPESD 832 (1042)
T ss_pred HHH------------------------HHH--HhccCcHHHHHHHHHHhcccceeeccccch--hhhhhHHhhhcCCCCc
Confidence 999 999 889999999999999999999999999888 8899999999999999
Q ss_pred hhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccC
Q psy2470 746 LLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYS 825 (858)
Q Consensus 746 hltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~ 825 (858)
|+|+||+|++|.+++++..||++|||+.++|+.|+++|.||.++|+.+++++.++ .+|+.|+||||+|||.|+|++.+.
T Consensus 833 hLTlLNVf~qw~~~~~~~~WCnd~~l~~kaL~~arevR~ql~~il~~l~~~l~S~-~dwdivrKCIcs~~fhn~Arlkg~ 911 (1042)
T KOG0924|consen 833 HLTLLNVFNQWRKNKYSSMWCNDHYLQVKALKKAREVRRQLLEILKQLKLPLISS-DDWDIVRKCICSAYFHNAARLKGI 911 (1042)
T ss_pred hhhHHHHHHHHHhcCCchhhhhhhhhhHHHHHHHHHHHHHHHHHHHHcCCCcccC-chHHHHHHHHHHHHHHHHHHhccC
Confidence 9999999999999999999999999999999999999999999999999999999 899999999999999999999999
Q ss_pred CcEEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 826 GVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 826 ~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
|.|.+++++..|++||||+|++.-.|+|||||
T Consensus 912 g~YV~~~tg~~c~lHPsS~L~g~y~p~Yivyh 943 (1042)
T KOG0924|consen 912 GEYVNLSTGIPCHLHPSSVLHGLYTPDYIVYH 943 (1042)
T ss_pred ceEEEccCCcceeecchHhhhcCCCCCeeeeh
Confidence 99999999999999999999987789999998
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-112 Score=936.96 Aligned_cols=555 Identities=34% Similarity=0.533 Sum_probs=517.3
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
-+-|.|+|||||| +|+||+++.-.| .+....+-|.+|+|++|++||.|||+|||+++|.+ ||
T Consensus 282 VLiI~GeTGSGKT-------TQiPQyL~EaGy--------tk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e---VG 343 (902)
T KOG0923|consen 282 VLIIVGETGSGKT-------TQIPQYLYEAGY--------TKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE---VG 343 (902)
T ss_pred EEEEEcCCCCCcc-------ccccHHHHhccc--------ccCCceEeecCcchHHHHHHHHHHHHHhCcccccc---cc
Confidence 3557899999999 999999965443 22222367899999999999999999999999999 99
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
|++||+++++..|.|.|||+|+||+ ++.+|+|.+|+|| |+|. +|.+.|++|++. +.||+++++
T Consensus 344 YsIRFEdcTSekTvlKYMTDGmLlREfL~epdLasYSViiiDEAHERTL~----TDILfgLvKDIa-----r~RpdLKll 414 (902)
T KOG0923|consen 344 YSIRFEDCTSEKTVLKYMTDGMLLREFLSEPDLASYSVIIVDEAHERTLH----TDILFGLVKDIA-----RFRPDLKLL 414 (902)
T ss_pred eEEEeccccCcceeeeeecchhHHHHHhccccccceeEEEeehhhhhhhh----hhHHHHHHHHHH-----hhCCcceEE
Confidence 9999999999999999999999999 9999999999999 9999 999999999999 899999999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHI 434 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l 434 (858)
++|||+|+++|+.||. ++|++.+||+.|||+++|...+..||+++++.++++||.+++.|+||||++|+++|+.+
T Consensus 415 IsSAT~DAekFS~fFD-----dapIF~iPGRRyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~ 489 (902)
T KOG0923|consen 415 ISSATMDAEKFSAFFD-----DAPIFRIPGRRYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETV 489 (902)
T ss_pred eeccccCHHHHHHhcc-----CCcEEeccCcccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHH
Confidence 9999999999999999 89999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhc-cCC-CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 435 IGILKQYH-NQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 435 ~~~L~~~~-~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+.|.+.. .++ ..+.+.++|+|++||++.|.++|++.++|.||||+||||||+||||+||.||||+|++|+..|+|++
T Consensus 490 ~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprt 569 (902)
T KOG0923|consen 490 KENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRT 569 (902)
T ss_pred HHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCc
Confidence 99998432 222 2457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHh-hhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHH
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYN-RLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYL 589 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~-~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l 589 (858)
||++|...|||++++.||+|||||+|||+||||| ..|+ .+.. . +. |||+|+||.
T Consensus 570 GmesL~v~piSKAsA~QRaGRAGRtgPGKCfRLYt~~aY~~eLE~-----~---t~---PEIqRtnL~------------ 626 (902)
T KOG0923|consen 570 GMESLLVTPISKASANQRAGRAGRTGPGKCFRLYTAWAYEHELEE-----M---TV---PEIQRTNLG------------ 626 (902)
T ss_pred CceeEEEeeechhhhhhhccccCCCCCCceEEeechhhhhhhhcc-----C---CC---cceeeccch------------
Confidence 9999999999999999999999999999999999 4453 3333 6 67 999999999
Q ss_pred HhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCccc
Q psy2470 590 LEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLL 665 (858)
Q Consensus 590 ~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l 665 (858)
+++|.++++|+++...|+|+++ ++..|++.|..||++ + ..+. +| .+|+.|+++|+||++
T Consensus 627 ---nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGAL-----n-~~Ge---LT-----k~GrrMaEfP~dPml 689 (902)
T KOG0923|consen 627 ---NVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGAL-----N-HLGE---LT-----KLGRRMAEFPVDPML 689 (902)
T ss_pred ---hHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhcc-----c-cccc---hh-----hhhhhhhhcCCCHHH
Confidence 9999999999999999999998 899999999999999 5 5555 89 999999999999999
Q ss_pred ccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccC-ccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 666 RKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQ-DIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 666 ~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~-~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
++| |+. +.+++|.++|++|+||||+. ++|+.|+++. ..++.+++.|....|
T Consensus 690 sKm------------------------i~a--s~ky~cs~EiitiaamlS~~~svfyrpk~~~--v~ad~a~~~f~~~~g 741 (902)
T KOG0923|consen 690 SKM------------------------IVA--SEKYKCSEEIITIAAMLSVGASVFYRPKDKQ--VHADNARKNFEEPVG 741 (902)
T ss_pred HhH------------------------Hhh--hccccchHHHHHHHHHHhcCchheecchhhh--hhhhhhhhccCCCCc
Confidence 999 998 88899999999999999985 6999998877 678888999999999
Q ss_pred chhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhcc
Q psy2470 745 DLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHY 824 (858)
Q Consensus 745 DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~ 824 (858)
||+++|++|+.|.+.+.+.+||.+||+.+++|++|++||.||..++.+.++...++..+...|++|+.+|||+|+|+...
T Consensus 742 Dhi~~L~vyn~w~es~~s~~wC~e~~iq~~sm~rardir~qL~gll~~v~~~~~s~~~~~~~irk~i~aGff~h~a~l~~ 821 (902)
T KOG0923|consen 742 DHIVLLNVYNQWKESKYSTQWCYENFIQYRSMKRARDIRDQLEGLLERVEIDLSSNQNDLDKIRKAITAGFFYHTAKLSK 821 (902)
T ss_pred chhhhhHHHHHHhhcchhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhccccccCChHHHHHHHHHHhccccccceeccC
Confidence 99999999999999999999999999999999999999999999999999988888778899999999999999999999
Q ss_pred CCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 825 SGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 825 ~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
+|+|+++.+.+.|++||.|+||. ..|.|||||.
T Consensus 822 ~g~y~tvk~~~tv~~hp~S~l~~-~~P~wvvy~e 854 (902)
T KOG0923|consen 822 GGHYRTVKHPQTVSIHPNSGLFE-QLPRWVVYHE 854 (902)
T ss_pred CCcceeeccCcceeecCcccccc-cCCceEEEee
Confidence 99999999999999999999997 4679999983
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-107 Score=870.70 Aligned_cols=545 Identities=31% Similarity=0.501 Sum_probs=501.3
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
+|+|||||| +++|++... +.-... ..+.+.+|+|++|+|+|+|||+||++.+|.+ |||.++
T Consensus 68 vGetgsGKt-------tQiPq~~~~--~~~~~~-------~~v~CTQprrvaamsva~RVadEMDv~lG~E---VGysIr 128 (699)
T KOG0925|consen 68 VGETGSGKT-------TQIPQFVLE--YELSHL-------TGVACTQPRRVAAMSVAQRVADEMDVTLGEE---VGYSIR 128 (699)
T ss_pred EecCCCCcc-------ccCcHHHHH--HHHhhc-------cceeecCchHHHHHHHHHHHHHHhccccchh---cccccc
Confidence 699999999 999987532 221111 3478999999999999999999999999999 999999
Q ss_pred ccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEec
Q psy2470 287 KGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSA 358 (858)
Q Consensus 287 ~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SA 358 (858)
|+++.+.+|-+.|||+|+|++ .++|+.|.+|.|| |++. +|.++|++|++. ..|+++|+|+|||
T Consensus 129 fEdC~~~~T~Lky~tDgmLlrEams~p~l~~y~viiLDeahERtlA----TDiLmGllk~v~-----~~rpdLk~vvmSa 199 (699)
T KOG0925|consen 129 FEDCTSPNTLLKYCTDGMLLREAMSDPLLGRYGVIILDEAHERTLA----TDILMGLLKEVV-----RNRPDLKLVVMSA 199 (699)
T ss_pred ccccCChhHHHHHhcchHHHHHHhhCcccccccEEEechhhhhhHH----HHHHHHHHHHHH-----hhCCCceEEEeec
Confidence 999999999999999999999 9999999999999 9999 999999999999 7889999999999
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|+++.+|.+||+ ++|++.|+| ++||+++|...+.+||++++++++++||..+++|+||||+++.+||+.+++.+
T Consensus 200 tl~a~Kfq~yf~-----n~Pll~vpg-~~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i 273 (699)
T KOG0925|consen 200 TLDAEKFQRYFG-----NAPLLAVPG-THPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKI 273 (699)
T ss_pred ccchHHHHHHhC-----CCCeeecCC-CCceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHH
Confidence 999999999999 899999999 89999999999999999999999999999999999999999999999999999
Q ss_pred HH-hccCC-CCcceEEEeccCCCCHHHHHHhcCCCCCC-----cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 439 KQ-YHNQR-EDLKLLILPMHGSLPNNEQIKVFRPTPRA-----MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 439 ~~-~~~~~-~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-----~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ ..++. +...++|+||| +.+|.++|++.+.. .|||+|+||+||++++|++|.||||.|+.|+++||||
T Consensus 274 ~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVvstniaetsltidgiv~VIDpGf~kqkVYNPR 349 (699)
T KOG0925|consen 274 SREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVVSTNIAETSLTIDGIVFVIDPGFSKQKVYNPR 349 (699)
T ss_pred HHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEEEecchheeeeeccEEEEecCchhhhcccCcc
Confidence 83 32222 35578999999 77788999887643 4999999999999999999999999999999999999
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh-hh-Hh-hhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN-FM-YN-RLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~-~~-~~-~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++.+++...|||++++.||+|||||+.+|+||||| ++ |+ .|.+ . +. |||+|+||+
T Consensus 350 IRvesllv~PISkasA~qR~gragrt~pGkcfrLYte~~~~~em~~-----~---ty---peilrsNL~----------- 407 (699)
T KOG0925|consen 350 IRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFEKEMQP-----Q---TY---PEILRSNLS----------- 407 (699)
T ss_pred eeeeeeeeccchHhHHHHHhhhccCCCCCceEEeecHHhhhhcCCC-----C---Cc---HHHHHHhhH-----------
Confidence 99999999999999999999999999999999999 44 43 4666 5 55 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcc
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPL 664 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~ 664 (858)
+++|++|.+++.++..++|+++ ++..|+|.|..++++ + ++++ +| ++|..|+++|+||.
T Consensus 408 ----s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaL-----d-DdGn---LT-----~lG~imSEFPLdPq 469 (699)
T KOG0925|consen 408 ----STVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAAL-----D-DDGN---LT-----SLGEIMSEFPLDPQ 469 (699)
T ss_pred ----HHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhh-----C-CCcc---cc-----hhhhhhhcCCCChH
Confidence 9999999999999999999988 889999999999999 7 7777 89 99999999999999
Q ss_pred cccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 665 LRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 665 l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
+++| ++. +++|.|+.++++|+|||++.++|++|.+.. ++.|+.+++.|+|..|
T Consensus 470 LAkm------------------------Li~--S~efnCsnEiLsisAMLsvPncFvRp~~~a-~kaAdeak~~faH~dG 522 (699)
T KOG0925|consen 470 LAKM------------------------LIG--SCEFNCSNEILSISAMLSVPNCFVRPTSSA-SKAADEAKETFAHIDG 522 (699)
T ss_pred HHHH------------------------Hhh--cCCCCchHHHHHHHhcccCCccccCCChhH-HHHHHHHHHHhccCCc
Confidence 9999 999 999999999999999999999999998433 2678888999999999
Q ss_pred chhhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CChHHHHHHHHhcccccch
Q psy2470 745 DLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSP----RNTNAVLKCLTNGFFSNAA 820 (858)
Q Consensus 745 DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~k~l~aG~~~nvA 820 (858)
||+|+||+|.+|++++...+||++||||+++|+.|.++|.||.++|++++++..+.+ .+..+|+|||++|||+|||
T Consensus 523 DHlTLlnVYhAfkq~~~~~~WC~~~flN~ral~~Ad~vR~qL~rim~R~~L~~~st~F~S~~y~~nirKALvsgyFmqVA 602 (699)
T KOG0925|consen 523 DHLTLLNVYHAFKQNNEDPNWCYDNFLNYRALKSADNVRQQLLRIMDRFNLPLCSTDFGSRDYYVNIRKALVSGYFMQVA 602 (699)
T ss_pred chHHHHHHHHHHHhcCCChhHHHHhcccHHHHHhHHHHHHHHHHHHHHhcCcccCCCCCChhHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999876533 4577999999999999999
Q ss_pred hhccCCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 821 YLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 821 ~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
+...+|+|.|+++++.|++|||+||. .+|+||+||.
T Consensus 603 ~~~~~~~Ylt~kdnqvvqLhps~~l~--~~PeWVlyne 638 (699)
T KOG0925|consen 603 HLERGGHYLTVKDNQVVQLHPSTCLD--HKPEWVLYNE 638 (699)
T ss_pred hhccCCceEEEecCceEEeccccccC--CCCCeEEEee
Confidence 99888899999999999999999997 5899999984
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-95 Score=888.34 Aligned_cols=546 Identities=26% Similarity=0.373 Sum_probs=484.5
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|++.... |.|.. ..+.|.+|+|++|+++|+||++|++..+|.. |||.
T Consensus 93 iI~GeTGSGKT-------TqlPq~lle~--------g~g~~-g~I~~TQPRRlAArsLA~RVA~El~~~lG~~---VGY~ 153 (1294)
T PRK11131 93 IVAGETGSGKT-------TQLPKICLEL--------GRGVK-GLIGHTQPRRLAARTVANRIAEELETELGGC---VGYK 153 (1294)
T ss_pred EEECCCCCCHH-------HHHHHHHHHc--------CCCCC-CceeeCCCcHHHHHHHHHHHHHHHhhhhcce---ecee
Confidence 35699999999 7899776432 22221 2467889999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
++++++.+..|+|+|||||+|++ ++.++.|++|++| |+++ +||++++++.+. ..++++|+|+|
T Consensus 154 vrf~~~~s~~t~I~v~TpG~LL~~l~~d~~Ls~~~~IIIDEAHERsLn----~DfLLg~Lk~lL-----~~rpdlKvILm 224 (1294)
T PRK11131 154 VRFNDQVSDNTMVKLMTDGILLAEIQQDRLLMQYDTIIIDEAHERSLN----IDFILGYLKELL-----PRRPDLKVIIT 224 (1294)
T ss_pred ecCccccCCCCCEEEEChHHHHHHHhcCCccccCcEEEecCccccccc----cchHHHHHHHhh-----hcCCCceEEEe
Confidence 99999999899999999999999 8888999999988 8999 999999998877 56689999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV------VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
|||++.+.|+++|+ ++|++.++|+.+||+++|..... .+++...+..+..++ .+++|+||||+||+++
T Consensus 225 SATid~e~fs~~F~-----~apvI~V~Gr~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~-~~~~GdILVFLpg~~E 298 (1294)
T PRK11131 225 SATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG-REGPGDILIFMSGERE 298 (1294)
T ss_pred eCCCCHHHHHHHcC-----CCCEEEEcCccccceEEEeecccccchhhHHHHHHHHHHHHHHh-cCCCCCEEEEcCCHHH
Confidence 99999999999998 68899999999999999987543 233444444444443 4567999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
|+.+++.|++.. .+.+.+++|||+|++++|.++|++ .|.+||||||||||||||||+|+||||+|++|.+.||+
T Consensus 299 Ie~lae~L~~~~----~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~ 372 (1294)
T PRK11131 299 IRDTADALNKLN----LRHTEILPLYARLSNSEQNRVFQS--HSGRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSY 372 (1294)
T ss_pred HHHHHHHHHhcC----CCcceEeecccCCCHHHHHHHhcc--cCCeeEEEeccHHhhccccCcceEEEECCCcccccccc
Confidence 999999998651 124678999999999999999996 47899999999999999999999999999999999999
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++|++.+...|+|+++|.||+|||||+++|+||+|| ++|+.+++ + +. |||+|++|.
T Consensus 373 ~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~d~~~~~~-----~---~~---PEIlR~~L~----------- 430 (1294)
T PRK11131 373 RTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSEDDFLSRPE-----F---TD---PEILRTNLA----------- 430 (1294)
T ss_pred ccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHHHHHhhhc-----c---cC---CccccCCHH-----------
Confidence 999999999999999999999999999999999999 77888888 7 77 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCC--CcccCccceecchhhHHHhcccC
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDC--TTEDVTKIKYMTEGILMREMMTD 662 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~--~~~~~T~i~~~~~G~lls~L~~d 662 (858)
+++|+++++++.++..|+|+++ ++..|++.|..+|++ + +++ ....+| ++|+.|++||+|
T Consensus 431 ----~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAl-----d-~~~~~~~~~LT-----~lG~~la~LPld 495 (1294)
T PRK11131 431 ----SVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAI-----T-TDEQASAYKLT-----PLGRQLAQLPVD 495 (1294)
T ss_pred ----HHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCC-----C-ccccCCCccCc-----HHHHHHHhCCCC
Confidence 9999999999999999999987 899999999999999 5 221 122478 999999999999
Q ss_pred cccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccC
Q psy2470 663 PLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVE 742 (858)
Q Consensus 663 p~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~ 742 (858)
|.+++| ++. +..++|++++++|+|+||++++|..|.+++ .+++..|++|.+.
T Consensus 496 Prlakm------------------------Ll~--a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~--~~a~~~~~~f~~~ 547 (1294)
T PRK11131 496 PRLARM------------------------VLE--AQKHGCVREVMIITSALSIQDPRERPMDKQ--QASDEKHRRFADK 547 (1294)
T ss_pred hHHHHH------------------------HHH--hhhcCCHHHHHHHHHHHcCCCcccCCchhH--HHHHHHHHhhCCC
Confidence 999999 998 889999999999999999999999998776 6788889999999
Q ss_pred CCchhhHHHHHHHHHHccc------hHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccc
Q psy2470 743 QGDLLTLLNIFKFYEKQEN------KKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFF 816 (858)
Q Consensus 743 ~gDhltlLnif~~w~~~~~------~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~ 816 (858)
.|||+++||+|+.|.+..+ .++||++||||+++|++|.++|.||.++++++|++.+++..+++.|++|||+|||
T Consensus 548 ~sD~lt~ln~~~~~~~~~~~~s~~~~~~~C~~~~L~~~~l~e~~~i~~QL~~~~~~~g~~~~~~~~~~~~i~~all~G~~ 627 (1294)
T PRK11131 548 ESDFLAFVNLWNYLQEQQKALSSNQFRRLCRTDYLNYLRVREWQDIYTQLRQVVKELGIPVNSEPAEYREIHTALLTGLL 627 (1294)
T ss_pred CCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHcCCCCCCCcccHHHHHHHHHhhcH
Confidence 9999999999999976422 3689999999999999999999999999999999998888899999999999999
Q ss_pred ccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 817 SNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 817 ~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
+|||+++.+++ |.+.+ +..++|||+|+|++ ++|+||||+
T Consensus 628 ~nva~~~~~~~~y~~~~-~~~~~ihP~S~L~~-~~p~wvv~~ 667 (1294)
T PRK11131 628 SHIGMKDAEKQEYTGAR-NARFSIFPGSGLFK-KPPKWVMVA 667 (1294)
T ss_pred HHHeeccCCCCeEEccC-CcEEEEcCCccccC-CCCCEEEEE
Confidence 99999887654 87776 78899999999997 589999997
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-92 Score=859.34 Aligned_cols=547 Identities=27% Similarity=0.380 Sum_probs=486.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|++.... |.|. ...++|.+|+|++|.++|+++++++|..+|.. |||.
T Consensus 86 ii~g~TGSGKT-------TqlPq~lle~--------~~~~-~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~---VGY~ 146 (1283)
T TIGR01967 86 IIAGETGSGKT-------TQLPKICLEL--------GRGS-HGLIGHTQPRRLAARTVAQRIAEELGTPLGEK---VGYK 146 (1283)
T ss_pred EEeCCCCCCcH-------HHHHHHHHHc--------CCCC-CceEecCCccHHHHHHHHHHHHHHhCCCcceE---EeeE
Confidence 45799999999 8899887432 2222 22468899999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|++++.+..|+|+|||||+|++ ++.|+.|++|++| |+++ +|+++++++.+. ..++++|+|+|
T Consensus 147 vR~~~~~s~~T~I~~~TdGiLLr~l~~d~~L~~~~~IIIDEaHERsL~----~D~LL~lLk~il-----~~rpdLKlIlm 217 (1283)
T TIGR01967 147 VRFHDQVSSNTLVKLMTDGILLAETQQDRFLSRYDTIIIDEAHERSLN----IDFLLGYLKQLL-----PRRPDLKIIIT 217 (1283)
T ss_pred EcCCcccCCCceeeeccccHHHHHhhhCcccccCcEEEEcCcchhhcc----chhHHHHHHHHH-----hhCCCCeEEEE
Confidence 99999999999999999999999 8889999999988 8999 999999999887 66789999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc------cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV------VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~------~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
|||++.+.|++||+ ++|++.++|+.|||+++|..... .++.+.....+..++.. .+|+||||+||+++
T Consensus 218 SATld~~~fa~~F~-----~apvI~V~Gr~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~~~-~~GdILVFLpg~~E 291 (1283)
T TIGR01967 218 SATIDPERFSRHFN-----NAPIIEVSGRTYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELFAE-GPGDILIFLPGERE 291 (1283)
T ss_pred eCCcCHHHHHHHhc-----CCCEEEECCCcccceeEEecccccccchhhhHHHHHHHHHHHHHhh-CCCCEEEeCCCHHH
Confidence 99999999999998 68999999999999999976432 13444455555555543 57999999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
|+.+++.|++.. .+++.+.+|||+|++++|.++|+++ +.+||||||||||||||||||+||||+|++|.++||+
T Consensus 292 I~~l~~~L~~~~----~~~~~VlpLhg~Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~ 365 (1283)
T TIGR01967 292 IRDAAEILRKRN----LRHTEILPLYARLSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSY 365 (1283)
T ss_pred HHHHHHHHHhcC----CCCcEEEeccCCCCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCcccccccc
Confidence 999999998641 1367899999999999999999876 3589999999999999999999999999999999999
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHH
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQY 588 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~ 588 (858)
++|++.+.+.|||+++|.||+|||||+|+|+||+|| ++|+.+++ + +. |||+|++|+
T Consensus 366 ~~~~~~L~~~~ISkasa~QRaGRAGR~~~G~cyRLyte~~~~~~~~-----~---~~---PEIlR~~L~----------- 423 (1283)
T TIGR01967 366 RTKVQRLPIEPISQASANQRKGRCGRVAPGICIRLYSEEDFNSRPE-----F---TD---PEILRTNLA----------- 423 (1283)
T ss_pred ccCccccCCccCCHHHHHHHhhhhCCCCCceEEEecCHHHHHhhhh-----c---cC---cccccccHH-----------
Confidence 999999999999999999999999999999999999 77888888 7 66 999999999
Q ss_pred HHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcc
Q psy2470 589 LLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPL 664 (858)
Q Consensus 589 l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~ 664 (858)
+++|+++.+++.++..|+|+++ ++..|++.|..+|++ + +++....+| ++|+.|++||+||.
T Consensus 424 ----~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAl-----d-~~~~~~~LT-----~lGr~ma~LPldPr 488 (1283)
T TIGR01967 424 ----SVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGAL-----D-DDEAEPQLT-----PIGRQLAQLPVDPR 488 (1283)
T ss_pred ----HHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCC-----C-CCCCCcccc-----HHHHHHhhcCCChH
Confidence 9999999999999999999987 899999999999999 6 444212378 99999999999999
Q ss_pred cccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCC
Q psy2470 665 LRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQG 744 (858)
Q Consensus 665 l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~g 744 (858)
+++| ++. +..++|.+++++|+|+|+++++|..|.+++ .+++..+++|.+..|
T Consensus 489 larm------------------------Ll~--a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~--~~a~~~~~~f~~~~s 540 (1283)
T TIGR01967 489 LARM------------------------LLE--AHRLGCLQEVLIIASALSIQDPRERPMEKQ--QAADQAHARFKDPRS 540 (1283)
T ss_pred HHHH------------------------HHH--hhhcCCHHHHHHHHHHHcCCCcCCCcchhH--HHHHHHHHHhcCCCC
Confidence 9999 998 889999999999999999999999988776 778888999999999
Q ss_pred chhhHHHHHHHHHHcc------chHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 745 DLLTLLNIFKFYEKQE------NKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 745 DhltlLnif~~w~~~~------~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
||++++|+|+.|.+.. ..++||++||||+.+|++|.++++||.++++++|++.+++..+.+.|++||++||++|
T Consensus 541 D~l~~L~~~~~~~~~~~~~~~~~~~~~C~~~fL~~~~l~~~~~i~~QL~~~~~~~~~~~~~~~~~~~~i~~~l~~g~~~~ 620 (1283)
T TIGR01967 541 DFLSRVNLWRHIEEQRQALSANQFRNACRKQYLNYLRVREWQDIYRQLTQVVKELGLKLNEEPADYDAIHKALLSGLLSQ 620 (1283)
T ss_pred CHHHHHHHHHHHHHhhhhccchHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHHHcCCCcCCCCccHHHHHHHHHHhhHHH
Confidence 9999999999997642 2368999999999999999999999999999999887776677888999999999999
Q ss_pred chhhccCCcEEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 819 AAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 819 vA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
||++..++.|.+.. +..++|||+|+|++ ++|+||||+.
T Consensus 621 iA~~~~~~~y~~~~-g~~~~ihP~S~L~~-~~p~wvv~~e 658 (1283)
T TIGR01967 621 IGMKDEKHEYDGAR-GRKFHIFPGSPLFK-KPPKWVMAAE 658 (1283)
T ss_pred HheeCCCCcEEecC-CcEEEECCCccccC-CCCCEEEEee
Confidence 99988777899987 57899999999997 5789999974
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-90 Score=816.54 Aligned_cols=554 Identities=29% Similarity=0.391 Sum_probs=492.7
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
.+-+.|+|||||| +++|+++....+ +.. ..+.+++|+|++|+++|+|+++|+|.++|.. ||
T Consensus 67 vvii~getGsGKT-------TqlP~~lle~g~--------~~~-g~I~~tQPRRlAArsvA~RvAeel~~~~G~~---VG 127 (845)
T COG1643 67 VVIIVGETGSGKT-------TQLPQFLLEEGL--------GIA-GKIGCTQPRRLAARSVAERVAEELGEKLGET---VG 127 (845)
T ss_pred EEEEeCCCCCChH-------HHHHHHHHhhhc--------ccC-CeEEecCchHHHHHHHHHHHHHHhCCCcCce---ee
Confidence 4456799999999 999988865443 111 1368899999999999999999999999999 99
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
|.+||++..+..|+|.|||+|.|++ ++.|+.|++|++| |+++ +|+++|+++++.. ..|+++|+|
T Consensus 128 Y~iRfe~~~s~~Trik~mTdGiLlrei~~D~~Ls~ys~vIiDEaHERSl~----tDilLgllk~~~~----~rr~DLKiI 199 (845)
T COG1643 128 YSIRFESKVSPRTRIKVMTDGILLREIQNDPLLSGYSVVIIDEAHERSLN----TDILLGLLKDLLA----RRRDDLKLI 199 (845)
T ss_pred EEEEeeccCCCCceeEEeccHHHHHHHhhCcccccCCEEEEcchhhhhHH----HHHHHHHHHHHHh----hcCCCceEE
Confidence 9999999999999999999999999 9999999999998 9999 9999999999772 445689999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccch-HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNY-VQGVVDTAIKIHESMPVGDILAFVIGLEQIEH 433 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~-~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~ 433 (858)
+||||+|.++|++||+ ++|++.++|++|||+++|.+....++ ++..+....+++..++.|+||||+||.+||+.
T Consensus 200 imSATld~~rfs~~f~-----~apvi~i~GR~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~ 274 (845)
T COG1643 200 IMSATLDAERFSAYFG-----NAPVIEIEGRTYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVFLPGQREIER 274 (845)
T ss_pred EEecccCHHHHHHHcC-----CCCEEEecCCccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEECCcHHHHHH
Confidence 9999999999999999 79999999999999999988888888 88888888899989999999999999999999
Q ss_pred HHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCC
Q psy2470 434 IIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTL 513 (858)
Q Consensus 434 l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g 513 (858)
+++.|++. .+ .+.+.++||||.|+.++|.++|++.+.|+||||+||||||+|||||||+||||+|+.|++.||+++|
T Consensus 275 ~~~~L~~~-~l--~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g 351 (845)
T COG1643 275 TAEWLEKA-EL--GDDLEILPLYGALSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTG 351 (845)
T ss_pred HHHHHHhc-cc--cCCcEEeeccccCCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccC
Confidence 99999972 11 1379999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHh
Q psy2470 514 TNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLE 591 (858)
Q Consensus 514 ~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~ 591 (858)
+..|.+.|||++++.||+|||||+++|+||||| ++|..|++ + +. |||+|+||+
T Consensus 352 ~~~L~~~~ISqAsA~QRaGRAGR~~pGicyRLyse~~~~~~~~-----~---t~---PEIlrtdLs-------------- 406 (845)
T COG1643 352 LTRLETEPISKASADQRAGRAGRTGPGICYRLYSEEDFLAFPE-----F---TL---PEILRTDLS-------------- 406 (845)
T ss_pred ceeeeEEEechhhhhhhccccccCCCceEEEecCHHHHHhccc-----C---CC---hhhhhcchH--------------
Confidence 999999999999999999999999999999999 68888888 7 77 999999999
Q ss_pred hhHhHhHhhhCCC-CCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccc
Q psy2470 592 AGWCYDTKLIGIT-EPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLR 666 (858)
Q Consensus 592 ~~~~l~~~~~~~~-~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~ 666 (858)
+++|+++.+|++ ++..|+|+++ ++..|++.|..+|++ + +++. +| ++|+.|+.||+||+++
T Consensus 407 -~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAl-----d-~~g~---LT-----~lG~~ms~lpldprLA 471 (845)
T COG1643 407 -GLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGAL-----D-DSGK---LT-----PLGKQMSLLPLDPRLA 471 (845)
T ss_pred -HHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCc-----C-CCCC---CC-----HHHHHHHhCCCChHHH
Confidence 999999999996 9999999998 999999999999999 7 5555 88 9999999999999999
Q ss_pred cceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCc---cccCCCChhhH-HHHHHHH-hcccc
Q psy2470 667 KYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQD---IFIKPSSGALS-LKARVLR-RNFEV 741 (858)
Q Consensus 667 ~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~---~f~~~~~~~~~-~~~~~~~-~~f~~ 741 (858)
+| ++. +..++|..++++|+|+|++++ .|+.+.+.+.. .....++ .++..
T Consensus 472 ~m------------------------Ll~--a~~~g~~~e~~~Ias~Ls~~~~~s~~~~~~~~~~~~~~~~~~~~l~~~~ 525 (845)
T COG1643 472 RM------------------------LLT--APEGGCLGEAATIASMLSEQDRESDFSRDVKLRKQRTAQDLLKRLKRRN 525 (845)
T ss_pred HH------------------------HHh--ccccCcHHHHHHHHHhhccCCCcchhccccchhhHHHHHHHHHHHHhcc
Confidence 99 988 778999999999999999998 68877666531 1222222 33444
Q ss_pred ---CCCchhhHHHHHHHHHHcc------chHHHHHhccCCHHHHHHHHHHHHHHHHHHHh-cCCCCCCCCC---------
Q psy2470 742 ---EQGDLLTLLNIFKFYEKQE------NKKQFCHKYFFNYKVLKRAAELKNQMILLLKK-SSIPLVTSPR--------- 802 (858)
Q Consensus 742 ---~~gDhltlLnif~~w~~~~------~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~-~~~~~~~~~~--------- 802 (858)
+.|||++++++|..|...+ ....||+.++++.++|.++..++.|+...+.+ .+........
T Consensus 526 ~~~~~~d~~~ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 605 (845)
T COG1643 526 AADPRGDHLLLLEAFPDRIARKRAKGEYLRANGCRAMLFPTKALSRAPWIIAALLVQTSALAGRILAAAEIDEDEWAAQH 605 (845)
T ss_pred CCCcchHHHHHHHHHHHHHHhhhccchhhHhcChhhhcCChhHHHhhHHHHHHHHHhhhccccchhhhcccCcchhhhhh
Confidence 6799999999999998877 56799999999999999999999999998887 5543322221
Q ss_pred ---------ChHHHHHHHHhcccccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 803 ---------NTNAVLKCLTNGFFSNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 803 ---------~~~~i~k~l~aG~~~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
.|+.+.+++++|++.|+++....+. |.++.++..+++||+|+-.....++|++|+
T Consensus 606 ~~~~~~~~~~~d~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~~~~~~~~~~~~ 670 (845)
T COG1643 606 LPEHCYSEPIWDDIRGALAAGRKLNIAQLQLDGRPYVTLSDNTPVFAHPSSVRLGLVLLEWIKYA 670 (845)
T ss_pred hhhhhccchhHHHHhhhhhhheecceeeeeccccccccCCCCceeEecchhHhhcccCcchHHHH
Confidence 3578999999999999999887776 999999999999999963334688999986
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-85 Score=729.92 Aligned_cols=563 Identities=25% Similarity=0.346 Sum_probs=485.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-|.|+|||||| +|+||++|..+|... +. .+ ...+=|.+|+|+||...|+||+.|+|. .|.+ |||
T Consensus 274 vIIcGeTGsGKT-------TQvPQFLYEAGf~s~-~~--~~-~gmIGITqPRRVAaiamAkRVa~EL~~-~~~e---VsY 338 (1172)
T KOG0926|consen 274 VIICGETGSGKT-------TQVPQFLYEAGFASE-QS--SS-PGMIGITQPRRVAAIAMAKRVAFELGV-LGSE---VSY 338 (1172)
T ss_pred EEEecCCCCCcc-------ccchHHHHHcccCCc-cC--CC-CCeeeecCchHHHHHHHHHHHHHHhcc-Cccc---eeE
Confidence 346899999999 999999987665432 11 11 123567999999999999999999998 9999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCC------C
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKR------T 349 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~------~ 349 (858)
++|++....+.|.|.|||+|.||+ +..|..|.+|++| |+++ +|.+.|++..+. .|+.... +
T Consensus 339 qIRfd~ti~e~T~IkFMTDGVLLrEi~~DflL~kYSvIIlDEAHERSvn----TDILiGmLSRiV-~LR~k~~ke~~~~k 413 (1172)
T KOG0926|consen 339 QIRFDGTIGEDTSIKFMTDGVLLREIENDFLLTKYSVIILDEAHERSVN----TDILIGMLSRIV-PLRQKYYKEQCQIK 413 (1172)
T ss_pred EEEeccccCCCceeEEecchHHHHHHHHhHhhhhceeEEechhhhccch----HHHHHHHHHHHH-HHHHHHhhhhcccC
Confidence 999999999999999999999999 9999999999999 9999 999999999887 3332222 3
Q ss_pred CceEEEEecccCHHHHHH---HhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAEEICQ---FYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~---~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
.+++|+||||+-+..|.+ .|.. .||++.|+.|+|||.++|......||+..+.+..+.||+..|+|.||||++
T Consensus 414 pLKLIIMSATLRVsDFtenk~LFpi----~pPlikVdARQfPVsIHF~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvT 489 (1172)
T KOG0926|consen 414 PLKLIIMSATLRVSDFTENKRLFPI----PPPLIKVDARQFPVSIHFNKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVT 489 (1172)
T ss_pred ceeEEEEeeeEEecccccCceecCC----CCceeeeecccCceEEEeccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEe
Confidence 689999999998888873 3432 578999999999999999999989999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhcc--CC------------C----------------------------------------------
Q psy2470 427 GLEQIEHIIGILKQYHN--QR------------E---------------------------------------------- 446 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~--~~------------~---------------------------------------------- 446 (858)
|+++|+.+++.|++... +. +
T Consensus 490 GQqEV~qL~~kLRK~~p~~f~~~k~~k~~k~~~e~k~~~s~~~~~~k~~dfe~Ed~~~~~ed~d~~~~~~~~~~~raa~~ 569 (1172)
T KOG0926|consen 490 GQQEVDQLCEKLRKRFPESFGGVKMKKNVKAFKELKENPSDIGDSNKTDDFEEEDMYESDEDIDQELVDSGFASLRAAFN 569 (1172)
T ss_pred ChHHHHHHHHHHHhhCccccccchhhhhhhhccccccchhhhccCcccccchhcccccchhhhhhhhhcccchhhhhhhh
Confidence 99999999999985421 00 0
Q ss_pred --------------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 447 --------------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 447 --------------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
...+.|+||||-|+.++|.+||+..+.|.|-+||||||||+|||||+|
T Consensus 570 ~~~De~~~~nge~e~d~~e~~~E~~~~~~~~~~~pLyvLPLYSLLs~~~Q~RVF~~~p~g~RLcVVaTNVAETSLTIPgI 649 (1172)
T KOG0926|consen 570 ALADENGSVNGEPEKDESEEGQEAEQGKGKFSPGPLYVLPLYSLLSTEKQMRVFDEVPKGERLCVVATNVAETSLTIPGI 649 (1172)
T ss_pred ccccccccccCCcccchhhhchhhhhccCCCCCCceEEeehhhhcCHHHhhhhccCCCCCceEEEEeccchhcccccCCe
Confidence 014679999999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHh-hhhhhhhccCCCCCCCCCCCc
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYN-RLFIHFCVSRNIPTIPNDPKD 571 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~-~l~~~~~~~~~~p~~~~~Pei 571 (858)
.||||||+.|++.||..+|++++...|||++++.||+|||||+|+|+||||| .-|+ .+.+ + +. |||
T Consensus 650 kYVVD~Gr~K~R~Yd~~TGV~~FeV~wiSkASadQRAGRAGRtgpGHcYRLYSSAVf~~~Fe~-----f---S~---PEI 718 (1172)
T KOG0926|consen 650 KYVVDCGRVKERLYDSKTGVSSFEVDWISKASADQRAGRAGRTGPGHCYRLYSSAVFSNDFEE-----F---SL---PEI 718 (1172)
T ss_pred eEEEeccchhhhccccccCceeEEEEeeeccccchhccccCCCCCCceeehhhhHHhhcchhh-----h---cc---HHH
Confidence 9999999999999999999999999999999999999999999999999999 5665 4555 6 66 999
Q ss_pred cccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccc
Q psy2470 572 VKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKI 647 (858)
Q Consensus 572 ~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i 647 (858)
++.+.+ +++|+++++++.....|+|.++ +++.|+..|..||++ + +++. +|
T Consensus 719 lk~Pve---------------~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgAL-----d-~~g~---lT-- 772 (1172)
T KOG0926|consen 719 LKKPVE---------------SLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGAL-----D-SNGG---LT-- 772 (1172)
T ss_pred hhCcHH---------------HHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccc-----c-ccCC---cc--
Confidence 999999 9999999999999999999887 889999999999999 7 5555 88
Q ss_pred eecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCCh-
Q psy2470 648 KYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSG- 726 (858)
Q Consensus 648 ~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~- 726 (858)
++|..|+.+|+.|+.++| |+. +...+|..-++.++++||+.++|+.....
T Consensus 773 ---~lGk~mS~FPlsPrfsKm------------------------L~~--~~Q~~~lpy~i~lvsaLsv~e~~i~~~~ll 823 (1172)
T KOG0926|consen 773 ---KLGKAMSLFPLSPRFSKM------------------------LAT--SDQHNLLPYNIALVSALSVYEVLIVAASLL 823 (1172)
T ss_pred ---cccchhcccccChhHHHH------------------------HHH--HHhhcchhHHHHHHHHHhccchhhhhhhcc
Confidence 999999999999999999 888 88889999999999999999887652211
Q ss_pred ----------hh-------------------HHHHHHHHhccccCCCchhhHHHHHHHHHHccchHHHHHhccCCHHHHH
Q psy2470 727 ----------AL-------------------SLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENKKQFCHKYFFNYKVLK 777 (858)
Q Consensus 727 ----------~~-------------------~~~~~~~~~~f~~~~gDhltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~ 777 (858)
.. +....+++.+|....+|-++++.+..++...++...||.+|||..++|.
T Consensus 824 ~n~~~r~~~~eE~d~~~~de~~~d~~~K~~rr~~~~aa~~rf~~l~sd~l~Ll~Av~a~ey~~~~~rfc~~ngLr~Kam~ 903 (1172)
T KOG0926|consen 824 PNPLIREFEPEEKDLIKDDETVEDKELKKRRREKSKAARSRFSNLDSDALVLLSAVSAAEYAENGMRFCEANGLRLKAME 903 (1172)
T ss_pred cccccccCCcchhhccccccccccHHHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhhhcchhHHhcchHHHHHH
Confidence 00 0112234666777789999999999999988888889999999999999
Q ss_pred HHHHHHHHHHHHHHhcCC-------CCCCCC---CChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCC
Q psy2470 778 RAAELKNQMILLLKKSSI-------PLVTSP---RNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYT 847 (858)
Q Consensus 778 ~a~~ir~QL~~~l~~~~~-------~~~~~~---~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~ 847 (858)
+++++|+||..+++..++ ...... .....+++.|||||..+||++..-..|-+..-+.+++|||+|+|++
T Consensus 904 Ev~KLR~QL~~lv~~~~i~~v~~~~d~~l~ppt~~q~~lLrQ~i~Ag~~DrVArk~~~~~y~~~~i~~~~fl~~~svl~~ 983 (1172)
T KOG0926|consen 904 EVRKLRKQLTNLVNHGNIQDVEKSWDLTLKPPTDTQAKLLRQMICAGFADRVARKVDATEYDAAKIQEPVFLHRWSVLIN 983 (1172)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHhcccCCCCCchHHHHHHHHHHHHHHHHHHHHhccccccchhhhcCceeeeehhhhhc
Confidence 999999999999986543 221111 1233577899999999999976666688888788999999999997
Q ss_pred CCCCCeEEec
Q psy2470 848 LQQPQCTHLE 857 (858)
Q Consensus 848 ~~~P~wvvy~ 857 (858)
+.|+||+|-
T Consensus 984 -~ape~viY~ 992 (1172)
T KOG0926|consen 984 -SAPELVIYQ 992 (1172)
T ss_pred -cCccceehh
Confidence 589999994
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-84 Score=763.87 Aligned_cols=554 Identities=26% Similarity=0.387 Sum_probs=477.7
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-|.|+||+||| +++||+...-.+ +.| ..+.++|.+|+|.+|.++|+||++|+|...|.. |||+
T Consensus 192 vIsGeTGcGKT-------TQvpQfiLd~~~----~~~---~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~---VGYq 254 (924)
T KOG0920|consen 192 VISGETGCGKT-------TQVPQFILDEAI----ESG---AACNIICTQPRRISAISVAERVAKERGESLGEE---VGYQ 254 (924)
T ss_pred EEeCCCCCCch-------hhhhHHHHHHHH----hcC---CCCeEEecCCchHHHHHHHHHHHHHhccccCCe---eeEE
Confidence 46799999999 999988743221 222 445689999999999999999999999999988 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|.++..+..|.+.|||.|.||+ ++.++.+.++++| |+++ +||++.++|.+. ..+|++|+|||
T Consensus 255 vrl~~~~s~~t~L~fcTtGvLLr~L~~~~~l~~vthiivDEVHER~i~----~DflLi~lk~lL-----~~~p~LkvILM 325 (924)
T KOG0920|consen 255 VRLESKRSRETRLLFCTTGVLLRRLQSDPTLSGVTHIIVDEVHERSIN----TDFLLILLKDLL-----PRNPDLKVILM 325 (924)
T ss_pred EeeecccCCceeEEEecHHHHHHHhccCcccccCceeeeeeEEEccCC----cccHHHHHHHHh-----hhCCCceEEEe
Confidence 99999999889999999999999 8999999999988 9999 999999999998 78899999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc-----------------cc--------------hHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV-----------------VN--------------YVQGV 405 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~-----------------~~--------------~~~~~ 405 (858)
|||+|++.|++||+ ++|++.++|++|||..+|+++.. .+ ..+..
T Consensus 326 SAT~dae~fs~YF~-----~~pvi~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li 400 (924)
T KOG0920|consen 326 SATLDAELFSDYFG-----GCPVITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLI 400 (924)
T ss_pred eeecchHHHHHHhC-----CCceEeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHH
Confidence 99999999999999 79999999999999988875321 01 01233
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcc
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA 485 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvA 485 (858)
...+..|+.....|.||||+||.++|..+.+.|.....+.+...+.+.||||.|+..+|+.||+..+.|.||||+|||||
T Consensus 401 ~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~RKIIlaTNIA 480 (924)
T KOG0920|consen 401 EDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGTRKIILATNIA 480 (924)
T ss_pred HHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCcchhhhhhhhH
Confidence 45566677777789999999999999999999986544443356999999999999999999999999999999999999
Q ss_pred cccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCC
Q psy2470 486 ETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIP 563 (858)
Q Consensus 486 ergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p 563 (858)
|+|||||||.||||+|+.|++.||+..+++.+...|+|++++.||+|||||..+|+||+|| ..|+.+.. ++
T Consensus 481 ETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~~~----~~--- 553 (924)
T KOG0920|consen 481 ETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKLML----AY--- 553 (924)
T ss_pred hhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccCCeeEEeechhhhhhccc----cc---
Confidence 9999999999999999999999999999999999999999999999999999999999999 66766544 25
Q ss_pred CCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCccc--ccCCc----hHHHHHHHHHhcCCeeeeeeecC
Q psy2470 564 TIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRI--SVTSL----ANRVSEELRTTLGHTVGYTIRFD 637 (858)
Q Consensus 564 ~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~--~~l~~----a~~~a~~~L~~lg~lv~y~v~~~ 637 (858)
.+ |||+|++|. ++||+.|.+....+..| -++++ ++..|++.|..+|++ + +
T Consensus 554 q~---PEilR~pL~---------------~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL-----~-~ 609 (924)
T KOG0920|consen 554 QL---PEILRTPLE---------------ELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGAL-----D-E 609 (924)
T ss_pred CC---hHHHhChHH---------------HhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccc-----c-C
Confidence 66 999999999 99999997776666543 12332 899999999999999 6 3
Q ss_pred CCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccC
Q psy2470 638 DCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQ 717 (858)
Q Consensus 638 ~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~ 717 (858)
+. ++| ++|..++.||+||.++|+ ++. +..|+|++++++|||+|+..
T Consensus 610 ~e---~LT-----~LG~~la~lPvd~~igK~------------------------ll~--g~if~cLdp~l~iaa~Ls~k 655 (924)
T KOG0920|consen 610 SE---ELT-----PLGLHLASLPVDVRIGKL------------------------LLF--GAIFGCLDPALTIAAALSFK 655 (924)
T ss_pred cc---cch-----HHHHHHHhCCCccccchh------------------------hee--hhhccccchhhhHHHHhccC
Confidence 33 489 999999999999999999 999 99999999999999999999
Q ss_pred ccccCCCChhhHHHHHHHHhccccC-CCchhhHHHHHHHHHHccc-----hHHHHHhccCCHHHHHHHHHHHHHHHHHHH
Q psy2470 718 DIFIKPSSGALSLKARVLRRNFEVE-QGDLLTLLNIFKFYEKQEN-----KKQFCHKYFFNYKVLKRAAELKNQMILLLK 791 (858)
Q Consensus 718 ~~f~~~~~~~~~~~~~~~~~~f~~~-~gDhltlLnif~~w~~~~~-----~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~ 791 (858)
+||+.|.+++ ..++++++.|... .|||++++++|+.|++... ..+||++|||+..+|+++.++|.|+.+.+.
T Consensus 656 ~PF~~~~~~~--~~~~~~~~~~~~~~~SD~la~~~ay~~w~~~~~~~~~~~~~fc~~~fLs~~~l~~i~~l~~q~~~~l~ 733 (924)
T KOG0920|consen 656 SPFVSPLGKR--EEADKAKKLLALDSISDHLAVVRAYAGWREILRSGPSAEKDFCEENFLSSNTLQEISSLRVQFLELLS 733 (924)
T ss_pred CCcccCCCch--hHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHhhccHHHHHHHHHHHHHHHHHhh
Confidence 9999999988 7777788888754 5999999999999987643 478999999999999999999999999999
Q ss_pred hcCCCCC------------CCCCChHHHHHHHHhcccccchhhcc---CCc---EEeecCCceEEEcCCCCCCCCC--CC
Q psy2470 792 KSSIPLV------------TSPRNTNAVLKCLTNGFFSNAAYLHY---SGV---YRTVRGNEDLYIHPSSVLYTLQ--QP 851 (858)
Q Consensus 792 ~~~~~~~------------~~~~~~~~i~k~l~aG~~~nvA~~~~---~~~---Y~t~~~~~~v~iHPsS~L~~~~--~P 851 (858)
++|+-.. ..+.+++.++.+||+|||||+|+... ..+ |.+- ....++|||+|++++.. ..
T Consensus 734 ~~g~~~~~~~~~~~~~~~n~~s~~~~~iravl~a~lyP~i~~~~~~~~~~~~~~~~~~-~~~~v~i~~~sv~~~~~~~~~ 812 (924)
T KOG0920|consen 734 DIGLIPISSTAALTDSECNHNSQNPELVRAVLCAGLYPNIAFVRRMEPKSKSVTFVTK-ADGRVIIHPSSVNEQSTGFQS 812 (924)
T ss_pred hcccccCCcccccCchhhhhcCCCHHHHHHHHhccCCCceeeeecccCCcCcceeecC-CceeEEEecchhhccccccCC
Confidence 9986221 23357889999999999999998764 222 2222 23689999999998532 33
Q ss_pred CeEEec
Q psy2470 852 QCTHLE 857 (858)
Q Consensus 852 ~wvvy~ 857 (858)
+|++|+
T Consensus 813 p~l~~~ 818 (924)
T KOG0920|consen 813 PFLVFP 818 (924)
T ss_pred cceEEe
Confidence 599997
|
|
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=674.10 Aligned_cols=499 Identities=22% Similarity=0.273 Sum_probs=410.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+. ... ...+++|++|||++|.|+++++++++|..+|.. |||
T Consensus 23 vvv~A~TGSGKT-----t~~pl~lL~-------~~~-----~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~---VGy 82 (812)
T PRK11664 23 VLLKAPTGAGKS-----TWLPLQLLQ-------HGG-----INGKIIMLEPRRLAARNVAQRLAEQLGEKPGET---VGY 82 (812)
T ss_pred EEEEcCCCCCHH-----HHHHHHHHH-------cCC-----cCCeEEEECChHHHHHHHHHHHHHHhCcccCce---EEE
Confidence 445799999999 333333221 111 112589999999999999999999999999999 999
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.+++++..+..++|+|+|||+|++ +..++.|++|++| |+++ +|+++++++++.+ ..++++|+++
T Consensus 83 ~vr~~~~~~~~t~I~v~T~G~Llr~l~~d~~L~~v~~IIlDEaHER~l~----~Dl~L~ll~~i~~----~lr~~lqlil 154 (812)
T PRK11664 83 RMRAESKVGPNTRLEVVTEGILTRMIQRDPELSGVGLVILDEFHERSLQ----ADLALALLLDVQQ----GLRDDLKLLI 154 (812)
T ss_pred EecCccccCCCCcEEEEChhHHHHHHhhCCCcCcCcEEEEcCCCccccc----cchHHHHHHHHHH----hCCccceEEE
Confidence 999999888889999999999999 8889999999988 8999 9999999988762 3578899999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHH-HHHHHHhhCCCCCEEEEcCCHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD-TAIKIHESMPVGDILAFVIGLEQIEHI 434 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~-~l~~i~~~~~~g~iLVFl~t~~~i~~l 434 (858)
||||++.+.+++||. +++++.++|+.+||+++|......++.+..+. .+..++. +..|++|||+||+++|+.+
T Consensus 155 mSATl~~~~l~~~~~-----~~~~I~~~gr~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~-~~~g~iLVFlpg~~ei~~l 228 (812)
T PRK11664 155 MSATLDNDRLQQLLP-----DAPVIVSEGRSFPVERRYQPLPAHQRFDEAVARATAELLR-QESGSLLLFLPGVGEIQRV 228 (812)
T ss_pred EecCCCHHHHHHhcC-----CCCEEEecCccccceEEeccCchhhhHHHHHHHHHHHHHH-hCCCCEEEEcCCHHHHHHH
Confidence 999999999999987 68999999999999999987665555543332 3444433 3479999999999999999
Q ss_pred HHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCC
Q psy2470 435 IGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLT 514 (858)
Q Consensus 435 ~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~ 514 (858)
++.|++... .++.+.+|||+|++++|.++|++|++|++||||||||||||||||+|+||||+|++|.+.||++.|+
T Consensus 229 ~~~L~~~~~----~~~~v~~Lhg~l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~ 304 (812)
T PRK11664 229 QEQLASRVA----SDVLLCPLYGALSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGL 304 (812)
T ss_pred HHHHHHhcc----CCceEEEeeCCCCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCc
Confidence 999986311 2789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhh
Q psy2470 515 NSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEA 592 (858)
Q Consensus 515 ~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~ 592 (858)
+.|.+.|||+++|.||+|||||+++|+||||| ++|+.+++ + +. |||++++|+
T Consensus 305 ~~L~~~~iSkasa~QR~GRaGR~~~G~cyrL~t~~~~~~l~~-----~---~~---PEI~r~dL~--------------- 358 (812)
T PRK11664 305 TRLVTQRISQASMTQRAGRAGRLEPGICLHLYSKEQAERAAA-----Q---SE---PEILHSDLS--------------- 358 (812)
T ss_pred ceeEEEeechhhhhhhccccCCCCCcEEEEecCHHHHhhCcc-----C---CC---CceeccchH---------------
Confidence 99999999999999999999999999999999 77788888 7 77 999999999
Q ss_pred hHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 593 GWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 593 ~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
+++|+++.+++.++..+.|+++ ++..|++.|..+|++ + +++. +| ++|+.|++||+||+++++
T Consensus 359 ~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgal-----d-~~g~---lT-----~~G~~m~~lp~~Prla~~ 424 (812)
T PRK11664 359 GLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGAL-----D-GQGR---LT-----ARGRKMAALGNDPRLAAM 424 (812)
T ss_pred HHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHhcCCchHHHHH
Confidence 9999999999999999999988 999999999999999 7 5555 89 999999999999999999
Q ss_pred eeEeecccccccchhhHHHHHHHHHHhhhccccCCch--hhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCch
Q psy2470 669 SVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSD--EIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDL 746 (858)
Q Consensus 669 ~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~--~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDh 746 (858)
++. +..++|.. .++.++|+|+..+. .. .+|.
T Consensus 425 ------------------------ll~--a~~~~~~~l~~a~~laall~e~~~-----~~----------------~~d~ 457 (812)
T PRK11664 425 ------------------------LVA--AKEDDEAALATAAKLAAILEEPPR-----SG----------------SSDL 457 (812)
T ss_pred ------------------------HHH--HHhcCchhhHHHHHHHHhhccCCC-----CC----------------cccH
Confidence 888 66677553 56667777765321 00 2343
Q ss_pred hhHHHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCC
Q psy2470 747 LTLLNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSG 826 (858)
Q Consensus 747 ltlLnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~ 826 (858)
...++.+. ..|+ ..+.++.+|+... .+ + .+.+.+.++|++||+.+||++..++
T Consensus 458 ~~~l~~~~--------~~~~----------~~~~~~~~~~~~~---~~-~-----~~~~~~~~~la~aypdriA~~r~~~ 510 (812)
T PRK11664 458 GVALSRKQ--------PHWQ----------QRAQQLLKRLNVR---GG-E-----ADSSLIAPLLALAFPDRIARRRGQD 510 (812)
T ss_pred HHHHHHHH--------HHHH----------HHHHHHHHHHHhh---cc-c-----CChHHHHHHHHHHCHHHHhhhcCCC
Confidence 32332221 2353 3455555555331 11 1 1344588999999999999976555
Q ss_pred cEEeecCCceEEEcCCCCCCCCCCCCeEEec
Q psy2470 827 VYRTVRGNEDLYIHPSSVLYTLQQPQCTHLE 857 (858)
Q Consensus 827 ~Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~ 857 (858)
.|..+.++..+.+||+|.|++ .+|+++.
T Consensus 511 ~~~~l~~G~~a~l~~~~~l~~---~~~lv~a 538 (812)
T PRK11664 511 GRYQLANGMGAMLDADDALSR---HEWLIAP 538 (812)
T ss_pred CeEEeeCCCeEEECCCCcccC---CCeEEEE
Confidence 566777889999999999985 3899986
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-72 Score=670.78 Aligned_cols=507 Identities=23% Similarity=0.269 Sum_probs=415.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| +++|...... . . ...+++|++|||++|.|+|+++++++|..+|.. |||.
T Consensus 21 Ii~a~TGSGKT-------T~vpl~lL~~--~---~-----~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~---VGy~ 80 (819)
T TIGR01970 21 VLEAPPGAGKS-------TAVPLALLDA--P---G-----IGGKIIMLEPRRLAARSAAQRLASQLGEAVGQT---VGYR 80 (819)
T ss_pred EEECCCCCCHH-------HHHHHHHHHh--h---c-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcE---EEEE
Confidence 35799999999 4444333211 1 0 123689999999999999999999999999999 9999
Q ss_pred EeccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+++++..+..++|+|+|||+|++ +.+++.|++|++| |+++ +|+.+++++++.. ..++++|+|+|
T Consensus 81 vr~~~~~s~~t~I~v~T~G~Llr~l~~d~~L~~v~~VIiDEaHER~L~----~Dl~L~ll~~i~~----~lr~dlqlIlm 152 (819)
T TIGR01970 81 VRGENKVSRRTRLEVVTEGILTRMIQDDPELDGVGALIFDEFHERSLD----ADLGLALALDVQS----SLREDLKILAM 152 (819)
T ss_pred EccccccCCCCcEEEECCcHHHHHHhhCcccccCCEEEEeccchhhhc----cchHHHHHHHHHH----hcCCCceEEEE
Confidence 99999888889999999999999 8888999999988 8999 9999999888762 34778999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHH-HHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGV-VDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~-~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
|||++.+.|++||. +++++.++|+.|||+++|......++.... ...+..++.. ..|+||||+||+++|+.++
T Consensus 153 SATl~~~~l~~~l~-----~~~vI~~~gr~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~ 226 (819)
T TIGR01970 153 SATLDGERLSSLLP-----DAPVVESEGRSFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQ 226 (819)
T ss_pred eCCCCHHHHHHHcC-----CCcEEEecCcceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHH
Confidence 99999999999997 689999999999999999876555444332 2344444433 4799999999999999999
Q ss_pred HHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCC
Q psy2470 436 GILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTN 515 (858)
Q Consensus 436 ~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~ 515 (858)
+.|++... +++.+.+|||+|++++|.++|++|++|++||||||||||||||||+|+||||+|++|.+.||+.+|++
T Consensus 227 ~~L~~~~~----~~~~v~pLHg~L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~ 302 (819)
T TIGR01970 227 EQLAERLD----SDVLICPLYGELSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGIT 302 (819)
T ss_pred HHHHhhcC----CCcEEEEecCCCCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCc
Confidence 99986311 37999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeeecCHhhHHHhhcccCCCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhh
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAG 593 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~ 593 (858)
.|.+.|||+++|.||+|||||+++|+||+|| ++|..|++ + +. |||++++|+ +
T Consensus 303 ~L~~~~iSkasa~QR~GRAGR~~~G~cyrL~t~~~~~~l~~-----~---~~---PEI~r~~L~---------------~ 356 (819)
T TIGR01970 303 RLETVRISQASATQRAGRAGRLEPGVCYRLWSEEQHQRLPA-----Q---DE---PEILQADLS---------------G 356 (819)
T ss_pred eeeEEEECHHHHHhhhhhcCCCCCCEEEEeCCHHHHHhhhc-----C---CC---cceeccCcH---------------H
Confidence 9999999999999999999999999999999 77778888 7 67 999999999 9
Q ss_pred HhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccce
Q psy2470 594 WCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYS 669 (858)
Q Consensus 594 ~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~ 669 (858)
++|+++.+++.++..+.|+++ ++..|.+.|..+|++ + +++. +| ++|+.|++||+||++++|
T Consensus 357 ~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgal-----d-~~~~---lT-----~~G~~~~~lp~~p~l~~~- 421 (819)
T TIGR01970 357 LALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGAL-----D-AQGR---LT-----AHGKAMAALGCHPRLAAM- 421 (819)
T ss_pred HHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHhcCCCHHHHHH-
Confidence 999999999999999999987 899999999999999 6 5555 88 999999999999999999
Q ss_pred eEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhH
Q psy2470 670 VIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTL 749 (858)
Q Consensus 670 ~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltl 749 (858)
++. +..++|..+++.|+|+|+.++++.. ..+|....
T Consensus 422 -----------------------ll~--~~~~~~~~~~~~iaa~ls~~~~~~~-------------------~~~d~~~~ 457 (819)
T TIGR01970 422 -----------------------LLS--AHSTGLAALACDLAALLEERGLPRQ-------------------GGADLMNR 457 (819)
T ss_pred -----------------------HHH--hhhcCCHHHHHHHHHHHcCCCCCCC-------------------CcccHHHH
Confidence 998 8889999999999999999876421 13576555
Q ss_pred HHHHHHHHHccchHHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCC-CCCCCCChHHHHHHHHhcccccchhhccC-Cc
Q psy2470 750 LNIFKFYEKQENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIP-LVTSPRNTNAVLKCLTNGFFSNAAYLHYS-GV 827 (858)
Q Consensus 750 Lnif~~w~~~~~~~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~-~~~~~~~~~~i~k~l~aG~~~nvA~~~~~-~~ 827 (858)
+..++.. ....|+ .+.++.+|+...+ +.. ......+...+-.+++.+|..+||++..+ +.
T Consensus 458 ~~~~~~~-----~~~~~~----------~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~lla~a~pdria~~r~~~~~ 519 (819)
T TIGR01970 458 LHRLQQG-----RQGRGQ----------RAQQLAKKLRRRL---RFSQADSGAIASHALGLLLALAFPDRIAKRRGQPGR 519 (819)
T ss_pred HHHHhhc-----chhhHH----------HHHHHHHHHHHHh---CcCcCCCcccccchHhHHHhhhChHhheeccCCCCe
Confidence 5555421 011222 2344445554432 211 00011111125668899999999987654 34
Q ss_pred EEeecCCceEEEcCCCCCCCCCCCCeEEe
Q psy2470 828 YRTVRGNEDLYIHPSSVLYTLQQPQCTHL 856 (858)
Q Consensus 828 Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy 856 (858)
|. +.++..+.++|.|.|++. +|++-
T Consensus 520 y~-l~~G~~~~l~~~~~l~~~---~~l~~ 544 (819)
T TIGR01970 520 YQ-LANGRGAVLSAEDALARE---PWLVA 544 (819)
T ss_pred EE-CCCCCeeEeCCCCcccCC---CeEEE
Confidence 64 456688999999999864 79874
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >KOG0330|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=402.74 Aligned_cols=306 Identities=14% Similarity=0.211 Sum_probs=237.4
Q ss_pred CCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCC
Q psy2470 165 SGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGD 244 (858)
Q Consensus 165 ~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~ 244 (858)
.+|...|...|+..|++.+. + ..|+|||||| .||.+|-+.. .++.++
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dv--I------------------glAeTGSGKT-----~afaLPIl~~---LL~~p~----- 128 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDV--I------------------GLAETGSGKT-----GAFALPILQR---LLQEPK----- 128 (476)
T ss_pred CCCchhhhhhcchhhCCCcE--E------------------EEeccCCCch-----hhhHHHHHHH---HHcCCC-----
Confidence 34666677777777766432 1 3599999999 9999996653 233332
Q ss_pred CccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce------eecceeEEEeecCcccc-CCCc--cCCC
Q psy2470 245 KARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGVE--PISQ 315 (858)
Q Consensus 245 ~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~~--~~L~ 315 (858)
..++||++||||||.||++++ +.+|..+|.. +-..+++.++ ..+.+||+|||||||.+ +.+. ..|.
T Consensus 129 -~~~~lVLtPtRELA~QI~e~f-e~Lg~~iglr---~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le 203 (476)
T KOG0330|consen 129 -LFFALVLTPTRELAQQIAEQF-EALGSGIGLR---VAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLENTKGFSLE 203 (476)
T ss_pred -CceEEEecCcHHHHHHHHHHH-HHhccccCeE---EEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHhccCccHH
Confidence 257899999999999999877 6666666665 3333333332 33679999999999999 4433 3455
Q ss_pred ccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec
Q psy2470 316 SYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLY 387 (858)
Q Consensus 316 ~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~ 387 (858)
++. |+ |.|| +||...+-+++. ..|+++|++|||||| .+.++..--.. +|..+.+..+..
T Consensus 204 ~lk~LVlDEADrlLd----~dF~~~ld~ILk-----~ip~erqt~LfsATMt~kv~kL~rasl~----~p~~v~~s~ky~ 270 (476)
T KOG0330|consen 204 QLKFLVLDEADRLLD----MDFEEELDYILK-----VIPRERQTFLFSATMTKKVRKLQRASLD----NPVKVAVSSKYQ 270 (476)
T ss_pred HhHHHhhchHHhhhh----hhhHHHHHHHHH-----hcCccceEEEEEeecchhhHHHHhhccC----CCeEEeccchhc
Confidence 444 44 9999 888777666665 778999999999999 67777754332 455566665543
Q ss_pred ---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 388 ---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 388 ---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
.++++|...+..+.. ..+.++++....+.+|||++++...+.++-.|+.. |+.+.+|||+|+|+.|
T Consensus 271 tv~~lkQ~ylfv~~k~K~----~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~l-------g~~a~~LhGqmsq~~R 339 (476)
T KOG0330|consen 271 TVDHLKQTYLFVPGKDKD----TYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNL-------GFQAIPLHGQMSQSKR 339 (476)
T ss_pred chHHhhhheEeccccccc----hhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhc-------CcceecccchhhHHHH
Confidence 456777776665432 33555555556789999999999999999999988 9999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.-+|+.|++|.+.||||||||+||+|||.|++||| || .|.+..+|+||+||+||+|. |+++
T Consensus 340 lg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVN--------yD----------iP~~skDYIHRvGRtaRaGrsG~~I 401 (476)
T KOG0330|consen 340 LGALNKFKAGARSILVCTDVASRGLDIPHVDVVVN--------YD----------IPTHSKDYIHRVGRTARAGRSGKAI 401 (476)
T ss_pred HHHHHHHhccCCcEEEecchhcccCCCCCceEEEe--------cC----------CCCcHHHHHHHcccccccCCCcceE
Confidence 99999999999999999999999999999999999 88 89999999999999999998 9999
Q ss_pred EehhhHh
Q psy2470 544 RKNFMYN 550 (858)
Q Consensus 544 rL~~~~~ 550 (858)
+|...|+
T Consensus 402 tlVtqyD 408 (476)
T KOG0330|consen 402 TLVTQYD 408 (476)
T ss_pred EEEehhh
Confidence 9994453
|
|
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-46 Score=436.84 Aligned_cols=371 Identities=18% Similarity=0.182 Sum_probs=266.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccc----cCCCCC-CCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEe
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRY----IGQPEM-GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY 278 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~----l~~~~~-g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~ 278 (858)
+-+.|+|||||| .++|++++...+ +...+. .......+++|++|||+||.|++.++.+..|....
T Consensus 182 vIv~A~TGSGKT-------tqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~--- 251 (675)
T PHA02653 182 VVLTGGTGVGKT-------SQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEI--- 251 (675)
T ss_pred EEEECCCCCCch-------hHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCcccc---
Confidence 455799999999 677766532211 111100 00112346899999999999999999887765211
Q ss_pred eeeeEEEecccee-------ecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhc
Q psy2470 279 ISRGYMFRKGRMK-------ILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLK 344 (858)
Q Consensus 279 ~~vG~~vr~~~~~-------~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~ 344 (858)
.++.+.++++... .+..+|+++|+|.. .+.|+++++| |+.+ +|+++++++++.
T Consensus 252 ~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~-----l~~L~~v~~VVIDEaHEr~~~----~DllL~llk~~~---- 318 (675)
T PHA02653 252 DGSPISLKYGSIPDELINTNPKPYGLVFSTHKLT-----LNKLFDYGTVIIDEVHEHDQI----GDIIIAVARKHI---- 318 (675)
T ss_pred CCceEEEEECCcchHHhhcccCCCCEEEEeCccc-----ccccccCCEEEccccccCccc----hhHHHHHHHHhh----
Confidence 0122223333222 12457999998842 2457778777 7777 899999888654
Q ss_pred ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-cceeEEEecCCc-----cchHHHHHHHHHHHHhh-
Q psy2470 345 PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-YPVSVYYSNDPV-----VNYVQGVVDTAIKIHES- 415 (858)
Q Consensus 345 ~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-~~v~~~~~~~~~-----~~~~~~~~~~l~~i~~~- 415 (858)
+..+|+++||||+ +++.|++||. +++++.++|+. +||+++|..... .++.+.....+..++..
T Consensus 319 ---~~~rq~ILmSATl~~dv~~l~~~~~-----~p~~I~I~grt~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~ 390 (675)
T PHA02653 319 ---DKIRSLFLMTATLEDDRDRIKEFFP-----NPAFVHIPGGTLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKY 390 (675)
T ss_pred ---hhcCEEEEEccCCcHhHHHHHHHhc-----CCcEEEeCCCcCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHh
Confidence 2335999999999 5778988887 78999999985 999999986442 12222222223333322
Q ss_pred --CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC-CCCcEEEEEecCcccccCCCC
Q psy2470 416 --MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT-PRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 416 --~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f-~~g~~kVlvATdvAergldIp 492 (858)
..+|++|||+||+++|+.+++.|++.. +++.+.+|||+|+|.+ +++++| ++|++||||||||||||||||
T Consensus 391 ~~~~~g~iLVFlpg~~ei~~l~~~L~~~~-----~~~~v~~LHG~Lsq~e--q~l~~ff~~gk~kILVATdIAERGIDIp 463 (675)
T PHA02653 391 TPPKGSSGIVFVASVSQCEEYKKYLEKRL-----PIYDFYIIHGKVPNID--EILEKVYSSKNPSIIISTPYLESSVTIR 463 (675)
T ss_pred hcccCCcEEEEECcHHHHHHHHHHHHhhc-----CCceEEeccCCcCHHH--HHHHHHhccCceeEEeccChhhcccccc
Confidence 235799999999999999999998651 3689999999999974 344454 689999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEehhhHhhhhhhhhccCCCCCCCCCCCcc
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKNFMYNRLFIHFCVSRNIPTIPNDPKDV 572 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~~~~~~l~~~~~~~~~~p~~~~~Pei~ 572 (858)
||++|||+|+++.+. +..|+ ..|+|+++|+||+|||||+++|.||+||.+.+ + . ++ +++.
T Consensus 464 ~V~~VID~G~~k~p~--~~~g~----~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~-~-~---------pI---~ri~ 523 (675)
T PHA02653 464 NATHVYDTGRVYVPE--PFGGK----EMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL-L-K---------PI---KRID 523 (675)
T ss_pred CeeEEEECCCccCCC--cccCc----ccccCHHHHHHhccCcCCCCCCeEEEEECHHH-h-H---------HH---HHHh
Confidence 999999999888763 44454 36999999999999999999999999992221 1 1 11 3333
Q ss_pred ccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccce
Q psy2470 573 KCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIK 648 (858)
Q Consensus 573 r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~ 648 (858)
.++|+ +++|+++.|++..+..+ |+++ ++..|.+.|..+|+. + + . +|
T Consensus 524 ~~~L~---------------~~vL~lk~~g~~~~~~~-~ldpP~~~~l~~A~~~L~~lga~-----~-~--~---l~--- 573 (675)
T PHA02653 524 SEFLH---------------NYILYAKYFNLTLPEDL-FVIPSNLDRLRKTEEYIDSFNIS-----I-E--K---WY--- 573 (675)
T ss_pred HHHHH---------------HHHHHHHHcCCCCcccc-cCCCCCHHHHHHHHHHHHHcCCC-----c-h--h---hh---
Confidence 33477 88999999999655544 7776 899999999999987 4 2 2 67
Q ss_pred ecch--hhHHHhcccCcccccc
Q psy2470 649 YMTE--GILMREMMTDPLLRKY 668 (858)
Q Consensus 649 ~~~~--G~lls~L~~dp~l~~~ 668 (858)
.+ |+.++.+ ..+|+
T Consensus 574 --~l~~~~~~~~~----~~~k~ 589 (675)
T PHA02653 574 --EILSNYYVNML----EYAKI 589 (675)
T ss_pred --hhhccccHHHH----HHhHH
Confidence 66 8888888 56666
|
|
| >KOG0331|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-46 Score=417.37 Aligned_cols=319 Identities=14% Similarity=0.123 Sum_probs=233.7
Q ss_pred cccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCC
Q psy2470 160 CDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPE 239 (858)
Q Consensus 160 ~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~ 239 (858)
+....++|..+|.+...+.+-+.+- + .+|+|||||| +||++|.+.+.... +..
T Consensus 107 k~~g~~~PtpIQaq~wp~~l~GrD~--v------------------~iA~TGSGKT-----Lay~lP~i~~l~~~--~~~ 159 (519)
T KOG0331|consen 107 KEQGFEKPTPIQAQGWPIALSGRDL--V------------------GIARTGSGKT-----LAYLLPAIVHLNNE--QGK 159 (519)
T ss_pred HhcCCCCCchhhhcccceeccCCce--E------------------EEeccCCcch-----hhhhhHHHHHHHhc--ccc
Confidence 3445567888888888888877432 2 2699999999 99999977754332 222
Q ss_pred CCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCc----cEeeeeeEEEeccceeecceeEEEeecCcccc--CCCccC
Q psy2470 240 MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMD----FEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEPI 313 (858)
Q Consensus 240 ~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g----~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~ 313 (858)
.+.++ .+.+||++||||||.|+.+.+ .+.+...+ ..|||+-++-+..+ ...+.+|+|+|||||+| ..+...
T Consensus 160 ~~~~~-~P~vLVL~PTRELA~QV~~~~-~~~~~~~~~~~~cvyGG~~~~~Q~~~-l~~gvdiviaTPGRl~d~le~g~~~ 236 (519)
T KOG0331|consen 160 LSRGD-GPIVLVLAPTRELAVQVQAEA-REFGKSLRLRSTCVYGGAPKGPQLRD-LERGVDVVIATPGRLIDLLEEGSLN 236 (519)
T ss_pred ccCCC-CCeEEEEcCcHHHHHHHHHHH-HHHcCCCCccEEEEeCCCCccHHHHH-HhcCCcEEEeCChHHHHHHHcCCcc
Confidence 22222 345899999999999996654 55554444 44555544433332 23568999999999999 345567
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH 385 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~ 385 (858)
|++++++ |||+ ++|-..+.+++. +..++++|++++|||+ .++.|++-|.. ++..+.+-+.
T Consensus 237 l~~v~ylVLDEADrMld----mGFe~qI~~Il~----~i~~~~rQtlm~saTwp~~v~~lA~~fl~----~~~~i~ig~~ 304 (519)
T KOG0331|consen 237 LSRVTYLVLDEADRMLD----MGFEPQIRKILS----QIPRPDRQTLMFSATWPKEVRQLAEDFLN----NPIQINVGNK 304 (519)
T ss_pred ccceeEEEeccHHhhhc----cccHHHHHHHHH----hcCCCcccEEEEeeeccHHHHHHHHHHhc----CceEEEecch
Confidence 7776666 9999 666666666555 2336778999999999 67888887763 4444444333
Q ss_pred e-----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCC
Q psy2470 386 L-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460 (858)
Q Consensus 386 ~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~ 460 (858)
. +.+.++-........ ..++..++..+.....|++||||.|+.+|++++..|++. ++.+.+|||+++
T Consensus 305 ~~~~a~~~i~qive~~~~~~K-~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~-------~~~a~~iHGd~s 376 (519)
T KOG0331|consen 305 KELKANHNIRQIVEVCDETAK-LRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRK-------GWPAVAIHGDKS 376 (519)
T ss_pred hhhhhhcchhhhhhhcCHHHH-HHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhc-------Ccceeeeccccc
Confidence 1 222222222121111 122223333333456789999999999999999999976 799999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 461 q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
|.+|..+++.|++|+..||||||||+||||||+|++||| || .|-+.++|+||+|||||+|.
T Consensus 377 Q~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVIn--------yd----------fP~~vEdYVHRiGRTGRa~~~ 438 (519)
T KOG0331|consen 377 QSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVIN--------YD----------FPNNVEDYVHRIGRTGRAGKK 438 (519)
T ss_pred HHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEe--------CC----------CCCCHHHHHhhcCccccCCCC
Confidence 999999999999999999999999999999999999999 88 78889999999999999887
Q ss_pred ceEEEeh
Q psy2470 540 GHVYRKN 546 (858)
Q Consensus 540 G~~~rL~ 546 (858)
|.+|.++
T Consensus 439 G~A~tff 445 (519)
T KOG0331|consen 439 GTAITFF 445 (519)
T ss_pred ceEEEEE
Confidence 9999999
|
|
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-45 Score=410.83 Aligned_cols=550 Identities=21% Similarity=0.287 Sum_probs=414.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccc-cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQL-RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l-~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
|.++||+||| +++-+.+ + .++.. +.|. .+-+.+..|||.-|+++|++|+++.+..+|.+ |||+
T Consensus 398 I~getgcgk~-------tq~aq~i--Le~~~~n---s~g~-~~na~v~qprrisaisiaerva~er~e~~g~t---vgy~ 461 (1282)
T KOG0921|consen 398 IKGETGCGKS-------TQVAQFL--LESFLEN---SNGA-SFNAVVSQPRRISAISLAERVANERGEEVGET---CGYN 461 (1282)
T ss_pred Eeecccccch-------hHHHHHH--HHHHhhc---cccc-cccceeccccccchHHHHHHHHHhhHHhhccc---cccc
Confidence 4699999999 4443332 2 22222 2221 23468899999999999999999999999999 9999
Q ss_pred Eeccceee-cceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKI-LVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~-~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+|+++..+ ....|.+||-|.+++++.+... ..+++ |..+ +||++-+++.+. -.-+++.+++|
T Consensus 462 vRf~Sa~prpyg~i~fctvgvllr~~e~glr-g~sh~i~deiherdv~----~dfll~~lr~m~-----~ty~dl~v~lm 531 (1282)
T KOG0921|consen 462 VRFDSATPRPYGSIMFCTVGVLLRMMENGLR-GISHVIIDEIHERDVD----TDFVLIVLREMI-----STYRDLRVVLM 531 (1282)
T ss_pred ccccccccccccceeeeccchhhhhhhhccc-ccccccchhhhhhccc----hHHHHHHHHhhh-----ccchhhhhhhh
Confidence 99999887 3468999999999994444333 33333 8999 999999999998 67789999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc-------------------------cc-----------
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV-------------------------VN----------- 400 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~-------------------------~~----------- 400 (858)
|||+|.+.|..||. .+|.+.+.|+++|++.+|..... .+
T Consensus 532 satIdTd~f~~~f~-----~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~d 606 (1282)
T KOG0921|consen 532 SATIDTDLFTNFFS-----SIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCD 606 (1282)
T ss_pred hcccchhhhhhhhc-----cccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccC
Confidence 99999999999999 68888999999888765442100 00
Q ss_pred --hH----------------HHHHHHHH-HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCH
Q psy2470 401 --YV----------------QGVVDTAI-KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPN 461 (858)
Q Consensus 401 --~~----------------~~~~~~l~-~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q 461 (858)
+. -...+.+. .+....-+|-|+||+|++.++-.|+..|....-+.....+.++++|+.++-
T Consensus 607 d~~~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~ 686 (1282)
T KOG0921|consen 607 PSYNESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTS 686 (1282)
T ss_pred hhhcchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhccc
Confidence 00 00111222 222223368999999999999999999986655555668899999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCce
Q psy2470 462 NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGH 541 (858)
Q Consensus 462 ~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~ 541 (858)
.+|.+||+..+.|..|+|++||+|++++||.++.+|||.+..+.+.|-..+.+..+.+.|.|+-+-+||.||+||..+|.
T Consensus 687 ~eqrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~ 766 (1282)
T KOG0921|consen 687 QEQRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGF 766 (1282)
T ss_pred HhhhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccc
Confidence 99999999999999999999999999999999999999999999999989999999999999999999999999999999
Q ss_pred EEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCC----------CCCccc
Q psy2470 542 VYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGI----------TEPRRI 609 (858)
Q Consensus 542 ~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~----------~~~~~~ 609 (858)
||++. ..|+.+.+ + -. ||+.|.++. ...+..+.+.. -+|.-.
T Consensus 767 ~f~lcs~arF~~l~~-----~---~t---~em~r~plh---------------emalTikll~l~SI~~fl~kal~~~p~ 820 (1282)
T KOG0921|consen 767 CFHLCSRARFEALED-----H---GT---AEMFRTPLH---------------EIALTIKLLRLGSIGEFLGKALQPPPY 820 (1282)
T ss_pred cccccHHHHHHHHHh-----c---Cc---HhhhcCccH---------------HHHhhHHHHHhhhHHHHHhhccCCCch
Confidence 99999 66777766 5 45 899999988 33333222111 122222
Q ss_pred ccCCchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHH
Q psy2470 610 SVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGL 689 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~ 689 (858)
+ ++..+...+..++++ + .+.. +| ++|+.++++|+.|..+++
T Consensus 821 d----av~e~e~~l~~m~~l-----d-~n~e---lt-----~lg~~la~l~iep~~~k~--------------------- 861 (1282)
T KOG0921|consen 821 D----AVIEAEAVLREMGAL-----D-ANDE---LT-----PLGRMLARLPIEPRIGKM--------------------- 861 (1282)
T ss_pred h----hccCchHHHHHhhhh-----h-ccCc---cc-----chhhhhhhccCcccccce---------------------
Confidence 2 444455666677777 5 2222 68 999999999999999999
Q ss_pred HHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhH---HHHHHHHhccccC-CCchhhHHHHHHHHHHccchHHH
Q psy2470 690 LKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALS---LKARVLRRNFEVE-QGDLLTLLNIFKFYEKQENKKQF 765 (858)
Q Consensus 690 l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~---~~~~~~~~~f~~~-~gDhltlLnif~~w~~~~~~~~w 765 (858)
++. +..++|...++.+|+..++..+|......... .+..-++++|++. ..||.+.+..|..|.-....++|
T Consensus 862 ---~~l--g~~~g~~~~m~~~as~~s~~~~~~~~~~~~~rl~g~q~~~~g~kfsdhva~~~v~q~~r~~~q~ga~~e~ef 936 (1282)
T KOG0921|consen 862 ---MIL--GTALGAGSVMCDVASAMSFPTPFVPREKHHSRLSGTQRKFAGNKFSDHVAIVSVIQGYREAVQMGAAAEREF 936 (1282)
T ss_pred ---eee--chhhccchhhhhhhcccccccccccccccccccccchhhccccccccchhhhhhhhhhHHHhhhhhhhhhhH
Confidence 777 77889999999999988887666542211100 0111124444432 46777777777777766667899
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCC----------CCCCChHHHHHHHHhcccccchhhccCCcEEeecCCc
Q psy2470 766 CHKYFFNYKVLKRAAELKNQMILLLKKSSIPLV----------TSPRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNE 835 (858)
Q Consensus 766 C~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~----------~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~ 835 (858)
|.+.+++.+.|+.....|.|+..+|+.+++|-. .-+.+...++..||.++|||+|....+.+-.|... .
T Consensus 937 c~r~~l~~~~~~~t~~a~~ql~d~L~q~~fpe~~~~~~~v~~ng~d~~l~~~~~lL~~~lypn~~~y~ekrkvLtTe~-~ 1015 (1282)
T KOG0921|consen 937 CERYSLSNPVLKMTDGARRQLIDVLRQCSFPEDILFDISVNVNGPDRELNLMRSLLVMALYPNVAYYVEKRKVLTTEQ-S 1015 (1282)
T ss_pred hHhhhhcchhhhhhhhhHHHHHHHHHhccCccccccceeeccCCCCchhHHHHHHHHhhcCCccceeccceeEEeecc-h
Confidence 999999999999999999999999998876421 12223445677899999999998776655555544 4
Q ss_pred eEEEcCCCCCC--CCC----CCCeEEec
Q psy2470 836 DLYIHPSSVLY--TLQ----QPQCTHLE 857 (858)
Q Consensus 836 ~v~iHPsS~L~--~~~----~P~wvvy~ 857 (858)
...||-+|++. ..+ |-++.||.
T Consensus 1016 ~alihk~Svncp~S~qdM~fPsPFFVFG 1043 (1282)
T KOG0921|consen 1016 SALIHKYSVNCPNSRQEMDFPSPFFVFG 1043 (1282)
T ss_pred hhhhhhhcccCCCcccccCCCCceeeec
Confidence 56688887775 222 44888885
|
|
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-45 Score=422.71 Aligned_cols=319 Identities=18% Similarity=0.218 Sum_probs=248.0
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
..++.+.+..++.|...|...+...+.+. +.+ ..|||||||| +||.+|.+.....
T Consensus 39 ~ll~~l~~~gf~~pt~IQ~~~IP~~l~g~--Dvi------------------~~A~TGsGKT-----~Af~lP~l~~l~~ 93 (513)
T COG0513 39 ELLQALKDLGFEEPTPIQLAAIPLILAGR--DVL------------------GQAQTGTGKT-----AAFLLPLLQKILK 93 (513)
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHhCCC--CEE------------------EECCCCChHH-----HHHHHHHHHHHhc
Confidence 44555666778889999999999998883 323 3599999999 9999997764211
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHh-CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEM-GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~-g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
. .. ... .++||++||||||.|+++.+ ++.. +.++...|||+++..+..... .+++|+|+|||||+| +
T Consensus 94 ~---~~---~~~-~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~-~~~~ivVaTPGRllD~i 165 (513)
T COG0513 94 S---VE---RKY-VSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALK-RGVDIVVATPGRLLDLI 165 (513)
T ss_pred c---cc---cCC-CceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHh-cCCCEEEECccHHHHHH
Confidence 1 11 111 12899999999999997755 3444 455566666666555543333 359999999999999 3
Q ss_pred -CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 309 -GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 309 -~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
.+...++++.++ |||+ ++|..++.+.+. ..++++|+++||||+ ++..+++.+.. +|..
T Consensus 166 ~~~~l~l~~v~~lVlDEADrmLd----~Gf~~~i~~I~~-----~~p~~~qtllfSAT~~~~i~~l~~~~l~----~p~~ 232 (513)
T COG0513 166 KRGKLDLSGVETLVLDEADRMLD----MGFIDDIEKILK-----ALPPDRQTLLFSATMPDDIRELARRYLN----DPVE 232 (513)
T ss_pred HcCCcchhhcCEEEeccHhhhhc----CCCHHHHHHHHH-----hCCcccEEEEEecCCCHHHHHHHHHHcc----CCcE
Confidence 334566766665 9999 666555555554 667799999999999 45566665553 5656
Q ss_pred EEecCe-----ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEe
Q psy2470 380 LSVKGH-----LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILP 454 (858)
Q Consensus 380 i~v~g~-----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~ 454 (858)
+.+... ...++++|......+ .+...+..++.....+++|||++|+..++.++..|+.. |+.+..
T Consensus 233 i~v~~~~~~~~~~~i~q~~~~v~~~~---~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~-------g~~~~~ 302 (513)
T COG0513 233 IEVSVEKLERTLKKIKQFYLEVESEE---EKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKR-------GFKVAA 302 (513)
T ss_pred EEEccccccccccCceEEEEEeCCHH---HHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHC-------CCeEEE
Confidence 666521 245667766644322 47778888888877889999999999999999999987 899999
Q ss_pred ccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhccc
Q psy2470 455 MHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRA 534 (858)
Q Consensus 455 LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRa 534 (858)
|||+|+|++|.++++.|++|+.+||||||||+||||||+|++||| || .|.+.++|+||+|||
T Consensus 303 lhG~l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~Vin--------yD----------~p~~~e~yvHRiGRT 364 (513)
T COG0513 303 LHGDLPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVIN--------YD----------LPLDPEDYVHRIGRT 364 (513)
T ss_pred ecCCCCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEE--------cc----------CCCCHHHheeccCcc
Confidence 999999999999999999999999999999999999999999999 88 788999999999999
Q ss_pred CCCCC-ceEEEeh
Q psy2470 535 GRVRS-GHVYRKN 546 (858)
Q Consensus 535 GR~g~-G~~~rL~ 546 (858)
||+|. |.++.++
T Consensus 365 gRaG~~G~ai~fv 377 (513)
T COG0513 365 GRAGRKGVAISFV 377 (513)
T ss_pred ccCCCCCeEEEEe
Confidence 99998 9999999
|
|
| >KOG0328|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-44 Score=361.58 Aligned_cols=325 Identities=12% Similarity=0.187 Sum_probs=244.5
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
.+.++|...+.+++|+..|...+...+++ +++++| ||.||||| ..|..
T Consensus 36 edlLrgiY~yGfekPS~IQqrAi~~IlkG--rdViaQ------------------aqSGTGKT------------a~~si 83 (400)
T KOG0328|consen 36 EDLLRGIYAYGFEKPSAIQQRAIPQILKG--RDVIAQ------------------AQSGTGKT------------ATFSI 83 (400)
T ss_pred HHHHHHHHHhccCCchHHHhhhhhhhhcc--cceEEE------------------ecCCCCce------------EEEEe
Confidence 47899999999999999999999999999 445544 99999999 44555
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE-eeeeeEEEecccee--ecceeEEEeecCccccCC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE-YISRGYMFRKGRMK--ILVSKIFKMSQGKPSDSG 309 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~-~~~vG~~vr~~~~~--~~~t~I~v~TpGrLl~~~ 309 (858)
..++..+.+ ....++||++||||||.|+-+.+ ..+|..++.. +.++|..--+++.+ .-+.|++.+||||++++.
T Consensus 84 ~vlq~~d~~--~r~tQ~lilsPTRELa~Qi~~vi-~alg~~mnvq~hacigg~n~gedikkld~G~hvVsGtPGrv~dmi 160 (400)
T KOG0328|consen 84 SVLQSLDIS--VRETQALILSPTRELAVQIQKVI-LALGDYMNVQCHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMI 160 (400)
T ss_pred eeeeecccc--cceeeEEEecChHHHHHHHHHHH-HHhcccccceEEEEecCCccchhhhhhcccceEeeCCCchHHHHH
Confidence 555555544 33357899999999999996544 5555555544 11133211122211 146799999999999954
Q ss_pred CccCCCcccEEEecCCCCCchhh-hhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee
Q psy2470 310 VEPISQSYLVELSILAPGGQDVI-GEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 310 ~~~~L~~~~vlR~l~~~~~~d~l-l~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
+...|. +.-+.||-.|++++++ .||-.++-+. ....+|+.|++++|||+ ++.+..++|.. +|..+.++...
T Consensus 161 kr~~L~-tr~vkmlVLDEaDemL~kgfk~Qiydi-yr~lp~~~Qvv~~SATlp~eilemt~kfmt----dpvrilvkrde 234 (400)
T KOG0328|consen 161 KRRSLR-TRAVKMLVLDEADEMLNKGFKEQIYDI-YRYLPPGAQVVLVSATLPHEILEMTEKFMT----DPVRILVKRDE 234 (400)
T ss_pred Hhcccc-ccceeEEEeccHHHHHHhhHHHHHHHH-HHhCCCCceEEEEeccCcHHHHHHHHHhcC----CceeEEEecCC
Confidence 444442 2223232222222222 3333333322 22678999999999999 45566677774 45555555433
Q ss_pred cc---eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 387 YP---VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 387 ~~---v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
-+ ++++|... +..+++.+++.++.....-.+.+|||+|++.++.+.+.++.. +|.|.++||+|+|+|
T Consensus 235 ltlEgIKqf~v~v---e~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~-------nftVssmHGDm~qkE 304 (400)
T KOG0328|consen 235 LTLEGIKQFFVAV---EKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-------NFTVSSMHGDMEQKE 304 (400)
T ss_pred Cchhhhhhheeee---chhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhh-------CceeeeccCCcchhH
Confidence 33 45566553 344568899999988888889999999999999999999987 899999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.++++.|+.|+-+||++|||-+||+|+|.|++||| || .|..++.|+||+||+||.|+ |++
T Consensus 305 Rd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviN--------YD----------LP~nre~YIHRIGRSGRFGRkGva 366 (400)
T KOG0328|consen 305 RDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVIN--------YD----------LPNNRELYIHRIGRSGRFGRKGVA 366 (400)
T ss_pred HHHHHHHhhcCCceEEEEechhhccCCcceeEEEEe--------cC----------CCccHHHHhhhhccccccCCcceE
Confidence 999999999999999999999999999999999999 88 88999999999999999998 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
+.+.
T Consensus 367 inFV 370 (400)
T KOG0328|consen 367 INFV 370 (400)
T ss_pred EEEe
Confidence 9988
|
|
| >KOG0333|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-43 Score=381.30 Aligned_cols=293 Identities=16% Similarity=0.159 Sum_probs=219.8
Q ss_pred ccccCCcchhhhhhhhcCcCccccccccc--CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYI--GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l--~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
+|+|||||| +||++|.+.|.-... ...+ -....+.++|++||||+|+||.++- ..+++..|...+.|-.+
T Consensus 288 vaETgsGkt-----aaf~ipLl~~IsslP~~~~~e--n~~~gpyaiilaptReLaqqIeeEt-~kf~~~lg~r~vsvigg 359 (673)
T KOG0333|consen 288 VAETGSGKT-----AAFLIPLLIWISSLPPMARLE--NNIEGPYAIILAPTRELAQQIEEET-NKFGKPLGIRTVSVIGG 359 (673)
T ss_pred EEeccCCcc-----ccchhhHHHHHHcCCCcchhh--hcccCceeeeechHHHHHHHHHHHH-HHhcccccceEEEEecc
Confidence 589999999 999999887764332 1111 1123356899999999999996543 33444444443333334
Q ss_pred Eeccce---eecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhc-ccCC----
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK-PLKR---- 348 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~-~~~~---- 348 (858)
..++.+ .+.+++|++||||||+| + .....|++...+ ||+| ++|-..+.+++. ++- ....
T Consensus 360 ~s~EEq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiD----mgfE~dv~~iL~-~mPssn~k~~td 434 (673)
T KOG0333|consen 360 LSFEEQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMID----MGFEPDVQKILE-QMPSSNAKPDTD 434 (673)
T ss_pred cchhhhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhc----ccccHHHHHHHH-hCCccccCCCcc
Confidence 455544 45789999999999999 3 334456665555 9999 777777776665 221 0011
Q ss_pred --------------CC--ceEEEEeccc--CHHHHHH-HhhcccCCCCcEEEecCeecc---eeEEEecCCccchHHHHH
Q psy2470 349 --------------TQ--LKLIISSATV--DAEEICQ-FYNISASSNATILSVKGHLYP---VSVYYSNDPVVNYVQGVV 406 (858)
Q Consensus 349 --------------~~--~q~il~SAT~--~~~~~~~-~~~~~~~~~~~~i~v~g~~~~---v~~~~~~~~~~~~~~~~~ 406 (858)
.+ +|+++||||| .++.+++ ||. +|.++.+..-..| +++....... +.+.
T Consensus 435 e~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr-----~pv~vtig~~gk~~~rveQ~v~m~~e----d~k~ 505 (673)
T KOG0333|consen 435 EKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLR-----RPVVVTIGSAGKPTPRVEQKVEMVSE----DEKR 505 (673)
T ss_pred chhhHHHHHhhcccccceeEEEEEecCCChHHHHHHHHHhh-----CCeEEEeccCCCCccchheEEEEecc----hHHH
Confidence 11 8999999999 5677876 555 5767766532222 3333222221 2346
Q ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc
Q psy2470 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 407 ~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe 486 (858)
+.|..++.+....++|||+|+++.|+.+++.|.+. |+.+..|||+.+|++|..+++.|++|...|+||||||+
T Consensus 506 kkL~eil~~~~~ppiIIFvN~kk~~d~lAk~LeK~-------g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAg 578 (673)
T KOG0333|consen 506 KKLIEILESNFDPPIIIFVNTKKGADALAKILEKA-------GYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAG 578 (673)
T ss_pred HHHHHHHHhCCCCCEEEEEechhhHHHHHHHHhhc-------cceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 67778887776778999999999999999999988 99999999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||||||||++||| || ++-|.++|.||+|||||+|+ |++++++
T Consensus 579 RGIDIpnVSlVin--------yd----------maksieDYtHRIGRTgRAGk~GtaiSfl 621 (673)
T KOG0333|consen 579 RGIDIPNVSLVIN--------YD----------MAKSIEDYTHRIGRTGRAGKSGTAISFL 621 (673)
T ss_pred cCCCCCccceeee--------cc----------hhhhHHHHHHHhccccccccCceeEEEe
Confidence 9999999999999 77 67788999999999999998 9999999
|
|
| >KOG0338|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=375.33 Aligned_cols=303 Identities=17% Similarity=0.171 Sum_probs=219.6
Q ss_pred HHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccch
Q psy2470 189 LRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSI 255 (858)
Q Consensus 189 ~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~Pt 255 (858)
++++-.+++..| |+|..- .|.|||||| +||.+|.+- +++..|.. ....++||+.||
T Consensus 193 Lka~~~lGy~~PTpIQ~a~IPvallgkDIca~A~TGsGKT-----AAF~lPiLE---RLlYrPk~---~~~TRVLVL~PT 261 (691)
T KOG0338|consen 193 LKACSTLGYKKPTPIQVATIPVALLGKDICACAATGSGKT-----AAFALPILE---RLLYRPKK---VAATRVLVLVPT 261 (691)
T ss_pred HHHHHhcCCCCCCchhhhcccHHhhcchhhheecccCCch-----hhhHHHHHH---HHhcCccc---CcceeEEEEecc
Confidence 455555555555 555432 378999999 999999665 44555542 334468999999
Q ss_pred HHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceee------cceeEEEeecCcccc-CCCcc--CCCcccEE------
Q psy2470 256 DVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEP--ISQSYLVE------ 320 (858)
Q Consensus 256 R~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~--~L~~~~vl------ 320 (858)
||||.|++. |.+.+..-+... ||..+++.+... ..++|+|+|||||+| +.+.+ .|+++.|+
T Consensus 262 RELaiQv~s-V~~qlaqFt~I~---~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEAD 337 (691)
T KOG0338|consen 262 RELAIQVHS-VTKQLAQFTDIT---VGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEAD 337 (691)
T ss_pred HHHHHHHHH-HHHHHHhhccce---eeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHH
Confidence 999999855 333333333333 555555544433 569999999999999 77665 56677777
Q ss_pred EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEec
Q psy2470 321 LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLY---PVSVYYSN 395 (858)
Q Consensus 321 R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~ 395 (858)
|||+ ..|--.+-.++. .+++.+|++|||||| .++.+++.-.+ +|..+.+..... ...+.|..
T Consensus 338 RMLe----egFademnEii~-----lcpk~RQTmLFSATMteeVkdL~slSL~----kPvrifvd~~~~~a~~LtQEFiR 404 (691)
T KOG0338|consen 338 RMLE----EGFADEMNEIIR-----LCPKNRQTMLFSATMTEEVKDLASLSLN----KPVRIFVDPNKDTAPKLTQEFIR 404 (691)
T ss_pred HHHH----HHHHHHHHHHHH-----hccccccceeehhhhHHHHHHHHHhhcC----CCeEEEeCCccccchhhhHHHhe
Confidence 9999 555544444444 678899999999999 67777775442 455566654321 12222221
Q ss_pred C-CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC
Q psy2470 396 D-PVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 396 ~-~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g 474 (858)
. +..+.. .-..+..++.......++||+.|++.+.++.-.|--. |+.+.-|||+|+|.+|..+++.|+++
T Consensus 405 IR~~re~d--Rea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLl-------gl~agElHGsLtQ~QRlesL~kFk~~ 475 (691)
T KOG0338|consen 405 IRPKREGD--REAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLL-------GLKAGELHGSLTQEQRLESLEKFKKE 475 (691)
T ss_pred eccccccc--cHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHh-------hchhhhhcccccHHHHHHHHHHHHhc
Confidence 1 111111 1112233333333567999999999999887666554 89999999999999999999999999
Q ss_pred cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 475 MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 475 ~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.||||||||+|||||++|..||| |+ +|.+.+.|+||+|||+|+|+ |.+++|.
T Consensus 476 eidvLiaTDvAsRGLDI~gV~tVIN--------y~----------mP~t~e~Y~HRVGRTARAGRaGrsVtlv 530 (691)
T KOG0338|consen 476 EIDVLIATDVASRGLDIEGVQTVIN--------YA----------MPKTIEHYLHRVGRTARAGRAGRSVTLV 530 (691)
T ss_pred cCCEEEEechhhccCCccceeEEEe--------cc----------CchhHHHHHHHhhhhhhcccCcceEEEe
Confidence 9999999999999999999999999 87 89999999999999999998 9999999
|
|
| >KOG0923|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=387.28 Aligned_cols=137 Identities=37% Similarity=0.580 Sum_probs=126.6
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
|||||||||...| ..+.+.++|||||+||+++||.||+|||+|+.+||||||||.++|.+|+++|+.|||||..|+||
T Consensus 596 PGKCfRLYt~~aY~~eLE~~t~PEIqRtnL~nvVL~LkSLGI~Dl~~FdFmDpPp~etL~~aLE~LyaLGALn~~GeLT- 674 (902)
T KOG0923|consen 596 PGKCFRLYTAWAYEHELEEMTVPEIQRTNLGNVVLLLKSLGIHDLIHFDFLDPPPTETLLKALEQLYALGALNHLGELT- 674 (902)
T ss_pred CCceEEeechhhhhhhhccCCCcceeeccchhHHHHHHhcCcchhcccccCCCCChHHHHHHHHHHHHhhccccccchh-
Confidence 9999999999999 56999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhcccccch-----------HHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVLDS-----------AVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~~~-----------~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
.+||+||+||+||++||||+.|+...|+ .-..+|+||.++.-.+|.+...|+++..++.
T Consensus 675 k~GrrMaEfP~dPmlsKmi~as~ky~cs~EiitiaamlS~~~svfyrpk~~~v~ad~a~~~f~~~~gDhi 744 (902)
T KOG0923|consen 675 KLGRRMAEFPVDPMLSKMIVASEKYKCSEEIITIAAMLSVGASVFYRPKDKQVHADNARKNFEEPVGDHI 744 (902)
T ss_pred hhhhhhhhcCCCHHHHhHHhhhccccchHHHHHHHHHHhcCchheecchhhhhhhhhhhhccCCCCcchh
Confidence 5999999999999999999999887643 2345789999999999998899998855554
|
|
| >KOG0343|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=374.45 Aligned_cols=320 Identities=15% Similarity=0.197 Sum_probs=253.8
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
.-+.|+.++.+..+...|...|.++|.+.+. +. .|+|||||| +||++|.+....+
T Consensus 79 ~t~kgLke~~fv~~teiQ~~~Ip~aL~G~Dv--lG------------------AAkTGSGKT-----LAFlvPvlE~L~r 133 (758)
T KOG0343|consen 79 KTLKGLKEAKFVKMTEIQRDTIPMALQGHDV--LG------------------AAKTGSGKT-----LAFLVPVLEALYR 133 (758)
T ss_pred HHHHhHhhcCCccHHHHHHhhcchhccCccc--cc------------------ccccCCCce-----eeehHHHHHHHHH
Confidence 3467888888888889999999999999543 21 389999999 9999997765545
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHH---HHHHHhCCcCccEeeeeeE-EEeccceeecceeEEEeecCcccc-C
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVV---EFLTEMGCRMDFEYISRGY-MFRKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~---~v~~e~g~~~g~~~~~vG~-~vr~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
.-+.+.-|.| +||++||||||.|+.+ +|++..+...|.. +|. .+.++.......+|+||||||||+ +
T Consensus 134 ~kWs~~DGlG-----alIISPTRELA~QtFevL~kvgk~h~fSaGLi---iGG~~~k~E~eRi~~mNILVCTPGRLLQHm 205 (758)
T KOG0343|consen 134 LKWSPTDGLG-----ALIISPTRELALQTFEVLNKVGKHHDFSAGLI---IGGKDVKFELERISQMNILVCTPGRLLQHM 205 (758)
T ss_pred cCCCCCCCce-----eEEecchHHHHHHHHHHHHHHhhcccccccee---ecCchhHHHHHhhhcCCeEEechHHHHHHh
Confidence 4444444444 6999999999999976 4555666677777 442 234444444567999999999999 8
Q ss_pred CCccCCC--c--ccEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCc
Q psy2470 309 GVEPISQ--S--YLVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNAT 378 (858)
Q Consensus 309 ~~~~~L~--~--~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~ 378 (858)
..++.++ + +.|+ |+|| ++|--.+-.++. ..|+.+|++|||||- ++..+++.-.. +|.
T Consensus 206 de~~~f~t~~lQmLvLDEADR~LD----MGFk~tL~~Ii~-----~lP~~RQTLLFSATqt~svkdLaRLsL~----dP~ 272 (758)
T KOG0343|consen 206 DENPNFSTSNLQMLVLDEADRMLD----MGFKKTLNAIIE-----NLPKKRQTLLFSATQTKSVKDLARLSLK----DPV 272 (758)
T ss_pred hhcCCCCCCcceEEEeccHHHHHH----HhHHHHHHHHHH-----hCChhheeeeeecccchhHHHHHHhhcC----CCc
Confidence 8888776 3 3344 9999 554444444443 788999999999999 78888887553 666
Q ss_pred EEEecCee-----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE
Q psy2470 379 ILSVKGHL-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL 453 (858)
Q Consensus 379 ~i~v~g~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~ 453 (858)
.+.+.... ....++|...+. +.+++.++..+.++...++|||+.|+.++..+++.+.+. .||+++.
T Consensus 273 ~vsvhe~a~~atP~~L~Q~y~~v~l----~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rl-----rpg~~l~ 343 (758)
T KOG0343|consen 273 YVSVHENAVAATPSNLQQSYVIVPL----EDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRL-----RPGIPLL 343 (758)
T ss_pred EEEEeccccccChhhhhheEEEEeh----hhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhc-----CCCCcee
Confidence 67664221 234556655443 456778888888888889999999999999999999987 4699999
Q ss_pred eccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc
Q psy2470 454 PMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR 533 (858)
Q Consensus 454 ~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR 533 (858)
.|||.|+|..|..+++.|-..+.-|++|||||+||||.|.|++||. || +|.+.++|+||+||
T Consensus 344 ~L~G~~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ--------~D----------CPedv~tYIHRvGR 405 (758)
T KOG0343|consen 344 ALHGTMSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQ--------VD----------CPEDVDTYIHRVGR 405 (758)
T ss_pred eeccchhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEE--------ec----------CchhHHHHHHHhhh
Confidence 9999999999999999998888899999999999999999999999 88 99999999999999
Q ss_pred cCCCCC-ceEEEeh
Q psy2470 534 AGRVRS-GHVYRKN 546 (858)
Q Consensus 534 aGR~g~-G~~~rL~ 546 (858)
++|.+. |.|+-+.
T Consensus 406 tAR~~~~G~sll~L 419 (758)
T KOG0343|consen 406 TARYKERGESLLML 419 (758)
T ss_pred hhcccCCCceEEEE
Confidence 999987 9999766
|
|
| >KOG0922|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=390.26 Aligned_cols=135 Identities=46% Similarity=0.670 Sum_probs=129.3
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
||||||||||++|+.|++.++|||+|+||++++|+||+||++|+.+|||+||||++++..|++.|+.+||||++|+||+|
T Consensus 380 pGkcyRLYte~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~~~~l~~AL~~L~~lgald~~g~lt~p 459 (674)
T KOG0922|consen 380 PGKCYRLYTESAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPPPEALEEALEELYSLGALDDRGKLTSP 459 (674)
T ss_pred CceEEEeeeHHHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCChHHHHHHHHHHHhcCcccCcCCcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhccc-ccCCCCccccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDN-VDSGPETFHDHEM 175 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~-~~~~~~~f~~~e~ 175 (858)
+|++||+||++|.++|||+.|.+++ ++++++.|.||.+.++. ++.++.+|...|=
T Consensus 460 ~G~~ma~~Pl~p~lsk~ll~s~~~gc~~e~l~i~a~Lsv~~~f~~p~~~~~~~a~~~~~kf~~~eG 525 (674)
T KOG0922|consen 460 LGRQMAELPLEPHLSKMLLKSSELGCSEEILTIAAMLSVQSVFSRPKDKKAEDADRKRAKFANPEG 525 (674)
T ss_pred HHhhhhhcCCCcchhhhhhhccccCCcchhhhheeeeeccceecCccchhhhhhhHHHHhhcCccc
Confidence 9999999999999999999999986 46699999999999999 8888888887765
|
|
| >KOG0342|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-41 Score=361.74 Aligned_cols=308 Identities=15% Similarity=0.180 Sum_probs=226.6
Q ss_pred hhHHHHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE
Q psy2470 185 QPLLLRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV 251 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV 251 (858)
.+...++-..|++..| |+|.+. .|+|||||| .||++|.+.+.+...-.+. ....++|
T Consensus 90 S~~t~kAi~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKT-----lAFLiPaie~l~k~~~~~r-----~~~~vlI 159 (543)
T KOG0342|consen 90 SPLTLKAIKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKT-----LAFLLPAIELLRKLKFKPR-----NGTGVLI 159 (543)
T ss_pred CHHHHHHHHhcCccchhHHHHhhcCccCCCccceeeeccCCCce-----eeehhHHHHHHHhcccCCC-----CCeeEEE
Confidence 4566677777777777 776553 489999999 9999998887654322222 2234799
Q ss_pred ccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceee------cceeEEEeecCcccc-CCCccCC----CcccEE
Q psy2470 252 RSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEPIS----QSYLVE 320 (858)
Q Consensus 252 l~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~~L----~~~~vl 320 (858)
++||||||.|++..+-+.+...-+.. ||+.+++.+... ++++|+|||||||+| +++.+.+ .++.|+
T Consensus 160 i~PTRELA~Q~~~eak~Ll~~h~~~~---v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvl 236 (543)
T KOG0342|consen 160 ICPTRELAMQIFAEAKELLKYHESIT---VGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVL 236 (543)
T ss_pred ecccHHHHHHHHHHHHHHHhhCCCcc---eEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEe
Confidence 99999999999776544333222334 555555444322 468999999999999 6665431 245566
Q ss_pred ----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-----cce
Q psy2470 321 ----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-----YPV 389 (858)
Q Consensus 321 ----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-----~~v 389 (858)
|.|+ ++|-.++.+++. ..+..+|+++||||+ .++.++.--.. +++..+.+.... ..+
T Consensus 237 DEADrlLd----~GF~~di~~Ii~-----~lpk~rqt~LFSAT~~~kV~~l~~~~L~---~d~~~v~~~d~~~~~The~l 304 (543)
T KOG0342|consen 237 DEADRLLD----IGFEEDVEQIIK-----ILPKQRQTLLFSATQPSKVKDLARGALK---RDPVFVNVDDGGERETHERL 304 (543)
T ss_pred ecchhhhh----cccHHHHHHHHH-----hccccceeeEeeCCCcHHHHHHHHHhhc---CCceEeecCCCCCcchhhcc
Confidence 9999 555555544444 677899999999999 56677765442 134444443222 224
Q ss_pred eEEEecCCccchHHHHHHHHHHHHhhCCC-CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 390 SVYYSNDPVVNYVQGVVDTAIKIHESMPV-GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~-g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++-|...+.... +..+..+++.... .+|+||++|+..+..+++.|+.. ++.|..+||+++|..|..++
T Consensus 305 ~Qgyvv~~~~~~----f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~-------dlpv~eiHgk~~Q~kRT~~~ 373 (543)
T KOG0342|consen 305 EQGYVVAPSDSR----FSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYI-------DLPVLEIHGKQKQNKRTSTF 373 (543)
T ss_pred cceEEeccccch----HHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhc-------CCchhhhhcCCcccccchHH
Confidence 444554443332 3334444443333 78999999999999999999977 89999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
..|++.+.-|||||||||||+|||+|++||. || .|.++++|+||+|||||.|. |.++-+.
T Consensus 374 ~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ--------~~----------~P~d~~~YIHRvGRTaR~gk~G~alL~l 434 (543)
T KOG0342|consen 374 FEFCKAESGILVCTDVAARGLDIPDVDWVVQ--------YD----------PPSDPEQYIHRVGRTAREGKEGKALLLL 434 (543)
T ss_pred HHHhhcccceEEecchhhccCCCCCceEEEE--------eC----------CCCCHHHHHHHhccccccCCCceEEEEe
Confidence 9999999999999999999999999999999 77 68889999999999999987 9999776
|
|
| >KOG0345|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=357.48 Aligned_cols=330 Identities=18% Similarity=0.173 Sum_probs=236.9
Q ss_pred hHHHHHHHhcCCCCc-cccch------------hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc
Q psy2470 186 PLLLRVRRALDFPDM-PYQLR------------YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR 252 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~-~~~~~------------~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl 252 (858)
++...+-+.++++.| |.|.. +-|.|||||| +||++|.+-...+ ...+.-.+ ...+||+
T Consensus 15 ~~l~~~l~~~GF~~mTpVQa~tIPlll~~KDVvveavTGSGKT-----lAFllP~le~i~r--r~~~~~~~--~vgalII 85 (567)
T KOG0345|consen 15 PWLLEALDESGFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKT-----LAFLLPMLEIIYR--REAKTPPG--QVGALII 85 (567)
T ss_pred HHHHHHHHhcCCcccCHHHHhhhHHHhcCCceEEEcCCCCCch-----hhHHHHHHHHHHh--hccCCCcc--ceeEEEe
Confidence 444556677777777 77754 3489999999 8888886653222 11111111 2457999
Q ss_pred cchHHHHHHHHHH---HHHH-hCCcCccEeeeeeEEEecccee---ecceeEEEeecCcccc-CCCc-cCCC--cccEE-
Q psy2470 253 SSIDVACSCTVVE---FLTE-MGCRMDFEYISRGYMFRKGRMK---ILVSKIFKMSQGKPSD-SGVE-PISQ--SYLVE- 320 (858)
Q Consensus 253 ~PtR~la~qva~~---v~~e-~g~~~g~~~~~vG~~vr~~~~~---~~~t~I~v~TpGrLl~-~~~~-~~L~--~~~vl- 320 (858)
+||||||.||.+. +.+. ...+.... ||...-.++.. .++++|+|||||||+| ++.. ..++ +.+++
T Consensus 86 sPTRELa~QI~~V~~~F~~~l~~l~~~l~---vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LV 162 (567)
T KOG0345|consen 86 SPTRELARQIREVAQPFLEHLPNLNCELL---VGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILV 162 (567)
T ss_pred cCcHHHHHHHHHHHHHHHHhhhccceEEE---ecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEE
Confidence 9999999998543 2232 23333344 45432222322 2678999999999999 4442 2333 55555
Q ss_pred -----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cc--
Q psy2470 321 -----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL---YP-- 388 (858)
Q Consensus 321 -----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~-- 388 (858)
|.+| |||.+.+..+| ..+|+.+++-|||||. .++.+...... ||..+.|.... -|
T Consensus 163 LDEADrLld--------mgFe~~~n~IL-s~LPKQRRTGLFSATq~~~v~dL~raGLR----Npv~V~V~~k~~~~tPS~ 229 (567)
T KOG0345|consen 163 LDEADRLLD--------MGFEASVNTIL-SFLPKQRRTGLFSATQTQEVEDLARAGLR----NPVRVSVKEKSKSATPSS 229 (567)
T ss_pred ecchHhHhc--------ccHHHHHHHHH-HhcccccccccccchhhHHHHHHHHhhcc----CceeeeecccccccCchh
Confidence 9999 55555554333 3788899999999999 67778776664 66666665443 23
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
+..+|..... +.+...+++++.+...+++|||++|+..++.....+... .++..++++||.|+|.+|.+++
T Consensus 230 L~~~Y~v~~a----~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~-----l~~~~i~~iHGK~~q~~R~k~~ 300 (567)
T KOG0345|consen 230 LALEYLVCEA----DEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRL-----LKKREIFSIHGKMSQKARAKVL 300 (567)
T ss_pred hcceeeEecH----HHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHH-----hCCCcEEEecchhcchhHHHHH
Confidence 5566665432 345666777777777889999999999999999999876 2478999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh-
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN- 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~- 546 (858)
+.|++....|++|||||+||||||||++||. || .|-+.++++||+|||||.|+ |.++.+.
T Consensus 301 ~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ--------~D----------pP~~~~~FvHR~GRTaR~gr~G~Aivfl~ 362 (567)
T KOG0345|consen 301 EAFRKLSNGVLFCTDVAARGLDIPGIDLVVQ--------FD----------PPKDPSSFVHRCGRTARAGREGNAIVFLN 362 (567)
T ss_pred HHHHhccCceEEeehhhhccCCCCCceEEEe--------cC----------CCCChhHHHhhcchhhhccCccceEEEec
Confidence 9999988999999999999999999999999 88 56778889999999999998 9988777
Q ss_pred ---hhHhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 547 ---FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 547 ---~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
++|-.+-. =+ +.|++.+....
T Consensus 363 p~E~aYveFl~----i~------~~v~le~~~~e 386 (567)
T KOG0345|consen 363 PREEAYVEFLR----IK------GKVELERIDTE 386 (567)
T ss_pred ccHHHHHHHHH----hc------Cccchhhhccc
Confidence 55543332 02 23776666655
|
|
| >KOG0326|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=339.58 Aligned_cols=317 Identities=13% Similarity=0.158 Sum_probs=242.3
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
.+.+.|..+...++|+++|+..+...|.+.+ .++ -|++||||| +||.+|.+..
T Consensus 94 r~LLmgIfe~G~ekPSPiQeesIPiaLtGrd--iLa------------------RaKNGTGKT-----~a~~IP~Lek-- 146 (459)
T KOG0326|consen 94 RELLMGIFEKGFEKPSPIQEESIPIALTGRD--ILA------------------RAKNGTGKT-----AAYCIPVLEK-- 146 (459)
T ss_pred HHHHHHHHHhccCCCCCccccccceeecchh--hhh------------------hccCCCCCc-----cceechhhhh--
Confidence 3778899999999999999999999999843 221 289999999 9999996652
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEe-eeeeEEEecccee--ecceeEEEeecCccccCC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEY-ISRGYMFRKGRMK--ILVSKIFKMSQGKPSDSG 309 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~-~~vG~~vr~~~~~--~~~t~I~v~TpGrLl~~~ 309 (858)
.+ ..+...+++|+.||||+|.|+.+ +.++++..+|... +.+|...-.++.. ....|++|+||||++|+.
T Consensus 147 -----id--~~~~~IQ~~ilVPtrelALQtSq-vc~~lskh~~i~vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~ 218 (459)
T KOG0326|consen 147 -----ID--PKKNVIQAIILVPTRELALQTSQ-VCKELSKHLGIKVMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLA 218 (459)
T ss_pred -----cC--ccccceeEEEEeecchhhHHHHH-HHHHHhcccCeEEEEecCCcccccceeeecCceEEEEcCChhHHHHH
Confidence 12 22345688999999999977633 3345554444330 0133222222221 255799999999999933
Q ss_pred C--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 310 V--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 310 ~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
+ -..+++..++ .+|+ .||-..+.+.+. ..|+++|+++||||+ .+..|.+.+.. +|-.
T Consensus 219 ~KgVa~ls~c~~lV~DEADKlLs----~~F~~~~e~li~-----~lP~~rQillySATFP~tVk~Fm~~~l~----kPy~ 285 (459)
T KOG0326|consen 219 KKGVADLSDCVILVMDEADKLLS----VDFQPIVEKLIS-----FLPKERQILLYSATFPLTVKGFMDRHLK----KPYE 285 (459)
T ss_pred hcccccchhceEEEechhhhhhc----hhhhhHHHHHHH-----hCCccceeeEEecccchhHHHHHHHhcc----Ccce
Confidence 3 3466666665 7788 777666655555 789999999999999 56777765553 4555
Q ss_pred EEecCee--cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 380 LSVKGHL--YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 380 i~v~g~~--~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
|..-... ..|.+||........ +..+..+.....-.+.+||||+...+|.+|+.+.+. |+++..+|+
T Consensus 286 INLM~eLtl~GvtQyYafV~e~qK----vhCLntLfskLqINQsIIFCNS~~rVELLAkKITel-------GyscyyiHa 354 (459)
T KOG0326|consen 286 INLMEELTLKGVTQYYAFVEERQK----VHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITEL-------GYSCYYIHA 354 (459)
T ss_pred eehhhhhhhcchhhheeeechhhh----hhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhc-------cchhhHHHH
Confidence 5443322 457788877655443 333444444455678999999999999999999988 999999999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
.|.|+.|.+||..|++|..+.+||||+.-|||||+.|.+||| || .|-+.++|.||+||+||.
T Consensus 355 kM~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVIN--------FD----------fpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 355 KMAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVIN--------FD----------FPKNAETYLHRIGRSGRF 416 (459)
T ss_pred HHHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEe--------cC----------CCCCHHHHHHHccCCccC
Confidence 999999999999999999999999999999999999999999 66 677889999999999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|. |.++.|.
T Consensus 417 GhlGlAInLi 426 (459)
T KOG0326|consen 417 GHLGLAINLI 426 (459)
T ss_pred CCcceEEEEE
Confidence 98 9999998
|
|
| >KOG0340|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=340.32 Aligned_cols=308 Identities=17% Similarity=0.209 Sum_probs=216.9
Q ss_pred hhHHHHHHHhcCCCCc-cccchh------------ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE
Q psy2470 185 QPLLLRVRRALDFPDM-PYQLRY------------IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV 251 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~-~~~~~~------------~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV 251 (858)
.+|+..-++.|+...+ |+|..- .|+|||||| +||.+|.+... - .+ .-..+++|
T Consensus 15 ~~Wlve~l~~l~i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT-----~AFaLPil~rL---s--ed----P~giFalv 80 (442)
T KOG0340|consen 15 SPWLVEQLKALGIKKPTPIQQACIPKILEGRDCIGCAKTGSGKT-----AAFALPILNRL---S--ED----PYGIFALV 80 (442)
T ss_pred cHHHHHHHHHhcCCCCCchHhhhhHHHhcccccccccccCCCcc-----hhhhHHHHHhh---c--cC----CCcceEEE
Confidence 4666666677766665 666542 489999999 99999966521 1 11 12357899
Q ss_pred ccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce------eecceeEEEeecCcccc-CCCcc-----CCCc--c
Q psy2470 252 RSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGVEP-----ISQS--Y 317 (858)
Q Consensus 252 l~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~~~-----~L~~--~ 317 (858)
++||||+|.|+++++. .+|..++.. +...+++.++ .+..+|+++||||||-+ +.+++ .+++ |
T Consensus 81 lTPTrELA~QiaEQF~-alGk~l~lK---~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkf 156 (442)
T KOG0340|consen 81 LTPTRELALQIAEQFI-ALGKLLNLK---VSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKF 156 (442)
T ss_pred ecchHHHHHHHHHHHH-Hhcccccce---EEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCccchhhhhceee
Confidence 9999999999999984 445555444 3333344333 34679999999999999 66663 2333 4
Q ss_pred cEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCC-CCcEEEecCeeccee--
Q psy2470 318 LVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASS-NATILSVKGHLYPVS-- 390 (858)
Q Consensus 318 ~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~-~~~~i~v~g~~~~v~-- 390 (858)
.|+ |+++ .+|-..+..... ..|+.+|+++||||+. +.+.+.++....+ -+-.+++......++
T Consensus 157 lVlDEADrvL~----~~f~d~L~~i~e-----~lP~~RQtLlfSATit-d~i~ql~~~~i~k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340|consen 157 LVLDEADRVLA----GCFPDILEGIEE-----CLPKPRQTLLFSATIT-DTIKQLFGCPITKSIAFELEVIDGVSTVETL 226 (442)
T ss_pred EEecchhhhhc----cchhhHHhhhhc-----cCCCccceEEEEeehh-hHHHHhhcCCcccccceEEeccCCCCchhhh
Confidence 444 8888 555433333333 6677799999999993 1223333311000 122222211112233
Q ss_pred -EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcC
Q psy2470 391 -VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFR 469 (858)
Q Consensus 391 -~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~ 469 (858)
+.|...+.... +.-+--++...++++.++++||++++.+++.++..|+.. ++.+..|||.|+|.+|..++.
T Consensus 227 ~q~yI~~~~~vk-daYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~l-------e~r~~~lHs~m~Q~eR~~aLs 298 (442)
T KOG0340|consen 227 YQGYILVSIDVK-DAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNL-------EVRVVSLHSQMPQKERLAALS 298 (442)
T ss_pred hhheeecchhhh-HHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhh-------ceeeeehhhcchHHHHHHHHH
Confidence 23333222111 111111222334446799999999999999999999988 999999999999999999999
Q ss_pred CCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 470 PTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 470 ~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+++..+||+|||||+||+|||.|..||| || .|.++.+|+||+|||+|+|+ |.+++++
T Consensus 299 rFrs~~~~iliaTDVAsRGLDIP~V~LVvN--------~d----------iPr~P~~yiHRvGRtARAGR~G~aiSiv 358 (442)
T KOG0340|consen 299 RFRSNAARILIATDVASRGLDIPTVELVVN--------HD----------IPRDPKDYIHRVGRTARAGRKGMAISIV 358 (442)
T ss_pred HHhhcCccEEEEechhhcCCCCCceeEEEe--------cC----------CCCCHHHHHHhhcchhcccCCcceEEEe
Confidence 999999999999999999999999999999 88 88999999999999999998 9999988
|
|
| >KOG0336|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-40 Score=344.04 Aligned_cols=332 Identities=15% Similarity=0.099 Sum_probs=246.8
Q ss_pred cchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcC
Q psy2470 145 LDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALD 224 (858)
Q Consensus 145 ~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~ 224 (858)
|+.+.+..-+.+..+....+++|.+++-+.-...|.+.+-. .+|||||||| +||+
T Consensus 221 FddAFq~~pevmenIkK~GFqKPtPIqSQaWPI~LQG~Dli--------------------GVAQTgtgKt-----L~~L 275 (629)
T KOG0336|consen 221 FDDAFQCYPEVMENIKKTGFQKPTPIQSQAWPILLQGIDLI--------------------GVAQTGTGKT-----LAFL 275 (629)
T ss_pred HHHHHhhhHHHHHHHHhccCCCCCcchhcccceeecCcceE--------------------EEEecCCCcC-----HHHh
Confidence 45566666677888899999999999888888777774321 2599999999 6677
Q ss_pred cCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC--CcCccEeeeeeEEEeccc--eeecceeEEEe
Q psy2470 225 FPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG--CRMDFEYISRGYMFRKGR--MKILVSKIFKM 300 (858)
Q Consensus 225 lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g--~~~g~~~~~vG~~vr~~~--~~~~~t~I~v~ 300 (858)
+|.+.+.. .|+..-.....+.+||++||||||.|+-..+.++.- .+.... .|.+-|.+. ....+.+|+++
T Consensus 276 ~pg~ihi~---aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyng~ksvc~---ygggnR~eqie~lkrgveiiia 349 (629)
T KOG0336|consen 276 LPGFIHID---AQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYNGLKSVCV---YGGGNRNEQIEDLKRGVEIIIA 349 (629)
T ss_pred ccceeeee---ccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhcCcceEEE---ecCCCchhHHHHHhcCceEEee
Confidence 77665432 222211123345689999999999999777766543 332223 222223222 22357899999
Q ss_pred ecCccccC-C-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhh
Q psy2470 301 SQGKPSDS-G-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 301 TpGrLl~~-~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
|||||.++ + +-..|.++.++ |||| ++|...+.|.+. -.||++|+++.|||+ .+.+++..+.
T Consensus 350 tPgrlndL~~~n~i~l~siTYlVlDEADrMLD----MgFEpqIrkill-----diRPDRqtvmTSATWP~~VrrLa~sY~ 420 (629)
T KOG0336|consen 350 TPGRLNDLQMDNVINLASITYLVLDEADRMLD----MGFEPQIRKILL-----DIRPDRQTVMTSATWPEGVRRLAQSYL 420 (629)
T ss_pred CCchHhhhhhcCeeeeeeeEEEEecchhhhhc----ccccHHHHHHhh-----hcCCcceeeeecccCchHHHHHHHHhh
Confidence 99999993 3 33466655544 9999 888888888888 789999999999999 5788887666
Q ss_pred cccCCCCcEEEecCee-----cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccC
Q psy2470 371 ISASSNATILSVKGHL-----YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQ 444 (858)
Q Consensus 371 ~~~~~~~~~i~v~g~~-----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~ 444 (858)
+.|++..-|.. ..|++.+......+ ++..+..+..++ +..++||||..+.-++.|..-+.-.
T Consensus 421 -----Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~----k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~--- 488 (629)
T KOG0336|consen 421 -----KEPMIVYVGSLDLVAVKSVKQNIIVTTDSE----KLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLK--- 488 (629)
T ss_pred -----hCceEEEecccceeeeeeeeeeEEecccHH----HHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhc---
Confidence 34555544443 45666554333332 334444444443 2467999999999888887766643
Q ss_pred CCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCH
Q psy2470 445 REDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISK 524 (858)
Q Consensus 445 ~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~ 524 (858)
|+.+-.|||+-.|.+|+++++.|+.|.++||||||+|+||||+|||+||+| || .|-..
T Consensus 489 ----gi~~q~lHG~r~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~N--------yD----------FP~nI 546 (629)
T KOG0336|consen 489 ----GISSQSLHGNREQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYN--------YD----------FPRNI 546 (629)
T ss_pred ----ccchhhccCChhhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeec--------cC----------CCccH
Confidence 899999999999999999999999999999999999999999999999999 88 78889
Q ss_pred hhHHHhhcccCCCCC-ceEEEeh--hhHh
Q psy2470 525 ASAVQRAGRAGRVRS-GHVYRKN--FMYN 550 (858)
Q Consensus 525 ~~~~qR~GRaGR~g~-G~~~rL~--~~~~ 550 (858)
++|+||+||+||+|+ |.+++++ .++.
T Consensus 547 eeYVHRvGrtGRaGr~G~sis~lt~~D~~ 575 (629)
T KOG0336|consen 547 EEYVHRVGRTGRAGRTGTSISFLTRNDWS 575 (629)
T ss_pred HHHHHHhcccccCCCCcceEEEEehhhHH
Confidence 999999999999998 9999887 5554
|
|
| >KOG0332|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=342.91 Aligned_cols=323 Identities=14% Similarity=0.147 Sum_probs=252.6
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
+.+.|+....+++|.++|+......|..++.+.++| +|.||||| +||.|.
T Consensus 100 ellkgly~M~F~kPskIQe~aLPlll~~Pp~nlIaQ------------------sqsGtGKT-----aaFvL~------- 149 (477)
T KOG0332|consen 100 ELLKGLYAMKFQKPSKIQETALPLLLAEPPQNLIAQ------------------SQSGTGKT-----AAFVLT------- 149 (477)
T ss_pred HHHhHHHHhccCCcchHHHhhcchhhcCCchhhhhh------------------hcCCCchh-----HHHHHH-------
Confidence 567888888899999999999999999998888887 99999999 555554
Q ss_pred ccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeec---ceeEEEeecCcccc-CC
Q psy2470 234 YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKIL---VSKIFKMSQGKPSD-SG 309 (858)
Q Consensus 234 ~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~---~t~I~v~TpGrLl~-~~ 309 (858)
++.+.+.. ...+++++++||||+|.|+.+ |..+||...+.+ ..|.++....... ..+|+++|||.++| +.
T Consensus 150 MLsrvd~~--~~~PQ~iCLaPtrELA~Q~~e-Vv~eMGKf~~it---a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~ 223 (477)
T KOG0332|consen 150 MLSRVDPD--VVVPQCICLAPTRELAPQTGE-VVEEMGKFTELT---ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLML 223 (477)
T ss_pred HHHhcCcc--ccCCCceeeCchHHHHHHHHH-HHHHhcCceeee---EEEEecCcccccCCcchhheeeCCCccHHHHHH
Confidence 44444432 334567999999999999966 558999988877 8999988744332 25899999999999 33
Q ss_pred C--ccCCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcE
Q psy2470 310 V--EPISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATI 379 (858)
Q Consensus 310 ~--~~~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~ 379 (858)
. -..+..+. ++ -|++. ++|-..-.+... ..+++.|+++||||+ .+..|+..+.. ++.+
T Consensus 224 klk~id~~kikvfVlDEAD~Mi~t---qG~~D~S~rI~~-----~lP~~~QllLFSATf~e~V~~Fa~kivp----n~n~ 291 (477)
T KOG0332|consen 224 KLKCIDLEKIKVFVLDEADVMIDT---QGFQDQSIRIMR-----SLPRNQQLLLFSATFVEKVAAFALKIVP----NANV 291 (477)
T ss_pred HHHhhChhhceEEEecchhhhhhc---ccccccchhhhh-----hcCCcceEEeeechhHHHHHHHHHHhcC----CCce
Confidence 2 22333444 33 56661 122233333333 556799999999999 46677776664 5666
Q ss_pred EEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc
Q psy2470 380 LSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH 456 (858)
Q Consensus 380 i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH 456 (858)
+.+..+. ++|.++|...... +.+.+.+.++.....-|+.+|||.|+..+.+++..|... |..|..||
T Consensus 292 i~Lk~eel~L~~IkQlyv~C~~~---~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~-------Gh~V~~l~ 361 (477)
T KOG0332|consen 292 IILKREELALDNIKQLYVLCACR---DDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAE-------GHQVSLLH 361 (477)
T ss_pred eeeehhhccccchhhheeeccch---hhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhc-------CceeEEee
Confidence 6665443 6777888765544 346666777776666899999999999999999999977 99999999
Q ss_pred CCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCC
Q psy2470 457 GSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGR 536 (858)
Q Consensus 457 g~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR 536 (858)
|+|.-++|.++++.|+.|+-||||+|||.+||||++.|++|||+++|-. |+ ---+.+.|.||+|||||
T Consensus 362 G~l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~--~~----------~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 362 GDLTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVK--YT----------GEPDYETYLHRIGRTGR 429 (477)
T ss_pred ccchhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccc--cC----------CCCCHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999666544 33 11468899999999999
Q ss_pred CCC-ceEEEeh
Q psy2470 537 VRS-GHVYRKN 546 (858)
Q Consensus 537 ~g~-G~~~rL~ 546 (858)
.|+ |.+|.+.
T Consensus 430 FGkkG~a~n~v 440 (477)
T KOG0332|consen 430 FGKKGLAINLV 440 (477)
T ss_pred ccccceEEEee
Confidence 998 9999988
|
|
| >KOG0924|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=371.74 Aligned_cols=137 Identities=38% Similarity=0.602 Sum_probs=132.5
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||.|||||||+.| ++|.+.|+|||||+||+++||+||+|||+|+.+||||||||.+.|.+|+..|+.|||+|..|.||
T Consensus 687 pG~cYRlYTe~ay~~eml~stvPEIqRTNl~nvVLlLkslgV~dll~FdFmD~Pped~~~~sly~Lw~LGAl~~~g~LT- 765 (1042)
T KOG0924|consen 687 PGTCYRLYTEDAYKNEMLPSTVPEIQRTNLSNVVLLLKSLGVDDLLKFDFMDPPPEDNLLNSLYQLWTLGALDNTGQLT- 765 (1042)
T ss_pred CcceeeehhhhHHHhhcccCCCchhhhcchhhHHHHHHhcChhhhhCCCcCCCCHHHHHHHHHHHHHHhhccccCCccc-
Confidence 9999999999999 78999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
|+|++|++||+||.+|||||.+.+++ +++++..|+||.+..+.++.++++|+.++.++.
T Consensus 766 ~lG~~MvefpLDP~lsKmll~a~~~Gc~dEilsIvSmLSvp~VF~rpker~eead~ar~Kf~~~~sDhL 834 (1042)
T KOG0924|consen 766 PLGRKMVEFPLDPPLSKMLLMAARMGCSDEILSIVSMLSVPAVFYRPKEREEEADAAREKFQVPESDHL 834 (1042)
T ss_pred hhhHHhhhCCCCchHHHHHHHHhccCcHHHHHHHHHHhcccceeeccccchhhhhhHHhhhcCCCCchh
Confidence 89999999999999999999999887 467888999999999999999999999998876
|
|
| >KOG0339|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=343.82 Aligned_cols=289 Identities=17% Similarity=0.158 Sum_probs=213.7
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH---HHHHHhCCcCccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV---EFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~---~v~~e~g~~~g~~~~~vG 282 (858)
-+|.|||||| +||..|.+.. ++.|++.-.|+. +..++++||||+|.||.. .+.+..|+++...|||-.
T Consensus 265 gIAktgSgkt-----aAfi~pm~~h---imdq~eL~~g~g-Pi~vilvPTrela~Qi~~eaKkf~K~ygl~~v~~ygGgs 335 (731)
T KOG0339|consen 265 GIAKTGSGKT-----AAFIWPMIVH---IMDQPELKPGEG-PIGVILVPTRELASQIFSEAKKFGKAYGLRVVAVYGGGS 335 (731)
T ss_pred heeeccCcch-----hHHHHHHHHH---hcchhhhcCCCC-CeEEEEeccHHHHHHHHHHHHHhhhhccceEEEeecCCc
Confidence 3799999999 8888887664 455666544443 467999999999999844 444555555544433332
Q ss_pred EEEeccceeecceeEEEeecCcccc--CCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
-.-+... ...++.|+|||||||++ .++..++.+++++ ||++ ++|.-.+..+. ...|+++|++
T Consensus 336 k~eQ~k~-Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfd----mGfe~qVrSI~-----~hirpdrQtl 405 (731)
T KOG0339|consen 336 KWEQSKE-LKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFD----MGFEPQVRSIK-----QHIRPDRQTL 405 (731)
T ss_pred HHHHHHh-hhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhc----cccHHHHHHHH-----hhcCCcceEE
Confidence 1111111 22679999999999999 4666677766655 9999 55555544444 4889999999
Q ss_pred EEeccc--CHHHHHHHhhcccCCCCcEEEecCee----cceeE-EEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 355 ISSATV--DAEEICQFYNISASSNATILSVKGHL----YPVSV-YYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 355 l~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~----~~v~~-~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
+||||+ .++++++-+.. .|+-.+.|.. .-+++ .+...... .....++.++......|++|+|++.
T Consensus 406 lFsaTf~~kIe~lard~L~-----dpVrvVqg~vgean~dITQ~V~V~~s~~---~Kl~wl~~~L~~f~S~gkvlifVTK 477 (731)
T KOG0339|consen 406 LFSATFKKKIEKLARDILS-----DPVRVVQGEVGEANEDITQTVSVCPSEE---KKLNWLLRHLVEFSSEGKVLIFVTK 477 (731)
T ss_pred EeeccchHHHHHHHHHHhc-----CCeeEEEeehhccccchhheeeeccCcH---HHHHHHHHHhhhhccCCcEEEEEec
Confidence 999999 78888887763 4544444321 11111 12111111 1222334445555567999999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee
Q psy2470 428 LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW 507 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~ 507 (858)
+.+++.++..|.-. ++.|..|||+|.|.+|.+++..|+.+...|+||||||+||+|||++..|||
T Consensus 478 k~~~e~i~a~Lklk-------~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvn-------- 542 (731)
T KOG0339|consen 478 KADAEEIAANLKLK-------GFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVN-------- 542 (731)
T ss_pred cCCHHHHHHHhccc-------cceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeec--------
Confidence 99999999999865 899999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 508 FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 508 yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .--+.+.+.||+||+||+|. |++|+|.
T Consensus 543 yD----------~ardIdththrigrtgRag~kGvayTlv 572 (731)
T KOG0339|consen 543 YD----------FARDIDTHTHRIGRTGRAGEKGVAYTLV 572 (731)
T ss_pred cc----------ccchhHHHHHHhhhcccccccceeeEEe
Confidence 77 44566788899999999998 9999999
|
|
| >PTZ00110 helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=362.99 Aligned_cols=286 Identities=16% Similarity=0.123 Sum_probs=200.7
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
+|+|||||| +||.+|.+.... .++.... ...+.+||++||||||.|+.+.+ +.++...+.. +....+
T Consensus 173 ~ApTGSGKT-----laylLP~l~~i~---~~~~~~~-~~gp~~LIL~PTreLa~Qi~~~~-~~~~~~~~i~---~~~~~g 239 (545)
T PTZ00110 173 IAETGSGKT-----LAFLLPAIVHIN---AQPLLRY-GDGPIVLVLAPTRELAEQIREQC-NKFGASSKIR---NTVAYG 239 (545)
T ss_pred EeCCCChHH-----HHHHHHHHHHHH---hcccccC-CCCcEEEEECChHHHHHHHHHHH-HHHhcccCcc---EEEEeC
Confidence 699999999 666677554321 1111111 12346899999999999997765 3444333332 111111
Q ss_pred ccc------eeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 287 KGR------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 287 ~~~------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.. ....+++|+|+|||||++ +.. ...+.++.+| |+++ ++|...+.+.+. ..++++|
T Consensus 240 g~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld----~gf~~~i~~il~-----~~~~~~q 310 (545)
T PTZ00110 240 GVPKRGQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLD----MGFEPQIRKIVS-----QIRPDRQ 310 (545)
T ss_pred CCCHHHHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhh----cchHHHHHHHHH-----hCCCCCe
Confidence 111 112457999999999999 433 3456666655 8999 666666655555 5678999
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe----ecceeEEEecCCccchHHHHHHHHHHHHhhC--CCCCEEEE
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGH----LYPVSVYYSNDPVVNYVQGVVDTAIKIHESM--PVGDILAF 424 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~----~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVF 424 (858)
+++||||+ +++.+++.+... ++..+.+... ...+++.+......+ +...+..++... ..+++|||
T Consensus 311 ~l~~SAT~p~~v~~l~~~l~~~---~~v~i~vg~~~l~~~~~i~q~~~~~~~~~----k~~~L~~ll~~~~~~~~k~LIF 383 (545)
T PTZ00110 311 TLMWSATWPKEVQSLARDLCKE---EPVHVNVGSLDLTACHNIKQEVFVVEEHE----KRGKLKMLLQRIMRDGDKILIF 383 (545)
T ss_pred EEEEEeCCCHHHHHHHHHHhcc---CCEEEEECCCccccCCCeeEEEEEEechh----HHHHHHHHHHHhcccCCeEEEE
Confidence 99999999 456677655421 2333333211 122333222211111 222233333221 46799999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVK 504 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k 504 (858)
|++++.++.+++.|+.. ++.+..+||++++++|..+++.|++|+.+||||||+|+||||||+|++|||
T Consensus 384 ~~t~~~a~~l~~~L~~~-------g~~~~~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~----- 451 (545)
T PTZ00110 384 VETKKGADFLTKELRLD-------GWPALCIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVIN----- 451 (545)
T ss_pred ecChHHHHHHHHHHHHc-------CCcEEEEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEE-----
Confidence 99999999999999866 888999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 505 ARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 505 ~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .|-+.++|+||+|||||.|. |.||.++
T Consensus 452 ---~d----------~P~s~~~yvqRiGRtGR~G~~G~ai~~~ 481 (545)
T PTZ00110 452 ---FD----------FPNQIEDYVHRIGRTGRAGAKGASYTFL 481 (545)
T ss_pred ---eC----------CCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 77 68889999999999999987 9999999
|
|
| >KOG0335|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-38 Score=345.82 Aligned_cols=327 Identities=15% Similarity=0.111 Sum_probs=224.9
Q ss_pred cccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc--ccCC
Q psy2470 160 CDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR--YIGQ 237 (858)
Q Consensus 160 ~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~--~l~~ 237 (858)
...-..+|...|.+.+.-...+..- . ..|||||||| +||++|.+-+.++ +...
T Consensus 90 ~~~~~~~ptpvQk~sip~i~~Grdl--~------------------acAqTGsGKT-----~aFLiPii~~~~~~~~~~~ 144 (482)
T KOG0335|consen 90 KRSGYTKPTPVQKYSIPIISGGRDL--M------------------ACAQTGSGKT-----AAFLIPIISYLLDEGPEDR 144 (482)
T ss_pred ccccccCCCcceeeccceeecCCce--E------------------EEccCCCcch-----HHHHHHHHHHHHhcCcccC
Confidence 3334456888888877766665321 1 2599999999 9999997765543 2222
Q ss_pred CCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC---cCccEeeeeeEEEeccceeecceeEEEeecCcccc--CCCcc
Q psy2470 238 PEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC---RMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEP 312 (858)
Q Consensus 238 ~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~---~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~ 312 (858)
...+ +...+.+||++||||||.|+.++..+-.+. +....|++.-+.. .......+.+|+|||||||.+ ..+..
T Consensus 145 ~~~~-~~~~P~~lIlapTReL~~Qi~nea~k~~~~s~~~~~~~ygg~~~~~-q~~~~~~gcdIlvaTpGrL~d~~e~g~i 222 (482)
T KOG0335|consen 145 GESG-GGVYPRALILAPTRELVDQIYNEARKFSYLSGMKSVVVYGGTDLGA-QLRFIKRGCDILVATPGRLKDLIERGKI 222 (482)
T ss_pred cccC-CCCCCceEEEeCcHHHhhHHHHHHHhhcccccceeeeeeCCcchhh-hhhhhccCccEEEecCchhhhhhhccee
Confidence 2221 113466899999999999998887655433 3333332211111 111222568999999999999 33444
Q ss_pred CCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 313 ISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 313 ~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
.|+... || ||+| .++|...+.+++. +........+|++|||||+ +++.++.+|..+...--.+-.+.+
T Consensus 223 ~l~~~k~~vLDEADrMlD---~mgF~p~Ir~iv~-~~~~~~~~~~qt~mFSAtfp~~iq~l~~~fl~~~yi~laV~rvg~ 298 (482)
T KOG0335|consen 223 SLDNCKFLVLDEADRMLD---EMGFEPQIRKIVE-QLGMPPKNNRQTLLFSATFPKEIQRLAADFLKDNYIFLAVGRVGS 298 (482)
T ss_pred ehhhCcEEEecchHHhhh---hccccccHHHHhc-ccCCCCccceeEEEEeccCChhhhhhHHHHhhccceEEEEeeecc
Confidence 565444 44 9998 2455555555544 2221223479999999999 667788777742100001112222
Q ss_pred eecceeEEEecCCccchHHHHHHHHHHHHhhCC----CC-----CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 385 HLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMP----VG-----DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 385 ~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~----~g-----~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
....+.+........+ +...+++++.... .+ .++|||.|++.++.++..|... ++++.++
T Consensus 299 ~~~ni~q~i~~V~~~~----kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~-------~~~~~sI 367 (482)
T KOG0335|consen 299 TSENITQKILFVNEME----KRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSN-------GYPAKSI 367 (482)
T ss_pred ccccceeEeeeecchh----hHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcC-------CCCceee
Confidence 2233433333322222 2233444443222 34 7999999999999999999977 8999999
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
||+.+|.+|.++++.|++|+..|+||||||+||||||+|+|||| || +|....+|+||+||||
T Consensus 368 hg~~tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVIn--------yD----------mP~d~d~YvHRIGRTG 429 (482)
T KOG0335|consen 368 HGDRTQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVIN--------YD----------MPADIDDYVHRIGRTG 429 (482)
T ss_pred cchhhhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEE--------ee----------cCcchhhHHHhccccc
Confidence 99999999999999999999999999999999999999999999 88 7888899999999999
Q ss_pred CCCC-ceEEEeh
Q psy2470 536 RVRS-GHVYRKN 546 (858)
Q Consensus 536 R~g~-G~~~rL~ 546 (858)
|.|. |.+..|+
T Consensus 430 R~Gn~G~atsf~ 441 (482)
T KOG0335|consen 430 RVGNGGRATSFF 441 (482)
T ss_pred cCCCCceeEEEe
Confidence 9998 9999998
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-38 Score=361.90 Aligned_cols=306 Identities=12% Similarity=0.065 Sum_probs=221.0
Q ss_pred cCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCC
Q psy2470 164 DSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVG 243 (858)
Q Consensus 164 ~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g 243 (858)
.+.|.++|...+...+.+.+ +-+.|+|||||| .||.+|.+... . . +
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~d--------------------vi~~a~TGsGKT-----~a~~lpil~~l----~---~--~ 69 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKD--------------------VIAQAKTGSGKT-----AAFGLGLLQKL----D---V--K 69 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCC--------------------EEEECCCCCcHH-----HHHHHHHHHHh----h---h--c
Confidence 34466666666666665432 224699999999 66666644421 1 1 1
Q ss_pred CCccCEEEccchHHHHHHHHHHHHHHh----CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CC-CccCCCcc
Q psy2470 244 DKARPTIVRSSIDVACSCTVVEFLTEM----GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSY 317 (858)
Q Consensus 244 ~~~~~~LVl~PtR~la~qva~~v~~e~----g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~ 317 (858)
...+++||++|||+||.|+++.+.... +.++...+|++....+... ...+++|+|+|||+|++ +. +...++++
T Consensus 70 ~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~-l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l 148 (460)
T PRK11776 70 RFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDS-LEHGAHIIVGTPGRILDHLRKGTLDLDAL 148 (460)
T ss_pred cCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHH-hcCCCCEEEEChHHHHHHHHcCCccHHHC
Confidence 123468999999999999988764321 2333333222222111111 12468999999999999 43 33456666
Q ss_pred cEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe--ec
Q psy2470 318 LVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH--LY 387 (858)
Q Consensus 318 ~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~--~~ 387 (858)
.++ ++++ ++|...+...+. ..++++|+++||||+ +...+++.+.. ++..+.+... ..
T Consensus 149 ~~lViDEad~~l~----~g~~~~l~~i~~-----~~~~~~q~ll~SAT~~~~~~~l~~~~~~----~~~~i~~~~~~~~~ 215 (460)
T PRK11776 149 NTLVLDEADRMLD----MGFQDAIDAIIR-----QAPARRQTLLFSATYPEGIAAISQRFQR----DPVEVKVESTHDLP 215 (460)
T ss_pred CEEEEECHHHHhC----cCcHHHHHHHHH-----hCCcccEEEEEEecCcHHHHHHHHHhcC----CCEEEEECcCCCCC
Confidence 665 8888 665554444444 667789999999999 45677776653 4555555432 23
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++.+|......+ +...+..++....++++||||+++++++.+++.|.+. ++.+..+||+|++++|..+
T Consensus 216 ~i~~~~~~~~~~~----k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------~~~v~~~hg~~~~~eR~~~ 284 (460)
T PRK11776 216 AIEQRFYEVSPDE----RLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQ-------GFSALALHGDLEQRDRDQV 284 (460)
T ss_pred CeeEEEEEeCcHH----HHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHH
Confidence 3555555433322 4555666666666789999999999999999999877 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||+++||||||+|++||| || .|-+.++|+||+|||||.|. |.||.++
T Consensus 285 l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~--------~d----------~p~~~~~yiqR~GRtGR~g~~G~ai~l~ 346 (460)
T PRK11776 285 LVRFANRSCSVLVATDVAARGLDIKALEAVIN--------YE----------LARDPEVHVHRIGRTGRAGSKGLALSLV 346 (460)
T ss_pred HHHHHcCCCcEEEEecccccccchhcCCeEEE--------ec----------CCCCHhHhhhhcccccCCCCcceEEEEE
Confidence 99999999999999999999999999999999 66 67788999999999999997 9999999
|
|
| >KOG0925|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=346.38 Aligned_cols=136 Identities=40% Similarity=0.566 Sum_probs=128.4
Q ss_pred ccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||||||||||+.| .+|++.+.|||+|+||+++||+||.+||+|+..|||||||.+++|.+|++.|..|+|||+||+||
T Consensus 377 pGkcfrLYte~~~~~em~~~typeilrsNL~s~VL~LKklgI~dlvhfdfmDpPAPEtLMrALE~LnYLaaLdDdGnLT- 455 (699)
T KOG0925|consen 377 PGKCFRLYTEEAFEKEMQPQTYPEILRSNLSSTVLQLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLAALDDDGNLT- 455 (699)
T ss_pred CCceEEeecHHhhhhcCCCCCcHHHHHHhhHHHHHHHHhcCcccccCCcCCCCCChHHHHHHHHHhhhhhhhCCCcccc-
Confidence 9999999999999 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhh-hhcccccCCCCcccccccch
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLR-GLCDNVDSGPETFHDHEMCF 177 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~-~~~~~~~~~~~~f~~~e~~~ 177 (858)
++|..|++||+||.+|||||.|.++- +.++++.|.||. +..++||+.+++|.+.+-+.
T Consensus 456 ~lG~imSEFPLdPqLAkmLi~S~efnCsnEiLsisAMLsvPncFvRp~~~a~kaAdeak~~faH~dGDH 524 (699)
T KOG0925|consen 456 SLGEIMSEFPLDPQLAKMLIGSCEFNCSNEILSISAMLSVPNCFVRPTSSASKAADEAKETFAHIDGDH 524 (699)
T ss_pred hhhhhhhcCCCChHHHHHHhhcCCCCchHHHHHHHhcccCCccccCCChhHHHHHHHHHHHhccCCcch
Confidence 69999999999999999999999885 456889999999 99999999889988876554
|
|
| >KOG0348|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=336.01 Aligned_cols=344 Identities=16% Similarity=0.191 Sum_probs=241.7
Q ss_pred HhhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCcc
Q psy2470 122 GETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMP 201 (858)
Q Consensus 122 G~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~ 201 (858)
|-..+.|.+||.+..-|- .++. -++|...|...+.-.|.+.+..
T Consensus 135 s~~f~~LGL~~~lv~~L~--------------~~m~------i~~pTsVQkq~IP~lL~grD~l---------------- 178 (708)
T KOG0348|consen 135 SAAFASLGLHPHLVSHLN--------------TKMK------ISAPTSVQKQAIPVLLEGRDAL---------------- 178 (708)
T ss_pred cccchhcCCCHHHHHHHH--------------HHhc------cCccchHhhcchhhhhcCcceE----------------
Confidence 566777777777655442 2211 2347778888888777753322
Q ss_pred ccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeee
Q psy2470 202 YQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISR 281 (858)
Q Consensus 202 ~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~v 281 (858)
+-|||||||| +|+++|.+....++--..+ ....+.+||++||||||.|+++.+.+.... ..++.-
T Consensus 179 ----V~aQTGSGKT-----LAYllPiVq~Lq~m~~ki~---Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~---~hWIVP 243 (708)
T KOG0348|consen 179 ----VRAQTGSGKT-----LAYLLPIVQSLQAMEPKIQ---RSDGPYALVIVPTRELALQIYETVQKLLKP---FHWIVP 243 (708)
T ss_pred ----EEcCCCCccc-----HHHHHHHHHHHHhcCcccc---ccCCceEEEEechHHHHHHHHHHHHHHhcC---ceEEee
Confidence 3499999999 7888886653333221122 123457899999999999999988666554 334446
Q ss_pred eEEEeccceee------cceeEEEeecCcccc-CCCccC--CCc--ccEE----EecCCCCCchhhhhHHHHHHHHhc--
Q psy2470 282 GYMFRKGRMKI------LVSKIFKMSQGKPSD-SGVEPI--SQS--YLVE----LSILAPGGQDVIGEDMKAFAEQLK-- 344 (858)
Q Consensus 282 G~~vr~~~~~~------~~t~I~v~TpGrLl~-~~~~~~--L~~--~~vl----R~l~~~~~~d~ll~~lk~~~~~l~-- 344 (858)
|+-++++...+ ++.+|+++|||||+| +.+... +++ |.|+ |.|+ +||-+++.++|+
T Consensus 244 g~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlle--------LGfekdit~Il~~v 315 (708)
T KOG0348|consen 244 GVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLE--------LGFEKDITQILKAV 315 (708)
T ss_pred ceeecccccccHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHh--------ccchhhHHHHHHHH
Confidence 77888888776 568999999999999 665443 333 3344 8888 666665554443
Q ss_pred ----------ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee--------------------------
Q psy2470 345 ----------PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL-------------------------- 386 (858)
Q Consensus 345 ----------~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~-------------------------- 386 (858)
+..++.+|.+|.|||+ .+..+++.-.. +|..|..+...
T Consensus 316 ~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~sLk----Dpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~ 391 (708)
T KOG0348|consen 316 HSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADLSLK----DPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFA 391 (708)
T ss_pred hhccchhcccccccHHHHhHhhhhhhHHHHHHHhhcccc----CceeeeccchhhhcCcchhhhhhcCCccccccccccc
Confidence 1223458999999999 57778875553 33333311000
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----C----------Ccc
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQR-----E----------DLK 449 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~----------~~~ 449 (858)
....+.|...+..-.+-.....+.+....++.-+++||+.+++.|+.-++.+......+ + ..+
T Consensus 392 iPeqL~qry~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~ 471 (708)
T KOG0348|consen 392 IPEQLLQRYTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMD 471 (708)
T ss_pred CcHHhhhceEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhc
Confidence 00112233333333333445556666666666789999999999999999887432110 0 245
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHH
Q psy2470 450 LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQ 529 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~q 529 (858)
.++.-|||+|+|++|..+|+.|+...+-|++|||||+||||+|+|++||. || .|-+.++|+|
T Consensus 472 ~k~~rLHGsm~QeeRts~f~~Fs~~~~~VLLcTDVAaRGLDlP~V~~vVQ--------Yd----------~P~s~adylH 533 (708)
T KOG0348|consen 472 LKFYRLHGSMEQEERTSVFQEFSHSRRAVLLCTDVAARGLDLPHVGLVVQ--------YD----------PPFSTADYLH 533 (708)
T ss_pred ceEEEecCchhHHHHHHHHHhhccccceEEEehhhhhccCCCCCcCeEEE--------eC----------CCCCHHHHHH
Confidence 67999999999999999999999999999999999999999999999999 98 7899999999
Q ss_pred hhcccCCCCC-ceEEEeh
Q psy2470 530 RAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 530 R~GRaGR~g~-G~~~rL~ 546 (858)
|+|||+|.|. |.++-+.
T Consensus 534 RvGRTARaG~kG~alLfL 551 (708)
T KOG0348|consen 534 RVGRTARAGEKGEALLFL 551 (708)
T ss_pred HhhhhhhccCCCceEEEe
Confidence 9999999997 9888665
|
|
| >PRK04837 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-36 Score=347.83 Aligned_cols=314 Identities=15% Similarity=0.113 Sum_probs=212.9
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGV 242 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~ 242 (858)
....|..+|...+...+.+.+ . -+.|+|||||| .||.+|.+...+... ...+.
T Consensus 27 g~~~pt~iQ~~aip~il~g~d--v------------------i~~ApTGsGKT-----la~llp~l~~l~~~~--~~~~~ 79 (423)
T PRK04837 27 GFHNCTPIQALALPLTLAGRD--V------------------AGQAQTGTGKT-----MAFLTATFHYLLSHP--APEDR 79 (423)
T ss_pred CCCCCCHHHHHHHHHHhCCCc--E------------------EEECCCCchHH-----HHHHHHHHHHHHhcc--ccccc
Confidence 334566677777776666532 2 24699999999 666666544222110 01111
Q ss_pred CCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CC-CccCCCcc
Q psy2470 243 GDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSY 317 (858)
Q Consensus 243 g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~ 317 (858)
....+++||++||||||.|+++.+. +..|.+++..+||.++..... ....+++|+|+|||+|++ +. +...++.+
T Consensus 80 ~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~~~~v~~~~gg~~~~~~~~-~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v 158 (423)
T PRK04837 80 KVNQPRALIMAPTRELAVQIHADAEPLAQATGLKLGLAYGGDGYDKQLK-VLESGVDILIGTTGRLIDYAKQNHINLGAI 158 (423)
T ss_pred ccCCceEEEECCcHHHHHHHHHHHHHHhccCCceEEEEECCCCHHHHHH-HhcCCCCEEEECHHHHHHHHHcCCcccccc
Confidence 1233568999999999999976542 233444333322222211111 112457999999999999 32 33456665
Q ss_pred cEE------EecCCCCCchhhhhHHHHHHHHhcccCC--CCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCee-
Q psy2470 318 LVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR--TQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHL- 386 (858)
Q Consensus 318 ~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~--~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~- 386 (858)
.++ ++++ .+|...+...+. ..+ ..+|.++||||++ +..+...+.. ++..+.+....
T Consensus 159 ~~lViDEad~l~~----~~f~~~i~~i~~-----~~~~~~~~~~~l~SAT~~~~~~~~~~~~~~----~p~~i~v~~~~~ 225 (423)
T PRK04837 159 QVVVLDEADRMFD----LGFIKDIRWLFR-----RMPPANQRLNMLFSATLSYRVRELAFEHMN----NPEYVEVEPEQK 225 (423)
T ss_pred cEEEEecHHHHhh----cccHHHHHHHHH-----hCCCccceeEEEEeccCCHHHHHHHHHHCC----CCEEEEEcCCCc
Confidence 555 7777 554444333222 233 3567899999994 3444433331 45555554322
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
..+.+.+.... ...+...+..++.....+++||||++++.++.+++.|... ++.+..+||++++++|
T Consensus 226 ~~~~i~~~~~~~~----~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~v~~lhg~~~~~~R 294 (423)
T PRK04837 226 TGHRIKEELFYPS----NEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAAD-------GHRVGLLTGDVAQKKR 294 (423)
T ss_pred CCCceeEEEEeCC----HHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhC-------CCcEEEecCCCChhHH
Confidence 12322222111 1234555666666666789999999999999999999876 8899999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|.||+|||||.|. |.|+
T Consensus 295 ~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~--------~d----------~P~s~~~yiqR~GR~gR~G~~G~ai 356 (423)
T PRK04837 295 LRILEEFTRGDLDILVATDVAARGLHIPAVTHVFN--------YD----------LPDDCEDYVHRIGRTGRAGASGHSI 356 (423)
T ss_pred HHHHHHHHcCCCcEEEEechhhcCCCccccCEEEE--------eC----------CCCchhheEeccccccCCCCCeeEE
Confidence 99999999999999999999999999999999999 77 67888999999999999997 9999
Q ss_pred Eeh
Q psy2470 544 RKN 546 (858)
Q Consensus 544 rL~ 546 (858)
.++
T Consensus 357 ~~~ 359 (423)
T PRK04837 357 SLA 359 (423)
T ss_pred EEe
Confidence 999
|
|
| >PRK11192 ATP-dependent RNA helicase SrmB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=345.79 Aligned_cols=316 Identities=13% Similarity=0.135 Sum_probs=221.8
Q ss_pred hcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCC
Q psy2470 159 LCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQP 238 (858)
Q Consensus 159 ~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~ 238 (858)
+.+.....|..+|...+...+.+.+ .+ +.|+|||||| .+|.+|.+.+...+..
T Consensus 16 l~~~g~~~p~~iQ~~ai~~~~~g~d--~l------------------~~apTGsGKT-----~~~~lp~l~~l~~~~~-- 68 (434)
T PRK11192 16 LQDKGYTRPTAIQAEAIPPALDGRD--VL------------------GSAPTGTGKT-----AAFLLPALQHLLDFPR-- 68 (434)
T ss_pred HHHCCCCCCCHHHHHHHHHHhCCCC--EE------------------EECCCCChHH-----HHHHHHHHHHHhhccc--
Confidence 3444445577777777777776532 12 3599999999 6666665554333211
Q ss_pred CCCCCCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC-ccC
Q psy2470 239 EMGVGDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPI 313 (858)
Q Consensus 239 ~~g~g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~ 313 (858)
.. ....++||++|||+||.|+++++. +..+..++..+|++.+..+ .......++|+|+|||+|++ +.. ...
T Consensus 69 ~~---~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~~~~v~~~~gg~~~~~~-~~~l~~~~~IlV~Tp~rl~~~~~~~~~~ 144 (434)
T PRK11192 69 RK---SGPPRILILTPTRELAMQVADQARELAKHTHLDIATITGGVAYMNH-AEVFSENQDIVVATPGRLLQYIKEENFD 144 (434)
T ss_pred cC---CCCceEEEECCcHHHHHHHHHHHHHHHccCCcEEEEEECCCCHHHH-HHHhcCCCCEEEEChHHHHHHHHcCCcC
Confidence 11 122458999999999999987653 3334444444333322111 11123457999999999999 433 334
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC---HHHHHHHhhcccCCCCcEEEecC
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD---AEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~---~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
+.++.+| ++++ ++|...+..... ..+...|+++||||++ ...+.+++.. ++..+.+..
T Consensus 145 ~~~v~~lViDEah~~l~----~~~~~~~~~i~~-----~~~~~~q~~~~SAT~~~~~~~~~~~~~~~----~~~~i~~~~ 211 (434)
T PRK11192 145 CRAVETLILDEADRMLD----MGFAQDIETIAA-----ETRWRKQTLLFSATLEGDAVQDFAERLLN----DPVEVEAEP 211 (434)
T ss_pred cccCCEEEEECHHHHhC----CCcHHHHHHHHH-----hCccccEEEEEEeecCHHHHHHHHHHHcc----CCEEEEecC
Confidence 5666655 8888 554433333332 5566789999999995 4556666553 343444332
Q ss_pred ee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCH
Q psy2470 385 HL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPN 461 (858)
Q Consensus 385 ~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q 461 (858)
.. ..+.+++... +..+.+...+..++.....+++||||+++++++.+++.|+.. ++.+..+||+|++
T Consensus 212 ~~~~~~~i~~~~~~~---~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~-------~~~~~~l~g~~~~ 281 (434)
T PRK11192 212 SRRERKKIHQWYYRA---DDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKA-------GINCCYLEGEMVQ 281 (434)
T ss_pred CcccccCceEEEEEe---CCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhC-------CCCEEEecCCCCH
Confidence 21 2234443322 223445666777776656789999999999999999999876 8899999999999
Q ss_pred HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c
Q psy2470 462 NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G 540 (858)
Q Consensus 462 ~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G 540 (858)
.+|..+++.|++|+.+||||||++++|||||+|++||| || .|.|.+.|+||+|||||.|. |
T Consensus 282 ~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~--------~d----------~p~s~~~yiqr~GR~gR~g~~g 343 (434)
T PRK11192 282 AKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVIN--------FD----------MPRSADTYLHRIGRTGRAGRKG 343 (434)
T ss_pred HHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEE--------EC----------CCCCHHHHhhcccccccCCCCc
Confidence 99999999999999999999999999999999999999 76 67889999999999999987 9
Q ss_pred eEEEeh
Q psy2470 541 HVYRKN 546 (858)
Q Consensus 541 ~~~rL~ 546 (858)
.|+.++
T Consensus 344 ~ai~l~ 349 (434)
T PRK11192 344 TAISLV 349 (434)
T ss_pred eEEEEe
Confidence 999988
|
|
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=355.87 Aligned_cols=308 Identities=15% Similarity=0.113 Sum_probs=217.8
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
...+.|..+|...+...+.+.+ . -+.|||||||| +||.+|.+... .. .
T Consensus 24 ~G~~~ptpiQ~~ai~~ll~g~d--v------------------l~~ApTGsGKT-----~af~lpll~~l----~~-~-- 71 (629)
T PRK11634 24 LGYEKPSPIQAECIPHLLNGRD--V------------------LGMAQTGSGKT-----AAFSLPLLHNL----DP-E-- 71 (629)
T ss_pred CCCCCCCHHHHHHHHHHHcCCC--E------------------EEEcCCCCcHH-----HHHHHHHHHHh----hh-c--
Confidence 3444566666666666554421 2 23699999999 66777754321 11 1
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhC----CcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCCc-cCCC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMG----CRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE-PISQ 315 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g----~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~-~~L~ 315 (858)
....++||++|||+||.|+++.+.+..+ ..+...|++..+..+. .....+++|+|+|||+|++ +... ..++
T Consensus 72 --~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~-~~l~~~~~IVVgTPgrl~d~l~r~~l~l~ 148 (629)
T PRK11634 72 --LKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQL-RALRQGPQIVVGTPGRLLDHLKRGTLDLS 148 (629)
T ss_pred --cCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHH-HHhcCCCCEEEECHHHHHHHHHcCCcchh
Confidence 1224689999999999999887754432 2322222211111111 1122468999999999999 4433 3566
Q ss_pred cccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee-
Q psy2470 316 SYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL- 386 (858)
Q Consensus 316 ~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~- 386 (858)
++.+| .|++ ++|...+...+. ..+++.|+++||||+ .+..+.+.|.. ++..+.+....
T Consensus 149 ~l~~lVlDEAd~ml~----~gf~~di~~Il~-----~lp~~~q~llfSAT~p~~i~~i~~~~l~----~~~~i~i~~~~~ 215 (629)
T PRK11634 149 KLSGLVLDEADEMLR----MGFIEDVETIMA-----QIPEGHQTALFSATMPEAIRRITRRFMK----EPQEVRIQSSVT 215 (629)
T ss_pred hceEEEeccHHHHhh----cccHHHHHHHHH-----hCCCCCeEEEEEccCChhHHHHHHHHcC----CCeEEEccCccc
Confidence 66655 6777 454444444333 567789999999999 35556665553 45555554332
Q ss_pred --cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH
Q psy2470 387 --YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 387 --~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r 464 (858)
..+.+.|...... .+...+..++..+....+||||+|+..++.+++.|.+. ++.+..+||+|+|.+|
T Consensus 216 ~~~~i~q~~~~v~~~----~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~-------g~~~~~lhgd~~q~~R 284 (629)
T PRK11634 216 TRPDISQSYWTVWGM----RKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERN-------GYNSAALNGDMNQALR 284 (629)
T ss_pred cCCceEEEEEEechh----hHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhC-------CCCEEEeeCCCCHHHH
Confidence 2344444432222 23445566666666788999999999999999999876 8999999999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
.++++.|++|+.+||||||++++|||||+|++||| || .|.+.++|+||+|||||.|+ |.|+
T Consensus 285 ~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~--------~d----------~P~~~e~yvqRiGRtGRaGr~G~ai 346 (629)
T PRK11634 285 EQTLERLKDGRLDILIATDVAARGLDVERISLVVN--------YD----------IPMDSESYVHRIGRTGRAGRAGRAL 346 (629)
T ss_pred HHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhccccCCCCcceEE
Confidence 99999999999999999999999999999999999 77 68899999999999999998 9999
Q ss_pred Eeh
Q psy2470 544 RKN 546 (858)
Q Consensus 544 rL~ 546 (858)
.++
T Consensus 347 ~~v 349 (629)
T PRK11634 347 LFV 349 (629)
T ss_pred EEe
Confidence 998
|
|
| >PRK10590 ATP-dependent RNA helicase RhlE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=345.97 Aligned_cols=312 Identities=12% Similarity=0.097 Sum_probs=216.5
Q ss_pred cCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCC
Q psy2470 164 DSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVG 243 (858)
Q Consensus 164 ~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g 243 (858)
...|..+|...+...+.+.+ +-+.|+|||||| .+|.+|.+...... .....+
T Consensus 21 ~~~pt~iQ~~ai~~il~g~d--------------------vlv~apTGsGKT-----la~~lpil~~l~~~---~~~~~~ 72 (456)
T PRK10590 21 YREPTPIQQQAIPAVLEGRD--------------------LMASAQTGTGKT-----AGFTLPLLQHLITR---QPHAKG 72 (456)
T ss_pred CCCCCHHHHHHHHHHhCCCC--------------------EEEECCCCCcHH-----HHHHHHHHHHhhhc---cccccc
Confidence 34466666666666665432 224699999999 77777754422111 111112
Q ss_pred CCccCEEEccchHHHHHHHHHHHHHH---hCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCccc
Q psy2470 244 DKARPTIVRSSIDVACSCTVVEFLTE---MGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYL 318 (858)
Q Consensus 244 ~~~~~~LVl~PtR~la~qva~~v~~e---~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~ 318 (858)
....++||++|||+||.|+.+.+.+. ++......++++.... ........++|+|+|||+|++ . .....++++.
T Consensus 73 ~~~~~aLil~PtreLa~Qi~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~ 151 (456)
T PRK10590 73 RRPVRALILTPTRELAAQIGENVRDYSKYLNIRSLVVFGGVSINP-QMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVE 151 (456)
T ss_pred CCCceEEEEeCcHHHHHHHHHHHHHHhccCCCEEEEEECCcCHHH-HHHHHcCCCcEEEEChHHHHHHHHcCCcccccce
Confidence 23346899999999999998876543 2222222211111100 001122457999999999999 3 3334566666
Q ss_pred EE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCee---c
Q psy2470 319 VE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHL---Y 387 (858)
Q Consensus 319 vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~---~ 387 (858)
+| ++++ .++...+...+. ..++++|+++||||+. +..+...+.. ++..+.+..+. .
T Consensus 152 ~lViDEah~ll~----~~~~~~i~~il~-----~l~~~~q~l~~SAT~~~~~~~l~~~~~~----~~~~i~~~~~~~~~~ 218 (456)
T PRK10590 152 ILVLDEADRMLD----MGFIHDIRRVLA-----KLPAKRQNLLFSATFSDDIKALAEKLLH----NPLEIEVARRNTASE 218 (456)
T ss_pred EEEeecHHHHhc----cccHHHHHHHHH-----hCCccCeEEEEeCCCcHHHHHHHHHHcC----CCeEEEEeccccccc
Confidence 65 7888 666555554444 5677889999999994 4566665542 44445443322 2
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.+..++..... ..+...+..+.......++|||++++++++.+++.|.+. ++.+..+||++++++|.++
T Consensus 219 ~i~~~~~~~~~----~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~R~~~ 287 (456)
T PRK10590 219 QVTQHVHFVDK----KRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKD-------GIRSAAIHGNKSQGARTRA 287 (456)
T ss_pred ceeEEEEEcCH----HHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHC-------CCCEEEEECCCCHHHHHHH
Confidence 23333332221 223344555555555678999999999999999999876 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|+.+||||||++++|||||+|++||| || .|.+.++|+||+|||||.|. |.|+.++
T Consensus 288 l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~--------~~----------~P~~~~~yvqR~GRaGR~g~~G~ai~l~ 349 (456)
T PRK10590 288 LADFKSGDIRVLVATDIAARGLDIEELPHVVN--------YE----------LPNVPEDYVHRIGRTGRAAATGEALSLV 349 (456)
T ss_pred HHHHHcCCCcEEEEccHHhcCCCcccCCEEEE--------eC----------CCCCHHHhhhhccccccCCCCeeEEEEe
Confidence 99999999999999999999999999999999 76 67889999999999999987 9999988
|
|
| >PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=347.47 Aligned_cols=312 Identities=13% Similarity=0.103 Sum_probs=213.8
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+.+ . -++|+|||||| +||.+|.+......... ..
T Consensus 139 ~g~~~ptpiQ~~aip~il~g~d--v------------------iv~ApTGSGKT-----layllPil~~l~~~~~~--~~ 191 (518)
T PLN00206 139 AGYEFPTPIQMQAIPAALSGRS--L------------------LVSADTGSGKT-----ASFLVPIISRCCTIRSG--HP 191 (518)
T ss_pred cCCCCCCHHHHHHHHHHhcCCC--E------------------EEEecCCCCcc-----HHHHHHHHHHHHhhccc--cc
Confidence 3345677788777777775532 1 24699999999 66777755432211100 00
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-C-CCccC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-S-GVEPI 313 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~-~~~~~ 313 (858)
.......+||++|||+||.|+.+.+ +.++...+.. +...+++.. ....+++|+|+|||+|++ + .....
T Consensus 192 ~~~~~~~aLIL~PTreLa~Qi~~~~-~~l~~~~~~~---~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~ 267 (518)
T PLN00206 192 SEQRNPLAMVLTPTRELCVQVEDQA-KVLGKGLPFK---TALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKHDIE 267 (518)
T ss_pred cccCCceEEEEeCCHHHHHHHHHHH-HHHhCCCCce---EEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcCCcc
Confidence 1123356899999999999987655 4444443333 111111111 122457999999999999 3 33445
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCe
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGH 385 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~ 385 (858)
++++.+| ++++ .+|...+.+.+. .. ++.|+++||||+ +++.+++.+.. ++..+.+...
T Consensus 268 l~~v~~lViDEad~ml~----~gf~~~i~~i~~-----~l-~~~q~l~~SATl~~~v~~l~~~~~~----~~~~i~~~~~ 333 (518)
T PLN00206 268 LDNVSVLVLDEVDCMLE----RGFRDQVMQIFQ-----AL-SQPQVLLFSATVSPEVEKFASSLAK----DIILISIGNP 333 (518)
T ss_pred chheeEEEeecHHHHhh----cchHHHHHHHHH-----hC-CCCcEEEEEeeCCHHHHHHHHHhCC----CCEEEEeCCC
Confidence 6666655 7888 554444333332 22 467999999999 56778887763 3444444322
Q ss_pred e---cceeEEEecCCccchHHHHHHHHHHHHhhC--CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCC
Q psy2470 386 L---YPVSVYYSNDPVVNYVQGVVDTAIKIHESM--PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLP 460 (858)
Q Consensus 386 ~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~ 460 (858)
. ..+.+.+......+ +...+..++... ..+++|||++++..++.+++.|... .++.+..+||+++
T Consensus 334 ~~~~~~v~q~~~~~~~~~----k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~------~g~~~~~~Hg~~~ 403 (518)
T PLN00206 334 NRPNKAVKQLAIWVETKQ----KKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVV------TGLKALSIHGEKS 403 (518)
T ss_pred CCCCcceeEEEEeccchh----HHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhc------cCcceEEeeCCCC
Confidence 2 12333333222222 223344444322 2468999999999999999999753 2788999999999
Q ss_pred HHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 461 NNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 461 q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
+++|..+++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|.
T Consensus 404 ~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~--------~d----------~P~s~~~yihRiGRaGR~g~~ 465 (518)
T PLN00206 404 MKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVII--------FD----------MPNTIKEYIHQIGRASRMGEK 465 (518)
T ss_pred HHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEE--------eC----------CCCCHHHHHHhccccccCCCC
Confidence 999999999999999999999999999999999999999 77 68899999999999999997
Q ss_pred ceEEEeh
Q psy2470 540 GHVYRKN 546 (858)
Q Consensus 540 G~~~rL~ 546 (858)
|.|+.++
T Consensus 466 G~ai~f~ 472 (518)
T PLN00206 466 GTAIVFV 472 (518)
T ss_pred eEEEEEE
Confidence 9999998
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-37 Score=332.37 Aligned_cols=325 Identities=17% Similarity=0.171 Sum_probs=216.2
Q ss_pred HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccc
Q psy2470 154 HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLR 233 (858)
Q Consensus 154 ~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~ 233 (858)
..|+.+....+..|..+|.-.+...+++... ++ --|.|||||| +||.||.+...+.
T Consensus 191 ~iL~aL~~~gFs~Pt~IQsl~lp~ai~gk~D--Il-----------------GaAeTGSGKT-----LAFGIPiv~~l~~ 246 (731)
T KOG0347|consen 191 EILRALSNLGFSRPTEIQSLVLPAAIRGKVD--IL-----------------GAAETGSGKT-----LAFGIPIVERLLE 246 (731)
T ss_pred HHHHHHHhcCCCCCccchhhcccHhhccchh--cc-----------------cccccCCCce-----eeecchhhhhhhh
Confidence 5566667777777777777777777666322 20 1389999999 9999997762211
Q ss_pred ccC--CCC--CCCCCCccCEEEccchHHHHHHHHHHH---HHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCccc
Q psy2470 234 YIG--QPE--MGVGDKARPTIVRSSIDVACSCTVVEF---LTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPS 306 (858)
Q Consensus 234 ~l~--~~~--~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl 306 (858)
.-+ +.. +....+.+.+||++||||||.||.+.+ +...+.++...+||.. ...+++.....++|||||||||+
T Consensus 247 ~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t~i~v~si~GGLa-vqKQqRlL~~~p~IVVATPGRlw 325 (731)
T KOG0347|consen 247 SSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKTQIRVASITGGLA-VQKQQRLLNQRPDIVVATPGRLW 325 (731)
T ss_pred ccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhccccCeEEEEeechhH-HHHHHHHHhcCCCEEEecchHHH
Confidence 100 000 000011234899999999999997765 3334555555522221 11233344467999999999999
Q ss_pred c-CCCcc----CCCcccEE------EecCCCCCchhhhhHHHHHHHHhc-ccCCCCceEEEEecccCHHHHHHH---hh-
Q psy2470 307 D-SGVEP----ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK-PLKRTQLKLIISSATVDAEEICQF---YN- 370 (858)
Q Consensus 307 ~-~~~~~----~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~-~~~~~~~q~il~SAT~~~~~~~~~---~~- 370 (858)
. +..+. .+.++.++ ||+. .+....+-+.+. .|. ....+.+|+++||||++....+.. -.
T Consensus 326 eli~e~n~~l~~~k~vkcLVlDEaDRmve----kghF~Els~lL~-~L~e~~~~~qrQTlVFSATlt~~~~~~~~~~~k~ 400 (731)
T KOG0347|consen 326 ELIEEDNTHLGNFKKVKCLVLDEADRMVE----KGHFEELSKLLK-HLNEEQKNRQRQTLVFSATLTLVLQQPLSSSRKK 400 (731)
T ss_pred HHHHhhhhhhhhhhhceEEEEccHHHHhh----hccHHHHHHHHH-HhhhhhcccccceEEEEEEeehhhcChhHHhhhc
Confidence 9 44332 34455555 9999 776665555443 443 344567899999999943221110 00
Q ss_pred ----------------cccC-CCCcEEEecCeecceeEEEecCCccchHHHHHHHHH-----------HHHhhCCCCCEE
Q psy2470 371 ----------------ISAS-SNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAI-----------KIHESMPVGDIL 422 (858)
Q Consensus 371 ----------------~~~~-~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~-----------~i~~~~~~g~iL 422 (858)
.-.. .+|.+|.+..... -.....+.++ ..+.+..||..|
T Consensus 401 ~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q~~-------------ta~~l~Es~I~C~~~eKD~ylyYfl~ryPGrTl 467 (731)
T KOG0347|consen 401 KDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQSA-------------TASTLTESLIECPPLEKDLYLYYFLTRYPGRTL 467 (731)
T ss_pred cchhhhhhHHHHHHHHHhCccCCCeeEecCcchh-------------HHHHHHHHhhcCCccccceeEEEEEeecCCceE
Confidence 0000 0111221111100 0001111110 011123489999
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
||||+.+.|.+++-.|+.. ++..++||+.|.|.+|.+.+++|++..--||+||||||||||||+|.|||+
T Consensus 468 VF~NsId~vKRLt~~L~~L-------~i~p~~LHA~M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIH--- 537 (731)
T KOG0347|consen 468 VFCNSIDCVKRLTVLLNNL-------DIPPLPLHASMIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIH--- 537 (731)
T ss_pred EEechHHHHHHHHHHHhhc-------CCCCchhhHHHHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEE---
Confidence 9999999999999999987 888999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. +|-+.+.|+||.|||+|++. |+..-++
T Consensus 538 -----Yq----------VPrtseiYVHRSGRTARA~~~Gvsvml~ 567 (731)
T KOG0347|consen 538 -----YQ----------VPRTSEIYVHRSGRTARANSEGVSVMLC 567 (731)
T ss_pred -----ee----------cCCccceeEecccccccccCCCeEEEEe
Confidence 76 77888889999999999998 9999888
|
|
| >PRK04537 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=345.49 Aligned_cols=310 Identities=13% Similarity=0.113 Sum_probs=210.9
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCC-CC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPE-MG 241 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~-~g 241 (858)
..+.|...|...+...+.+.+ . -+.|+|||||| .||.+|.+...+. ... .+
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~D--v------------------i~~ApTGSGKT-----lafllpil~~l~~---~~~~~~ 79 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGD--V------------------AGQAQTGTGKT-----LAFLVAVMNRLLS---RPALAD 79 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCC--E------------------EEEcCCCCcHH-----HHHHHHHHHHHHh---cccccc
Confidence 344566666666666665532 2 24699999999 6666665432211 110 00
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCc--c
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVE--P 312 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~--~ 312 (858)
......++||++|||+||.|+++.+ +.++...+.. ++...+..+ .....++|+|+|||+|++ +... .
T Consensus 80 ~~~~~~raLIl~PTreLa~Qi~~~~-~~l~~~~~i~---v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~ 155 (572)
T PRK04537 80 RKPEDPRALILAPTRELAIQIHKDA-VKFGADLGLR---FALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQHKVV 155 (572)
T ss_pred cccCCceEEEEeCcHHHHHHHHHHH-HHHhccCCce---EEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhcccc
Confidence 1112356899999999999998765 3444444443 332222211 122457999999999999 4332 2
Q ss_pred CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC--CCceEEEEecccC--HHHHHHHhhcccCCCCcEEEe
Q psy2470 313 ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR--TQLKLIISSATVD--AEEICQFYNISASSNATILSV 382 (858)
Q Consensus 313 ~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~--~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v 382 (858)
.+..+.+| ++++ .+|...+...+. ..+ .+.|+++||||++ +..+...+.. ++..+.+
T Consensus 156 ~l~~v~~lViDEAh~lld----~gf~~~i~~il~-----~lp~~~~~q~ll~SATl~~~v~~l~~~~l~----~p~~i~v 222 (572)
T PRK04537 156 SLHACEICVLDEADRMFD----LGFIKDIRFLLR-----RMPERGTRQTLLFSATLSHRVLELAYEHMN----EPEKLVV 222 (572)
T ss_pred chhheeeeEecCHHHHhh----cchHHHHHHHHH-----hcccccCceEEEEeCCccHHHHHHHHHHhc----CCcEEEe
Confidence 34544443 6666 444333322222 233 2689999999994 3444443332 3444444
Q ss_pred cCeec---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCC
Q psy2470 383 KGHLY---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSL 459 (858)
Q Consensus 383 ~g~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l 459 (858)
..... .+.+.+.... ...+...+..++......++||||++++.++.+++.|.+. ++.+..+||+|
T Consensus 223 ~~~~~~~~~i~q~~~~~~----~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~-------g~~v~~lhg~l 291 (572)
T PRK04537 223 ETETITAARVRQRIYFPA----DEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERH-------GYRVGVLSGDV 291 (572)
T ss_pred ccccccccceeEEEEecC----HHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEeCCC
Confidence 33221 2333332222 1234555666666666789999999999999999999876 88999999999
Q ss_pred CHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 460 ~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
++.+|.++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|.
T Consensus 292 ~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VIn--------yd----------~P~s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 292 PQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYN--------YD----------LPFDAEDYVHRIGRTARLGE 353 (572)
T ss_pred CHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEE--------cC----------CCCCHHHHhhhhcccccCCC
Confidence 9999999999999999999999999999999999999999 77 68899999999999999997
Q ss_pred -ceEEEeh
Q psy2470 540 -GHVYRKN 546 (858)
Q Consensus 540 -G~~~rL~ 546 (858)
|.|+.|+
T Consensus 354 ~G~ai~~~ 361 (572)
T PRK04537 354 EGDAISFA 361 (572)
T ss_pred CceEEEEe
Confidence 9999998
|
|
| >KOG0341|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=315.26 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=198.3
Q ss_pred ccccCCcchhhhhhhhcCcCccccccc--ccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHh---CC---cCc
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLR--YIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEM---GC---RMD 275 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~--~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~---g~---~~g 275 (858)
+|-|||||| +-|.+|.+.|.+- +.-.-.. ...+..||++|.||||.|+..-+ ...+ |. +.+
T Consensus 213 IAfTGSGKT-----lvFvLP~imf~LeqE~~lPf~~---~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~ 284 (610)
T KOG0341|consen 213 IAFTGSGKT-----LVFVLPVIMFALEQEMMLPFAR---GEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSL 284 (610)
T ss_pred EEeecCCce-----EEEeHHHHHHHHHHHhcCcccc---CCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhh
Confidence 689999999 7788887665431 1111111 12346799999999999986533 2222 22 223
Q ss_pred cEeeeeeEEEeccceeecceeEEEeecCccccCCCcc--CCC--cccEE----EecCCCCCchhhhhHHHHHHHHhcccC
Q psy2470 276 FEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEP--ISQ--SYLVE----LSILAPGGQDVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 276 ~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~--~L~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~ 347 (858)
.-.||+...- ..+....+.||+|+|||||.|++... .|+ +|.++ ||+| ++|-..+...+. ..
T Consensus 285 LciGG~~v~e-ql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiD----mGFEddir~iF~-----~F 354 (610)
T KOG0341|consen 285 LCIGGVPVRE-QLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMID----MGFEDDIRTIFS-----FF 354 (610)
T ss_pred hhhcCccHHH-HHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhh----ccchhhHHHHHH-----HH
Confidence 3312221111 11223367899999999999943332 333 67677 9999 555544444443 55
Q ss_pred CCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchH--HHHHHHHHHHHhhCCCCCEEE
Q psy2470 348 RTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYV--QGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 348 ~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~--~~~~~~l~~i~~~~~~g~iLV 423 (858)
...+|++||||||. ++.|++.-.. +|..+.| ||.......... ..+|+ ++++-.++.-+ ++...++||
T Consensus 355 K~QRQTLLFSATMP~KIQ~FAkSALV----KPvtvNV-GRAGAAsldViQ--evEyVkqEaKiVylLeCL-QKT~PpVLI 426 (610)
T KOG0341|consen 355 KGQRQTLLFSATMPKKIQNFAKSALV----KPVTVNV-GRAGAASLDVIQ--EVEYVKQEAKIVYLLECL-QKTSPPVLI 426 (610)
T ss_pred hhhhheeeeeccccHHHHHHHHhhcc----cceEEec-ccccccchhHHH--HHHHHHhhhhhhhHHHHh-ccCCCceEE
Confidence 67899999999994 4455553331 3333443 332211111000 11222 22222333333 233567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCc
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFV 503 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~ 503 (858)
|+-.+.+++.+.+.|--. |..++.+||+..|++|..+++.|+.|+..|+||||||+.|+|.|+|.||||
T Consensus 427 FaEkK~DVD~IhEYLLlK-------GVEavaIHGGKDQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVIN---- 495 (610)
T KOG0341|consen 427 FAEKKADVDDIHEYLLLK-------GVEAVAIHGGKDQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVIN---- 495 (610)
T ss_pred EeccccChHHHHHHHHHc-------cceeEEeecCcchhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhcc----
Confidence 999999999999999755 899999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 504 KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 504 k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| +|...++|+||+|||||.|+ |++-++.
T Consensus 496 ----yD----------MP~eIENYVHRIGRTGRsg~~GiATTfI 525 (610)
T KOG0341|consen 496 ----YD----------MPEEIENYVHRIGRTGRSGKTGIATTFI 525 (610)
T ss_pred ----CC----------ChHHHHHHHHHhcccCCCCCcceeeeee
Confidence 88 89999999999999999998 9998877
|
|
| >KOG0327|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=307.45 Aligned_cols=315 Identities=16% Similarity=0.199 Sum_probs=237.4
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
...|+|+..+.+++|+..|...+...+++.+. ++.||+||||| .||.++.+.
T Consensus 35 e~LLrgiy~yGFekPSaIQqraI~p~i~G~dv--------------------~~qaqsgTgKt-----~af~i~iLq--- 86 (397)
T KOG0327|consen 35 ESLLRGIYAYGFEKPSAIQQRAILPCIKGHDV--------------------IAQAQSGTGKT-----AAFLISILQ--- 86 (397)
T ss_pred HHHHhHHHhhccCCchHHHhccccccccCCce--------------------eEeeeccccch-----hhhHHHHHh---
Confidence 47899999999999999999999999999543 23599999999 666665444
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE-eeeeeEEEec-cc--eeecceeEEEeecCccccC
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE-YISRGYMFRK-GR--MKILVSKIFKMSQGKPSDS 308 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~-~~~vG~~vr~-~~--~~~~~t~I~v~TpGrLl~~ 308 (858)
+.+ .-.+.+++|+++||||+|+|+. .+...+|...+.. .+.+|..... +. .....++|+++||||.+++
T Consensus 87 ----~iD--~~~ke~qalilaPtreLa~qi~-~v~~~lg~~~~~~v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dm 159 (397)
T KOG0327|consen 87 ----QID--MSVKETQALILAPTRELAQQIQ-KVVRALGDHMDVSVHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDM 159 (397)
T ss_pred ----hcC--cchHHHHHHHhcchHHHHHHHH-HHHHhhhcccceeeeeecCcccchhhhhhhhccCceeecCCchhHHHh
Confidence 112 2245578999999999999998 4556666554433 1124433222 22 2224589999999999994
Q ss_pred CCccCCC--cc--cEE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCc
Q psy2470 309 GVEPISQ--SY--LVE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNAT 378 (858)
Q Consensus 309 ~~~~~L~--~~--~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~ 378 (858)
.+...|. .+ .++ .|+. .|+...+. .+-...+++.|++++|||+ ++...++.|.. +|.
T Consensus 160 l~~~~l~~~~iKmfvlDEaDEmLs--------~gfkdqI~-~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~----~pv 226 (397)
T KOG0327|consen 160 LNRGSLSTDGIKMFVLDEADEMLS--------RGFKDQIY-DIFQELPSDVQVVLLSATMPSDVLEVTKKFMR----EPV 226 (397)
T ss_pred hccccccccceeEEeecchHhhhc--------cchHHHHH-HHHHHcCcchhheeecccCcHHHHHHHHHhcc----Cce
Confidence 3333332 22 233 5555 34443333 2223778899999999999 66777887774 454
Q ss_pred EEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 379 ILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 379 ~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
.+.+.... .-++++|...... +++.++..++. ...+.+||+||++.+..+...|... ++.+..+
T Consensus 227 ~i~vkk~~ltl~gikq~~i~v~k~----~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~-------~~~~s~~ 293 (397)
T KOG0327|consen 227 RILVKKDELTLEGIKQFYINVEKE----EKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAH-------GFTVSAI 293 (397)
T ss_pred EEEecchhhhhhheeeeeeecccc----ccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhC-------CceEEEe
Confidence 55554222 2344555543322 27778888887 4678999999999999999999766 8999999
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
||+|.|.+|..+++.|+.|..+||++||+++||+||.+++.||| || .|..+++|.||+||+|
T Consensus 294 ~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvin--------yd----------lP~~~~~yihR~gr~g 355 (397)
T KOG0327|consen 294 HGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVN--------YD----------LPARKENYIHRIGRAG 355 (397)
T ss_pred ecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeee--------ec----------cccchhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999 88 7888999999999999
Q ss_pred CCCC-ceEEEeh
Q psy2470 536 RVRS-GHVYRKN 546 (858)
Q Consensus 536 R~g~-G~~~rL~ 546 (858)
|.|. |.++.+.
T Consensus 356 r~grkg~~in~v 367 (397)
T KOG0327|consen 356 RFGRKGVAINFV 367 (397)
T ss_pred ccCCCceeeeee
Confidence 9998 9999988
|
|
| >PRK01297 ATP-dependent RNA helicase RhlB; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-34 Score=331.07 Aligned_cols=293 Identities=15% Similarity=0.139 Sum_probs=198.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE----eeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE----YISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~----~~~v 281 (858)
+.|+|||||| +||.+|.+...+......+ ......++|+++|||+||.|+++.+. ++....+.. +|+.
T Consensus 129 ~~apTGSGKT-----lay~lpil~~l~~~~~~~~--~~~~~~~aLil~PtreLa~Q~~~~~~-~l~~~~~~~v~~~~gg~ 200 (475)
T PRK01297 129 GRAQTGTGKT-----AAFLISIINQLLQTPPPKE--RYMGEPRALIIAPTRELVVQIAKDAA-ALTKYTGLNVMTFVGGM 200 (475)
T ss_pred EECCCCChHH-----HHHHHHHHHHHHhcCcccc--cccCCceEEEEeCcHHHHHHHHHHHH-HhhccCCCEEEEEEccC
Confidence 4699999999 6777775442211100000 00112468999999999999987663 333333333 1111
Q ss_pred eEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
.+...........++|+|+|||+|++ . .....++++.+| +.++ .++...+.+.+. .+ ....+.|+
T Consensus 201 ~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~----~~~~~~l~~i~~-~~--~~~~~~q~ 273 (475)
T PRK01297 201 DFDKQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLD----MGFIPQVRQIIR-QT--PRKEERQT 273 (475)
T ss_pred ChHHHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHh----cccHHHHHHHHH-hC--CCCCCceE
Confidence 11111111122457999999999998 3 234456666555 5666 444333333322 11 11236799
Q ss_pred EEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 354 IISSATV--DAEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 354 il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++||||+ ++..+++.+.. ++..+.+.... ..++.++...... .+...+.+++.....+++||||+++
T Consensus 274 i~~SAT~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~----~k~~~l~~ll~~~~~~~~IVF~~s~ 345 (475)
T PRK01297 274 LLFSATFTDDVMNLAKQWTT----DPAIVEIEPENVASDTVEQHVYAVAGS----DKYKLLYNLVTQNPWERVMVFANRK 345 (475)
T ss_pred EEEEeecCHHHHHHHHHhcc----CCEEEEeccCcCCCCcccEEEEEecch----hHHHHHHHHHHhcCCCeEEEEeCCH
Confidence 9999998 45566665553 44454443322 1223322222211 2344556666666667899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|.+. ++.+..+||++++++|.++++.|++|+.+||||||++++|||||+|++||+ |
T Consensus 346 ~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~--------~ 410 (475)
T PRK01297 346 DEVRRIEERLVKD-------GINAAQLSGDVPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVIN--------F 410 (475)
T ss_pred HHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEE--------e
Confidence 9999999999876 788999999999999999999999999999999999999999999999999 5
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+ .|-|.++|+||+|||||.|. |.++.++
T Consensus 411 ~----------~P~s~~~y~Qr~GRaGR~g~~g~~i~~~ 439 (475)
T PRK01297 411 T----------LPEDPDDYVHRIGRTGRAGASGVSISFA 439 (475)
T ss_pred C----------CCCCHHHHHHhhCccCCCCCCceEEEEe
Confidence 5 67899999999999999997 9999998
|
|
| >PRK02362 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-33 Score=338.81 Aligned_cols=410 Identities=15% Similarity=0.148 Sum_probs=258.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH--hCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE--MGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e--~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+.. + .. ...+++++|+|+||.|.++++.+. +|.+++.. .|.
T Consensus 44 v~APTGSGKT-----lia~lail~~----l---~~-----~~kal~i~P~raLa~q~~~~~~~~~~~g~~v~~~---tGd 103 (737)
T PRK02362 44 AAIPTASGKT-----LIAELAMLKA----I---AR-----GGKALYIVPLRALASEKFEEFERFEELGVRVGIS---TGD 103 (737)
T ss_pred EECCCcchHH-----HHHHHHHHHH----H---hc-----CCcEEEEeChHHHHHHHHHHHHHhhcCCCEEEEE---eCC
Confidence 5699999999 4444442221 1 11 124799999999999999888632 14343333 221
Q ss_pred EEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
..........++|+|+||+++.. +.+ ...++++.++ .++..+.-...+..++..+. ...++.|++++
T Consensus 104 -~~~~~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~-----~~~~~~qii~l 177 (737)
T PRK02362 104 -YDSRDEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLR-----RLNPDLQVVAL 177 (737)
T ss_pred -cCccccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHH-----hcCCCCcEEEE
Confidence 11111112357999999999877 332 2356666665 33330100111222233333 34567999999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeE--------EEecC---CccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSV--------YYSND---PVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~--------~~~~~---~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
|||+ +.+.+++|++.. .+....+..+... .+... ............+.+.+. ..+++|||
T Consensus 178 SATl~n~~~la~wl~~~------~~~~~~rpv~l~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF 249 (737)
T PRK02362 178 SATIGNADELADWLDAE------LVDSEWRPIDLREGVFYGGAIHFDDSQREVEVPSKDDTLNLVLDTLE--EGGQCLVF 249 (737)
T ss_pred cccCCCHHHHHHHhCCC------cccCCCCCCCCeeeEecCCeeccccccccCCCccchHHHHHHHHHHH--cCCCeEEE
Confidence 9999 889999998731 1111111111111 11110 000001233444444443 46899999
Q ss_pred cCCHHHHHHHHHHHHHhccC--------------------CC---------CcceEEEeccCCCCHHHHHHhcCCCCCCc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQ--------------------RE---------DLKLLILPMHGSLPNNEQIKVFRPTPRAM 475 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~--------------------~~---------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~ 475 (858)
|+++++++.+++.|...... .+ .-...+..+||+|++++|..+++.|++|.
T Consensus 250 ~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~ 329 (737)
T PRK02362 250 VSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL 329 (737)
T ss_pred EeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC
Confidence 99999999999998743110 00 00135788999999999999999999999
Q ss_pred EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEehhh---H
Q psy2470 476 RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKNFM---Y 549 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~~~---~ 549 (858)
++|||||+++++|+|+|++++||+. ...||+..|. .|++..+|.||+|||||.|. |.|+-+... .
T Consensus 330 i~VLvaT~tla~GvnlPa~~VVI~~----~~~yd~~~g~-----~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~~~~~~ 400 (737)
T PRK02362 330 IKVISSTPTLAAGLNLPARRVIIRD----YRRYDGGAGM-----QPIPVLEYHQMAGRAGRPGLDPYGEAVLLAKSYDEL 400 (737)
T ss_pred CeEEEechhhhhhcCCCceEEEEec----ceeecCCCCc-----eeCCHHHHHHHhhcCCCCCCCCCceEEEEecCchhH
Confidence 9999999999999999999999973 3458866553 68999999999999999985 999998822 3
Q ss_pred hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHH
Q psy2470 550 NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEE 621 (858)
Q Consensus 550 ~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~ 621 (858)
..+.++|+ .++|+...+.|.++..++.++......+.+.. ..+++..+...-..++..+..+++
T Consensus 401 ~~~~~~~l--------~~~~~~i~S~l~~~~~l~~~lla~I~~~~~~~~~d~~~~l~~Tf~~~~~~~~~~l~~~v~~~l~ 472 (737)
T PRK02362 401 DELFERYI--------WADPEDVRSKLATEPALRTHVLSTIASGFARTRDGLLEFLEATFYATQTDDTGRLERVVDDVLD 472 (737)
T ss_pred HHHHHHHH--------hCCCCceeecCCChhhHHHHHHHHHHhCccCCHHHHHHHHHhChHHhhccchHHHHHHHHHHHH
Confidence 33333232 23488899999877777755544443221111 011222222222244557889999
Q ss_pred HHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 622 LRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 622 ~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
.|.+.|++ . .++.....| ++|+.++.+|++|..+.. |.+.+...+
T Consensus 473 ~L~~~~~i-----~-~~~~~~~~t-----~lG~~~s~~~l~~~t~~~---~~~~l~~~~ 517 (737)
T PRK02362 473 FLERNGMI-----E-EDGETLEAT-----ELGHLVSRLYIDPLSAAE---IIDGLEAAK 517 (737)
T ss_pred HHHHCCCe-----e-ecCCeEeEC-----hHHHHHHHhcCCHHHHHH---HHHHhhhcc
Confidence 99999999 4 222222345 999999999999999887 555555443
|
|
| >KOG0334|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-34 Score=331.62 Aligned_cols=305 Identities=15% Similarity=0.167 Sum_probs=226.6
Q ss_pred HHHhcCCCCc-ccc------------chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHH
Q psy2470 191 VRRALDFPDM-PYQ------------LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDV 257 (858)
Q Consensus 191 ~~~~~~~~~~-~~~------------~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~ 257 (858)
..+.|+...+ |+| +--+|.|||||| .||.||.+. ....|+....|+ .+.+||++||||
T Consensus 379 tlkkl~y~k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT-----~af~LPmir---hi~dQr~~~~gd-GPi~li~aPtre 449 (997)
T KOG0334|consen 379 TLKKLGYEKPTPIQAQAIPAIMSGRDVIGVAKTGSGKT-----LAFLLPMIR---HIKDQRPLEEGD-GPIALILAPTRE 449 (997)
T ss_pred HHHHhcCCCCcchhhhhcchhccCcceEEeeccCCccc-----hhhhcchhh---hhhcCCChhhCC-CceEEEEcCCHH
Confidence 3377777666 888 334899999999 999999884 344565555566 456899999999
Q ss_pred HHHHHHHHH---HHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc--CCCccC---CCcccEE------Eec
Q psy2470 258 ACSCTVVEF---LTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD--SGVEPI---SQSYLVE------LSI 323 (858)
Q Consensus 258 la~qva~~v---~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~---L~~~~vl------R~l 323 (858)
+|.||.+.+ ++.+|.++...||+.|..-+.... ..++.|+||||||.+| ..+... |.+..++ ||+
T Consensus 450 la~QI~r~~~kf~k~l~ir~v~vygg~~~~~qiael-kRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmf 528 (997)
T KOG0334|consen 450 LAMQIHREVRKFLKLLGIRVVCVYGGSGISQQIAEL-KRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMF 528 (997)
T ss_pred HHHHHHHHHHHHHhhcCceEEEecCCccHHHHHHHH-hcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhh
Confidence 999997654 445566666665555533222222 2459999999999999 333333 3333344 999
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCc
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPV 398 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~ 398 (858)
+ +.|.....+++. ..++++|+++||||+ .++.++.-... .|.-+.+.++. ..|++.+.....
T Consensus 529 d----mgfePq~~~Ii~-----nlrpdrQtvlfSatfpr~m~~la~~vl~----~Pveiiv~~~svV~k~V~q~v~V~~~ 595 (997)
T KOG0334|consen 529 D----MGFEPQITRILQ-----NLRPDRQTVLFSATFPRSMEALARKVLK----KPVEIIVGGRSVVCKEVTQVVRVCAI 595 (997)
T ss_pred e----eccCcccchHHh-----hcchhhhhhhhhhhhhHHHHHHHHHhhc----CCeeEEEccceeEeccceEEEEEecC
Confidence 9 777766666555 789999999999999 55667776653 23335565553 233333333221
Q ss_pred cchHHHHHHHHHHHH-hhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 399 VNYVQGVVDTAIKIH-ESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 399 ~~~~~~~~~~l~~i~-~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
. ..++..++.++ .....+++||||..++.|+.|.+.|.+. ++.+..|||+.+|.+|..+++.||+|..+
T Consensus 596 e---~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a-------g~~~~slHGgv~q~dR~sti~dfK~~~~~ 665 (997)
T KOG0334|consen 596 E---NEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA-------GYNCDSLHGGVDQHDRSSTIEDFKNGVVN 665 (997)
T ss_pred c---hHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc-------CcchhhhcCCCchHHHHhHHHHHhccCce
Confidence 1 12222222222 3334799999999999999999999977 99999999999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+||||++++||+|++++..||| || .|-..+.|+||+|||||+|+ |.||.+.
T Consensus 666 LLvaTsvvarGLdv~~l~Lvvn--------yd----------~pnh~edyvhR~gRTgragrkg~AvtFi 717 (997)
T KOG0334|consen 666 LLVATSVVARGLDVKELILVVN--------YD----------FPNHYEDYVHRVGRTGRAGRKGAAVTFI 717 (997)
T ss_pred EEEehhhhhcccccccceEEEE--------cc----------cchhHHHHHHHhcccccCCccceeEEEe
Confidence 9999999999999999999999 77 66667789999999999998 9999988
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=330.96 Aligned_cols=406 Identities=14% Similarity=0.109 Sum_probs=246.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||+++ .++.+. .+ ..| ..+++++|+|++|.|.++++.+ +. ..|.. |+..
T Consensus 41 lv~apTGSGKTl~a-----~lail~----~l---~~~-----~k~v~i~P~raLa~q~~~~~~~-l~-~~g~~---v~~~ 98 (674)
T PRK01172 41 IVSVPTAAGKTLIA-----YSAIYE----TF---LAG-----LKSIYIVPLRSLAMEKYEELSR-LR-SLGMR---VKIS 98 (674)
T ss_pred EEECCCCchHHHHH-----HHHHHH----HH---HhC-----CcEEEEechHHHHHHHHHHHHH-Hh-hcCCe---EEEE
Confidence 35799999999332 222111 11 111 2468899999999999988764 21 23444 4433
Q ss_pred Eeccce---eecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
++..+. ..+.++|+|+|||++.. +..++ .+++++++ .++..+.....+..++..+. ..+++.|+|
T Consensus 99 ~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~-----~~~~~~riI 173 (674)
T PRK01172 99 IGDYDDPPDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR-----YVNPDARIL 173 (674)
T ss_pred eCCCCCChhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH-----hcCcCCcEE
Confidence 322111 11357999999999877 44443 36667666 33320100112223333333 446789999
Q ss_pred EEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEE--EecCCcc----chHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 355 ISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVY--YSNDPVV----NYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 355 l~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~--~~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
+||||+ +.+++++|++ ++.+....+..|++.. +...... .........+.... ...+++|||+++
T Consensus 174 ~lSATl~n~~~la~wl~------~~~~~~~~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~--~~~~~vLVF~~s 245 (674)
T PRK01172 174 ALSATVSNANELAQWLN------ASLIKSNFRPVPLKLGILYRKRLILDGYERSQVDINSLIKETV--NDGGQVLVFVSS 245 (674)
T ss_pred EEeCccCCHHHHHHHhC------CCccCCCCCCCCeEEEEEecCeeeecccccccccHHHHHHHHH--hCCCcEEEEecc
Confidence 999999 8999999987 3334334444444422 1111000 00001122222222 246899999999
Q ss_pred HHHHHHHHHHHHHhccCCC------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 428 LEQIEHIIGILKQYHNQRE------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
+++++.+++.|.+...... .-...+..+||+|++++|..+++.|++|.++|||||+++++|+
T Consensus 246 r~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~i~VLvaT~~la~Gv 325 (674)
T PRK01172 246 RKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRYIKVIVATPTLAAGV 325 (674)
T ss_pred HHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCCCeEEEecchhhccC
Confidence 9999999999975311000 0012477889999999999999999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh---hhHhhhhhhhhccCCCC
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN---FMYNRLFIHFCVSRNIP 563 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~---~~~~~l~~~~~~~~~~p 563 (858)
|+|+..+||+ +. ..|+.. ...|+|..+|.||+|||||.| .|.++.+. ++++.+.. |+
T Consensus 326 nipa~~VII~-~~---~~~~~~------~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~~~~~~~~~~~-~l------ 388 (674)
T PRK01172 326 NLPARLVIVR-DI---TRYGNG------GIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAASPASYDAAKK-YL------ 388 (674)
T ss_pred CCcceEEEEc-Cc---eEeCCC------CceeCCHHHHHHHhhcCCCCCCCCcceEEEEecCcccHHHHHH-HH------
Confidence 9999887775 22 234421 126899999999999999988 37776654 22333322 22
Q ss_pred CCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHHHHHhcCCeeeeeee
Q psy2470 564 TIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIR 635 (858)
Q Consensus 564 ~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~~L~~lg~lv~y~v~ 635 (858)
.++|+...+.|......+..+......+.+.. ..++...+.. .+.++..+..+++.|.+.|++ +
T Consensus 389 --~~~~~pi~S~l~~~~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~-~~~l~~~v~~~l~~L~~~~~i-----~ 460 (674)
T PRK01172 389 --SGEPEPVISYMGSQRKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNG-VDEIDYYIESSLKFLKENGFI-----K 460 (674)
T ss_pred --cCCCCceeecCCCcccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCc-hHHHHHHHHHHHHHHHHCCCc-----c
Confidence 23378778877754444422111111111100 0012211211 123445688999999999999 4
Q ss_pred cCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 636 FDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 636 ~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
++. ....| ++|+.++.+|++|..+.. +++.+.+.+
T Consensus 461 -~~~-~~~~t-----~lG~~~s~~~l~~~t~~~---~~~~l~~~~ 495 (674)
T PRK01172 461 -GDV-TLRAT-----RLGKLTSDLYIDPESALI---LKSAFDHDY 495 (674)
T ss_pred -cCC-cEeEC-----HHHHHHHHhCCCHHHHHH---HHHHhhccC
Confidence 222 12356 999999999999999987 555555543
|
|
| >PTZ00424 helicase 45; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=313.81 Aligned_cols=285 Identities=13% Similarity=0.162 Sum_probs=194.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~~ 284 (858)
+.|+|||||| .++.+|.+.. +... ....++|+++|||+||.|+.+.+ ..++...+..... +|..
T Consensus 70 i~apTGsGKT-----~~~~l~~l~~----~~~~-----~~~~~~lil~Pt~~L~~Q~~~~~-~~~~~~~~~~~~~~~g~~ 134 (401)
T PTZ00424 70 GQAQSGTGKT-----ATFVIAALQL----IDYD-----LNACQALILAPTRELAQQIQKVV-LALGDYLKVRCHACVGGT 134 (401)
T ss_pred EECCCCChHH-----HHHHHHHHHH----hcCC-----CCCceEEEECCCHHHHHHHHHHH-HHHhhhcCceEEEEECCc
Confidence 4699999999 4444443331 1111 12235899999999999997655 3334333333100 2211
Q ss_pred Eecc--ceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKG--RMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~--~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
...+ .....+++|+|+|||+|.+ +.. ...++++.++ +.++ .++...+.+.+. ..+++.|++
T Consensus 135 ~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~i 205 (401)
T PTZ00424 135 VVRDDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLS----RGFKGQIYDVFK-----KLPPDVQVA 205 (401)
T ss_pred CHHHHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHh----cchHHHHHHHHh-----hCCCCcEEE
Confidence 1111 1112347999999999998 433 2346666655 4444 333322333332 456789999
Q ss_pred EEecccC--HHHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 355 ISSATVD--AEEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 355 l~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
++|||+. ...+...+.. ++..+.+.... ..++.++...... +.....+..+......+++||||++++
T Consensus 206 ~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~ivF~~t~~ 278 (401)
T PTZ00424 206 LFSATMPNEILELTTKFMR----DPKRILVKKDELTLEGIRQFYVAVEKE---EWKFDTLCDLYETLTITQAIIYCNTRR 278 (401)
T ss_pred EEEecCCHHHHHHHHHHcC----CCEEEEeCCCCcccCCceEEEEecChH---HHHHHHHHHHHHhcCCCeEEEEecCcH
Confidence 9999994 3444444442 34444443322 2233444332221 223444555555555678999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
.++.+++.|... ++.+..+||++++++|..+++.|++|+.+|||||+++++|||||+|++||+ ||
T Consensus 279 ~~~~l~~~l~~~-------~~~~~~~h~~~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~--------~~ 343 (401)
T PTZ00424 279 KVDYLTKKMHER-------DFTVSCMHGDMDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVIN--------YD 343 (401)
T ss_pred HHHHHHHHHHHC-------CCcEEEEeCCCCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEE--------EC
Confidence 999999999866 788999999999999999999999999999999999999999999999999 66
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|..+|.||+|||||.|. |.||.++
T Consensus 344 ----------~p~s~~~y~qr~GRagR~g~~G~~i~l~ 371 (401)
T PTZ00424 344 ----------LPASPENYIHRIGRSGRFGRKGVAINFV 371 (401)
T ss_pred ----------CCCCHHHEeecccccccCCCCceEEEEE
Confidence 57889999999999999986 9999999
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=335.79 Aligned_cols=105 Identities=45% Similarity=0.686 Sum_probs=102.5
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCC-CCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIH-NILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~-~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||+|||||||++|+.|++++.|||+|+||++++|+||+||++ |+..|+|+||||..++..|++.|+.|||+|++|+||
T Consensus 377 pGicyRLyse~~~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~~~~i~~A~~~L~~LGAld~~g~LT- 455 (845)
T COG1643 377 PGICYRLYSEEDFLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPPEAAIQAALTLLQELGALDDSGKLT- 455 (845)
T ss_pred CceEEEecCHHHHHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCChHHHHHHHHHHHHcCCcCCCCCCC-
Confidence 999999999999999999999999999999999999999995 999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
++|++|+.||+||++|+||+.+++.+|
T Consensus 456 ~lG~~ms~lpldprLA~mLl~a~~~g~ 482 (845)
T COG1643 456 PLGKQMSLLPLDPRLARMLLTAPEGGC 482 (845)
T ss_pred HHHHHHHhCCCChHHHHHHHhccccCc
Confidence 799999999999999999999988664
|
|
| >TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase | Back alignment and domain information |
|---|
Probab=99.98 E-value=3.2e-31 Score=320.01 Aligned_cols=296 Identities=14% Similarity=0.050 Sum_probs=193.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| +||.+|.+..... ++..++|++.|||+||.|+.+++. +++ ..+......+...
T Consensus 56 v~apTGSGKT-----la~~LPiL~~l~~----------~~~~~aL~l~PtraLa~q~~~~l~-~l~-~~~i~v~~~~Gdt 118 (742)
T TIGR03817 56 VATGTASGKS-----LAYQLPVLSALAD----------DPRATALYLAPTKALAADQLRAVR-ELT-LRGVRPATYDGDT 118 (742)
T ss_pred EECCCCCcHH-----HHHHHHHHHHHhh----------CCCcEEEEEcChHHHHHHHHHHHH-Hhc-cCCeEEEEEeCCC
Confidence 4699999999 8888886553211 122468999999999999988774 443 2233311111111
Q ss_pred eccc--eeecceeEEEeecCcccc-CCCc-----cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGR--MKILVSKIFKMSQGKPSD-SGVE-----PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~--~~~~~t~I~v~TpGrLl~-~~~~-----~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
..+. .....++|+++||++|.. ++.+ ..++++.++ ++.+ ..+.+ +..+++.+. .+....+.+.
T Consensus 119 ~~~~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g-~fg~~-~~~il~rL~-ri~~~~g~~~ 195 (742)
T TIGR03817 119 PTEERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRG-VFGSH-VALVLRRLR-RLCARYGASP 195 (742)
T ss_pred CHHHHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccC-ccHHH-HHHHHHHHH-HHHHhcCCCC
Confidence 1111 112458999999999876 3321 125555544 4332 01111 122333332 1112335678
Q ss_pred eEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEecCCc------------cchHHHHHHHHHHHHhh
Q psy2470 352 KLIISSATV-DAEEICQFYNISASSNATILSVKGHLY---PVSVYYSNDPV------------VNYVQGVVDTAIKIHES 415 (858)
Q Consensus 352 q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~~~------------~~~~~~~~~~l~~i~~~ 415 (858)
|+++||||+ +..++++++.. .++..+..... ..+..+...+. ......+...+..+...
T Consensus 196 q~i~~SATi~n~~~~~~~l~g-----~~~~~i~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~ 270 (742)
T TIGR03817 196 VFVLASATTADPAAAASRLIG-----APVVAVTEDGSPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE 270 (742)
T ss_pred EEEEEecCCCCHHHHHHHHcC-----CCeEEECCCCCCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC
Confidence 999999999 66667766652 33433432211 12222222110 11122344555555543
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
..++|||++|++.++.+++.|++... .....+..+..+||++++++|.++++.|++|+.++|||||++|+|||||+|
T Consensus 271 --~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~v 348 (742)
T TIGR03817 271 --GARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALRDGELLGVATTNALELGVDISGL 348 (742)
T ss_pred --CCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHHcCCceEEEECchHhccCCcccc
Confidence 57899999999999999999875311 111125678899999999999999999999999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++||| |+ .|-+.++|+||+|||||.|. |.++.+.
T Consensus 349 d~VI~--------~~----------~P~s~~~y~qRiGRaGR~G~~g~ai~v~ 383 (742)
T TIGR03817 349 DAVVI--------AG----------FPGTRASLWQQAGRAGRRGQGALVVLVA 383 (742)
T ss_pred cEEEE--------eC----------CCCCHHHHHHhccccCCCCCCcEEEEEe
Confidence 99999 55 67889999999999999998 9999876
|
A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA. |
| >KOG0346|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-32 Score=288.20 Aligned_cols=336 Identities=14% Similarity=0.148 Sum_probs=236.7
Q ss_pred hhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccc
Q psy2470 123 ETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPY 202 (858)
Q Consensus 123 ~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 202 (858)
+..++|.+||++=+.+ .+...++|.-.|.+.+...|.+.+ .++
T Consensus 19 ktFe~~gLD~RllkAi---------------------~~lG~ekpTlIQs~aIplaLEgKD--vva-------------- 61 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAI---------------------TKLGWEKPTLIQSSAIPLALEGKD--VVA-------------- 61 (569)
T ss_pred ccHHHhCCCHHHHHHH---------------------HHhCcCCcchhhhcccchhhcCcc--eee--------------
Confidence 3456677777654444 334456789999999999998863 232
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH---HhCCcCccEee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT---EMGCRMDFEYI 279 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~---e~g~~~g~~~~ 279 (858)
-|.|||||| +||++|.++..+. ...++.+...+.++|++||||||+|+...+.+ ..+..+....+
T Consensus 62 ----rArTGSGKT-----~AYliPllqkll~---~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl 129 (569)
T KOG0346|consen 62 ----RARTGSGKT-----AAYLIPLLQKLLA---EKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINL 129 (569)
T ss_pred ----eeccCCCch-----HHHHHHHHHHHHH---hhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 289999999 9999997775433 23343445567789999999999999765532 22211111000
Q ss_pred e--eeEEEeccceeecceeEEEeecCcccc-CCCcc--CCCcccEEEecCCCCCchhh--hhHHHHHHHHhcccCCCCce
Q psy2470 280 S--RGYMFRKGRMKILVSKIFKMSQGKPSD-SGVEP--ISQSYLVELSILAPGGQDVI--GEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 280 ~--vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~--~L~~~~vlR~l~~~~~~d~l--l~~lk~~~~~l~~~~~~~~q 352 (858)
+ ..-.+.. ......++|+|+|||++++ ...+. .++.++++-+=+ .|.+ .|..+++. .+....|+..|
T Consensus 130 ~s~~sdsv~~-~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDE----ADLllsfGYeedlk-~l~~~LPr~~Q 203 (569)
T KOG0346|consen 130 ASSMSDSVNS-VALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDE----ADLLLSFGYEEDLK-KLRSHLPRIYQ 203 (569)
T ss_pred hcccchHHHH-HHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEech----hhhhhhcccHHHHH-HHHHhCCchhh
Confidence 0 0000000 1112458999999999999 54443 344444441111 2222 55555554 33346788999
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeec----ceeEEEecCCccchHHHHHHHHHHHHh-hCCCCCEEEEc
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGHLY----PVSVYYSNDPVVNYVQGVVDTAIKIHE-SMPVGDILAFV 425 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~----~v~~~~~~~~~~~~~~~~~~~l~~i~~-~~~~g~iLVFl 425 (858)
.+|||||+ |+..+.+.|.+ +|.++.+....- .+.+++......|.. -.++.+++ ..-.|++|||+
T Consensus 204 ~~LmSATl~dDv~~LKkL~l~----nPviLkl~e~el~~~dqL~Qy~v~cse~DKf----lllyallKL~LI~gKsliFV 275 (569)
T KOG0346|consen 204 CFLMSATLSDDVQALKKLFLH----NPVILKLTEGELPNPDQLTQYQVKCSEEDKF----LLLYALLKLRLIRGKSLIFV 275 (569)
T ss_pred heeehhhhhhHHHHHHHHhcc----CCeEEEeccccCCCcccceEEEEEeccchhH----HHHHHHHHHHHhcCceEEEE
Confidence 99999999 88899998885 555666554332 355666655544432 22222221 22368999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC----------------------
Q psy2470 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN---------------------- 483 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd---------------------- 483 (858)
||.+.+-++.-.|++. |++.+.|.|.||+..|.-++++|-.|...||+|||
T Consensus 276 NtIdr~YrLkLfLeqF-------GiksciLNseLP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~k 348 (569)
T KOG0346|consen 276 NTIDRCYRLKLFLEQF-------GIKSCILNSELPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPK 348 (569)
T ss_pred echhhhHHHHHHHHHh-------CcHhhhhcccccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCC
Confidence 9999999998889888 99999999999999999999999999999999999
Q ss_pred -------------cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 -------------IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 -------------vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
=++||||...|..||| || .|.+..+|+||+|||||.++ |.+.++.
T Consensus 349 ndkkskkK~D~E~GVsRGIDF~~V~~VlN--------FD----------~P~t~~sYIHRvGRTaRg~n~GtalSfv 407 (569)
T KOG0346|consen 349 NDKKSKKKLDKESGVSRGIDFHHVSNVLN--------FD----------FPETVTSYIHRVGRTARGNNKGTALSFV 407 (569)
T ss_pred CccccccccCchhchhccccchheeeeee--------cC----------CCCchHHHHHhccccccCCCCCceEEEe
Confidence 1469999999999999 77 78899999999999999987 9999988
|
|
| >KOG4284|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=294.51 Aligned_cols=319 Identities=14% Similarity=0.136 Sum_probs=230.5
Q ss_pred HHhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccc
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQL 232 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l 232 (858)
..-+.|+..+++.-|.+.|...+...+-..+ +-+.|+.|||||++|+.+|..--
T Consensus 34 r~vl~glrrn~f~~ptkiQaaAIP~~~~kmD--------------------liVQaKSGTGKTlVfsv~av~sl------ 87 (980)
T KOG4284|consen 34 REVLLGLRRNAFALPTKIQAAAIPAIFSKMD--------------------LIVQAKSGTGKTLVFSVLAVESL------ 87 (980)
T ss_pred HHHHHHHHhhcccCCCchhhhhhhhhhcccc--------------------eEEEecCCCCceEEEEeeeehhc------
Confidence 4567899999999898888887776654421 22458999999955555543321
Q ss_pred cccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHH----hCCcCccEeeeeeEEE-eccceeecceeEEEeecCcccc
Q psy2470 233 RYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTE----MGCRMDFEYISRGYMF-RKGRMKILVSKIFKMSQGKPSD 307 (858)
Q Consensus 233 ~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e----~g~~~g~~~~~vG~~v-r~~~~~~~~t~I~v~TpGrLl~ 307 (858)
. ......+.+|++||||+|.||-..|.+- .|.++..- +|..- ..+...-+.++|+|+||||+++
T Consensus 88 ------~--~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvf---IGGT~~~~d~~rlk~~rIvIGtPGRi~q 156 (980)
T KOG4284|consen 88 ------D--SRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVF---IGGTAHKLDLIRLKQTRIVIGTPGRIAQ 156 (980)
T ss_pred ------C--cccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEE---ecCchhhhhhhhhhhceEEecCchHHHH
Confidence 0 1123356799999999999997766433 23333333 33221 1222222568999999999999
Q ss_pred CC--CccCCCccc--EE----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--H-HHHHHHhhcccCCC
Q psy2470 308 SG--VEPISQSYL--VE----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--A-EEICQFYNISASSN 376 (858)
Q Consensus 308 ~~--~~~~L~~~~--vl----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~-~~~~~~~~~~~~~~ 376 (858)
+. +-.+.+++. |+ ..++ ++.+ ..++- .|...+|..+|++.||||.+ . +.+++|+. +
T Consensus 157 L~el~~~n~s~vrlfVLDEADkL~~----t~sf---q~~In-~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mr-----d 223 (980)
T KOG4284|consen 157 LVELGAMNMSHVRLFVLDEADKLMD----TESF---QDDIN-IIINSLPQIRQVAAFSATYPRNLDNLLSKFMR-----D 223 (980)
T ss_pred HHHhcCCCccceeEEEeccHHhhhc----hhhH---HHHHH-HHHHhcchhheeeEEeccCchhHHHHHHHHhc-----c
Confidence 32 222333332 22 3334 3322 22222 22336788999999999993 3 45666766 5
Q ss_pred CcEEEecCe---ecceeEEEecCCccc----hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcc
Q psy2470 377 ATILSVKGH---LYPVSVYYSNDPVVN----YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLK 449 (858)
Q Consensus 377 ~~~i~v~g~---~~~v~~~~~~~~~~~----~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~ 449 (858)
|..+....+ .+.+++||......+ ....++..|-++...-+..+.|||++....++.++..|... |
T Consensus 224 p~lVr~n~~d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ss-------G 296 (980)
T KOG4284|consen 224 PALVRFNADDVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSS-------G 296 (980)
T ss_pred cceeecccCCceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhcc-------C
Confidence 666665433 356677766544432 23456677778888888889999999999999999999876 9
Q ss_pred eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHH
Q psy2470 450 LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQ 529 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~q 529 (858)
+.|..+.|.|+|.+|..+++..+.-..|||||||+.+||||-|+|.+||| .| .|.+.++|.|
T Consensus 297 ~d~~~ISgaM~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVN--------iD----------~p~d~eTY~H 358 (980)
T KOG4284|consen 297 LDVTFISGAMSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVN--------ID----------APADEETYFH 358 (980)
T ss_pred CCeEEeccccchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEe--------cC----------CCcchHHHHH
Confidence 99999999999999999999999999999999999999999999999999 66 7888999999
Q ss_pred hhcccCCCCC-ceEEEeh
Q psy2470 530 RAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 530 R~GRaGR~g~-G~~~rL~ 546 (858)
|+|||||.|. |.++++.
T Consensus 359 RIGRAgRFG~~G~aVT~~ 376 (980)
T KOG4284|consen 359 RIGRAGRFGAHGAAVTLL 376 (980)
T ss_pred HhhhcccccccceeEEEe
Confidence 9999999998 9999988
|
|
| >KOG0926|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-32 Score=308.12 Aligned_cols=104 Identities=38% Similarity=0.628 Sum_probs=101.2
Q ss_pred ccceeeccCHHHHh-ccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcch
Q psy2470 41 SRKFSRLYTEASFS-QLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTK 119 (858)
Q Consensus 41 ~g~c~rLy~~~~~~-~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~ 119 (858)
||+||||||...|+ .|.+++.|||++++.+++|||||+|+|+++.+|||++||...+|+.|.+.|..|||||.+|.||
T Consensus 694 pGHcYRLYSSAVf~~~Fe~fS~PEIlk~Pve~lvLqMKsMnI~kVvnFPFPtpPd~~~L~~Aer~L~~LgALd~~g~lT- 772 (1172)
T KOG0926|consen 694 PGHCYRLYSSAVFSNDFEEFSLPEILKKPVESLVLQMKSMNIDKVVNFPFPTPPDRSALEKAERRLKALGALDSNGGLT- 772 (1172)
T ss_pred CCceeehhhhHHhhcchhhhccHHHhhCcHHHHHHHHHhcCccceecCCCCCCccHHHHHHHHHHHHHhccccccCCcc-
Confidence 99999999999996 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhcCCCCchhhhHHhhccccc
Q psy2470 120 PVGETMAEMPLHPIHAKVLLSSGSVL 145 (858)
Q Consensus 120 ~lG~~ma~lp~~p~~~~~l~~s~s~~ 145 (858)
+||++|+.||+.|++||||+.+..+.
T Consensus 773 ~lGk~mS~FPlsPrfsKmL~~~~Q~~ 798 (1172)
T KOG0926|consen 773 KLGKAMSLFPLSPRFSKMLATSDQHN 798 (1172)
T ss_pred cccchhcccccChhHHHHHHHHHhhc
Confidence 69999999999999999999887765
|
|
| >PRK00254 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-30 Score=313.73 Aligned_cols=398 Identities=14% Similarity=0.077 Sum_probs=241.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH--HhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT--EMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~--e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+... . +. ...+++++|+|++|.|.++++.+ .+|.+++.. .|.
T Consensus 44 v~apTGsGKT-----~~~~l~il~~l---~---~~-----~~~~l~l~P~~aLa~q~~~~~~~~~~~g~~v~~~---~Gd 104 (720)
T PRK00254 44 LAIPTASGKT-----LVAEIVMVNKL---L---RE-----GGKAVYLVPLKALAEEKYREFKDWEKLGLRVAMT---TGD 104 (720)
T ss_pred EECCCCcHHH-----HHHHHHHHHHH---H---hc-----CCeEEEEeChHHHHHHHHHHHHHHhhcCCEEEEE---eCC
Confidence 4699999999 44444433211 1 01 12579999999999999988753 233333332 121
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
..........++|+|+||+++.. +. ....++++.++ .+.+ .+.-..+...+. ...++.|+|+
T Consensus 105 -~~~~~~~~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~----~~rg~~le~il~-----~l~~~~qiI~ 174 (720)
T PRK00254 105 -YDSTDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGS----YDRGATLEMILT-----HMLGRAQILG 174 (720)
T ss_pred -CCCchhhhccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCC----ccchHHHHHHHH-----hcCcCCcEEE
Confidence 11111112457999999999877 32 23456666655 3333 222222222222 3456789999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeeccee--EEEe-----cCC-ccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVS--VYYS-----NDP-VVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~--~~~~-----~~~-~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+|||+ +.+.+++|++. ..+....+..|.. +++. ... ...+.......+.+... ..+++|||++
T Consensus 175 lSATl~n~~~la~wl~~------~~~~~~~rpv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~ 246 (720)
T PRK00254 175 LSATVGNAEELAEWLNA------ELVVSDWRPVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVN 246 (720)
T ss_pred EEccCCCHHHHHHHhCC------ccccCCCCCCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEc
Confidence 99999 89999999873 2222222222221 1111 110 01111222333444443 3578999999
Q ss_pred CHHHHHHHHHHHHHhcc----CC----------------C------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 427 GLEQIEHIIGILKQYHN----QR----------------E------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~----~~----------------~------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
|+++++.++..|.+... .. . .-...|..+||+|++++|..+++.|++|.++|||
T Consensus 247 sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~i~VLv 326 (720)
T PRK00254 247 TRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGLIKVIT 326 (720)
T ss_pred ChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCCCeEEE
Confidence 99999998877753200 00 0 0123588999999999999999999999999999
Q ss_pred ecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhh
Q psy2470 481 ATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIH 555 (858)
Q Consensus 481 ATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~ 555 (858)
||+++++|+|+|++++||... ..|+ ..|. .+.+..+|.||+|||||.| .|.|+.+. ++...+-++
T Consensus 327 aT~tLa~Gvnipa~~vVI~~~----~~~~-~~~~-----~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~~~~~~~~~ 396 (720)
T PRK00254 327 ATPTLSAGINLPAFRVIIRDT----KRYS-NFGW-----EDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTEEPSKLMER 396 (720)
T ss_pred eCcHHhhhcCCCceEEEECCc----eEcC-CCCc-----eeCCHHHHHHhhhccCCCCcCCCceEEEEecCcchHHHHHH
Confidence 999999999999999999633 2354 2222 3566789999999999976 39999887 221222332
Q ss_pred hhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHh--------HhhhCCCCCcccccCCchHHHHHHHHHhcC
Q psy2470 556 FCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYD--------TKLIGITEPRRISVTSLANRVSEELRTTLG 627 (858)
Q Consensus 556 ~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~--------~~~~~~~~~~~~~~l~~a~~~a~~~L~~lg 627 (858)
|+ .++||.+.+.+..+..++.++........+-. ..+++..+......+...+..++..|.+.+
T Consensus 397 ~~--------~~~pe~l~s~l~~es~l~~~ll~~i~~~~~~~~~~~~~~l~~Tf~~~~~~~~~~~~~~v~~~l~~L~~~~ 468 (720)
T PRK00254 397 YI--------FGKPEKLFSMLSNESAFRSQVLALITNFGVSNFKELVNFLERTFYAHQRKDLYSLEEKAKEIVYFLLENE 468 (720)
T ss_pred HH--------hCCchhhhccCCchHHHHHHHHHHHHhCCCCCHHHHHHHHHhCHHHHhhcChHhHHHHHHHHHHHHHHCC
Confidence 33 24488888888877778755544443321110 011211111111112224566777888888
Q ss_pred CeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 628 HTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 628 ~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
++ ..+.......| ++|+.++.++++|..++.
T Consensus 469 ~i-----~~~~~~~~~~t-----~lG~~~s~~~i~~~t~~~ 499 (720)
T PRK00254 469 FI-----DIDLEDRFIPL-----PLGIRTSQLYIDPLTAKK 499 (720)
T ss_pred Ce-----EEcCCCCEeeC-----hHHHHHHHHhCCHHHHHH
Confidence 87 42221212245 999999999999999887
|
|
| >KOG0350|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=6e-31 Score=284.74 Aligned_cols=291 Identities=15% Similarity=0.138 Sum_probs=201.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+-|+|||||| +||.||-.+ .+++.. -..-+++|+.|||+||.||+..+ +++....|.. |+-
T Consensus 186 IcV~ApTGSGKT-----LaY~iPIVQ----~L~~R~----v~~LRavVivPtr~L~~QV~~~f-~~~~~~tgL~---V~~ 248 (620)
T KOG0350|consen 186 ICVNAPTGSGKT-----LAYVIPIVQ----LLSSRP----VKRLRAVVIVPTRELALQVYDTF-KRLNSGTGLA---VCS 248 (620)
T ss_pred eEEecCCCCCce-----eeehhHHHH----HHccCC----ccceEEEEEeeHHHHHHHHHHHH-HHhccCCceE---EEe
Confidence 445699999999 888999655 222211 12346899999999999998877 4555566666 554
Q ss_pred EEeccceee-------c----ceeEEEeecCcccc-CCCcc--CCC--cccEE----EecCCCCCchhhhhHHHHHHHHh
Q psy2470 284 MFRKGRMKI-------L----VSKIFKMSQGKPSD-SGVEP--ISQ--SYLVE----LSILAPGGQDVIGEDMKAFAEQL 343 (858)
Q Consensus 284 ~vr~~~~~~-------~----~t~I~v~TpGrLl~-~~~~~--~L~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l 343 (858)
..+..+... . ..+|+|+|||||.| +.+.+ .|+ +|.|| |+++ +-| .+++..+...+
T Consensus 249 ~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll~----qsf-Q~Wl~~v~~~~ 323 (620)
T KOG0350|consen 249 LSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLLD----QSF-QEWLDTVMSLC 323 (620)
T ss_pred cccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHHH----HHH-HHHHHHHHHHh
Confidence 333222211 1 24899999999999 55443 455 45555 6666 222 12222111110
Q ss_pred c------------------------------ccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC---eecc
Q psy2470 344 K------------------------------PLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVKG---HLYP 388 (858)
Q Consensus 344 ~------------------------------~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g---~~~~ 388 (858)
+ ....+.++-++||||+ +..++.++-.. .|.+..+.+ ..|.
T Consensus 324 ~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~----~Prl~~v~~~~~~rys 399 (620)
T KOG0350|consen 324 KTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLH----IPRLFHVSKPLIGRYS 399 (620)
T ss_pred CCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcC----CCceEEeecccceeee
Confidence 0 0113345678899999 78888876553 344554442 1122
Q ss_pred e----eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHH-HhccCCCCcceEEEeccCCCCHHH
Q psy2470 389 V----SVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILK-QYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 389 v----~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~-~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
+ ...+..... .-+.-.+..++......++|+|+++.+.+.+++..|+ ... ..++.+..+.|+++++.
T Consensus 400 lp~~l~~~~vv~~~----~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~----~~~~~~s~~t~~l~~k~ 471 (620)
T KOG0350|consen 400 LPSSLSHRLVVTEP----KFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFC----SDNFKVSEFTGQLNGKR 471 (620)
T ss_pred cChhhhhceeeccc----ccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhc----cccchhhhhhhhhhHHH
Confidence 1 111111100 0122234444455557789999999999999999998 442 23677777999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.+.++.|..|.++||||||+.+||||+.+|+.||| || .|.+..+|+||+|||||+|. |.|
T Consensus 472 r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN--------Yd----------~P~~~ktyVHR~GRTARAgq~G~a 533 (620)
T KOG0350|consen 472 RYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN--------YD----------PPASDKTYVHRAGRTARAGQDGYA 533 (620)
T ss_pred HHHHHHHHhcCCceEEEehhhhhcCCcccccceEee--------cC----------CCchhhHHHHhhcccccccCCceE
Confidence 999999999999999999999999999999999999 88 78899999999999999998 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
|+|.
T Consensus 534 ~tll 537 (620)
T KOG0350|consen 534 ITLL 537 (620)
T ss_pred EEee
Confidence 9998
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-30 Score=320.55 Aligned_cols=137 Identities=31% Similarity=0.477 Sum_probs=128.2
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCC---Cc
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNG---NL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~---~l 117 (858)
+|+||||||+++|+.+++++.|||+|+||+++||+||+||++|+.+|+|+|||+.+++.+|++.|+.|||+|++| +|
T Consensus 394 ~G~cyRLyte~~~~~~~~~~~PEIlR~~L~~viL~l~~lg~~di~~f~fldpP~~~~i~~A~~~L~~LGAld~~~~~~~L 473 (1283)
T TIGR01967 394 PGICIRLYSEEDFNSRPEFTDPEILRTNLASVILQMLALRLGDIAAFPFIEAPDPRAIRDGFRLLEELGALDDDEAEPQL 473 (1283)
T ss_pred CceEEEecCHHHHHhhhhccCcccccccHHHHHHHHHhcCCCCcccccCCCCCCHHHHHHHHHHHHHCCCCCCCCCCccc
Confidence 899999999999999999999999999999999999999999999999999999999999999999999999999 79
Q ss_pred chHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 118 TKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 118 t~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
| ++|+.||+||+||++|+||+.+..+. .++++++|.+|.+..+.++..+..|.+.+.+|.
T Consensus 474 T-~lGr~ma~LPldPrlarmLl~a~~~gcl~e~l~IaA~Ls~~dp~~~p~~~~~~a~~~~~~f~~~~sD~l 543 (1283)
T TIGR01967 474 T-PIGRQLAQLPVDPRLARMLLEAHRLGCLQEVLIIASALSIQDPRERPMEKQQAADQAHARFKDPRSDFL 543 (1283)
T ss_pred c-HHHHHHhhcCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcCCCcchhHHHHHHHHHHhcCCCCCHH
Confidence 9 89999999999999999999987765 345778899999999999999999988777664
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-29 Score=290.49 Aligned_cols=279 Identities=16% Similarity=0.148 Sum_probs=182.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++++|||||| ++|++|.+.. ...+||++|+|+|+.|...++. .+|...... .|..
T Consensus 30 lv~apTGsGKT-----l~y~lp~l~~---------------~~~~lVi~P~~~L~~dq~~~l~-~~gi~~~~l---~~~~ 85 (470)
T TIGR00614 30 FVVMPTGGGKS-----LCYQLPALCS---------------DGITLVISPLISLMEDQVLQLK-ASGIPATFL---NSSQ 85 (470)
T ss_pred EEEcCCCCcHh-----HHHHHHHHHc---------------CCcEEEEecHHHHHHHHHHHHH-HcCCcEEEE---eCCC
Confidence 35799999999 6666775431 0147999999999988877763 455543322 1111
Q ss_pred Eec------cceeecceeEEEeecCcccc-C--CCcc-CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 285 FRK------GRMKILVSKIFKMSQGKPSD-S--GVEP-ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~------~~~~~~~t~I~v~TpGrLl~-~--~~~~-~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
... ........+|+|+||+++.. . .... ...++..+ +..+ -|.||...+.+ +. .++ ...
T Consensus 86 ~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~--~g~~fr~~~~~-l~-~l~-~~~ 160 (470)
T TIGR00614 86 SKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQ--WGHDFRPDYKA-LG-SLK-QKF 160 (470)
T ss_pred CHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCc--cccccHHHHHH-HH-HHH-HHc
Confidence 100 01122347899999999865 2 1111 23344443 3333 11233332221 11 111 223
Q ss_pred CCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCcc-chHHHHHHHHHHHHh-hCCCCCEEE
Q psy2470 349 TQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVV-NYVQGVVDTAIKIHE-SMPVGDILA 423 (858)
Q Consensus 349 ~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~-~~~~~~~~~l~~i~~-~~~~g~iLV 423 (858)
++.++++||||++.. .+.+.+.. ..+.+...+-..|. .+|...... +. ...+...+. ..+...+||
T Consensus 161 ~~~~~l~lTAT~~~~~~~di~~~l~l----~~~~~~~~s~~r~n-l~~~v~~~~~~~----~~~l~~~l~~~~~~~~~II 231 (470)
T TIGR00614 161 PNVPIMALTATASPSVREDILRQLNL----KNPQIFCTSFDRPN-LYYEVRRKTPKI----LEDLLRFIRKEFKGKSGII 231 (470)
T ss_pred CCCceEEEecCCCHHHHHHHHHHcCC----CCCcEEeCCCCCCC-cEEEEEeCCccH----HHHHHHHHHHhcCCCceEE
Confidence 678999999999543 34444432 22333222211111 122211111 22 222333333 333445699
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCc
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFV 503 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~ 503 (858)
||+++++++.+++.|++. ++.+.++||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 232 F~~s~~~~e~la~~L~~~-------g~~~~~~H~~l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~---- 300 (470)
T TIGR00614 232 YCPSRKKSEQVTASLQNL-------GIAAGAYHAGLEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIH---- 300 (470)
T ss_pred EECcHHHHHHHHHHHHhc-------CCCeeEeeCCCCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEE----
Confidence 999999999999999977 889999999999999999999999999999999999999999999999999
Q ss_pred cceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 504 KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 504 k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|-|.++|.||+|||||.|. |.|+.+|
T Consensus 301 ----~~----------~P~s~~~y~Qr~GRaGR~G~~~~~~~~~ 330 (470)
T TIGR00614 301 ----YS----------LPKSMESYYQESGRAGRDGLPSECHLFY 330 (470)
T ss_pred ----eC----------CCCCHHHHHhhhcCcCCCCCCceEEEEe
Confidence 66 67789999999999999996 9999999
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-30 Score=317.03 Aligned_cols=137 Identities=31% Similarity=0.471 Sum_probs=128.9
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccC-----C
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVN-----G 115 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~-----~ 115 (858)
+|+||||||+++|+.+++++.|||+|+||+++||+||+||++|+..|+|+|||+.+++.+|++.|+.+||+|.+ +
T Consensus 401 ~G~c~rLyte~d~~~~~~~~~PEIlR~~L~~viL~lk~lgl~di~~F~fldpP~~~~i~~al~~L~~LgAld~~~~~~~~ 480 (1294)
T PRK11131 401 EGICIRLYSEDDFLSRPEFTDPEILRTNLASVILQMTALGLGDIAAFPFVEAPDKRNIQDGVRLLEELGAITTDEQASAY 480 (1294)
T ss_pred CcEEEEeCCHHHHHhhhcccCCccccCCHHHHHHHHHHcCCCCcceeeCCCCCCHHHHHHHHHHHHHCCCCCccccCCCc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999864 5
Q ss_pred CcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccccchh
Q psy2470 116 NLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS 178 (858)
Q Consensus 116 ~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~ 178 (858)
+|| ++|++||+||+||++||||+.+..+. +++++++|.||.++.+.++..+..|.+.+.+|.
T Consensus 481 ~LT-~lG~~la~LPldPrlakmLl~a~~~~c~~evl~IaA~Lsv~dpf~~p~~~~~~a~~~~~~f~~~~sD~l 552 (1294)
T PRK11131 481 KLT-PLGRQLAQLPVDPRLARMVLEAQKHGCVREVMIITSALSIQDPRERPMDKQQASDEKHRRFADKESDFL 552 (1294)
T ss_pred cCc-HHHHHHHhCCCChHHHHHHHHhhhcCCHHHHHHHHHHHcCCCcccCCchhHHHHHHHHHhhCCCCCCHH
Confidence 799 79999999999999999999988775 456889999999999999999999998888775
|
|
| >KOG0337|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=266.30 Aligned_cols=314 Identities=15% Similarity=0.120 Sum_probs=218.1
Q ss_pred hhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccccc
Q psy2470 156 LRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYI 235 (858)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l 235 (858)
++.+......-|.+.|+..+.-.|.+... ++ +|.|||||| +||.+|++......
T Consensus 33 ~raI~kkg~~~ptpiqRKTipliLe~~dv--v~------------------martgsgkt-----aaf~ipm~e~Lk~~- 86 (529)
T KOG0337|consen 33 LRAIHKKGFNTPTPIQRKTIPLILEGRDV--VG------------------MARTGSGKT-----AAFLIPMIEKLKSH- 86 (529)
T ss_pred HHHHHHhhcCCCCchhcccccceeecccc--ce------------------eeecCCcch-----hhHHHHHHHHHhhc-
Confidence 34455555555888999988888877433 21 489999999 99999977643221
Q ss_pred CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEee-eeeEEEeccceee---cceeEEEeecCccccCC--
Q psy2470 236 GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYI-SRGYMFRKGRMKI---LVSKIFKMSQGKPSDSG-- 309 (858)
Q Consensus 236 ~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~-~vG~~vr~~~~~~---~~t~I~v~TpGrLl~~~-- 309 (858)
. .+..++++++|||+||.|+.+-+ +++|..++.... .+| +...+.+.. .+++|++|||||++.+.
T Consensus 87 ------s-~~g~RalilsptreLa~qtlkvv-kdlgrgt~lr~s~~~g-gD~~eeqf~~l~~npDii~ATpgr~~h~~ve 157 (529)
T KOG0337|consen 87 ------S-QTGLRALILSPTRELALQTLKVV-KDLGRGTKLRQSLLVG-GDSIEEQFILLNENPDIIIATPGRLLHLGVE 157 (529)
T ss_pred ------c-ccccceeeccCcHHHHHHHHHHH-HHhccccchhhhhhcc-cchHHHHHHHhccCCCEEEecCceeeeeehh
Confidence 1 23346899999999999996644 777765555511 123 223333322 56999999999999932
Q ss_pred CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEE
Q psy2470 310 VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILS 381 (858)
Q Consensus 310 ~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~ 381 (858)
-+..|+.+.+| |.+. +||..++.+++ .+.+.++|+++||||+. .-.|++-=. .+|..+.
T Consensus 158 m~l~l~sveyVVfdEadrlfe--------mgfqeql~e~l-~rl~~~~QTllfSatlp~~lv~fakaGl----~~p~lVR 224 (529)
T KOG0337|consen 158 MTLTLSSVEYVVFDEADRLFE--------MGFQEQLHEIL-SRLPESRQTLLFSATLPRDLVDFAKAGL----VPPVLVR 224 (529)
T ss_pred eeccccceeeeeehhhhHHHh--------hhhHHHHHHHH-HhCCCcceEEEEeccCchhhHHHHHccC----CCCceEE
Confidence 23566777666 7777 44444444322 26788899999999994 224444211 1233343
Q ss_pred ec--Cee-cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 382 VK--GHL-YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 382 v~--g~~-~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
++ .+. ...++.+..... +.+...++.++... .+.+.+||++|+..++.+.+.|+.. |+.+.-+||
T Consensus 225 ldvetkise~lk~~f~~~~~----a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~-------g~~~s~iys 293 (529)
T KOG0337|consen 225 LDVETKISELLKVRFFRVRK----AEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDF-------GGEGSDIYS 293 (529)
T ss_pred eehhhhcchhhhhheeeecc----HHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhc-------CCCcccccc
Confidence 32 221 112222222221 23444455555432 2357999999999999999999977 888889999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
.|.|..|..-+..|+.++..++|.||+|+||+|||..+-||| || .|.+..-+.||+||+.|+
T Consensus 294 slD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvin--------yd----------~p~~~klFvhRVgr~ara 355 (529)
T KOG0337|consen 294 SLDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVIN--------YD----------FPPDDKLFVHRVGRVARA 355 (529)
T ss_pred ccChHhhhhccccccCCccceEEEehhhhccCCCcccccccc--------cc----------CCCCCceEEEEecchhhc
Confidence 999999999999999999999999999999999999999999 55 444445556899999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|+ |.+|.+.
T Consensus 356 grtg~aYs~V 365 (529)
T KOG0337|consen 356 GRTGRAYSLV 365 (529)
T ss_pred cccceEEEEE
Confidence 96 9999988
|
|
| >TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-28 Score=289.89 Aligned_cols=284 Identities=11% Similarity=0.032 Sum_probs=168.3
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEE-ccchHHHHHHHHHHHH---HHhC-----------
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIV-RSSIDVACSCTVVEFL---TEMG----------- 271 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LV-l~PtR~la~qva~~v~---~e~g----------- 271 (858)
.||||||||.++ .+|.+|.. . +....+.|| ++||||+|.|+++.+. +.+.
T Consensus 37 ~apTGSGKTaa~--aafll~~~-----------~--~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~~~~~~~~~~~ 101 (844)
T TIGR02621 37 STPTGLGKTSII--AAWLLAVE-----------I--GAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPDVPEVEAALWA 101 (844)
T ss_pred ecCCCCcccHHH--HHhhcccc-----------c--cccccceEEEeCchHHHHHHHHHHHHHHHHHhcccchhhhhhhh
Confidence 489999999333 14444321 1 122234566 6699999999977553 3221
Q ss_pred ------------CcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC------c-------cCCCcccEEEecCC
Q psy2470 272 ------------CRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV------E-------PISQSYLVELSILA 325 (858)
Q Consensus 272 ------------~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~------~-------~~L~~~~vlR~l~~ 325 (858)
+++...+||+.+.-... ....+++|+|+|+-.+.. .+. . ..|++.+++ -.
T Consensus 102 ~~~~~~~~~~~~l~v~~l~GG~~~~~q~~-~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~~v~~L---VL 177 (844)
T TIGR02621 102 LCSTRPEKKDRPLAISTLRGQFADNDEWM-LDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLGQDALI---VH 177 (844)
T ss_pred hhccccccccCCeEEEEEECCCChHHHHH-hcCCCCcEEEECHHHHcCCccccccccccccccchhhhhccceEE---EE
Confidence 22222333333221111 122468999999633322 110 0 013444443 00
Q ss_pred CCCchhhhhHHHHHHHHhccc-CCC---CceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCeecc---eeEEEecC
Q psy2470 326 PGGQDVIGEDMKAFAEQLKPL-KRT---QLKLIISSATVD--AEEICQFYNISASSNATILSVKGHLYP---VSVYYSND 396 (858)
Q Consensus 326 ~~~~d~ll~~lk~~~~~l~~~-~~~---~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~~~---v~~~~~~~ 396 (858)
|| .|..++|...+.+++... .++ ++|+++||||++ ...+...+.. ++..+.+..+... +.+++ ..
T Consensus 178 DE-ADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~----~p~~i~V~~~~l~a~ki~q~v-~v 251 (844)
T TIGR02621 178 DE-AHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSA----EDYKHPVLKKRLAAKKIVKLV-PP 251 (844)
T ss_pred eh-hhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHcc----CCceeecccccccccceEEEE-ec
Confidence 11 113355555555444321 122 379999999994 4556555552 3333344322211 22222 22
Q ss_pred CccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH-----HhcCCC
Q psy2470 397 PVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI-----KVFRPT 471 (858)
Q Consensus 397 ~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~-----~v~~~f 471 (858)
....+....+..+..+.. +..+++||||||+++++.+++.|++. ++ ..|||+|+|.+|. ++++.|
T Consensus 252 ~~e~Kl~~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~-------g~--~lLHG~m~q~dR~~~~~~~il~~F 321 (844)
T TIGR02621 252 SDEKFLSTMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKE-------KF--ELLTGTLRGAERDDLVKKEIFNRF 321 (844)
T ss_pred ChHHHHHHHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhc-------CC--eEeeCCCCHHHHhhHHHHHHHHHH
Confidence 222222233333333332 44688999999999999999999865 54 8899999999999 788888
Q ss_pred CC----Cc-------EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-
Q psy2470 472 PR----AM-------RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS- 539 (858)
Q Consensus 472 ~~----g~-------~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~- 539 (858)
++ |. .+|||||||+||||||+. ++||+ |+ .| .++|+||+||+||.|.
T Consensus 322 k~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~--------d~----------aP--~esyIQRiGRtgR~G~~ 380 (844)
T TIGR02621 322 LPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVC--------DL----------AP--FESMQQRFGRVNRFGEL 380 (844)
T ss_pred hccccccccccccccceEEeccchhhhcccCCc-ceEEE--------CC----------CC--HHHHHHHhcccCCCCCC
Confidence 76 44 789999999999999987 88888 43 23 4899999999999987
Q ss_pred -ceEEEeh
Q psy2470 540 -GHVYRKN 546 (858)
Q Consensus 540 -G~~~rL~ 546 (858)
|..+.++
T Consensus 381 ~~~~i~vv 388 (844)
T TIGR02621 381 QACQIAVV 388 (844)
T ss_pred CCceEEEE
Confidence 3334444
|
This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs. |
| >KOG0344|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-29 Score=277.68 Aligned_cols=326 Identities=14% Similarity=0.105 Sum_probs=226.3
Q ss_pred hhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccccc
Q psy2470 156 LRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYI 235 (858)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l 235 (858)
+..+.++.+..|...|...+.+-+.. ++.++ .|+|||||| +||.+|.+..... .
T Consensus 148 l~nl~~~~F~~Pt~iq~~aipvfl~~--r~~lA------------------capTGsgKt-----laf~~Pil~~L~~-~ 201 (593)
T KOG0344|consen 148 LENLQELGFDEPTPIQKQAIPVFLEK--RDVLA------------------CAPTGSGKT-----LAFNLPILQHLKD-L 201 (593)
T ss_pred HHhHhhCCCCCCCcccchhhhhhhcc--cceEE------------------eccCCCcch-----hhhhhHHHHHHHH-h
Confidence 55666677778988888887777766 33332 499999999 8888985443222 2
Q ss_pred CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC--CcCccEeeeeeEEE----eccceeecceeEEEeecCcccc-C
Q psy2470 236 GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG--CRMDFEYISRGYMF----RKGRMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 236 ~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g--~~~g~~~~~vG~~v----r~~~~~~~~t~I~v~TpGrLl~-~ 308 (858)
.+ + .++..-+++|+.|||+||.|++.++.+. . ...+.......|.. ..........+|++.||-|+.. +
T Consensus 202 ~~-~--~~~~gl~a~Il~ptreLa~Qi~re~~k~-~~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~ 277 (593)
T KOG0344|consen 202 SQ-E--KHKVGLRALILSPTRELAAQIYREMRKY-SIDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLL 277 (593)
T ss_pred hc-c--cCccceEEEEecchHHHHHHHHHHHHhc-CCCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHh
Confidence 22 2 2344457899999999999998877433 3 22222200011111 0111111346899999999998 4
Q ss_pred CCcc---CCCcccEEEecCCCCCchhh---hhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEE
Q psy2470 309 GVEP---ISQSYLVELSILAPGGQDVI---GEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATIL 380 (858)
Q Consensus 309 ~~~~---~L~~~~vlR~l~~~~~~d~l---l~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i 380 (858)
...+ .+.++.++-+.+ .|.+ ..|.+++..++.....++.++-+||||+ .++++++.... +...+
T Consensus 278 ~~~~~~idl~~V~~lV~dE----aD~lfe~~~f~~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~~~i~~----~~~~v 349 (593)
T KOG0344|consen 278 GLGKLNIDLSKVEWLVVDE----ADLLFEPEFFVEQLADIYSACQSPDIRVALFSATISVYVEEWAELIKS----DLKRV 349 (593)
T ss_pred cCCCccchhheeeeEeech----HHhhhChhhHHHHHHHHHHHhcCcchhhhhhhccccHHHHHHHHHhhc----cceeE
Confidence 4443 566666662223 3322 2455666555555667889999999999 56777765552 23333
Q ss_pred EecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC
Q psy2470 381 SVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG 457 (858)
Q Consensus 381 ~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg 457 (858)
.|.-+. ..|++........ ..+.-.+.++....-..++|||+-+.+.+..|...|... +++.+..+||
T Consensus 350 ivg~~~sa~~~V~QelvF~gse---~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L~~~------~~i~v~vIh~ 420 (593)
T KOG0344|consen 350 IVGLRNSANETVDQELVFCGSE---KGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEELEIY------DNINVDVIHG 420 (593)
T ss_pred EEecchhHhhhhhhhheeeecc---hhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHhhhc------cCcceeeEec
Confidence 333221 1333322222111 223444555555555678999999999999999999632 3888999999
Q ss_pred CCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 458 SLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 458 ~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
..+|.+|..++++|+.|+++|++|||+.+||+|+.||+.||| || .|-+.-+|+||+||+||+
T Consensus 421 e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VIn--------yD----------~p~s~~syihrIGRtgRa 482 (593)
T KOG0344|consen 421 ERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVIN--------YD----------FPQSDLSYIHRIGRTGRA 482 (593)
T ss_pred ccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEe--------cC----------CCchhHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999999999 88 888999999999999999
Q ss_pred CC-ceEEEeh
Q psy2470 538 RS-GHVYRKN 546 (858)
Q Consensus 538 g~-G~~~rL~ 546 (858)
|+ |.+|.+|
T Consensus 483 g~~g~Aitfy 492 (593)
T KOG0344|consen 483 GRSGKAITFY 492 (593)
T ss_pred CCCcceEEEe
Confidence 98 9999999
|
|
| >PRK13767 ATP-dependent helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-28 Score=297.06 Aligned_cols=305 Identities=16% Similarity=0.094 Sum_probs=190.0
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH----------HHhCCcC
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL----------TEMGCRM 274 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~----------~e~g~~~ 274 (858)
-+.|+|||||| .|+.+|.+..... ....+.-....++|+++|||+||.|+.+++. +.+|..+
T Consensus 51 li~APTGSGKT-----laa~Lpil~~l~~---~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~ 122 (876)
T PRK13767 51 LISSPTGSGKT-----LAAFLAIIDELFR---LGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEEL 122 (876)
T ss_pred EEECCCCCcHH-----HHHHHHHHHHHHh---hccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 35799999999 6666664432211 1111111233568999999999999876543 2234443
Q ss_pred -ccEeeeeeEEEeccc------eeecceeEEEeecCccccCCCcc----CCCcccEE------EecCCCCCchhhhhHHH
Q psy2470 275 -DFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSDSGVEP----ISQSYLVE------LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 275 -g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~~~~~~----~L~~~~vl------R~l~~~~~~d~ll~~lk 337 (858)
+.. ++...+... .....++|+|+||++|..++.++ .+.++.+| .+++..-|. .+...+.
T Consensus 123 ~~i~---v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~~RG~-~l~~~L~ 198 (876)
T PRK13767 123 PEIR---VAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAENKRGV-HLSLSLE 198 (876)
T ss_pred CCee---EEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccCccHH-HHHHHHH
Confidence 222 332211111 11235799999999997733333 34555555 333300011 1122233
Q ss_pred HHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccC--CCCcEEEecCe---ecceeEEEec-----CCccchHHHHH
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISAS--SNATILSVKGH---LYPVSVYYSN-----DPVVNYVQGVV 406 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~--~~~~~i~v~g~---~~~v~~~~~~-----~~~~~~~~~~~ 406 (858)
.+. ...+++.|.+++|||+ +.+.+++|+..... ...++..+... ...+...... ...........
T Consensus 199 rL~----~l~~~~~q~IglSATl~~~~~va~~L~~~~~~~~~r~~~iv~~~~~k~~~i~v~~p~~~l~~~~~~~~~~~l~ 274 (876)
T PRK13767 199 RLE----ELAGGEFVRIGLSATIEPLEEVAKFLVGYEDDGEPRDCEIVDARFVKPFDIKVISPVDDLIHTPAEEISEALY 274 (876)
T ss_pred HHH----HhcCCCCeEEEEecccCCHHHHHHHhcCccccCCCCceEEEccCCCccceEEEeccCccccccccchhHHHHH
Confidence 333 1234678999999999 77888888763210 01122222221 1122211110 00111112333
Q ss_pred HHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc
Q psy2470 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 407 ~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe 486 (858)
..+..+... .+++||||||++.++.++..|++.... ...+..+..+||+|++++|..+++.|++|..+|||||+++|
T Consensus 275 ~~L~~~i~~--~~~~LVF~nTr~~ae~la~~L~~~~~~-~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~i~vLVaTs~Le 351 (876)
T PRK13767 275 ETLHELIKE--HRTTLIFTNTRSGAERVLYNLRKRFPE-EYDEDNIGAHHSSLSREVRLEVEEKLKRGELKVVVSSTSLE 351 (876)
T ss_pred HHHHHHHhc--CCCEEEEeCCHHHHHHHHHHHHHhchh-hccccceeeeeCCCCHHHHHHHHHHHHcCCCeEEEECChHH
Confidence 444444432 578999999999999999999863210 01246789999999999999999999999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~ 546 (858)
+|||||+|++||+ |+ .|.|.++|.||+|||||.+ .|.+|...
T Consensus 352 ~GIDip~Vd~VI~--------~~----------~P~sv~~ylQRiGRaGR~~g~~~~g~ii~~~ 397 (876)
T PRK13767 352 LGIDIGYIDLVVL--------LG----------SPKSVSRLLQRIGRAGHRLGEVSKGRIIVVD 397 (876)
T ss_pred hcCCCCCCcEEEE--------eC----------CCCCHHHHHHhcccCCCCCCCCCcEEEEEcC
Confidence 9999999999999 65 5788999999999999863 37877654
|
|
| >PRK11057 ATP-dependent DNA helicase RecQ; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=5e-28 Score=288.02 Aligned_cols=281 Identities=16% Similarity=0.137 Sum_probs=187.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++++|||||| ++|++|.+.. . ..+||++|+++|+.|....+. ..|...... .+...
T Consensus 45 v~apTGsGKT-----l~y~lpal~~---------~------g~tlVisPl~sL~~dqv~~l~-~~gi~~~~~---~s~~~ 100 (607)
T PRK11057 45 VVMPTGGGKS-----LCYQIPALVL---------D------GLTLVVSPLISLMKDQVDQLL-ANGVAAACL---NSTQT 100 (607)
T ss_pred EEcCCCchHH-----HHHHHHHHHc---------C------CCEEEEecHHHHHHHHHHHHH-HcCCcEEEE---cCCCC
Confidence 4699999999 5566665431 1 147999999999988877764 455443322 11111
Q ss_pred ec------cceeecceeEEEeecCcccc--CCCccCCCcccEE------EecCCCCCchhhhhH--HHHHHHHhcccCCC
Q psy2470 286 RK------GRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~------~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~l~~~~~~ 349 (858)
+. ........+|+|+||++|+. +.......++.++ ...+ -|.||...+ +..+. ...+
T Consensus 101 ~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~--~G~~fr~~y~~L~~l~-----~~~p 173 (607)
T PRK11057 101 REQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQ--WGHDFRPEYAALGQLR-----QRFP 173 (607)
T ss_pred HHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCcccccc--ccCcccHHHHHHHHHH-----HhCC
Confidence 10 11122346899999999985 2222222234443 3222 112333222 22222 2236
Q ss_pred CceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+.+++++|||.+.. .+.+.+.. ..|.+.+.....|. ..|....... ....+..++.....+++||||+
T Consensus 174 ~~~~v~lTAT~~~~~~~di~~~l~l----~~~~~~~~~~~r~n-l~~~v~~~~~----~~~~l~~~l~~~~~~~~IIFc~ 244 (607)
T PRK11057 174 TLPFMALTATADDTTRQDIVRLLGL----NDPLIQISSFDRPN-IRYTLVEKFK----PLDQLMRYVQEQRGKSGIIYCN 244 (607)
T ss_pred CCcEEEEecCCChhHHHHHHHHhCC----CCeEEEECCCCCCc-ceeeeeeccc----hHHHHHHHHHhcCCCCEEEEEC
Confidence 78999999999543 23344331 23444443322221 1222111111 1223444444555678999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
|+++++.+++.|++. ++.+.++||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 245 tr~~~e~la~~L~~~-------g~~v~~~Ha~l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~------- 310 (607)
T PRK11057 245 SRAKVEDTAARLQSR-------GISAAAYHAGLDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (607)
T ss_pred cHHHHHHHHHHHHhC-------CCCEEEecCCCCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEE-------
Confidence 999999999999977 889999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNR 551 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~ 551 (858)
|| .|.|.++|.||+|||||.|. |.|+.+| .++..
T Consensus 311 -~d----------~P~s~~~y~Qr~GRaGR~G~~~~~ill~~~~d~~~ 347 (607)
T PRK11057 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFYDPADMAW 347 (607)
T ss_pred -eC----------CCCCHHHHHHHhhhccCCCCCceEEEEeCHHHHHH
Confidence 66 67889999999999999997 9999999 55433
|
|
| >PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-28 Score=293.03 Aligned_cols=286 Identities=16% Similarity=0.117 Sum_probs=182.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHH-HHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACS-CTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~-qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
++++||+||| ++|++|.+.. . ..+||++|+++|+. |+.. +. ..|.......++..+.
T Consensus 480 VimPTGSGKS-----LcYQLPAL~~---------~------GiTLVISPLiSLmqDQV~~-L~-~~GI~Aa~L~s~~s~~ 537 (1195)
T PLN03137 480 VLMPTGGGKS-----LTYQLPALIC---------P------GITLVISPLVSLIQDQIMN-LL-QANIPAASLSAGMEWA 537 (1195)
T ss_pred EEcCCCccHH-----HHHHHHHHHc---------C------CcEEEEeCHHHHHHHHHHH-HH-hCCCeEEEEECCCCHH
Confidence 4579999999 7777775541 1 14799999999987 4433 32 2444433331111110
Q ss_pred Eecc---cee--ecceeEEEeecCcccc---CCCcc-CC---C--cccEE----EecCCCCCchhhhhHHHHHHHHhccc
Q psy2470 285 FRKG---RMK--ILVSKIFKMSQGKPSD---SGVEP-IS---Q--SYLVE----LSILAPGGQDVIGEDMKAFAEQLKPL 346 (858)
Q Consensus 285 vr~~---~~~--~~~t~I~v~TpGrLl~---~~~~~-~L---~--~~~vl----R~l~~~~~~d~ll~~lk~~~~~l~~~ 346 (858)
-+.. ... ....+|+|+||++|.. +.... .+ . .+-|| .+.+ -|.||-..+.+ +. .++ .
T Consensus 538 eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSq--WGhDFRpdYr~-L~-~Lr-~ 612 (1195)
T PLN03137 538 EQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQ--WGHDFRPDYQG-LG-ILK-Q 612 (1195)
T ss_pred HHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhh--cccchHHHHHH-HH-HHH-H
Confidence 0000 001 1347999999999863 11111 11 1 22233 3333 11234332221 11 111 2
Q ss_pred CCCCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhh-CCCCCEE
Q psy2470 347 KRTQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHES-MPVGDIL 422 (858)
Q Consensus 347 ~~~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~g~iL 422 (858)
.-++.++++||||+... .+.+.+.. ..+++...+...| ..+|...+... .....+..++.. ...+..|
T Consensus 613 ~fp~vPilALTATAT~~V~eDI~~~L~l----~~~~vfr~Sf~Rp-NL~y~Vv~k~k---k~le~L~~~I~~~~~~esgI 684 (1195)
T PLN03137 613 KFPNIPVLALTATATASVKEDVVQALGL----VNCVVFRQSFNRP-NLWYSVVPKTK---KCLEDIDKFIKENHFDECGI 684 (1195)
T ss_pred hCCCCCeEEEEecCCHHHHHHHHHHcCC----CCcEEeecccCcc-ceEEEEeccch---hHHHHHHHHHHhcccCCCce
Confidence 23567899999999432 35555542 2233333222112 23333222111 112233333332 2356789
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
|||+++.+++.+++.|++. |+.+.++||+|++++|..+++.|.+|+.+|||||+++++|||+|+|++||+
T Consensus 685 IYC~SRke~E~LAe~L~~~-------Gika~~YHAGLs~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIH--- 754 (1195)
T PLN03137 685 IYCLSRMDCEKVAERLQEF-------GHKAAFYHGSMDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIH--- 754 (1195)
T ss_pred eEeCchhHHHHHHHHHHHC-------CCCeeeeeCCCCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEE---
Confidence 9999999999999999977 899999999999999999999999999999999999999999999999999
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNR 551 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~ 551 (858)
|+ .|.|.++|.||+|||||.|. |.|+.+| .++..
T Consensus 755 -----yd----------lPkSiEsYyQriGRAGRDG~~g~cILlys~~D~~~ 791 (1195)
T PLN03137 755 -----HS----------LPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIR 791 (1195)
T ss_pred -----cC----------CCCCHHHHHhhhcccCCCCCCceEEEEecHHHHHH
Confidence 66 78889999999999999996 9999999 45543
|
|
| >PRK09751 putative ATP-dependent helicase Lhr; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.1e-28 Score=301.31 Aligned_cols=296 Identities=16% Similarity=0.106 Sum_probs=185.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCC---CC-CCccCEEEccchHHHHHHHHHHHHH---H-------hC
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG---VG-DKARPTIVRSSIDVACSCTVVEFLT---E-------MG 271 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g---~g-~~~~~~LVl~PtR~la~qva~~v~~---e-------~g 271 (858)
++|+|||||| .|+.+|.+...+. +...+ .+ ....++|+++|+++|+.|+.+++.. + +|
T Consensus 1 V~APTGSGKT-----LAA~LpaL~~Ll~---~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g 72 (1490)
T PRK09751 1 VIAPTGSGKT-----LAAFLYALDRLFR---EGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRG 72 (1490)
T ss_pred CcCCCCcHHH-----HHHHHHHHHHHHh---cccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 4799999999 7777775543221 11100 01 1235689999999999999877632 1 11
Q ss_pred C-cCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhH
Q psy2470 272 C-RMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGED 335 (858)
Q Consensus 272 ~-~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~ 335 (858)
. ..+.. |+...+... ...+.++|+|+||++|.. +.+. ..++++.+| .+++..-|..+.+.
T Consensus 73 ~~~~~i~---V~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~- 148 (1490)
T PRK09751 73 ETEVNLR---VGIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALS- 148 (1490)
T ss_pred cccCceE---EEEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHH-
Confidence 1 22333 442222111 112357999999999987 3322 246666655 44440011222222
Q ss_pred HHHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEe-cC--eecceeEEEecCCccch----------
Q psy2470 336 MKAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSV-KG--HLYPVSVYYSNDPVVNY---------- 401 (858)
Q Consensus 336 lk~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v-~g--~~~~v~~~~~~~~~~~~---------- 401 (858)
+..+. ...+.+.|+|.+|||+ +.+.+++|+.. +.++..+ +. +..+++++.......+.
T Consensus 149 LeRL~----~l~~~~~QrIgLSATI~n~eevA~~L~g----~~pv~Iv~~~~~r~~~l~v~vp~~d~~~~~~~~~~~~~~ 220 (1490)
T PRK09751 149 LERLD----ALLHTSAQRIGLSATVRSASDVAAFLGG----DRPVTVVNPPAMRHPQIRIVVPVANMDDVSSVASGTGED 220 (1490)
T ss_pred HHHHH----HhCCCCCeEEEEEeeCCCHHHHHHHhcC----CCCEEEECCCCCcccceEEEEecCchhhccccccccccc
Confidence 23333 1335678999999999 88899999873 2222222 11 12233322211100000
Q ss_pred -----HH----HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCC--------------------------C
Q psy2470 402 -----VQ----GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQR--------------------------E 446 (858)
Q Consensus 402 -----~~----~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~--------------------------~ 446 (858)
.. .....++..+. ..+++|||+||+..++.++..|++..... +
T Consensus 221 ~~~~r~~~i~~~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (1490)
T PRK09751 221 SHAGREGSIWPYIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQS 298 (1490)
T ss_pred cchhhhhhhhHHHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhcccc
Confidence 00 11111222222 35789999999999999999998542100 0
Q ss_pred CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhh
Q psy2470 447 DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKAS 526 (858)
Q Consensus 447 ~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~ 526 (858)
...+.+..+||+|++++|..+++.|++|+.++||||+.+|+||||++|++||+ |+ .|.|.++
T Consensus 299 ~~~~ia~~HHGsLSkeeR~~IE~~fK~G~LrvLVATssLELGIDIg~VDlVIq--------~g----------sP~sVas 360 (1490)
T PRK09751 299 SDVFIARSHHGSVSKEQRAITEQALKSGELRCVVATSSLELGIDMGAVDLVIQ--------VA----------TPLSVAS 360 (1490)
T ss_pred ccceeeeeccccCCHHHHHHHHHHHHhCCceEEEeCcHHHccCCcccCCEEEE--------eC----------CCCCHHH
Confidence 01234778999999999999999999999999999999999999999999999 55 6889999
Q ss_pred HHHhhcccCCCCCce
Q psy2470 527 AVQRAGRAGRVRSGH 541 (858)
Q Consensus 527 ~~qR~GRaGR~g~G~ 541 (858)
|.||+|||||...|.
T Consensus 361 ~LQRiGRAGR~~gg~ 375 (1490)
T PRK09751 361 GLQRIGRAGHQVGGV 375 (1490)
T ss_pred HHHHhCCCCCCCCCc
Confidence 999999999974443
|
|
| >PRK10689 transcription-repair coupling factor; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.7e-27 Score=292.22 Aligned_cols=282 Identities=13% Similarity=0.064 Sum_probs=184.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
|--.-+.|+||||||.+++++|+..- . ...+++|++||++||.|+++.+.+.++ ..+..
T Consensus 621 ~~d~Ll~a~TGsGKT~val~aa~~~~------------~-----~g~qvlvLvPT~eLA~Q~~~~f~~~~~-~~~v~--- 679 (1147)
T PRK10689 621 AMDRLVCGDVGFGKTEVAMRAAFLAV------------E-----NHKQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR--- 679 (1147)
T ss_pred CCCEEEEcCCCcCHHHHHHHHHHHHH------------H-----cCCeEEEEeCcHHHHHHHHHHHHHhhc-cCCce---
Confidence 33456789999999987777776431 1 123689999999999999998865443 22222
Q ss_pred eeEEEeccce----------eecceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 281 RGYMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 281 vG~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
++...++... ....++|+|+||+.+- .+..++++.++ -+| |...|-......+. ..+++
T Consensus 680 i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~---~~v~~~~L~lL-VID--EahrfG~~~~e~lk-----~l~~~ 748 (1147)
T PRK10689 680 IEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQ---SDVKWKDLGLL-IVD--EEHRFGVRHKERIK-----AMRAD 748 (1147)
T ss_pred EEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHh---CCCCHhhCCEE-EEe--chhhcchhHHHHHH-----hcCCC
Confidence 2222222111 1134799999997542 22234444443 001 11111122222222 45678
Q ss_pred ceEEEEecccCHH--HHHHHhhcccCCCCcEEEecCe-ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 351 LKLIISSATVDAE--EICQFYNISASSNATILSVKGH-LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 351 ~q~il~SAT~~~~--~~~~~~~~~~~~~~~~i~v~g~-~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
.|+++||||+... .++..... ++.++..+.. ..+++.++..... ...+...+..+. ..|+++||+|+
T Consensus 749 ~qvLl~SATpiprtl~l~~~gl~----d~~~I~~~p~~r~~v~~~~~~~~~---~~~k~~il~el~---r~gqv~vf~n~ 818 (1147)
T PRK10689 749 VDILTLTATPIPRTLNMAMSGMR----DLSIIATPPARRLAVKTFVREYDS---LVVREAILREIL---RGGQVYYLYND 818 (1147)
T ss_pred CcEEEEcCCCCHHHHHHHHhhCC----CcEEEecCCCCCCCceEEEEecCc---HHHHHHHHHHHh---cCCeEEEEECC
Confidence 9999999998443 33333322 4555554432 2456655443211 111112222222 25899999999
Q ss_pred HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee
Q psy2470 428 LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW 507 (858)
Q Consensus 428 ~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~ 507 (858)
.+.++.+++.|++. .+++.+..+||+|++++|.+++++|++|+.+|||||||+|||||||+|++||.
T Consensus 819 i~~ie~la~~L~~~-----~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi-------- 885 (1147)
T PRK10689 819 VENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII-------- 885 (1147)
T ss_pred HHHHHHHHHHHHHh-----CCCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEE--------
Confidence 99999999999965 24678999999999999999999999999999999999999999999999993
Q ss_pred ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 508 FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 508 yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+++.. -+-++|.||+||+||.|. |.||.++
T Consensus 886 ~~ad~---------fglaq~~Qr~GRvGR~g~~g~a~ll~ 916 (1147)
T PRK10689 886 ERADH---------FGLAQLHQLRGRVGRSHHQAYAWLLT 916 (1147)
T ss_pred ecCCC---------CCHHHHHHHhhccCCCCCceEEEEEe
Confidence 11110 012468999999999987 9999887
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-26 Score=282.50 Aligned_cols=282 Identities=16% Similarity=0.113 Sum_probs=185.4
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
..-+.|+||||||.+++++++..- .. | .++++++||++||.|.++.+.+.++ ..+.. ++
T Consensus 474 d~Ll~adTGsGKT~val~a~l~al------------~~--g---~qvlvLvPT~~LA~Q~~~~f~~~~~-~~~i~---v~ 532 (926)
T TIGR00580 474 DRLVCGDVGFGKTEVAMRAAFKAV------------LD--G---KQVAVLVPTTLLAQQHFETFKERFA-NFPVT---IE 532 (926)
T ss_pred CEEEECCCCccHHHHHHHHHHHHH------------Hh--C---CeEEEEeCcHHHHHHHHHHHHHHhc-cCCcE---EE
Confidence 345789999999966666554311 11 1 3689999999999999998865543 23333 32
Q ss_pred EEEeccc---e-------eecceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 283 YMFRKGR---M-------KILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 283 ~~vr~~~---~-------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
...++.. . ....++|+|+||. ++. .+..++++.++ -.||...|-....+.+. ..+++.|
T Consensus 533 ~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~-ll~--~~v~f~~L~ll---VIDEahrfgv~~~~~L~-----~~~~~~~ 601 (926)
T TIGR00580 533 LLSRFRSAKEQNEILKELASGKIDILIGTHK-LLQ--KDVKFKDLGLL---IIDEEQRFGVKQKEKLK-----ELRTSVD 601 (926)
T ss_pred EEeccccHHHHHHHHHHHHcCCceEEEchHH-Hhh--CCCCcccCCEE---EeecccccchhHHHHHH-----hcCCCCC
Confidence 2222211 0 1124799999994 432 33344544444 00011111122233333 3456789
Q ss_pred EEEEecccCHHHHHHHhhcccCCCCcEEEec-CeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH
Q psy2470 353 LIISSATVDAEEICQFYNISASSNATILSVK-GHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQI 431 (858)
Q Consensus 353 ~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~-g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i 431 (858)
+++||||+....+...+.. ..++.++..+ ....|++.++..... ......+...+. ..++++||+|+.+++
T Consensus 602 vL~~SATpiprtl~~~l~g--~~d~s~I~~~p~~R~~V~t~v~~~~~----~~i~~~i~~el~--~g~qv~if~n~i~~~ 673 (926)
T TIGR00580 602 VLTLSATPIPRTLHMSMSG--IRDLSIIATPPEDRLPVRTFVMEYDP----ELVREAIRRELL--RGGQVFYVHNRIESI 673 (926)
T ss_pred EEEEecCCCHHHHHHHHhc--CCCcEEEecCCCCccceEEEEEecCH----HHHHHHHHHHHH--cCCeEEEEECCcHHH
Confidence 9999999865554432211 0134444433 223567766553221 111222222222 368999999999999
Q ss_pred HHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 432 EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 432 ~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
+.+++.|++. .+++.+..+||+|++++|.+++++|++|+.+|||||+|+|+|||||+|++||+ |++.
T Consensus 674 e~l~~~L~~~-----~p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi--------~~a~ 740 (926)
T TIGR00580 674 EKLATQLREL-----VPEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIII--------ERAD 740 (926)
T ss_pred HHHHHHHHHh-----CCCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEE--------ecCC
Confidence 9999999975 24789999999999999999999999999999999999999999999999998 4432
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
. -+-++|.||+||+||.|. |.||.++
T Consensus 741 ~---------~gls~l~Qr~GRvGR~g~~g~aill~ 767 (926)
T TIGR00580 741 K---------FGLAQLYQLRGRVGRSKKKAYAYLLY 767 (926)
T ss_pred C---------CCHHHHHHHhcCCCCCCCCeEEEEEE
Confidence 1 123578899999999987 9999988
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.3e-27 Score=285.80 Aligned_cols=105 Identities=30% Similarity=0.426 Sum_probs=102.1
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
+|+||||||+++|+.|+++++|||+|+||+++||+||+||+.|+.+|+|+||||.+++++|++.|+.+||+|++|+|| +
T Consensus 329 ~G~cyrL~t~~~~~~l~~~~~PEI~r~dL~~~~L~l~~~g~~~~~~~~~ld~P~~~~~~~A~~~L~~lgald~~g~lT-~ 407 (812)
T PRK11664 329 PGICLHLYSKEQAERAAAQSEPEILHSDLSGLLLELLQWGCHDPAQLSWLDQPPAAALAAAKRLLQQLGALDGQGRLT-A 407 (812)
T ss_pred CcEEEEecCHHHHhhCccCCCCceeccchHHHHHHHHHcCCCCHHhCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
+|++|++||+||++|+|||.+.++++
T Consensus 408 ~G~~m~~lp~~Prla~~ll~a~~~~~ 433 (812)
T PRK11664 408 RGRKMAALGNDPRLAAMLVAAKEDDE 433 (812)
T ss_pred HHHHHHhcCCchHHHHHHHHHHhcCc
Confidence 99999999999999999999877654
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=6.9e-26 Score=272.61 Aligned_cols=309 Identities=13% Similarity=0.102 Sum_probs=190.0
Q ss_pred ccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEcc
Q psy2470 174 EMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRS 253 (858)
Q Consensus 174 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~ 253 (858)
...|.++..|...+ ..+...++.+. |-..-+.|+||||||+ ++.+|.+... .. ..++++++
T Consensus 257 ~l~f~lt~~Q~~ai-~~I~~d~~~~~-~~~~Ll~~~TGSGKT~-----va~~~il~~~-------~~-----g~q~lila 317 (681)
T PRK10917 257 SLPFELTGAQKRVV-AEILADLASPK-PMNRLLQGDVGSGKTV-----VAALAALAAI-------EA-----GYQAALMA 317 (681)
T ss_pred hCCCCCCHHHHHHH-HHHHHhhhccC-CceEEEECCCCCcHHH-----HHHHHHHHHH-------Hc-----CCeEEEEe
Confidence 35666655544222 22333333221 4455668999999994 4444433211 11 23689999
Q ss_pred chHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc----------eeecceeEEEeecCccccCCCccCCCcccEEEec
Q psy2470 254 SIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR----------MKILVSKIFKMSQGKPSDSGVEPISQSYLVELSI 323 (858)
Q Consensus 254 PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~----------~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l 323 (858)
||++||.|+++.+.+.+ ...|.. ++...+... .....++|+|+|||++.+ ...+.++.++ -+
T Consensus 318 PT~~LA~Q~~~~l~~l~-~~~~i~---v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~v~~~~l~lv-VI 389 (681)
T PRK10917 318 PTEILAEQHYENLKKLL-EPLGIR---VALLTGSLKGKERREILEAIASGEADIVIGTHALIQD---DVEFHNLGLV-II 389 (681)
T ss_pred ccHHHHHHHHHHHHHHH-hhcCcE---EEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc---cchhcccceE-EE
Confidence 99999999998875443 223333 333333222 112358999999998865 1223444433 00
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH-hhcccCCCCcEEE-ecCeecceeEEEecCCccch
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF-YNISASSNATILS-VKGHLYPVSVYYSNDPVVNY 401 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~-~~~~~~~~~~~i~-v~g~~~~v~~~~~~~~~~~~ 401 (858)
| |...|.......+. ......++++||||.....++.. ++. .+...+. .+....|++..+.....
T Consensus 390 D--E~Hrfg~~qr~~l~-----~~~~~~~iL~~SATp~prtl~~~~~g~---~~~s~i~~~p~~r~~i~~~~~~~~~--- 456 (681)
T PRK10917 390 D--EQHRFGVEQRLALR-----EKGENPHVLVMTATPIPRTLAMTAYGD---LDVSVIDELPPGRKPITTVVIPDSR--- 456 (681)
T ss_pred e--chhhhhHHHHHHHH-----hcCCCCCEEEEeCCCCHHHHHHHHcCC---CceEEEecCCCCCCCcEEEEeCccc---
Confidence 1 11111122222222 22345789999999865554432 221 0112221 12223456665554322
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCC--------HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIG--------LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR 473 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t--------~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~ 473 (858)
.+..++.+.... ...++++||||. ...++.+++.|.+. .+++.+..+||+|++++|.++++.|++
T Consensus 457 ~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~-----~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 457 RDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEA-----FPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred HHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHH-----CCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 223334444333 235789999995 34556677777754 125789999999999999999999999
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.+|||||+++|+|+|||++++||+ ||+.. -+.+++.||+||+||.|. |.||.++
T Consensus 530 g~~~ILVaT~vie~GiDip~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~ill~ 586 (681)
T PRK10917 530 GEIDILVATTVIEVGVDVPNATVMVI--------ENAER---------FGLAQLHQLRGRVGRGAAQSYCVLLY 586 (681)
T ss_pred CCCCEEEECcceeeCcccCCCcEEEE--------eCCCC---------CCHHHHHHHhhcccCCCCceEEEEEE
Confidence 99999999999999999999999999 55321 124678899999999986 9999987
|
|
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=99.93 E-value=7e-27 Score=282.32 Aligned_cols=105 Identities=32% Similarity=0.457 Sum_probs=102.2
Q ss_pred ccceeeccCHHHHhccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchH
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKP 120 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~ 120 (858)
+|+||||||+++|+.|.+++.|||+|+||++++|+||+||+.|+.+|+|+||||.+++.+|++.|+.+||+|++|+|| +
T Consensus 326 ~G~cyrL~t~~~~~~l~~~~~PEI~r~~L~~~~L~l~~~g~~~~~~~~~l~~P~~~~i~~a~~~L~~lgald~~~~lT-~ 404 (819)
T TIGR01970 326 PGVCYRLWSEEQHQRLPAQDEPEILQADLSGLALELAQWGAKDPSDLRWLDAPPSVALAAARQLLQRLGALDAQGRLT-A 404 (819)
T ss_pred CCEEEEeCCHHHHHhhhcCCCcceeccCcHHHHHHHHHcCCCChhhCCCCCCcCHHHHHHHHHHHHHCCCCCCCCCcC-H
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999999 7
Q ss_pred HHhhhhcCCCCchhhhHHhhcccccc
Q psy2470 121 VGETMAEMPLHPIHAKVLLSSGSVLD 146 (858)
Q Consensus 121 lG~~ma~lp~~p~~~~~l~~s~s~~~ 146 (858)
+|++|++||+||++|+||+.+..++|
T Consensus 405 ~G~~~~~lp~~p~l~~~ll~~~~~~~ 430 (819)
T TIGR01970 405 HGKAMAALGCHPRLAAMLLSAHSTGL 430 (819)
T ss_pred HHHHHHhcCCCHHHHHHHHHhhhcCC
Confidence 99999999999999999999877764
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >TIGR01587 cas3_core CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=99.93 E-value=5e-26 Score=255.46 Aligned_cols=286 Identities=14% Similarity=0.094 Sum_probs=169.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee---
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG--- 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG--- 282 (858)
+.|+||||||.+ +.+|.+. .+.. + ...+++++.|+|+++.|+++++.+.+|..+|..++..-
T Consensus 4 i~apTGsGKT~~-----~~~~~l~----~~~~---~---~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~ 68 (358)
T TIGR01587 4 IEAPTGYGKTEA-----ALLWALH----SIKS---Q---KADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKR 68 (358)
T ss_pred EEeCCCCCHHHH-----HHHHHHH----HHhh---C---CCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHH
Confidence 579999999943 3333221 1111 1 11257999999999999999998777765543311110
Q ss_pred EEEec-----cce---------eecceeEEEeecCcccc-CCCcc---C--C----CcccEE----EecCCCCCchhhhh
Q psy2470 283 YMFRK-----GRM---------KILVSKIFKMSQGKPSD-SGVEP---I--S----QSYLVE----LSILAPGGQDVIGE 334 (858)
Q Consensus 283 ~~vr~-----~~~---------~~~~t~I~v~TpGrLl~-~~~~~---~--L----~~~~vl----R~l~~~~~~d~ll~ 334 (858)
+.... +.. ......|+++||+.++. +..+. . + .++-|+ ++.+ .+.+++..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~--~~~~~l~~ 146 (358)
T TIGR01587 69 IKEMGDSEEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDE--YTLALILA 146 (358)
T ss_pred HhccCCchhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCH--HHHHHHHH
Confidence 00000 000 00135799999999988 44311 0 1 123344 3333 11122222
Q ss_pred HHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeec-ce-eEEE--ecCCccchHHHHHHHHH
Q psy2470 335 DMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLY-PV-SVYY--SNDPVVNYVQGVVDTAI 410 (858)
Q Consensus 335 ~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~-~v-~~~~--~~~~~~~~~~~~~~~l~ 410 (858)
+++.+. +.+.|+++||||++ +.+.+++..... .......+.... .. ...+ .......... ....+.
T Consensus 147 ~l~~l~-------~~~~~~i~~SATlp-~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~l~ 216 (358)
T TIGR01587 147 VLEVLK-------DNDVPILLMSATLP-KFLKEYAEKIGY-VEFNEPLDLKEERRFERHRFIKIESDKVGEIS-SLERLL 216 (358)
T ss_pred HHHHHH-------HcCCCEEEEecCch-HHHHHHHhcCCC-cccccCCCCccccccccccceeeccccccCHH-HHHHHH
Confidence 222221 35689999999995 445555542100 000000010000 00 0111 1111111111 122222
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHH----hcCCCCCCcEEEEEecCccc
Q psy2470 411 KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK----VFRPTPRAMRKIVIATNIAE 486 (858)
Q Consensus 411 ~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~----v~~~f~~g~~kVlvATdvAe 486 (858)
+.. ..++++|||++|+++++.+++.|++.. ++..+..+||++++.+|.+ +++.|++|+.+||||||++|
T Consensus 217 ~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~-----~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~ 289 (358)
T TIGR01587 217 EFI--KKGGKIAIIVNTVDRAQEFYQQLKENA-----PEEEIMLLHSRFTEKDRAKKEAELLEEMKKNEKFVIVATQVIE 289 (358)
T ss_pred HHh--hCCCeEEEEECCHHHHHHHHHHHHhhc-----CCCeEEEEECCCCHHHHHHHHHHHHHHhcCCCCeEEEECcchh
Confidence 222 246899999999999999999998651 2457999999999999976 48899999999999999999
Q ss_pred ccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC--c---eEEEeh
Q psy2470 487 TSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS--G---HVYRKN 546 (858)
Q Consensus 487 rgldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~--G---~~~rL~ 546 (858)
+|+||+ +++||+ |+ .+.++|+||+||+||.|+ | .+|-++
T Consensus 290 ~GiDi~-~~~vi~--------~~------------~~~~~~iqr~GR~gR~g~~~~~~~~~~v~~ 333 (358)
T TIGR01587 290 ASLDIS-ADVMIT--------EL------------APIDSLIQRLGRLHRYGRKNGENFEVYIIT 333 (358)
T ss_pred ceeccC-CCEEEE--------cC------------CCHHHHHHHhccccCCCCCCCCCCeEEEEe
Confidence 999995 788888 43 346789999999999875 3 566655
|
This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model. |
| >TIGR01389 recQ ATP-dependent DNA helicase RecQ | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-26 Score=270.86 Aligned_cols=282 Identities=16% Similarity=0.109 Sum_probs=181.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.++|||||| .++++|.+.. .| .++|++|+++|+.|...++ +++|..+....+++....
T Consensus 33 v~~PTG~GKT-----l~y~lpal~~---------~g------~~lVisPl~sL~~dq~~~l-~~~gi~~~~~~s~~~~~~ 91 (591)
T TIGR01389 33 VVMPTGGGKS-----LCYQVPALLL---------KG------LTVVISPLISLMKDQVDQL-RAAGVAAAYLNSTLSAKE 91 (591)
T ss_pred EEcCCCccHh-----HHHHHHHHHc---------CC------cEEEEcCCHHHHHHHHHHH-HHcCCcEEEEeCCCCHHH
Confidence 4699999999 5566665431 11 3699999999998877766 445654332211111000
Q ss_pred ec---cceeecceeEEEeecCcccc--CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 RK---GRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r~---~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
+. ........+|+|+||++|.. ........+++++ ..+. .-|.||-..+.+. . .+. ..-+..++++
T Consensus 92 ~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~-~~g~~frp~y~~l-~-~l~-~~~~~~~vi~ 167 (591)
T TIGR01389 92 QQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVS-QWGHDFRPEYQRL-G-SLA-ERFPQVPRIA 167 (591)
T ss_pred HHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccc-cccCccHHHHHHH-H-HHH-HhCCCCCEEE
Confidence 00 00112346899999999976 2222222344433 2222 1123443332221 1 111 1123445999
Q ss_pred EecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHH
Q psy2470 356 SSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIE 432 (858)
Q Consensus 356 ~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~ 432 (858)
+|||.+.. .+.+++.. ..+.+.+.+-. ....+|......+ ....+...+.....++.||||+|+++++
T Consensus 168 lTAT~~~~~~~~i~~~l~~----~~~~~~~~~~~-r~nl~~~v~~~~~----~~~~l~~~l~~~~~~~~IIf~~sr~~~e 238 (591)
T TIGR01389 168 LTATADAETRQDIRELLRL----ADANEFITSFD-RPNLRFSVVKKNN----KQKFLLDYLKKHRGQSGIIYASSRKKVE 238 (591)
T ss_pred EEeCCCHHHHHHHHHHcCC----CCCCeEecCCC-CCCcEEEEEeCCC----HHHHHHHHHHhcCCCCEEEEECcHHHHH
Confidence 99999543 34455542 12222222211 1122232211122 2233444444444678999999999999
Q ss_pred HHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 433 HIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 433 ~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+++.|... ++.+.++||+|++++|..+++.|.+|..+|||||+++++|||+|+|++||+ |+
T Consensus 239 ~la~~L~~~-------g~~~~~~H~~l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~--------~~--- 300 (591)
T TIGR01389 239 ELAERLESQ-------GISALAYHAGLSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIH--------YD--- 300 (591)
T ss_pred HHHHHHHhC-------CCCEEEEECCCCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEE--------cC---
Confidence 999999876 888999999999999999999999999999999999999999999999999 66
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|.++|.||+|||||.|. |.|+.+|
T Consensus 301 -------~p~s~~~y~Q~~GRaGR~G~~~~~il~~ 328 (591)
T TIGR01389 301 -------MPGNLESYYQEAGRAGRDGLPAEAILLY 328 (591)
T ss_pred -------CCCCHHHHhhhhccccCCCCCceEEEec
Confidence 57889999999999999996 9999888
|
The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. |
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=269.45 Aligned_cols=316 Identities=13% Similarity=0.078 Sum_probs=186.9
Q ss_pred ccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEcc
Q psy2470 174 EMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRS 253 (858)
Q Consensus 174 e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~ 253 (858)
...|.+...|...+ ..+...+... .|-..-+.|+||||||++++.+++.. + +. ..++++++
T Consensus 231 ~lpf~lt~~Q~~ai-~~I~~~~~~~-~~~~~Ll~g~TGSGKT~va~l~il~~---------~---~~-----g~qvlila 291 (630)
T TIGR00643 231 SLPFKLTRAQKRVV-KEILQDLKSD-VPMNRLLQGDVGSGKTLVAALAMLAA---------I---EA-----GYQVALMA 291 (630)
T ss_pred hCCCCCCHHHHHHH-HHHHHHhccC-CCccEEEECCCCCcHHHHHHHHHHHH---------H---Hc-----CCcEEEEC
Confidence 45565555443222 1222233222 24455678999999994443322221 1 11 13689999
Q ss_pred chHHHHHHHHHHHHHHh---CCcCccEeeeeeEEEe---ccceeecceeEEEeecCccccCCCccCCCcccEEEecCCCC
Q psy2470 254 SIDVACSCTVVEFLTEM---GCRMDFEYISRGYMFR---KGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPG 327 (858)
Q Consensus 254 PtR~la~qva~~v~~e~---g~~~g~~~~~vG~~vr---~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~ 327 (858)
||++||.|+++.+.+.+ |.+++..+|++.-.-+ ........++|+|+||+++.+ +..+.++.++ -+| |
T Consensus 292 PT~~LA~Q~~~~~~~l~~~~gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~---~~~~~~l~lv-VID--E 365 (630)
T TIGR00643 292 PTEILAEQHYNSLRNLLAPLGIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE---KVEFKRLALV-IID--E 365 (630)
T ss_pred CHHHHHHHHHHHHHHHhcccCcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc---cccccccceE-EEe--c
Confidence 99999999998876543 3443333111110000 001112347999999998865 1223444444 001 0
Q ss_pred CchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH-hhcccCCCCcEE-EecCeecceeEEEecCCccchHHHH
Q psy2470 328 GQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF-YNISASSNATIL-SVKGHLYPVSVYYSNDPVVNYVQGV 405 (858)
Q Consensus 328 ~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~-~~~~~~~~~~~i-~v~g~~~~v~~~~~~~~~~~~~~~~ 405 (858)
...|-......+.+.. ......|+++||||.....++.. ++.. +...+ ..+....|+..++..... .+..
T Consensus 366 aH~fg~~qr~~l~~~~--~~~~~~~~l~~SATp~prtl~l~~~~~l---~~~~i~~~p~~r~~i~~~~~~~~~---~~~~ 437 (630)
T TIGR00643 366 QHRFGVEQRKKLREKG--QGGFTPHVLVMSATPIPRTLALTVYGDL---DTSIIDELPPGRKPITTVLIKHDE---KDIV 437 (630)
T ss_pred hhhccHHHHHHHHHhc--ccCCCCCEEEEeCCCCcHHHHHHhcCCc---ceeeeccCCCCCCceEEEEeCcch---HHHH
Confidence 0111111112222110 10125789999999855544432 2200 11122 122223466665544321 1223
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCH--------HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGL--------EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~--------~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
...+.+... ..++++||+|.. ..++.+++.|.+.. +++.+..+||+|++++|.++++.|++|+.+
T Consensus 438 ~~~i~~~l~--~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~-----~~~~v~~lHG~m~~~eR~~i~~~F~~g~~~ 510 (630)
T TIGR00643 438 YEFIEEEIA--KGRQAYVVYPLIEESEKLDLKAAEALYERLKKAF-----PKYNVGLLHGRMKSDEKEAVMEEFREGEVD 510 (630)
T ss_pred HHHHHHHHH--hCCcEEEEEccccccccchHHHHHHHHHHHHhhC-----CCCcEEEEeCCCCHHHHHHHHHHHHcCCCC
Confidence 333332222 357899999975 45666777776541 378899999999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|||||+++|+|||+|++++||+ ||+.. -+.+++.||+||+||.|. |.||.++
T Consensus 511 ILVaT~vie~GvDiP~v~~VIi--------~~~~r---------~gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 511 ILVATTVIEVGVDVPNATVMVI--------EDAER---------FGLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred EEEECceeecCcccCCCcEEEE--------eCCCc---------CCHHHHHHHhhhcccCCCCcEEEEEE
Confidence 9999999999999999999999 55321 135678899999999986 9999987
|
|
| >COG1204 Superfamily II helicase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1e-23 Score=252.47 Aligned_cols=407 Identities=15% Similarity=0.142 Sum_probs=253.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISR 281 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~v 281 (858)
+-+.||||||||+.+ .+.++.....| ...++=++|+|.||.+.++++. +++|.+++.. .
T Consensus 50 ~li~aPTgsGKTlIA------------~lai~~~l~~~----~~k~vYivPlkALa~Ek~~~~~~~~~~GirV~~~---T 110 (766)
T COG1204 50 VLISAPTGSGKTLIA------------LLAILSTLLEG----GGKVVYIVPLKALAEEKYEEFSRLEELGIRVGIS---T 110 (766)
T ss_pred EEEEcCCCCchHHHH------------HHHHHHHHHhc----CCcEEEEeChHHHHHHHHHHhhhHHhcCCEEEEe---c
Confidence 346799999999111 11111111111 2246889999999999999997 5677776655 4
Q ss_pred eEEEeccceeecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCch----hhhhHHHHHHHHhcccCCCC
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQD----VIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d----~ll~~lk~~~~~l~~~~~~~ 350 (858)
|- .+.....-..++|+|+||-.+-- ..+.+ .+..++++ .++. .+ .+..+...+. ...+.
T Consensus 111 gD-~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~----d~~RG~~lE~iv~r~~-----~~~~~ 180 (766)
T COG1204 111 GD-YDLDDERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLG----DRTRGPVLESIVARMR-----RLNEL 180 (766)
T ss_pred CC-cccchhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecC----CcccCceehhHHHHHH-----hhCcc
Confidence 41 11122223568999999998865 43333 34455544 6666 33 2233333333 34456
Q ss_pred ceEEEEeccc-CHHHHHHHhhcccCC--CCcEEEecCeecceeEEEecCCcc----chHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 351 LKLIISSATV-DAEEICQFYNISASS--NATILSVKGHLYPVSVYYSNDPVV----NYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 351 ~q~il~SAT~-~~~~~~~~~~~~~~~--~~~~i~v~g~~~~v~~~~~~~~~~----~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
.|++.+|||+ |.+.+++|++..... -.|+-...+..+....++.....+ .........+...+. ..|++||
T Consensus 181 ~rivgLSATlpN~~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~--~~~qvLv 258 (766)
T COG1204 181 IRIVGLSATLPNAEEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLA--EGGQVLV 258 (766)
T ss_pred eEEEEEeeecCCHHHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHh--cCCeEEE
Confidence 8999999999 999999999842110 001100111111112222221111 111233333444333 3789999
Q ss_pred EcCCHHHHHHHHHHHHHhcc--CC---------CCcc-------------------eEEEeccCCCCHHHHHHhcCCCCC
Q psy2470 424 FVIGLEQIEHIIGILKQYHN--QR---------EDLK-------------------LLILPMHGSLPNNEQIKVFRPTPR 473 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~--~~---------~~~~-------------------~~v~~LHg~l~q~~r~~v~~~f~~ 473 (858)
|++++.+....++.|+.... .. .... ..+.-.|++|+.++|.-+.+.|+.
T Consensus 259 Fv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~ 338 (766)
T COG1204 259 FVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRK 338 (766)
T ss_pred EEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhc
Confidence 99999999999999983100 00 0001 124567999999999999999999
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh---h
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN---F 547 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~---~ 547 (858)
|++|||+||+..+.|++.|.-++||- | ..+||+..| ..++++-++.|+.|||||.|= |..+.+- +
T Consensus 339 g~ikVlv~TpTLA~GVNLPA~~VIIk-~---~~~y~~~~g-----~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~~~~~ 409 (766)
T COG1204 339 GKIKVLVSTPTLAAGVNLPARTVIIK-D---TRRYDPKGG-----IVDIPVLDVLQMAGRAGRPGYDDYGEAIILATSHD 409 (766)
T ss_pred CCceEEEechHHhhhcCCcceEEEEe-e---eEEEcCCCC-----eEECchhhHhhccCcCCCCCcCCCCcEEEEecCcc
Confidence 99999999999999999999888883 1 344887444 378999999999999999873 5555444 2
Q ss_pred hHhhhhhhhhccCCCCCCCCCCCccccCcccchhhh----------------HHHHHHHhhhHhHhHhhhCCCCCccccc
Q psy2470 548 MYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFF----------------SFFQYLLEAGWCYDTKLIGITEPRRISV 611 (858)
Q Consensus 548 ~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~----------------~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 611 (858)
+-+...+ . ++.++||...+.|.++..++ ....|+..+ +...+......
T Consensus 410 ~~~~~~~-----~---~~~~~~e~~~s~l~~~~~~~~~l~~v~~~~~~v~~~~~~~f~~~t--------~~~~~~~~~~~ 473 (766)
T COG1204 410 ELEYLAE-----L---YIQSEPEPIESKLGDELNLRTFLLGVISVGDAVSWLELTDFYERT--------FYNPQTYGEGM 473 (766)
T ss_pred chhHHHH-----H---hhccCcchHHHhhcccccchheEEEEEeccchhhHHHHHHHHHHH--------Hhhhhhccccc
Confidence 2223333 3 44556888888888777666 222233322 33333223344
Q ss_pred CCchHHHHHHHHHhcC-CeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeeccccccc
Q psy2470 612 TSLANRVSEELRTTLG-HTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERT 680 (858)
Q Consensus 612 l~~a~~~a~~~L~~lg-~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~ 680 (858)
+...+..+++.|.+.+ .+ + ........| .+|..++++++||.++++ +.|.+.+-.
T Consensus 474 ~~~~i~~~~~~L~~~~~~~-----~-~~~~~~~at-----e~g~~~s~~yi~~~sa~~---~~~~l~~~~ 529 (766)
T COG1204 474 LREEILASLRYLEENGLIL-----D-ADWEALHAT-----ELGKLVSRLYIDPESAKI---FRDLLAELA 529 (766)
T ss_pred hHHHHHHHHHHHHhcccee-----e-ccccccchh-----HHHHHhhhccCCHHHHHH---HHHHHHHhc
Confidence 4557778888888876 33 2 222222246 899999999999999988 555444443
|
|
| >PRK12898 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-24 Score=246.38 Aligned_cols=159 Identities=19% Similarity=0.132 Sum_probs=114.3
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecceeEE---EecCCccchHHHHHHHHHHHHhhC--CCCCEEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVSVY---YSNDPVVNYVQGVVDTAIKIHESM--PVGDILAF 424 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~---~~~~~~~~~~~~~~~~l~~i~~~~--~~g~iLVF 424 (858)
++..||||. ..++|.+.++. .++.||-........ +...... .+...+.+.+... .+.++|||
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l------~vv~IPt~kp~~r~~~~~~v~~t~~----~K~~aL~~~i~~~~~~~~pvLIf 479 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGL------PVVRIPTNRPSQRRHLPDEVFLTAA----AKWAAVAARVRELHAQGRPVLVG 479 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCC------CeEEeCCCCCccceecCCEEEeCHH----HHHHHHHHHHHHHHhcCCCEEEE
Confidence 445689998 34567777762 345555322111111 1111112 2333344433221 24679999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC---Cee-----E
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---GIV-----Y 496 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---~V~-----~ 496 (858)
++|+++++.+++.|.+. |+.+..|||++++.++..+..++++| +|+||||+|+||+||+ +|. |
T Consensus 480 t~t~~~se~L~~~L~~~-------gi~~~~Lhg~~~~rE~~ii~~ag~~g--~VlVATdmAgRGtDI~l~~~V~~~GGLh 550 (656)
T PRK12898 480 TRSVAASERLSALLREA-------GLPHQVLNAKQDAEEAAIVARAGQRG--RITVATNMAGRGTDIKLEPGVAARGGLH 550 (656)
T ss_pred eCcHHHHHHHHHHHHHC-------CCCEEEeeCCcHHHHHHHHHHcCCCC--cEEEEccchhcccCcCCccchhhcCCCE
Confidence 99999999999999987 89999999997777766666555544 6999999999999999 776 9
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEehh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKNF 547 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~~ 547 (858)
||| || .|.|...|.||+|||||.|. |.|+.++.
T Consensus 551 VI~--------~d----------~P~s~r~y~hr~GRTGRqG~~G~s~~~is 584 (656)
T PRK12898 551 VIL--------TE----------RHDSARIDRQLAGRCGRQGDPGSYEAILS 584 (656)
T ss_pred EEE--------cC----------CCCCHHHHHHhcccccCCCCCeEEEEEec
Confidence 999 66 78889999999999999997 99999883
|
|
| >PRK09401 reverse gyrase; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.8e-24 Score=269.79 Aligned_cols=277 Identities=14% Similarity=0.081 Sum_probs=167.1
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGY 283 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~ 283 (858)
-++|+|||||| . |.+|...+. . . ...+++|++|||+||.|+++++. .++...+..... .|.
T Consensus 99 ~i~ApTGsGKT-----~-f~l~~~~~l----~--~-----~g~~alIL~PTreLa~Qi~~~l~-~l~~~~~~~~~~~~g~ 160 (1176)
T PRK09401 99 AIIAPTGVGKT-----T-FGLVMSLYL----A--K-----KGKKSYIIFPTRLLVEQVVEKLE-KFGEKVGCGVKILYYH 160 (1176)
T ss_pred EEEcCCCCCHH-----H-HHHHHHHHH----H--h-----cCCeEEEEeccHHHHHHHHHHHH-HHhhhcCceEEEEEcc
Confidence 45799999999 2 333333321 1 1 12358999999999999988874 445444443111 111
Q ss_pred E-Ee---ccce----eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchh---hhhHH----HHHHHH
Q psy2470 284 M-FR---KGRM----KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDV---IGEDM----KAFAEQ 342 (858)
Q Consensus 284 ~-vr---~~~~----~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~---ll~~l----k~~~~~ 342 (858)
+ .. .... .....+|+|+|||+|.+........++.++ ++++..-..|- ++||. +.+.+.
T Consensus 161 ~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~~~~i~~i~~~ 240 (1176)
T PRK09401 161 SSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFDELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFSEEDIEKAMEL 240 (1176)
T ss_pred CCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccCEEEEEChHHhhhcccchhhHHHhCCCCHHHHHHHHHh
Confidence 1 00 0101 123479999999999982223233335444 55531101110 12331 111111
Q ss_pred hcc--------------------cCCCCceEEEEecccCHHHHH-HHhhcccCCCCcEEEecCee---cceeEEEecCCc
Q psy2470 343 LKP--------------------LKRTQLKLIISSATVDAEEIC-QFYNISASSNATILSVKGHL---YPVSVYYSNDPV 398 (858)
Q Consensus 343 l~~--------------------~~~~~~q~il~SAT~~~~~~~-~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~ 398 (858)
+.. ..+.+.|+++||||++.+... ..|. +.-.+.+.... .++.+.|....
T Consensus 241 i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~-----~ll~~~v~~~~~~~rnI~~~yi~~~- 314 (1176)
T PRK09401 241 IRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFR-----ELLGFEVGSPVFYLRNIVDSYIVDE- 314 (1176)
T ss_pred cccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhh-----ccceEEecCcccccCCceEEEEEcc-
Confidence 110 012268999999999643222 2232 12223332221 24555555432
Q ss_pred cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH---HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc
Q psy2470 399 VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ---IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM 475 (858)
Q Consensus 399 ~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~---i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~ 475 (858)
+ +...+..+.... ++++||||++++. ++.+++.|+.. |+.+..+||+| .+.+++|++|+
T Consensus 315 -~----k~~~L~~ll~~l-~~~~LIFv~t~~~~~~ae~l~~~L~~~-------gi~v~~~hg~l-----~~~l~~F~~G~ 376 (1176)
T PRK09401 315 -D----SVEKLVELVKRL-GDGGLIFVPSDKGKEYAEELAEYLEDL-------GINAELAISGF-----ERKFEKFEEGE 376 (1176)
T ss_pred -c----HHHHHHHHHHhc-CCCEEEEEecccChHHHHHHHHHHHHC-------CCcEEEEeCcH-----HHHHHHHHCCC
Confidence 2 223344444443 3579999999777 99999999987 89999999999 23459999999
Q ss_pred EEEEEe----cCcccccCCCCC-eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 476 RKIVIA----TNIAETSITIPG-IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 476 ~kVlvA----TdvAergldIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
.+|||| ||+|+||||||+ |+||||+|+|+.+. . --..+.+.||.||+-
T Consensus 377 ~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~-~-----------~~~~~~~~~~~~r~~ 429 (1176)
T PRK09401 377 VDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKF-S-----------LEEELAPPFLLLRLL 429 (1176)
T ss_pred CCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEE-e-----------ccccccCHHHHHHHH
Confidence 999999 799999999999 89999999887543 1 012345779999985
|
|
| >KOG0329|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-24 Score=217.38 Aligned_cols=291 Identities=14% Similarity=0.142 Sum_probs=195.9
Q ss_pred cchHHHHHH---HhhhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhh
Q psy2470 145 LDSAVEILL---HRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRR 221 (858)
Q Consensus 145 ~~~~~~~~~---~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~ 221 (858)
-.+...+++ +.+|.+-|-.++-|+..|++-+.-++-+.+. +- .|+.|.||| +
T Consensus 40 hssgfrdfllkpellraivdcgfehpsevqhecipqailgmdv--lc------------------qaksgmgkt-----a 94 (387)
T KOG0329|consen 40 HSSGFRDFLLKPELLRAIVDCGFEHPSEVQHECIPQAILGMDV--LC------------------QAKSGMGKT-----A 94 (387)
T ss_pred eccchhhhhcCHHHHHHHHhccCCCchHhhhhhhhHHhhcchh--he------------------ecccCCCce-----e
Confidence 355566665 4566677777777888888888777766432 22 389999999 4
Q ss_pred hcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHH---HHHHHHhC-CcCccEeeeeeEEEeccceeecceeE
Q psy2470 222 ALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTV---VEFLTEMG-CRMDFEYISRGYMFRKGRMKILVSKI 297 (858)
Q Consensus 222 a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva---~~v~~e~g-~~~g~~~~~vG~~vr~~~~~~~~t~I 297 (858)
.|.+. -+.|.++-.| ...++|++.|||+|.|+. +|+++.|. .++..-|||.......+-.. ..+||
T Consensus 95 vfvl~-------tlqqiepv~g--~vsvlvmchtrelafqi~~ey~rfskymP~vkvaVFfGG~~Ikkdee~lk-~~Phi 164 (387)
T KOG0329|consen 95 VFVLA-------TLQQIEPVDG--QVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLFIKKDEELLK-NCPHI 164 (387)
T ss_pred eeehh-------hhhhcCCCCC--eEEEEEEeccHHHHHHHHHHHHHHHhhCCCceEEEEEcceeccccHHHHh-CCCeE
Confidence 44443 3445554333 345799999999999995 46777765 45666666555433322222 36899
Q ss_pred EEeecCccccCCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHH
Q psy2470 298 FKMSQGKPSDSGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQ 367 (858)
Q Consensus 298 ~v~TpGrLl~~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~ 367 (858)
+|+||||++.+.. ...|+++.+. .||+ + +.+.++++++. ...|.+.|+++||||+ ++...+.
T Consensus 165 vVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle----~---lDMrRDvQEif-r~tp~~KQvmmfsatlskeiRpvC~ 236 (387)
T KOG0329|consen 165 VVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLE----Q---LDMRRDVQEIF-RMTPHEKQVMMFSATLSKEIRPVCH 236 (387)
T ss_pred EEcCcHHHHHHHHhccCchhhcceeehhhHHHHHH----H---HHHHHHHHHHh-hcCcccceeeeeeeecchhhHHHHH
Confidence 9999999999433 3455555443 5555 1 55566666433 2567789999999999 5666777
Q ss_pred HhhcccCCCCcEEEecCee----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc
Q psy2470 368 FYNISASSNATILSVKGHL----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN 443 (858)
Q Consensus 368 ~~~~~~~~~~~~i~v~g~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~ 443 (858)
.|+. +|--+.++... +...++|...... ++...+.+++...+-.+++||+.+-..+.
T Consensus 237 kFmQ----dPmEi~vDdE~KLtLHGLqQ~YvkLke~----eKNrkl~dLLd~LeFNQVvIFvKsv~Rl~----------- 297 (387)
T KOG0329|consen 237 KFMQ----DPMEIFVDDEAKLTLHGLQQYYVKLKEN----EKNRKLNDLLDVLEFNQVVIFVKSVQRLS----------- 297 (387)
T ss_pred hhhc----CchhhhccchhhhhhhhHHHHHHhhhhh----hhhhhhhhhhhhhhhcceeEeeehhhhhh-----------
Confidence 6664 44444444322 4455555543221 23334445554455678999987654310
Q ss_pred CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecC
Q psy2470 444 QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPIS 523 (858)
Q Consensus 444 ~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis 523 (858)
| ..+ +||||+..||+||..|+.|+| || .|-+
T Consensus 298 ---------------------------f---~kr-~vat~lfgrgmdiervNi~~N--------Yd----------mp~~ 328 (387)
T KOG0329|consen 298 ---------------------------F---QKR-LVATDLFGRGMDIERVNIVFN--------YD----------MPED 328 (387)
T ss_pred ---------------------------h---hhh-hHHhhhhccccCcccceeeec--------cC----------CCCC
Confidence 1 123 999999999999999999999 88 7888
Q ss_pred HhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 524 KASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 524 ~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
..+|.||+|||||.|. |.++.+.
T Consensus 329 ~DtYlHrv~rAgrfGtkglaitfv 352 (387)
T KOG0329|consen 329 SDTYLHRVARAGRFGTKGLAITFV 352 (387)
T ss_pred chHHHHHhhhhhccccccceeehh
Confidence 9999999999999998 9999988
|
|
| >PRK09200 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-23 Score=249.10 Aligned_cols=103 Identities=20% Similarity=0.170 Sum_probs=95.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCC---CC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI---PG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldI---p~ 493 (858)
...++||||+|+++++.+++.|.+. ++.+..|||++.++++..+...+++| +|+||||+|+||+|| |+
T Consensus 427 ~~~pvLIf~~t~~~se~l~~~L~~~-------gi~~~~L~~~~~~~e~~~i~~ag~~g--~VlIATdmAgRG~DI~l~~~ 497 (790)
T PRK09200 427 TGRPVLIGTGSIEQSETFSKLLDEA-------GIPHNLLNAKNAAKEAQIIAEAGQKG--AVTVATNMAGRGTDIKLGEG 497 (790)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCccHHHHHHHHHcCCCC--eEEEEccchhcCcCCCcccc
Confidence 4678999999999999999999987 89999999999999999898888877 799999999999999 79
Q ss_pred ee-----EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 494 IV-----YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 494 V~-----~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. |||| || .|.|...|.||+|||||.|. |.|+.++
T Consensus 498 V~~~GGL~VI~--------~d----------~p~s~r~y~qr~GRtGR~G~~G~s~~~i 538 (790)
T PRK09200 498 VHELGGLAVIG--------TE----------RMESRRVDLQLRGRSGRQGDPGSSQFFI 538 (790)
T ss_pred cccccCcEEEe--------cc----------CCCCHHHHHHhhccccCCCCCeeEEEEE
Confidence 99 9999 66 78889999999999999997 9999888
|
|
| >KOG0920|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.8e-25 Score=261.12 Aligned_cols=130 Identities=27% Similarity=0.374 Sum_probs=116.1
Q ss_pred ccceeeccCHHHHhcccc-CCCcccccCChhHHHHHHHHcCCCCCCCCCC--CCCCCHHHHHHHHHHHHhcCccccCCCc
Q psy2470 41 SRKFSRLYTEASFSQLNE-CTPPEMQRTELSSAVLQLKALGIHNILRFSF--PSPPPAQNLRVALELLYSLGAMDVNGNL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~-~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~--~~~P~~~~l~~a~~~L~~l~ald~~~~l 117 (858)
+|+||||||+..|+.+.. +++|||+|.+|.++||++|.|++.++..|-- +|||+.+++.+|++.|+.+||+|.+++|
T Consensus 534 ~G~cy~L~~~~~~~~~~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP~~~~v~~a~~~L~~igaL~~~e~L 613 (924)
T KOG0920|consen 534 PGICYHLYTRSRYEKLMLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPPPADAVDLAIERLKQIGALDESEEL 613 (924)
T ss_pred CCeeEEeechhhhhhcccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCCChHHHHHHHHHHHHhccccCcccc
Confidence 999999999999988766 9999999999999999999999999885332 8999999999999999999999999999
Q ss_pred chHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCccc
Q psy2470 118 TKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFH 171 (858)
Q Consensus 118 t~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~ 171 (858)
| |||+.||.||+||+++||++..+-+. .++..+||+-|.|..+.+++.+..|.
T Consensus 614 T-~LG~~la~lPvd~~igK~ll~g~if~cLdp~l~iaa~Ls~k~PF~~~~~~~~~~~~~~~~~~ 676 (924)
T KOG0920|consen 614 T-PLGLHLASLPVDVRIGKLLLFGAIFGCLDPALTIAAALSFKSPFVSPLGKREEADKAKKLLA 676 (924)
T ss_pred h-HHHHHHHhCCCccccchhheehhhccccchhhhHHHHhccCCCcccCCCchhHHHHHHHHhc
Confidence 9 89999999999999999999966553 34577899999999988887554444
|
|
| >TIGR03714 secA2 accessory Sec system translocase SecA2 | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.2e-22 Score=235.83 Aligned_cols=102 Identities=17% Similarity=0.145 Sum_probs=91.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC----
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---- 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---- 492 (858)
...++|||++|++.++.+++.|.+. |+.+..|||++.++++..+.+++++| +|+||||+|+||+||+
T Consensus 423 ~~~pvLIft~s~~~se~ls~~L~~~-------gi~~~~L~a~~~~~E~~ii~~ag~~g--~VlIATdmAgRGtDI~l~~~ 493 (762)
T TIGR03714 423 TGQPVLLITGSVEMSEIYSELLLRE-------GIPHNLLNAQNAAKEAQIIAEAGQKG--AVTVATSMAGRGTDIKLGKG 493 (762)
T ss_pred CCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCCChHHHHHHHHHcCCCC--eEEEEccccccccCCCCCcc
Confidence 3678999999999999999999987 89999999999999999999988887 7999999999999999
Q ss_pred -----CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 -----GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 -----~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.+||+ |+ .|..+.+ .||+|||||.|. |.|+.+.
T Consensus 494 v~~~GGL~vIit--------~~----------~ps~rid-~qr~GRtGRqG~~G~s~~~i 534 (762)
T TIGR03714 494 VAELGGLAVIGT--------ER----------MENSRVD-LQLRGRSGRQGDPGSSQFFV 534 (762)
T ss_pred ccccCCeEEEEe--------cC----------CCCcHHH-HHhhhcccCCCCceeEEEEE
Confidence 9999999 77 3344445 899999999997 9999887
|
Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii. |
| >TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type | Back alignment and domain information |
|---|
Probab=99.88 E-value=6.8e-22 Score=221.14 Aligned_cols=269 Identities=13% Similarity=0.097 Sum_probs=157.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC---CcCccEeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG---CRMDFEYISR 281 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g---~~~g~~~~~v 281 (858)
-+.|+|||||| .++.+|.+. . . ..++++.|++.++.|.++++.+... ..-+.. +
T Consensus 18 ~i~apTGsGKT-----~~~~~~~l~-------~------~--~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~---v 74 (357)
T TIGR03158 18 FNTAPTGAGKT-----LAWLTPLLH-------G------E--NDTIALYPTNALIEDQTEAIKEFVDVFKPERDVN---L 74 (357)
T ss_pred EEECCCCCCHH-----HHHHHHHHH-------c------C--CCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCce---E
Confidence 34699999999 333333221 0 0 1358999999999998887655431 111111 1
Q ss_pred eEEEe------------------cc--------ceeecceeEEEeecCccccCC----Ccc------CCCcccEE-----
Q psy2470 282 GYMFR------------------KG--------RMKILVSKIFKMSQGKPSDSG----VEP------ISQSYLVE----- 320 (858)
Q Consensus 282 G~~vr------------------~~--------~~~~~~t~I~v~TpGrLl~~~----~~~------~L~~~~vl----- 320 (858)
+...+ ++ ......+.|+++||..+..+. .++ .+.+++.+
T Consensus 75 ~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~DE~ 154 (357)
T TIGR03158 75 LHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFDEF 154 (357)
T ss_pred EEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEecc
Confidence 10000 00 000124677777887775421 111 23555555
Q ss_pred EecCCCCCchhhh---hHHHHHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCe--ec--------
Q psy2470 321 LSILAPGGQDVIG---EDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGH--LY-------- 387 (858)
Q Consensus 321 R~l~~~~~~d~ll---~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~--~~-------- 387 (858)
..++ +...+.++ .....+. ......|+++||||++.. +.+++........+++.++|+ .+
T Consensus 155 H~~~-~~~~~~~~~~l~~~~~~~-----~~~~~~~~i~lSAT~~~~-~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~ 227 (357)
T TIGR03158 155 HLYD-AKQLVGMLFLLAYMQLIR-----FFECRRKFVFLSATPDPA-LILRLQNAKQAGVKIAPIDGEKYQFPDNPELEA 227 (357)
T ss_pred cccC-cccchhhhhhhHHHHHHH-----hhhcCCcEEEEecCCCHH-HHHHHHhccccCceeeeecCcccccCCChhhhc
Confidence 3333 11122222 2222222 222347999999999643 333332100002456666666 11
Q ss_pred ------------ceeEEEecCCc--cchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE
Q psy2470 388 ------------PVSVYYSNDPV--VNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL 453 (858)
Q Consensus 388 ------------~v~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~ 453 (858)
++++.+..... .+.+....+.+.+.+...+++++|||++|++.++.+++.|++. ..++.+.
T Consensus 228 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~-----~~~~~~~ 302 (357)
T TIGR03158 228 DNKTQSFRPVLPPVELELIPAPDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQ-----GLGDDIG 302 (357)
T ss_pred cccccccceeccceEEEEEeCCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhh-----CCCceEE
Confidence 35554443111 1111122233333333345678999999999999999999864 1156788
Q ss_pred eccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc
Q psy2470 454 PMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR 533 (858)
Q Consensus 454 ~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR 533 (858)
.+||.+++++|.++. +.+||||||++|||||||++ +||- .|.+.++|+||+||
T Consensus 303 ~l~g~~~~~~R~~~~------~~~iLVaTdv~~rGiDi~~~-~vi~--------------------~p~~~~~yiqR~GR 355 (357)
T TIGR03158 303 RITGFAPKKDRERAM------QFDILLGTSTVDVGVDFKRD-WLIF--------------------SARDAAAFWQRLGR 355 (357)
T ss_pred eeecCCCHHHHHHhc------cCCEEEEecHHhcccCCCCc-eEEE--------------------CCCCHHHHhhhccc
Confidence 999999999998764 56899999999999999987 5553 14567899999999
Q ss_pred cC
Q psy2470 534 AG 535 (858)
Q Consensus 534 aG 535 (858)
||
T Consensus 356 ~g 357 (357)
T TIGR03158 356 LG 357 (357)
T ss_pred CC
Confidence 98
|
subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system. |
| >KOG0349|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.6e-23 Score=216.92 Aligned_cols=269 Identities=14% Similarity=0.126 Sum_probs=170.0
Q ss_pred ccCEEEccchHHHHHHHHHHHHH---HhC-CcCc--cEeeeeeEEEecccee---ecceeEEEeecCccccCCCcc--CC
Q psy2470 246 ARPTIVRSSIDVACSCTVVEFLT---EMG-CRMD--FEYISRGYMFRKGRMK---ILVSKIFKMSQGKPSDSGVEP--IS 314 (858)
Q Consensus 246 ~~~~LVl~PtR~la~qva~~v~~---e~g-~~~g--~~~~~vG~~vr~~~~~---~~~t~I~v~TpGrLl~~~~~~--~L 314 (858)
.+.++|+.|.||+|.|+..++-+ ... -.+. .. +| ++....+. ..+++|+|+|||||+++.+.. .|
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLm---ig-gv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~l 361 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLM---IG-GVLKRTQCKQLKDGTHIVVGTPGRLLQPISKGLVTL 361 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhh---hh-hHHhHHHHHHhhcCceeeecCchhhhhhhhccceee
Confidence 35689999999999999876532 111 0111 12 22 22332322 367999999999999944432 33
Q ss_pred CcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc---CHHHHHHHhhcccCCCCcEEEecCee
Q psy2470 315 QSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV---DAEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 315 ~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~---~~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
.+..++ +.+-.--.+|++.-+-+++. ++. .-...+|.++.|||+ ++.++.+..+..|. -+...|..
T Consensus 362 t~crFlvlDead~lL~qgy~d~I~r~h~qip-~~t-sdg~rlq~~vCsatlh~feVkk~~ervmhfpt----wVdLkgeD 435 (725)
T KOG0349|consen 362 THCRFLVLDEADLLLGQGYDDKIYRFHGQIP-HMT-SDGFRLQSPVCSATLHIFEVKKVGERVMHFPT----WVDLKGED 435 (725)
T ss_pred eeeEEEEecchhhhhhcccHHHHHHHhccch-hhh-cCCcccccceeeeEEeEEEeeehhhhhccCce----eEeccccc
Confidence 333333 11110011233332322222 000 011358999999998 77777776654321 12222111
Q ss_pred -c--ceeEEE-----------e---------cCCccc----------hHHHHHHHH-----HHHHhhCCCCCEEEEcCCH
Q psy2470 387 -Y--PVSVYY-----------S---------NDPVVN----------YVQGVVDTA-----IKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 387 -~--~v~~~~-----------~---------~~~~~~----------~~~~~~~~l-----~~i~~~~~~g~iLVFl~t~ 428 (858)
. .|..+. . ....++ ........+ ......+.-.++|+||.|+
T Consensus 436 ~vpetvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk 515 (725)
T KOG0349|consen 436 LVPETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTK 515 (725)
T ss_pred ccchhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEecc
Confidence 0 000000 0 000011 111111111 1112233456899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
.+|+.+.+++++.. ...+++++|||+..+.||..-++.|+.+.+|.++|||||+|||||.++.||||
T Consensus 516 ~dcDnLer~~~qkg----g~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~in--------- 582 (725)
T KOG0349|consen 516 QDCDNLERMMNQKG----GKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMIN--------- 582 (725)
T ss_pred ccchHHHHHHHHcC----CccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEE---------
Confidence 99999999998652 23799999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|-.+.+|+||+||.||+.+ |.+++|.
T Consensus 583 ---------vtlpd~k~nyvhrigrvgraermglaislv 612 (725)
T KOG0349|consen 583 ---------VTLPDDKTNYVHRIGRVGRAERMGLAISLV 612 (725)
T ss_pred ---------EecCcccchhhhhhhccchhhhcceeEEEe
Confidence 2368888999999999999988 9999987
|
|
| >COG1202 Superfamily II helicase, archaea-specific [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.9e-21 Score=213.88 Aligned_cols=361 Identities=14% Similarity=0.087 Sum_probs=239.4
Q ss_pred CEEEccchHHHHHHHHHHHHHH---hCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CCCccCCCcc
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTE---MGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SGVEPISQSY 317 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e---~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~~~L~~~ 317 (858)
..|-++|.-.||.|=.+.+.+. +|..+... ||.+--..+ ..+...+|+|+|.-=+-. +.....+.++
T Consensus 263 KmlfLvPLVALANQKy~dF~~rYs~Lglkvair---VG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg~~lgdi 339 (830)
T COG1202 263 KMLFLVPLVALANQKYEDFKERYSKLGLKVAIR---VGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTGKDLGDI 339 (830)
T ss_pred eEEEEehhHHhhcchHHHHHHHhhcccceEEEE---echhhhcccCCccccCCCCCCcEEEeechhHHHHHHcCCccccc
Confidence 3688999999999988877554 34444444 553211111 122457999999843322 4444677777
Q ss_pred cEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeE
Q psy2470 318 LVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSV 391 (858)
Q Consensus 318 ~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~ 391 (858)
.++ .||+..+----+.|++..+. ..-++.|.|.+|||+ |.+.++++++ +..+.-++|..|.+-
T Consensus 340 GtVVIDEiHtL~deERG~RLdGLI~RLr-----~l~~~AQ~i~LSATVgNp~elA~~l~------a~lV~y~~RPVplEr 408 (830)
T COG1202 340 GTVVIDEIHTLEDEERGPRLDGLIGRLR-----YLFPGAQFIYLSATVGNPEELAKKLG------AKLVLYDERPVPLER 408 (830)
T ss_pred ceEEeeeeeeccchhcccchhhHHHHHH-----HhCCCCeEEEEEeecCChHHHHHHhC------CeeEeecCCCCChhH
Confidence 766 77771111123456776666 556799999999999 9999999997 667777777666664
Q ss_pred EEecCCccchHHHHHHHHHHHHhh--------CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 392 YYSNDPVVNYVQGVVDTAIKIHES--------MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 392 ~~~~~~~~~~~~~~~~~l~~i~~~--------~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
+....... .++++.+..+.+. .-.|+.|||.+++..|+.++..|... |+++.|+|++|++.+
T Consensus 409 Hlvf~~~e---~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~k-------G~~a~pYHaGL~y~e 478 (830)
T COG1202 409 HLVFARNE---SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGK-------GLKAAPYHAGLPYKE 478 (830)
T ss_pred eeeeecCc---hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcC-------CcccccccCCCcHHH
Confidence 44432211 2344444444332 23699999999999999999999876 999999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---Cc
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SG 540 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G 540 (858)
|..+...|.++...++|+|--++.|+|.|.-.++..+ -..| ..|.|..++.|+.|||||.+ +|
T Consensus 479 Rk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEs---------LaMG-----~~WLs~~EF~QM~GRAGRp~yHdrG 544 (830)
T COG1202 479 RKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFES---------LAMG-----IEWLSVREFQQMLGRAGRPDYHDRG 544 (830)
T ss_pred HHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHH---------HHcc-----cccCCHHHHHHHhcccCCCCcccCc
Confidence 9999999999999999999999999999986655541 1122 26999999999999999987 39
Q ss_pred eEEEeh---hhHhh-hhhh--hhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhHhHhhhCCCCCcccccC--
Q psy2470 541 HVYRKN---FMYNR-LFIH--FCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCYDTKLIGITEPRRISVT-- 612 (858)
Q Consensus 541 ~~~rL~---~~~~~-l~~~--~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~l-- 612 (858)
++|-+. ..|.. |... ...=. -..++||..-.+.+++...-+++- .+.+.- +.. ...++.-.
T Consensus 545 kVyllvepg~~Y~~~m~~TEdevA~k---LL~s~~e~V~vey~ee~e~e~vLA---~~~v~~---s~~--~i~~v~~~~~ 613 (830)
T COG1202 545 KVYLLVEPGKKYHASMEETEDEVAFK---LLESEPEPVIVEYDEEDEEENVLA---SAGVTN---SLS--VIERVNSLML 613 (830)
T ss_pred eEEEEecCChhhcccccccHHHHHHH---HhcCCCCcceeccCcHHHHHHHHH---HhhhcC---cHH--HHhhcChhhc
Confidence 999887 44422 2110 00000 122337777777764444443331 111000 000 00111100
Q ss_pred --CchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccc
Q psy2470 613 --SLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 613 --~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
......++..|+++|++ + .+++..+.| +.|+.++.--+.|..+..
T Consensus 614 g~~~~~~k~l~~Lee~g~i-----~-~~G~~v~~T-----~yGrava~~Fl~p~~a~~ 660 (830)
T COG1202 614 GAAFDPKKALSKLEEYGMI-----K-KKGNIVRPT-----PYGRAVAMSFLGPSEAEF 660 (830)
T ss_pred cccCCHHHHHHHHHhcCCe-----e-ccCCEeeec-----cccceeEEeecCchHHHH
Confidence 01455678899999999 4 344434467 999999988888887776
|
|
| >TIGR00963 secA preprotein translocase, SecA subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.9e-22 Score=232.77 Aligned_cols=114 Identities=24% Similarity=0.193 Sum_probs=99.3
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+.++.+...+.. +.++||||++.++++.+++.|.+. |++...|||+ |.+|...+..|..+.-.|+||||
T Consensus 393 ai~~~i~~~~~~--grpvLV~t~si~~se~ls~~L~~~-------gi~~~~Lna~--q~~rEa~ii~~ag~~g~VtIATn 461 (745)
T TIGR00963 393 AVVDEIKERHAK--GQPVLVGTTSVEKSELLSNLLKER-------GIPHNVLNAK--NHEREAEIIAQAGRKGAVTIATN 461 (745)
T ss_pred HHHHHHHHHHhc--CCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEEeeCC--hHHHHHHHHHhcCCCceEEEEec
Confidence 344444444433 678999999999999999999987 8889999998 88999999999999999999999
Q ss_pred cccccCCCCC-------eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 IAETSITIPG-------IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 vAergldIp~-------V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+||+||+. ..|||+ |+ .|.|...+.||.|||||.|. |.+..+.
T Consensus 462 mAgRGtDI~l~~V~~~GGl~VI~--------t~----------~p~s~ri~~q~~GRtGRqG~~G~s~~~l 514 (745)
T TIGR00963 462 MAGRGTDIKLEEVKELGGLYVIG--------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFFL 514 (745)
T ss_pred cccCCcCCCccchhhcCCcEEEe--------cC----------CCCcHHHHHHHhccccCCCCCcceEEEE
Confidence 9999999998 559999 55 68889999999999999997 9988777
|
The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus. |
| >PHA02558 uvsW UvsW helicase; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.4e-21 Score=224.91 Aligned_cols=244 Identities=10% Similarity=0.033 Sum_probs=155.2
Q ss_pred CEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCccccCCCccCCCcccEE------E
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------L 321 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R 321 (858)
++||++||++|+.|..+++.+..... ...+++++ .+. ......+|+|+|++++.+.. ...++++.++ +
T Consensus 160 ~vLilvpt~eL~~Q~~~~l~~~~~~~-~~~~~~i~---~g~-~~~~~~~I~VaT~qsl~~~~-~~~~~~~~~iIvDEaH~ 233 (501)
T PHA02558 160 KVLIIVPTTSLVTQMIDDFVDYRLFP-REAMHKIY---SGT-AKDTDAPIVVSTWQSAVKQP-KEWFDQFGMVIVDECHL 233 (501)
T ss_pred eEEEEECcHHHHHHHHHHHHHhcccc-ccceeEEe---cCc-ccCCCCCEEEeeHHHHhhch-hhhccccCEEEEEchhc
Confidence 58999999999999999885433222 12211121 111 11134789999999998722 2245666665 4
Q ss_pred ecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC-HH--H--HHHHhhcccCCCCcEEEec-------Ceecce
Q psy2470 322 SILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD-AE--E--ICQFYNISASSNATILSVK-------GHLYPV 389 (858)
Q Consensus 322 ~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~-~~--~--~~~~~~~~~~~~~~~i~v~-------g~~~~v 389 (858)
+.. .. +...+. ..++..+++.||||+. .. . +..+|+ +....+. |...++
T Consensus 234 ~~~----~~----~~~il~-----~~~~~~~~lGLTATp~~~~~~~~~~~~~fG------~i~~~v~~~~li~~g~l~~~ 294 (501)
T PHA02558 234 FTG----KS----LTSIIT-----KLDNCKFKFGLTGSLRDGKANILQYVGLFG------DIFKPVTTSQLMEEGQVTDL 294 (501)
T ss_pred ccc----hh----HHHHHH-----hhhccceEEEEeccCCCccccHHHHHHhhC------CceEEecHHHHHhCCCcCCc
Confidence 443 22 222222 2334578999999993 11 1 233444 1111111 111111
Q ss_pred eEE--EecCC--------ccchH---------HHHHHHHHHHHh--hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCc
Q psy2470 390 SVY--YSNDP--------VVNYV---------QGVVDTAIKIHE--SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDL 448 (858)
Q Consensus 390 ~~~--~~~~~--------~~~~~---------~~~~~~l~~i~~--~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~ 448 (858)
++. +...+ ..+|. +.....+.++.. ....+++|||+...+.++.+++.|++.
T Consensus 295 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~------- 367 (501)
T PHA02558 295 KINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTKRNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKV------- 367 (501)
T ss_pred eEEEEeccCCHHHhhhhcccchHHHHHHHhccHHHHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHc-------
Confidence 111 11000 00110 011112222211 123567999999999999999999976
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec-CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhH
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT-NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASA 527 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT-dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~ 527 (858)
+..+..+||++++++|.++++.|++|+.+||||| +++++|+|+|++++||. ++ .+-|+..|
T Consensus 368 g~~v~~i~G~~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl--------~~----------p~~s~~~~ 429 (501)
T PHA02558 368 YDKVYYVSGEVDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIF--------AH----------PSKSKIIV 429 (501)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEE--------ec----------CCcchhhh
Confidence 7889999999999999999999999999999998 99999999999999998 44 34567889
Q ss_pred HHhhcccCCCCCce
Q psy2470 528 VQRAGRAGRVRSGH 541 (858)
Q Consensus 528 ~qR~GRaGR~g~G~ 541 (858)
.||+||+||.++|+
T Consensus 430 ~QriGR~~R~~~~K 443 (501)
T PHA02558 430 LQSIGRVLRKHGSK 443 (501)
T ss_pred hhhhhccccCCCCC
Confidence 99999999998865
|
|
| >TIGR01054 rgy reverse gyrase | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.4e-22 Score=247.45 Aligned_cols=259 Identities=13% Similarity=0.077 Sum_probs=155.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++|+|||||| . |.+|...+.. . ...+++|++|||+||.|+++++.+. ....|.....+|+..
T Consensus 98 i~ApTGsGKT-----~-f~l~~~~~l~------~-----~g~~vLIL~PTreLa~Qi~~~l~~l-~~~~~i~~~~i~~~~ 159 (1171)
T TIGR01054 98 IIAPTGVGKT-----T-FGLAMSLFLA------K-----KGKRCYIILPTTLLVIQVAEKISSL-AEKAGVGTVNIGAYH 159 (1171)
T ss_pred EECCCCCCHH-----H-HHHHHHHHHH------h-----cCCeEEEEeCHHHHHHHHHHHHHHH-HHhcCCceeeeeeec
Confidence 5699999999 2 3344333211 1 1235899999999999998877432 222222111122111
Q ss_pred ecc---c-------eeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhh---hhHHHH----HHH
Q psy2470 286 RKG---R-------MKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVI---GEDMKA----FAE 341 (858)
Q Consensus 286 r~~---~-------~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~l---l~~lk~----~~~ 341 (858)
++. . .....++|+|+|||+|.+ ... ... ++.++ ++++..-+.|-+ +||..+ +.+
T Consensus 160 Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~-l~~-~~~~iVvDEaD~~L~~~k~vd~il~llGF~~e~i~~il~ 237 (1171)
T TIGR01054 160 SRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE-LGP-KFDFIFVDDVDALLKASKNVDKLLKLLGFSEELIEKAWK 237 (1171)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH-hcC-CCCEEEEeChHhhhhccccHHHHHHHcCCCHHHHHHHHH
Confidence 111 1 112348999999999998 322 111 44444 565511111111 233221 110
Q ss_pred Hh------------------cccCCCCce--EEEEecccCHHHHH-HHhhcccCCCCcEEEecCee---cceeEEEecCC
Q psy2470 342 QL------------------KPLKRTQLK--LIISSATVDAEEIC-QFYNISASSNATILSVKGHL---YPVSVYYSNDP 397 (858)
Q Consensus 342 ~l------------------~~~~~~~~q--~il~SAT~~~~~~~-~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~ 397 (858)
.+ ....+++.| +++||||....... .+|. +.-.+.+.... ..+.+.|....
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r-----~ll~~~v~~~~~~~r~I~~~~~~~~ 312 (1171)
T TIGR01054 238 LIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFR-----ELLGFEVGGGSDTLRNVVDVYVEDE 312 (1171)
T ss_pred HhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcc-----cccceEecCccccccceEEEEEecc
Confidence 00 011234445 67799995222222 2333 22223443222 24555554322
Q ss_pred ccchHHHHHHHHHHHHhhCCCCCEEEEcCCH---HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC
Q psy2470 398 VVNYVQGVVDTAIKIHESMPVGDILAFVIGL---EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 398 ~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~---~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g 474 (858)
. .. ..+.+++... .+.+|||++++ +.++.+++.|++. |+.+..+||++++ ++++.|++|
T Consensus 313 ~--~~----~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~-------g~~a~~lhg~~~~----~~l~~Fr~G 374 (1171)
T TIGR01054 313 D--LK----ETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENH-------GVKAVAYHATKPK----EDYEKFAEG 374 (1171)
T ss_pred c--HH----HHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhC-------CceEEEEeCCCCH----HHHHHHHcC
Confidence 1 11 2334444443 35689999999 9999999999977 8999999999974 688999999
Q ss_pred cEEEEEe----cCcccccCCCCC-eeEEEcCCCcccee
Q psy2470 475 MRKIVIA----TNIAETSITIPG-IVYVIDPGFVKARW 507 (858)
Q Consensus 475 ~~kVlvA----TdvAergldIp~-V~~VId~g~~k~~~ 507 (858)
+.+|||| ||+|+||||||+ |+||||+|+|+.+.
T Consensus 375 ~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P~~~~ 412 (1171)
T TIGR01054 375 EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVPKFKV 412 (1171)
T ss_pred CCCEEEEeccccCcccccCCCCccccEEEEECCCCEEE
Confidence 9999999 599999999999 89999999998754
|
Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA. |
| >PRK14701 reverse gyrase; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.8e-21 Score=247.73 Aligned_cols=292 Identities=14% Similarity=0.029 Sum_probs=173.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC--ccEeeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM--DFEYISRG 282 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~--g~~~~~vG 282 (858)
-++|+||||||+ ..+++... . .. ...+++|++|||+|+.|+++++.+ ++... +.. +.
T Consensus 98 li~APTGsGKTl-----~~~~~al~-~------~~-----~g~~aLVl~PTreLa~Qi~~~l~~-l~~~~~~~v~---v~ 156 (1638)
T PRK14701 98 SIVAPTGMGKST-----FGAFIALF-L------AL-----KGKKCYIILPTTLLVKQTVEKIES-FCEKANLDVR---LV 156 (1638)
T ss_pred EEEEcCCCCHHH-----HHHHHHHH-H------Hh-----cCCeEEEEECHHHHHHHHHHHHHH-HHhhcCCcee---EE
Confidence 357999999992 11222111 1 01 113589999999999999887743 33222 222 22
Q ss_pred EEEeccce----------eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCch-hh--hhHHHHHHH--
Q psy2470 283 YMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQD-VI--GEDMKAFAE-- 341 (858)
Q Consensus 283 ~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d-~l--l~~lk~~~~-- 341 (858)
+..+..+. .....+|+|+|||+|.+...+....+++++ ++++.+-.-| .+ +||..++.+
T Consensus 157 ~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l~~~~i~~iVVDEAD~ml~~~knid~~L~llGF~~e~~~~~ 236 (1638)
T PRK14701 157 YYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEMKHLKFDFIFVDDVDAFLKASKNIDRSLQLLGFYEEIIEKA 236 (1638)
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHHhhCCCCEEEEECceeccccccccchhhhcCCChHHHHHHH
Confidence 22211111 112479999999999882222111334444 4443000001 01 233333321
Q ss_pred --Hhc---------------------ccCCCCce-EEEEecccCHH-HHHHHhhcccCCCCcEEEecCee---cceeEEE
Q psy2470 342 --QLK---------------------PLKRTQLK-LIISSATVDAE-EICQFYNISASSNATILSVKGHL---YPVSVYY 393 (858)
Q Consensus 342 --~l~---------------------~~~~~~~q-~il~SAT~~~~-~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~ 393 (858)
++. ...++..| +++||||+... ....+|. ++-.+.+.... ..+.+.|
T Consensus 237 ~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~~-----~~l~f~v~~~~~~lr~i~~~y 311 (1638)
T PRK14701 237 WKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLYR-----ELLGFEVGSGRSALRNIVDVY 311 (1638)
T ss_pred HHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHhh-----cCeEEEecCCCCCCCCcEEEE
Confidence 111 01234455 67799999643 3445554 34445554332 2344555
Q ss_pred ecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHH---HHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC
Q psy2470 394 SNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQI---EHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP 470 (858)
Q Consensus 394 ~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i---~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~ 470 (858)
......+ + ..+..++... ...+||||++++.+ +.+++.|++. |+.+.++||+ |.++++.
T Consensus 312 i~~~~~~----k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~-------Gi~a~~~h~~-----R~~~l~~ 373 (1638)
T PRK14701 312 LNPEKII----K-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLED-------GFKIELVSAK-----NKKGFDL 373 (1638)
T ss_pred EECCHHH----H-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHC-------CCeEEEecch-----HHHHHHH
Confidence 4322111 1 2344454444 35789999998764 8899999977 9999999995 8899999
Q ss_pred CCCCcEEEEEec----CcccccCCCCC-eeEEEcCCCccce---e-ccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c
Q psy2470 471 TPRAMRKIVIAT----NIAETSITIPG-IVYVIDPGFVKAR---W-FNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G 540 (858)
Q Consensus 471 f~~g~~kVlvAT----dvAergldIp~-V~~VId~g~~k~~---~-yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G 540 (858)
|++|+.+||||| |+|+||||+|+ |+|||++|+||.+ . |.+.... + .. .....++.|||||.|. +
T Consensus 374 F~~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~~~~--~---~~-~~~~~~~~~~a~~~g~~~ 447 (1638)
T PRK14701 374 FEEGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPTIYR--I---LG-LLSEILKIEEELKEGIPI 447 (1638)
T ss_pred HHcCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccchhh--h---hc-chHHHHHhhhhcccCCcc
Confidence 999999999999 69999999999 9999999999943 2 3322211 0 01 2345677899999885 6
Q ss_pred eEEEeh
Q psy2470 541 HVYRKN 546 (858)
Q Consensus 541 ~~~rL~ 546 (858)
.|+..+
T Consensus 448 ~~~~~~ 453 (1638)
T PRK14701 448 EGVLDV 453 (1638)
T ss_pred hhHHHh
Confidence 665433
|
|
| >COG1201 Lhr Lhr-like helicases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.1e-21 Score=226.58 Aligned_cols=291 Identities=19% Similarity=0.162 Sum_probs=195.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH---HHHhCCcCccEeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF---LTEMGCRMDFEYISR 281 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v---~~e~g~~~g~~~~~v 281 (858)
-++|||||||| .|-.+|.+--.+.- + .|.......+|=++|.|.|+..+-.++ ++++|..+... -
T Consensus 41 LiiAPTGsGKT-----eAAfLpil~~l~~~-~---~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~G~~v~vR---h 108 (814)
T COG1201 41 LIIAPTGSGKT-----EAAFLPVINELLSL-G---KGKLEDGIYALYISPLKALNNDIRRRLEEPLRELGIEVAVR---H 108 (814)
T ss_pred EEEcCCCCChH-----HHHHHHHHHHHHhc-c---CCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHcCCcccee---c
Confidence 36799999999 44444433322211 0 111122345788999999998886665 35556555433 2
Q ss_pred eEEEeccce--eecceeEEEeecCccccCCCcc----CCCcccEE------------EecCCCCCchhhhhHHHHHHHHh
Q psy2470 282 GYMFRKGRM--KILVSKIFKMSQGKPSDSGVEP----ISQSYLVE------------LSILAPGGQDVIGEDMKAFAEQL 343 (858)
Q Consensus 282 G~~vr~~~~--~~~~t~I~v~TpGrLl~~~~~~----~L~~~~vl------------R~l~~~~~~d~ll~~lk~~~~~l 343 (858)
|-..+.+++ ..+-++|++.||+-|.-++..+ .|.++.++ |... ..+++.+- .
T Consensus 109 GDT~~~er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~------Lsl~LeRL-~--- 178 (814)
T COG1201 109 GDTPQSEKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQ------LALSLERL-R--- 178 (814)
T ss_pred CCCChHHhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchh------hhhhHHHH-H---
Confidence 322222222 2245899999999887644432 34444444 4433 22332222 2
Q ss_pred cccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCe-ecceeEEEecCCcc---chHHHHHHHHHHHHhhCCC
Q psy2470 344 KPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGH-LYPVSVYYSNDPVV---NYVQGVVDTAIKIHESMPV 418 (858)
Q Consensus 344 ~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~-~~~v~~~~~~~~~~---~~~~~~~~~l~~i~~~~~~ 418 (858)
.... +.|.|..|||. +.+..++|+..... .+.++.+.+. ...+++........ .........+.++.+++
T Consensus 179 -~l~~-~~qRIGLSATV~~~~~varfL~g~~~-~~~Iv~~~~~k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~-- 253 (814)
T COG1201 179 -ELAG-DFQRIGLSATVGPPEEVAKFLVGFGD-PCEIVDVSAAKKLEIKVISPVEDLIYDEELWAALYERIAELVKKH-- 253 (814)
T ss_pred -hhCc-ccEEEeehhccCCHHHHHHHhcCCCC-ceEEEEcccCCcceEEEEecCCccccccchhHHHHHHHHHHHhhc--
Confidence 1223 89999999999 88999999874210 2455555543 33344443332211 12234556666666654
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
..+|||+||+..+|.++..|++.. +..+...||+++.++|..+.++|++|..|++|||.-.|-||||.+|+.||
T Consensus 254 ~ttLIF~NTR~~aE~l~~~L~~~~------~~~i~~HHgSlSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVI 327 (814)
T COG1201 254 RTTLIFTNTRSGAERLAFRLKKLG------PDIIEVHHGSLSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVI 327 (814)
T ss_pred CcEEEEEeChHHHHHHHHHHHHhc------CCceeeecccccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEE
Confidence 479999999999999999999762 37788999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~ 546 (858)
. |. .|-|.+...||+||+|+.- +|..|...
T Consensus 328 q--------~~----------SP~sV~r~lQRiGRsgHr~~~~Skg~ii~~~ 361 (814)
T COG1201 328 Q--------LG----------SPKSVNRFLQRIGRAGHRLGEVSKGIIIAED 361 (814)
T ss_pred E--------eC----------CcHHHHHHhHhccccccccCCcccEEEEecC
Confidence 9 55 6788889999999999742 37777654
|
|
| >PRK13766 Hef nuclease; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-19 Score=222.92 Aligned_cols=106 Identities=25% Similarity=0.396 Sum_probs=97.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC--------CCHHHHHHhcCCCCCCcEEEEEecCcccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS--------LPNNEQIKVFRPTPRAMRKIVIATNIAET 487 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~--------l~q~~r~~v~~~f~~g~~kVlvATdvAer 487 (858)
.+.+++|||+++++.++.+++.|... ++.+..+||. +++.+|.++++.|++|..+|||||+++++
T Consensus 363 ~~~~kvlIF~~~~~t~~~L~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~e 435 (773)
T PRK13766 363 NPDSRIIVFTQYRDTAEKIVDLLEKE-------GIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEE 435 (773)
T ss_pred CCCCeEEEEeCcHHHHHHHHHHHHhC-------CCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhc
Confidence 45789999999999999999999765 6777788875 99999999999999999999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++++||+ || .|.+...|+||+||+||.|+|.+|.|+
T Consensus 436 Gldi~~~~~VI~--------yd----------~~~s~~r~iQR~GR~gR~~~~~v~~l~ 476 (773)
T PRK13766 436 GLDIPSVDLVIF--------YE----------PVPSEIRSIQRKGRTGRQEEGRVVVLI 476 (773)
T ss_pred CCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccCcCCCCEEEEEE
Confidence 999999999999 88 456788899999999999999999988
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-19 Score=218.36 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=170.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
.-+.|+||||||.+++.++.. .+ .. | .++|++.||++++.|+++++.+.+|.++....++.+.
T Consensus 165 ~Ll~~~TGSGKT~v~l~~i~~---------~l---~~--g---~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~ 227 (679)
T PRK05580 165 FLLDGVTGSGKTEVYLQAIAE---------VL---AQ--G---KQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSD 227 (679)
T ss_pred EEEECCCCChHHHHHHHHHHH---------HH---Hc--C---CeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCH
Confidence 445699999999444322111 11 11 1 3589999999999999999988787665544222221
Q ss_pred EEecc---ceeecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKG---RMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~---~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
..+.+ ......++|+|+|++.+..-..+. ++-|| -+... .+...--.+++.... ....+.|+++
T Consensus 228 ~~r~~~~~~~~~g~~~IVVgTrsal~~p~~~l---~liVvDEeh~~s~~~---~~~p~y~~r~va~~r--a~~~~~~~il 299 (679)
T PRK05580 228 GERLDEWRKAKRGEAKVVIGARSALFLPFKNL---GLIIVDEEHDSSYKQ---QEGPRYHARDLAVVR--AKLENIPVVL 299 (679)
T ss_pred HHHHHHHHHHHcCCCCEEEeccHHhcccccCC---CEEEEECCCcccccc---CcCCCCcHHHHHHHH--hhccCCCEEE
Confidence 11111 111234799999999886421211 12222 11110 000000012221000 2346789999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCee----cc-eeEEEecCCcc-----chHHHHHHHHHHHHhhCCCCCEEEEc
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHL----YP-VSVYYSNDPVV-----NYVQGVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~----~~-v~~~~~~~~~~-----~~~~~~~~~l~~i~~~~~~g~iLVFl 425 (858)
+|||.+.+.+...... ....+..+.+. .| +++.-...... ..-....+.+.+.+. ...++|||+
T Consensus 300 ~SATps~~s~~~~~~g----~~~~~~l~~r~~~~~~p~v~~id~~~~~~~~~~~~ls~~l~~~i~~~l~--~g~qvll~~ 373 (679)
T PRK05580 300 GSATPSLESLANAQQG----RYRLLRLTKRAGGARLPEVEIIDMRELLRGENGSFLSPPLLEAIKQRLE--RGEQVLLFL 373 (679)
T ss_pred EcCCCCHHHHHHHhcc----ceeEEEeccccccCCCCeEEEEechhhhhhcccCCCCHHHHHHHHHHHH--cCCeEEEEE
Confidence 9999988776554321 22333333221 11 22211111000 011222333333322 245899998
Q ss_pred CCH------------------------------------------------------------HHHHHHHHHHHHhccCC
Q psy2470 426 IGL------------------------------------------------------------EQIEHIIGILKQYHNQR 445 (858)
Q Consensus 426 ~t~------------------------------------------------------------~~i~~l~~~L~~~~~~~ 445 (858)
|.+ ..++++++.|++.
T Consensus 374 nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~---- 449 (679)
T PRK05580 374 NRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPVGPGTERLEEELAEL---- 449 (679)
T ss_pred cCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEeeccHHHHHHHHHHh----
Confidence 752 1455666666654
Q ss_pred CCcceEEEeccCCCCH--HHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeee
Q psy2470 446 EDLKLLILPMHGSLPN--NEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVP 521 (858)
Q Consensus 446 ~~~~~~v~~LHg~l~q--~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~p 521 (858)
.|+..+..+||++.+ +++.++++.|++|+..|||+|+++++|+|+|+|++|+ | .|.......+.-.-
T Consensus 450 -fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~iakG~d~p~v~lV~il~--------aD~~l~~pdfra~E 520 (679)
T PRK05580 450 -FPEARILRIDRDTTRRKGALEQLLAQFARGEADILIGTQMLAKGHDFPNVTLVGVLD--------ADLGLFSPDFRASE 520 (679)
T ss_pred -CCCCcEEEEeccccccchhHHHHHHHHhcCCCCEEEEChhhccCCCCCCcCEEEEEc--------CchhccCCccchHH
Confidence 257889999999975 5789999999999999999999999999999999995 6 33222221111111
Q ss_pred cCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 522 ISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 522 is~~~~~qR~GRaGR~g~-G~~~r 544 (858)
..-..+.|++|||||.+. |.|+-
T Consensus 521 r~~~~l~q~~GRagR~~~~g~vii 544 (679)
T PRK05580 521 RTFQLLTQVAGRAGRAEKPGEVLI 544 (679)
T ss_pred HHHHHHHHHHhhccCCCCCCEEEE
Confidence 224678999999999775 99883
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.7e-19 Score=209.37 Aligned_cols=291 Identities=12% Similarity=0.060 Sum_probs=171.2
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR 286 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr 286 (858)
.|+||||||.+++.++.. .+ +. | .++|+++|++.++.|+++++.+.+|.++...+++.+-..+
T Consensus 3 ~g~TGsGKT~v~l~~i~~---------~l---~~--g---~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er 65 (505)
T TIGR00595 3 FGVTGSGKTEVYLQAIEK---------VL---AL--G---KSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEK 65 (505)
T ss_pred cCCCCCCHHHHHHHHHHH---------HH---Hc--C---CeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHH
Confidence 589999999554432211 11 11 1 2589999999999999999987777655433222221111
Q ss_pred cc---ceeecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 287 KG---RMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 287 ~~---~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.+ +......+|+|+|++.+..- +.++..| -+... .+...--.+++...+ ....+.++|++
T Consensus 66 ~~~~~~~~~g~~~IVVGTrsalf~p-----~~~l~lIIVDEeh~~sykq---~~~p~y~ar~~a~~r--a~~~~~~vil~ 135 (505)
T TIGR00595 66 LQAWRKVKNGEILVVIGTRSALFLP-----FKNLGLIIVDEEHDSSYKQ---EEGPRYHARDVAVYR--AKKFNCPVVLG 135 (505)
T ss_pred HHHHHHHHcCCCCEEECChHHHcCc-----ccCCCEEEEECCCcccccc---ccCCCCcHHHHHHHH--HHhcCCCEEEE
Confidence 10 11123478999999987642 2233333 11110 011000011111000 22357899999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCe----ecc-eeEEEecCCc--cchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGH----LYP-VSVYYSNDPV--VNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~----~~~-v~~~~~~~~~--~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
|||.+.+.+...... ....+..+.+ ..| +++.-..... ........+.+.+.+.. .+++|||+|++.
T Consensus 136 SATPsles~~~~~~g----~~~~~~l~~r~~~~~~p~v~vid~~~~~~~~~ls~~l~~~i~~~l~~--g~qvLvflnrrG 209 (505)
T TIGR00595 136 SATPSLESYHNAKQK----AYRLLVLTRRVSGRKPPEVKLIDMRKEPRQSFLSPELITAIEQTLAA--GEQSILFLNRRG 209 (505)
T ss_pred eCCCCHHHHHHHhcC----CeEEeechhhhcCCCCCeEEEEecccccccCCccHHHHHHHHHHHHc--CCcEEEEEeCCc
Confidence 999988776654331 1122222211 111 2221111110 01112333444444332 568999987653
Q ss_pred H------------------------------------------------------------HHHHHHHHHHhccCCCCcc
Q psy2470 430 Q------------------------------------------------------------IEHIIGILKQYHNQREDLK 449 (858)
Q Consensus 430 ~------------------------------------------------------------i~~l~~~L~~~~~~~~~~~ 449 (858)
- ++++.+.|++. .|+
T Consensus 210 ya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~-----fp~ 284 (505)
T TIGR00595 210 YSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKL-----FPG 284 (505)
T ss_pred CCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhh-----CCC
Confidence 2 57777777765 257
Q ss_pred eEEEeccCCCCHHHH--HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeeecCHh
Q psy2470 450 LLILPMHGSLPNNEQ--IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVPISKA 525 (858)
Q Consensus 450 ~~v~~LHg~l~q~~r--~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~ 525 (858)
..+..+|+++++.++ .++++.|++|+.+|||+|+++++|+|+|+|++|+ | +|.......+.-.--.-.
T Consensus 285 ~~v~~~d~d~~~~~~~~~~~l~~f~~g~~~ILVgT~~i~kG~d~~~v~lV~vl~--------aD~~l~~pd~ra~E~~~~ 356 (505)
T TIGR00595 285 ARIARIDSDTTSRKGAHEALLNQFANGKADILIGTQMIAKGHHFPNVTLVGVLD--------ADSGLHSPDFRAAERGFQ 356 (505)
T ss_pred CcEEEEecccccCccHHHHHHHHHhcCCCCEEEeCcccccCCCCCcccEEEEEc--------CcccccCcccchHHHHHH
Confidence 899999999988776 8899999999999999999999999999999885 7 553333222211112345
Q ss_pred hHHHhhcccCCCCC-ceEE
Q psy2470 526 SAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 526 ~~~qR~GRaGR~g~-G~~~ 543 (858)
.+.|++|||||.+. |.++
T Consensus 357 ll~q~~GRagR~~~~g~vi 375 (505)
T TIGR00595 357 LLTQVAGRAGRAEDPGQVI 375 (505)
T ss_pred HHHHHHhccCCCCCCCEEE
Confidence 68999999999876 8888
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-18 Score=187.99 Aligned_cols=108 Identities=24% Similarity=0.355 Sum_probs=90.5
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceE--EEe-----ccCCCCHHHHHHhcCCCCCCcEEEEEecCccccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLL--ILP-----MHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETS 488 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~--v~~-----LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAerg 488 (858)
.+..++|||..-++.++.+.+.|.+... ... .+. --.||+|.+|..++++|++|..+|||||.|+|-|
T Consensus 364 ~~~~RvIVFT~yRdTae~i~~~L~~~~~-----~~~~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEG 438 (542)
T COG1111 364 NGDSRVIVFTEYRDTAEEIVNFLKKIGI-----KARVRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEG 438 (542)
T ss_pred CCCceEEEEehhHhHHHHHHHHHHhcCC-----cceeEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEccccccc
Confidence 3456899999999999999999986521 111 111 1257999999999999999999999999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||||++++||- |+|- -|.--++||.|||||..+|.+|-|.
T Consensus 439 LDIp~vDlVif--------YEpv----------pSeIR~IQR~GRTGR~r~Grv~vLv 478 (542)
T COG1111 439 LDIPEVDLVIF--------YEPV----------PSEIRSIQRKGRTGRKRKGRVVVLV 478 (542)
T ss_pred CCCCcccEEEE--------ecCC----------cHHHHHHHhhCccccCCCCeEEEEE
Confidence 99999999998 8832 3455689999999999999999988
|
|
| >KOG3264|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.3e-19 Score=167.57 Aligned_cols=184 Identities=53% Similarity=0.894 Sum_probs=152.1
Q ss_pred CchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCC-hhHHHHHHHhcCCCCccccchhccc
Q psy2470 131 HPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQT-QPLLLRVRRALDFPDMPYQLRYIGQ 209 (858)
Q Consensus 131 ~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~ 209 (858)
.|..+..++.+||+++.+++++.+|++|+||+.+ |+|++||++|++++++. .+...|+||.++++..|||++
T Consensus 14 ~~~~~mEcvlqGsI~~~~ve~Le~rL~GLCd~~~---E~f~dhEmcfslr~~~~~~~~l~R~~r~ldr~~~~wqlk---- 86 (221)
T KOG3264|consen 14 TPYMSMECVLQGSILDQHVEALEHRLQGLCDNQR---ERFRDHEMCFSLRPNLAVVPSLLRLRRDLDRPEAPWQLK---- 86 (221)
T ss_pred cccccchhheechHhhcchHHHHHHHHhccccch---hhhhhhhheeeecCCcCccHHHHHHHHhccCCCCceEEE----
Confidence 3667788999999999999999999999999976 79999999999999998 589999999999998888888
Q ss_pred cCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc
Q psy2470 210 PEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR 289 (858)
Q Consensus 210 TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~ 289 (858)
|+|+++.| +..+++||+.+...++++.+.+++.++|.++..+|..+|+..++..
T Consensus 87 ------------------------ylG~pe~g--d~~~ptlVRn~id~~~S~n~l~~~~~lG~rlDhEy~akG~lf~kgr 140 (221)
T KOG3264|consen 87 ------------------------YLGGPERG--DDQRPTLVRNCIDSAVSKNALRFLYELGFRLDHEYLAKGFLFRKGR 140 (221)
T ss_pred ------------------------ecCCCCcc--cccccHHHHHHHHHHHhhhHHHHHHHhcccccHHHHhhhhhhcccc
Confidence 88999854 8888999999999999999999999999999999999999999888
Q ss_pred eeecceeEEE-eecCccccCCCccCCCcccEEEecCCCCCch--hhhhHHHHHHHHhcccC
Q psy2470 290 MKILVSKIFK-MSQGKPSDSGVEPISQSYLVELSILAPGGQD--VIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 290 ~~~~~t~I~v-~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d--~ll~~lk~~~~~l~~~~ 347 (858)
.+.......+ --||.--.....+.-.+|.+.-++.+|+++| -.-.-++.+.++|+|..
T Consensus 141 mkI~vs~l~~~~~pg~~d~~s~~pvS~sylvelsV~aPa~~E~~~va~~mr~FaeqL~PLV 201 (221)
T KOG3264|consen 141 MKISVSKLSVIKVPGVHDIDSAEPVSPSYLVELSVVAPAGQENYEVAAAMRSFAEQLKPLV 201 (221)
T ss_pred eEEEEEEEEEeccCcccccccccccCcccEEEEEEecCCccchhhHHHHHHHHHHHhhhhh
Confidence 6554332222 2577544333445555777777888888888 44566777777887654
|
|
| >COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-17 Score=191.15 Aligned_cols=279 Identities=16% Similarity=0.112 Sum_probs=176.4
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHH-HHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVAC-SCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la-~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+=+||.||+ +.|++|.+.. .| .+||++|---|- -|+.. + +..|...... =+...
T Consensus 38 vmPTGgGKS-----lCyQiPAll~---------~G------~TLVVSPLiSLM~DQV~~-l-~~~Gi~A~~l---nS~l~ 92 (590)
T COG0514 38 VMPTGGGKS-----LCYQIPALLL---------EG------LTLVVSPLISLMKDQVDQ-L-EAAGIRAAYL---NSTLS 92 (590)
T ss_pred EccCCCCcc-----hHhhhHHHhc---------CC------CEEEECchHHHHHHHHHH-H-HHcCceeehh---hcccC
Confidence 458999999 8899997773 22 479999966554 34422 2 4445432211 00011
Q ss_pred eccce------eecceeEEEeecCcccc--CCCccCCC--cccEE---EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD--SGVEPISQ--SYLVE---LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~--~~~~~~L~--~~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.+.. .....+|+|.+|-||.. ...-..-. ...+| ..+. .-|-||-....+. . .+.... ++..
T Consensus 93 ~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiS-qWGhdFRP~Y~~l-g-~l~~~~-~~~p 168 (590)
T COG0514 93 REERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCIS-QWGHDFRPDYRRL-G-RLRAGL-PNPP 168 (590)
T ss_pred HHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHh-hcCCccCHhHHHH-H-HHHhhC-CCCC
Confidence 11111 11236899999999987 21111111 22233 1111 0113444333221 1 111122 3678
Q ss_pred EEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
++.++||-+.. .+.+.+.. +.+.+.+.+-.. -.++|......+- ......+.. ......+..||||.|+.
T Consensus 169 ~~AlTATA~~~v~~DI~~~L~l----~~~~~~~~sfdR-pNi~~~v~~~~~~-~~q~~fi~~-~~~~~~~~GIIYc~sRk 241 (590)
T COG0514 169 VLALTATATPRVRDDIREQLGL----QDANIFRGSFDR-PNLALKVVEKGEP-SDQLAFLAT-VLPQLSKSGIIYCLTRK 241 (590)
T ss_pred EEEEeCCCChHHHHHHHHHhcC----CCcceEEecCCC-chhhhhhhhcccH-HHHHHHHHh-hccccCCCeEEEEeeHH
Confidence 89999998543 34444442 222222221110 1112221111111 111112222 12445677899999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|+.. |+.+..+||||+.++|..+.+.|-++..+|+|||+--..|||-|||++||+ ||
T Consensus 242 ~~E~ia~~L~~~-------g~~a~~YHaGl~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH--------~~ 306 (590)
T COG0514 242 KVEELAEWLRKN-------GISAGAYHAGLSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIH--------YD 306 (590)
T ss_pred hHHHHHHHHHHC-------CCceEEecCCCCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEE--------ec
Confidence 999999999987 899999999999999999999999999999999999999999999999999 77
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|-|.++|.|=+|||||-|. ..|+-||
T Consensus 307 ----------lP~s~EsYyQE~GRAGRDG~~a~aill~ 334 (590)
T COG0514 307 ----------LPGSIESYYQETGRAGRDGLPAEAILLY 334 (590)
T ss_pred ----------CCCCHHHHHHHHhhccCCCCcceEEEee
Confidence 78999999999999999997 9999999
|
|
| >PRK13104 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.4e-17 Score=196.11 Aligned_cols=80 Identities=16% Similarity=0.201 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
..+.++.+...|.. +.++|||++|.+..+.+++.|.+. +++...|||.+.+.++..+.++|++|. |+||
T Consensus 430 ~~av~~~i~~~~~~--g~PVLVgt~Sie~sE~ls~~L~~~-------gi~h~vLnak~~q~Ea~iia~Ag~~G~--VtIA 498 (896)
T PRK13104 430 FQAIIEDVRECGVR--KQPVLVGTVSIEASEFLSQLLKKE-------NIKHQVLNAKFHEKEAQIIAEAGRPGA--VTIA 498 (896)
T ss_pred HHHHHHHHHHHHhC--CCCEEEEeCcHHHHHHHHHHHHHc-------CCCeEeecCCCChHHHHHHHhCCCCCc--EEEe
Confidence 34455555555543 678999999999999999999987 899999999999999999999999994 9999
Q ss_pred cCcccccCCCC
Q psy2470 482 TNIAETSITIP 492 (858)
Q Consensus 482 TdvAergldIp 492 (858)
||+|+||+||.
T Consensus 499 TNmAGRGtDI~ 509 (896)
T PRK13104 499 TNMAGRGTDIV 509 (896)
T ss_pred ccCccCCccee
Confidence 99999999986
|
|
| >PRK09694 helicase Cas3; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-17 Score=198.06 Aligned_cols=98 Identities=19% Similarity=0.280 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH----HHhcCCC-CCCcE---EEEEecCccccc
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ----IKVFRPT-PRAMR---KIVIATNIAETS 488 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r----~~v~~~f-~~g~~---kVlvATdvAerg 488 (858)
..+++|||+||.++++.+++.|++.. .++..+..+||.+++.+| .++++.| ++|++ +|||||+|+|+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~----~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~G 634 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELN----NTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQS 634 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhC----CCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhhe
Confidence 46789999999999999999998641 124679999999999999 4567778 66764 799999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
||| ++++||. +. .| .+.++||+||+||.+.
T Consensus 635 LDI-d~DvlIt--------dl----------aP--idsLiQRaGR~~R~~~ 664 (878)
T PRK09694 635 LDL-DFDWLIT--------QL----------CP--VDLLFQRLGRLHRHHR 664 (878)
T ss_pred eec-CCCeEEE--------CC----------CC--HHHHHHHHhccCCCCC
Confidence 999 6898887 22 34 5799999999999863
|
|
| >COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.7e-17 Score=200.22 Aligned_cols=328 Identities=18% Similarity=0.102 Sum_probs=201.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG 282 (858)
+-++..|||||| .+|.+|.+-..++ ++..++|++-||..||..=++++.+.....- +.. ++
T Consensus 88 vvVtTgTgSGKT-----e~FllPIld~~l~----------~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v~---~~ 149 (851)
T COG1205 88 VVVTTGTGSGKT-----ESFLLPILDHLLR----------DPSARALLLYPTNALANDQAERLRELISDLPGKVT---FG 149 (851)
T ss_pred EEEECCCCCchh-----HHHHHHHHHHHhh----------CcCccEEEEechhhhHhhHHHHHHHHHHhCCCcce---ee
Confidence 346799999999 8888885553222 2223689999999999766676654432111 111 11
Q ss_pred -E--EEeccce---eecceeEEEeecCcccc-CCCc-c----CCC--cccEE------EecCCCCCchhhhhHHHHHHHH
Q psy2470 283 -Y--MFRKGRM---KILVSKIFKMSQGKPSD-SGVE-P----ISQ--SYLVE------LSILAPGGQDVIGEDMKAFAEQ 342 (858)
Q Consensus 283 -~--~vr~~~~---~~~~t~I~v~TpGrLl~-~~~~-~----~L~--~~~vl------R~l~~~~~~d~ll~~lk~~~~~ 342 (858)
| ....+.. ....++|++.||-+|-. ++.. . .++ +|-|+ |... |+++ ..+++.+...
T Consensus 150 ~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~---GS~v-A~llRRL~~~ 225 (851)
T COG1205 150 RYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQ---GSEV-ALLLRRLLRR 225 (851)
T ss_pred eecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccc---hhHH-HHHHHHHHHH
Confidence 1 1222222 23568999999999876 3322 1 223 44444 6665 3444 4455555533
Q ss_pred hcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEE-ecCeecc--eeEEEecCC---------ccchHHHHHHHH
Q psy2470 343 LKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILS-VKGHLYP--VSVYYSNDP---------VVNYVQGVVDTA 409 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~-v~g~~~~--v~~~~~~~~---------~~~~~~~~~~~l 409 (858)
+ .....+.|+|..|||+ +...++.-+.. ..... +.+...| -..+....+ ..+.. .....+
T Consensus 226 ~-~~~~~~~q~i~~SAT~~np~e~~~~l~~-----~~f~~~v~~~g~~~~~~~~~~~~p~~~~~~~~~r~s~~-~~~~~~ 298 (851)
T COG1205 226 L-RRYGSPLQIICTSATLANPGEFAEELFG-----RDFEVPVDEDGSPRGLRYFVRREPPIRELAESIRRSAL-AELATL 298 (851)
T ss_pred H-hccCCCceEEEEeccccChHHHHHHhcC-----CcceeeccCCCCCCCceEEEEeCCcchhhhhhcccchH-HHHHHH
Confidence 3 2344689999999999 66666654431 22222 3322221 222222222 11111 112222
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc-CCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccccc
Q psy2470 410 IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-QREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETS 488 (858)
Q Consensus 410 ~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAerg 488 (858)
...... ..-+.|||+.+++.++.+....++... ..+.-...+...||++..++|.++...|+.|+.++++|||-+|-|
T Consensus 299 ~~~~~~-~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~~~~~~st~Alelg 377 (851)
T COG1205 299 AALLVR-NGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGELLGVIATNALELG 377 (851)
T ss_pred HHHHHH-cCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCCccEEecchhhhhc
Confidence 222211 245789999999999999744432111 001123568889999999999999999999999999999999999
Q ss_pred CCCCCeeEEEcCCCccceeccCCCCCCcceeeec-CHhhHHHhhcccCCCCC-ceEEEeh------hhHhhhhhhhhccC
Q psy2470 489 ITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPI-SKASAVQRAGRAGRVRS-GHVYRKN------FMYNRLFIHFCVSR 560 (858)
Q Consensus 489 ldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pi-s~~~~~qR~GRaGR~g~-G~~~rL~------~~~~~l~~~~~~~~ 560 (858)
+||-+++.||.+|+ |. |..++.||+|||||.+. +..+-.+ ..|...++++.+ .
T Consensus 378 idiG~ldavi~~g~------------------P~~s~~~~~Q~~GRaGR~~~~~l~~~v~~~~~~d~yy~~~p~~~~~-~ 438 (851)
T COG1205 378 IDIGSLDAVIAYGY------------------PGVSVLSFRQRAGRAGRRGQESLVLVVLRSDPLDSYYLRHPEELLE-T 438 (851)
T ss_pred eeehhhhhHhhcCC------------------CCchHHHHHHhhhhccCCCCCceEEEEeCCCccchhhhhCcHhhhh-c
Confidence 99999999999773 55 78899999999999983 4444433 333344443322 1
Q ss_pred CCCCCCCCCCccccCcccchhhhH
Q psy2470 561 NIPTIPNDPKDVKCDVMFHKVFFS 584 (858)
Q Consensus 561 ~~p~~~~~Pei~r~~L~~~~~l~~ 584 (858)
. .+.+|..+.+..++..+..
T Consensus 439 ---~-~~~~e~~~~~~~n~~~l~~ 458 (851)
T COG1205 439 ---G-FGPVESVRVDDNNEYLLDG 458 (851)
T ss_pred ---c-cCcccccccCCCCcchhhh
Confidence 1 1237777777776666653
|
|
| >TIGR00603 rad25 DNA repair helicase rad25 | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.7e-17 Score=189.72 Aligned_cols=101 Identities=17% Similarity=0.233 Sum_probs=85.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEEEecCcccccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVlvATdvAergldIp~V~ 495 (858)
...++|||+...+.++.+++.|. +..+||++++.+|.++++.|+.| ..++||+|+|+.+|||+|+++
T Consensus 495 ~g~kiLVF~~~~~~l~~~a~~L~------------~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~ 562 (732)
T TIGR00603 495 RGDKIIVFSDNVFALKEYAIKLG------------KPFIYGPTSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEAN 562 (732)
T ss_pred cCCeEEEEeCCHHHHHHHHHHcC------------CceEECCCCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCC
Confidence 46789999999988888877662 23479999999999999999865 889999999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE-------EEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV-------YRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~-------~rL~ 546 (858)
+||+ +++.. -|..+|+||.||++|.++ |.+ |+|.
T Consensus 563 vvI~--------~s~~~---------gS~~q~iQRlGRilR~~~~~~~~~~~A~fY~lV 604 (732)
T TIGR00603 563 VLIQ--------ISSHY---------GSRRQEAQRLGRILRAKKGSDAEEYNAFFYSLV 604 (732)
T ss_pred EEEE--------eCCCC---------CCHHHHHHHhcccccCCCCCccccccceEEEEe
Confidence 9999 66222 378999999999999987 454 6776
|
All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12906 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8.4e-17 Score=190.63 Aligned_cols=103 Identities=22% Similarity=0.234 Sum_probs=94.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCC---CC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI---PG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldI---p~ 493 (858)
.+.++|||+++.+.++.+++.|.+. +++...|||++.+.++..+.+++++|. |+||||+|+||.|| ++
T Consensus 439 ~g~pvLI~t~si~~se~ls~~L~~~-------gi~~~~Lna~~~~~Ea~ii~~ag~~g~--VtIATnmAGRGtDI~l~~~ 509 (796)
T PRK12906 439 KGQPVLVGTVAIESSERLSHLLDEA-------GIPHAVLNAKNHAKEAEIIMNAGQRGA--VTIATNMAGRGTDIKLGPG 509 (796)
T ss_pred CCCCEEEEeCcHHHHHHHHHHHHHC-------CCCeeEecCCcHHHHHHHHHhcCCCce--EEEEeccccCCCCCCCCcc
Confidence 4678999999999999999999987 888999999999999999999998887 99999999999999 49
Q ss_pred ee-----EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 494 IV-----YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 494 V~-----~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|. |||+ |+ .|.|...+.||.|||||.|. |.+..+.
T Consensus 510 V~~~GGLhVI~--------te----------~pes~ri~~Ql~GRtGRqG~~G~s~~~~ 550 (796)
T PRK12906 510 VKELGGLAVIG--------TE----------RHESRRIDNQLRGRSGRQGDPGSSRFYL 550 (796)
T ss_pred hhhhCCcEEEe--------ee----------cCCcHHHHHHHhhhhccCCCCcceEEEE
Confidence 99 9999 55 68889999999999999997 9987766
|
|
| >PRK12904 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.70 E-value=8e-17 Score=191.56 Aligned_cols=67 Identities=19% Similarity=0.180 Sum_probs=62.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
.+.++|||++|.++++.+++.|.+. ++++..|||. |.+|...+..|+.+...|+||||+|+||+||+
T Consensus 429 ~grpVLIft~Si~~se~Ls~~L~~~-------gi~~~vLnak--q~eREa~Iia~Ag~~g~VtIATNmAGRGtDI~ 495 (830)
T PRK12904 429 KGQPVLVGTVSIEKSELLSKLLKKA-------GIPHNVLNAK--NHEREAEIIAQAGRPGAVTIATNMAGRGTDIK 495 (830)
T ss_pred cCCCEEEEeCcHHHHHHHHHHHHHC-------CCceEeccCc--hHHHHHHHHHhcCCCceEEEecccccCCcCcc
Confidence 4668999999999999999999987 8999999995 88999999999999999999999999999987
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.9e-15 Score=173.13 Aligned_cols=310 Identities=15% Similarity=0.117 Sum_probs=193.6
Q ss_pred cccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc
Q psy2470 173 HEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR 252 (858)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl 252 (858)
....|+|...|...+ .....-|..+. |-.=-+.|..|||||++.+.+++.. .+.| -++..+
T Consensus 257 ~~LPF~LT~aQ~~vi-~EI~~Dl~~~~-~M~RLlQGDVGSGKTvVA~laml~a------------i~~G-----~Q~ALM 317 (677)
T COG1200 257 AALPFKLTNAQKRVI-KEILADLASPV-PMNRLLQGDVGSGKTVVALLAMLAA------------IEAG-----YQAALM 317 (677)
T ss_pred HhCCCCccHHHHHHH-HHHHhhhcCch-hhHHHhccCcCCCHHHHHHHHHHHH------------HHcC-----CeeEEe
Confidence 456677777665433 33444443322 3444457999999995554444332 1222 257899
Q ss_pred cchHHHHHHHHHHHHH---HhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCccccCCCccCCCcccEEEec
Q psy2470 253 SSIDVACSCTVVEFLT---EMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSDSGVEPISQSYLVELSI 323 (858)
Q Consensus 253 ~PtR~la~qva~~v~~---e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l 323 (858)
+||.+||.|-+..+.+ .+|.+++.. .|-..+... ..+...+|+|+|.--+-| +..+++...+ .+
T Consensus 318 APTEILA~QH~~~~~~~l~~~~i~V~lL---tG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd---~V~F~~LgLV-Ii 390 (677)
T COG1200 318 APTEILAEQHYESLRKWLEPLGIRVALL---TGSLKGKARKEILEQLASGEIDIVVGTHALIQD---KVEFHNLGLV-II 390 (677)
T ss_pred ccHHHHHHHHHHHHHHHhhhcCCeEEEe---ecccchhHHHHHHHHHhCCCCCEEEEcchhhhc---ceeecceeEE-EE
Confidence 9999999999877654 455565555 442222211 122458999999886644 2233333322 11
Q ss_pred CCCCCchhhhhHHHHHHHHhcccCCC-CceEEEEecccCHHHHHH-HhhcccCCCCcEE-EecCeecceeEEEecCCccc
Q psy2470 324 LAPGGQDVIGEDMKAFAEQLKPLKRT-QLKLIISSATVDAEEICQ-FYNISASSNATIL-SVKGHLYPVSVYYSNDPVVN 400 (858)
Q Consensus 324 ~~~~~~d~ll~~lk~~~~~l~~~~~~-~~q~il~SAT~~~~~~~~-~~~~~~~~~~~~i-~v~g~~~~v~~~~~~~~~~~ 400 (858)
| .-.-.|+..... |. .... ...+++||||.-...++= .|+.- +..+| +.|....|+..+.......+
T Consensus 391 D----EQHRFGV~QR~~--L~-~KG~~~Ph~LvMTATPIPRTLAlt~fgDl---dvS~IdElP~GRkpI~T~~i~~~~~~ 460 (677)
T COG1200 391 D----EQHRFGVHQRLA--LR-EKGEQNPHVLVMTATPIPRTLALTAFGDL---DVSIIDELPPGRKPITTVVIPHERRP 460 (677)
T ss_pred e----ccccccHHHHHH--HH-HhCCCCCcEEEEeCCCchHHHHHHHhccc---cchhhccCCCCCCceEEEEeccccHH
Confidence 2 122244433322 21 1222 457899999996665553 34310 22222 34444468888777654333
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHH--------HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLE--------QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP 472 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~--------~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~ 472 (858)
..++.+..-+. .+.++-|-||=.+ .++.+++.|+.. .+++.+.-+||.|+.++...|++.|+
T Consensus 461 ---~v~e~i~~ei~--~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~-----~~~~~vgL~HGrm~~~eKd~vM~~Fk 530 (677)
T COG1200 461 ---EVYERIREEIA--KGRQAYVVCPLIEESEKLELQAAEELYEELKSF-----LPELKVGLVHGRMKPAEKDAVMEAFK 530 (677)
T ss_pred ---HHHHHHHHHHH--cCCEEEEEeccccccccchhhhHHHHHHHHHHH-----cccceeEEEecCCChHHHHHHHHHHH
Confidence 33344443333 3678888887654 445566666643 35889999999999999999999999
Q ss_pred CCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC-CCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 473 RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP-NTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 473 ~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~-~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|+.+|||||.|.|-|||+|+-++-|= +|+ |-|. ++.-|=.||.||.+. +.|+-+|
T Consensus 531 ~~e~~ILVaTTVIEVGVdVPnATvMVI--------e~AERFGL----------aQLHQLRGRVGRG~~qSyC~Ll~ 588 (677)
T COG1200 531 EGEIDILVATTVIEVGVDVPNATVMVI--------ENAERFGL----------AQLHQLRGRVGRGDLQSYCVLLY 588 (677)
T ss_pred cCCCcEEEEeeEEEecccCCCCeEEEE--------echhhhhH----------HHHHHhccccCCCCcceEEEEEe
Confidence 999999999999999999999997663 332 3454 445589999999876 9999998
|
|
| >KOG0354|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-15 Score=174.44 Aligned_cols=113 Identities=23% Similarity=0.255 Sum_probs=90.7
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc----CCCCHHHHHHhcCCCCCCcEEEEEecCcccccCC
Q psy2470 415 SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH----GSLPNNEQIKVFRPTPRAMRKIVIATNIAETSIT 490 (858)
Q Consensus 415 ~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH----g~l~q~~r~~v~~~f~~g~~kVlvATdvAergld 490 (858)
..+..++|||+.+++.++.+.+.|.+.....-.+.+-+..=+ .+|+|.+|..++++|++|..+|||||.|||=|||
T Consensus 410 ~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLD 489 (746)
T KOG0354|consen 410 QNPDSRTIIFVETRESALALKKWLLQLHELGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLD 489 (746)
T ss_pred cCCCccEEEEEehHHHHHHHHHHHHhhhhcccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCC
Confidence 345678999999999999999999853222101122222111 4899999999999999999999999999999999
Q ss_pred CCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 491 IPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 491 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+.++.||- ||.. .+.-..+||.|| ||+..|.|+-|+
T Consensus 490 I~ec~lVIc--------Yd~~----------snpIrmIQrrGR-gRa~ns~~vll~ 526 (746)
T KOG0354|consen 490 IGECNLVIC--------YDYS----------SNPIRMVQRRGR-GRARNSKCVLLT 526 (746)
T ss_pred cccccEEEE--------ecCC----------ccHHHHHHHhcc-ccccCCeEEEEE
Confidence 999999999 7733 345568899999 999999999998
|
|
| >PRK13107 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-15 Score=177.17 Aligned_cols=81 Identities=19% Similarity=0.186 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
+..+.++.+..++.. +.+||||+++.+..+.+++.|.+. ++....|||..++.++..+.+.|++|. |+|
T Consensus 434 K~~Aii~ei~~~~~~--GrpVLV~t~sv~~se~ls~~L~~~-------gi~~~vLnak~~~~Ea~ii~~Ag~~G~--VtI 502 (908)
T PRK13107 434 KYQAIIKDIKDCRER--GQPVLVGTVSIEQSELLARLMVKE-------KIPHEVLNAKFHEREAEIVAQAGRTGA--VTI 502 (908)
T ss_pred HHHHHHHHHHHHHHc--CCCEEEEeCcHHHHHHHHHHHHHC-------CCCeEeccCcccHHHHHHHHhCCCCCc--EEE
Confidence 344555666666654 568999999999999999999987 889999999999999999999999998 999
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||+|+||.||.
T Consensus 503 ATnmAGRGTDIk 514 (908)
T PRK13107 503 ATNMAGRGTDIV 514 (908)
T ss_pred ecCCcCCCccee
Confidence 999999999986
|
|
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.3e-14 Score=168.51 Aligned_cols=351 Identities=15% Similarity=0.123 Sum_probs=205.6
Q ss_pred CCcccccccchhccCCCC------------hhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccc
Q psy2470 167 PETFHDHEMCFSIRGNQT------------QPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRY 234 (858)
Q Consensus 167 ~~~f~~~e~~~~l~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~ 234 (858)
|..|+..|-...+...+. +++..++.-+--.. .=++...||||+|||.+.+.-+.+--... ++
T Consensus 281 ~~pf~~~Ekl~~iselP~Wnq~aF~g~~sLNrIQS~v~daAl~~--~EnmLlCAPTGaGKTNVAvLtiLqel~~h--~r- 355 (1674)
T KOG0951|consen 281 YFPFHKEEKLVKISELPKWNQPAFFGKQSLNRIQSKVYDAALRG--DENMLLCAPTGAGKTNVAVLTILQELGNH--LR- 355 (1674)
T ss_pred CCCCCccceeEeecCCcchhhhhcccchhhhHHHHHHHHHHhcC--cCcEEEeccCCCCchHHHHHHHHHHHhcc--cc-
Confidence 357777777777666521 22333333322111 23466789999999966665443322111 11
Q ss_pred cCCCCCCCCCCcc-CEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc---eeecceeEEEeecCcccc-CC
Q psy2470 235 IGQPEMGVGDKAR-PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR---MKILVSKIFKMSQGKPSD-SG 309 (858)
Q Consensus 235 l~~~~~g~g~~~~-~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~---~~~~~t~I~v~TpGrLl~-~~ 309 (858)
+.|+-.-.. .+.=+.|...|++.....+++-+. ..|.+ |+-..+... .....|+|+|+||-.--- -.
T Consensus 356 ----~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla-~~GI~---V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITR 427 (1674)
T KOG0951|consen 356 ----EDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA-PLGIT---VLELTGDSQLGKEQIEETQVIVTTPEKWDIITR 427 (1674)
T ss_pred ----cccceecccceEEEEeeHHHHHHHHHHHHHhhcc-ccCcE---EEEecccccchhhhhhcceeEEeccchhhhhhc
Confidence 111111111 234478988888777666654321 23333 432222211 112569999999985422 12
Q ss_pred CccCCC-----cccEE---EecCCCCCchhhhhHHHHHHHHhcc--cCCCCceEEEEeccc-CHHHHHHHhhcccCCCCc
Q psy2470 310 VEPISQ-----SYLVE---LSILAPGGQDVIGEDMKAFAEQLKP--LKRTQLKLIISSATV-DAEEICQFYNISASSNAT 378 (858)
Q Consensus 310 ~~~~L~-----~~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~--~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~ 378 (858)
++.+.. +..++ .++. .|=-.-+...+....+. ......+++.+|||+ |-+..+.|+.. +++
T Consensus 428 k~gdraY~qlvrLlIIDEIHLLh----DdRGpvLESIVaRt~r~ses~~e~~RlVGLSATLPNy~DV~~Fl~v----~~~ 499 (1674)
T KOG0951|consen 428 KSGDRAYEQLVRLLIIDEIHLLH----DDRGPVLESIVARTFRRSESTEEGSRLVGLSATLPNYEDVASFLRV----DPE 499 (1674)
T ss_pred ccCchhHHHHHHHHhhhhhhhcc----cccchHHHHHHHHHHHHhhhcccCceeeeecccCCchhhhHHHhcc----Ccc
Confidence 222221 11222 3443 11111111111111100 223467899999999 77777887764 222
Q ss_pred EEEecC---eecceeEEEecCCccchHH---HHHHHH-HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc--------
Q psy2470 379 ILSVKG---HLYPVSVYYSNDPVVNYVQ---GVVDTA-IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-------- 443 (858)
Q Consensus 379 ~i~v~g---~~~~v~~~~~~~~~~~~~~---~~~~~l-~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-------- 443 (858)
-+..-+ |.-|.++.|.....++-.. ...+.. -++......++||||+-+++|..+.|+.++....
T Consensus 500 glf~fd~syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~qVLVFVHsRkET~ktA~aIRd~~le~dtls~f 579 (1674)
T KOG0951|consen 500 GLFYFDSSYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKNQVLVFVHSRKETAKTARAIRDKALEEDTLSRF 579 (1674)
T ss_pred cccccCcccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHH
Confidence 222222 2235666666554433221 122222 2334445568999999999999999998872110
Q ss_pred ----------CC------------CCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCC
Q psy2470 444 ----------QR------------EDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPG 501 (858)
Q Consensus 444 ----------~~------------~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g 501 (858)
++ +.-.+.+...|+||+..+|..+.+-|.+|.++|+|+|-..|.|++.|+=+++|- |
T Consensus 580 mre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlawgvnlpahtViik-g 658 (1674)
T KOG0951|consen 580 MREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAWGVNLPAHTVIIK-G 658 (1674)
T ss_pred HhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhhhcCCCcceEEec-C
Confidence 00 012345777899999999999999999999999999999999999999877774 2
Q ss_pred CccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC-----CceEEEeh
Q psy2470 502 FVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR-----SGHVYRKN 546 (858)
Q Consensus 502 ~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g-----~G~~~rL~ 546 (858)
...|||..|. +.++|+-+-.||.|||||.+ .|+.++=+
T Consensus 659 ---tqvy~pekg~----w~elsp~dv~qmlgragrp~~D~~gegiiit~~ 701 (1674)
T KOG0951|consen 659 ---TQVYDPEKGR----WTELSPLDVMQMLGRAGRPQYDTCGEGIIITDH 701 (1674)
T ss_pred ---ccccCcccCc----cccCCHHHHHHHHhhcCCCccCcCCceeeccCc
Confidence 2349999883 45789999999999999965 47777655
|
|
| >KOG0952|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=5e-14 Score=165.42 Aligned_cols=325 Identities=15% Similarity=0.157 Sum_probs=192.7
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCC-CCCCC-CCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQ-PEMGV-GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~-~~~g~-g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
.+-|.||||||||.++...- ++.+.+ .+.|. .+..-.++=++|++.||..++..+.+.++ ..|..
T Consensus 128 NMLIcAPTGsGKT~la~L~I---------Lr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~-~~gi~--- 194 (1230)
T KOG0952|consen 128 NMLICAPTGSGKTVLAELCI---------LRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLA-PLGIS--- 194 (1230)
T ss_pred CEEEECCCCCCchHHHHHHH---------HHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhcc-cccce---
Confidence 45578999999992222111 122221 11111 11122357799999999999888877654 22333
Q ss_pred eeEEE---eccceeecceeEEEeecCccc---c-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccC
Q psy2470 281 RGYMF---RKGRMKILVSKIFKMSQGKPS---D-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 281 vG~~v---r~~~~~~~~t~I~v~TpGrLl---~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~ 347 (858)
|+--. +........|+|+|.||...- | ..+|.. .+.+..| .+|..+-| -.+..+......+. ...
T Consensus 195 v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlLhd~RG-pvlEtiVaRtlr~v-ess 272 (1230)
T KOG0952|consen 195 VRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLLHDDRG-PVLETIVARTLRLV-ESS 272 (1230)
T ss_pred EEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhhcCccc-chHHHHHHHHHHHH-Hhh
Confidence 33211 111112256999999997643 2 222222 2223222 55551111 11222222222000 122
Q ss_pred CCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeeccee--EEEecCCcc-------chHHHHHHHHHHHHhhCC
Q psy2470 348 RTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVS--VYYSNDPVV-------NYVQGVVDTAIKIHESMP 417 (858)
Q Consensus 348 ~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~--~~~~~~~~~-------~~~~~~~~~l~~i~~~~~ 417 (858)
-...++|.+|||+ |.+.++.|+..++ -..++...++..||. ..+.-.... +..+...+.+.+.+..
T Consensus 273 qs~IRivgLSATlPN~eDvA~fL~vn~--~~glfsFd~~yRPvpL~~~~iG~k~~~~~~~~~~~d~~~~~kv~e~~~~-- 348 (1230)
T KOG0952|consen 273 QSMIRIVGLSATLPNYEDVARFLRVNP--YAGLFSFDQRYRPVPLTQGFIGIKGKKNRQQKKNIDEVCYDKVVEFLQE-- 348 (1230)
T ss_pred hhheEEEEeeccCCCHHHHHHHhcCCC--ccceeeecccccccceeeeEEeeecccchhhhhhHHHHHHHHHHHHHHc--
Confidence 3467899999999 9999999998421 123455555554443 332222111 1112334445555544
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCC-------CCc--c-------eEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQR-------EDL--K-------LLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~-------~~~--~-------~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
+.+++|||.++.+..+.|+.|.+..... ..+ + ......|+||.-++|..+.+-|+.|.++|++|
T Consensus 349 g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~c 428 (1230)
T KOG0952|consen 349 GHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCC 428 (1230)
T ss_pred CCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEe
Confidence 6789999999999999999987432111 111 1 23456799999999999999999999999999
Q ss_pred cCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEE--Eeh---hhHhhhh
Q psy2470 482 TNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVY--RKN---FMYNRLF 553 (858)
Q Consensus 482 TdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~--rL~---~~~~~l~ 553 (858)
|...+-|+++|+=-++|= | .+.||+..|.- .-.+..+-.|--|||||.+ .|..+ +-. +.|.+|-
T Consensus 429 TaTLAwGVNLPA~aViIK-G---T~~ydsskg~f----~dlgilDVlQifGRAGRPqFd~~G~giIiTt~dkl~~Y~sLl 500 (1230)
T KOG0952|consen 429 TATLAWGVNLPAYAVIIK-G---TQVYDSSKGSF----VDLGILDVLQIFGRAGRPQFDSSGEGIIITTRDKLDHYESLL 500 (1230)
T ss_pred cceeeeccCCcceEEEec-C---CcccccccCce----eeehHHHHHHHHhccCCCCCCCCceEEEEecccHHHHHHHHH
Confidence 999999999999666662 2 34599887621 3345677889999999964 24444 433 5566654
Q ss_pred h
Q psy2470 554 I 554 (858)
Q Consensus 554 ~ 554 (858)
.
T Consensus 501 ~ 501 (1230)
T KOG0952|consen 501 T 501 (1230)
T ss_pred c
Confidence 4
|
|
| >COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.2e-14 Score=169.07 Aligned_cols=279 Identities=16% Similarity=0.109 Sum_probs=188.9
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-++|-.|=|||=+.+|+||..- . .| .|+.|++||-+||+|-++.+.+-+ ...... |+.-
T Consensus 619 LiCGDVGFGKTEVAmRAAFkAV------------~--~G---KQVAvLVPTTlLA~QHy~tFkeRF-~~fPV~---I~~L 677 (1139)
T COG1197 619 LICGDVGFGKTEVAMRAAFKAV------------M--DG---KQVAVLVPTTLLAQQHYETFKERF-AGFPVR---IEVL 677 (1139)
T ss_pred eeecCcCCcHHHHHHHHHHHHh------------c--CC---CeEEEEcccHHhHHHHHHHHHHHh-cCCCee---EEEe
Confidence 4689999999999999998642 1 22 378999999999999999885443 234444 5555
Q ss_pred Eeccceee----------cceeEEEeecCccccCCCccCCCcccEEEecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 285 FRKGRMKI----------LVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 285 vr~~~~~~----------~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
-||...+. ...+|+|+|.--| .+|..+++...+ -+| .+--.|+-.. +.|| ..+.+.-++
T Consensus 678 SRF~s~kE~~~il~~la~G~vDIvIGTHrLL---~kdv~FkdLGLl-IID----EEqRFGVk~K--EkLK-~Lr~~VDvL 746 (1139)
T COG1197 678 SRFRSAKEQKEILKGLAEGKVDIVIGTHRLL---SKDVKFKDLGLL-IID----EEQRFGVKHK--EKLK-ELRANVDVL 746 (1139)
T ss_pred cccCCHHHHHHHHHHHhcCCccEEEechHhh---CCCcEEecCCeE-EEe----chhhcCccHH--HHHH-HHhccCcEE
Confidence 56655432 4479999997544 233333333322 112 1112222110 1111 335677889
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEec-CeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHH
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSVK-GHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEH 433 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v~-g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~ 433 (858)
-||||.-...+.--+.. ..+-.+|.-| ...+||+.+..+....- ..+.+..-+. .+|++-.-.|.-++|+.
T Consensus 747 TLSATPIPRTL~Msm~G--iRdlSvI~TPP~~R~pV~T~V~~~d~~~----ireAI~REl~--RgGQvfYv~NrV~~Ie~ 818 (1139)
T COG1197 747 TLSATPIPRTLNMSLSG--IRDLSVIATPPEDRLPVKTFVSEYDDLL----IREAILRELL--RGGQVFYVHNRVESIEK 818 (1139)
T ss_pred EeeCCCCcchHHHHHhc--chhhhhccCCCCCCcceEEEEecCChHH----HHHHHHHHHh--cCCEEEEEecchhhHHH
Confidence 99999844433322210 0122344333 44588988877643211 1122222222 37898888999999999
Q ss_pred HHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE-cCCCccceeccCCC
Q psy2470 434 IIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI-DPGFVKARWFNPNT 512 (858)
Q Consensus 434 l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI-d~g~~k~~~yd~~~ 512 (858)
+++.|++. .|..++...||.|+..+-+++|..|-+|+..|||||-|.|+|||||+++..| + . =| .-
T Consensus 819 ~~~~L~~L-----VPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe-~------AD-~f 885 (1139)
T COG1197 819 KAERLREL-----VPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIE-R------AD-KF 885 (1139)
T ss_pred HHHHHHHh-----CCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEe-c------cc-cc
Confidence 99999988 5789999999999999999999999999999999999999999999998777 2 0 11 22
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ ++.-|-.||.||... |.||-+|
T Consensus 886 GL----------sQLyQLRGRVGRS~~~AYAYfl~ 910 (1139)
T COG1197 886 GL----------AQLYQLRGRVGRSNKQAYAYFLY 910 (1139)
T ss_pred cH----------HHHHHhccccCCccceEEEEEee
Confidence 43 445589999999887 9999998
|
|
| >TIGR00631 uvrb excinuclease ABC, B subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.1e-14 Score=169.56 Aligned_cols=110 Identities=17% Similarity=0.253 Sum_probs=99.5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
.+.++|||++|++.++.+++.|.+. |+.+..+||++++.+|.++++.|++|+..|+||||++++|+|+|++++
T Consensus 441 ~g~~vLIf~~tk~~ae~L~~~L~~~-------gi~~~~lh~~~~~~eR~~~l~~fr~G~i~VLV~t~~L~rGfDiP~v~l 513 (655)
T TIGR00631 441 RNERVLVTTLTKKMAEDLTDYLKEL-------GIKVRYLHSEIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSL 513 (655)
T ss_pred CCCEEEEEECCHHHHHHHHHHHhhh-------ccceeeeeCCCCHHHHHHHHHHHhcCCceEEEEcChhcCCeeeCCCcE
Confidence 3578999999999999999999987 889999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||+ +|+..- -.|.+..+|+||+|||||...|.|+.++
T Consensus 514 Vvi--------~Dadif-----G~p~~~~~~iqriGRagR~~~G~vi~~~ 550 (655)
T TIGR00631 514 VAI--------LDADKE-----GFLRSERSLIQTIGRAARNVNGKVIMYA 550 (655)
T ss_pred EEE--------eCcccc-----cCCCCHHHHHHHhcCCCCCCCCEEEEEE
Confidence 999 553221 1577889999999999999889998877
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) |
| >KOG0351|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-14 Score=169.86 Aligned_cols=292 Identities=17% Similarity=0.148 Sum_probs=180.4
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.++-+||.||+ +.||+|+++.. . .++|++|..-|..-....+ ...++..... ..+-.
T Consensus 283 fvlmpTG~GKS-----LCYQlPA~l~~------------g---itvVISPL~SLm~DQv~~L-~~~~I~a~~L--~s~q~ 339 (941)
T KOG0351|consen 283 FVLMPTGGGKS-----LCYQLPALLLG------------G---VTVVISPLISLMQDQVTHL-SKKGIPACFL--SSIQT 339 (941)
T ss_pred EEEeecCCcee-----eEeeccccccC------------C---ceEEeccHHHHHHHHHHhh-hhcCcceeec--ccccc
Confidence 45789999999 88899987721 1 4699999988864333333 2233332222 11111
Q ss_pred Ee-----ccceeec--ceeEEEeecCcccc-C-CCc--cCCCc-----ccEE---EecCCCCCchhhhhHHHHHHHHhcc
Q psy2470 285 FR-----KGRMKIL--VSKIFKMSQGKPSD-S-GVE--PISQS-----YLVE---LSILAPGGQDVIGEDMKAFAEQLKP 345 (858)
Q Consensus 285 vr-----~~~~~~~--~t~I~v~TpGrLl~-~-~~~--~~L~~-----~~vl---R~l~~~~~~d~ll~~lk~~~~~l~~ 345 (858)
.. ......+ ..+|+|.||-.+.. . ... ..|.. .-|| ..+. -=|-||-....+.- .++
T Consensus 340 ~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVS-qWgHdFRp~Yk~l~--~l~- 415 (941)
T KOG0351|consen 340 AAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVS-QWGHDFRPSYKRLG--LLR- 415 (941)
T ss_pred HHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhh-hhcccccHHHHHHH--HHH-
Confidence 10 0001112 57999999988876 1 111 12222 1122 0000 00022222221111 111
Q ss_pred cCCCCceEEEEecccCH---HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEE
Q psy2470 346 LKRTQLKLIISSATVDA---EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDIL 422 (858)
Q Consensus 346 ~~~~~~q~il~SAT~~~---~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iL 422 (858)
...+..=+|.++||... +.+.+-++- .++.++.- .- .+-..+|...+..+ .......+..+-..++.+.+|
T Consensus 416 ~~~~~vP~iALTATAT~~v~~DIi~~L~l---~~~~~~~~-sf-nR~NL~yeV~~k~~-~~~~~~~~~~~~~~~~~~s~I 489 (941)
T KOG0351|consen 416 IRFPGVPFIALTATATERVREDVIRSLGL---RNPELFKS-SF-NRPNLKYEVSPKTD-KDALLDILEESKLRHPDQSGI 489 (941)
T ss_pred hhCCCCCeEEeehhccHHHHHHHHHHhCC---CCcceecc-cC-CCCCceEEEEeccC-ccchHHHHHHhhhcCCCCCeE
Confidence 11233567889999843 334444442 13443221 11 11112222111111 122333344444556678899
Q ss_pred EEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCC
Q psy2470 423 AFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF 502 (858)
Q Consensus 423 VFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~ 502 (858)
|+|.++.+|+.++..|++. ++.+..+|+||+..+|..|-+.|-.++.+|||||=--..|||-|||++||.++
T Consensus 490 IYC~sr~~ce~vs~~L~~~-------~~~a~~YHAGl~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~- 561 (941)
T KOG0351|consen 490 IYCLSRKECEQVSAVLRSL-------GKSAAFYHAGLPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYS- 561 (941)
T ss_pred EEeCCcchHHHHHHHHHHh-------chhhHhhhcCCCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECC-
Confidence 9999999999999999988 88999999999999999999999999999999998889999999999999955
Q ss_pred ccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhhhhh
Q psy2470 503 VKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNRLFI 554 (858)
Q Consensus 503 ~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~l~~ 554 (858)
.|-|-+.|-|=+|||||-|. ..|..+| .++..+..
T Consensus 562 -----------------lPks~E~YYQE~GRAGRDG~~s~C~l~y~~~D~~~l~~ 599 (941)
T KOG0351|consen 562 -----------------LPKSFEGYYQEAGRAGRDGLPSSCVLLYGYADISELRR 599 (941)
T ss_pred -----------------CchhHHHHHHhccccCcCCCcceeEEecchhHHHHHHH
Confidence 56777889999999999997 9999999 66655433
|
|
| >KOG0352|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.7e-14 Score=153.04 Aligned_cols=104 Identities=19% Similarity=0.216 Sum_probs=96.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.|--||+|.|+++||.++-.|... |+.+..+|+||...||..|-+..-+|+..||+||+--..|+|-|+|++|
T Consensus 255 ~GCGIVYCRTR~~cEq~AI~l~~~-------Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFV 327 (641)
T KOG0352|consen 255 TGCGIVYCRTRNECEQVAIMLEIA-------GIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFV 327 (641)
T ss_pred CcceEEEeccHHHHHHHHHHhhhc-------CcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEE
Confidence 377899999999999999999877 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|. || .|-+.+.|-|-.|||||-|.-..-|||
T Consensus 328 iH--------W~----------~~qn~AgYYQESGRAGRDGk~SyCRLY 358 (641)
T KOG0352|consen 328 IH--------WS----------PSQNLAGYYQESGRAGRDGKRSYCRLY 358 (641)
T ss_pred Ee--------cC----------chhhhHHHHHhccccccCCCccceeee
Confidence 99 88 677889999999999999986555777
|
|
| >COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.50 E-value=3e-13 Score=163.15 Aligned_cols=319 Identities=18% Similarity=0.111 Sum_probs=203.6
Q ss_pred hhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 185 QPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+++.++++-.+...+ .+-+.|+|||||| +..-|.+-..+ ...+ .++=++|+..|..|...
T Consensus 121 D~fQ~~a~~~Ler~e---sVlV~ApTssGKT---vVaeyAi~~al------------~~~q--rviYTsPIKALsNQKyr 180 (1041)
T COG4581 121 DPFQQEAIAILERGE---SVLVCAPTSSGKT---VVAEYAIALAL------------RDGQ--RVIYTSPIKALSNQKYR 180 (1041)
T ss_pred CHHHHHHHHHHhCCC---cEEEEccCCCCcc---hHHHHHHHHHH------------HcCC--ceEeccchhhhhhhHHH
Confidence 455555555555544 3345699999999 11111111000 1112 26889999999999999
Q ss_pred HHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE-----EecCCCCCchhhhhHHH
Q psy2470 265 EFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE-----LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 265 ~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk 337 (858)
.+....|.- ... +|... ++-...+.+.++|||.-+|-. + .+...+..+..| .-+. |-.-|...
T Consensus 181 dl~~~fgdv-~~~---vGL~T-GDv~IN~~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~-----D~eRG~VW 250 (1041)
T COG4581 181 DLLAKFGDV-ADM---VGLMT-GDVSINPDAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIG-----DRERGVVW 250 (1041)
T ss_pred HHHHHhhhh-hhh---cccee-cceeeCCCCceEEeeHHHHHHHhccCcccccccceEEEEeeeecc-----ccccchhH
Confidence 988887743 222 34322 233444568899999976655 3 344556666555 1111 12244443
Q ss_pred HHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCC-c---cch----HHH----
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDP-V---VNY----VQG---- 404 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~-~---~~~----~~~---- 404 (858)
+-. ++ ..+...|+|++|||+ |.++|+.|+......+..++..+-|.-|.++++.... . .|. ...
T Consensus 251 EE~-Ii--~lP~~v~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~ 327 (1041)
T COG4581 251 EEV-II--LLPDHVRFVFLSATVPNAEEFAEWIQRVHSQPIHVVSTEHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPS 327 (1041)
T ss_pred HHH-HH--hcCCCCcEEEEeCCCCCHHHHHHHHHhccCCCeEEEeecCCCCCeEEEEecCCceeeeecccccchhhcchh
Confidence 322 12 557788999999999 9999999998544334556666667667776655431 0 000 000
Q ss_pred HHHH--------------------------------------HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc---
Q psy2470 405 VVDT--------------------------------------AIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN--- 443 (858)
Q Consensus 405 ~~~~--------------------------------------l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~--- 443 (858)
+... +...+.....-++++|+=++.+|+..+..+.....
T Consensus 328 a~~~l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~ 407 (1041)
T COG4581 328 ANRSLSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLT 407 (1041)
T ss_pred hhhhhhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccC
Confidence 0000 11112222345799999999999999988862110
Q ss_pred -----------------CC-CCcceE-------------EEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 444 -----------------QR-EDLKLL-------------ILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 444 -----------------~~-~~~~~~-------------v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
+. +..++. +...|++|=+..+..+..-|..|-+||++||.+.+-|++.|
T Consensus 408 ~~~e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GLvkvvFaTeT~s~GiNmP 487 (1041)
T COG4581 408 EEKERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGLVKVVFATETFAIGINMP 487 (1041)
T ss_pred CcHHHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccceeEEeehhhhhhhcCCc
Confidence 00 011111 33679999999999999999999999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.-++|+- ++.| ||... ..|.+..+|.|.+|||||.|- |.++...
T Consensus 488 artvv~~-~l~K---~dG~~------~r~L~~gEy~QmsGRAGRRGlD~~G~vI~~~ 534 (1041)
T COG4581 488 ARTVVFT-SLSK---FDGNG------HRWLSPGEYTQMSGRAGRRGLDVLGTVIVIE 534 (1041)
T ss_pred ccceeee-eeEE---ecCCc------eeecChhHHHHhhhhhccccccccceEEEec
Confidence 8877774 3322 55222 279999999999999999985 9999885
|
|
| >KOG0947|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-13 Score=159.65 Aligned_cols=313 Identities=17% Similarity=0.167 Sum_probs=196.1
Q ss_pred CCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCc
Q psy2470 167 PETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKA 246 (858)
Q Consensus 167 ~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~ 246 (858)
+.+||...+....+++..- +.|.|-+|||++. ..|..+- + +..
T Consensus 298 lD~FQk~Ai~~lerg~SVF--------------------VAAHTSAGKTvVA-EYAiala----------q------~h~ 340 (1248)
T KOG0947|consen 298 LDTFQKEAIYHLERGDSVF--------------------VAAHTSAGKTVVA-EYAIALA----------Q------KHM 340 (1248)
T ss_pred ccHHHHHHHHHHHcCCeEE--------------------EEecCCCCcchHH-HHHHHHH----------H------hhc
Confidence 5666666666666664332 2499999999221 1222111 1 111
Q ss_pred cCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE----
Q psy2470 247 RPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE---- 320 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl---- 320 (858)
.+++-.+|...|--|=...+.+.+| . || .+.++.+..+...+++||.-+|-. + .+...+.++..|
T Consensus 341 TR~iYTSPIKALSNQKfRDFk~tF~-D-------vg-LlTGDvqinPeAsCLIMTTEILRsMLYrgadliRDvE~VIFDE 411 (1248)
T KOG0947|consen 341 TRTIYTSPIKALSNQKFRDFKETFG-D-------VG-LLTGDVQINPEASCLIMTTEILRSMLYRGADLIRDVEFVIFDE 411 (1248)
T ss_pred cceEecchhhhhccchHHHHHHhcc-c-------cc-eeecceeeCCCcceEeehHHHHHHHHhcccchhhccceEEEee
Confidence 2468899999998888777755554 2 34 344555666778999999998876 2 333344444444
Q ss_pred -EecCCCCCchhhhhHH--HHHHHHhcccCCCCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecC
Q psy2470 321 -LSILAPGGQDVIGEDM--KAFAEQLKPLKRTQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSND 396 (858)
Q Consensus 321 -R~l~~~~~~d~ll~~l--k~~~~~l~~~~~~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~ 396 (858)
.=++ |.--|.. ..+. .+|+..++|++|||. |..+|++|.+.....+--|+.-..|..|.+++....
T Consensus 412 VHYiN-----D~eRGvVWEEViI-----MlP~HV~~IlLSATVPN~~EFA~WIGRtK~K~IyViST~kRPVPLEh~l~t~ 481 (1248)
T KOG0947|consen 412 VHYIN-----DVERGVVWEEVII-----MLPRHVNFILLSATVPNTLEFADWIGRTKQKTIYVISTSKRPVPLEHYLYTK 481 (1248)
T ss_pred eeecc-----cccccccceeeee-----eccccceEEEEeccCCChHHHHHHhhhccCceEEEEecCCCccceEEEEEec
Confidence 1111 1112211 1112 457899999999999 999999999854322222333334444555442211
Q ss_pred C--c-----------c--------------------------------------------------chHH--HHHHHHHH
Q psy2470 397 P--V-----------V--------------------------------------------------NYVQ--GVVDTAIK 411 (858)
Q Consensus 397 ~--~-----------~--------------------------------------------------~~~~--~~~~~l~~ 411 (858)
. . . +... ...+++.+
T Consensus 482 ~~l~kiidq~g~fl~~~~~~a~~~~~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~ 561 (1248)
T KOG0947|consen 482 KSLFKIIDQNGIFLLKGIKDAKDSLKKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINH 561 (1248)
T ss_pred cceehhhcccchhhhhcchhhhhhhcccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHH
Confidence 0 0 0 0000 11223333
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------------Ccc---------eEEEeccCCC
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE-----------------------DLK---------LLILPMHGSL 459 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~-----------------------~~~---------~~v~~LHg~l 459 (858)
+. ...-=+++||+=++..|+..++.|....-... .|. --+...|||+
T Consensus 562 L~-k~~lLP~VvFvFSkkrCde~a~~L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~Gl 640 (1248)
T KOG0947|consen 562 LR-KKNLLPVVVFVFSKKRCDEYADYLTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGL 640 (1248)
T ss_pred Hh-hcccCceEEEEEccccHHHHHHHHhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccc
Confidence 32 22345799999999999999999964311100 010 1255679999
Q ss_pred CHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 460 PNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 460 ~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
-+--..-|.--|..|-+|||+||...|.|++.|.-++|+++= .| .|-+.. .-..+.+|.|++|||||-|-
T Consensus 641 LPivKE~VE~LFqrGlVKVLFATETFAMGVNMPARtvVF~Sl-~K---hDG~ef------R~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 641 LPIVKEVVELLFQRGLVKVLFATETFAMGVNMPARTVVFSSL-RK---HDGNEF------RELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hHHHHHHHHHHHhcCceEEEeehhhhhhhcCCCceeEEeeeh-hh---ccCcce------eecCChhHHhhhcccccccc
Confidence 998888888889999999999999999999999999999842 22 342222 45778999999999999984
Q ss_pred ---ceEEEeh
Q psy2470 540 ---GHVYRKN 546 (858)
Q Consensus 540 ---G~~~rL~ 546 (858)
|.++-+.
T Consensus 711 D~tGTVii~~ 720 (1248)
T KOG0947|consen 711 DETGTVIIMC 720 (1248)
T ss_pred CcCceEEEEe
Confidence 9988877
|
|
| >PRK05298 excinuclease ABC subunit B; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-13 Score=164.70 Aligned_cols=108 Identities=19% Similarity=0.263 Sum_probs=98.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
..++|||++|++.++.+++.|... |+.+..+||++++.+|..+++.|++|...|+|||+++++|+|+|++++|
T Consensus 446 g~~viIf~~t~~~ae~L~~~L~~~-------gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGfdlp~v~lV 518 (652)
T PRK05298 446 GERVLVTTLTKRMAEDLTDYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDIPEVSLV 518 (652)
T ss_pred CCEEEEEeCCHHHHHHHHHHHhhc-------ceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCccccCCcEE
Confidence 568999999999999999999977 8999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCC-CCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNT-LTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~-g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+ ||... | .|.+.++|+||+|||||...|.|+.+.
T Consensus 519 ii--------~d~eifG------~~~~~~~yiqr~GR~gR~~~G~~i~~~ 554 (652)
T PRK05298 519 AI--------LDADKEG------FLRSERSLIQTIGRAARNVNGKVILYA 554 (652)
T ss_pred EE--------eCCcccc------cCCCHHHHHHHhccccCCCCCEEEEEe
Confidence 99 44321 2 567889999999999998789999887
|
|
| >PRK04914 ATP-dependent helicase HepA; Validated | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.2e-13 Score=168.94 Aligned_cols=118 Identities=13% Similarity=0.122 Sum_probs=102.4
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC--CcEEEEEec
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR--AMRKIVIAT 482 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~--g~~kVlvAT 482 (858)
+++.+.+++......++|||+++++.++.+++.|+.. .|+.+..+||+|++.+|.++++.|++ |..+|+|||
T Consensus 480 Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~------~Gi~~~~ihG~~s~~eR~~~~~~F~~~~~~~~VLIsT 553 (956)
T PRK04914 480 RVEWLIDFLKSHRSEKVLVICAKAATALQLEQALRER------EGIRAAVFHEGMSIIERDRAAAYFADEEDGAQVLLCS 553 (956)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhc------cCeeEEEEECCCCHHHHHHHHHHHhcCCCCccEEEec
Confidence 4455667776666789999999999999999999633 18999999999999999999999987 469999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c--eEEEeh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G--HVYRKN 546 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G--~~~rL~ 546 (858)
+++++|+|++.+++||| || .|-+++.|+||+||+||.|. | .+|.++
T Consensus 554 dvgseGlNlq~a~~VIn--------fD----------lP~nP~~~eQRIGR~~RiGQ~~~V~i~~~~ 602 (956)
T PRK04914 554 EIGSEGRNFQFASHLVL--------FD----------LPFNPDLLEQRIGRLDRIGQKHDIQIHVPY 602 (956)
T ss_pred hhhccCCCcccccEEEE--------ec----------CCCCHHHHHHHhcccccCCCCceEEEEEcc
Confidence 99999999999999999 88 78999999999999999987 3 344555
|
|
| >KOG0948|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=6.6e-14 Score=158.90 Aligned_cols=295 Identities=16% Similarity=0.112 Sum_probs=190.9
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|.|-+||| +.+-+.+-+.+ + .+.+++-.+|...|.-|=+..+..|++ .+|.-
T Consensus 147 VLVSAHTSAGKT---VVAeYAIA~sL---r-----------~kQRVIYTSPIKALSNQKYREl~~EF~-DVGLM------ 202 (1041)
T KOG0948|consen 147 VLVSAHTSAGKT---VVAEYAIAMSL---R-----------EKQRVIYTSPIKALSNQKYRELLEEFK-DVGLM------ 202 (1041)
T ss_pred EEEEeecCCCcc---hHHHHHHHHHH---H-----------hcCeEEeeChhhhhcchhHHHHHHHhc-cccee------
Confidence 445699999999 33334433322 1 122478899999999999998888876 34443
Q ss_pred EEeccceeecceeEEEeecCcccc--CCCccCCCcccEE--------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD--SGVEPISQSYLVE--------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~--~~~~~~L~~~~vl--------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
. ++-...+.+..+|||..+|-. ..+.-.+..+..| |.=+ -+..+. ..+. ..+++.+.
T Consensus 203 -T-GDVTInP~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE----RGVVWE--ETII-----llP~~vr~ 269 (1041)
T KOG0948|consen 203 -T-GDVTINPDASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE----RGVVWE--ETII-----LLPDNVRF 269 (1041)
T ss_pred -e-cceeeCCCCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc----cceeee--eeEE-----eccccceE
Confidence 2 122334567889999998866 2344444544444 2222 111111 1111 45788899
Q ss_pred EEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecC---------Ccc-----chHH---------------
Q psy2470 354 IISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSND---------PVV-----NYVQ--------------- 403 (858)
Q Consensus 354 il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~---------~~~-----~~~~--------------- 403 (858)
+++|||+ |+..|++|...-....+.++.-+-|.-|..+|.-+. ..+ +...
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPLQHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~~~ 349 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESDGK 349 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcceeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCccc
Confidence 9999999 999999998643222355555555555555441110 000 0000
Q ss_pred --------------------HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------
Q psy2470 404 --------------------GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE----------------- 446 (858)
Q Consensus 404 --------------------~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~----------------- 446 (858)
...+.+..+.. ....++|||.=++++||..|-.+.+..-..+
T Consensus 350 ~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~-~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~nAi~~L 428 (1041)
T KOG0948|consen 350 KKANKKGRKGGTGGKGPGDSDIYKIVKMIME-RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNNAIDQL 428 (1041)
T ss_pred cccccccccCCcCCCCCCcccHHHHHHHHHh-hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHHHHHhc
Confidence 11222222222 2356899999999999999988864311100
Q ss_pred ---Ccce------------EEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 447 ---DLKL------------LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 447 ---~~~~------------~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
+.++ -+...||||-+--.+-+.=-|.+|-+|||+||..-+-||+.|.-++|.- ..+.||-.
T Consensus 429 seeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPAkTVvFT----~~rKfDG~ 504 (1041)
T KOG0948|consen 429 SEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPAKTVVFT----AVRKFDGK 504 (1041)
T ss_pred ChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcceeEEEe----eccccCCc
Confidence 1111 2556799999887776666689999999999999999999999888874 12347744
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.- .|+|.-+|+|++|||||-|- |+|+.+.
T Consensus 505 ~f------RwissGEYIQMSGRAGRRG~DdrGivIlmi 536 (1041)
T KOG0948|consen 505 KF------RWISSGEYIQMSGRAGRRGIDDRGIVILMI 536 (1041)
T ss_pred ce------eeecccceEEecccccccCCCCCceEEEEe
Confidence 33 89999999999999999995 9999988
|
|
| >COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=140.53 Aligned_cols=345 Identities=17% Similarity=0.149 Sum_probs=188.4
Q ss_pred hhhhcCCCCchhhhHHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCC---hhHHHHHHHhcCCCC
Q psy2470 123 ETMAEMPLHPIHAKVLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQT---QPLLLRVRRALDFPD 199 (858)
Q Consensus 123 ~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~---~~~~~~~~~~~~~~~ 199 (858)
+.-+.+|....+.+.+|.-|-+-+ +++++ .-+|..|..+. +..-++... ..+.+-+..+++...
T Consensus 51 ~~~~~lp~~~~YCr~Cl~mgRv~s---d~~Ly---------~~~~~~fp~~s-~L~W~G~Ls~~Q~~as~~l~q~i~~k~ 117 (441)
T COG4098 51 ELFAKLPCGCLYCRNCLMMGRVRS---DQKLY---------YWKPYAFPKKS-VLQWKGTLSPGQKKASNQLVQYIKQKE 117 (441)
T ss_pred hhhcccccceEeehhhhhcccccc---cceee---------ecCCcCCCccc-eeeeccccChhHHHHHHHHHHHHHhcC
Confidence 345567777667766665554432 11111 11244454444 333333221 122233334443222
Q ss_pred ccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhC-CcCccEe
Q psy2470 200 MPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMG-CRMDFEY 278 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g-~~~g~~~ 278 (858)
..-+-|-||+||| .+.|+ -+.++-. .| -.+.+-+|+---+..++.|+.+.+. +.+...
T Consensus 118 ---~~lv~AV~GaGKT-----------EMif~--~i~~al~-~G---~~vciASPRvDVclEl~~Rlk~aF~~~~I~~L- 176 (441)
T COG4098 118 ---DTLVWAVTGAGKT-----------EMIFQ--GIEQALN-QG---GRVCIASPRVDVCLELYPRLKQAFSNCDIDLL- 176 (441)
T ss_pred ---cEEEEEecCCCch-----------hhhHH--HHHHHHh-cC---CeEEEecCcccchHHHHHHHHHhhccCCeeeE-
Confidence 2334577899999 44433 1111110 11 2467788887778888999877654 554433
Q ss_pred eeeeEEEeccceeecceeEEEeecCccccCCCccCCCcccEEEecCCCCC-chhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 279 ISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGG-QDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 279 ~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~~~~~-~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
|+ ++...-.+.++|||.--|++..... ++.+|--+||=|. +|-.+...- +...+++--+|.+|
T Consensus 177 ----yg---~S~~~fr~plvVaTtHQLlrFk~aF---D~liIDEVDAFP~~~d~~L~~Av------~~ark~~g~~IylT 240 (441)
T COG4098 177 ----YG---DSDSYFRAPLVVATTHQLLRFKQAF---DLLIIDEVDAFPFSDDQSLQYAV------KKARKKEGATIYLT 240 (441)
T ss_pred ----ec---CCchhccccEEEEehHHHHHHHhhc---cEEEEeccccccccCCHHHHHHH------HHhhcccCceEEEe
Confidence 11 1111123789999999998822211 1112233332111 222222211 11234566789999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeec----ceeEEEecCCccchHHH--HHHHHHHHHhhC--CCCCEEEEcCCHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLY----PVSVYYSNDPVVNYVQG--VVDTAIKIHESM--PVGDILAFVIGLE 429 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~----~v~~~~~~~~~~~~~~~--~~~~l~~i~~~~--~~g~iLVFl~t~~ 429 (858)
||.. +++.+..... +-..+.++.|.| |+.-+........++.. .-..+...++.+ ...++|||+|+.+
T Consensus 241 ATp~-k~l~r~~~~g---~~~~~klp~RfH~~pLpvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF~p~I~ 316 (441)
T COG4098 241 ATPT-KKLERKILKG---NLRILKLPARFHGKPLPVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIFFPEIE 316 (441)
T ss_pred cCCh-HHHHHHhhhC---CeeEeecchhhcCCCCCCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEEecchH
Confidence 9964 4444443311 233355555432 33322222111111111 011222232221 2468999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE-cCCCccceec
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI-DPGFVKARWF 508 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI-d~g~~k~~~y 508 (858)
..+.+++.|++.. +...+...||. ...|.+-.+.|++|+.++|++|.|+|||+|+|+|+++| ++
T Consensus 317 ~~eq~a~~lk~~~-----~~~~i~~Vhs~--d~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlga-------- 381 (441)
T COG4098 317 TMEQVAAALKKKL-----PKETIASVHSE--DQHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGA-------- 381 (441)
T ss_pred HHHHHHHHHHhhC-----Cccceeeeecc--CccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecC--------
Confidence 9999999997441 35566777865 34566777889999999999999999999999999766 52
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCC--C-ceEEEe
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVR--S-GHVYRK 545 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~-G~~~rL 545 (858)
+++ --+.+..+|-+||+||.- + |..+-+
T Consensus 382 eh~---------vfTesaLVQIaGRvGRs~~~PtGdv~FF 412 (441)
T COG4098 382 EHR---------VFTESALVQIAGRVGRSLERPTGDVLFF 412 (441)
T ss_pred Ccc---------cccHHHHHHHhhhccCCCcCCCCcEEEE
Confidence 222 136788999999999963 2 665443
|
|
| >cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.1e-13 Score=128.31 Aligned_cols=103 Identities=24% Similarity=0.461 Sum_probs=93.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
+.+++|||+++...++.+++.|.+. +..+..+||+++..+|..+++.|.+|..+|+++|+.+++|+|+|++++
T Consensus 27 ~~~~~lvf~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~ 99 (131)
T cd00079 27 KGGKVLIFCPSKKMLDELAELLRKP-------GIKVAALHGDGSQEEREEVLKDFREGEIVVLVATDVIARGIDLPNVSV 99 (131)
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEECCCCHHHHHHHHHHHHcCCCcEEEEcChhhcCcChhhCCE
Confidence 4689999999999999999999874 778999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
||- ++ .|.+..++.|++||+||.|. |.|+.
T Consensus 100 vi~--------~~----------~~~~~~~~~Q~~GR~~R~~~~~~~~~ 130 (131)
T cd00079 100 VIN--------YD----------LPWSPSSYLQRIGRAGRAGQKGTAIL 130 (131)
T ss_pred EEE--------eC----------CCCCHHHheecccccccCCCCceEEe
Confidence 997 44 36788899999999999995 88774
|
|
| >PRK12900 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.5e-13 Score=160.90 Aligned_cols=157 Identities=18% Similarity=0.215 Sum_probs=116.8
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ...+|.+.++ -.++.||... |+. .+|.. ..++..+.++.+...+. .+.+|||
T Consensus 535 kLaGMTGTA~te~~Ef~~iY~------L~Vv~IPTnr-P~~R~D~~d~vy~t--~~eK~~Ali~~I~~~~~--~grpVLI 603 (1025)
T PRK12900 535 KLAGMTGTAETEASEFFEIYK------LDVVVIPTNK-PIVRKDMDDLVYKT--RREKYNAIVLKVEELQK--KGQPVLV 603 (1025)
T ss_pred hhcccCCCChhHHHHHHHHhC------CcEEECCCCC-CcceecCCCeEecC--HHHHHHHHHHHHHHHhh--CCCCEEE
Confidence 566788888 4556766665 5677776432 322 22221 11222333333333332 3678999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC---CeeEE---
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP---GIVYV--- 497 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp---~V~~V--- 497 (858)
|++|.+.++.+++.|.+. ++....||+ .|.+|...+..|+.+.-.|+||||+|+||+||+ +|..|
T Consensus 604 ft~Sve~sE~Ls~~L~~~-------gI~h~vLna--kq~~REa~Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL 674 (1025)
T PRK12900 604 GTASVEVSETLSRMLRAK-------RIAHNVLNA--KQHDREAEIVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGL 674 (1025)
T ss_pred EeCcHHHHHHHHHHHHHc-------CCCceeecC--CHHHhHHHHHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCc
Confidence 999999999999999987 888899997 688999999999999999999999999999999 56443
Q ss_pred --EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 498 --IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 498 --Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ ++ .|-|...|.||.|||||.|. |.+..+.
T Consensus 675 ~VIg--------te----------rhes~Rid~Ql~GRtGRqGdpGsS~ffv 708 (1025)
T PRK12900 675 FILG--------SE----------RHESRRIDRQLRGRAGRQGDPGESVFYV 708 (1025)
T ss_pred eeeC--------CC----------CCchHHHHHHHhhhhhcCCCCcceEEEe
Confidence 66 33 56788889999999999997 9998877
|
|
| >PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.7e-14 Score=121.29 Aligned_cols=72 Identities=28% Similarity=0.490 Sum_probs=68.5
Q ss_pred ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHH
Q psy2470 449 KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAV 528 (858)
Q Consensus 449 ~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~ 528 (858)
++.+..+||++++++|..+++.|.+|..+||+||+++++|+|+|++++||. |+ .|-+..+|.
T Consensus 7 ~~~~~~i~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~--------~~----------~~~~~~~~~ 68 (78)
T PF00271_consen 7 GIKVAIIHGDMSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIF--------YD----------PPWSPEEYI 68 (78)
T ss_dssp TSSEEEESTTSHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEE--------SS----------SESSHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHhhccCceEEEeeccccccccccccccccc--------cc----------cCCCHHHHH
Confidence 889999999999999999999999999999999999999999999999999 55 478899999
Q ss_pred HhhcccCCCC
Q psy2470 529 QRAGRAGRVR 538 (858)
Q Consensus 529 qR~GRaGR~g 538 (858)
||+||+||.|
T Consensus 69 Q~~GR~~R~g 78 (78)
T PF00271_consen 69 QRIGRAGRIG 78 (78)
T ss_dssp HHHTTSSTTT
T ss_pred HHhhcCCCCC
Confidence 9999999976
|
It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B .... |
| >COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.3e-11 Score=142.12 Aligned_cols=94 Identities=18% Similarity=0.239 Sum_probs=83.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
..+++||+...+.++.++..+... +. +..+.|..++.+|..+++.|+.|..++||++.|+.-|+|+|+++.+
T Consensus 283 ~~~~lif~~~~~~a~~i~~~~~~~-------~~-~~~it~~t~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~ 354 (442)
T COG1061 283 GDKTLIFASDVEHAYEIAKLFLAP-------GI-VEAITGETPKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVL 354 (442)
T ss_pred CCcEEEEeccHHHHHHHHHHhcCC-------Cc-eEEEECCCCHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEE
Confidence 568999999999999999988754 55 8889999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV 537 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~ 537 (858)
|=.. ..-|+..|.||+||.=|.
T Consensus 355 i~~~------------------~t~S~~~~~Q~lGR~LR~ 376 (442)
T COG1061 355 IILR------------------PTGSRRLFIQRLGRGLRP 376 (442)
T ss_pred EEeC------------------CCCcHHHHHHHhhhhccC
Confidence 9621 125788899999999994
|
|
| >PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.4e-12 Score=155.71 Aligned_cols=110 Identities=20% Similarity=0.283 Sum_probs=86.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccC--CCCcceEEEeccCCCCHHHHHHhcCCCCCCcE-EEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQ--REDLKLLILPMHGSLPNNEQIKVFRPTPRAMR-KIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~--~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~-kVlvATdvAergldIp~ 493 (858)
.+++.||||.+.+.++.+++.|++.... .+..+..+..+||+.+. +.++++.|+++.. +|+|++|++.+|+|+|.
T Consensus 697 ~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~~~--~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~ 774 (1123)
T PRK11448 697 GEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSIDK--PDQLIRRFKNERLPNIVVTVDLLTTGIDVPS 774 (1123)
T ss_pred CCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCccc--hHHHHHHHhCCCCCeEEEEecccccCCCccc
Confidence 4589999999999999999998853210 11123356678998864 5678999999876 79999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC--ceE-EEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS--GHV-YRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~-~rL~ 546 (858)
|.+||. +. .+-|+..|.||+||+.|..+ |+- +.++
T Consensus 775 v~~vVf--------~r----------pvkS~~lf~QmIGRgtR~~~~~~K~~f~I~ 812 (1123)
T PRK11448 775 ICNLVF--------LR----------RVRSRILYEQMLGRATRLCPEIGKTHFRIF 812 (1123)
T ss_pred ccEEEE--------ec----------CCCCHHHHHHHHhhhccCCccCCCceEEEE
Confidence 999998 44 45688899999999999876 453 3444
|
|
| >PF07717 OB_NTP_bind: Oligonucleotide/oligosaccharide-binding (OB)-fold; InterPro: IPR011709 This domain is found towards the C terminus of the DEAD-box helicases (IPR011545 from INTERPRO) | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.2e-13 Score=123.80 Aligned_cols=73 Identities=25% Similarity=0.484 Sum_probs=56.4
Q ss_pred HHHHHHHHhcCCCCCCC-------------CCChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCCCCC
Q psy2470 784 NQMILLLKKSSIPLVTS-------------PRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQ 850 (858)
Q Consensus 784 ~QL~~~l~~~~~~~~~~-------------~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~ 850 (858)
+||.++|+++|+...+. ..+...|++|||+|||+|+|++++++.|+++.++..++|||+|+|++ ++
T Consensus 1 ~QL~~il~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~aG~~~nvA~~~~~~~y~~~~~~~~v~iHPsS~l~~-~~ 79 (114)
T PF07717_consen 1 KQLLRILERIGFVPQSASSQSISQRPPNENRDQWELIRAALCAGFYPNVARRDNKGSYKTLSNGQPVFIHPSSVLFK-KP 79 (114)
T ss_dssp HHHHHHHHHTT----------TTST-----HTHCHHHHHHHHHHHCCCEEEE-TTSSEEETTTG-EEEE-TTSTTTT-TT
T ss_pred CHHHHHHHHcCCCCCccccccccccccccccccHHHHHHHHHHhhhhheEEeCCCCCEEEecCCCEEEEecCccccc-cc
Confidence 59999999998743321 13467899999999999999999889999998888999999999976 57
Q ss_pred CCeEEec
Q psy2470 851 PQCTHLE 857 (858)
Q Consensus 851 P~wvvy~ 857 (858)
|+||||+
T Consensus 80 p~~vvy~ 86 (114)
T PF07717_consen 80 PKWVVYH 86 (114)
T ss_dssp -SEEEEE
T ss_pred cccchhh
Confidence 8999997
|
In these helicases it appears to be always found in association with IPR007502 from INTERPRO. ; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PRK12899 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.1e-11 Score=145.66 Aligned_cols=115 Identities=22% Similarity=0.182 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
.+.++.+...|.. +.+|||-+.+.+.-+.++..|.+. ++....|++.-...|-.-|-++-+. -.|.|||
T Consensus 555 ~ai~~ei~~~~~~--grPvLigt~si~~se~ls~~L~~~-------gi~h~vLNak~~~~Ea~iia~AG~~--g~VTIAT 623 (970)
T PRK12899 555 HAIVAEIASIHRK--GNPILIGTESVEVSEKLSRILRQN-------RIEHTVLNAKNHAQEAEIIAGAGKL--GAVTVAT 623 (970)
T ss_pred HHHHHHHHHHHhC--CCCEEEEeCcHHHHHHHHHHHHHc-------CCcceecccchhhhHHHHHHhcCCC--CcEEEee
Confidence 3445555555554 457999999999999999999976 6776777776433333333333333 3689999
Q ss_pred CcccccCCCCCe--------eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 483 NIAETSITIPGI--------VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 483 dvAergldIp~V--------~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|.|.||-||.== =|||-+. .+.|.---.|=.|||||.|. |.+--+.
T Consensus 624 NmAGRGTDIkl~~~v~~~GGLhVIgTe------------------r~es~Rid~Ql~GRagRQGdpGss~f~l 678 (970)
T PRK12899 624 NMAGRGTDIKLDEEAVAVGGLYVIGTS------------------RHQSRRIDRQLRGRCARLGDPGAAKFFL 678 (970)
T ss_pred ccccCCcccccCchHHhcCCcEEEeec------------------cCchHHHHHHHhcccccCCCCCceeEEE
Confidence 999999998522 2555544 33455555689999999997 8765433
|
|
| >KOG0353|consensus | Back alignment and domain information |
|---|
Probab=99.27 E-value=3.3e-11 Score=127.62 Aligned_cols=94 Identities=14% Similarity=0.156 Sum_probs=78.7
Q ss_pred HHHHHHHHhhCC-CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 406 VDTAIKIHESMP-VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 406 ~~~l~~i~~~~~-~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
.+.+.+++...- +..-||+|=++.+++.++..|+.+ |+.+..+|+.|.++++.-+-+..-.|++.|||||=-
T Consensus 304 ~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~-------gi~a~~yha~lep~dks~~hq~w~a~eiqvivatva 376 (695)
T KOG0353|consen 304 IEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNH-------GIHAGAYHANLEPEDKSGAHQGWIAGEIQVIVATVA 376 (695)
T ss_pred HHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhc-------CccccccccccCccccccccccccccceEEEEEEee
Confidence 333444443332 334699999999999999999987 999999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEcCCCccce
Q psy2470 485 AETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 485 AergldIp~V~~VId~g~~k~~ 506 (858)
-..|||-|+|++||.-.+||..
T Consensus 377 fgmgidkpdvrfvihhsl~ksi 398 (695)
T KOG0353|consen 377 FGMGIDKPDVRFVIHHSLPKSI 398 (695)
T ss_pred ecccCCCCCeeEEEecccchhH
Confidence 9999999999999996555543
|
|
| >KOG0950|consensus | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.5e-11 Score=142.69 Aligned_cols=114 Identities=15% Similarity=0.187 Sum_probs=91.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCC-------C------------------------CcceEEEeccCCCCHHHHHHh
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQR-------E------------------------DLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~-------~------------------------~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++|||||++..|+.++..+.+....+ + .-.+.+...|+|++.++|+-+
T Consensus 461 ~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~i 540 (1008)
T KOG0950|consen 461 SSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREII 540 (1008)
T ss_pred CeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHH
Confidence 359999999999999997765321000 0 112346678999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEE
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYR 544 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~r 544 (858)
...|++|..+|++||+..+.|++.|..+++|-.-+ .| ....+..+|.|++|||||+|- |.++-
T Consensus 541 E~afr~g~i~vl~aTSTlaaGVNLPArRVIiraP~---------~g-----~~~l~~~~YkQM~GRAGR~gidT~GdsiL 606 (1008)
T KOG0950|consen 541 EAAFREGNIFVLVATSTLAAGVNLPARRVIIRAPY---------VG-----REFLTRLEYKQMVGRAGRTGIDTLGDSIL 606 (1008)
T ss_pred HHHHHhcCeEEEEecchhhccCcCCcceeEEeCCc---------cc-----cchhhhhhHHhhhhhhhhcccccCcceEE
Confidence 99999999999999999999999999999997321 12 145678899999999999985 99998
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
.+
T Consensus 607 I~ 608 (1008)
T KOG0950|consen 607 II 608 (1008)
T ss_pred Ee
Confidence 88
|
|
| >COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5e-11 Score=145.17 Aligned_cols=102 Identities=24% Similarity=0.277 Sum_probs=84.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC----CCCCcEEEEEecCcccccCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP----TPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~----f~~g~~kVlvATdvAergldIp 492 (858)
..++++|-+||...+.++++.|+.. +..+..+||.+....|.+..+. |+.+.-.|+|||-|.|-|+||+
T Consensus 439 ~~~kvlvI~NTV~~Aie~Y~~Lk~~-------~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEagvDid 511 (733)
T COG1203 439 EGKKVLVIVNTVDRAIELYEKLKEK-------GPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQVIEAGVDID 511 (733)
T ss_pred cCCcEEEEEecHHHHHHHHHHHHhc-------CCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEeeEEEEEeccc
Confidence 4689999999999999999999966 2379999999999999988763 2456778999999999999985
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC--C-ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR--S-GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~-G~~~rL~ 546 (858)
.+++|= .+.+..+.+||+||.+|.| . |..|-.-
T Consensus 512 -fd~mIT--------------------e~aPidSLIQR~GRv~R~g~~~~~~~~v~~ 547 (733)
T COG1203 512 -FDVLIT--------------------ELAPIDSLIQRAGRVNRHGKKENGKIYVYN 547 (733)
T ss_pred -cCeeee--------------------cCCCHHHHHHHHHHHhhcccccCCceeEee
Confidence 566663 4567788999999999999 3 6666544
|
|
| >smart00490 HELICc helicase superfamily c-terminal domain | Back alignment and domain information |
|---|
Probab=99.25 E-value=6.7e-12 Score=108.80 Aligned_cols=81 Identities=32% Similarity=0.585 Sum_probs=72.6
Q ss_pred HHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCC
Q psy2470 433 HIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNT 512 (858)
Q Consensus 433 ~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~ 512 (858)
.+++.|+.. ++.+..+||++++++|..+++.|.+|..+|+++|+++++|+|+|++++||. ++
T Consensus 2 ~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~--------~~--- 63 (82)
T smart00490 2 ELAELLKEL-------GIKVARLHGGLSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVII--------YD--- 63 (82)
T ss_pred HHHHHHHHC-------CCeEEEEECCCCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEE--------eC---
Confidence 355666655 788999999999999999999999999999999999999999999999999 44
Q ss_pred CCCcceeeecCHhhHHHhhcccCCCC
Q psy2470 513 LTNSLVVVPISKASAVQRAGRAGRVR 538 (858)
Q Consensus 513 g~~~l~~~pis~~~~~qR~GRaGR~g 538 (858)
.|.+...+.||+||+||.|
T Consensus 64 -------~~~~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 64 -------LPWSPASYIQRIGRAGRAG 82 (82)
T ss_pred -------CCCCHHHHHHhhcccccCC
Confidence 3788999999999999975
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=99.24 E-value=5.5e-12 Score=115.33 Aligned_cols=92 Identities=30% Similarity=0.451 Sum_probs=68.0
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|++.|..+|++ + +++. +| ++|+.++.||++|+++++ ++. +
T Consensus 2 A~~~L~~Lgal-----d-~~~~---lT-----~lG~~~~~lPl~p~~a~~------------------------Ll~--~ 41 (102)
T PF04408_consen 2 ALELLKSLGAL-----D-ENGN---LT-----PLGRKMSQLPLDPRLAKM------------------------LLY--G 41 (102)
T ss_dssp HHHHHHHTTSB-------TTS----B------HHHHHHTTSSS-HHHHHH------------------------HHH--H
T ss_pred HHHHHHHCCCC-----C-CCCC---cC-----HHHHHHHHCCCchHhHhH------------------------hhh--c
Confidence 68899999999 6 5555 89 999999999999999999 888 8
Q ss_pred cccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhcc---------ccCCCchhhHH
Q psy2470 699 RDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNF---------EVEQGDLLTLL 750 (858)
Q Consensus 699 ~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f---------~~~~gDhltlL 750 (858)
..++|.+++++|+|+|+++++|..+.+++...+....+++| .+..|||+|+|
T Consensus 42 ~~~~~~~~~~~iaa~ls~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sDhltlL 102 (102)
T PF04408_consen 42 IQFGCLDEALIIAAILSVRSPFINPDDKEENAEQDNAKKKFRIKQARKKFSDDESDHLTLL 102 (102)
T ss_dssp HHCT-HHHHHHHHHHHTSS--B---CCGHHHHHH--HHHTT----------BTTBHHHHHH
T ss_pred cccccHHHHHHHHHHHcCCCcccCccHHHHHHHHHHHHHHhhhhhcccccCCCCCCHHhcC
Confidence 89999999999999999999999987766444443344444 67889999986
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >PHA02653 RNA helicase NPH-II; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.5e-11 Score=144.58 Aligned_cols=96 Identities=18% Similarity=0.225 Sum_probs=83.0
Q ss_pred ccceeeccCHHHHhccccCCCcccccCC---hhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCc
Q psy2470 41 SRKFSRLYTEASFSQLNECTPPEMQRTE---LSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNL 117 (858)
Q Consensus 41 ~g~c~rLy~~~~~~~~~~~~~pei~r~~---l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~l 117 (858)
+|+||||||++++ .| |+|.+ |+++||++|+||++++ ++.|+|||+.+++.+|++.|+.+||+|+ +|
T Consensus 504 ~G~c~rLyt~~~~-------~p-I~ri~~~~L~~~vL~lk~~g~~~~-~~~~ldpP~~~~l~~A~~~L~~lga~~~--~l 572 (675)
T PHA02653 504 PGTYVYFYDLDLL-------KP-IKRIDSEFLHNYILYAKYFNLTLP-EDLFVIPSNLDRLRKTEEYIDSFNISIE--KW 572 (675)
T ss_pred CCeEEEEECHHHh-------HH-HHHHhHHHHHHHHHHHHHcCCCCc-ccccCCCCCHHHHHHHHHHHHHcCCCch--hh
Confidence 8999999999975 24 66666 8999999999999655 5669999999999999999999998866 79
Q ss_pred chHH--HhhhhcCCCCchhhhHHhhcccccchHHHHHH
Q psy2470 118 TKPV--GETMAEMPLHPIHAKVLLSSGSVLDSAVEILL 153 (858)
Q Consensus 118 t~~l--G~~ma~lp~~p~~~~~l~~s~s~~~~~~~~~~ 153 (858)
| .| |+.|+.+ +++|.++. |.+.+.+++.++
T Consensus 573 ~-~l~~~~~~~~~----~~~k~~~~-g~~~~~~l~~~~ 604 (675)
T PHA02653 573 Y-EILSNYYVNML----EYAKIYVK-GGILAEALDNFE 604 (675)
T ss_pred h-hhhccccHHHH----HHhHHHhc-ccHhHHHHhhhh
Confidence 9 59 9999999 99999988 777777766554
|
|
| >KOG0953|consensus | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.4e-09 Score=119.39 Aligned_cols=128 Identities=19% Similarity=0.180 Sum_probs=98.2
Q ss_pred HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCC--CCCcEEEEEecCcccc
Q psy2470 410 IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPT--PRAMRKIVIATNIAET 487 (858)
Q Consensus 410 ~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f--~~g~~kVlvATdvAer 487 (858)
..-+.+..+|+++|=+ ++++|-.+...+++. .+..+..+||+||++-|..--..| +++..+|+||||-...
T Consensus 349 ~~sl~nlk~GDCvV~F-Skk~I~~~k~kIE~~------g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGM 421 (700)
T KOG0953|consen 349 LGSLSNLKPGDCVVAF-SKKDIFTVKKKIEKA------GNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGM 421 (700)
T ss_pred hhhhccCCCCCeEEEe-ehhhHHHHHHHHHHh------cCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeeccccc
Confidence 3334556689988866 467788899999876 255689999999999765443334 4589999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC----ceEEEeh-hhHhhhhh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS----GHVYRKN-FMYNRLFI 554 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~----G~~~rL~-~~~~~l~~ 554 (858)
|+++ +|+-||=+.+.| |+ | -.+.+++..++.|=+|||||.|. |.+-+|+ ++...+.+
T Consensus 422 GLNL-~IrRiiF~sl~K---ys---g---~e~~~it~sqikQIAGRAGRf~s~~~~G~vTtl~~eDL~~L~~ 483 (700)
T KOG0953|consen 422 GLNL-NIRRIIFYSLIK---YS---G---RETEDITVSQIKQIAGRAGRFGSKYPQGEVTTLHSEDLKLLKR 483 (700)
T ss_pred cccc-ceeEEEEeeccc---CC---c---ccceeccHHHHHHHhhcccccccCCcCceEEEeeHhhHHHHHH
Confidence 9998 788888644433 54 2 23478999999999999999985 9999999 88776654
|
|
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.5e-09 Score=128.48 Aligned_cols=133 Identities=16% Similarity=0.195 Sum_probs=91.4
Q ss_pred CCceEEEEecccCH-----HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 349 TQLKLIISSATVDA-----EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 349 ~~~q~il~SAT~~~-----~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
+.-++++.|||... ..|.+.++-...+. . . ...++...|... +-. ..+..+.+.... ..||
T Consensus 275 k~g~LvvsSATg~~rg~R~~LfReLlgFevG~~--~---~-~LRNIvD~y~~~---~~~----e~~~elvk~lG~-GgLI 340 (1187)
T COG1110 275 KLGILVVSSATGKPRGSRLKLFRELLGFEVGSG--G---E-GLRNIVDIYVES---ESL----EKVVELVKKLGD-GGLI 340 (1187)
T ss_pred CCceEEEeeccCCCCCchHHHHHHHhCCccCcc--c---h-hhhheeeeeccC---ccH----HHHHHHHHHhCC-CeEE
Confidence 45688999999933 34555554211100 0 0 012333344443 222 233344444434 3799
Q ss_pred EcCC---HHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcccccCCCC-Cee
Q psy2470 424 FVIG---LEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAETSITIP-GIV 495 (858)
Q Consensus 424 Fl~t---~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAergldIp-~V~ 495 (858)
|+|. ++.++.+++.|+.+ |+.+...|+. ..+.++.|..|+..|+|. ..++-||||.| -|+
T Consensus 341 fV~~d~G~e~aeel~e~Lr~~-------Gi~a~~~~a~-----~~~~le~F~~GeidvLVGvAsyYG~lVRGlDLP~rir 408 (1187)
T COG1110 341 FVPIDYGREKAEELAEYLRSH-------GINAELIHAE-----KEEALEDFEEGEVDVLVGVASYYGVLVRGLDLPHRIR 408 (1187)
T ss_pred EEEcHHhHHHHHHHHHHHHhc-------CceEEEeecc-----chhhhhhhccCceeEEEEecccccceeecCCchhhee
Confidence 9999 99999999999988 9999999984 267899999999999986 47899999999 578
Q ss_pred EEEcCCCcccee
Q psy2470 496 YVIDPGFVKARW 507 (858)
Q Consensus 496 ~VId~g~~k~~~ 507 (858)
|+|=.|.||.+.
T Consensus 409 YaIF~GvPk~rf 420 (1187)
T COG1110 409 YAVFYGVPKFRF 420 (1187)
T ss_pred EEEEecCCceee
Confidence 999999997653
|
|
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Probab=98.93 E-value=9.4e-10 Score=98.57 Aligned_cols=89 Identities=38% Similarity=0.524 Sum_probs=75.1
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|.+.|..+|++ + +++. +| ++|+.|++||+||+++++ ++. +
T Consensus 2 A~~~L~~LgAl-----d-~~~~---lT-----~lG~~m~~lPl~Prla~~------------------------Ll~--a 41 (92)
T smart00847 2 ALELLYELGAL-----D-DDGR---LT-----PLGRKMAELPLDPRLAKM------------------------LLA--A 41 (92)
T ss_pred HHHHHHHCCCc-----C-CCCC---cC-----HHHHHHHHCCCChHHHHH------------------------HHH--H
Confidence 67899999999 6 4444 88 999999999999999999 888 6
Q ss_pred ccc-CCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccC-CCchhhHH
Q psy2470 699 RDF-ECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVE-QGDLLTLL 750 (858)
Q Consensus 699 ~~~-~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~-~gDhltlL 750 (858)
..+ +|.+++++|+|++++.++|..+ .. ..+....+..|.+. .|||++++
T Consensus 42 ~~~~~c~~~~~~i~a~ls~~~~~~~~-~~--~~~~~~~~~~~~~~~~~D~~~~l 92 (92)
T smart00847 42 AELFGCLDEILTIAAMLSVGDPFPRP-EK--RAEADAARRRFASGRESDHLTLL 92 (92)
T ss_pred HhhcCcHHHHHHHHHHhcCCCCcCCc-hH--HHHHHHHHHHccCCCCCChhhhC
Confidence 677 8999999999999999988766 22 25666678888887 89999874
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. |
| >KOG0921|consensus | Back alignment and domain information |
|---|
Probab=98.88 E-value=6e-11 Score=137.25 Aligned_cols=341 Identities=6% Similarity=-0.153 Sum_probs=234.2
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
.+.|.+..++.... +..+-+.|||||| ...|+.... +.... .+..-+-+++-+|+++-|...+.+
T Consensus 409 q~aq~iLe~~~~ns---~g~~~na~v~qpr-------risaisiae-rva~e----r~e~~g~tvgy~vRf~Sa~prpyg 473 (1282)
T KOG0921|consen 409 QVAQFLLESFLENS---NGASFNAVVSQPR-------RISAISLAE-RVANE----RGEEVGETCGYNVRFDSATPRPYG 473 (1282)
T ss_pred HHHHHHHHHHhhcc---ccccccceecccc-------ccchHHHHH-HHHHh----hHHhhccccccccccccccccccc
Confidence 45555555553322 4456689999999 344433211 11111 011122357889999999999888
Q ss_pred HHHHhCCcCccEeeeeeEEEeccceee-cceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhhhhHHH
Q psy2470 266 FLTEMGCRMDFEYISRGYMFRKGRMKI-LVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVIGEDMK 337 (858)
Q Consensus 266 v~~e~g~~~g~~~~~vG~~vr~~~~~~-~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk 337 (858)
++-+.++.++.. ++|..+++.... ...-+.++|.|-++. +..+- .+.|.+| +.+| ||++.-++.
T Consensus 474 ~i~fctvgvllr---~~e~glrg~sh~i~deiherdv~~dfll~~lr~m-~~ty~dl~v~lmsatId----Td~f~~~f~ 545 (1282)
T KOG0921|consen 474 SIMFCTVGVLLR---MMENGLRGISHVIIDEIHERDVDTDFVLIVLREM-ISTYRDLRVVLMSATID----TDLFTNFFS 545 (1282)
T ss_pred ceeeeccchhhh---hhhhcccccccccchhhhhhccchHHHHHHHHhh-hccchhhhhhhhhcccc----hhhhhhhhc
Confidence 877777777777 777666554322 334455789999988 43332 2223222 9999 999988887
Q ss_pred HHHHHhcccCCCCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEe-----------------------
Q psy2470 338 AFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYS----------------------- 394 (858)
Q Consensus 338 ~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~----------------------- 394 (858)
++. |+.++|+|++++.|..++- ..+...++++.++++.++.
T Consensus 546 ~~p-----------~~~~~grt~pvq~F~led~-----~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~ 609 (1282)
T KOG0921|consen 546 SIP-----------DVTVHGRTFPVQSFFLEDI-----IQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSY 609 (1282)
T ss_pred ccc-----------ceeeccccccHHHHHHHHh-----hhhhhccCCCcCccchhhcccccCchhhhcccccccccChhh
Confidence 654 6699999999998876655 3566666665554432211
Q ss_pred -c------------CCccchHHHHHHHH------HHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec
Q psy2470 395 -N------------DPVVNYVQGVVDTA------IKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM 455 (858)
Q Consensus 395 -~------------~~~~~~~~~~~~~l------~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L 455 (858)
. .......++....+ -.++.-.+++..|+|++++--+......+++..-+ +.....+.+.
T Consensus 610 ~~~~~~am~~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~il-p~Hsq~~~~e 688 (1282)
T KOG0921|consen 610 NESTRTAMSRLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEIL-PLHSQLTSQE 688 (1282)
T ss_pred cchhhhhhhcchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccc-cchhhcccHh
Confidence 0 01123333332222 12333456889999999999888888888754211 1225678889
Q ss_pred cCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccC
Q psy2470 456 HGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAG 535 (858)
Q Consensus 456 Hg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaG 535 (858)
|......++..+++....+.+++...|+.+++.+.+-.+.+|++++-.+.+.+-...-++...+.|.+.-.-.||.||++
T Consensus 689 qrkvf~~~p~gv~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~G~~f 768 (1282)
T KOG0921|consen 689 QRKVFEPVPEGVTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRPGFCF 768 (1282)
T ss_pred hhhccCcccccccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecccccc
Confidence 99999999999999999999999999999999999999999999998887775555556666778888888899999999
Q ss_pred CCCCceEEEeh--hhHhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 536 RVRSGHVYRKN--FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 536 R~g~G~~~rL~--~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
|...+.||.+. ..+.+|.. + +. ||+.++.+.
T Consensus 769 ~lcs~arF~~l~~~~t~em~r-----~---pl---hemalTikl 801 (1282)
T KOG0921|consen 769 HLCSRARFEALEDHGTAEMFR-----T---PL---HEIALTIKL 801 (1282)
T ss_pred cccHHHHHHHHHhcCcHhhhc-----C---cc---HHHHhhHHH
Confidence 99999999988 44566766 5 66 888777654
|
|
| >COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.81 E-value=4e-08 Score=117.01 Aligned_cols=293 Identities=15% Similarity=0.117 Sum_probs=163.3
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS 280 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~ 280 (858)
+|=+. |-||||||-+|+.+.- .++. ...++|++.|--.+.-|+.+++...+|.+++.-..+
T Consensus 219 ~~Ll~--GvTGSGKTEvYl~~i~---------~~L~--------~GkqvLvLVPEI~Ltpq~~~rf~~rFg~~v~vlHS~ 279 (730)
T COG1198 219 PFLLD--GVTGSGKTEVYLEAIA---------KVLA--------QGKQVLVLVPEIALTPQLLARFKARFGAKVAVLHSG 279 (730)
T ss_pred ceeEe--CCCCCcHHHHHHHHHH---------HHHH--------cCCEEEEEeccccchHHHHHHHHHHhCCChhhhccc
Confidence 55555 9999999933332211 1121 123689999988888999999988889877655444
Q ss_pred eeEEEeccce---eecceeEEEeecCccccCCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 281 RGYMFRKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 281 vG~~vr~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+-+.|.+.- ..+..+|+++|=--+.- -+.+...| -+.-+ .|-..--.+++. .++ ..-.+
T Consensus 280 Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~-----Pf~~LGLIIvDEEHD~sYKq---~~~prYhARdvA-~~R-a~~~~ 349 (730)
T COG1198 280 LSPGERYRVWRRARRGEARVVIGTRSALFL-----PFKNLGLIIVDEEHDSSYKQ---EDGPRYHARDVA-VLR-AKKEN 349 (730)
T ss_pred CChHHHHHHHHHHhcCCceEEEEechhhcC-----chhhccEEEEeccccccccC---CcCCCcCHHHHH-HHH-HHHhC
Confidence 4433333221 22557999998554433 11222222 11110 011111122222 000 11246
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeec---ceeEEEecC--Cccc----hHHHHHHHHHHHHhhCCCCCE
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILSVKGHLY---PVSVYYSND--PVVN----YVQGVVDTAIKIHESMPVGDI 421 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~--~~~~----~~~~~~~~l~~i~~~~~~g~i 421 (858)
..+||=|||.+.|.+.+-... .-..+.+..|.. +.++..... ...+ .-...++.+.+-+. .+.++
T Consensus 350 ~pvvLgSATPSLES~~~~~~g----~y~~~~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~Ll~~i~~~l~--~geQ~ 423 (730)
T COG1198 350 APVVLGSATPSLESYANAESG----KYKLLRLTNRAGRARLPRVEIIDMRKEPLETGRSLSPALLEAIRKTLE--RGEQV 423 (730)
T ss_pred CCEEEecCCCCHHHHHhhhcC----ceEEEEccccccccCCCcceEEeccccccccCccCCHHHHHHHHHHHh--cCCeE
Confidence 789999999988877665321 112333333322 222222211 1110 11222333322222 25677
Q ss_pred EEEcCCHH------------------------------------------------------------HHHHHHHHHHHh
Q psy2470 422 LAFVIGLE------------------------------------------------------------QIEHIIGILKQY 441 (858)
Q Consensus 422 LVFl~t~~------------------------------------------------------------~i~~l~~~L~~~ 441 (858)
|+|+|.+. .++++.+.|.+.
T Consensus 424 llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~~G~GterieeeL~~~ 503 (730)
T COG1198 424 LLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRAVGPGTERIEEELKRL 503 (730)
T ss_pred EEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEEecccHHHHHHHHHHH
Confidence 88874322 334445555544
Q ss_pred ccCCCCcceEEEeccCCCCHHH--HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE--c--CCCccceeccCCCCCC
Q psy2470 442 HNQREDLKLLILPMHGSLPNNE--QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI--D--PGFVKARWFNPNTLTN 515 (858)
Q Consensus 442 ~~~~~~~~~~v~~LHg~l~q~~--r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI--d--~g~~k~~~yd~~~g~~ 515 (858)
-|+.++.-+-++.+... =...++.|.+|+..|||-|-+.+-|.|.|+|+.|. | +++ +.+
T Consensus 504 -----FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~ge~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L-----~~~----- 568 (730)
T COG1198 504 -----FPGARIIRIDSDTTRRKGALEDLLDQFANGEADILIGTQMIAKGHDFPNVTLVGVLDADTGL-----GSP----- 568 (730)
T ss_pred -----CCCCcEEEEccccccchhhHHHHHHHHhCCCCCeeecchhhhcCCCcccceEEEEEechhhh-----cCC-----
Confidence 35778888888766643 45678899999999999999999999999999876 4 333 221
Q ss_pred cceeeecCHhhHHHhhcccCCCC-CceEE
Q psy2470 516 SLVVVPISKASAVQRAGRAGRVR-SGHVY 543 (858)
Q Consensus 516 ~l~~~pis~~~~~qR~GRaGR~g-~G~~~ 543 (858)
++.-.=-.-.-+.|=+|||||.+ +|.++
T Consensus 569 DfRA~Er~fqll~QvaGRAgR~~~~G~Vv 597 (730)
T COG1198 569 DFRASERTFQLLMQVAGRAGRAGKPGEVV 597 (730)
T ss_pred CcchHHHHHHHHHHHHhhhccCCCCCeEE
Confidence 11111122344778999999984 47776
|
|
| >PRK12326 preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.8e-08 Score=116.58 Aligned_cols=156 Identities=19% Similarity=0.208 Sum_probs=97.5
Q ss_pred EEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 353 LIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 353 ~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
+-.|+.|. ..++|.+.++ -+++.||.. .|+. .+|.. ..++..+.++.+...|.. +.+|||.
T Consensus 365 LsGMTGTa~t~~~Ef~~iY~------l~Vv~IPtn-kp~~R~d~~d~iy~t--~~~k~~Aii~ei~~~~~~--GrPVLVg 433 (764)
T PRK12326 365 VCGMTGTAVAAGEQLRQFYD------LGVSVIPPN-KPNIREDEADRVYAT--AAEKNDAIVEHIAEVHET--GQPVLVG 433 (764)
T ss_pred heeecCCChhHHHHHHHHhC------CcEEECCCC-CCceeecCCCceEeC--HHHHHHHHHHHHHHHHHc--CCCEEEE
Confidence 34466665 3445555554 456666643 2222 12221 123344555556666554 5689999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC------------
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP------------ 492 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp------------ 492 (858)
+.+-++.+.+++.|.+. +++...|++.-...|-.-+-++-++| .|.||||.|.||-||.
T Consensus 434 t~sI~~SE~ls~~L~~~-------gI~h~vLNAk~~~~EA~IIa~AG~~g--aVTIATNMAGRGTDIkLg~~~~~~~~~V 504 (764)
T PRK12326 434 THDVAESEELAERLRAA-------GVPAVVLNAKNDAEEARIIAEAGKYG--AVTVSTQMAGRGTDIRLGGSDEADRDRV 504 (764)
T ss_pred eCCHHHHHHHHHHHHhC-------CCcceeeccCchHhHHHHHHhcCCCC--cEEEEecCCCCccCeecCCCcccchHHH
Confidence 99999999999999977 77777788764444432333333333 5889999999999986
Q ss_pred ---CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 ---GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ---~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|==|||=+.+ +.|+--=.|=.|||||.|. |.+--+.
T Consensus 505 ~~~GGLhVIgTer------------------heSrRID~QLrGRaGRQGDpGss~f~l 544 (764)
T PRK12326 505 AELGGLHVIGTGR------------------HRSERLDNQLRGRAGRQGDPGSSVFFV 544 (764)
T ss_pred HHcCCcEEEeccC------------------CchHHHHHHHhcccccCCCCCceeEEE
Confidence 1125555443 3444444688999999996 7654433
|
|
| >PF04408 HA2: Helicase associated domain (HA2); InterPro: IPR007502 This presumed domain is about 90 amino acid residues in length | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.4e-09 Score=97.93 Aligned_cols=59 Identities=44% Similarity=0.526 Sum_probs=42.1
Q ss_pred HHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhh
Q psy2470 100 VALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGL 159 (858)
Q Consensus 100 ~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~ 159 (858)
+|++.|+.+||+|++|+|| ++|+.|+.||++|++|+||+.+..+. ..+++++|.++.+.
T Consensus 1 ~A~~~L~~Lgald~~~~lT-~lG~~~~~lPl~p~~a~~Ll~~~~~~~~~~~~~iaa~ls~~~~f~~~~~~ 69 (102)
T PF04408_consen 1 KALELLKSLGALDENGNLT-PLGRKMSQLPLDPRLAKMLLYGIQFGCLDEALIIAAILSVRSPFINPDDK 69 (102)
T ss_dssp -HHHHHHHTTSB-TTS-B--HHHHHHTTSSS-HHHHHHHHHHHHCT-HHHHHHHHHHHTSS--B---CCG
T ss_pred CHHHHHHHCCCCCCCCCcC-HHHHHHHHCCCchHhHhHhhhccccccHHHHHHHHHHHcCCCcccCccHH
Confidence 5899999999999999999 89999999999999999999877765 34457777776433
|
It is found as a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding.; GO: 0004386 helicase activity; PDB: 3I4U_A 2XAU_B 3KX2_B. |
| >smart00847 HA2 Helicase associated domain (HA2) Add an annotation | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.2e-08 Score=91.45 Aligned_cols=44 Identities=57% Similarity=0.939 Sum_probs=41.1
Q ss_pred HHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 100 VALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 100 ~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+|++.|+.+||+|++|+|| ++|++|++||++|++|+||+.+..+
T Consensus 1 ~A~~~L~~LgAld~~~~lT-~lG~~m~~lPl~Prla~~Ll~a~~~ 44 (92)
T smart00847 1 AALELLYELGALDDDGRLT-PLGRKMAELPLDPRLAKMLLAAAEL 44 (92)
T ss_pred CHHHHHHHCCCcCCCCCcC-HHHHHHHHCCCChHHHHHHHHHHhh
Confidence 4889999999999999999 7999999999999999999987765
|
This presumed domain is about 90 amino acid residues in length. It is found is a diverse set of RNA helicases. Its function is unknown, however it seems likely to be involved in nucleic acid binding. |
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=98.59 E-value=8.4e-08 Score=98.77 Aligned_cols=139 Identities=9% Similarity=-0.008 Sum_probs=75.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||+||| ..+.+|.+.. +.... ......+++++|+++++.|.++.+.+ ++...+.. ++.
T Consensus 39 ~li~~~TG~GKT-----~~~~~~~l~~----~~~~~---~~~~~~viii~p~~~L~~q~~~~~~~-~~~~~~~~---~~~ 102 (203)
T cd00268 39 VIGQAQTGSGKT-----AAFLIPILEK----LDPSP---KKDGPQALILAPTRELALQIAEVARK-LGKHTNLK---VVV 102 (203)
T ss_pred EEEECCCCCcHH-----HHHHHHHHHH----HHhhc---ccCCceEEEEcCCHHHHHHHHHHHHH-HhccCCce---EEE
Confidence 345799999999 3333332221 11110 01234689999999999999876643 32222332 221
Q ss_pred EEeccc------eeecceeEEEeecCcccc-CCCc-cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 284 MFRKGR------MKILVSKIFKMSQGKPSD-SGVE-PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 284 ~vr~~~------~~~~~t~I~v~TpGrLl~-~~~~-~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
..+... ......+|+|+||+.+++ +.+. ..+..+..+ .+.+ .++...+...+. ..++
T Consensus 103 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~----~~~~~~~~~~~~-----~l~~ 173 (203)
T cd00268 103 IYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLD----MGFEDQIREILK-----LLPK 173 (203)
T ss_pred EECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhc----cChHHHHHHHHH-----hCCc
Confidence 111111 111357899999999988 4333 334444444 2223 222222222222 3456
Q ss_pred CceEEEEecccC--HHHHHH
Q psy2470 350 QLKLIISSATVD--AEEICQ 367 (858)
Q Consensus 350 ~~q~il~SAT~~--~~~~~~ 367 (858)
+.|+++||||+. ++.+..
T Consensus 174 ~~~~~~~SAT~~~~~~~~~~ 193 (203)
T cd00268 174 DRQTLLFSATMPKEVRDLAR 193 (203)
T ss_pred ccEEEEEeccCCHHHHHHHH
Confidence 899999999994 444443
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family | Back alignment and domain information |
|---|
Probab=98.57 E-value=6.3e-07 Score=108.51 Aligned_cols=101 Identities=15% Similarity=0.154 Sum_probs=73.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHH---------------------HHHHhcCCCCC-Cc
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNN---------------------EQIKVFRPTPR-AM 475 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~---------------------~r~~v~~~f~~-g~ 475 (858)
.++.+||+.+++.+..+.+.|.+.... ..+...+.++++.+.+ ....+.++|++ +.
T Consensus 514 ~~kamvv~~sr~~a~~~~~~l~~~~~~--~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~ 591 (667)
T TIGR00348 514 KFKAMVVAISRYACVEEKNALDEELNE--KFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEEN 591 (667)
T ss_pred cCceeEEEecHHHHHHHHHHHHhhccc--ccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCC
Confidence 489999999999999999998765221 0023455555543332 12356777765 67
Q ss_pred EEEEEecCcccccCCCCCeeEEE-cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCC-CCc
Q psy2470 476 RKIVIATNIAETSITIPGIVYVI-DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRV-RSG 540 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VI-d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~-g~G 540 (858)
.+|||.+|..-+|+|.|.+..++ | .|......+|-+||+-|. .+|
T Consensus 592 ~~ilIVvdmllTGFDaP~l~tLyld--------------------Kplk~h~LlQai~R~nR~~~~~ 638 (667)
T TIGR00348 592 PKLLIVVDMLLTGFDAPILNTLYLD--------------------KPLKYHGLLQAIARTNRIDGKD 638 (667)
T ss_pred ceEEEEEcccccccCCCccceEEEe--------------------ccccccHHHHHHHHhccccCCC
Confidence 89999999999999999998766 5 455555688999999994 443
|
Members of this family are assumed to differ from each other in DNA site specificity. |
| >PRK13103 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.2e-07 Score=111.66 Aligned_cols=81 Identities=16% Similarity=0.140 Sum_probs=57.2
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
+..+.++.+...+.. +.+|||-+.+-+..+.+++.|.+. ++..-.|.+.-...|-.-+-++-++| .|.|
T Consensus 434 K~~Ai~~ei~~~~~~--GrPVLVGT~SVe~SE~ls~~L~~~-------gi~h~VLNAk~~~~EA~IIa~AG~~G--aVTI 502 (913)
T PRK13103 434 KYAAIITDIKECMAL--GRPVLVGTATIETSEHMSNLLKKE-------GIEHKVLNAKYHEKEAEIIAQAGRPG--ALTI 502 (913)
T ss_pred HHHHHHHHHHHHHhC--CCCEEEEeCCHHHHHHHHHHHHHc-------CCcHHHhccccchhHHHHHHcCCCCC--cEEE
Confidence 344555556666654 568999999999999999999976 66555566654444433333333333 5889
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||.|.||-||.
T Consensus 503 ATNMAGRGTDIk 514 (913)
T PRK13103 503 ATNMAGRGTDIL 514 (913)
T ss_pred eccCCCCCCCEe
Confidence 999999999984
|
|
| >PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases | Back alignment and domain information |
|---|
Probab=98.55 E-value=2e-08 Score=99.86 Aligned_cols=136 Identities=10% Similarity=0.074 Sum_probs=76.2
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+..... + ....++++.|+++++.|.++++.+..+. .+.. +..
T Consensus 17 ~li~aptGsGKT-----~~~~~~~l~~~~~---------~-~~~~~lii~P~~~l~~q~~~~~~~~~~~-~~~~---~~~ 77 (169)
T PF00270_consen 17 VLISAPTGSGKT-----LAYILPALNRLQE---------G-KDARVLIIVPTRALAEQQFERLRKFFSN-TNVR---VVL 77 (169)
T ss_dssp EEEECSTTSSHH-----HHHHHHHHHHHHT---------T-SSSEEEEEESSHHHHHHHHHHHHHHTTT-TTSS---EEE
T ss_pred EEEECCCCCccH-----HHHHHHHHhhhcc---------C-CCceEEEEeecccccccccccccccccc-cccc---ccc
Confidence 446799999999 4444443321110 1 1125799999999999999988665554 2222 221
Q ss_pred EEeccc-------eeecceeEEEeecCcccc-CCC-ccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 284 MFRKGR-------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 284 ~vr~~~-------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
..+... ......+|+|+||++|++ +.. ...+.++.++ ..+. .+.....++.+...++ ..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~----~~~~~~~~~~i~~~~~--~~~ 151 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLS----DETFRAMLKSILRRLK--RFK 151 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHH----HTTHHHHHHHHHHHSH--TTT
T ss_pred ccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccc----cccHHHHHHHHHHHhc--CCC
Confidence 111111 111358999999999999 433 1233445554 2222 1111122333332221 123
Q ss_pred CceEEEEecccCHHHH
Q psy2470 350 QLKLIISSATVDAEEI 365 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~ 365 (858)
+.|+++||||+. ..+
T Consensus 152 ~~~~i~~SAT~~-~~~ 166 (169)
T PF00270_consen 152 NIQIILLSATLP-SNV 166 (169)
T ss_dssp TSEEEEEESSST-HHH
T ss_pred CCcEEEEeeCCC-hhH
Confidence 689999999997 443
|
Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A .... |
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=6.9e-07 Score=99.93 Aligned_cols=168 Identities=20% Similarity=0.204 Sum_probs=119.5
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecc-eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYP-VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~-v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
-.|+|..|||....++..-=+.. --.++.-.|-..| +++. +....++..+..+..-.. ....+||-+-|+
T Consensus 386 ~~q~i~VSATPg~~E~e~s~~~v---veQiIRPTGLlDP~ievR----p~~~QvdDL~~EI~~r~~--~~eRvLVTtLTK 456 (663)
T COG0556 386 IPQTIYVSATPGDYELEQSGGNV---VEQIIRPTGLLDPEIEVR----PTKGQVDDLLSEIRKRVA--KNERVLVTTLTK 456 (663)
T ss_pred cCCEEEEECCCChHHHHhccCce---eEEeecCCCCCCCceeee----cCCCcHHHHHHHHHHHHh--cCCeEEEEeehH
Confidence 36999999999554444321100 0011211222222 1221 223334444444443322 246899999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
+.+|.+.+.|.+. |+++--|||++..-||..++...+.|...|||--|++--|||||.|+.|-=.+ -
T Consensus 457 kmAEdLT~Yl~e~-------gikv~YlHSdidTlER~eIirdLR~G~~DvLVGINLLREGLDiPEVsLVAIlD------A 523 (663)
T COG0556 457 KMAEDLTEYLKEL-------GIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGLDLPEVSLVAILD------A 523 (663)
T ss_pred HHHHHHHHHHHhc-------CceEEeeeccchHHHHHHHHHHHhcCCccEEEeehhhhccCCCcceeEEEEee------c
Confidence 9999999999988 99999999999999999999999999999999999999999999999997411 1
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
| .-| ..-|-.+.+|=+|||+|.-.|.++-..
T Consensus 524 D-KeG------FLRse~SLIQtIGRAARN~~GkvIlYA 554 (663)
T COG0556 524 D-KEG------FLRSERSLIQTIGRAARNVNGKVILYA 554 (663)
T ss_pred C-ccc------cccccchHHHHHHHHhhccCCeEEEEc
Confidence 1 123 346777899999999999889988643
|
|
| >CHL00122 secA preprotein translocase subunit SecA; Validated | Back alignment and domain information |
|---|
Probab=98.24 E-value=5.6e-06 Score=99.45 Aligned_cols=79 Identities=24% Similarity=0.315 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCC-C-HHHHHHhcCCCCCCcEEEEE
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSL-P-NNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l-~-q~~r~~v~~~f~~g~~kVlv 480 (858)
.+.++.+...+.. +.+|||-+.+-+..+.+++.|.+. |++.-.|++.- . ..|-.-|-++=++| .|.|
T Consensus 411 ~AI~~ei~~~~~~--grPVLIgT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIA~AG~~G--~VTI 479 (870)
T CHL00122 411 RAIADECLQMHQT--GRPILIGTTTIEKSELLSQLLKEY-------RLPHQLLNAKPENVRRESEIVAQAGRKG--SITI 479 (870)
T ss_pred HHHHHHHHHHHhc--CCCEEEeeCCHHHHHHHHHHHHHc-------CCccceeeCCCccchhHHHHHHhcCCCC--cEEE
Confidence 3445555555543 568999999999999999999977 77777777752 2 33333333333333 5889
Q ss_pred ecCcccccCCCC
Q psy2470 481 ATNIAETSITIP 492 (858)
Q Consensus 481 ATdvAergldIp 492 (858)
|||.|.||-||.
T Consensus 480 ATNMAGRGTDI~ 491 (870)
T CHL00122 480 ATNMAGRGTDII 491 (870)
T ss_pred eccccCCCcCee
Confidence 999999998874
|
|
| >KOG4150|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.7e-06 Score=92.05 Aligned_cols=168 Identities=19% Similarity=0.182 Sum_probs=116.9
Q ss_pred CCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecceeEEEe--cCCc-------cchHHHHHHHHHHHHhhC
Q psy2470 348 RTQLKLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVSVYYS--NDPV-------VNYVQGVVDTAIKIHESM 416 (858)
Q Consensus 348 ~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~--~~~~-------~~~~~~~~~~l~~i~~~~ 416 (858)
...+|++=-|||+ .++...+.|+- +....+.++|....-+.... +... .+++......+.++...
T Consensus 449 ~~~~~~~~~~~~~K~~~~~~~~~~~~---~E~~Li~~DGSPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~~~~i~~- 524 (1034)
T KOG4150|consen 449 SINMGVYDGDTPYKDRTRLRSELANL---SELELVTIDGSPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLFAEMVQH- 524 (1034)
T ss_pred hcCcceEeCCCCcCCHHHHHHHhcCC---cceEEEEecCCCCccceEEEeCCCCCCcchhhhhhHHHHHHHHHHHHHHc-
Confidence 4578999999999 34555566653 24566777776433333222 1111 12222233333444333
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcce--EEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKL--LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~--~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V 494 (858)
.-+.|.||+.++-|+.+....++.... ..+.+ .+..+.||-..++|+++....-.|+.+-|+|||-+|-||||.+.
T Consensus 525 -~~R~IAFC~~R~~CEL~~~~~R~I~~E-T~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG~L 602 (1034)
T KOG4150|consen 525 -GLRCIAFCPSRKLCELVLCLTREILAE-TAPHLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIGHL 602 (1034)
T ss_pred -CCcEEEeccHHHHHHHHHHHHHHHHHH-hhHHHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccccc
Confidence 447899999999998887766543110 01111 24567899999999999888778999999999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
+.|+.+|+ |-|.++..|-.|||||-.+
T Consensus 603 DAVl~~GF------------------P~S~aNl~QQ~GRAGRRNk 629 (1034)
T KOG4150|consen 603 DAVLHLGF------------------PGSIANLWQQAGRAGRRNK 629 (1034)
T ss_pred eeEEEccC------------------chhHHHHHHHhccccccCC
Confidence 99999994 7888999999999999765
|
|
| >PRK12903 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.16 E-value=1e-05 Score=96.74 Aligned_cols=154 Identities=21% Similarity=0.240 Sum_probs=97.4
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ..++|.+.++ -.++.||.. .|+. .+|.. ......+.++.+...+.. +.+|||
T Consensus 363 kLsGMTGTA~te~~Ef~~iY~------l~Vv~IPTn-kP~~R~D~~d~iy~t--~~~K~~Aii~ei~~~~~~--gqPVLV 431 (925)
T PRK12903 363 KLSGMTGTAKTEEQEFIDIYN------MRVNVVPTN-KPVIRKDEPDSIFGT--KHAKWKAVVKEVKRVHKK--GQPILI 431 (925)
T ss_pred hhhccCCCCHHHHHHHHHHhC------CCEEECCCC-CCeeeeeCCCcEEEc--HHHHHHHHHHHHHHHHhc--CCCEEE
Confidence 456788887 3445666554 567777643 2322 12221 122334445555555543 568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCee--------
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIV-------- 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~-------- 495 (858)
.+.+.+..+.+++.|.+. |+..-.|++.-...|-.-|-++=++ -.|.||||.|.||-||.==.
T Consensus 432 gT~SIe~SE~ls~~L~~~-------gi~h~vLNAk~~e~EA~IIa~AG~~--GaVTIATNMAGRGTDI~Lg~~V~~~GGL 502 (925)
T PRK12903 432 GTAQVEDSETLHELLLEA-------NIPHTVLNAKQNAREAEIIAKAGQK--GAITIATNMAGRGTDIKLSKEVLELGGL 502 (925)
T ss_pred EeCcHHHHHHHHHHHHHC-------CCCceeecccchhhHHHHHHhCCCC--CeEEEecccccCCcCccCchhHHHcCCc
Confidence 999999999999999976 6666677775333333333232223 46899999999999997322
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
|||-+.++.. +--=.|-.|||||.|. |.+-
T Consensus 503 hVIgTerheS------------------rRIDnQLrGRaGRQGDpGss~ 533 (925)
T PRK12903 503 YVLGTDKAES------------------RRIDNQLRGRSGRQGDVGESR 533 (925)
T ss_pred EEEecccCch------------------HHHHHHHhcccccCCCCCcce
Confidence 7777554333 2223489999999996 7543
|
|
| >PRK12902 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.9e-05 Score=94.84 Aligned_cols=80 Identities=15% Similarity=0.201 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC-CCHHHHHHhcC-CCCCCcEEEE
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS-LPNNEQIKVFR-PTPRAMRKIV 479 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~-l~q~~r~~v~~-~f~~g~~kVl 479 (858)
..+.++.+...|.. +.+|||-+.+-+.-+.+++.|.+. |+..-.|++. ...+.-..+.. +=+.| .|-
T Consensus 425 ~~Ai~~ei~~~~~~--GrPVLIgT~SVe~SE~ls~~L~~~-------gi~h~vLNAk~~~~~~EA~IIa~AG~~G--aVT 493 (939)
T PRK12902 425 WRAVANETAEMHKQ--GRPVLVGTTSVEKSELLSALLQEQ-------GIPHNLLNAKPENVEREAEIVAQAGRKG--AVT 493 (939)
T ss_pred HHHHHHHHHHHHhC--CCCEEEeeCCHHHHHHHHHHHHHc-------CCchheeeCCCcchHhHHHHHHhcCCCC--cEE
Confidence 34455555555544 568999999999999999999977 6666667765 22222223333 33333 588
Q ss_pred EecCcccccCCCC
Q psy2470 480 IATNIAETSITIP 492 (858)
Q Consensus 480 vATdvAergldIp 492 (858)
||||.|.||-||.
T Consensus 494 IATNMAGRGTDIk 506 (939)
T PRK12902 494 IATNMAGRGTDII 506 (939)
T ss_pred EeccCCCCCcCEe
Confidence 9999999998874
|
|
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.5e-05 Score=96.26 Aligned_cols=139 Identities=18% Similarity=0.227 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
++.+...+.+.++... .+|++|||+++.+..+.+++.|..... ..++.+.. .+.. ..|.++++.|++|+..||
T Consensus 657 ~~~~~ia~~i~~l~~~-~~g~~LVlftS~~~l~~v~~~L~~~~~---~~~~~~l~--q~~~-~~r~~ll~~F~~~~~~iL 729 (850)
T TIGR01407 657 EYAQEIASYIIEITAI-TSPKILVLFTSYEMLHMVYDMLNELPE---FEGYEVLA--QGIN-GSRAKIKKRFNNGEKAIL 729 (850)
T ss_pred HHHHHHHHHHHHHHHh-cCCCEEEEeCCHHHHHHHHHHHhhhcc---ccCceEEe--cCCC-ccHHHHHHHHHhCCCeEE
Confidence 3455566666666554 368999999999999999999975211 11344433 2332 578889999999999999
Q ss_pred EecCcccccCCCCCee--EEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--ceEE
Q psy2470 480 IATNIAETSITIPGIV--YVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 480 vATdvAergldIp~V~--~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~--G~~~ 543 (858)
++|+...+|||+||.. .||=.++|...--|| ..|-+.+. ..|...-...|-+||.=|... |..+
T Consensus 730 lgt~sf~EGVD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ 809 (850)
T TIGR01407 730 LGTSSFWEGVDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIV 809 (850)
T ss_pred EEcceeecccccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEE
Confidence 9999999999999876 444467765321111 11111111 135455668899999999875 8766
Q ss_pred Ee
Q psy2470 544 RK 545 (858)
Q Consensus 544 rL 545 (858)
-+
T Consensus 810 il 811 (850)
T TIGR01407 810 IL 811 (850)
T ss_pred EE
Confidence 43
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3 | Back alignment and domain information |
|---|
Probab=98.02 E-value=5.2e-05 Score=92.57 Aligned_cols=97 Identities=23% Similarity=0.198 Sum_probs=67.4
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCC--------------------------CCCCc
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRP--------------------------TPRAM 475 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~--------------------------f~~g~ 475 (858)
||=+++.+.+-.+++.|...... ....+.+..+||..+...|..+.+. ...+.
T Consensus 760 liR~anI~p~V~~A~~L~~~~~~-~~~~i~~~~yHSr~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~ 838 (1110)
T TIGR02562 760 LIRVANIDPLIRLAQFLYALLAE-EKYQIHLCCYHAQDPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNH 838 (1110)
T ss_pred EEEEcCchHHHHHHHHHHhhccc-cCCceeEEEecccChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCC
Confidence 56667777777777777644211 1235678889999877766654321 11356
Q ss_pred EEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCc
Q psy2470 476 RKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSG 540 (858)
Q Consensus 476 ~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G 540 (858)
..|+|||.|.|-|+||+ .+++|- .|.+..+.+||+||..|.|..
T Consensus 839 ~~i~v~Tqv~E~g~D~d-fd~~~~--------------------~~~~~~sliQ~aGR~~R~~~~ 882 (1110)
T TIGR02562 839 LFIVLATPVEEVGRDHD-YDWAIA--------------------DPSSMRSIIQLAGRVNRHRLE 882 (1110)
T ss_pred CeEEEEeeeEEEEeccc-CCeeee--------------------ccCcHHHHHHHhhcccccccC
Confidence 79999999999999984 344442 467788899999999998763
|
The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc. |
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.97 E-value=2.7e-05 Score=73.57 Aligned_cols=128 Identities=14% Similarity=0.065 Sum_probs=71.1
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.+.++||||||...+..+..+. .. .....+++++|++.++.|..+.+...... +.. +.+.
T Consensus 4 ~i~~~~G~GKT~~~~~~~~~~~------------~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~---~~~~ 63 (144)
T cd00046 4 LLAAPTGSGKTLAALLPILELL------------DS---LKGGQVLVLAPTRELANQVAERLKELFGE--GIK---VGYL 63 (144)
T ss_pred EEECCCCCchhHHHHHHHHHHH------------hc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcE---EEEE
Confidence 3579999999933333222211 00 12235799999999999998888766542 222 3433
Q ss_pred Eecccee------ecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 285 FRKGRMK------ILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 285 vr~~~~~------~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
....... ....+|+++|++.+.+ ..... ....+.++ ..+.. ............ ......
T Consensus 64 ~~~~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~---~~~~~~~~~~~~-----~~~~~~ 135 (144)
T cd00046 64 IGGTSIKQQEKLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLN---QGFGLLGLKILL-----KLPKDR 135 (144)
T ss_pred ecCcchhHHHHHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhh---cchHHHHHHHHh-----hCCccc
Confidence 3333322 3468999999999988 43322 22234433 22220 111111011122 345667
Q ss_pred eEEEEeccc
Q psy2470 352 KLIISSATV 360 (858)
Q Consensus 352 q~il~SAT~ 360 (858)
+++++|||+
T Consensus 136 ~~i~~saTp 144 (144)
T cd00046 136 QVLLLSATP 144 (144)
T ss_pred eEEEEeccC
Confidence 899999995
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=3e-05 Score=96.52 Aligned_cols=105 Identities=13% Similarity=0.120 Sum_probs=88.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC---CcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR---AMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~---g~~kVlvATdvAergldIp~ 493 (858)
...+||||..-....+.+.+.|... ++....+||+++.++|..+++.|.. +..-+|++|..+..||++..
T Consensus 486 ~g~KVLIFSQft~~LdiLed~L~~~-------g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~ 558 (1033)
T PLN03142 486 RDSRVLIFSQMTRLLDILEDYLMYR-------GYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLAT 558 (1033)
T ss_pred cCCeEEeehhHHHHHHHHHHHHHHc-------CCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccccccCCchhh
Confidence 3568999998888888888888755 7889999999999999999999953 34567899999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
.++||. || .|=++....|+.||+-|-|. =.+|+|+
T Consensus 559 Ad~VIi--------yD----------~dWNP~~d~QAidRaHRIGQkk~V~VyRLI 596 (1033)
T PLN03142 559 ADIVIL--------YD----------SDWNPQVDLQAQDRAHRIGQKKEVQVFRFC 596 (1033)
T ss_pred CCEEEE--------eC----------CCCChHHHHHHHHHhhhcCCCceEEEEEEE
Confidence 999999 77 44567778899999988886 4577887
|
|
| >COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00019 Score=85.01 Aligned_cols=101 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH-HhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI-KVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~-~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
.++.|||+.+...++.+.+.|++.... ..+--+..+-|+-.+.++. ..|.. ++.--+|.++-|...+|||+|.|..
T Consensus 426 ~~KTIvFa~n~dHAe~i~~~~~~~ype--~~~~~a~~IT~d~~~~q~~Id~f~~-ke~~P~IaitvdlL~TGiDvpev~n 502 (875)
T COG4096 426 IGKTIVFAKNHDHAERIREALVNEYPE--YNGRYAMKITGDAEQAQALIDNFID-KEKYPRIAITVDLLTTGVDVPEVVN 502 (875)
T ss_pred cCceEEEeeCcHHHHHHHHHHHHhCcc--ccCceEEEEeccchhhHHHHHHHHh-cCCCCceEEehhhhhcCCCchheee
Confidence 578999999999999999999855321 1233355556665555432 22222 3444689999999999999999887
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
+|= +- .--|+.-+.|++||.=|..+
T Consensus 503 lVF---------~r---------~VrSktkF~QMvGRGTRl~~ 527 (875)
T COG4096 503 LVF---------DR---------KVRSKTKFKQMVGRGTRLCP 527 (875)
T ss_pred eee---------hh---------hhhhHHHHHHHhcCccccCc
Confidence 762 21 12488899999999999765
|
|
| >PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.001 Score=75.65 Aligned_cols=181 Identities=13% Similarity=0.086 Sum_probs=114.9
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEE----------ecCeecceeEEEecCCccchH---HH----HHHHHHHHH
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILS----------VKGHLYPVSVYYSNDPVVNYV---QG----VVDTAIKIH 413 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~----------v~g~~~~v~~~~~~~~~~~~~---~~----~~~~l~~i~ 413 (858)
+|+|++|+...++- ...|.....+-.-.+. +..-..++.+.|......+.. +. -.+.++-.+
T Consensus 216 RQtii~S~~~~pe~-~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~s~~~~~d~Rf~yF~~~iLP~l 294 (442)
T PF06862_consen 216 RQTIIFSSFQTPEI-NSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCSSPADDPDARFKYFTKKILPQL 294 (442)
T ss_pred eEeEEecCCCCHHH-HHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCCCcchhhhHHHHHHHHHHHHHh
Confidence 79999999986653 2222211000111111 111224566666654332211 11 122233333
Q ss_pred h-hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc--ccCC
Q psy2470 414 E-SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE--TSIT 490 (858)
Q Consensus 414 ~-~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe--rgld 490 (858)
. ....+.+|||+|+.-+--++-+.|++. ++....+|--.++.+-.++=..|..|+.+|++-|-=+= +=-.
T Consensus 295 ~~~~~~~~~LIfIPSYfDfVRlRN~lk~~-------~~sF~~i~EYts~~~isRAR~~F~~G~~~iLL~TER~HFfrRy~ 367 (442)
T PF06862_consen 295 KRDSKMSGTLIFIPSYFDFVRLRNYLKKE-------NISFVQISEYTSNSDISRARSQFFHGRKPILLYTERFHFFRRYR 367 (442)
T ss_pred hhccCCCcEEEEecchhhhHHHHHHHHhc-------CCeEEEecccCCHHHHHHHHHHHHcCCceEEEEEhHHhhhhhce
Confidence 3 445678999999999999999999865 78888899888898888888889999999999994332 3357
Q ss_pred CCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcc----cCCCCCceEEEehhhHhhhhh
Q psy2470 491 IPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGR----AGRVRSGHVYRKNFMYNRLFI 554 (858)
Q Consensus 491 Ip~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GR----aGR~g~G~~~rL~~~~~~l~~ 554 (858)
|.||+.||=+|+|..+.|-+. .....+. .+-.+.+.|..||..|+.+.-
T Consensus 368 irGi~~viFY~~P~~p~fY~E---------------l~n~~~~~~~~~~~~~~~~~~~lysk~D~~~L 420 (442)
T PF06862_consen 368 IRGIRHVIFYGPPENPQFYSE---------------LLNMLDESSGGEVDAADATVTVLYSKYDALRL 420 (442)
T ss_pred ecCCcEEEEECCCCChhHHHH---------------HHhhhcccccccccccCceEEEEecHhHHHHH
Confidence 999999999999888773211 1111111 112234889999977776655
|
; GO: 0005634 nucleus |
| >KOG1123|consensus | Back alignment and domain information |
|---|
Probab=97.77 E-value=8.9e-05 Score=82.45 Aligned_cols=105 Identities=21% Similarity=0.285 Sum_probs=77.0
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecC
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATN 483 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATd 483 (858)
.++.+++.|.. ...+||||-..--.....+-.|.+- -+||..+|.||.++++.|+- .++.-|+-.-
T Consensus 531 aCqfLI~~HE~-RgDKiIVFsDnvfALk~YAikl~Kp------------fIYG~Tsq~ERm~ILqnFq~n~~vNTIFlSK 597 (776)
T KOG1123|consen 531 ACQFLIKFHER-RGDKIIVFSDNVFALKEYAIKLGKP------------FIYGPTSQNERMKILQNFQTNPKVNTIFLSK 597 (776)
T ss_pred HHHHHHHHHHh-cCCeEEEEeccHHHHHHHHHHcCCc------------eEECCCchhHHHHHHHhcccCCccceEEEee
Confidence 45667777776 3667999987766555554444321 35999999999999999974 4678888889
Q ss_pred cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 484 IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 484 vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
|+.+|+|+|..++.|. ...-.| |+-+-.||.||.=|+.+
T Consensus 598 VgDtSiDLPEAnvLIQ--------ISSH~G---------SRRQEAQRLGRILRAKk 636 (776)
T KOG1123|consen 598 VGDTSIDLPEANVLIQ--------ISSHGG---------SRRQEAQRLGRILRAKK 636 (776)
T ss_pred ccCccccCCcccEEEE--------Eccccc---------chHHHHHHHHHHHHHhh
Confidence 9999999999999997 222222 44556688888777643
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00038 Score=83.83 Aligned_cols=112 Identities=9% Similarity=-0.075 Sum_probs=58.9
Q ss_pred CEEEccchHHHHHHHHHHHHHHhC-CcCccEeeeeeEEEeccc---eeecceeEEEeecCccccCCCccCCCcccEE---
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMG-CRMDFEYISRGYMFRKGR---MKILVSKIFKMSQGKPSDSGVEPISQSYLVE--- 320 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g-~~~g~~~~~vG~~vr~~~---~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl--- 320 (858)
++||+.|.-.++.|+.+++.+.+| ..+.....+.+-..|... ......+|+|+|-.-++--..|.. .-+|
T Consensus 190 ~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvFaP~~~Lg---LIIvdEE 266 (665)
T PRK14873 190 GALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVFAPVEDLG---LVAIWDD 266 (665)
T ss_pred eEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEEeccCCCC---EEEEEcC
Confidence 589999999999999999988776 443222111221111111 122447899999877765222221 1122
Q ss_pred --EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHH
Q psy2470 321 --LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQ 367 (858)
Q Consensus 321 --R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~ 367 (858)
-+..+ .+.-.--.+++.... ....+..+|+-|||.+++.+..
T Consensus 267 hd~sykq---~~~p~yhaRdvA~~R--a~~~~~~lvLgSaTPSles~~~ 310 (665)
T PRK14873 267 GDDLLAE---PRAPYPHAREVALLR--AHQHGCALLIGGHARTAEAQAL 310 (665)
T ss_pred CchhhcC---CCCCCccHHHHHHHH--HHHcCCcEEEECCCCCHHHHHH
Confidence 11110 000000112222000 1224678999999998886654
|
|
| >PRK12901 secA preprotein translocase subunit SecA; Reviewed | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=87.70 Aligned_cols=154 Identities=23% Similarity=0.266 Sum_probs=102.9
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeeccee------EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPVS------VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~------~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++-.|+.|. ...+|.+.++ -.++.||.. .|+. .+|. ....+..+.++.+..++.. +.+|||
T Consensus 565 kLsGMTGTA~tea~Ef~~IY~------L~Vv~IPTn-rP~~R~D~~D~vy~--t~~eK~~Aii~ei~~~~~~--GrPVLV 633 (1112)
T PRK12901 565 KLAGMTGTAETEAGEFWDIYK------LDVVVIPTN-RPIARKDKEDLVYK--TKREKYNAVIEEITELSEA--GRPVLV 633 (1112)
T ss_pred hhcccCCCCHHHHHHHHHHhC------CCEEECCCC-CCcceecCCCeEec--CHHHHHHHHHHHHHHHHHC--CCCEEE
Confidence 566788888 4556777665 567777643 2332 2222 1223345566666666654 568999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC--------Cee
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP--------GIV 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp--------~V~ 495 (858)
-+.+.+.-+.+++.|.+. |++.-.|.+...+.|-.-|-++-.+| .|-||||.|.||-||. |==
T Consensus 634 GT~SVe~SE~lS~~L~~~-------gI~H~VLNAK~h~~EAeIVA~AG~~G--aVTIATNMAGRGTDIkLg~~V~e~GGL 704 (1112)
T PRK12901 634 GTTSVEISELLSRMLKMR-------KIPHNVLNAKLHQKEAEIVAEAGQPG--TVTIATNMAGRGTDIKLSPEVKAAGGL 704 (1112)
T ss_pred EeCcHHHHHHHHHHHHHc-------CCcHHHhhccchhhHHHHHHhcCCCC--cEEEeccCcCCCcCcccchhhHHcCCC
Confidence 999999999999999976 66655666665555554444444444 5889999999999997 334
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEE
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVY 543 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~ 543 (858)
|||-+.+ +.|+--=.|=.|||||.|. |.+-
T Consensus 705 ~VIgTer------------------heSrRID~QLrGRaGRQGDPGsS~ 735 (1112)
T PRK12901 705 AIIGTER------------------HESRRVDRQLRGRAGRQGDPGSSQ 735 (1112)
T ss_pred EEEEccC------------------CCcHHHHHHHhcccccCCCCCcce
Confidence 6666543 3344444689999999996 7643
|
|
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00017 Score=72.63 Aligned_cols=140 Identities=13% Similarity=0.089 Sum_probs=75.1
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
.+-+.|+||||||.+....+.. .... .....+++++|++.++.|...++.+.+....... ..
T Consensus 26 ~~~i~~~~GsGKT~~~~~~~~~---------~~~~------~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~---~~ 87 (201)
T smart00487 26 DVILAAPTGSGKTLAALLPALE---------ALKR------GKGKRVLVLVPTRELAEQWAEELKKLGPSLGLKV---VG 87 (201)
T ss_pred cEEEECCCCCchhHHHHHHHHH---------Hhcc------cCCCcEEEEeCCHHHHHHHHHHHHHHhccCCeEE---EE
Confidence 4556799999999222111111 1110 1123589999999999999888866554321111 11
Q ss_pred EEEeccc-------eeecceeEEEeecCcccc-CCCcc-CCCcccEE-----EecCCCCCc-hhhhhHHHHHHHHhcccC
Q psy2470 283 YMFRKGR-------MKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE-----LSILAPGGQ-DVIGEDMKAFAEQLKPLK 347 (858)
Q Consensus 283 ~~vr~~~-------~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl-----R~l~~~~~~-d~ll~~lk~~~~~l~~~~ 347 (858)
. ..... ......+++++|++.+.+ ..... ...++.++ .++. . .+.. ....+. ...
T Consensus 88 ~-~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~----~~~~~~-~~~~~~----~~~ 157 (201)
T smart00487 88 L-YGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLL----DGGFGD-QLEKLL----KLL 157 (201)
T ss_pred E-eCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHh----cCCcHH-HHHHHH----HhC
Confidence 1 11111 111223999999999998 33322 33444443 2332 1 1111 222222 133
Q ss_pred CCCceEEEEeccc--CHHHHHHHhh
Q psy2470 348 RTQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 348 ~~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
++..+++++|||. +...+...+.
T Consensus 158 ~~~~~~v~~saT~~~~~~~~~~~~~ 182 (201)
T smart00487 158 PKNVQLLLLSATPPEEIENLLELFL 182 (201)
T ss_pred CccceEEEEecCCchhHHHHHHHhc
Confidence 5678999999999 5565555444
|
|
| >PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.00014 Score=69.80 Aligned_cols=97 Identities=14% Similarity=-0.029 Sum_probs=53.9
Q ss_pred cCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEecc-ceeecceeEEEeecCcccc-CCCccCCCcccEE----
Q psy2470 247 RPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKG-RMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE---- 320 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~-~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl---- 320 (858)
.++|||.|||++|..+.+.+. |.. +.+..... .....+.-|-+||.+.+.+ +++...+.+|++|
T Consensus 34 ~rvLvL~PTRvva~em~~aL~---~~~-------~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~~p~~~~~yd~II~DE 103 (148)
T PF07652_consen 34 LRVLVLAPTRVVAEEMYEALK---GLP-------VRFHTNARMRTHFGSSIIDVMCHATYGHFLLNPCRLKNYDVIIMDE 103 (148)
T ss_dssp --EEEEESSHHHHHHHHHHTT---TSS-------EEEESTTSS----SSSSEEEEEHHHHHHHHHTSSCTTS-SEEEECT
T ss_pred CeEEEecccHHHHHHHHHHHh---cCC-------cccCceeeeccccCCCcccccccHHHHHHhcCcccccCccEEEEec
Confidence 358999999999877766552 222 22222211 1222446678899988887 5555567789988
Q ss_pred -EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC
Q psy2470 321 -LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD 361 (858)
Q Consensus 321 -R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~ 361 (858)
.-.| +.+=...++++... . ..+.++|+||||..
T Consensus 104 cH~~D--p~sIA~rg~l~~~~-----~-~g~~~~i~mTATPP 137 (148)
T PF07652_consen 104 CHFTD--PTSIAARGYLRELA-----E-SGEAKVIFMTATPP 137 (148)
T ss_dssp TT--S--HHHHHHHHHHHHHH-----H-TTS-EEEEEESS-T
T ss_pred cccCC--HHHHhhheeHHHhh-----h-ccCeeEEEEeCCCC
Confidence 2333 11112355666554 2 23468999999973
|
The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A .... |
| >KOG0951|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.017 Score=71.38 Aligned_cols=298 Identities=10% Similarity=0.074 Sum_probs=151.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+-|++||||| +...+..++ ++ +...+.=+.|..+.+...+...-+.++.-.|..+.-.|...
T Consensus 1164 vga~~gsgkt------------~~ae~a~l~-~~-----~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~ 1225 (1674)
T KOG0951|consen 1164 VGAPNGSGKT------------ACAELALLR-PD-----TIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGET 1225 (1674)
T ss_pred EecCCCCchh------------HHHHHHhcC-Cc-----cceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCcc
Confidence 3589999999 221122222 11 12235668898887766665554444444555522223222
Q ss_pred eccceeecceeEEEeecCccccCCCccCCCcccEE---EecCCCCC--chhhhhHHHHHHHHhcccCCCCceEEEEeccc
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE---LSILAPGG--QDVIGEDMKAFAEQLKPLKRTQLKLIISSATV 360 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl---R~l~~~~~--~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~ 360 (858)
..+-+.....+|+++||-..--++ .....++.+. .++.+-.| -+.+.. .+.+..++ -++.+++..|..+
T Consensus 1226 s~~lkl~~~~~vii~tpe~~d~lq-~iQ~v~l~i~d~lh~igg~~g~v~evi~S-~r~ia~q~----~k~ir~v~ls~~l 1299 (1674)
T KOG0951|consen 1226 SLDLKLLQKGQVIISTPEQWDLLQ-SIQQVDLFIVDELHLIGGVYGAVYEVICS-MRYIASQL----EKKIRVVALSSSL 1299 (1674)
T ss_pred ccchHHhhhcceEEechhHHHHHh-hhhhcceEeeehhhhhcccCCceEEEEee-HHHHHHHH----HhheeEEEeehhh
Confidence 222222356899999998753332 1111111111 11110000 011112 22222222 2466788888777
Q ss_pred -CHHHHHHHhhcccCCCCcEEEe--cCeecceeEEEecCCccchHHH-------HHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 361 -DAEEICQFYNISASSNATILSV--KGHLYPVSVYYSNDPVVNYVQG-------VVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 361 -~~~~~~~~~~~~~~~~~~~i~v--~g~~~~v~~~~~~~~~~~~~~~-------~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
++..+. ++. ...++.. ..|..|.++..+......+... ....+.... ..+.+.+||+|+++.
T Consensus 1300 ana~d~i-g~s-----~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~~am~~~~~~ai~~~a--~~~k~~~vf~p~rk~ 1371 (1674)
T KOG0951|consen 1300 ANARDLI-GAS-----SSGVFNFSPSVRPVPLEIHIQSVDISHFESRMLAMTKPTYTAIVRHA--GNRKPAIVFLPTRKH 1371 (1674)
T ss_pred ccchhhc-ccc-----ccceeecCcccCCCceeEEEEEeccchhHHHHHHhhhhHHHHHHHHh--cCCCCeEEEeccchh
Confidence 666652 111 1222222 1233444444433222221111 111122111 236789999999999
Q ss_pred HHHHHHHHHHhcc-CC---------C-----CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCee
Q psy2470 431 IEHIIGILKQYHN-QR---------E-----DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 431 i~~l~~~L~~~~~-~~---------~-----~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~ 495 (858)
+..++.-|-...- .. + ...++...=|-+++..++.-+=.-|..|.++|.|..-= --|+-... .
T Consensus 1372 ~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g~i~v~v~s~~-~~~~~~~~-~ 1449 (1674)
T KOG0951|consen 1372 ARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAGAIQVCVMSRD-CYGTKLKA-H 1449 (1674)
T ss_pred hhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcCcEEEEEEEcc-cccccccc-e
Confidence 9888766532110 00 0 01122211288999999888877788999998876432 44444322 2
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||=.| ...||.+.. ...+-+.++..|+.|+|.| .|.|+-+.
T Consensus 1450 lVvvmg---t~~ydg~e~----~~~~y~i~~ll~m~G~a~~--~~k~vi~~ 1491 (1674)
T KOG0951|consen 1450 LVVVMG---TQYYDGKEH----SYEDYPIAELLQMVGLASG--AGKCVIMC 1491 (1674)
T ss_pred EEEEec---ceeeccccc----ccccCchhHHHHHhhhhcC--CccEEEEe
Confidence 333323 334774432 3356677899999999999 57777766
|
|
| >KOG0949|consensus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.0013 Score=78.82 Aligned_cols=78 Identities=26% Similarity=0.215 Sum_probs=64.6
Q ss_pred EEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhh
Q psy2470 452 ILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRA 531 (858)
Q Consensus 452 v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~ 531 (858)
+...|++|...+|..|.--|+.|...|++||...+-||+.|--++|.- .++|. .++-.|.|.+
T Consensus 965 iG~HHaglNr~yR~~VEvLFR~g~L~VlfaT~TLsLGiNMPCrTVvF~--------------gDsLQ---L~plny~Qma 1027 (1330)
T KOG0949|consen 965 IGVHHAGLNRKYRSLVEVLFRQGHLQVLFATETLSLGINMPCRTVVFA--------------GDSLQ---LDPLNYKQMA 1027 (1330)
T ss_pred ccccccccchHHHHHHHHHhhcCceEEEEEeeehhcccCCCceeEEEe--------------ccccc---cCchhHHhhh
Confidence 445699999999999988899999999999999999999998777764 12343 4567899999
Q ss_pred cccCCCCC---ceEEEeh
Q psy2470 532 GRAGRVRS---GHVYRKN 546 (858)
Q Consensus 532 GRaGR~g~---G~~~rL~ 546 (858)
|||||-|= |.+.-+-
T Consensus 1028 GRAGRRGFD~lGnV~Fmg 1045 (1330)
T KOG0949|consen 1028 GRAGRRGFDTLGNVVFMG 1045 (1330)
T ss_pred ccccccccccccceEEEe
Confidence 99999884 7776555
|
|
| >PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.031 Score=67.35 Aligned_cols=104 Identities=14% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
+.+|-||.+|....+.+++..+.. +.+|+.+.|.-+..+ + +. =++.+|++=|.+..-|++++...+=
T Consensus 282 gknIcvfsSt~~~~~~v~~~~~~~-------~~~Vl~l~s~~~~~d---v-~~--W~~~~VviYT~~itvG~Sf~~~HF~ 348 (824)
T PF02399_consen 282 GKNICVFSSTVSFAEIVARFCARF-------TKKVLVLNSTDKLED---V-ES--WKKYDVVIYTPVITVGLSFEEKHFD 348 (824)
T ss_pred CCcEEEEeChHHHHHHHHHHHHhc-------CCeEEEEcCCCCccc---c-cc--ccceeEEEEeceEEEEeccchhhce
Confidence 567889999999988888888766 667888888666552 2 22 2468999999999999998754321
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
-=+++.| ....| -+..+..|..||.-.-.....|--+
T Consensus 349 ~~f~yvk----~~~~g--------pd~~s~~Q~lgRvR~l~~~ei~v~~ 385 (824)
T PF02399_consen 349 SMFAYVK----PMSYG--------PDMVSVYQMLGRVRSLLDNEIYVYI 385 (824)
T ss_pred EEEEEec----CCCCC--------CcHHHHHHHHHHHHhhccCeEEEEE
Confidence 1111111 00111 2344578999998776665555444
|
It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication |
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.03 Score=70.81 Aligned_cols=138 Identities=18% Similarity=0.231 Sum_probs=91.8
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
+|.+...+.+..+... .+|.+|||+++.+..+.+++.|..... ..++.++. . +++...|.++++.|+++...||
T Consensus 735 ~~~~~la~~i~~l~~~-~~g~~LVLFtSy~~l~~v~~~l~~~~~---~~~~~ll~-Q-g~~~~~r~~l~~~F~~~~~~iL 808 (928)
T PRK08074 735 EYIEEVAAYIAKIAKA-TKGRMLVLFTSYEMLKKTYYNLKNEEE---LEGYVLLA-Q-GVSSGSRARLTKQFQQFDKAIL 808 (928)
T ss_pred HHHHHHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHHHHhhccc---ccCceEEe-c-CCCCCCHHHHHHHHHhcCCeEE
Confidence 4455666666666544 368999999999999999999975311 01233332 2 3434457788888988888999
Q ss_pred EecCcccccCCCCC--eeEEEcCCCccce----------eccCCCC---CCcceeeecCHhhHHHhhcccCCCCC--ceE
Q psy2470 480 IATNIAETSITIPG--IVYVIDPGFVKAR----------WFNPNTL---TNSLVVVPISKASAVQRAGRAGRVRS--GHV 542 (858)
Q Consensus 480 vATdvAergldIp~--V~~VId~g~~k~~----------~yd~~~g---~~~l~~~pis~~~~~qR~GRaGR~g~--G~~ 542 (858)
++|+-..-|||+|| .+.||=.++|-.. .|--+.| ...+. .|...-...|=+||.=|... |+.
T Consensus 809 lG~~sFwEGVD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~-lP~A~~~lkQg~GRlIRs~~D~G~v 887 (928)
T PRK08074 809 LGTSSFWEGIDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELS-LPQAVLRFKQGFGRLIRTETDRGTV 887 (928)
T ss_pred EecCcccCccccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhh-hHHHHHHHHhhhhhhcccCCceEEE
Confidence 99999999999997 4777766666421 1111112 22211 35555667899999988765 876
Q ss_pred EE
Q psy2470 543 YR 544 (858)
Q Consensus 543 ~r 544 (858)
+-
T Consensus 888 ~i 889 (928)
T PRK08074 888 FV 889 (928)
T ss_pred EE
Confidence 63
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.017 Score=70.67 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=87.2
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC----CCc
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP----RAM 475 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~----~g~ 475 (858)
++.+...+.+..+.. . +|.+|||+++.+..+.+++.|.... +..++ .+|.. .+.++++.|+ .|.
T Consensus 518 ~~~~~~~~~i~~l~~-~-~gg~LVlFtSy~~l~~v~~~l~~~~------~~~ll-~Q~~~---~~~~ll~~f~~~~~~~~ 585 (697)
T PRK11747 518 AHTAEMAEFLPELLE-K-HKGSLVLFASRRQMQKVADLLPRDL------RLMLL-VQGDQ---PRQRLLEKHKKRVDEGE 585 (697)
T ss_pred HHHHHHHHHHHHHHh-c-CCCEEEEeCcHHHHHHHHHHHHHhc------CCcEE-EeCCc---hHHHHHHHHHHHhccCC
Confidence 455667777777776 3 5569999999999999999987431 23332 25543 3455664444 567
Q ss_pred EEEEEecCcccccCCCCC--eeEEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--
Q psy2470 476 RKIVIATNIAETSITIPG--IVYVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS-- 539 (858)
Q Consensus 476 ~kVlvATdvAergldIp~--V~~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~-- 539 (858)
..||++|+-..-|||+|| .+.||=.++|...--|| ..|-+.+. ..|.-.-...|=+||.=|...
T Consensus 586 ~~VL~g~~sf~EGVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~~D~ 665 (697)
T PRK11747 586 GSVLFGLQSFAEGLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSEQDR 665 (697)
T ss_pred CeEEEEeccccccccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccCCce
Confidence 789999999999999987 78887767765321111 11212221 124344457899999988654
Q ss_pred ceEEEe
Q psy2470 540 GHVYRK 545 (858)
Q Consensus 540 G~~~rL 545 (858)
|+.+-+
T Consensus 666 G~i~il 671 (697)
T PRK11747 666 GRVTIL 671 (697)
T ss_pred EEEEEE
Confidence 876643
|
|
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.03 Score=69.76 Aligned_cols=134 Identities=12% Similarity=0.113 Sum_probs=86.6
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
+|.+...+.+..+. ..+|++|||+++.+..+.+++.|... ...++ ..|.-. .+.++++.|+++...||
T Consensus 631 ~~~~~~~~~i~~~~--~~~g~~LVLFtS~~~l~~v~~~l~~~-------~~~~l-~Qg~~~--~~~~l~~~F~~~~~~vL 698 (820)
T PRK07246 631 VYAEEIAKRLEELK--QLQQPILVLFNSKKHLLAVSDLLDQW-------QVSHL-AQEKNG--TAYNIKKRFDRGEQQIL 698 (820)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEECcHHHHHHHHHHHhhc-------CCcEE-EeCCCc--cHHHHHHHHHcCCCeEE
Confidence 45556666666655 24789999999999999999998643 22332 223211 24557788888888999
Q ss_pred EecCcccccCCCCC--eeEEEcCCCccceeccC----------CCCCCcce--eeecCHhhHHHhhcccCCCCC--ceEE
Q psy2470 480 IATNIAETSITIPG--IVYVIDPGFVKARWFNP----------NTLTNSLV--VVPISKASAVQRAGRAGRVRS--GHVY 543 (858)
Q Consensus 480 vATdvAergldIp~--V~~VId~g~~k~~~yd~----------~~g~~~l~--~~pis~~~~~qR~GRaGR~g~--G~~~ 543 (858)
++|+-.--|||+|+ ...||=.++|...-.|| +.|-+.+. ..|.-.-...|=+||.=|... |+.+
T Consensus 699 lG~~sFwEGVD~p~~~~~~viI~kLPF~~P~dP~~~a~~~~~~~~g~~~F~~~~lP~A~iklkQg~GRLIRs~~D~Gvv~ 778 (820)
T PRK07246 699 LGLGSFWEGVDFVQADRMIEVITRLPFDNPEDPFVKKMNQYLLQEGKNPFYDYFLPMTILRLKQAIGRTMRREDQKSAVL 778 (820)
T ss_pred EecchhhCCCCCCCCCeEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhheeHHHHHHHHHHHhcccccCCCCcEEEE
Confidence 99999999999973 44444457664322121 11212111 135445668899999999864 8766
Q ss_pred Ee
Q psy2470 544 RK 545 (858)
Q Consensus 544 rL 545 (858)
-+
T Consensus 779 il 780 (820)
T PRK07246 779 IL 780 (820)
T ss_pred EE
Confidence 43
|
|
| >TIGR00604 rad3 DNA repair helicase (rad3) | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.033 Score=68.59 Aligned_cols=191 Identities=13% Similarity=0.106 Sum_probs=106.2
Q ss_pred CceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCee-----------------cceeEEEecCCccchHHHHHHHHHH
Q psy2470 350 QLKLIISSATV-DAEEICQFYNISASSNATILSVKGHL-----------------YPVSVYYSNDPVVNYVQGVVDTAIK 411 (858)
Q Consensus 350 ~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~-----------------~~v~~~~~~~~~~~~~~~~~~~l~~ 411 (858)
-..+|++|||+ ..+.|.+.++.. .+.....+.. .+.+..|......++.....+.+..
T Consensus 441 ~~svil~SgTL~p~~~~~~~Lg~~----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~l~~~~~~r~~~~~~~~l~~~i~~ 516 (705)
T TIGR00604 441 VRSVILASGTLSPLDAFPRNLGFN----PVSQDSPTHILKRENLLTLIVTRGSDQVPLSSTFEIRNDPSLVRNLGELLVE 516 (705)
T ss_pred cCEEEEecccCCcHHHHHHHhCCC----CccceecCcccchHHeEEEEEeeCCCCCeeeeehhccCCHHHHHHHHHHHHH
Confidence 35799999999 567787777631 1111110000 1111222222223455566666767
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccC---CCCcceEEEeccCCCCHHHHHHhcCCCCC----CcEEEEEec--
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQ---REDLKLLILPMHGSLPNNEQIKVFRPTPR----AMRKIVIAT-- 482 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~---~~~~~~~v~~LHg~l~q~~r~~v~~~f~~----g~~kVlvAT-- 482 (858)
+.... +|.+|||+|+....+.+.+.+.+.... .....+-+-+ .+ ..++.++++.|+. |.-.|++|+
T Consensus 517 ~~~~~-pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~-~~---~~~~~~~l~~f~~~~~~~~gavL~av~g 591 (705)
T TIGR00604 517 FSKII-PDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVET-KD---AQETSDALERYKQAVSEGRGAVLLSVAG 591 (705)
T ss_pred HhhcC-CCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeC-CC---cchHHHHHHHHHHHHhcCCceEEEEecC
Confidence 76654 688999999999999999888742100 0001122222 11 1466778877743 445699999
Q ss_pred CcccccCCCCC--eeEEEcCCCccceeccCCC-------------CCCcceeeecCHhhHHHhhcccCCCCC--ceEEEe
Q psy2470 483 NIAETSITIPG--IVYVIDPGFVKARWFNPNT-------------LTNSLVVVPISKASAVQRAGRAGRVRS--GHVYRK 545 (858)
Q Consensus 483 dvAergldIp~--V~~VId~g~~k~~~yd~~~-------------g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL 545 (858)
.-.+=|||++| .+.||=.|+|-....|+.. +-..........-...|=+||.=|... |..+-+
T Consensus 592 Gk~sEGIDf~~~~~r~ViivGlPf~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~a~~~v~QaiGR~IR~~~D~G~iill 671 (705)
T TIGR00604 592 GKVSEGIDFCDDLGRAVIMVGIPYEYTESRILLARLEFLRDQYPIRENQDFYEFDAMRAVNQAIGRVIRHKDDYGSIVLL 671 (705)
T ss_pred CcccCccccCCCCCcEEEEEccCCCCCCCHHHHHHHHHHHhhcCCCccHHHHHHHHHHHHHHHhCccccCcCceEEEEEE
Confidence 77788999997 5777778988732222111 101000011122345688888888765 765543
Q ss_pred hhhH
Q psy2470 546 NFMY 549 (858)
Q Consensus 546 ~~~~ 549 (858)
=..|
T Consensus 672 D~R~ 675 (705)
T TIGR00604 672 DKRY 675 (705)
T ss_pred ehhc
Confidence 2333
|
All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.13 Score=62.82 Aligned_cols=187 Identities=14% Similarity=0.143 Sum_probs=109.9
Q ss_pred CCceEEEEeccc-CHHHHHHHhhcccCCCCc-EEEecCeeccee---EEEecCC----c-cchHHHHHHHHHHHHhhCCC
Q psy2470 349 TQLKLIISSATV-DAEEICQFYNISASSNAT-ILSVKGHLYPVS---VYYSNDP----V-VNYVQGVVDTAIKIHESMPV 418 (858)
Q Consensus 349 ~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~-~i~v~g~~~~v~---~~~~~~~----~-~~~~~~~~~~l~~i~~~~~~ 418 (858)
...-+|++|||+ ....|..+.+........ .+.++.. ++.. ..+.... . ..........+..+.... +
T Consensus 402 ~~~~~vl~SaTL~~~~~f~~~~~~~~~~~~~~~~~~~sp-f~~~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 479 (654)
T COG1199 402 KVASVVLTSATLSPLDSFSSLLGLLGLEEKLRFLSLPSP-FNYEEQGQLYVPTDLPEPREPELLAKLAAYLREILKAS-P 479 (654)
T ss_pred hcCcEEEeeeeccCCCcHHHHHHHcCCccccceeccCCC-CChhhcceEeccccCCCCCChHHHHHHHHHHHHHHhhc-C
Confidence 345689999999 344555544422111111 2222221 1111 1222211 1 135556666677776654 5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE-EEEEecCcccccCCCCCe--e
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR-KIVIATNIAETSITIPGI--V 495 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~-kVlvATdvAergldIp~V--~ 495 (858)
|.+|||+|+.+..+.+++.+.... ....+..+|.-+.+ ..++.|+.+.- .++|+|.-..-|||+||= +
T Consensus 480 ~~~lvlF~Sy~~l~~~~~~~~~~~------~~~~v~~q~~~~~~---~~l~~f~~~~~~~~lv~~gsf~EGVD~~g~~l~ 550 (654)
T COG1199 480 GGVLVLFPSYEYLKRVAERLKDER------STLPVLTQGEDERE---ELLEKFKASGEGLILVGGGSFWEGVDFPGDALR 550 (654)
T ss_pred CCEEEEeccHHHHHHHHHHHhhcC------ccceeeecCCCcHH---HHHHHHHHhcCCeEEEeeccccCcccCCCCCee
Confidence 689999999999999999998541 11234456666555 44444444333 899999999999999974 4
Q ss_pred EEEcCCCccce----------eccCCCCC--CcceeeecCHhhHHHhhcccCCCCC--ceEEEeh
Q psy2470 496 YVIDPGFVKAR----------WFNPNTLT--NSLVVVPISKASAVQRAGRAGRVRS--GHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~----------~yd~~~g~--~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~ 546 (858)
.||=.|+|-.. .|.-+.|. -.....|...-...|=+||.=|... |+++-+=
T Consensus 551 ~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~ivllD 615 (654)
T COG1199 551 LVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVIVLLD 615 (654)
T ss_pred EEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEEEEec
Confidence 55544666431 23333221 1223356666778899999988644 8888654
|
|
| >PF09637 Med18: Med18 protein; InterPro: IPR019095 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.0017 Score=69.19 Aligned_cols=155 Identities=38% Similarity=0.654 Sum_probs=88.9
Q ss_pred HhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchh---------ccCCC--ChhHHHHHHHhcCCCC--ccccc
Q psy2470 138 LLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFS---------IRGNQ--TQPLLLRVRRALDFPD--MPYQL 204 (858)
Q Consensus 138 l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~---------l~~~~--~~~~~~~~~~~~~~~~--~~~~~ 204 (858)
|.+.|++.+...+.+.++|+|+|++.. |+.|++++++|+ +.+.+ ..+...++++.+.... .++..
T Consensus 3 l~L~~sV~~~~~~~~l~~L~gl~~~~~--p~~~~~~~lvfkp~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 80 (250)
T PF09637_consen 3 LSLFGSVPDSDYEQLLSRLRGLCGMVQ--PEEFAERELVFKPNRSYKPSFLPGKNQQVQPLRMRLSQQLPKQSNGGQYYY 80 (250)
T ss_dssp EEEEEEEEGGGHHHHHHHHHHHCCC----EEEEEEEEEEEEE-TTS---SB-SSSBB-GGCSEEEEEEGGGCGHSSSTSC
T ss_pred EEEEEEEecchHHHHHHHHHHHhCCCC--ccceeeEEEEecCCCcccccccCCCcCCCcHHHHHHHHhhhhhcccccccc
Confidence 567799999999999999999999965 999999999999 44432 1233223333322110 01111
Q ss_pred hhccc---cCCcchhhhhhhhc----CcCcccccccccCCCCCCCCCCccCEEEccchHHH---HHHHHHHHHHHhCCcC
Q psy2470 205 RYIGQ---PEMGPLLLRVRRAL----DFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVA---CSCTVVEFLTEMGCRM 274 (858)
Q Consensus 205 ~~~a~---TGSGKT~~~~~~a~----~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~l---a~qva~~v~~e~g~~~ 274 (858)
.++.. ..+|=. ....+ ..-..+|.++|.+.|++|. ++.+.++.-.... .....-.+.+++|...
T Consensus 81 ~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~W~Lr~~d~Pe~~~---~~~v~~r~~~~~~i~~~~~~~~~fl~~lGy~~ 154 (250)
T PF09637_consen 81 QVVKDVSEDDFGIE---ASELFSGDDQSGSQPWTLRYSDIPEAGK---NRPVTVRTIIESTIVGTSGSLLSFLNELGYRF 154 (250)
T ss_dssp CCCTTHSSSTT-TT---GGG---------SSSEEEEEEE--GCCS---TTSSEEEEEEEEEEEESSSSHHHHHHHTTEEE
T ss_pred ccccccccccCCcc---ccccccccccccCCcEEEEEecCCCCCC---CCceeEEEEEEEEEecCCCCHHHHHHHcCCce
Confidence 11111 011100 00000 0015789999999999764 2223333222221 2334456779999999
Q ss_pred ccEeeeeeEEEeccceeecceeEEEe
Q psy2470 275 DFEYISRGYMFRKGRMKILVSKIFKM 300 (858)
Q Consensus 275 g~~~~~vG~~vr~~~~~~~~t~I~v~ 300 (858)
..+|+..||.....+....-.+|...
T Consensus 155 ~~Eyv~~G~~F~~g~i~I~l~ri~~~ 180 (250)
T PF09637_consen 155 DYEYVVEGYRFFKGDIVIELFRIFKV 180 (250)
T ss_dssp EEEEEEEEEEEEECCEEEEEEEEEEE
T ss_pred EEEEEEEEEEEEECCEEEEEEEEEec
Confidence 99999999998887766655666643
|
Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med18 is one subunit of the Mediator complex and a component of the head module that is involved in stimulating basal RNA polymerase II (PolII) transcription. Med18 consists of an eight-stranded beta-barrel with a central pore and three flanking helices. It complexes with Med8 and Med20 proteins by forming a heterodimer of two-fold symmetry with Med20 and binding the C-terminal alpha-helix region of Med8 across the top of its barrel. This complex creates a multipartite TBP-binding site that can be modulated by transcriptional activators []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 2HZM_F 2HZS_H 3RJ1_E 3C0T_A. |
| >PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.0088 Score=74.33 Aligned_cols=71 Identities=10% Similarity=-0.011 Sum_probs=46.9
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH-
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV- 264 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~- 264 (858)
..+..+.+++.... .+-+.|+|||||| .||++|.+... ..++++|.+|||+|+.|+..
T Consensus 252 ~ma~~V~~~l~~~~---~~~~eA~tGtGKT-----~ayllp~l~~~-------------~~~~vvI~t~T~~Lq~Ql~~~ 310 (820)
T PRK07246 252 SFAKLVGEDFHDGP---ASFIEAQTGIGKT-----YGYLLPLLAQS-------------DQRQIIVSVPTKILQDQIMAE 310 (820)
T ss_pred HHHHHHHHHHhCCC---cEEEECCCCCcHH-----HHHHHHHHHhc-------------CCCcEEEEeCcHHHHHHHHHH
Confidence 44556778886443 3556799999999 77777744311 12468999999999999953
Q ss_pred ---HHHHHhCCcCccE
Q psy2470 265 ---EFLTEMGCRMDFE 277 (858)
Q Consensus 265 ---~v~~e~g~~~g~~ 277 (858)
.+++.++.++...
T Consensus 311 ~i~~l~~~~~~~~~~~ 326 (820)
T PRK07246 311 EVKAIQEVFHIDCHSL 326 (820)
T ss_pred HHHHHHHhcCCcEEEE
Confidence 3344455544433
|
|
| >PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.023 Score=56.78 Aligned_cols=123 Identities=18% Similarity=0.180 Sum_probs=73.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC--cccccCCCCC-
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN--IAETSITIPG- 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd--vAergldIp~- 493 (858)
.+|.+|||+|+.+..+.+.+.+..... ..++.+..= ...++.++++.|+++.--|++|+. -..-|||+||
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~---~~~~~v~~q----~~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD~~~~ 80 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLE---EKGIPVFVQ----GSKSRDELLEEFKRGEGAILLAVAGGSFSEGIDFPGD 80 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E----ETSCEEES----TCCHHHHHHHHHCCSSSEEEEEETTSCCGSSS--ECE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhcc---cccceeeec----CcchHHHHHHHHHhccCeEEEEEecccEEEeecCCCc
Confidence 468999999999999999998874311 012223221 355677888889889999999997 7777999996
Q ss_pred -eeEEEcCCCccceeccCCC----------C--CCcceeeecCHhhHHHhhcccCCCCC--ceEEEeh
Q psy2470 494 -IVYVIDPGFVKARWFNPNT----------L--TNSLVVVPISKASAVQRAGRAGRVRS--GHVYRKN 546 (858)
Q Consensus 494 -V~~VId~g~~k~~~yd~~~----------g--~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~ 546 (858)
.+.||=.|+|....-|+.. + .......|...-...|=+||.=|... |..+-+=
T Consensus 81 ~~r~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~~D~g~i~llD 148 (167)
T PF13307_consen 81 LLRAVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSEDDYGVIILLD 148 (167)
T ss_dssp SEEEEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--STT-EEEEEEES
T ss_pred hhheeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceeccCCcEEEEEEc
Confidence 7778877887533222110 0 00111233344456788999988876 6666443
|
|
| >PRK01172 ski2-like helicase; Provisional | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.019 Score=70.38 Aligned_cols=77 Identities=17% Similarity=0.193 Sum_probs=55.8
Q ss_pred ccccCChhHHHHHHHHcCCCCCCCC---CCC--CCCC---HHHHHHHHHHHHhcCccccCC--CcchHHHhhhhcCCCCc
Q psy2470 63 EMQRTELSSAVLQLKALGIHNILRF---SFP--SPPP---AQNLRVALELLYSLGAMDVNG--NLTKPVGETMAEMPLHP 132 (858)
Q Consensus 63 ei~r~~l~~~~L~lk~lg~~~~~~f---~~~--~~P~---~~~l~~a~~~L~~l~ald~~~--~lt~~lG~~ma~lp~~p 132 (858)
++.+.++-..+..-...+.+|+.+| .|+ +.++ .+.+++|++.|...|++++++ ..| ++|+.||.+|++|
T Consensus 403 ~~~~~~~l~~i~~g~~~~~~d~~~~l~~tf~~~~~~~~~l~~~v~~~l~~L~~~~~i~~~~~~~~t-~lG~~~s~~~l~~ 481 (674)
T PRK01172 403 RKVRFNTLAAISMGLASSMEDLILFYNETLMAIQNGVDEIDYYIESSLKFLKENGFIKGDVTLRAT-RLGKLTSDLYIDP 481 (674)
T ss_pred ccHHHHHHHHHHhcccCCHHHHHHHHHhhhhHhcCchHHHHHHHHHHHHHHHHCCCcccCCcEeEC-HHHHHHHHhCCCH
Confidence 4555554444444444455666665 444 5443 567999999999999998765 468 7999999999999
Q ss_pred hhhhHHhh
Q psy2470 133 IHAKVLLS 140 (858)
Q Consensus 133 ~~~~~l~~ 140 (858)
.-++.+..
T Consensus 482 ~t~~~~~~ 489 (674)
T PRK01172 482 ESALILKS 489 (674)
T ss_pred HHHHHHHH
Confidence 99998864
|
|
| >KOG0392|consensus | Back alignment and domain information |
|---|
Probab=94.20 E-value=0.28 Score=61.05 Aligned_cols=109 Identities=19% Similarity=0.252 Sum_probs=84.5
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEE-EecCcccccCCCCCeeE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIV-IATNIAETSITIPGIVY 496 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVl-vATdvAergldIp~V~~ 496 (858)
.++||||-=+..++-+.+-|-+.. .+.+.-.-|-|..++.+|.++.++|-++ .+.|+ ++|-|..-|++.-|.+.
T Consensus 1341 HRiLIFcQlK~mlDlVekDL~k~~----mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADT 1416 (1549)
T KOG0392|consen 1341 HRILIFCQLKSMLDLVEKDLFKKY----MPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADT 1416 (1549)
T ss_pred ceeEEeeeHHHHHHHHHHHHhhhh----cCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCce
Confidence 479999999999999988887542 2466777899999999999999999888 67765 67999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||= ++|.-+ |..--+|+-|+-|-|...-=-+|||.
T Consensus 1417 VVF--------vEHDWN-------PMrDLQAMDRAHRIGQKrvVNVyRlI 1451 (1549)
T KOG0392|consen 1417 VVF--------VEHDWN-------PMRDLQAMDRAHRIGQKRVVNVYRLI 1451 (1549)
T ss_pred EEE--------EecCCC-------chhhHHHHHHHHhhcCceeeeeeeeh
Confidence 995 443322 33334566677776666556688887
|
|
| >KOG0391|consensus | Back alignment and domain information |
|---|
Probab=94.09 E-value=0.3 Score=60.26 Aligned_cols=107 Identities=18% Similarity=0.244 Sum_probs=87.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEecCcccccCCCCCee
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvATdvAergldIp~V~ 495 (858)
+..+|||.--....+-+...|+.+ |+..+-|-|.-.-++|+..+++|-... ...|++|---..||++-+.+
T Consensus 1276 ghRvLIfTQMtkmLDVLeqFLnyH-------gylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSggvGiNLtgAD 1348 (1958)
T KOG0391|consen 1276 GHRVLIFTQMTKMLDVLEQFLNYH-------GYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGGVGINLTGAD 1348 (1958)
T ss_pred CceEEehhHHHHHHHHHHHHHhhc-------ceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCccccccccCc
Confidence 678999987777777776667665 999999999999999999999996543 45689999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||= ||...+ |.=-+++.-|.-|-|++..=+.|||.
T Consensus 1349 TVvF--------YDsDwN-------PtMDaQAQDrChRIGqtRDVHIYRLI 1384 (1958)
T KOG0391|consen 1349 TVVF--------YDSDWN-------PTMDAQAQDRCHRIGQTRDVHIYRLI 1384 (1958)
T ss_pred eEEE--------ecCCCC-------chhhhHHHHHHHhhcCccceEEEEee
Confidence 9996 553332 44456777888888888888999998
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.022 Score=68.11 Aligned_cols=48 Identities=6% Similarity=-0.062 Sum_probs=34.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
+-+.|+|||||| .|+.+|.+.+... . ...+++|.+||++|+.|+++.+
T Consensus 19 lliEA~TGtGKT-----lAYLlpal~~~~~-----~-----~~~rvlIstpT~~Lq~Ql~~~l 66 (636)
T TIGR03117 19 GMLEASTGVGKT-----LAMIMAALTMLKE-----R-----PDQKIAIAVPTLALMGQLWSEL 66 (636)
T ss_pred EEEEcCCCCcHH-----HHHHHHHHHHHHh-----c-----cCceEEEECCcHHHHHHHHHHH
Confidence 445699999999 7777776554221 0 1235899999999999998744
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.11 Score=63.26 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=51.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
+.+..+...+.. +.+|||-..+.+.-+.+.+.|++. ++.-..|.+.-...|=..+-+.-..| -|-+|||
T Consensus 417 Aiv~~I~~~~~~--gqPvLvgT~sie~SE~ls~~L~~~-------~i~h~VLNAk~h~~EA~Iia~AG~~g--aVTiATN 485 (822)
T COG0653 417 AIVEDIKERHEK--GQPVLVGTVSIEKSELLSKLLRKA-------GIPHNVLNAKNHAREAEIIAQAGQPG--AVTIATN 485 (822)
T ss_pred HHHHHHHHHHhc--CCCEEEcCcceecchhHHHHHHhc-------CCCceeeccccHHHHHHHHhhcCCCC--ccccccc
Confidence 344444444443 678999999999999999999976 44444444433333333333333333 3679999
Q ss_pred cccccCCCC
Q psy2470 484 IAETSITIP 492 (858)
Q Consensus 484 vAergldIp 492 (858)
.|.||=||.
T Consensus 486 MAGRGTDIk 494 (822)
T COG0653 486 MAGRGTDIK 494 (822)
T ss_pred cccCCcccc
Confidence 999999986
|
|
| >KOG0385|consensus | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.48 Score=56.46 Aligned_cols=108 Identities=20% Similarity=0.232 Sum_probs=81.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC---CcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR---AMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~---g~~kVlvATdvAergldIp~ 493 (858)
.+.+||||--=.. +-+.|....-.+ ++..+-+-|..+.++|..+++.|.. .+.-.+++|=-..-||++-.
T Consensus 486 ~GhRVLIFSQmt~----mLDILeDyc~~R---~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~a 558 (971)
T KOG0385|consen 486 QGHRVLIFSQMTR----MLDILEDYCMLR---GYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTA 558 (971)
T ss_pred CCCeEEEeHHHHH----HHHHHHHHHHhc---CceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEecccccccccccc
Confidence 3678999954333 334444332222 8999999999999999999988843 24567799999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.+.||= ||..-+ |..--+|.+|+-|-|...+=++|||.
T Consensus 559 ADtVIl--------yDSDWN-------PQ~DLQAmDRaHRIGQ~K~V~V~RLi 596 (971)
T KOG0385|consen 559 ADTVIL--------YDSDWN-------PQVDLQAMDRAHRIGQKKPVVVYRLI 596 (971)
T ss_pred ccEEEE--------ecCCCC-------chhhhHHHHHHHhhCCcCceEEEEEe
Confidence 999994 332221 44456788999999999899999999
|
|
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.045 Score=47.10 Aligned_cols=20 Identities=10% Similarity=0.071 Sum_probs=17.7
Q ss_pred cCEEEccchHHHHHHHHHHH
Q psy2470 247 RPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v 266 (858)
..+++++||+.++.++.+++
T Consensus 43 ~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 43 KRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CeEEEECCCHHHHHHHHHHH
Confidence 35899999999999998887
|
|
| >KOG0387|consensus | Back alignment and domain information |
|---|
Probab=92.68 E-value=0.73 Score=55.23 Aligned_cols=108 Identities=21% Similarity=0.280 Sum_probs=91.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEecCcccccCCCCCee
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvATdvAergldIp~V~ 495 (858)
+..+|+|-.++...+-+...|... +++..+-+-|.-+...|....+.|-++. --.|++|-|..-|+++-+.+
T Consensus 546 g~rvllFsqs~~mLdilE~fL~~~------~~ysylRmDGtT~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAn 619 (923)
T KOG0387|consen 546 GDRVLLFSQSRQMLDILESFLRRA------KGYSYLRMDGTTPAALRQKLVDRFNEDESIFVFLLTTRVGGLGLNLTGAN 619 (923)
T ss_pred CCEEEEehhHHHHHHHHHHHHHhc------CCceEEEecCCCccchhhHHHHhhcCCCceEEEEEEecccccccccccCc
Confidence 568999999999999888888853 3899999999999999999999998664 33578899999999999998
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
-||= |||.-+ |..-.+|.-|+-|-|....=++|||.
T Consensus 620 RVII--------fDPdWN-------PStD~QAreRawRiGQkkdV~VYRL~ 655 (923)
T KOG0387|consen 620 RVII--------FDPDWN-------PSTDNQARERAWRIGQKKDVVVYRLM 655 (923)
T ss_pred eEEE--------ECCCCC-------CccchHHHHHHHhhcCccceEEEEEe
Confidence 8886 555543 55667888899999998778899998
|
|
| >TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4 | Back alignment and domain information |
|---|
Probab=92.54 E-value=0.69 Score=55.66 Aligned_cols=89 Identities=15% Similarity=0.113 Sum_probs=62.1
Q ss_pred hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC----CcE
Q psy2470 401 YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR----AMR 476 (858)
Q Consensus 401 ~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~----g~~ 476 (858)
|.+...+.+..++.. ..|.+||-+++...++.+++.|+... .+.+ ...|+.+. +...++.|+. |..
T Consensus 454 ~~~~~~~~~~~~~~~-~~G~~lvLfTS~~~~~~~~~~l~~~l------~~~~-l~qg~~~~--~~~l~~~f~~~~~~~~~ 523 (636)
T TIGR03117 454 WLENVSLSTAAILRK-AQGGTLVLTTAFSHISAIGQLVELGI------PAEI-VIQSEKNR--LASAEQQFLALYANGIQ 523 (636)
T ss_pred HHHHHHHHHHHHHHH-cCCCEEEEechHHHHHHHHHHHHhhc------CCCE-EEeCCCcc--HHHHHHHHHHhhcCCCC
Confidence 444566666666654 36789999999999999999997431 2333 34565532 2334555554 578
Q ss_pred EEEEecCcccccCCC----------CCeeEEEc
Q psy2470 477 KIVIATNIAETSITI----------PGIVYVID 499 (858)
Q Consensus 477 kVlvATdvAergldI----------p~V~~VId 499 (858)
.||++|+-+-.|||+ +.++.||=
T Consensus 524 ~vL~gt~sfweGvDv~~~~~~p~~G~~Ls~ViI 556 (636)
T TIGR03117 524 PVLIAAGGAWTGIDLTHKPVSPDKDNLLTDLII 556 (636)
T ss_pred cEEEeCCccccccccCCccCCCCCCCcccEEEE
Confidence 999999999999999 34777764
|
Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome. |
| >TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative | Back alignment and domain information |
|---|
Probab=92.36 E-value=0.074 Score=66.88 Aligned_cols=56 Identities=14% Similarity=0.205 Sum_probs=37.6
Q ss_pred HHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 190 RVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
.+...+..+. .+-+-|+|||||| .|+++|.+.+.. . ..+++|.+||++|+.|+..+
T Consensus 256 ~i~~~~~~~~---~~~~eA~TG~GKT-----~ayLlp~~~~~~-------~-----~~~vvi~t~t~~Lq~Ql~~~ 311 (850)
T TIGR01407 256 LVLDQLTHSE---KSLIEAPTGTGKT-----LGYLLPALYYAI-------T-----EKPVVISTNTKVLQSQLLEK 311 (850)
T ss_pred HHHHHhccCC---cEEEECCCCCchh-----HHHHHHHHHHhc-------C-----CCeEEEEeCcHHHHHHHHHH
Confidence 3445554322 2345699999999 777777655321 0 12589999999999998664
|
This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli. |
| >KOG2340|consensus | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.98 Score=51.83 Aligned_cols=112 Identities=12% Similarity=0.119 Sum_probs=75.9
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEecc--CCCCHHHHHHhcCCCCCCcEEEEEecCccc--ccCCCCCe
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMH--GSLPNNEQIKVFRPTPRAMRKIVIATNIAE--TSITIPGI 494 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LH--g~l~q~~r~~v~~~f~~g~~kVlvATdvAe--rgldIp~V 494 (858)
..+||+.|+.-+--++-..+++. ++....+| +..++-.|.+- -|-.|..+|++=|.=|- |--+|.||
T Consensus 553 s~~LiyIPSYfDFVRvRNy~K~e-------~i~F~~i~EYssk~~vsRAR~--lF~qgr~~vlLyTER~hffrR~~ikGV 623 (698)
T KOG2340|consen 553 SGILIYIPSYFDFVRVRNYMKKE-------EISFVMINEYSSKSKVSRARE--LFFQGRKSVLLYTERAHFFRRYHIKGV 623 (698)
T ss_pred CceEEEecchhhHHHHHHHhhhh-------hcchHHHhhhhhHhhhhHHHH--HHHhcCceEEEEehhhhhhhhheecce
Confidence 45899999999999998888865 44444444 34334344433 36678899999997664 56789999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-----ceEEEehhhHhhhhh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-----GHVYRKNFMYNRLFI 554 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-----G~~~rL~~~~~~l~~ 554 (858)
.-||=+++|..+.| .++.+-..+|+--.|. -.|-.||..|+.+.-
T Consensus 624 k~vVfYqpP~~P~F---------------YsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 624 KNVVFYQPPNNPHF---------------YSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred eeEEEecCCCCcHH---------------HHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999777666552 2455566777754442 456667766665443
|
|
| >PRK05580 primosome assembly protein PriA; Validated | Back alignment and domain information |
|---|
Probab=90.22 E-value=0.39 Score=58.78 Aligned_cols=74 Identities=16% Similarity=0.267 Sum_probs=62.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||.+|+.+-+..+.+.+++.. +..+..+||+++..+|.+.+.+...|..+|||+|.-+-. +.+.++.+|
T Consensus 190 g~~vLvLvPt~~L~~Q~~~~l~~~f------g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-~p~~~l~li 262 (679)
T PRK05580 190 GKQALVLVPEIALTPQMLARFRARF------GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-LPFKNLGLI 262 (679)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-ccccCCCEE
Confidence 5689999999999999999998642 567899999999999999998888899999999975432 556788776
Q ss_pred E
Q psy2470 498 I 498 (858)
Q Consensus 498 I 498 (858)
|
T Consensus 263 V 263 (679)
T PRK05580 263 I 263 (679)
T ss_pred E
Confidence 6
|
|
| >KOG0347|consensus | Back alignment and domain information |
|---|
Probab=89.96 E-value=0.61 Score=53.66 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=49.4
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.|||.||++-+..+.+.|..... .+++.+..+-|||++..|+++++.- -.|||||+
T Consensus 266 ~LV~tPTRELa~QV~~Hl~ai~~---~t~i~v~si~GGLavqKQqRlL~~~----p~IVVATP 321 (731)
T KOG0347|consen 266 ALVVTPTRELAHQVKQHLKAIAE---KTQIRVASITGGLAVQKQQRLLNQR----PDIVVATP 321 (731)
T ss_pred eEEecChHHHHHHHHHHHHHhcc---ccCeEEEEeechhHHHHHHHHHhcC----CCEEEecc
Confidence 79999999999999999986543 3599999999999999999999973 36999998
|
|
| >COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=89.82 E-value=1.2 Score=56.16 Aligned_cols=105 Identities=21% Similarity=0.294 Sum_probs=86.2
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC--cEEEEEecCcccccCCCCCeeEE
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA--MRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g--~~kVlvATdvAergldIp~V~~V 497 (858)
++|||..-....+-+...++.. ++...-++|+++.+.|...++.|.++ ..-++++|-.+..|++.-.-++|
T Consensus 713 kvlifsq~t~~l~il~~~l~~~-------~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~v 785 (866)
T COG0553 713 KVLIFSQFTPVLDLLEDYLKAL-------GIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTV 785 (866)
T ss_pred cEEEEeCcHHHHHHHHHHHHhc-------CCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceE
Confidence 7999999999999999988876 57789999999999999999999875 56677888899999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|- ||+.-+ |.-..+|..|+-|-|+..+=.+|++.
T Consensus 786 i~--------~d~~wn-------p~~~~Qa~dRa~RigQ~~~v~v~r~i 819 (866)
T COG0553 786 IL--------FDPWWN-------PAVELQAIDRAHRIGQKRPVKVYRLI 819 (866)
T ss_pred EE--------eccccC-------hHHHHHHHHHHHHhcCcceeEEEEee
Confidence 98 663322 44455667777777777777788887
|
|
| >TIGR00596 rad1 DNA repair protein (rad1) | Back alignment and domain information |
|---|
Probab=89.69 E-value=0.6 Score=57.83 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=50.4
Q ss_pred cccccc-cccCCCCCccceeeEEeecccccc-cccchhcccccceeeccCHHHHhc-c-ccCCCcccccCChhHHHHHHH
Q psy2470 2 TEGILI-ENDDHDPSVEKYSVIMLDKVHERT-IFTDILMECSRKFSRLYTEASFSQ-L-NECTPPEMQRTELSSAVLQLK 77 (858)
Q Consensus 2 ~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~~~~~~g~c~rLy~~~~~~~-~-~~~~~pei~r~~l~~~~L~lk 77 (858)
|.++|+ |.+..--.+...+.||+||||.=+ -+++.-+ -|||-+..=.. . .=+.-||-..+..+.+-=-+|
T Consensus 14 T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI------~rlyr~~n~~gfIkafSdsP~~~~~g~~~l~~vmk 87 (814)
T TIGR00596 14 TSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFI------LRLYRQKNKTGFIKAFSDNPEAFTMGFSPLETKMR 87 (814)
T ss_pred echhhHhHHhcCCCCHHHccEEEEeecccccccccHHHH------HHHHHHhCCCcceEEecCCCcccccchHHHHHHHH
Confidence 455554 444555568889999999999865 3333322 25554432222 1 223458888877777777789
Q ss_pred HcCCCCCCCC
Q psy2470 78 ALGIHNILRF 87 (858)
Q Consensus 78 ~lg~~~~~~f 87 (858)
.|+|.++.-+
T Consensus 88 ~L~i~~v~l~ 97 (814)
T TIGR00596 88 NLFLRHVYLW 97 (814)
T ss_pred HhCcCeEEEe
Confidence 9999887543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit |
| >COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=89.56 E-value=1.1 Score=53.24 Aligned_cols=72 Identities=18% Similarity=0.244 Sum_probs=59.2
Q ss_pred EEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----ccccc-CCCCCe
Q psy2470 421 ILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAETS-ITIPGI 494 (858)
Q Consensus 421 iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAerg-ldIp~V 494 (858)
+||++||++-+..+++.++..... ..++.+..++|+.+...|...++. | ..|||||+ ..+++ ++..+|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~--~~~~~~~~i~GG~~~~~q~~~l~~---~-~~ivVaTPGRllD~i~~~~l~l~~v 175 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKN--LGGLRVAVVYGGVSIRKQIEALKR---G-VDIVVATPGRLLDLIKRGKLDLSGV 175 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhh--cCCccEEEEECCCCHHHHHHHHhc---C-CCEEEECccHHHHHHHcCCcchhhc
Confidence 999999999999999998865322 116789999999999999887775 5 89999998 45555 888899
Q ss_pred eEEE
Q psy2470 495 VYVI 498 (858)
Q Consensus 495 ~~VI 498 (858)
.++|
T Consensus 176 ~~lV 179 (513)
T COG0513 176 ETLV 179 (513)
T ss_pred CEEE
Confidence 9877
|
|
| >TIGR00595 priA primosomal protein N' | Back alignment and domain information |
|---|
Probab=89.29 E-value=0.83 Score=53.95 Aligned_cols=75 Identities=19% Similarity=0.264 Sum_probs=62.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||-+|+..-+..+++.|++.. +..+..+||+++..+|.+++....+|..+|||+|.-|-- +.++++.+|
T Consensus 25 g~~vLvlvP~i~L~~Q~~~~l~~~f------~~~v~vlhs~~~~~er~~~~~~~~~g~~~IVVGTrsalf-~p~~~l~lI 97 (505)
T TIGR00595 25 GKSVLVLVPEIALTPQMIQRFKYRF------GSQVAVLHSGLSDSEKLQAWRKVKNGEILVVIGTRSALF-LPFKNLGLI 97 (505)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHh------CCcEEEEECCCCHHHHHHHHHHHHcCCCCEEECChHHHc-CcccCCCEE
Confidence 5689999999999999999998542 456788999999999999998888899999999976543 456787776
Q ss_pred E-c
Q psy2470 498 I-D 499 (858)
Q Consensus 498 I-d 499 (858)
| |
T Consensus 98 IVD 100 (505)
T TIGR00595 98 IVD 100 (505)
T ss_pred EEE
Confidence 6 5
|
All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0390|consensus | Back alignment and domain information |
|---|
Probab=89.14 E-value=2.9 Score=50.99 Aligned_cols=104 Identities=16% Similarity=0.252 Sum_probs=74.6
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC--CCcEEE-EEecCcccccCCCCCeeEEE
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP--RAMRKI-VIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~--~g~~kV-lvATdvAergldIp~V~~VI 498 (858)
.|.+........+.+.+-+. .|+.++-|||.+++.+|.++++.|- .+.-+| +++|--..=||.+-|-+-||
T Consensus 598 ~v~Isny~~tldl~e~~~~~------~g~~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRli 671 (776)
T KOG0390|consen 598 SVLISNYTQTLDLFEQLCRW------RGYEVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLI 671 (776)
T ss_pred EEEeccHHHHHHHHHHHHhh------cCceEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEE
Confidence 34445555555555555443 1899999999999999999998883 334344 55566667899999999888
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
= ||+.-+ |..-.+|+-|+-|-|...+=..|||.
T Consensus 672 l--------~D~dWN-------Pa~d~QAmaR~~RdGQKk~v~iYrLl 704 (776)
T KOG0390|consen 672 L--------FDPDWN-------PAVDQQAMARAWRDGQKKPVYIYRLL 704 (776)
T ss_pred E--------eCCCCC-------chhHHHHHHHhccCCCcceEEEEEee
Confidence 5 443322 55556788888888887778888988
|
|
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=88.87 E-value=0.9 Score=55.81 Aligned_cols=79 Identities=19% Similarity=0.203 Sum_probs=65.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~~ 496 (858)
..+++|-+||++=+...++.+++.... .++.+..+||+++..+|..+++...+|...|+|+|. .....+..+++.+
T Consensus 310 g~q~lilaPT~~LA~Q~~~~l~~l~~~---~~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 310 GYQAALMAPTEILAEQHYENLKKLLEP---LGIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred CCeEEEEeccHHHHHHHHHHHHHHHhh---cCcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcccchhcccce
Confidence 568999999999999999888865321 268999999999999999999999999999999997 3344566788887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 387 vVID 390 (681)
T PRK10917 387 VIID 390 (681)
T ss_pred EEEe
Confidence 77 5
|
|
| >KOG0389|consensus | Back alignment and domain information |
|---|
Probab=88.85 E-value=2.1 Score=51.45 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=88.5
Q ss_pred HHHHHHHHHhh--CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEE
Q psy2470 405 VVDTAIKIHES--MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVI 480 (858)
Q Consensus 405 ~~~~l~~i~~~--~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlv 480 (858)
++..|..++.. ..+.+||+|--=..-.+-+...|... ++..+-|-|.-+-.+|+.++..|-..+ .-.|+
T Consensus 762 K~r~L~~LLp~~k~~G~RVLiFSQFTqmLDILE~~L~~l-------~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLL 834 (941)
T KOG0389|consen 762 KCRKLKELLPKIKKKGDRVLIFSQFTQMLDILEVVLDTL-------GYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLL 834 (941)
T ss_pred hHhHHHHHHHHHhhcCCEEEEeeHHHHHHHHHHHHHHhc-------CceEEeecCCccchHHHHHHHhhccCCceEEEEE
Confidence 34444444432 23468999965555555555556655 899999999999999999999996543 45689
Q ss_pred ecCcccccCCCCCeeEEE--cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 481 ATNIAETSITIPGIVYVI--DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 481 ATdvAergldIp~V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
+|--..-||++-..++|| |+. |||. .-.+|.-|+-|.|.+.+=.+|||.
T Consensus 835 STKAGG~GINLt~An~VIihD~d------FNP~-----------dD~QAEDRcHRvGQtkpVtV~rLI 885 (941)
T KOG0389|consen 835 STKAGGFGINLTCANTVIIHDID------FNPY-----------DDKQAEDRCHRVGQTKPVTVYRLI 885 (941)
T ss_pred eeccCcceecccccceEEEeecC------CCCc-----------ccchhHHHHHhhCCcceeEEEEEE
Confidence 999999999999999998 433 5543 335677899999999999999998
|
|
| >PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3 | Back alignment and domain information |
|---|
Probab=88.60 E-value=0.23 Score=49.39 Aligned_cols=58 Identities=10% Similarity=0.079 Sum_probs=35.2
Q ss_pred HHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHH
Q psy2470 189 LRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEF 266 (858)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v 266 (858)
.++.+.+....-+-..-+.|+||||||...+..+..+. . .+++++|+..++.|..+.+
T Consensus 13 ~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~-----------------~---~~l~~~p~~~l~~Q~~~~~ 70 (184)
T PF04851_consen 13 ARIINSLENKKEERRVLLNAPTGSGKTIIALALILELA-----------------R---KVLIVAPNISLLEQWYDEF 70 (184)
T ss_dssp HHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHH-----------------C---EEEEEESSHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccc-----------------c---ceeEecCHHHHHHHHHHHH
Confidence 44555554331123444569999999933332111111 0 4788999999999998877
|
1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B .... |
| >COG1110 Reverse gyrase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=88.25 E-value=0.95 Score=55.85 Aligned_cols=77 Identities=16% Similarity=0.254 Sum_probs=59.9
Q ss_pred HHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 406 ~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.-+++.+.....++++++-+||..=+..+++.|++.....+..+..++ +||.|+.++++.+++++.+|..+|+|+|+
T Consensus 113 fg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~~~~~-yh~~l~~~ekee~le~i~~gdfdIlitTs 189 (1187)
T COG1110 113 FGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLDVLVV-YHSALPTKEKEEALERIESGDFDILITTS 189 (1187)
T ss_pred HHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcceeee-eccccchHHHHHHHHHHhcCCccEEEEeH
Confidence 344455554445678999999999999999999865322222344555 99999999999999999999999999996
|
|
| >PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated | Back alignment and domain information |
|---|
Probab=85.81 E-value=0.34 Score=61.46 Aligned_cols=69 Identities=12% Similarity=0.071 Sum_probs=46.6
Q ss_pred hHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHH
Q psy2470 186 PLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVE 265 (858)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~ 265 (858)
..+..+.+++.... .+-+-|+||+||| .|+++|.+.+... ...+++|.++|..|..|+..+
T Consensus 264 ~m~~~v~~~l~~~~---~~~iEA~TGtGKT-----laYLlpa~~~a~~-----------~~~~vvIsT~T~~LQ~Ql~~k 324 (928)
T PRK08074 264 EMMKEVYTALRDSE---HALIEAGTGTGKS-----LAYLLPAAYFAKK-----------KEEPVVISTYTIQLQQQLLEK 324 (928)
T ss_pred HHHHHHHHHHhcCC---CEEEECCCCCchh-----HHHHHHHHHHhhc-----------cCCeEEEEcCCHHHHHHHHHh
Confidence 45566777876443 3446799999999 7777776653211 123589999999999998763
Q ss_pred ----HHHHhCCc
Q psy2470 266 ----FLTEMGCR 273 (858)
Q Consensus 266 ----v~~e~g~~ 273 (858)
+.+.++..
T Consensus 325 DiP~L~~~~~~~ 336 (928)
T PRK08074 325 DIPLLQKIFPFP 336 (928)
T ss_pred hHHHHHHHcCCC
Confidence 44445543
|
|
| >KOG0388|consensus | Back alignment and domain information |
|---|
Probab=85.71 E-value=4.3 Score=48.22 Aligned_cols=108 Identities=21% Similarity=0.241 Sum_probs=88.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEEEEEecCcccccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRKIVIATNIAETSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~kVlvATdvAergldIp~V~ 495 (858)
++..+|+|+.-...++.+.+.|... ++.-+-|-|.....+|..+...|... ..-.|++|--..-||++-..+
T Consensus 1043 egHRvL~yfQMTkM~dl~EdYl~yr-------~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAAD 1115 (1185)
T KOG0388|consen 1043 EGHRVLMYFQMTKMIDLIEDYLVYR-------GYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGINLTAAD 1115 (1185)
T ss_pred CCceEEehhHHHHHHHHHHHHHHhh-------ccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccccccccc
Confidence 3678999998888888888888866 88899999999999999999888654 455678999999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.||= ||..-+ |.--.++.-|+-|-|.+..-.+|||.
T Consensus 1116 TViF--------YdSDWN-------PT~D~QAMDRAHRLGQTrdvtvyrl~ 1151 (1185)
T KOG0388|consen 1116 TVIF--------YDSDWN-------PTADQQAMDRAHRLGQTRDVTVYRLI 1151 (1185)
T ss_pred eEEE--------ecCCCC-------cchhhHHHHHHHhccCccceeeeeec
Confidence 9996 443322 44445677888888888888999998
|
|
| >PRK14873 primosome assembly protein PriA; Provisional | Back alignment and domain information |
|---|
Probab=85.70 E-value=1.6 Score=53.12 Aligned_cols=75 Identities=12% Similarity=0.137 Sum_probs=61.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
++++||-+|....+..+.+.|+.... +-.+..+||+++..+|.+.+....+|+.+|||-|=-|-- .-+++...|
T Consensus 188 Gk~vLvLvPEi~lt~q~~~rl~~~f~-----~~~v~~lhS~l~~~~R~~~w~~~~~G~~~IViGtRSAvF-aP~~~LgLI 261 (665)
T PRK14873 188 GRGALVVVPDQRDVDRLEAALRALLG-----AGDVAVLSAGLGPADRYRRWLAVLRGQARVVVGTRSAVF-APVEDLGLV 261 (665)
T ss_pred CCeEEEEecchhhHHHHHHHHHHHcC-----CCcEEEECCCCCHHHHHHHHHHHhCCCCcEEEEcceeEE-eccCCCCEE
Confidence 56899999999999999999986521 246888999999999999999999999999999854432 345666666
Q ss_pred E
Q psy2470 498 I 498 (858)
Q Consensus 498 I 498 (858)
|
T Consensus 262 I 262 (665)
T PRK14873 262 A 262 (665)
T ss_pred E
Confidence 5
|
|
| >TIGR00580 mfd transcription-repair coupling factor (mfd) | Back alignment and domain information |
|---|
Probab=85.21 E-value=1.8 Score=54.63 Aligned_cols=79 Identities=13% Similarity=0.159 Sum_probs=64.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-cccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-IAETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-vAergldIp~V~~ 496 (858)
..+++|.+||..-++..++.+++.... -++.+..++|..+..++.++++..++|+..|||+|. +....+...++.+
T Consensus 500 g~qvlvLvPT~~LA~Q~~~~f~~~~~~---~~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f~~L~l 576 (926)
T TIGR00580 500 GKQVAVLVPTTLLAQQHFETFKERFAN---FPVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKDVKFKDLGL 576 (926)
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhcc---CCcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCCCCcccCCE
Confidence 468999999999999999988854221 267888999999999999999988899999999998 4445577888887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 577 lVID 580 (926)
T TIGR00580 577 LIID 580 (926)
T ss_pred EEee
Confidence 76 5
|
All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families. |
| >KOG0384|consensus | Back alignment and domain information |
|---|
Probab=84.64 E-value=4.8 Score=50.80 Aligned_cols=106 Identities=19% Similarity=0.199 Sum_probs=85.2
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCC---CCcEEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTP---RAMRKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~---~g~~kVlvATdvAergldIp~ 493 (858)
.+.+||||---..-.+-|++.|... +|..--|-|++..+.|+.+++.|. +...-.|+||=-..-||++-.
T Consensus 698 ~GHrVLIFSQMVRmLDIL~eYL~~r-------~ypfQRLDGsvrgelRq~AIDhFnap~SddFvFLLSTRAGGLGINLat 770 (1373)
T KOG0384|consen 698 GGHRVLIFSQMVRMLDILAEYLSLR-------GYPFQRLDGSVRGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGINLAT 770 (1373)
T ss_pred CCceEEEhHHHHHHHHHHHHHHHHc-------CCcceeccCCcchHHHHHHHHhccCCCCCceEEEEecccCcccccccc
Confidence 3578999977777777788888755 788888999999999999988884 345788999999999999998
Q ss_pred eeEEE--cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 494 IVYVI--DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 494 V~~VI--d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
.+.|| |++ |||.+. -+|.-|+-|-|....=.+|||.
T Consensus 771 ADTVIIFDSD------WNPQND-----------LQAqARaHRIGQkk~VnVYRLV 808 (1373)
T KOG0384|consen 771 ADTVIIFDSD------WNPQND-----------LQAQARAHRIGQKKHVNVYRLV 808 (1373)
T ss_pred cceEEEeCCC------CCcchH-----------HHHHHHHHhhcccceEEEEEEe
Confidence 88888 554 665544 4566678887877778899999
|
|
| >PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional | Back alignment and domain information |
|---|
Probab=83.90 E-value=0.42 Score=58.70 Aligned_cols=61 Identities=10% Similarity=0.027 Sum_probs=40.5
Q ss_pred HHHHHHhcCCCC--ccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHH
Q psy2470 188 LLRVRRALDFPD--MPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVV 264 (858)
Q Consensus 188 ~~~~~~~~~~~~--~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~ 264 (858)
+..+.++|.... .+-.+-+-|+||+||| .|+++|.+.|... ...+++|-+.|..|-.|+..
T Consensus 34 ~~~V~~al~~~~~~~~~~lviEAgTGtGKT-----laYLlPai~~A~~-----------~~k~vVIST~T~~LQeQL~~ 96 (697)
T PRK11747 34 IAEVAKTLAGEYLKDGRILVIEAGTGVGKT-----LSYLLAGIPIARA-----------EKKKLVISTATVALQEQLVS 96 (697)
T ss_pred HHHHHHHHhcccccccceEEEECCCCcchh-----HHHHHHHHHHHHH-----------cCCeEEEEcCCHHHHHHHHh
Confidence 345666665421 1123446699999999 8888887765321 11247888999999999964
|
|
| >COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.91 E-value=1.8 Score=49.92 Aligned_cols=52 Identities=19% Similarity=0.164 Sum_probs=36.1
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~ 273 (858)
.+|.- .|-|||||| |.+ .+ .+. +..+++||++|..-||-|++.++-+-+..+
T Consensus 33 ~~QtL-LGvTGSGKT-------fT~---An---VI~-------~~~rPtLV~AhNKTLAaQLy~Efk~fFP~N 84 (663)
T COG0556 33 KHQTL-LGVTGSGKT-------FTM---AN---VIA-------KVQRPTLVLAHNKTLAAQLYSEFKEFFPEN 84 (663)
T ss_pred eeeEE-eeeccCCch-------hHH---HH---HHH-------HhCCCeEEEecchhHHHHHHHHHHHhCcCc
Confidence 44544 799999999 221 11 111 234578999999999999999986655544
|
|
| >cd00268 DEADc DEAD-box helicases | Back alignment and domain information |
|---|
Probab=82.84 E-value=6 Score=40.21 Aligned_cols=75 Identities=16% Similarity=0.253 Sum_probs=55.7
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cc-cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IA-ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vA-ergld 490 (858)
..+.+||.+|+++-+...++.++..... .+..+..+||+.+..++.+.++ +...|+|+|+ .. ..-.+
T Consensus 68 ~~~~viii~p~~~L~~q~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~iiv~T~~~l~~~l~~~~~~ 140 (203)
T cd00268 68 DGPQALILAPTRELALQIAEVARKLGKH---TNLKVVVIYGGTSIDKQIRKLK----RGPHIVVATPGRLLDLLERGKLD 140 (203)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHHHhcc---CCceEEEEECCCCHHHHHHHhc----CCCCEEEEChHHHHHHHHcCCCC
Confidence 4567999999999999988888755322 3778889999999888776665 3467999995 22 22366
Q ss_pred CCCeeEEE
Q psy2470 491 IPGIVYVI 498 (858)
Q Consensus 491 Ip~V~~VI 498 (858)
++++.++|
T Consensus 141 ~~~l~~lI 148 (203)
T cd00268 141 LSKVKYLV 148 (203)
T ss_pred hhhCCEEE
Confidence 77888776
|
A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region. |
| >PRK11634 ATP-dependent RNA helicase DeaD; Provisional | Back alignment and domain information |
|---|
Probab=82.45 E-value=4 Score=49.58 Aligned_cols=77 Identities=13% Similarity=0.229 Sum_probs=58.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gld 490 (858)
...++||.+||++-+..+++.+...... .+++.+..+||+.+.+.+.+.++. ...|||+|+ ...+ .++
T Consensus 73 ~~~~~LIL~PTreLa~Qv~~~l~~~~~~--~~~i~v~~~~gG~~~~~q~~~l~~----~~~IVVgTPgrl~d~l~r~~l~ 146 (629)
T PRK11634 73 KAPQILVLAPTRELAVQVAEAMTDFSKH--MRGVNVVALYGGQRYDVQLRALRQ----GPQIVVGTPGRLLDHLKRGTLD 146 (629)
T ss_pred CCCeEEEEeCcHHHHHHHHHHHHHHHhh--cCCceEEEEECCcCHHHHHHHhcC----CCCEEEECHHHHHHHHHcCCcc
Confidence 3458999999999999998888754211 247889999999998888777653 357999995 3334 377
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
+.++.+|| |
T Consensus 147 l~~l~~lVlD 156 (629)
T PRK11634 147 LSKLSGLVLD 156 (629)
T ss_pred hhhceEEEec
Confidence 88998776 5
|
|
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=81.68 E-value=1.9 Score=44.24 Aligned_cols=55 Identities=11% Similarity=0.254 Sum_probs=30.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR 273 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~ 273 (858)
+-.+|+||+||| +.+..+.+.+..- +. +.-.+..-.-|..|..-.+.+++.+|..
T Consensus 4 i~lvGptGvGKT-------Tt~aKLAa~~~~~-------~~-~v~lis~D~~R~ga~eQL~~~a~~l~vp 58 (196)
T PF00448_consen 4 IALVGPTGVGKT-------TTIAKLAARLKLK-------GK-KVALISADTYRIGAVEQLKTYAEILGVP 58 (196)
T ss_dssp EEEEESTTSSHH-------HHHHHHHHHHHHT-------T---EEEEEESTSSTHHHHHHHHHHHHHTEE
T ss_pred EEEECCCCCchH-------hHHHHHHHHHhhc-------cc-cceeecCCCCCccHHHHHHHHHHHhccc
Confidence 445799999999 3333333222111 11 1112334446777766668888888854
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >KOG1000|consensus | Back alignment and domain information |
|---|
Probab=80.97 E-value=5.1 Score=45.92 Aligned_cols=80 Identities=15% Similarity=0.196 Sum_probs=63.5
Q ss_pred hCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCC
Q psy2470 415 SMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIP 492 (858)
Q Consensus 415 ~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp 492 (858)
..++.+.+||+--..-.+.+...+.+. ++..+-+-|..+..+|...-+.|... .++ -|++---|..|||..
T Consensus 489 d~~~~KflVFaHH~~vLd~Iq~~~~~r-------~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~t 561 (689)
T KOG1000|consen 489 DAPPRKFLVFAHHQIVLDTIQVEVNKR-------KVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLT 561 (689)
T ss_pred cCCCceEEEEehhHHHHHHHHHHHHHc-------CCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeee
Confidence 345678999999999999998888876 67778889999999999998888533 333 355556688999999
Q ss_pred CeeEEEcCC
Q psy2470 493 GIVYVIDPG 501 (858)
Q Consensus 493 ~V~~VId~g 501 (858)
.-+.||=..
T Consensus 562 Aa~~VVFaE 570 (689)
T KOG1000|consen 562 AASVVVFAE 570 (689)
T ss_pred ccceEEEEE
Confidence 999998633
|
|
| >PRK11776 ATP-dependent RNA helicase DbpA; Provisional | Back alignment and domain information |
|---|
Probab=80.83 E-value=4.9 Score=46.88 Aligned_cols=75 Identities=12% Similarity=0.201 Sum_probs=57.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cccc-cCCC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IAET-SITI 491 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vAer-gldI 491 (858)
..++||.+||++-+..+++.++..... .+++.+..++|+.+.+.+...++ +...|+|+|+ ...+ .+++
T Consensus 72 ~~~~lil~PtreLa~Q~~~~~~~~~~~--~~~~~v~~~~Gg~~~~~~~~~l~----~~~~IvV~Tp~rl~~~l~~~~~~l 145 (460)
T PRK11776 72 RVQALVLCPTRELADQVAKEIRRLARF--IPNIKVLTLCGGVPMGPQIDSLE----HGAHIIVGTPGRILDHLRKGTLDL 145 (460)
T ss_pred CceEEEEeCCHHHHHHHHHHHHHHHhh--CCCcEEEEEECCCChHHHHHHhc----CCCCEEEEChHHHHHHHHcCCccH
Confidence 347999999999999998888754211 23688999999999998877776 3467999994 4443 5788
Q ss_pred CCeeEEE
Q psy2470 492 PGIVYVI 498 (858)
Q Consensus 492 p~V~~VI 498 (858)
.++++||
T Consensus 146 ~~l~~lV 152 (460)
T PRK11776 146 DALNTLV 152 (460)
T ss_pred HHCCEEE
Confidence 8888877
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 858 | ||||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 3e-34 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 2e-23 | ||
| 3kx2_B | 767 | Crystal Structure Of Prp43p In Complex With Adp Len | 7e-16 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 3e-34 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 2e-23 | ||
| 2xau_A | 773 | Crystal Structure Of The Prp43p Deah-Box Rna Helica | 7e-16 | ||
| 3i4u_A | 270 | Crystal Structure Analysis Of A Helicase Associated | 2e-18 | ||
| 3llm_A | 235 | Crystal Structure Analysis Of A Rna Helicase Length | 6e-11 |
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|3KX2|B Chain B, Crystal Structure Of Prp43p In Complex With Adp Length = 767 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|2XAU|A Chain A, Crystal Structure Of The Prp43p Deah-Box Rna Helicase In Complex With Adp Length = 773 | Back alignment and structure |
|
| >pdb|3I4U|A Chain A, Crystal Structure Analysis Of A Helicase Associated Domain Length = 270 | Back alignment and structure |
|
| >pdb|3LLM|A Chain A, Crystal Structure Analysis Of A Rna Helicase Length = 235 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 270 bits (693), Expect = 5e-79
Identities = 90/207 (43%), Positives = 130/207 (62%), Gaps = 14/207 (6%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+R LK+II SAT+DAE+ +++N +A +L+V G YPV +YY+ + +Y+ +
Sbjct: 237 RRPDLKIIIMSATLDAEKFQRYFN-----DAPLLAVPGRTYPVELYYTPEFQRDYLDSAI 291
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQY----HNQREDLKLLILPMHGSLPNN 462
T ++IH + GDIL F+ G ++IE + + + L + P++GSLP +
Sbjct: 292 RTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPH 351
Query: 463 EQIKVFRPTP-----RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517
+Q ++F P P R RK+VI+TNIAETS+TI GIVYV+DPGF K + +NP SL
Sbjct: 352 QQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESL 411
Query: 518 VVVPISKASAVQRAGRAGRVRSGHVYR 544
+V PISKASA QRAGRAGR R G +R
Sbjct: 412 LVSPISKASAQQRAGRAGRTRPGKCFR 438
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 202 bits (515), Expect = 9e-55
Identities = 53/110 (48%), Positives = 77/110 (70%), Gaps = 2/110 (1%)
Query: 587 QYLLE-AGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVT 645
Q++L + + T+PRR++ S+A RV+EE+ LG VGY+IRF++ T+ T
Sbjct: 128 QFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENKTSNK-T 186
Query: 646 KIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
+KYMT+G+L+RE M D L +YS I+LDE HERT+ TDILMGLLK+++K
Sbjct: 187 ILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVK 236
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 156 bits (397), Expect = 1e-39
Identities = 47/163 (28%), Positives = 87/163 (53%), Gaps = 13/163 (7%)
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
+F+CS EI +I+++L V ++FI+P+ +A + F GD +TLLN++ ++
Sbjct: 535 EFQCSQEILTIVAMLSVPNVFIRPTKDKK--RADDAKNIFAHPDGDHITLLNVYHAFKSD 592
Query: 760 E----NKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTS----PRNTNAVLKCL 811
E ++C ++ NY+ L A +++Q+ L+ + ++ L T+ P+ + + K L
Sbjct: 593 EAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKAL 652
Query: 812 TNGFFSNAAYLHYSG-VYRTVRGNEDLYIHPSSVLYTLQQPQC 853
+GFF A Y TV+ N+D+ IHPS+VL +
Sbjct: 653 ASGFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG--HDAEW 693
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 146 bits (371), Expect = 2e-36
Identities = 46/108 (42%), Positives = 65/108 (60%), Gaps = 3/108 (2%)
Query: 46 RLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALEL 104
RLYTE +F +L E + PE+ R+ LSS VL+LK LGI +++ F F PP + + ALE
Sbjct: 438 RLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEE 497
Query: 105 LYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVLDSAVEIL 152
L L +D GNLT P+G ++ PL P+ A +L+ S + EIL
Sbjct: 498 LNYLACLDDEGNLT-PLGRLASQFPLDPMLAVMLIGSFE-FQCSQEIL 543
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* Length = 773 | Back alignment and structure |
|---|
Score = 60.4 bits (147), Expect = 2e-09
Identities = 19/38 (50%), Positives = 27/38 (71%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILM 38
MT+G+L+ D + +YS I+LD+ HERT+ TDILM
Sbjct: 191 MTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILM 228
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
Score = 178 bits (454), Expect = 8e-51
Identities = 47/154 (30%), Positives = 87/154 (56%), Gaps = 3/154 (1%)
Query: 700 DFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQ 759
CS+E+ +I+S+L VQ++F +P A + F +GD LTLL ++ ++
Sbjct: 64 HLGCSEEMLTIVSMLSVQNVFYRPKDKQA--LADQKKAKFHQTEGDHLTLLAVYNSWKNN 121
Query: 760 ENKKQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNA 819
+ +C++ F + L+RA +++ QM+ ++ + + +V+ ++T V K + +GFF NA
Sbjct: 122 KFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNA 181
Query: 820 AYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQC 853
A YRT+ + +YIHPSS L+ +QP+
Sbjct: 182 AKKDPQEGYRTLIDQQVVYIHPSSALFN-RQPEW 214
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} Length = 270 | Back alignment and structure |
|---|
Score = 82.7 bits (205), Expect = 1e-17
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 4/75 (5%)
Query: 79 LGIHNILRFSFPSPP-PAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKV 137
+G F + P + L A+E LY+LGA+D G LT +G MAE PL P+ K+
Sbjct: 1 MGD-RGPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKM 58
Query: 138 LLSSGSVLDSAVEIL 152
L+ S L + E+L
Sbjct: 59 LIMSVH-LGCSEEML 72
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 166 bits (423), Expect = 5e-47
Identities = 37/112 (33%), Positives = 65/112 (58%), Gaps = 5/112 (4%)
Query: 587 QYLLEAGWCYDTKL---IGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTED 643
Q++L+ D I +T+PRRIS S+A RV+ E G + GY++RF+
Sbjct: 95 QFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEEPGKSCGYSVRFESILPRP 154
Query: 644 VTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
I + T G+L+R++ + +R S +++DE+HER I TD L+ +L+ +++
Sbjct: 155 HASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} Length = 235 | Back alignment and structure |
|---|
Score = 51.9 bits (125), Expect = 2e-07
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILM 38
T G+L+ + + S +++D++HER I TD L+
Sbjct: 161 CTVGVLLR--KLEAGIRGISHVIVDEIHERDINTDFLL 196
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 143 bits (361), Expect = 1e-36
Identities = 30/200 (15%), Positives = 54/200 (27%), Gaps = 35/200 (17%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+ + I +AT P+ P ++ G
Sbjct: 138 EMGEAAAIFMTATPPGSTD---------------PFPQSNSPIEDIEREIPERSWNTGF- 181
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK 466
+ G + FV ++ I L+ ++ +
Sbjct: 182 -----DWITDYQGKTVWFVPSIKAGNDIANCLR-------KSGKRVIQLSRKT----FDT 225
Query: 467 VFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW--FNPNTLTNSLVVVPISK 524
+ T V+ T+I+E VIDP + +P++
Sbjct: 226 EYPKTKLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 284
Query: 525 ASAVQRAGRAGRVRSGHVYR 544
ASA QR GR GR + +
Sbjct: 285 ASAAQRRGRIGRNPAQEDDQ 304
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A Length = 451 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 9e-24
Identities = 19/114 (16%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGY-TIRFDDCTTEDVT 645
++ + I P R+ +A + E LR G + Y T T
Sbjct: 38 PSIVREALLRRLR-TLILAPTRV----VAAEMEEALR---GLPIRYQTPAVKSDHTGR-E 88
Query: 646 KIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M +++ + Y++I++DE H + G + ++ E
Sbjct: 89 IVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEA 142
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 142 bits (359), Expect = 2e-35
Identities = 30/200 (15%), Positives = 53/200 (26%), Gaps = 35/200 (17%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
+ + I +AT P+ P
Sbjct: 305 EMGEAAAIFMTATPPGSTD---------------PFPQSNSPIEDIEREIPE--RSWNTG 347
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK 466
I ++ G + FV ++ I L+ ++ +
Sbjct: 348 FDWITDYQ----GKTVWFVPSIKAGNDIANCLR-------KSGKRVIQLSRKT----FDT 392
Query: 467 VFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW--FNPNTLTNSLVVVPISK 524
+ T V+ T+I+E VIDP + +P++
Sbjct: 393 EYPKTKLTDWDFVVTTDISEMGANF-RAGRVIDPRRCLKPVILTDGPERVILAGPIPVTP 451
Query: 525 ASAVQRAGRAGRVRSGHVYR 544
ASA QR GR GR + +
Sbjct: 452 ASAAQRRGRIGRNPAQEDDQ 471
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A Length = 618 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 5e-23
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 8/113 (7%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
++ I P R+ +A + E LR G + Y
Sbjct: 205 PSIVREALKRR-LRTLILAPTRV----VAAEMEEALR---GLPIRYQTPAVKSDHTGREI 256
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M +++ + Y++I++DE H + G + ++ E
Sbjct: 257 VDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEA 309
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-33
Identities = 29/215 (13%), Positives = 56/215 (26%), Gaps = 42/215 (19%)
Query: 336 MKAFAEQLKPLKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSN 395
+ A + + I+ +AT G SN
Sbjct: 116 IAARGWAAHRARANESATILMTATPP----------------------GTSDEFPH--SN 151
Query: 396 DPVVNYVQGVVDTAIKIHESM---PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLI 452
+ + + F+ + + L+ +
Sbjct: 152 GEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLR-------KAGKSV 204
Query: 453 LPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF-VKARWFNPN 511
+ ++ E + ++AT+IAE + + V+D K +
Sbjct: 205 VVLNRKTFEREY----PTIKQKKPDFILATDIAEMGANL-CVERVLDCRTAFKPVLVDEG 259
Query: 512 TLTNSLVVVPISKASAVQRAGRAGRVRSGH--VYR 544
+ IS +SA QR GR GR + Y
Sbjct: 260 RKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYY 294
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* Length = 440 | Back alignment and structure |
|---|
Score = 98.0 bits (244), Expect = 1e-21
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 8/114 (7%)
Query: 585 FFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDV 644
F +L + + P R+ + + + E G V + +
Sbjct: 25 FLPQILAECARRRLR-TLVLAPTRV----VLSEMKEAFH---GLDVKFHTQAFSAHGSGR 76
Query: 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698
I M L M+ + + VI++DE H + G + E
Sbjct: 77 EVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANE 130
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 136 bits (344), Expect = 2e-33
Identities = 38/200 (19%), Positives = 61/200 (30%), Gaps = 40/200 (20%)
Query: 348 RTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVD 407
+++++AT NI LS G + Y + +
Sbjct: 348 AGARLVVLATATPPGSVTVPHPNI----EEVALSNTG------------EIPFYGKAIPI 391
Query: 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467
AI+ G L F ++ + + L L + + + L +
Sbjct: 392 EAIR------GGRHLIFCHSKKKCDELAAKLS-------GLGINAVAYYRGLDVSVI--- 435
Query: 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN---TLTNSLVVVPISK 524
P +V+AT+ T T VID + + + T T VP
Sbjct: 436 ----PTIGDVVVVATDALMTGYTG-DFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDA 490
Query: 525 ASAVQRAGRAGRVRSGHVYR 544
S QR GR GR R G
Sbjct: 491 VSRSQRRGRTGRGRRGIYRF 510
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 101 bits (252), Expect = 4e-22
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 13/114 (11%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
G+ + + P + +S+ + + +R
Sbjct: 251 AAYAAQGY-----KVLVLNPSVAATLGFGAYMSKAHG--IDPNIRTGVRTITTGA----P 299
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERD 700
+ Y T G + + Y +I+ DE H T + +G + +
Sbjct: 300 VTYSTYGKFLADGGCS--GGAYDIIICDECHSTDSTTILGIGTVLDQAETAGAR 351
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4a92_A* 1cu1_A 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A 8ohm_A 2f55_A 1jr6_A 1onb_A Length = 666 | Back alignment and structure |
|---|
Score = 44.2 bits (104), Expect = 1e-04
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 1 MTEGILIENDDHDPSVEKYSVIMLDKVHERTIFTDILMECSRKFSR 46
T G + D S Y +I+ D+ H T + + +
Sbjct: 303 STYGKFL--ADGGCSGGAYDIIICDECHSTDSTTILGIGTVLDQAE 346
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 133 bits (335), Expect = 3e-33
Identities = 34/202 (16%), Positives = 56/202 (27%), Gaps = 38/202 (18%)
Query: 346 LKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSV-YYSNDPVVNYVQG 404
++ + I +AT G P + + +
Sbjct: 139 VELGEAAAIFMTATPP----------------------GTTDPFPDSNAPIHDLQDEIPD 176
Query: 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ 464
++ + G + FV ++ I L+ ++ ++ + E
Sbjct: 177 RAWSSGYEWITEYAGKTVWFVASVKMGNEIAMCLQ-------RAGKKVIQLNRKSYDTEY 229
Query: 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF-VKARWFN-PNTLTNSLVVVPI 522
VI T+I+E G VID VK PI
Sbjct: 230 ----PKCKNGDWDFVITTDISEMGANF-GASRVIDCRKSVKPTILEEGEGRVILGNPSPI 284
Query: 523 SKASAVQRAGRAGRVRSGHVYR 544
+ ASA QR GR GR V
Sbjct: 285 TSASAAQRRGRVGR-NPNQVGD 305
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A Length = 459 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 7e-24
Identities = 18/113 (15%), Positives = 40/113 (35%), Gaps = 8/113 (7%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
+++ + + P R+ +A ++E LR G V Y +
Sbjct: 40 PQIIKDAIQQRLR-TAVLAPTRV----VAAEMAEALR---GLPVRYQTSAVQREHQGNEI 91
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M L +M+ + Y++ ++DE H + G + ++ E
Sbjct: 92 VDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEA 144
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 133 bits (336), Expect = 2e-32
Identities = 34/201 (16%), Positives = 54/201 (26%), Gaps = 35/201 (17%)
Query: 346 LKRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGV 405
++ + I +AT PV + +
Sbjct: 359 VEAGEAAAIFMTATPPGTSD---------------PFPDTNSPVHDVS--SEIPDRAWSS 401
Query: 406 VDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465
I + G + FV ++ I L+ ++ ++
Sbjct: 402 GFEWITDYA----GKTVWFVASVKMSNEIAQCLQ-------RAGKRVIQLNRKS----YD 446
Query: 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF-VKARWFNP-NTLTNSLVVVPIS 523
+ VI T+I+E G VID VK + V I+
Sbjct: 447 TEYPKCKNGDWDFVITTDISEMGANF-GASRVIDCRKSVKPTILDEGEGRVILSVPSAIT 505
Query: 524 KASAVQRAGRAGRVRSGHVYR 544
ASA QR GR GR S
Sbjct: 506 SASAAQRRGRVGRNPSQIGDE 526
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} Length = 673 | Back alignment and structure |
|---|
Score = 98.1 bits (244), Expect = 3e-21
Identities = 15/113 (13%), Positives = 38/113 (33%), Gaps = 8/113 (7%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
+++ + P R+ +A ++E LR + ++
Sbjct: 260 PQIIKDAIQKR-LRTAVLAPTRV----VAAEMAEALRGLPVRYLTPAVQR---EHSGNEI 311
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M L +M+ + Y++ ++DE H + G + ++ E
Sbjct: 312 VDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIATRVEAGEA 364
|
| >3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe} Length = 207 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 4e-32
Identities = 37/223 (16%), Positives = 70/223 (31%), Gaps = 37/223 (16%)
Query: 138 LLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDF 197
L G V E +++ L D GP+T + + + +
Sbjct: 4 LYLLGVVPSRRFEAVVNSLSKTLD----GPKTILEFWVVYRPK----------------- 42
Query: 198 PDMPYQLRYIGQPEMGPLLLRVRRALDFPDM------PYQLRYIGQPEMGVGDKARPTIV 251
D+P L QP+ L + D D + + G E + + I
Sbjct: 43 -DVPPNL--PRQPDSWLRLCSNIESHDETDTEWSKNTQWSMYLEGNSE--PKREDKCGIR 97
Query: 252 RSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVE 311
+ + +V EF+ +MG EYI +G + + + + SQ +
Sbjct: 98 PVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLEYFFFDTTVRIYQTLIPSQQRSIKPPFH 157
Query: 312 PI--SQSYLVELSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352
P+ Q +++ + + M L +K L
Sbjct: 158 PMNEEQPWILHVYTHVADASNQ--VAMAKAEANLTKVKT-LLS 197
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 125 bits (315), Expect = 8e-31
Identities = 34/200 (17%), Positives = 54/200 (27%), Gaps = 36/200 (18%)
Query: 347 KRTQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVV 406
I +AT + P+ + P
Sbjct: 121 SMGDAGAIFMTATPPGTTE---------------AFPPSNSPIIDEETRIPD--KAWNSG 163
Query: 407 DTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK 466
I + G + FV ++Q I L+ +L ++ +E
Sbjct: 164 YEWITEFD----GRTVWFVHSIKQGAEIGTCLQ-------KAGKKVLYLNRKTFESEY-- 210
Query: 467 VFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKAS 526
VI T+I+E VIDP + + + I+ AS
Sbjct: 211 --PKCKSEKWDFVITTDISEMGANF-KADRVIDPRKTIKP-ILLDGRVSMQGPIAITPAS 266
Query: 527 AVQRAGRAGRVRSGH--VYR 544
A QR GR GR +Y
Sbjct: 267 AAQRRGRIGRNPEKLGDIYA 286
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A Length = 431 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 5e-24
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 10/114 (8%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGY-TIRFDDCTTEDVT 645
L+ I P R+ +A+ + E LR G + Y T T +
Sbjct: 21 PQLVREAVK-KRLRTVILAPTRV----VASEMYEALR---GEPIRYMTPAVQSERTGN-E 71
Query: 646 KIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ +M +++ + Y++ ++DE H + G ++ + +
Sbjct: 72 IVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDA 125
|
| >2hzm_B RNA polymerase II mediator complex subunit 18; beta barrel, channel, transcription; 2.40A {Saccharomyces cerevisiae} PDB: 2hzs_B 3rj1_E Length = 317 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-11
Identities = 22/131 (16%), Positives = 49/131 (37%), Gaps = 11/131 (8%)
Query: 224 DFPDMPYQLRYIGQPEMGVGDK-ARPTIVRSSIDVAC--SCTVVEFLTEMGCRMDFEYIS 280
+ P+ L+ P G + TI + I + + +V + +G +F+Y++
Sbjct: 157 NESCSPWSLQISDIPAAGNNRSVSMQTIAETIILSSAGKNSSVSSLMNGLGYVFEFQYLT 216
Query: 281 RGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDV-----IGED 335
G F L+ ++ K+ Q + S +L++ I G D+
Sbjct: 217 IGVKFFMKH--GLILELQKIWQ-IEEAGNSQITSGGFLLKAYINVSRGTDIDRINYTETV 273
Query: 336 MKAFAEQLKPL 346
+ ++L+
Sbjct: 274 LMNLKKELQGY 284
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 61.8 bits (149), Expect = 7e-10
Identities = 89/621 (14%), Positives = 194/621 (31%), Gaps = 162/621 (26%)
Query: 329 QDVIGEDMKAFAEQLKPLKRTQ--LKLIISSATVDAEEICQFYNISASSNATILSVKGHL 386
+D++ AF + K Q K I+S +D I + + T+ L
Sbjct: 19 KDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEID--HI---IMSKDAVSGTLR-----L 67
Query: 387 YPVSVYYSNDPVVNYVQGVVD-------TAIKIHESMPVGDILAFVIGLEQIEHIIGILK 439
+ + + V +V+ V+ + IK + P ++ +++ + +
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 440 QYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR----AMR---KIVIATNIA---ETSI 489
+Y+ R L + + + RP + K +A ++ +
Sbjct: 128 KYNVSRLQPYLKL---------RQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 490 TIPGIVYVIDPGFVKARWFN------PNTLTNSL-----VVVPISKASAVQRAGRAGRVR 538
+ ++ W N P T+ L + P + + + R+
Sbjct: 179 KMDFKIF----------WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIH 228
Query: 539 SGHVYRKNFMYNRLFIHFC--VSRNIPTIPNDPK-----DVKCDVMFHKVFFSFFQYLLE 591
S + + ++ + + C V N+ + K ++ C ++
Sbjct: 229 SIQAELRRLLKSKPYEN-CLLVLLNV----QNAKAWNAFNLSCKILL------------- 270
Query: 592 AGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGH--TVGYTIRFDDCTTED----VT 645
T+ +T+ +S + + + TL +++ DC +D V
Sbjct: 271 -----TTRFKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 646 KIKYMTEGI---LMREMM----------TDPLLR--KYSVIMLDEVHER------TIF-- 682
I +R+ + D L + S+ +L+ R ++F
Sbjct: 324 TTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 683 -TDILMGLLKKILKDKERDFECSDEIASIL---SLLQVQDIFIKPSSGALSLKARVLRRN 738
I LL I D + + + L SL++ Q P +S+ + L
Sbjct: 384 SAHIPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQ-----PKESTISIPSIYLELK 436
Query: 739 FEVEQGD-----LLTLLNIFKFYEKQENKKQFCHKYFFNYKV--LKRA--AELKN--QMI 787
++E ++ NI K ++ + + +YF+++ LK E +M+
Sbjct: 437 VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV 496
Query: 788 LL--------LKKSSIPL--VTSPRNTNAVLKCLTNGFFSNAAYLHYSGVYRTV-----R 832
L ++ S S NT LK N Y + + +
Sbjct: 497 FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP--KYERLVNAILDFLPK 554
Query: 833 GNEDLYIHPSS--VLYTLQQP 851
E+L + + L
Sbjct: 555 IEENLICSKYTDLLRIALMAE 575
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 8e-08
Identities = 98/626 (15%), Positives = 188/626 (30%), Gaps = 185/626 (29%)
Query: 1 MTEGILIEND-DH---DPSVEKYSVIMLDKV---HERTI--FTDILMECSRKFSRLYTEA 51
M + IL + + DH ++ + + E + F + ++ + KF L +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKF--LMSPI 98
Query: 52 SFSQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAM 111
E P M +L +++ P LR AL L +
Sbjct: 99 K----TEQRQPSMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKNV 153
Query: 112 DVNGNL----TKPVGETMAEMPLHPIHA-KVL-LSSGSVLDSAVEILLHRLRGLCDNVDS 165
++G L T + + K+ L+ + E +L L+ L +D
Sbjct: 154 LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP--ETVLEMLQKLLYQIDP 211
Query: 166 GPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDF 225
+ DH +R + Q L R+ ++ + + LL+ L
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC--------------LLV-----LL- 251
Query: 226 PDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVAC-------SCTVVEFLT-EMGCRMDFE 277
+ V + + +++C V +FL+ + +
Sbjct: 252 -N--------------VQN---AKAWN-AFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 278 YISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVELSILAPGGQDVIGE--- 334
+ S +K L+ K +P D E ++ + LSI I E
Sbjct: 293 HHSMT--LTPDEVKSLLLKYLDC---RPQDLPREVLTTNPRR-LSI--------IAESIR 338
Query: 335 DMKAFAEQLKPLKRTQLKLIISS--ATVDAEEICQFY----------NISASSNATILSV 382
D A + K + +L II S ++ E + + +I +LS+
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI----LLSL 394
Query: 383 KGHLYPVSVYYSNDPVVN--YVQGVVD-----TAIKIHESMPVGDI-LAFVIGLEQIE-- 432
++ + VVN + +V+ + I I I L + LE
Sbjct: 395 ---IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP------SIYLELKVKLENEYAL 445
Query: 433 HIIGILKQYHNQRE-DLKLLILPM-----------HGSLPNNEQIKVFRPTPRAMRKIVI 480
H I+ Y+ + D LI P H L N E +
Sbjct: 446 HRS-IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH--LKNIEHPERMTLFRM------- 495
Query: 481 ATNIAETSITIPGIVYVIDPGFVKAR-------WFNPNTLTNSLVVVPISKASAVQRAGR 533
V++ D F++ + W ++ N+L +
Sbjct: 496 --------------VFL-DFRFLEQKIRHDSTAWNASGSILNTLQQL------------- 527
Query: 534 AGRVRSGHVYRKNFMYNRL---FIHF 556
+ ++ + Y RL + F
Sbjct: 528 --KFYKPYICDNDPKYERLVNAILDF 551
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 3e-06
Identities = 38/216 (17%), Positives = 74/216 (34%), Gaps = 53/216 (24%)
Query: 682 FTDILMGLLKKILKDKERDFEC---SDEIASILSLLQVQDIFIKPS--SGALSLKARVLR 736
+ DIL + +F+C D SILS ++ I + SG L L +L
Sbjct: 18 YKDILSVFEDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLS 73
Query: 737 RNFEVEQ---GDLLT-----LLN-----------IFKFYEKQENK----KQFCHKYFFN- 772
+ E+ Q ++L L++ + + Y +Q ++ Q KY +
Sbjct: 74 KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSR 133
Query: 773 ---YKVLKRAA-ELKNQMILLLK------KSSIPLVTSPRNTNAVLKCLTNGFFSNAAYL 822
Y L++A EL+ +L+ K+ + + V + F +L
Sbjct: 134 LQPYLKLRQALLELRPAKNVLIDGVLGSGKTW--VALDVCLSYKVQCKMDFKIF----WL 187
Query: 823 HYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858
+ E + +LY + + +
Sbjct: 188 NLKNCNSP----ETVLEMLQKLLYQIDPNWTSRSDH 219
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 100.0 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 100.0 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 100.0 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 100.0 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 100.0 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 100.0 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 100.0 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 100.0 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 100.0 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 100.0 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 99.98 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 99.98 | |
| 2i4i_A | 417 | ATP-dependent RNA helicase DDX3X; DEAD, structural | 99.98 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 99.98 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 99.97 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 99.97 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 99.97 | |
| 3sqw_A | 579 | ATP-dependent RNA helicase MSS116, mitochondrial; | 99.97 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 99.97 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 99.97 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 99.97 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 99.96 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 99.96 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 99.96 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 99.96 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 99.96 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 99.96 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.96 | |
| 1tf5_A | 844 | Preprotein translocase SECA subunit; ATPase, helic | 99.96 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 99.96 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 99.96 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 99.95 | |
| 3oiy_A | 414 | Reverse gyrase helicase domain; topoisomerase, DNA | 99.95 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 99.95 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 99.95 | |
| 2fsf_A | 853 | Preprotein translocase SECA subunit; ATPase, DNA-R | 99.95 | |
| 4f92_B | 1724 | U5 small nuclear ribonucleoprotein 200 kDa helica; | 99.95 | |
| 2ykg_A | 696 | Probable ATP-dependent RNA helicase DDX58; hydrola | 99.95 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 99.95 | |
| 4a2p_A | 556 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.94 | |
| 1nkt_A | 922 | Preprotein translocase SECA 1 subunit; preprotein | 99.94 | |
| 3tbk_A | 555 | RIG-I helicase domain; DECH helicase, ATP binding, | 99.93 | |
| 4ddu_A | 1104 | Reverse gyrase; topoisomerase, DNA supercoiling, a | 99.93 | |
| 4a2q_A | 797 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.93 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 99.92 | |
| 1gku_B | 1054 | Reverse gyrase, TOP-RG; topoisomerase, DNA superco | 99.92 | |
| 4a2w_A | 936 | RIG-I, retinoic acid inducible protein I; hydrolas | 99.92 | |
| 4gl2_A | 699 | Interferon-induced helicase C domain-containing P; | 99.92 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 99.92 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 99.91 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 99.89 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 99.88 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.87 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 99.86 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 99.85 | |
| 2rb4_A | 175 | ATP-dependent RNA helicase DDX25; rossmann fold, s | 99.84 | |
| 2hjv_A | 163 | ATP-dependent RNA helicase DBPA; parallel alpha-be | 99.84 | |
| 3jux_A | 822 | Protein translocase subunit SECA; protein transloc | 99.84 | |
| 1fuk_A | 165 | Eukaryotic initiation factor 4A; helicase, DEAD-bo | 99.84 | |
| 1t5i_A | 172 | C_terminal domain of A probable ATP-dependent RNA | 99.83 | |
| 2p6n_A | 191 | ATP-dependent RNA helicase DDX41; DEAD, structural | 99.82 | |
| 2jgn_A | 185 | DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosp | 99.81 | |
| 2d7d_A | 661 | Uvrabc system protein B; helicase, protein-DNA-ADP | 99.8 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 99.79 | |
| 2yjt_D | 170 | ATP-dependent RNA helicase SRMB, regulator of ribo | 99.65 | |
| 1c4o_A | 664 | DNA nucleotide excision repair enzyme UVRB; uvrabc | 99.74 | |
| 3dmq_A | 968 | RNA polymerase-associated protein RAPA; SWF2/SNF2, | 99.74 | |
| 2w00_A | 1038 | HSDR, R.ECOR124I; ATP-binding, DNA-binding, restri | 99.69 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 99.64 | |
| 1z63_A | 500 | Helicase of the SNF2/RAD54 hamily; protein-DNA com | 99.61 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 99.49 | |
| 1z3i_X | 644 | Similar to RAD54-like; recombination ATPase helica | 99.46 | |
| 3i4u_A | 270 | ATP-dependent RNA helicase DHX8; splicing, ATP-bin | 99.43 | |
| 3mwy_W | 800 | Chromo domain-containing protein 1; SWI2/SNF2 ATPa | 99.38 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 99.37 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 99.37 | |
| 1z5z_A | 271 | Helicase of the SNF2/RAD54 family; hydrolase, reco | 99.36 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 99.33 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 99.32 | |
| 2ipc_A | 997 | Preprotein translocase SECA subunit; nucleotide bi | 99.32 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 99.31 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 99.3 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 99.3 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 99.29 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 99.24 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 99.24 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 99.23 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 99.2 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 99.18 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 99.18 | |
| 2vl7_A | 540 | XPD; helicase, unknown function; 2.25A {Sulfolobus | 99.04 | |
| 3c0t_A | 207 | Mediator of RNA polymerase II transcription subuni | 98.61 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 98.39 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 98.38 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 98.36 | |
| 3crv_A | 551 | XPD/RAD3 related DNA helicase; XPD helicase DNA re | 98.33 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 98.32 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 97.77 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 97.75 | |
| 3i32_A | 300 | Heat resistant RNA dependent ATPase; RNA helicase, | 96.36 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.34 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 96.26 | |
| 3eaq_A | 212 | Heat resistant RNA dependent ATPase; DEAD box RNA | 95.67 | |
| 4a15_A | 620 | XPD helicase, ATP-dependent DNA helicase TA0057; h | 92.6 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 85.88 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 84.24 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 83.93 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 82.45 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 82.21 |
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-85 Score=793.39 Aligned_cols=552 Identities=30% Similarity=0.492 Sum_probs=488.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++|+|||||| +++|.+...... ..|. ...+++++|+|++|.|++++++++++..+|.. +||.+
T Consensus 114 i~gpTGSGKT-------tllp~ll~~~~~----~~~~---g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~---vG~~i 176 (773)
T 2xau_A 114 FVGETGSGKT-------TQIPQFVLFDEM----PHLE---NTQVACTQPRRVAAMSVAQRVAEEMDVKLGEE---VGYSI 176 (773)
T ss_dssp EECCTTSSHH-------HHHHHHHHHHHC----GGGG---TCEEEEEESCHHHHHHHHHHHHHHTTCCBTTT---EEEEE
T ss_pred EECCCCCCHH-------HHHHHHHHHhcc----ccCC---CceEEecCchHHHHHHHHHHHHHHhCCchhhe---eccee
Confidence 5799999999 456655322111 1111 12479999999999999999999999999999 99999
Q ss_pred eccceeecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
++++.....++|+|+|||++++ +..+..+.++.+| |+++ .|+++++++.+. ..+++.|+++||
T Consensus 177 ~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld----~d~~~~~l~~l~-----~~~~~~~iIl~S 247 (773)
T 2xau_A 177 RFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLA----TDILMGLLKQVV-----KRRPDLKIIIMS 247 (773)
T ss_dssp TTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHH----HHHHHHHHHHHH-----HHCTTCEEEEEE
T ss_pred ccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccc----hHHHHHHHHHHH-----HhCCCceEEEEe
Confidence 9988877889999999999999 7777888888877 7999 999999999987 445789999999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGI 437 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~ 437 (858)
||++.+.+++||. +++++.++++.+|++++|...+..++.+..+..+.+++...+.|++|||++|+++|+.+++.
T Consensus 248 AT~~~~~l~~~~~-----~~~vi~v~gr~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~ 322 (773)
T 2xau_A 248 ATLDAEKFQRYFN-----DAPLLAVPGRTYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRK 322 (773)
T ss_dssp SCSCCHHHHHHTT-----SCCEEECCCCCCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHH
T ss_pred ccccHHHHHHHhc-----CCCcccccCcccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHH
Confidence 9999999999998 68999999999999999998888888888888888888887789999999999999999999
Q ss_pred HHHhcc----CCCCcceEEEeccCCCCHHHHHHhcCCCC-----CCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 438 LKQYHN----QREDLKLLILPMHGSLPNNEQIKVFRPTP-----RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 438 L~~~~~----~~~~~~~~v~~LHg~l~q~~r~~v~~~f~-----~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
|++... .....++.+.++||+|++++|.++++.|+ +|.++||||||+||+|||||+|++|||+|+++.+.|
T Consensus 323 L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~y 402 (773)
T 2xau_A 323 ISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNGRPGRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVY 402 (773)
T ss_dssp HHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSSSCCEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEE
T ss_pred HHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCCCCceEEEEeCcHHHhCcCcCCeEEEEeCCCccceee
Confidence 985210 00124899999999999999999999999 999999999999999999999999999999999999
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh--hhH-hhhhhhhhccCCCCCCCCCCCccccCcccchhhhHH
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN--FMY-NRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSF 585 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~--~~~-~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~ 585 (858)
|++.|++.|.+.|+|+++|.||+|||||.++|.||+|| ++| +.+++ + +. |||++++|.
T Consensus 403 d~~~g~~~L~~~p~S~~s~~QR~GRaGR~~~G~~~~l~~~~~~~~~l~~-----~---~~---pEi~r~~L~-------- 463 (773)
T 2xau_A 403 NPRIRVESLLVSPISKASAQQRAGRAGRTRPGKCFRLYTEEAFQKELIE-----Q---SY---PEILRSNLS-------- 463 (773)
T ss_dssp ETTTTEEEEEEEECCHHHHHHHHHGGGSSSSEEEEESSCHHHHHHTSCS-----S---CC---CGGGGSCCH--------
T ss_pred ccccCccccccccCCHHHHHhhccccCCCCCCEEEEEecHHHhcccccc-----c---CC---CccccCcHH--------
Confidence 99999999999999999999999999999899999999 566 45666 6 66 999999999
Q ss_pred HHHHHhhhHhHhHhhhCCCCCcccccCCc----hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhccc
Q psy2470 586 FQYLLEAGWCYDTKLIGITEPRRISVTSL----ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMT 661 (858)
Q Consensus 586 ~~~l~~~~~~l~~~~~~~~~~~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~ 661 (858)
+.+|+++.+++.++..+.|+++ ++..|++.|..+|++ + +++. +| ++|+.|+++|+
T Consensus 464 -------~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgal-----d-~~~~---lT-----~lG~~~a~~pl 522 (773)
T 2xau_A 464 -------STVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACL-----D-DEGN---LT-----PLGRLASQFPL 522 (773)
T ss_dssp -------HHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSB-----C-TTSC---BC-----HHHHHHTTSSS
T ss_pred -------HHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCc-----c-cCCC---cC-----hhhhhhccccC
Confidence 9999999999999988988876 789999999999999 6 5555 88 99999999999
Q ss_pred CcccccceeEeecccccccchhhHHHHHHHHHHhhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhcccc
Q psy2470 662 DPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEV 741 (858)
Q Consensus 662 dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~ 741 (858)
||.++++ ++. +..++|.+++++|+|+|+++++|+.|.+.+ .+++.+|++|.+
T Consensus 523 ~p~~~~~------------------------l~~--~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~--~~~~~~~~~f~~ 574 (773)
T 2xau_A 523 DPMLAVM------------------------LIG--SFEFQCSQEILTIVAMLSVPNVFIRPTKDK--KRADDAKNIFAH 574 (773)
T ss_dssp CHHHHHH------------------------HHH--GGGGTCHHHHHHHHHHHTSCCCBCCCTTCH--HHHHHHHHTTCC
T ss_pred CHHHHHH------------------------HHh--hcccCchhHHHHHHHhcccCCcccCChHHH--HHHHHHHHhccC
Confidence 9999999 888 889999999999999999999999998877 778888999999
Q ss_pred CCCchhhHHHHHHHHHHcc---ch-HHHHHhccCCHHHHHHHHHHHHHHHHHHHhcCCCCCCCC----CChHHHHHHHHh
Q psy2470 742 EQGDLLTLLNIFKFYEKQE---NK-KQFCHKYFFNYKVLKRAAELKNQMILLLKKSSIPLVTSP----RNTNAVLKCLTN 813 (858)
Q Consensus 742 ~~gDhltlLnif~~w~~~~---~~-~~wC~~~~Ln~~~L~~a~~ir~QL~~~l~~~~~~~~~~~----~~~~~i~k~l~a 813 (858)
..|||+++||+|++|.+.+ .+ ++||++||||+++|++|.++|.||.++|++.|++..++. .++..|++|||+
T Consensus 575 ~~~D~~~~l~~~~~~~~~~~~~~~~~~~c~~~~l~~~~l~~~~~~~~ql~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 654 (773)
T 2xau_A 575 PDGDHITLLNVYHAFKSDEAYEYGIHKWCRDHYLNYRSLSAADNIRSQLERLMNRYNLELNTTDYESPKYFDNIRKALAS 654 (773)
T ss_dssp TTBHHHHHHHHHHHHTSHHHHHHCHHHHHHHTTBCHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTSTTHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhccccchHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCCCcCCCCCCchhhHHHHHHHHHH
Confidence 9999999999999997655 44 789999999999999999999999999999998876543 345789999999
Q ss_pred cccccchhhccCCc-EEeecCCceEEEcCCCCCCCCCCCCeEEecC
Q psy2470 814 GFFSNAAYLHYSGV-YRTVRGNEDLYIHPSSVLYTLQQPQCTHLEG 858 (858)
Q Consensus 814 G~~~nvA~~~~~~~-Y~t~~~~~~v~iHPsS~L~~~~~P~wvvy~~ 858 (858)
|||+|||++.++|+ |.++.+++.|+|||+|+|. +.|+||||+.
T Consensus 655 g~~~~~a~~~~~~~~y~~~~~~~~~~ihp~s~l~--~~~~~~v~~e 698 (773)
T 2xau_A 655 GFFMQVAKKRSGAKGYITVKDNQDVLIHPSTVLG--HDAEWVIYNE 698 (773)
T ss_dssp HHTTSEEEECCC--CEEETTTCCEEEECTTCCCC--TTCSEEEEEE
T ss_pred hChHhheeeccCCCcceEeeCCCEEEECCCcccC--CCCCEEEEEE
Confidence 99999999988876 9999999999999999995 3589999973
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-42 Score=421.70 Aligned_cols=516 Identities=13% Similarity=0.104 Sum_probs=328.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+.... .. ...+++++|+|+||.|+++++. .++|.+++.. +|+
T Consensus 51 v~apTGsGKT-----~~~~l~il~~~~------~~-----~~~il~i~P~r~La~q~~~~~~~~~~~g~~v~~~---~G~ 111 (715)
T 2va8_A 51 LTSPTGSGKT-----LIAEMGIISFLL------KN-----GGKAIYVTPLRALTNEKYLTFKDWELIGFKVAMT---SGD 111 (715)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHH------HS-----CSEEEEECSCHHHHHHHHHHHGGGGGGTCCEEEC---CSC
T ss_pred EEcCCCCcHH-----HHHHHHHHHHHH------HC-----CCeEEEEeCcHHHHHHHHHHHHHhhcCCCEEEEE---eCC
Confidence 5799999999 333333222111 01 1257999999999999999882 3456777666 676
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
..+.+... ..++|+|+|||+|.+ +..++. ++++++| ..+. .+.....++.+...+ ++.|+|+|
T Consensus 112 ~~~~~~~~-~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~----~~~~~~~l~~i~~~~-----~~~~ii~l 181 (715)
T 2va8_A 112 YDTDDAWL-KNYDIIITTYEKLDSLWRHRPEWLNEVNYFVLDELHYLN----DPERGPVVESVTIRA-----KRRNLLAL 181 (715)
T ss_dssp SSSCCGGG-GGCSEEEECHHHHHHHHHHCCGGGGGEEEEEECSGGGGG----CTTTHHHHHHHHHHH-----HTSEEEEE
T ss_pred CCCchhhc-CCCCEEEEcHHHHHHHHhCChhHhhccCEEEEechhhcC----CcccchHHHHHHHhc-----ccCcEEEE
Confidence 65555433 368999999999999 555554 7788777 3333 222233444444222 27899999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCC--------------ccch--HHHHHHHHHHHHhhCCCC
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDP--------------VVNY--VQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~--------------~~~~--~~~~~~~l~~i~~~~~~g 419 (858)
|||+ +.+.+++|++ ++.+..+++.+|++..+.... .... ...+...+.+.+. +.+
T Consensus 182 SATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 253 (715)
T 2va8_A 182 SATISNYKQIAKWLG------AEPVATNWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNG 253 (715)
T ss_dssp ESCCTTHHHHHHHHT------CEEEECCCCSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTC
T ss_pred cCCCCCHHHHHHHhC------CCccCCCCCCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCC
Confidence 9999 6999999997 566777777777765432111 0000 1344555555554 468
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccC---CC--------------------------CcceEEEeccCCCCHHHHHHhcCC
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQ---RE--------------------------DLKLLILPMHGSLPNNEQIKVFRP 470 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~---~~--------------------------~~~~~v~~LHg~l~q~~r~~v~~~ 470 (858)
++|||++|+++++.+++.|.+.... .. ..+..+.++||+|++++|..+++.
T Consensus 254 ~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~ 333 (715)
T 2va8_A 254 QVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEG 333 (715)
T ss_dssp CEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHH
Confidence 9999999999999999999854210 00 001248889999999999999999
Q ss_pred CCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh-
Q psy2470 471 TPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN- 546 (858)
Q Consensus 471 f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~- 546 (858)
|++|.++||||||++|+|||||++++|||+ ...||++.+.. ..|+|.++|.||+|||||.| +|.||+++
T Consensus 334 f~~g~~~vlvaT~~l~~Gidip~~~~VI~~----~~~~d~~~~~~---~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~ 406 (715)
T 2va8_A 334 FRQRKIKVIVATPTLAAGVNLPARTVIIGD----IYRFNKKIAGY---YDEIPIMEYKQMSGRAGRPGFDQIGESIVVVR 406 (715)
T ss_dssp HHTTCSCEEEECGGGGGSSCCCBSEEEECC----C-----------------CHHHHHHHHTTBCCTTTCSCEEEEEECS
T ss_pred HHcCCCeEEEEChHHhcccCCCceEEEEeC----CeeccccCCCC---CCcCCHHHHHHHhhhcCCCCCCCCceEEEEeC
Confidence 999999999999999999999999999996 34588766543 57999999999999999999 79999999
Q ss_pred -hh-HhhhhhhhhccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhH---hHhhhCCCCCcccccC---CchHHH
Q psy2470 547 -FM-YNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCY---DTKLIGITEPRRISVT---SLANRV 618 (858)
Q Consensus 547 -~~-~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l---~~~~~~~~~~~~~~~l---~~a~~~ 618 (858)
.+ +..+.++++ .++||+++++|.....++..+..+...+.+. ....+ .+ ..+.+. ...+..
T Consensus 407 ~~~~~~~~~~~~l--------~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~-l~--~~~~~~~~~~~~~~~ 475 (715)
T 2va8_A 407 DKEDVDRVFKKYV--------LSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENF-AY--ESLLAKQLVDVYFDR 475 (715)
T ss_dssp CGGGHHHHHHHTT--------SSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHH-HT--TSSSCHHHHHHHHHH
T ss_pred CchHHHHHHHHHH--------cCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHH-HH--hhHHHhhcchHHHHH
Confidence 22 334444222 2349999999986556665554444332110 00001 00 001111 125889
Q ss_pred HHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhc
Q psy2470 619 SEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKE 698 (858)
Q Consensus 619 a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~ 698 (858)
|++.|..+|++ + .++....+| ++|+.++.+|+||.++++ ++. +
T Consensus 476 al~~L~~~g~i-----~-~~~~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~ 518 (715)
T 2va8_A 476 AIRWLLEHSFI-----K-EEGNTFALT-----NFGKRVADLYINPFTADI------------------------IRK--G 518 (715)
T ss_dssp HHHHHHHTTSE-----E-ECSSEEEEC-----HHHHHHHHHTCCHHHHHH------------------------HHH--H
T ss_pred HHHHHHHCcCE-----e-ecCCeEeeC-----hHHHHHHHHcCCHhHHHH------------------------HHH--H
Confidence 99999999999 5 222222356 999999999999999998 544 3
Q ss_pred ccc---CCchhhHHHHhhcc-cCccccCCCChhhHHHHHHHHh----c-ccc-C-CC-------chhhHHHHHHHHHHcc
Q psy2470 699 RDF---ECSDEIASILSLLQ-VQDIFIKPSSGALSLKARVLRR----N-FEV-E-QG-------DLLTLLNIFKFYEKQE 760 (858)
Q Consensus 699 ~~~---~c~~~~~~i~a~l~-~~~~f~~~~~~~~~~~~~~~~~----~-f~~-~-~g-------DhltlLnif~~w~~~~ 760 (858)
... .|..+++.++|+.+ .+++|+++.+.. ....... . +.. + .. .|+-..-+.++|.+..
T Consensus 519 ~~~~~~~~~~~~l~~i~~~~e~~~~~~r~~e~~---~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~ll~~~~~~~ 595 (715)
T 2va8_A 519 LEGHKASCELAYLHLLAFTPDGPLVSVGRNEEE---ELIELLEDLDCELLIEEPYEEDEYSLYINALKVALIMKDWMDEV 595 (715)
T ss_dssp HHHSCCCCHHHHHHHHHHSTTSCCCCCCHHHHH---HHHHHHTTCSSCCSSCCCSSHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhccCCCHHHHHHHhhcCcccccCccChHHHH---HHHHHHHhcchhhcccccccccchhhhHHHHHHHHHHHHHHcCC
Confidence 232 78889999887766 577887664332 1111100 0 100 0 00 2444455667788777
Q ss_pred chHHHHHhccCCHHHHHHHHHH----HHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 761 NKKQFCHKYFFNYKVLKRAAEL----KNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 761 ~~~~wC~~~~Ln~~~L~~a~~i----r~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
.-..+|++..+....|....+. -..+.+++..+|.... ......+.+.|..|..+.
T Consensus 596 ~~~~i~~~y~~~~gdl~~l~~~a~~l~~a~~~i~~~~~~~~~--~~~l~~l~~rl~~gv~~e 655 (715)
T 2va8_A 596 DEDTILSKYNIGSGDLRNMVETMDWLTYSAYHLSRELKLNEH--ADKLRILNLRVRDGIKEE 655 (715)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHH--HHHHHHHHHHHHHTCCGG
T ss_pred CHHHHHHHHCCChhhHHHHHHHHHHHHHHHHHHHHHhCcHHH--HHHHHHHHHHHHcCCChh
Confidence 6678999998876665555544 4444445555543200 011223455666666544
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=409.15 Aligned_cols=517 Identities=13% Similarity=0.068 Sum_probs=337.2
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeee
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRG 282 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG 282 (858)
-+.|+|||||| .++.+|.+.. +.. ...+++++|+|+||.|+++++. .++|.+++.. +|
T Consensus 44 lv~apTGsGKT-----~~~~l~il~~----~~~--------~~~~l~i~P~r~La~q~~~~~~~~~~~g~~v~~~---~G 103 (702)
T 2p6r_A 44 LLAMPTAAGKT-----LLAEMAMVRE----AIK--------GGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS---TG 103 (702)
T ss_dssp EEECSSHHHHH-----HHHHHHHHHH----HHT--------TCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE---CS
T ss_pred EEEcCCccHHH-----HHHHHHHHHH----HHh--------CCcEEEEeCcHHHHHHHHHHHHHHHhcCCEEEEE---eC
Confidence 35799999999 3333332221 100 1257999999999999999883 2345666666 66
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
+..+.+... ..++|+|+|||++.+ +..++. ++++++| ..+..+.-...+..++..+. ..+++.|+|+
T Consensus 104 ~~~~~~~~~-~~~~Iiv~Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~-----~~~~~~~ii~ 177 (702)
T 2p6r_A 104 DYESRDEHL-GDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDSEKRGATLEILVTKMR-----RMNKALRVIG 177 (702)
T ss_dssp SCBCCSSCS-TTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCTTTHHHHHHHHHHHH-----HHCTTCEEEE
T ss_pred CCCcchhhc-cCCCEEEECHHHHHHHHHcChhHHhhcCEEEEeeeeecCCCCcccHHHHHHHHHH-----hcCcCceEEE
Confidence 655554433 368999999999998 555544 7777776 22220000111122222222 2356899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHH---------HHHHHHHHHHhhCCCCCEEEEc
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQ---------GVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~---------~~~~~l~~i~~~~~~g~iLVFl 425 (858)
||||+ +.+.+++|++ ++++..+++..|++..+.......+.+ .....+.+.+. +.+++|||+
T Consensus 178 lSATl~n~~~~~~~l~------~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~ 249 (702)
T 2p6r_A 178 LSATAPNVTEIAEWLD------ADYYVSDWRPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFE 249 (702)
T ss_dssp EECCCTTHHHHHHHTT------CEEEECCCCSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEEC
T ss_pred ECCCcCCHHHHHHHhC------CCcccCCCCCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEc
Confidence 99999 5999999987 577778888888877654322111110 03444555543 468999999
Q ss_pred CCHHHHHHHHHHHHHhccC--CC---------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 426 IGLEQIEHIIGILKQYHNQ--RE---------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~--~~---------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
+|+++++.+++.|.+.... .. ..+..+.++||+|++++|..+++.|++|.++|||||
T Consensus 250 ~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 329 (702)
T 2p6r_A 250 STRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVAT 329 (702)
T ss_dssp SSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTSCCEEEEC
T ss_pred CCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999999999853110 00 001347789999999999999999999999999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhhhh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIHFC 557 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~~~ 557 (858)
+++|+|||+|++++||++ ...|| |. ..|.|.++|.||+|||||.| +|.||.++ .+++.+.+++
T Consensus 330 ~~l~~Gidip~~~~VI~~----~~~yd---~~----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~- 397 (702)
T 2p6r_A 330 PTLAAGVNLPARRVIVRS----LYRFD---GY----SKRIKVSEYKQMAGRAGRPGMDERGEAIIIVGKRDREIAVKRY- 397 (702)
T ss_dssp STTTSSSCCCBSEEEECC----SEEES---SS----EEECCHHHHHHHHTTBSCTTTCSCEEEEEECCGGGHHHHHHTT-
T ss_pred cHHhccCCCCceEEEEcC----ceeeC---CC----CCcCCHHHHHHHhhhcCCCCCCCCceEEEEecCccHHHHHHHH-
Confidence 999999999999999995 35587 22 48999999999999999999 69999999 4444444422
Q ss_pred ccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHhH---hHhhh-CCCCC-ccc-ccCCchHHHHHHHHHhcCCeee
Q psy2470 558 VSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWCY---DTKLI-GITEP-RRI-SVTSLANRVSEELRTTLGHTVG 631 (858)
Q Consensus 558 ~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~l---~~~~~-~~~~~-~~~-~~l~~a~~~a~~~L~~lg~lv~ 631 (858)
..++||+++++|.....++..+..+...+.+. ....+ ..+-+ ++. ......+..+++.|..+|++
T Consensus 398 -------l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~~al~~L~~~g~i-- 468 (702)
T 2p6r_A 398 -------IFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELERVVRQLENWGMV-- 468 (702)
T ss_dssp -------TSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHHHHHHHHHHTTSE--
T ss_pred -------hcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHHHCcCe--
Confidence 23449999999986556665444433322110 00000 00000 000 12233788999999999999
Q ss_pred eeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhcccc--CCchhhHH
Q psy2470 632 YTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERDF--ECSDEIAS 709 (858)
Q Consensus 632 y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~~--~c~~~~~~ 709 (858)
+ .+ ....+| ++|+.++.+|+||.++++ ++. +... .|...++.
T Consensus 469 ---~-~~-~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~~~~~~~~~~~~l~ 512 (702)
T 2p6r_A 469 ---V-EA-AHLAPT-----KLGSLVSRLYIDPLTGFI------------------------FHD--VLSRMELSDIGALH 512 (702)
T ss_dssp ---E-ES-SSEEEC-----HHHHHHHHTTCCHHHHHH------------------------HHH--HTTTCCCCHHHHHH
T ss_pred ---e-EC-CeeccC-----hHHHHHHHHhCCHHHHHH------------------------HHH--HhhcccCCHHHHHH
Confidence 5 22 112357 999999999999999998 666 4444 78888999
Q ss_pred HHhhccc-CccccCCCChhhHHHHHHHHhcc-ccC--CC-------chhhHHHHHHHHHHccchHHHHHhccCCHHH---
Q psy2470 710 ILSLLQV-QDIFIKPSSGALSLKARVLRRNF-EVE--QG-------DLLTLLNIFKFYEKQENKKQFCHKYFFNYKV--- 775 (858)
Q Consensus 710 i~a~l~~-~~~f~~~~~~~~~~~~~~~~~~f-~~~--~g-------DhltlLnif~~w~~~~~~~~wC~~~~Ln~~~--- 775 (858)
++|+.+. +++++++.+.............+ ..+ .. .|+-..-+.++|.+...-...|.++++...-
T Consensus 513 ~i~~~~e~~~i~~r~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~lL~~~~~~~~l~~i~~~~~~~~gdl~~ 592 (702)
T 2p6r_A 513 LICRTPDMERLTVRKTDSWVEEEAFRLRKELSYYPSDFSVEYDWFLSEVKTALCLKDWIEEKDEDEICAKYGIAPGDLRR 592 (702)
T ss_dssp HHHHSTTSCCCCCCTTTHHHHHHHHHHGGGSSCCCCTTSTTHHHHHHHHHHHHHHHHHHTTCCHHHHHHHTTCCHHHHHH
T ss_pred HhhCCcccccCCCCCchHHHHHHHHhccccccCCcchhhhhhhhhhhhHHHHHHHHHHHcCCChHHHHHHhCCcHHhHHH
Confidence 8887764 67888876622111111111122 111 11 3555556778888766667788888875544
Q ss_pred -HHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 776 -LKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 776 -L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
+..|..+-.-+.+++...|.. ....+.+.+..|.+..
T Consensus 593 i~~~a~~l~~a~~~i~~~~g~~------~l~~l~~ri~~gv~~~ 630 (702)
T 2p6r_A 593 IVETAEWLSNAMNRIAEEVGNT------SVSGLTERIKHGVKEE 630 (702)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCC------SSTTHHHHHHHTCCGG
T ss_pred HHHHHHHHHHHHHHHHHHcCHH------HHHHHHHHHHcCCCcc
Confidence 444555555566666666654 2223455566665543
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=393.02 Aligned_cols=519 Identities=12% Similarity=0.040 Sum_probs=321.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH--HHhCCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL--TEMGCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~--~e~g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+..... . ...+++++|+|+||.|+++++. .++|.+++.. +|
T Consensus 44 v~apTGsGKT-----~~~~l~il~~~~~------~-----~~~~l~i~P~raLa~q~~~~~~~l~~~g~~v~~~---~G- 103 (720)
T 2zj8_A 44 ISIPTASGKT-----LIAEIAMVHRILT------Q-----GGKAVYIVPLKALAEEKFQEFQDWEKIGLRVAMA---TG- 103 (720)
T ss_dssp EECCGGGCHH-----HHHHHHHHHHHHH------H-----CSEEEEECSSGGGHHHHHHHTGGGGGGTCCEEEE---CS-
T ss_pred EEcCCccHHH-----HHHHHHHHHHHHh------C-----CCEEEEEcCcHHHHHHHHHHHHHHHhcCCEEEEe---cC-
Confidence 5799999999 4444443321110 0 1257999999999999999985 2345555555 33
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCccC-CCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEPI-SQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~~-L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
...........++|+|+|||++.. +..++. ++++++| ..+.. .+.-.. +..+...+ +++.|+|+|
T Consensus 104 ~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~---~~r~~~-~~~ll~~l----~~~~~ii~l 175 (720)
T 2zj8_A 104 DYDSKDEWLGKYDIIIATAEKFDSLLRHGSSWIKDVKILVADEIHLIGS---RDRGAT-LEVILAHM----LGKAQIIGL 175 (720)
T ss_dssp CSSCCCGGGGGCSEEEECHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC---TTTHHH-HHHHHHHH----BTTBEEEEE
T ss_pred CCCccccccCCCCEEEECHHHHHHHHHcChhhhhcCCEEEEECCcccCC---CcccHH-HHHHHHHh----hcCCeEEEE
Confidence 223333333578999999999988 544443 6777766 33220 222222 22222222 237999999
Q ss_pred eccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccch-------HHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 357 SATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNY-------VQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 357 SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~-------~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
|||+ +.+.+++|++ ++.+..+.+..|++..+.......+ ...+...+.+.+. +.+++|||++|+
T Consensus 176 SATl~n~~~~~~~l~------~~~~~~~~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr 247 (720)
T 2zj8_A 176 SATIGNPEELAEWLN------AELIVSDWRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIR--KKKGALIFVNMR 247 (720)
T ss_dssp ECCCSCHHHHHHHTT------EEEEECCCCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHH--TTCCEEEECSCH
T ss_pred cCCcCCHHHHHHHhC------CcccCCCCCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHh--CCCCEEEEecCH
Confidence 9999 8899999987 4556666666666654322111000 1123344444443 368999999999
Q ss_pred HHHHHHHHHHHHhccC-CC-------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec
Q psy2470 429 EQIEHIIGILKQYHNQ-RE-------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT 482 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~-~~-------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT 482 (858)
++++.+++.|.+.... .. .-...+.++||+|++++|..+++.|++|.++|||||
T Consensus 248 ~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~~~vlvaT 327 (720)
T 2zj8_A 248 RKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGIIKAVVAT 327 (720)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTSSCEEEEC
T ss_pred HHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCCCeEEEEC
Confidence 9999999999853110 00 001238899999999999999999999999999999
Q ss_pred CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh--hhHhhhhhhhh
Q psy2470 483 NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN--FMYNRLFIHFC 557 (858)
Q Consensus 483 dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~--~~~~~l~~~~~ 557 (858)
+++|+|||+|++++||+.+ ..|| ..| ..|.|.++|.||+|||||.| +|.||.++ .+++...++++
T Consensus 328 ~~l~~Gvdip~~~~VI~~~----~~yd-~~g-----~~~~s~~~~~Qr~GRaGR~g~~~~G~~~~l~~~~~~~~~~~~~~ 397 (720)
T 2zj8_A 328 PTLSAGINTPAFRVIIRDI----WRYS-DFG-----MERIPIIEVHQMLGRAGRPKYDEVGEGIIVSTSDDPREVMNHYI 397 (720)
T ss_dssp STTGGGCCCCBSEEEECCS----EECC-SSS-----CEECCHHHHHHHHTTBCCTTTCSEEEEEEECSSSCHHHHHHHHT
T ss_pred cHhhccCCCCceEEEEcCC----eeec-CCC-----CccCCHHHHHHHHhhcCCCCCCCCceEEEEecCccHHHHHHHHh
Confidence 9999999999999999954 4477 233 26999999999999999998 59999999 33333333222
Q ss_pred ccCCCCCCCCCCCccccCcccchhhhHHHHHHHhhhHh------HhH--hhhCCCCCcccccCCchHHHHHHHHHhcCCe
Q psy2470 558 VSRNIPTIPNDPKDVKCDVMFHKVFFSFFQYLLEAGWC------YDT--KLIGITEPRRISVTSLANRVSEELRTTLGHT 629 (858)
Q Consensus 558 ~~~~~p~~~~~Pei~r~~L~~~~~l~~~~~~l~~~~~~------l~~--~~~~~~~~~~~~~l~~a~~~a~~~L~~lg~l 629 (858)
. ++||.+++.+.....++..+......+.. ... ..+...+...-..+...+..+++.|...|++
T Consensus 398 ~--------~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~L~~~~~i 469 (720)
T 2zj8_A 398 F--------GKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEKIRNILYFLLENEFI 469 (720)
T ss_dssp T--------SCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHHHHHHHHHHHHTTSE
T ss_pred c--------CCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHHHHHHHHHHHHCCCe
Confidence 1 23777888887555666555444332211 000 0011001111111223678899999999998
Q ss_pred eeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHhhhccc----cCCch
Q psy2470 630 VGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKERD----FECSD 705 (858)
Q Consensus 630 v~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~~~~~~----~~c~~ 705 (858)
+.+++.....| ++|+.++.+|+||.++++ ++. +.. ..|..
T Consensus 470 -----~~~~~~~~~~t-----~lG~~~~~~~~~~~~~~~------------------------~~~--~~~~~~~~~~~~ 513 (720)
T 2zj8_A 470 -----EISLEDKIRPL-----SLGIRTAKLYIDPYTAKM------------------------FKD--KMEEVVKDPNPI 513 (720)
T ss_dssp -----EECTTSCEEEC-----HHHHHHHHHTCCHHHHHH------------------------HHH--HHHHHHHSCCHH
T ss_pred -----eECCCCcEeeC-----hHHHHHHHHcCCHHHHHH------------------------HHH--HHHhhccCCCHH
Confidence 41222222356 999999999999999998 443 222 37999
Q ss_pred hhHHHHhhccc-CccccCCCChhhHHHHHHH-Hh--cc----ccCCC----------chhhHHHHHHHHHHccchHHHHH
Q psy2470 706 EIASILSLLQV-QDIFIKPSSGALSLKARVL-RR--NF----EVEQG----------DLLTLLNIFKFYEKQENKKQFCH 767 (858)
Q Consensus 706 ~~~~i~a~l~~-~~~f~~~~~~~~~~~~~~~-~~--~f----~~~~g----------DhltlLnif~~w~~~~~~~~wC~ 767 (858)
+++.|+|+.+. +++|+++.+... -.+.. +. ++ .-..+ .|+-..-+.++|.+...-..-|.
T Consensus 514 ~~l~i~~~~~e~~~i~~r~~e~~~--l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~k~~llL~~~i~~~~l~~i~~ 591 (720)
T 2zj8_A 514 GIFHLISLTPDITPFNYSKREFER--LEEEYYEFKDRLYFDDPYISGYDPYLERKFFRAFKTALVLLAWINEVPEGEIVE 591 (720)
T ss_dssp HHHHHHHTSTTCCCCCCCHHHHHH--HHHHHHHHGGGCSSCCTTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhccCccccccccCHHHHHH--HHHHHHhccccccccccccccccchhhhhHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999885 778887644331 11111 10 01 00111 23334445567766554445566
Q ss_pred hccCCHH----HHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhccccc
Q psy2470 768 KYFFNYK----VLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSN 818 (858)
Q Consensus 768 ~~~Ln~~----~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~n 818 (858)
+..+... .+..|..+-..+.+++..+|... .......+.++|..|....
T Consensus 592 ~~~~~~gdl~~~~~~a~~l~~a~~~i~~~~g~~~--~~~~l~~l~~rl~~gv~~e 644 (720)
T 2zj8_A 592 KYSVEPGDIYRIVETAEWLVYSLKEIAKVLGAYE--IVDYLETLRVRVKYGIREE 644 (720)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHHHHHHHHTCGG--GHHHHHHHHHHHHHTCCGG
T ss_pred HhCCChHhHHHHHHHHHHHHHHHHHHHHHcCcHH--HHHHHHHHHHHHHcCCCcc
Confidence 6655443 34555555566666666666521 0111223556666666543
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.5e-39 Score=342.42 Aligned_cols=200 Identities=30% Similarity=0.509 Sum_probs=188.8
Q ss_pred hHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHH
Q psy2470 615 ANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKIL 694 (858)
Q Consensus 615 a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll 694 (858)
++..|++.|..+|++ + +++. +| ++|+.|++||+||+++++ ++
T Consensus 19 ~l~~A~~~L~~LgAl-----d-~~g~---lT-----~lG~~ma~lPl~P~lakm------------------------Ll 60 (270)
T 3i4u_A 19 TLITAMEQLYTLGAL-----D-DEGL---LT-----RLGRRMAEFPLEPMLCKM------------------------LI 60 (270)
T ss_dssp HHHHHHHHHHHHTSB-----C-TTSC---BC-----HHHHHHTTSCSCHHHHHH------------------------HH
T ss_pred HHHHHHHHHHHcCCc-----C-CCCC---cc-----HHHHHHHhCCCCHHHHHH------------------------HH
Confidence 889999999999999 6 5555 89 999999999999999999 88
Q ss_pred hhhccccCCchhhHHHHhhcccCccccCCCChhhHHHHHHHHhccccCCCchhhHHHHHHHHHHccchHHHHHhccCCHH
Q psy2470 695 KDKERDFECSDEIASILSLLQVQDIFIKPSSGALSLKARVLRRNFEVEQGDLLTLLNIFKFYEKQENKKQFCHKYFFNYK 774 (858)
Q Consensus 695 ~~~~~~~~c~~~~~~i~a~l~~~~~f~~~~~~~~~~~~~~~~~~f~~~~gDhltlLnif~~w~~~~~~~~wC~~~~Ln~~ 774 (858)
. +..++|.+++++|+|+|+++++|+.|.+++ ++++..|++|.+..|||+++||+|++|++.+.+++||++||||++
T Consensus 61 ~--a~~~~c~~~~l~iaA~Ls~~~~f~~p~~~~--~~a~~~~~~f~~~~sD~ltlLn~~~~~~~~~~~~~wC~~~fL~~~ 136 (270)
T 3i4u_A 61 M--SVHLGCSEEMLTIVSMLSVQNVFYRPKDKQ--ALADQKKAKFHQTEGDHLTLLAVYNSWKNNKFSNPWCYENFIQAR 136 (270)
T ss_dssp H--HHHTTCHHHHHHHHHHHTSSCCBCCCGGGH--HHHHHHHHTTCBTTBHHHHHHHHHHHHHHTTTCHHHHHHTTBCHH
T ss_pred H--hhhcCCHHHHHHHHHHHCCCccccCCchhH--HHHHHHHHHccCCCChHHHHHHHHHHHHHcCchhhHHHHhcCCHH
Confidence 8 888999999999999999999999998776 778889999999999999999999999998888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCChHHHHHHHHhcccccchhhccCCcEEeecCCceEEEcCCCCCCCCCCCCeE
Q psy2470 775 VLKRAAELKNQMILLLKKSSIPLVTSPRNTNAVLKCLTNGFFSNAAYLHYSGVYRTVRGNEDLYIHPSSVLYTLQQPQCT 854 (858)
Q Consensus 775 ~L~~a~~ir~QL~~~l~~~~~~~~~~~~~~~~i~k~l~aG~~~nvA~~~~~~~Y~t~~~~~~v~iHPsS~L~~~~~P~wv 854 (858)
+|++|.++|+||.+++++.+++.++++.+.+.|++|||+|||+|||++++++.|+++.+++.|+|||||+|++ ++|+||
T Consensus 137 ~l~~~~~ir~QL~~~l~~~~~~~~s~~~~~~~i~~~L~aG~~~nvA~~~~~~~Y~~~~~~~~v~iHPsS~L~~-~~p~wv 215 (270)
T 3i4u_A 137 SLRRAQDIRKQMLGIMDRHKLDVVSCGKSTVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFN-RQPEWV 215 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCTTCTHHHHHHHHHHHGGGEEEECSSSSEEETTTCCEEEECTTSTTTT-SCCSEE
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCCcchHHHHHHHHHHHhHHHHheeCCCCceEEccCCCEEEECchhhhcC-CCCCEE
Confidence 9999999999999999999998888888999999999999999999999888999999999999999999997 578999
Q ss_pred Eec
Q psy2470 855 HLE 857 (858)
Q Consensus 855 vy~ 857 (858)
||+
T Consensus 216 vy~ 218 (270)
T 3i4u_A 216 VYH 218 (270)
T ss_dssp EEE
T ss_pred EEE
Confidence 997
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-36 Score=343.27 Aligned_cols=314 Identities=15% Similarity=0.130 Sum_probs=216.0
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+.+ +-+.|+|||||| +||.+|.+..... ... .
T Consensus 74 ~g~~~pt~iQ~~ai~~i~~g~d--------------------~i~~a~TGsGKT-----~a~~lpil~~l~~---~~~-~ 124 (434)
T 2db3_A 74 SGYKIPTPIQKCSIPVISSGRD--------------------LMACAQTGSGKT-----AAFLLPILSKLLE---DPH-E 124 (434)
T ss_dssp TTCCSCCHHHHHHHHHHHTTCC--------------------EEEECCTTSSHH-----HHHHHHHHHHHHH---SCC-C
T ss_pred cCCCCCCHHHHHHHHHHhcCCC--------------------EEEECCCCCCch-----HHHHHHHHHHHHh---ccc-c
Confidence 3344566666666665554421 224699999999 6666665543221 111 0
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHh---CCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCC-ccCCCc
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEM---GCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQS 316 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~ 316 (858)
.......+||++|||+||.|+++++.+.. +.+++..+|+..... .......+++|+|+|||+|++ +.. ...+.+
T Consensus 125 ~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~~~~~gg~~~~~-~~~~l~~~~~Ivv~Tp~~l~~~l~~~~~~l~~ 203 (434)
T 2db3_A 125 LELGRPQVVIVSPTRELAIQIFNEARKFAFESYLKIGIVYGGTSFRH-QNECITRGCHVVIATPGRLLDFVDRTFITFED 203 (434)
T ss_dssp CCTTCCSEEEECSSHHHHHHHHHHHHHHTTTSSCCCCEECTTSCHHH-HHHHHTTCCSEEEECHHHHHHHHHTTSCCCTT
T ss_pred cccCCccEEEEecCHHHHHHHHHHHHHHhccCCcEEEEEECCCCHHH-HHHHhhcCCCEEEEChHHHHHHHHhCCccccc
Confidence 11233568999999999999988775432 333433322211100 011112457999999999999 332 334666
Q ss_pred ccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecC---e
Q psy2470 317 YLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKG---H 385 (858)
Q Consensus 317 ~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g---~ 385 (858)
+.++ ++++ .+|...+.+.+. .+ ..+++.|+++||||++ ++.++..+.. ++..+.+.. .
T Consensus 204 ~~~lVlDEah~~~~----~gf~~~~~~i~~-~~--~~~~~~q~l~~SAT~~~~~~~~~~~~l~----~~~~i~~~~~~~~ 272 (434)
T 2db3_A 204 TRFVVLDEADRMLD----MGFSEDMRRIMT-HV--TMRPEHQTLMFSATFPEEIQRMAGEFLK----NYVFVAIGIVGGA 272 (434)
T ss_dssp CCEEEEETHHHHTS----TTTHHHHHHHHH-CT--TSCSSCEEEEEESCCCHHHHHHHHTTCS----SCEEEEESSTTCC
T ss_pred CCeEEEccHhhhhc----cCcHHHHHHHHH-hc--CCCCCceEEEEeccCCHHHHHHHHHhcc----CCEEEEecccccc
Confidence 6655 8888 555544444433 11 2367899999999994 4556654442 344444432 2
Q ss_pred ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH
Q psy2470 386 LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465 (858)
Q Consensus 386 ~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~ 465 (858)
...+.+.+......+ +...+.+++.... +++|||++++++++.+++.|++. ++.+..+||++++++|.
T Consensus 273 ~~~i~~~~~~~~~~~----k~~~l~~~l~~~~-~~~lVF~~t~~~a~~l~~~L~~~-------~~~~~~lhg~~~~~~R~ 340 (434)
T 2db3_A 273 CSDVKQTIYEVNKYA----KRSKLIEILSEQA-DGTIVFVETKRGADFLASFLSEK-------EFPTTSIHGDRLQSQRE 340 (434)
T ss_dssp CTTEEEEEEECCGGG----HHHHHHHHHHHCC-TTEEEECSSHHHHHHHHHHHHHT-------TCCEEEESTTSCHHHHH
T ss_pred ccccceEEEEeCcHH----HHHHHHHHHHhCC-CCEEEEEeCcHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHH
Confidence 234555554433222 3344555555544 34999999999999999999977 88999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 466 ~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
++++.|++|+.+||||||+++||||||+|++||| || .|.+.++|+||+|||||.|. |.|+.
T Consensus 341 ~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~--------~d----------~p~~~~~y~qriGR~gR~g~~G~a~~ 402 (434)
T 2db3_A 341 QALRDFKNGSMKVLIATSVASRGLDIKNIKHVIN--------YD----------MPSKIDDYVHRIGRTGRVGNNGRATS 402 (434)
T ss_dssp HHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSSCTTCCEEEEE
T ss_pred HHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCCEEEE
Confidence 9999999999999999999999999999999999 76 67889999999999999987 99999
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
++
T Consensus 403 ~~ 404 (434)
T 2db3_A 403 FF 404 (434)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-33 Score=318.11 Aligned_cols=290 Identities=13% Similarity=0.120 Sum_probs=202.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. + .. +.....+|+++|||+||.|+++++.+......+.. +++..
T Consensus 69 v~apTGsGKT-----~~~~~~~~~~----~---~~--~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~---~~~~~ 131 (412)
T 3fht_A 69 AQSQSGTGKT-----AAFVLAMLSQ----V---EP--ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAV 131 (412)
T ss_dssp EECCTTSCHH-----HHHHHHHHHH----C---CT--TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC---EEEEC
T ss_pred EECCCCchHH-----HHHHHHHHHH----h---hh--cCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccce---EEEee
Confidence 4699999999 4444443321 1 11 12233689999999999999887755443323444 55544
Q ss_pred ecccee---ecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 286 RKGRMK---ILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 286 r~~~~~---~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
+..... ...++|+|+|||+|++ +.. ...+.++.+| ++++. .++...+..... ..+++.|+
T Consensus 132 ~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~---~~~~~~~~~~~~-----~~~~~~~~ 203 (412)
T 3fht_A 132 RGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIAT---QGHQDQSIRIQR-----MLPRNCQM 203 (412)
T ss_dssp TTCCCCTTCCCCCSEEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHST---TTTHHHHHHHHH-----TSCTTCEE
T ss_pred cCcchhhhhcCCCCEEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhc---CCcHHHHHHHHh-----hCCCCceE
Confidence 433322 2357999999999999 433 2344566665 45440 122222222222 55678999
Q ss_pred EEEecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 354 IISSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 354 il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++||||++. ..+...+.. ++..+.+.... ..+...+..... ...+...+..++.....+++|||++++
T Consensus 204 i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvf~~~~ 276 (412)
T 3fht_A 204 LLFSATFEDSVWKFAQKVVP----DPNVIKLKREEETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTR 276 (412)
T ss_dssp EEEESCCCHHHHHHHHHHSS----SCEEECCCGGGSSCTTEEEEEEECSS---HHHHHHHHHHHHHHHSSSEEEEECSSH
T ss_pred EEEEeecCHHHHHHHHHhcC----CCeEEeeccccccccCceEEEEEcCC---hHHHHHHHHHHHhhcCCCCEEEEeCCH
Confidence 999999954 345544442 44444443322 234444443322 234555566666666678999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||++++|..+.+
T Consensus 277 ~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~ 349 (412)
T 3fht_A 277 KTASWLAAELSKE-------GHQVALLSGEMMVEQRAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG 349 (412)
T ss_dssp HHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSS
T ss_pred HHHHHHHHHHHhC-------CCeEEEecCCCCHHHHHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCC
Confidence 9999999999987 788999999999999999999999999999999999999999999999999665444332
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|.++|.||+|||||.|. |.|+.++
T Consensus 350 ------------~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 376 (412)
T 3fht_A 350 ------------NPDNETYLHRIGRTGRFGKRGLAVNMV 376 (412)
T ss_dssp ------------SBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred ------------CcchheeecccCcccCCCCCceEEEEE
Confidence 2678999999999999987 9999999
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-34 Score=335.44 Aligned_cols=315 Identities=12% Similarity=0.117 Sum_probs=101.0
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
.....|..+|...+...+.+...+ +-+.|+|||||| .+|.+|.+.. + ..
T Consensus 110 ~g~~~p~~~Q~~ai~~il~~~~~~------------------~l~~a~TGsGKT-----~~~~l~il~~----l---~~- 158 (479)
T 3fmp_B 110 MGFNRPSKIQENALPLMLAEPPQN------------------LIAQSQSGTGKT-----AAFVLAMLSQ----V---EP- 158 (479)
T ss_dssp TTCCSCCHHHHHHHHHHTSBSCCE------------------EEEECCSSSSHH-----HHHHHHHHTT----C---CT-
T ss_pred cCCCCCCHHHHHHHHHHHcCCCCc------------------EEEEcCCCCchh-----HHHHHHHHHH----H---hh-
Confidence 334456666666665555542222 224699999999 4444443321 1 11
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce---eecceeEEEeecCcccc-CCCcc--CCC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM---KILVSKIFKMSQGKPSD-SGVEP--ISQ 315 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~---~~~~t~I~v~TpGrLl~-~~~~~--~L~ 315 (858)
+....++||++|||+||.|+++++.+......+.. +++.++.... .....+|+|+|||+|++ +.+.. .+.
T Consensus 159 -~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~ 234 (479)
T 3fmp_B 159 -ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPK 234 (479)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCC---EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTSCCCCGG
T ss_pred -cCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCce---EEEEeCCccccccccCCCCEEEECchHHHHHHHhcCCcCcc
Confidence 12234689999999999999887765544333333 4444443322 22346899999999999 44422 345
Q ss_pred cccEE------EecCCCCCc-hhhhhHHHHHHHHhcccCCCCceEEEEecccCH--HHHHHHhhcccCCCCcEEEecCee
Q psy2470 316 SYLVE------LSILAPGGQ-DVIGEDMKAFAEQLKPLKRTQLKLIISSATVDA--EEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 316 ~~~vl------R~l~~~~~~-d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
++.+| ++++ . .+........ ...+++.|+++||||++. ..++..+.. ++..+.+....
T Consensus 235 ~~~~iViDEah~~~~----~~~~~~~~~~i~-----~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~i~~~~~~ 301 (479)
T 3fmp_B 235 KIKVFVLDEADVMIA----TQGHQDQSIRIQ-----RMLPRNCQMLLFSATFEDSVWKFAQKVVP----DPNVIKLKREE 301 (479)
T ss_dssp GCCEEEECCHHHHHT----STTHHHHHHHHH-----TTSCTTSEEEEEESCCCHHHHHHHHHHSS----SEEEEEEC---
T ss_pred cCCEEEEECHHHHhh----cCCcHHHHHHHH-----hhCCccceEEEEeCCCCHHHHHHHHHHcC----CCeEEeccccc
Confidence 66655 5554 2 2222222222 255678999999999954 455555442 44455554332
Q ss_pred c---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHH
Q psy2470 387 Y---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNE 463 (858)
Q Consensus 387 ~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~ 463 (858)
. .+.+.+..... ...+...+..++.....+++||||++++.++.+++.|... ++.+..+||++++.+
T Consensus 302 ~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~-------~~~v~~lh~~~~~~~ 371 (479)
T 3fmp_B 302 ETLDTIKQYYVLCSS---RDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKE-------GHQVALLSGEMMVEQ 371 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCcCCceEEEEEeCC---HHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhC-------CccEEEecCCCCHHH
Confidence 2 22223322221 1234445555555556789999999999999999999876 888999999999999
Q ss_pred HHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceE
Q psy2470 464 QIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHV 542 (858)
Q Consensus 464 r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~ 542 (858)
|.++++.|++|+.+|||||+++++|||+|+|++|||+++|....+ +.+..+|.||+|||||.|. |.|
T Consensus 372 R~~~~~~f~~g~~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~------------~~s~~~~~Qr~GRagR~g~~G~~ 439 (479)
T 3fmp_B 372 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDG------------NPDNETYLHRIGRTGRFGKRGLA 439 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCCcEEEEccccccCCccccCCEEEEecCCCCCcc------------CCCHHHHHHHhcccccCCCCceE
Confidence 999999999999999999999999999999999999554432221 2567899999999999987 999
Q ss_pred EEeh
Q psy2470 543 YRKN 546 (858)
Q Consensus 543 ~rL~ 546 (858)
+.++
T Consensus 440 i~~~ 443 (479)
T 3fmp_B 440 VNMV 443 (479)
T ss_dssp ----
T ss_pred EEEE
Confidence 9999
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=320.85 Aligned_cols=282 Identities=12% Similarity=0.201 Sum_probs=199.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +.. .....++||++|||+||.|+++++.+ ++...+.. ++...
T Consensus 79 v~a~TGsGKT-----~~~~~~~~~~----l~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 140 (410)
T 2j0s_A 79 AQSQSGTGKT-----ATFSISVLQC----LDI-----QVRETQALILAPTRELAVQIQKGLLA-LGDYMNVQ---CHACI 140 (410)
T ss_dssp EECCTTSSHH-----HHHHHHHHHT----CCT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCC---EEEEC
T ss_pred EECCCCCCch-----HHHHHHHHHH----Hhh-----ccCCceEEEEcCcHHHHHHHHHHHHH-HhccCCeE---EEEEE
Confidence 4699999999 4444443321 110 11234689999999999999888754 45444544 44333
Q ss_pred ecccee------ecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRMK------ILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~~------~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
++.... ..+++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++.
T Consensus 141 g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~----~~~~~~~~~i~~-----~~~~~~ 211 (410)
T 2j0s_A 141 GGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLN----KGFKEQIYDVYR-----YLPPAT 211 (410)
T ss_dssp TTSCHHHHHHHHHHCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHT-----TSCTTC
T ss_pred CCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHhCCccHhheeEEEEccHHHHHh----hhhHHHHHHHHH-----hCccCc
Confidence 332211 1357999999999998 333 3345556655 6777 554443333332 556789
Q ss_pred eEEEEecccCHH--HHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 352 KLIISSATVDAE--EICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 352 q~il~SAT~~~~--~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
|+++||||+..+ .+...+.. ++..+.+.... ..+..++......+ .+...+..++.....+++|||++
T Consensus 212 ~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~k~~~l~~~~~~~~~~~~lVf~~ 284 (410)
T 2j0s_A 212 QVVLISATLPHEILEMTNKFMT----DPIRILVKRDELTLEGIKQFFVAVEREE---WKFDTLCDLYDTLTITQAVIFCN 284 (410)
T ss_dssp EEEEEESCCCHHHHTTGGGTCS----SCEEECCCGGGCSCTTEEEEEEEESSTT---HHHHHHHHHHHHHTSSEEEEECS
T ss_pred eEEEEEcCCCHHHHHHHHHHcC----CCEEEEecCccccCCCceEEEEEeCcHH---hHHHHHHHHHHhcCCCcEEEEEc
Confidence 999999999543 22222221 33334333221 23445544433222 23445555555555679999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 285 ~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~------- 350 (410)
T 2j0s_A 285 TKRKVDWLTEKMREA-------NFTVSSMHGDMPQKERESIMKEFRSGASRVLISTDVWARGLDVPQVSLIIN------- 350 (410)
T ss_dssp SHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE-------
T ss_pred CHHHHHHHHHHHHhC-------CCceEEeeCCCCHHHHHHHHHHHHCCCCCEEEECChhhCcCCcccCCEEEE-------
Confidence 999999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|| .|.+.++|.||+|||||.|. |.|+.++
T Consensus 351 -~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (410)
T 2j0s_A 351 -YD----------LPNNRELYIHRIGRSGRYGRKGVAINFV 380 (410)
T ss_dssp -SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred -EC----------CCCCHHHHHHhcccccCCCCceEEEEEe
Confidence 66 57889999999999999986 9999999
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-34 Score=323.78 Aligned_cols=282 Identities=15% Similarity=0.200 Sum_probs=187.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +.. .....++||++|||+|+.|+++++.+ ++...+.. ++...
T Consensus 82 v~a~TGsGKT-----~~~~~~~~~~----~~~-----~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 143 (414)
T 3eiq_A 82 AQAQSGTGKT-----ATFAISILQQ----IEL-----DLKATQALVLAPTRELAQQIQKVVMA-LGDYMGAS---CHACI 143 (414)
T ss_dssp ECCCSCSSSH-----HHHHHHHHHH----CCT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HGGGSCCC---EEECC
T ss_pred EECCCCCccc-----HHHHHHHHHH----Hhh-----cCCceeEEEEeChHHHHHHHHHHHHH-HhcccCce---EEEEE
Confidence 4699999999 4444432221 111 01223589999999999999887754 33334444 33333
Q ss_pred ecccee-------ecceeEEEeecCcccc-CCCc-cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK-------ILVSKIFKMSQGKPSD-SGVE-PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~-------~~~t~I~v~TpGrLl~-~~~~-~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ...++|+|+|||+|++ +..+ ..+..+.+| ++++ .++...+.+.+. ..+++
T Consensus 144 ~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~----~~~~~~~~~~~~-----~~~~~ 214 (414)
T 3eiq_A 144 GGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLS----RGFKDQIYDIFQ-----KLNSN 214 (414)
T ss_dssp CCTTHHHHHHHHTTTCCSEEEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHH----TTTHHHHHHHHT-----TSCTT
T ss_pred CCcchHHHHHHHhcCCCCEEEECHHHHHHHHHcCCcccccCcEEEEECHHHhhc----cCcHHHHHHHHH-----hCCCC
Confidence 322221 1457999999999999 4332 345555555 5666 444444444433 56778
Q ss_pred ceEEEEecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEc
Q psy2470 351 LKLIISSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFV 425 (858)
Q Consensus 351 ~q~il~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl 425 (858)
.|+++||||++. ..+...+.. ++..+.+.... ..+...+......+ .+...+..++.....+++|||+
T Consensus 215 ~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lvf~ 287 (414)
T 3eiq_A 215 TQVVLLSATMPSDVLEVTKKFMR----DPIRILVKKEELTLEGIRQFYINVEREE---WKLDTLCDLYETLTITQAVIFI 287 (414)
T ss_dssp CEEEEECSCCCHHHHHHHTTTCS----SCEEECCCCCCCCTTSCCEEEEECSSST---THHHHHHHHHHSSCCSSCEEEC
T ss_pred CeEEEEEEecCHHHHHHHHHHcC----CCEEEEecCCccCCCCceEEEEEeChHH---hHHHHHHHHHHhCCCCcEEEEe
Confidence 999999999954 333333331 34444443322 23344444433222 2455667777777788999999
Q ss_pred CCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccc
Q psy2470 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKA 505 (858)
Q Consensus 426 ~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~ 505 (858)
+++++++.+++.|.+. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 288 ~~~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~------ 354 (414)
T 3eiq_A 288 NTRRKVDWLTEKMHAR-------DFTVSAMHGDMDQKERDVIMREFRSGSSRVLITTDLLARGIDVQQVSLVIN------ 354 (414)
T ss_dssp SCHHHHHHHHHHHHTT-------TCCCEEC---CHHHHHHHHHHHHSCC---CEEECSSCC--CCGGGCSCEEE------
T ss_pred CCHHHHHHHHHHHHhc-------CCeEEEecCCCCHHHHHHHHHHHHcCCCcEEEECCccccCCCccCCCEEEE------
Confidence 9999999999999876 788999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 506 RWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 506 ~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.+..+|.||+|||||.|. |.||.++
T Consensus 355 --~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 384 (414)
T 3eiq_A 355 --YD----------LPTNRENYIHRIGRGGRFGRKGVAINMV 384 (414)
T ss_dssp --SS----------CCSSTHHHHHHSCCC-------CEEEEE
T ss_pred --eC----------CCCCHHHhhhhcCcccCCCCCceEEEEE
Confidence 66 57788999999999999986 9999999
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=5.6e-32 Score=303.68 Aligned_cols=289 Identities=17% Similarity=0.164 Sum_probs=199.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+ ++.+|.+.. +... .....+|+++||++|+.|+++++. +++...+.. ++...
T Consensus 49 v~a~TGsGKT~-----~~~~~~~~~----~~~~-----~~~~~~lil~P~~~L~~q~~~~~~-~~~~~~~~~---~~~~~ 110 (395)
T 3pey_A 49 AQSQSGTGKTA-----AFSLTMLTR----VNPE-----DASPQAICLAPSRELARQTLEVVQ-EMGKFTKIT---SQLIV 110 (395)
T ss_dssp EECCTTSCHHH-----HHHHHHHHH----CCTT-----CCSCCEEEECSSHHHHHHHHHHHH-HHTTTSCCC---EEEES
T ss_pred EECCCCCcHHH-----HHHHHHHHH----hccC-----CCCccEEEECCCHHHHHHHHHHHH-HHhcccCee---EEEEe
Confidence 46999999993 333332221 1111 123368999999999999998774 444444433 33222
Q ss_pred e--ccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 R--KGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r--~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
. ........++|+|+|||+|++ +.. ...+.++.+| ++.+ ..++...+.+... ..+++.|+++
T Consensus 111 ~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~---~~~~~~~~~~~~~-----~~~~~~~~i~ 182 (395)
T 3pey_A 111 PDSFEKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLD---QQGLGDQCIRVKR-----FLPKDTQLVL 182 (395)
T ss_dssp TTSSCTTSCBCCSEEEECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHH---STTHHHHHHHHHH-----TSCTTCEEEE
T ss_pred cCchhhhccCCCCEEEEcHHHHHHHHHcCCcccccCCEEEEEChhhhcC---ccccHHHHHHHHH-----hCCCCcEEEE
Confidence 2 222223468999999999998 433 3346666665 3333 0122222222222 5567899999
Q ss_pred EecccCH--HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHH
Q psy2470 356 SSATVDA--EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQ 430 (858)
Q Consensus 356 ~SAT~~~--~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~ 430 (858)
||||+.. ..+...+.. ++..+.+.... ..+...+.... ....+...+..+......+++|||++++++
T Consensus 183 ~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~ 255 (395)
T 3pey_A 183 FSATFADAVRQYAKKIVP----NANTLELQTNEVNVDAIKQLYMDCK---NEADKFDVLTELYGLMTIGSSIIFVATKKT 255 (395)
T ss_dssp EESCCCHHHHHHHHHHSC----SCEEECCCGGGCSCTTEEEEEEECS---SHHHHHHHHHHHHTTTTSSEEEEECSCHHH
T ss_pred EEecCCHHHHHHHHHhCC----CCeEEEccccccccccccEEEEEcC---chHHHHHHHHHHHHhccCCCEEEEeCCHHH
Confidence 9999943 455554442 34444433322 22334443322 223455566666666677899999999999
Q ss_pred HHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccC
Q psy2470 431 IEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNP 510 (858)
Q Consensus 431 i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~ 510 (858)
++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+++++..
T Consensus 256 ~~~l~~~l~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~----- 323 (395)
T 3pey_A 256 ANVLYGKLKSE-------GHEVSILHGDLQTQERDRLIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTL----- 323 (395)
T ss_dssp HHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBC-----
T ss_pred HHHHHHHHHhc-------CCcEEEeCCCCCHHHHHHHHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCC-----
Confidence 99999999977 788999999999999999999999999999999999999999999999999554321
Q ss_pred CCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 511 NTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 511 ~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...+.|.++|.||+|||||.|. |.|+.++
T Consensus 324 -------~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~ 353 (395)
T 3pey_A 324 -------ANGQADPATYIHRIGRTGRFGRKGVAISFV 353 (395)
T ss_dssp -------TTSSBCHHHHHHHHTTSSCTTCCEEEEEEE
T ss_pred -------CcCCCCHHHhhHhccccccCCCCceEEEEE
Confidence 1134699999999999999987 9999998
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=99.98 E-value=1.6e-32 Score=323.78 Aligned_cols=264 Identities=17% Similarity=0.095 Sum_probs=186.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+. . ..++||++|||++|.|++++++++++..++.. +|+..
T Consensus 237 v~ApTGSGKT-----~a~~l~ll~----------~-----g~~vLVl~PTReLA~Qia~~l~~~~g~~vg~~---vG~~~ 293 (666)
T 3o8b_A 237 LHAPTGSGKS-----TKVPAAYAA----------Q-----GYKVLVLNPSVAATLGFGAYMSKAHGIDPNIR---TGVRT 293 (666)
T ss_dssp EECCTTSCTT-----THHHHHHHH----------T-----TCCEEEEESCHHHHHHHHHHHHHHHSCCCEEE---CSSCE
T ss_pred EEeCCchhHH-----HHHHHHHHH----------C-----CCeEEEEcchHHHHHHHHHHHHHHhCCCeeEE---ECcEe
Confidence 4699999999 444443221 1 12589999999999999999999999888777 66533
Q ss_pred eccceeecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCce--EEEEec
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK--LIISSA 358 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q--~il~SA 358 (858)
...+++|+|+|||||+. .....++++++| ++++ .++...+.+.+. ..+...| +++|||
T Consensus 294 -----~~~~~~IlV~TPGrLl~-~~~l~l~~l~~lVlDEAH~l~----~~~~~~l~~Il~-----~l~~~~~~llil~SA 358 (666)
T 3o8b_A 294 -----ITTGAPVTYSTYGKFLA-DGGCSGGAYDIIICDECHSTD----STTILGIGTVLD-----QAETAGARLVVLATA 358 (666)
T ss_dssp -----ECCCCSEEEEEHHHHHH-TTSCCTTSCSEEEETTTTCCS----HHHHHHHHHHHH-----HTTTTTCSEEEEEES
T ss_pred -----ccCCCCEEEECcHHHHh-CCCcccCcccEEEEccchhcC----ccHHHHHHHHHH-----hhhhcCCceEEEECC
Confidence 34568999999999976 112345556655 8888 666544443333 3333344 778899
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|++.. +.. ..+.+..+.-...+ ...+.... .. ......+++|||++|+++++.+++.|
T Consensus 359 T~~~~-----i~~---~~p~i~~v~~~~~~-~i~~~~~~-~~------------l~~~~~~~vLVFv~Tr~~ae~la~~L 416 (666)
T 3o8b_A 359 TPPGS-----VTV---PHPNIEEVALSNTG-EIPFYGKA-IP------------IEAIRGGRHLIFCHSKKKCDELAAKL 416 (666)
T ss_dssp SCTTC-----CCC---CCTTEEEEECBSCS-SEEETTEE-EC------------GGGSSSSEEEEECSCHHHHHHHHHHH
T ss_pred CCCcc-----ccc---CCcceEEEeecccc-hhHHHHhh-hh------------hhhccCCcEEEEeCCHHHHHHHHHHH
Confidence 99532 110 01222222111000 01111000 00 11235789999999999999999999
Q ss_pred HHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee----ccCCCCC
Q psy2470 439 KQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW----FNPNTLT 514 (858)
Q Consensus 439 ~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~----yd~~~g~ 514 (858)
++. ++.+.++||+|+|++ |+++..+||||||+|||||||| |++|||+|+.+... |||+.++
T Consensus 417 ~~~-------g~~v~~lHG~l~q~e-------r~~~~~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl 481 (666)
T 3o8b_A 417 SGL-------GINAVAYYRGLDVSV-------IPTIGDVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTI 481 (666)
T ss_dssp HTT-------TCCEEEECTTSCGGG-------SCSSSCEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEE
T ss_pred HhC-------CCcEEEecCCCCHHH-------HHhCCCcEEEECChHHccCCCC-CcEEEecCccccccccccccccccc
Confidence 976 889999999999986 3446669999999999999997 99999999888665 6677777
Q ss_pred CcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 515 NSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 515 ~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
... ..|+|.++|+||+|||||.++|. |+||
T Consensus 482 ~~~-~~P~s~~syiQRiGRtGRg~~G~-i~lv 511 (666)
T 3o8b_A 482 ETT-TVPQDAVSRSQRRGRTGRGRRGI-YRFV 511 (666)
T ss_dssp EEE-EEECBHHHHHHHHTTBCSSSCEE-EEES
T ss_pred ccc-cCcCCHHHHHHHhccCCCCCCCE-EEEE
Confidence 554 58999999999999999955599 9998
|
| >2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=312.59 Aligned_cols=294 Identities=13% Similarity=0.058 Sum_probs=193.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccC---------CCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCcc
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIG---------QPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDF 276 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~---------~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~ 276 (858)
+.|+|||||| .++.+|.+........ ....+.......+||++|||+||.|+++++.+. +...+.
T Consensus 57 v~a~TGsGKT-----~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~ 130 (417)
T 2i4i_A 57 ACAQTGSGKT-----AAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKF-SYRSRV 130 (417)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHH-HTTSSC
T ss_pred EEcCCCCHHH-----HHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHH-hCcCCc
Confidence 4699999999 5555554432211000 000011122346899999999999999887543 323333
Q ss_pred EeeeeeEEEeccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHH
Q psy2470 277 EYISRGYMFRKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQ 342 (858)
Q Consensus 277 ~~~~vG~~vr~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~ 342 (858)
. ++...+.... ...+++|+|+|||+|++ +.. ...+..+.+| ++++ .++...+...+. .
T Consensus 131 ~---~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~i~~-~ 202 (417)
T 2i4i_A 131 R---PCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLD----MGFEPQIRRIVE-Q 202 (417)
T ss_dssp C---EEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHH----TTCHHHHHHHHT-S
T ss_pred e---EEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhc----cCcHHHHHHHHH-h
Confidence 3 2222222111 12457999999999998 433 2346666655 5555 333332222211 1
Q ss_pred hcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe---ecceeEEEecCCccchHHHHHHHHHHHHhhC-
Q psy2470 343 LKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH---LYPVSVYYSNDPVVNYVQGVVDTAIKIHESM- 416 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~---~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~- 416 (858)
.........|+++||||+. .+.+...+.. ++..+.+... ...+...+......+ +...+.+++...
T Consensus 203 ~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~l~~~l~~~~ 274 (417)
T 2i4i_A 203 DTMPPKGVRHTMMFSATFPKEIQMLARDFLD----EYIFLAVGRVGSTSENITQKVVWVEESD----KRSFLLDLLNATG 274 (417)
T ss_dssp SSCCCBTTBEEEEEESCCCHHHHHHHHHHCS----SCEEEEEC----CCSSEEEEEEECCGGG----HHHHHHHHHHTCC
T ss_pred ccCCCcCCcEEEEEEEeCCHHHHHHHHHHcC----CCEEEEeCCCCCCccCceEEEEEeccHh----HHHHHHHHHHhcC
Confidence 1001123689999999994 3455554442 3333333221 123344443333222 334455555544
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..+++|||++++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|+|++
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~ 347 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKH 347 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHC-------CCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCE
Confidence 4678999999999999999999976 888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||+ || .|.|..+|.||+|||||.|. |.||.++
T Consensus 348 Vi~--------~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~~~ 380 (417)
T 2i4i_A 348 VIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATSFF 380 (417)
T ss_dssp EEE--------SS----------CCSSHHHHHHHHTTBCC--CCEEEEEEE
T ss_pred EEE--------Ec----------CCCCHHHHHHhcCccccCCCCceEEEEE
Confidence 999 66 57889999999999999987 9999999
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1e-32 Score=346.36 Aligned_cols=298 Identities=14% Similarity=0.078 Sum_probs=207.8
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||||||+ ++.+|.+... . ...++++++|||+||.|.+.++.+.++ . +|+
T Consensus 202 vLV~ApTGSGKTl-----va~l~i~~~l-------~-----~g~rvlvl~PtraLa~Q~~~~l~~~~~-~-------Vgl 256 (1108)
T 3l9o_A 202 VLVSAHTSAGKTV-----VAEYAIAQSL-------K-----NKQRVIYTSPIKALSNQKYRELLAEFG-D-------VGL 256 (1108)
T ss_dssp EEEECCSSSHHHH-----HHHHHHHHHH-------H-----TTCEEEEEESSHHHHHHHHHHHHHHTS-S-------EEE
T ss_pred EEEECCCCCChHH-----HHHHHHHHHH-------h-----cCCeEEEEcCcHHHHHHHHHHHHHHhC-C-------ccE
Confidence 4567999999994 3334322211 1 112579999999999999999988776 3 454
Q ss_pred EEeccceeecceeEEEeecCcccc-CCCcc-CCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGVEP-ISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~~~-~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.. ++......++|+|||||+|++ +..+. .+.++.+| ++.+ .++...+...+. ..+++.|+++
T Consensus 257 lt-Gd~~~~~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d----~~rg~~~e~ii~-----~l~~~~qvl~ 326 (1108)
T 3l9o_A 257 MT-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD----KERGVVWEETII-----LLPDKVRYVF 326 (1108)
T ss_dssp EC-SSCBCCCSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTS----HHHHHHHHHHHH-----HSCTTSEEEE
T ss_pred Ee-CccccCCCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhccc----cchHHHHHHHHH-----hcCCCceEEE
Confidence 22 233344568999999999999 44443 36666666 6766 554444444443 5578899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCcc----------c-----h------------------
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVV----------N-----Y------------------ 401 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~----------~-----~------------------ 401 (858)
||||+ +...+++|+.........++..+.+..|++.++...... . +
T Consensus 327 lSATipn~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 406 (1108)
T 3l9o_A 327 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 406 (1108)
T ss_dssp EECSCSSCHHHHHHHHHHTCSCEEEEEECCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC-----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHhhhccccccc
Confidence 99999 777888887632222345566666667776655321100 0 0
Q ss_pred ------------------HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----------------
Q psy2470 402 ------------------VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRE----------------- 446 (858)
Q Consensus 402 ------------------~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~----------------- 446 (858)
....+..++..+.....+++|||++++++|+.++..|........
T Consensus 407 ~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 486 (1108)
T 3l9o_A 407 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 486 (1108)
T ss_dssp ------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHHHGGGSCTHH
T ss_pred ccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhhc
Confidence 022233344555556678999999999999999999863200000
Q ss_pred ------Cc---------ceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 447 ------DL---------KLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 447 ------~~---------~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ ...+.++||+|++.+|..+++.|++|.++|||||+++++|||||++++||+++. .||..
T Consensus 487 ~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~ikVLVAT~vla~GIDiP~v~~VI~~~~----~~d~~ 562 (1108)
T 3l9o_A 487 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVR----KWDGQ 562 (1108)
T ss_dssp HHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTCCCEEEEESCCCSCCCC--CEEEESCSE----EESSS
T ss_pred chhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCCCeEEEECcHHhcCCCCCCceEEEecCc----ccCcc
Confidence 00 011788999999999999999999999999999999999999999999999542 24422
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~ 546 (858)
. ..|+|..+|+||+|||||.| .|.||.++
T Consensus 563 ~------~r~iS~~eyiQr~GRAGR~G~d~~G~~ill~ 594 (1108)
T 3l9o_A 563 Q------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 594 (1108)
T ss_dssp C------EEECCHHHHHHHHHHSCCSSSCSSEEEEEEE
T ss_pred c------cccCCHHHHHHhhcccCCCCCCCceEEEEEe
Confidence 1 26899999999999999999 59999999
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=299.22 Aligned_cols=280 Identities=13% Similarity=0.134 Sum_probs=195.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+... .. +....++|+++||++++.|+++++.+ ++...+.. ++...
T Consensus 63 i~a~TGsGKT-----~~~~~~~~~~~----~~-----~~~~~~~lil~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 124 (400)
T 1s2m_A 63 ARAKNGTGKT-----AAFVIPTLEKV----KP-----KLNKIQALIMVPTRELALQTSQVVRT-LGKHCGIS---CMVTT 124 (400)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHC----CT-----TSCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCC---EEEEC
T ss_pred EECCCCcHHH-----HHHHHHHHHHH----hh-----ccCCccEEEEcCCHHHHHHHHHHHHH-HhcccCce---EEEEe
Confidence 4699999999 44444433211 10 01223589999999999999887754 33344444 33322
Q ss_pred eccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++++ .++...+ +.+. ...++..
T Consensus 125 g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~----~~~~~~~-~~i~----~~~~~~~ 195 (400)
T 1s2m_A 125 GGTNLRDDILRLNETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKMLS----RDFKTII-EQIL----SFLPPTH 195 (400)
T ss_dssp SSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSS----HHHHHHH-HHHH----TTSCSSC
T ss_pred CCcchHHHHHHhcCCCCEEEEchHHHHHHHHhCCcccccCCEEEEeCchHhhh----hchHHHH-HHHH----HhCCcCc
Confidence 22211 12457999999999988 332 2346666665 5666 4433222 2222 2456788
Q ss_pred eEEEEecccCHH--H-HHHHhhcccCCCCcEEEecCe--ecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 352 KLIISSATVDAE--E-ICQFYNISASSNATILSVKGH--LYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 352 q~il~SAT~~~~--~-~~~~~~~~~~~~~~~i~v~g~--~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
|+++||||++.. . +..++. ++..+.+... ...+..++......+ +...+..++.....+++|||++
T Consensus 196 ~~i~lSAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~----k~~~l~~~~~~~~~~~~lVf~~ 266 (400)
T 1s2m_A 196 QSLLFSATFPLTVKEFMVKHLH-----KPYEINLMEELTLKGITQYYAFVEERQ----KLHCLNTLFSKLQINQAIIFCN 266 (400)
T ss_dssp EEEEEESCCCHHHHHHHHHHCS-----SCEEESCCSSCBCTTEEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEECS
T ss_pred eEEEEEecCCHHHHHHHHHHcC-----CCeEEEeccccccCCceeEEEEechhh----HHHHHHHHHhhcCCCcEEEEEe
Confidence 999999999532 2 233333 2333322221 123444544433322 3344555555566789999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|..+++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 267 ~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~------- 332 (400)
T 1s2m_A 267 STNRVELLAKKITDL-------GYSCYYSHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN------- 332 (400)
T ss_dssp SHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE-------
T ss_pred cHHHHHHHHHHHHhc-------CCCeEEecCCCCHHHHHHHHHHHhcCCCcEEEEcCccccCCCccCCCEEEE-------
Confidence 999999999999987 788999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+|||||.|. |.||.++
T Consensus 333 -~~----------~p~s~~~~~Qr~GR~gR~g~~g~~~~l~ 362 (400)
T 1s2m_A 333 -FD----------FPKTAETYLHRIGRSGRFGHLGLAINLI 362 (400)
T ss_dssp -SS----------CCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred -eC----------CCCCHHHHHHhcchhcCCCCCceEEEEe
Confidence 66 57889999999999999986 9999999
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-32 Score=314.67 Aligned_cols=273 Identities=14% Similarity=0.070 Sum_probs=195.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+..... ...++||++|||++|.|+++++. |.. ++|..
T Consensus 24 v~a~TGsGKT-----~~~~~~~l~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~-------g~~---v~~~~ 77 (451)
T 2jlq_A 24 MDLHPGAGKT-----KRILPSIVREALL-----------RRLRTLILAPTRVVAAEMEEALR-------GLP---IRYQT 77 (451)
T ss_dssp ECCCTTSSCC-----TTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT-------TSC---EEECC
T ss_pred EECCCCCCHh-----hHHHHHHHHHHHh-----------cCCcEEEECCCHHHHHHHHHHhc-------Cce---eeeee
Confidence 3699999999 5555554332111 11358999999999999988762 333 66655
Q ss_pred eccc-eeecceeEEEeecCcccc-CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEec
Q psy2470 286 RKGR-MKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSA 358 (858)
Q Consensus 286 r~~~-~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SA 358 (858)
+... ....++.|.++|+|++.+ +..+..+.++++| ..++ ...+..++++... ..+++.|+++|||
T Consensus 78 ~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~--~~~~~~~~~~~~~------~~~~~~~~i~~SA 149 (451)
T 2jlq_A 78 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTD--PCSVAARGYISTR------VEMGEAAAIFMTA 149 (451)
T ss_dssp TTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCS--HHHHHHHHHHHHH------HHTTSCEEEEECS
T ss_pred ccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCC--cchHHHHHHHHHh------hcCCCceEEEEcc
Confidence 5443 233457899999999998 7777778888777 2113 0123334444322 2346799999999
Q ss_pred ccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHH
Q psy2470 359 TVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGIL 438 (858)
Q Consensus 359 T~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L 438 (858)
|++.+....++. +++++.++ +..|... |. . . ...+.. ..+++|||++++++++.+++.|
T Consensus 150 T~~~~~~~~~~~-----~~~~~~~~-~~~p~~~-~~-----~----~----~~~l~~-~~~~~lVF~~s~~~a~~l~~~L 208 (451)
T 2jlq_A 150 TPPGSTDPFPQS-----NSPIEDIE-REIPERS-WN-----T----G----FDWITD-YQGKTVWFVPSIKAGNDIANCL 208 (451)
T ss_dssp SCTTCCCSSCCC-----SSCEEEEE-CCCCSSC-CS-----S----S----CHHHHH-CCSCEEEECSSHHHHHHHHHHH
T ss_pred CCCccchhhhcC-----CCceEecC-ccCCchh-hH-----H----H----HHHHHh-CCCCEEEEcCCHHHHHHHHHHH
Confidence 995432222222 45555443 2222111 10 0 0 111122 3679999999999999999999
Q ss_pred HHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcce
Q psy2470 439 KQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLV 518 (858)
Q Consensus 439 ~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~ 518 (858)
++. ++.+..+||++. .++++.|++|+.+||||||++|+|||||+ ++|||+|+.+.+.|| ..+.+.+.
T Consensus 209 ~~~-------g~~~~~lh~~~~----~~~~~~f~~g~~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d-~~~~~~l~ 275 (451)
T 2jlq_A 209 RKS-------GKRVIQLSRKTF----DTEYPKTKLTDWDFVVTTDISEMGANFRA-GRVIDPRRCLKPVIL-TDGPERVI 275 (451)
T ss_dssp HTT-------TCCEEEECTTTH----HHHGGGGGSSCCSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEE-CSSSCEEE
T ss_pred HHc-------CCeEEECCHHHH----HHHHHhhccCCceEEEECCHHHhCcCCCC-CEEEECCCccccccc-ccccceee
Confidence 876 788999999754 57899999999999999999999999999 999999999999998 56777777
Q ss_pred e---eecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 519 V---VPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 519 ~---~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
. .|.|.++|.||+|||||.| +|.||.++
T Consensus 276 ~~~~~p~s~~~y~Qr~GRaGR~g~~~g~~~~~~ 308 (451)
T 2jlq_A 276 LAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 308 (451)
T ss_dssp EEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ecccccCCHHHHHHhccccCCCCCCCccEEEEe
Confidence 6 9999999999999999999 58998876
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.2e-31 Score=317.01 Aligned_cols=301 Identities=13% Similarity=0.106 Sum_probs=196.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++++|.+...... ... +.....+||++|||+||.|+++++.+..+...+.....+....
T Consensus 116 v~apTGsGKT-----l~~~lpil~~l~~~--~~~---~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~ 185 (563)
T 3i5x_A 116 ARAKTGTGKT-----FAFLIPIFQHLINT--KFD---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLV 185 (563)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHT--TTS---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEEC
T ss_pred EECCCCCCcc-----HHHHHHHHHHHHhc--ccc---ccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEE
Confidence 4699999999 66666654432221 101 1223468999999999999998886643211111000011111
Q ss_pred eccc-------eeecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHH--HHhcccC
Q psy2470 286 RKGR-------MKILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFA--EQLKPLK 347 (858)
Q Consensus 286 r~~~-------~~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~--~~l~~~~ 347 (858)
+... .....++|+|+|||+|++ +.. ...++.+.+| ++++ .+|...+...+. .......
T Consensus 186 g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~----~~f~~~~~~i~~~l~~~~~~~ 261 (563)
T 3i5x_A 186 GGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE----IGFRDDLETISGILNEKNSKS 261 (563)
T ss_dssp TTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS----TTTHHHHHHHHHHHHHHCSSC
T ss_pred CCcCHHHHHHHHhcCCCCEEEECcHHHHHHHHhccccccccceEEEEeCHHHHhc----cchHHHHHHHHHhhhhccccC
Confidence 1111 112357999999999998 433 2245556555 6776 444332222211 0111223
Q ss_pred CCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe-------ecceeEEEecC-CccchHHHHHHHHHHHHhh-C
Q psy2470 348 RTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH-------LYPVSVYYSND-PVVNYVQGVVDTAIKIHES-M 416 (858)
Q Consensus 348 ~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~~~~~-~~~~~~~~~~~~l~~i~~~-~ 416 (858)
.++.|+++||||++ +..+...+.. ++..+.+... ...+...+... ...+........+...+.. .
T Consensus 262 ~~~~~~l~~SAT~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 337 (563)
T 3i5x_A 262 ADNIKTLLFSATLDDKVQKLANNIMN----KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERD 337 (563)
T ss_dssp TTCCEEEEEESSCCTHHHHHTTTTCC----SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTT
T ss_pred ccCceEEEEEccCCHHHHHHHHHhcC----CCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcC
Confidence 45789999999994 4555555442 3333333211 11222222221 1122222333444443333 5
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
+.+++|||+++++.++.+++.|++... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++
T Consensus 338 ~~~~~iVF~~s~~~~~~l~~~L~~~~~----~~~~v~~~h~~~~~~~R~~~~~~f~~g~~~vLvaT~~~~~GiDip~v~~ 413 (563)
T 3i5x_A 338 SNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFPNVHE 413 (563)
T ss_dssp TCCEEEEECSCHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCTTCCE
T ss_pred CCCcEEEEcCcHHHHHHHHHHHHHhcc----CCceEEEecCCCCHHHHHHHHHHHhcCCCCEEEEcchhhcCCCcccCCE
Confidence 578999999999999999999986421 2788999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||+ || .|.+.++|+||+|||||.|. |.|+.++
T Consensus 414 VI~--------~~----------~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 446 (563)
T 3i5x_A 414 VLQ--------IG----------VPSELANYIHRIGRTARSGKEGSSVLFI 446 (563)
T ss_dssp EEE--------ES----------CCSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred EEE--------EC----------CCCchhhhhhhcCccccCCCCceEEEEE
Confidence 999 66 67788999999999999986 9999998
|
| >3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.7e-32 Score=322.66 Aligned_cols=297 Identities=13% Similarity=0.104 Sum_probs=196.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh----CCcCccEeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM----GCRMDFEYISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~----g~~~g~~~~~v 281 (858)
+.|+|||||| .+|++|.+.....- ... +.....+||++|||+||.|+++++.+.. +......
T Consensus 65 v~apTGsGKT-----l~~~lpil~~l~~~--~~~---~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~---- 130 (579)
T 3sqw_A 65 ARAKTGTGKT-----FAFLIPIFQHLINT--KFD---SQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYAC---- 130 (579)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHT--TTS---STTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCE----
T ss_pred EEcCCCcHHH-----HHHHHHHHHHHHhc--ccc---ccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEE----
Confidence 4599999999 66666654432211 111 1223468999999999999998886643 2221111
Q ss_pred eEEEeccce-------eecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHH--HHh
Q psy2470 282 GYMFRKGRM-------KILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFA--EQL 343 (858)
Q Consensus 282 G~~vr~~~~-------~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~--~~l 343 (858)
......... ....++|+|+|||+|++ +.. ...+..+.+| ++++ .+|...+...+. ...
T Consensus 131 ~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~----~gf~~~~~~i~~~l~~~ 206 (579)
T 3sqw_A 131 VSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLE----IGFRDDLETISGILNEK 206 (579)
T ss_dssp EEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTS----TTTHHHHHHHHHHHHHH
T ss_pred EEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHHhccccccccCCEEEEEChHHhhc----CCCHHHHHHHHHHhhhh
Confidence 111111111 12358999999999998 433 2345555554 6777 444333222221 011
Q ss_pred cccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEecCe-------ecceeEEEecCC-ccchHHHHHHHHHHHH
Q psy2470 344 KPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSVKGH-------LYPVSVYYSNDP-VVNYVQGVVDTAIKIH 413 (858)
Q Consensus 344 ~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~~~~~~-~~~~~~~~~~~l~~i~ 413 (858)
.....++.|+++||||++ +..+...+.. ++..+.+... ...+...+.... ........+..+....
T Consensus 207 ~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~ 282 (579)
T 3sqw_A 207 NSKSADNIKTLLFSATLDDKVQKLANNIMN----KKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQI 282 (579)
T ss_dssp CSSCTTCCEEEEEESSCCTHHHHHTTTTCC----SSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHH
T ss_pred hcccccCceEEEEeccCChHHHHHHHHHcC----CCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHH
Confidence 122345789999999994 3455554442 3333333211 112333222211 1222223334444433
Q ss_pred hh-CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC
Q psy2470 414 ES-MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP 492 (858)
Q Consensus 414 ~~-~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp 492 (858)
.. .+.+++|||++|++.++.+++.|++... .++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|
T Consensus 283 ~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~----~~~~v~~~hg~~~~~~R~~~~~~F~~g~~~vLVaT~~~~~GiDip 358 (579)
T 3sqw_A 283 KERDSNYKAIIFAPTVKFTSFLCSILKNEFK----KDLPILEFHGKITQNKRTSLVKRFKKDESGILVCTDVGARGMDFP 358 (579)
T ss_dssp HHTTTCCEEEEECSSHHHHHHHHHHHHHHHT----TTSCEEEESTTSCHHHHHHHHHHHHHCSSEEEEECGGGTSSCCCT
T ss_pred hhcCCCCcEEEECCcHHHHHHHHHHHHHhhc----CCCcEEEecCCCCHHHHHHHHHHhhcCCCeEEEEcchhhcCCCcc
Confidence 33 4567999999999999999999986421 277899999999999999999999999999999999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|++||+ |+ .|.+.++|+||+|||||.|. |.|+.++
T Consensus 359 ~v~~VI~--------~~----------~p~s~~~y~Qr~GRagR~g~~g~~i~~~ 395 (579)
T 3sqw_A 359 NVHEVLQ--------IG----------VPSELANYIHRIGRTARSGKEGSSVLFI 395 (579)
T ss_dssp TCCEEEE--------ES----------CCSSTTHHHHHHTTSSCTTCCEEEEEEE
T ss_pred cCCEEEE--------cC----------CCCCHHHhhhhccccccCCCCceEEEEE
Confidence 9999999 66 67788999999999999996 9999999
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-31 Score=298.66 Aligned_cols=283 Identities=13% Similarity=0.171 Sum_probs=196.2
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+++ .+|.+.. +.. ......+||++||++++.|+++++.+.....-+.. ++...
T Consensus 50 v~a~TGsGKT~~~-----~~~~~~~----l~~-----~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~---~~~~~ 112 (391)
T 1xti_A 50 CQAKSGMGKTAVF-----VLATLQQ----LEP-----VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK---VAVFF 112 (391)
T ss_dssp EECSSCSSHHHHH-----HHHHHHH----CCC-----CTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCC---EEEEC
T ss_pred EECCCCCcHHHHH-----HHHHHHh----hcc-----cCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeE---EEEEe
Confidence 4699999999444 3332221 111 01223589999999999999888765543221333 33322
Q ss_pred ecccee-------ecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK-------ILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~-------~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ...++|+|+|||+|++ +.. ...+.++.++ ++.+ ..++...+.+.+. ..+++
T Consensus 113 g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~---~~~~~~~~~~~~~-----~~~~~ 184 (391)
T 1xti_A 113 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE---QLDMRRDVQEIFR-----MTPHE 184 (391)
T ss_dssp TTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCSEEEECSHHHHTS---SHHHHHHHHHHHH-----TSCSS
T ss_pred CCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHcCCccccccCEEEEeCHHHHhh---ccchHHHHHHHHh-----hCCCC
Confidence 222111 1236999999999998 332 2345666655 4433 0133333333322 45668
Q ss_pred ceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCee----cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 351 LKLIISSATV--DAEEICQFYNISASSNATILSVKGHL----YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~----~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
.|+++||||+ +...+...+.. ++..+.+.... ..+..++......+ +...+..++.....+++|||
T Consensus 185 ~~~i~~SAT~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~~~~~~lvf 256 (391)
T 1xti_A 185 KQVMMFSATLSKEIRPVCRKFMQ----DPMEIFVDDETKLTLHGLQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIF 256 (391)
T ss_dssp SEEEEEESSCCSTHHHHHHHHCS----SCEEEECCCCCCCCCTTCEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEE
T ss_pred ceEEEEEeeCCHHHHHHHHHHcC----CCeEEEecCccccCcccceEEEEEcCchh----HHHHHHHHHHhcCCCcEEEE
Confidence 9999999999 34444443332 34444443321 23444554433332 33445555555667899999
Q ss_pred cCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcc
Q psy2470 425 VIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVK 504 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k 504 (858)
+++.++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 257 ~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~----- 324 (391)
T 1xti_A 257 VKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFN----- 324 (391)
T ss_dssp CSCHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTCCSEEEESCCCSSCBCCTTEEEEEE-----
T ss_pred eCcHHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCCCcEEEECChhhcCCCcccCCEEEE-----
Confidence 99999999999999977 788999999999999999999999999999999999999999999999999
Q ss_pred ceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 505 ARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 505 ~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+||+||.|. |.|+.++
T Consensus 325 ---~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 354 (391)
T 1xti_A 325 ---YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 354 (391)
T ss_dssp ---SS----------CCSSHHHHHHHHCBCSSSCCCCEEEEEE
T ss_pred ---eC----------CCCCHHHHHHhcccccCCCCceEEEEEE
Confidence 65 57789999999999999986 9999999
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-31 Score=291.18 Aligned_cols=277 Identities=14% Similarity=0.161 Sum_probs=196.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||++++ +|.+.. +. . .....+|+++|+++++.|+++++.+..+. .+.. ++...
T Consensus 49 ~~~~TGsGKT~~~~-----~~~~~~----~~---~---~~~~~~lil~P~~~L~~q~~~~~~~~~~~-~~~~---v~~~~ 109 (367)
T 1hv8_A 49 AQARTGSGKTASFA-----IPLIEL----VN---E---NNGIEAIILTPTRELAIQVADEIESLKGN-KNLK---IAKIY 109 (367)
T ss_dssp EECCSSSSHHHHHH-----HHHHHH----SC---S---SSSCCEEEECSCHHHHHHHHHHHHHHHCS-SCCC---EEEEC
T ss_pred EECCCCChHHHHHH-----HHHHHH----hc---c---cCCCcEEEEcCCHHHHHHHHHHHHHHhCC-CCce---EEEEE
Confidence 35999999994433 332221 11 0 12235899999999999999988766543 2222 22222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+||++|++ +.. ...+.++.++ ++.+ .++...+.+.+. ..+++.|
T Consensus 110 ~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 180 (367)
T 1hv8_A 110 GGKAIYPQIKALKNANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEMLN----MGFIKDVEKILN-----ACNKDKR 180 (367)
T ss_dssp TTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHT----TTTHHHHHHHHH-----TSCSSCE
T ss_pred CCcchHHHHhhcCCCCEEEecHHHHHHHHHcCCcccccCCEEEEeCchHhhh----hchHHHHHHHHH-----hCCCCce
Confidence 22111 11357999999999998 333 3346666665 5555 444444444433 5567899
Q ss_pred EEEEecccCHH--H-HHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE--E-ICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~--~-~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+++||||++.+ . +..++. +...+... ....++..+......+. ...+..++. ...+++|||+++.+
T Consensus 181 ~i~~SAT~~~~~~~~~~~~~~-----~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~l~~~l~-~~~~~~lvf~~~~~ 249 (367)
T 1hv8_A 181 ILLFSATMPREILNLAKKYMG-----DYSFIKAK-INANIEQSYVEVNENER----FEALCRLLK-NKEFYGLVFCKTKR 249 (367)
T ss_dssp EEEECSSCCHHHHHHHHHHCC-----SEEEEECC-SSSSSEEEEEECCGGGH----HHHHHHHHC-STTCCEEEECSSHH
T ss_pred EEEEeeccCHHHHHHHHHHcC-----CCeEEEec-CCCCceEEEEEeChHHH----HHHHHHHHh-cCCCcEEEEECCHH
Confidence 99999999543 2 334444 33333332 22355555554443333 334444444 45678999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ |+
T Consensus 250 ~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~ 314 (367)
T 1hv8_A 250 DTKELASMLRDI-------GFKAGAIHGDLSQSQREKVIRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH 314 (367)
T ss_dssp HHHHHHHHHHHT-------TCCEEEECSSSCHHHHHHHHHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS
T ss_pred HHHHHHHHHHhc-------CCCeEEeeCCCCHHHHHHHHHHHHcCCCeEEEECChhhcCCCcccCCEEEE--------ec
Confidence 999999999977 788999999999999999999999999999999999999999999999999 55
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|..+|.||+||+||.|. |.|+.++
T Consensus 315 ----------~~~s~~~~~Q~~GR~~R~g~~g~~~~~~ 342 (367)
T 1hv8_A 315 ----------LPQNPESYMHRIGRTGRAGKKGKAISII 342 (367)
T ss_dssp ----------CCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred ----------CCCCHHHhhhcccccccCCCccEEEEEE
Confidence 57889999999999999985 9999999
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-31 Score=305.52 Aligned_cols=271 Identities=17% Similarity=0.106 Sum_probs=185.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+..... ....+||++|||+||.|+++++. | .. +++..
T Consensus 26 v~a~TGsGKT-----~~~~l~il~~~~~-----------~~~~~lvl~Ptr~La~Q~~~~l~---g----~~---v~~~~ 79 (459)
T 2z83_A 26 LDLHPGSGKT-----RKILPQIIKDAIQ-----------QRLRTAVLAPTRVVAAEMAEALR---G----LP---VRYQT 79 (459)
T ss_dssp ECCCTTSCTT-----TTHHHHHHHHHHH-----------TTCCEEEEECSHHHHHHHHHHTT---T----SC---EEECC
T ss_pred EECCCCCCHH-----HHHHHHHHHHHHh-----------CCCcEEEECchHHHHHHHHHHhc---C----ce---EeEEe
Confidence 4699999999 5555554432111 11358999999999999988774 2 22 44433
Q ss_pred eccce-eecceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 286 RKGRM-KILVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 286 r~~~~-~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
+.... .++...+.++|.|.+.+ +..++.++++.+| +... .++.+++++... .+++.|+++|
T Consensus 80 ~~~~~~~t~~~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~----~~~~~~~~~~~~------~~~~~~~il~ 149 (459)
T 2z83_A 80 SAVQREHQGNEIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPA----SIAARGYIATKV------ELGEAAAIFM 149 (459)
T ss_dssp --------CCCSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHH----HHHHHHHHHHHH------HTTSCEEEEE
T ss_pred cccccCCCCCcEEEEEchHHHHHHhhccccccCCcEEEEECCccCCch----hhHHHHHHHHHh------ccCCccEEEE
Confidence 32221 22345677888888887 6667778887777 3222 355577776654 2367999999
Q ss_pred ecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHH
Q psy2470 357 SATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIG 436 (858)
Q Consensus 357 SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~ 436 (858)
|||++.+. ..+.. .+.|+..+... .| ...+. .... .+.. ..+++|||++++++++.+++
T Consensus 150 SAT~~~~~-~~~~~----~~~pi~~~~~~-~~---------~~~~~-~~~~----~l~~-~~~~~LVF~~s~~~~~~l~~ 208 (459)
T 2z83_A 150 TATPPGTT-DPFPD----SNAPIHDLQDE-IP---------DRAWS-SGYE----WITE-YAGKTVWFVASVKMGNEIAM 208 (459)
T ss_dssp CSSCTTCC-CSSCC----CSSCEEEEECC-CC---------SSCCS-SCCH----HHHH-CCSCEEEECSCHHHHHHHHH
T ss_pred EcCCCcch-hhhcc----CCCCeEEeccc-CC---------cchhH-HHHH----HHHh-cCCCEEEEeCChHHHHHHHH
Confidence 99995321 11111 13444433211 11 11110 0011 1122 26899999999999999999
Q ss_pred HHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCc
Q psy2470 437 ILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNS 516 (858)
Q Consensus 437 ~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~ 516 (858)
.|++. ++.+..+||+ +|.++++.|++|+.+||||||++|+|||||+ ++|||+|..+.+.|+ ..+.+.
T Consensus 209 ~L~~~-------g~~v~~lh~~----~R~~~~~~f~~g~~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~-~~~~~~ 275 (459)
T 2z83_A 209 CLQRA-------GKKVIQLNRK----SYDTEYPKCKNGDWDFVITTDISEMGANFGA-SRVIDCRKSVKPTIL-EEGEGR 275 (459)
T ss_dssp HHHHT-------TCCEEEESTT----CCCCCGGGSSSCCCSEEEESSCC---CCCSC-SEEEECCEECCEEEE-CSSSCE
T ss_pred HHHhc-------CCcEEecCHH----HHHHHHhhccCCCceEEEECChHHhCeecCC-CEEEECCcccccccc-cccccc
Confidence 99987 8889999984 7889999999999999999999999999999 999999988888765 234455
Q ss_pred cee---eecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 517 LVV---VPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 517 l~~---~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+.. .|.|.++|.||+|||||.| +|.||.++
T Consensus 276 ~~~~~d~p~s~~~~~QR~GRaGR~g~~~G~~~~~~ 310 (459)
T 2z83_A 276 VILGNPSPITSASAAQRRGRVGRNPNQVGDEYHYG 310 (459)
T ss_dssp EEECSCEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred cccccCCCCCHHHHHHhccccCCCCCCCCeEEEEE
Confidence 544 8999999999999999998 69999988
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-31 Score=300.57 Aligned_cols=281 Identities=16% Similarity=0.208 Sum_probs=85.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.. +... ....++|+++||++++.|+++++.+. ....+.. ++...
T Consensus 63 v~~~TGsGKT-----~~~~~~~~~~----l~~~-----~~~~~~lil~P~~~L~~q~~~~~~~~-~~~~~~~---~~~~~ 124 (394)
T 1fuu_A 63 AQAQSGTGKT-----GTFSIAALQR----IDTS-----VKAPQALMLAPTRELALQIQKVVMAL-AFHMDIK---VHACI 124 (394)
T ss_dssp ECCCSSHHHH-----HHHHHHHHHH----CCTT-----CCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCC---EEEEC
T ss_pred EECCCCChHH-----HHHHHHHHHH----hhcc-----CCCCCEEEEcCCHHHHHHHHHHHHHH-hccCCee---EEEEe
Confidence 4699999999 4444443321 1111 12346899999999999998887543 3233333 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++.+ .++...+.+.+. ..++..|
T Consensus 125 g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 195 (394)
T 1fuu_A 125 GGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS----SGFKEQIYQIFT-----LLPPTTQ 195 (394)
T ss_dssp SSCCHHHHHHHHHHCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-----HSCTTCE
T ss_pred CCCchHHHHhhcCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEEChHHhhC----CCcHHHHHHHHH-----hCCCCce
Confidence 22111 11257899999999998 432 3345566655 5555 444444444333 5567899
Q ss_pred EEEEecccCH--HHHH-HHhhcccCCCCcEEEecCeec---ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 353 LIISSATVDA--EEIC-QFYNISASSNATILSVKGHLY---PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 353 ~il~SAT~~~--~~~~-~~~~~~~~~~~~~i~v~g~~~---~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+++||||++. ..+. .++. ++..+.+..... .+..++......+ .+...+..+......+++|||++
T Consensus 196 ~i~~SAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~lVf~~ 267 (394)
T 1fuu_A 196 VVLLSATMPNDVLEVTTKFMR-----NPVRILVKKDELTLEGIKQFYVNVEEEE---YKYECLTDLYDSISVTQAVIFCN 267 (394)
T ss_dssp EEEECSSCCHHHHHHHHHHCC-----SCEEEEECC---------------------------------------------
T ss_pred EEEEEEecCHHHHHHHHHhcC-----CCeEEEecCccccCCCceEEEEEcCchh---hHHHHHHHHHhcCCCCcEEEEEC
Confidence 9999999953 2333 4444 344444433222 1222222222111 12334444554555689999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
++++++.+++.|++. ++.+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+
T Consensus 268 ~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gldi~~~~~Vi~------- 333 (394)
T 1fuu_A 268 TRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVIN------- 333 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHHc-------CCeEEEeeCCCCHHHHHHHHHHHHCCCCcEEEECChhhcCCCcccCCEEEE-------
Confidence 999999999999876 888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|..+|.||+||+||.|. |.|+.++
T Consensus 334 -~~----------~p~s~~~~~Qr~GR~~R~g~~g~~~~~~ 363 (394)
T 1fuu_A 334 -YD----------LPANKENYIHRIGRGGRFGRKGVAINFV 363 (394)
T ss_dssp -----------------------------------------
T ss_pred -eC----------CCCCHHHHHHHcCcccCCCCCceEEEEE
Confidence 55 57788999999999999986 9999999
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.2e-31 Score=311.29 Aligned_cols=271 Identities=15% Similarity=0.092 Sum_probs=189.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+|.+..... ...++||++|||+||.|+++++. |.. ++|..
T Consensus 191 v~a~TGSGKT-----~~~~lpil~~l~~-----------~~~~vLvl~PtreLa~Qi~~~l~-------~~~---v~~~~ 244 (618)
T 2whx_A 191 MDLHPGAGKT-----KRILPSIVREALK-----------RRLRTLILAPTRVVAAEMEEALR-------GLP---IRYQT 244 (618)
T ss_dssp ECCCTTSSTT-----TTHHHHHHHHHHH-----------TTCCEEEEESSHHHHHHHHHHTT-------TSC---EEECC
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHHh-----------CCCeEEEEcChHHHHHHHHHHhc-------CCc---eeEec
Confidence 4699999999 6665664432211 11358999999999999987663 333 66655
Q ss_pred ec-cceeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhh--hhHHHHHHHHhcccCCCCceEEE
Q psy2470 286 RK-GRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVI--GEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 286 r~-~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~l--l~~lk~~~~~l~~~~~~~~q~il 355 (858)
+. +.....+..+.++|.|.+.+ +..++.++++++| ++ + .++. ++.+.... .+++.|+++
T Consensus 245 ~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~-~----~~~~~~~~~i~~~l------~~~~~q~il 313 (618)
T 2whx_A 245 PAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFT-D----PCSVAARGYISTRV------EMGEAAAIF 313 (618)
T ss_dssp TTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCC-S----HHHHHHHHHHHHHH------HHTSCEEEE
T ss_pred ccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCC-C----ccHHHHHHHHHHHh------cccCccEEE
Confidence 43 22333455677777777776 5566678888777 33 5 3333 22222211 136799999
Q ss_pred EecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHH
Q psy2470 356 SSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHII 435 (858)
Q Consensus 356 ~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~ 435 (858)
||||++.. ...++. .+++.+.++.. +|. ..... +...+.. ..+++|||++|+++++.++
T Consensus 314 ~SAT~~~~-~~~~~~----~~~~~~~v~~~-~~~------~~~~~--------ll~~l~~-~~~~~LVF~~s~~~a~~l~ 372 (618)
T 2whx_A 314 MTATPPGS-TDPFPQ----SNSPIEDIERE-IPE------RSWNT--------GFDWITD-YQGKTVWFVPSIKAGNDIA 372 (618)
T ss_dssp ECSSCTTC-CCSSCC----CSSCEEEEECC-CCS------SCCSS--------SCHHHHH-CCSCEEEECSSHHHHHHHH
T ss_pred EECCCchh-hhhhhc----cCCceeeeccc-CCH------HHHHH--------HHHHHHh-CCCCEEEEECChhHHHHHH
Confidence 99999432 111222 13455544432 111 11111 1112222 2679999999999999999
Q ss_pred HHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec--cCCCC
Q psy2470 436 GILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF--NPNTL 513 (858)
Q Consensus 436 ~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y--d~~~g 513 (858)
+.|++. ++.+..+||+ +|.++++.|++|+.+||||||+|||||||| |++|||+|+++.+.+ +...+
T Consensus 373 ~~L~~~-------g~~v~~lhg~----~R~~~l~~F~~g~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~ 440 (618)
T 2whx_A 373 NCLRKS-------GKRVIQLSRK----TFDTEYPKTKLTDWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPER 440 (618)
T ss_dssp HHHHHT-------TCCEEEECTT----THHHHTTHHHHSCCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCE
T ss_pred HHHHHc-------CCcEEEEChH----HHHHHHHhhcCCCcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCc
Confidence 999987 8889999984 788899999999999999999999999997 999999999877665 33334
Q ss_pred CCcceeeecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 514 TNSLVVVPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 514 ~~~l~~~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+......|.|.++|+||+|||||.| +|.||.++
T Consensus 441 ~~i~~d~P~s~~~yiQR~GRaGR~g~~~G~ai~l~ 475 (618)
T 2whx_A 441 VILAGPIPVTPASAAQRRGRIGRNPAQEDDQYVFS 475 (618)
T ss_dssp EEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred eEEcccccCCHHHHHHhccccCCCCCCCCeEEEEc
Confidence 5556668999999999999999996 69999987
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.3e-30 Score=320.91 Aligned_cols=299 Identities=14% Similarity=0.099 Sum_probs=209.8
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh-CCcCccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM-GCRMDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~-g~~~g~~~~~vG 282 (858)
+-+.|+||||||+++..+ ++... . ....++|++||++|+.|+++++.+.+ +..++..
T Consensus 57 vlv~apTGsGKTlv~~~~---i~~~~---------~-----~g~~vlvl~PtraLa~Q~~~~l~~~~~~~~v~~l----- 114 (997)
T 4a4z_A 57 VFVAAHTSAGKTVVAEYA---IAMAH---------R-----NMTKTIYTSPIKALSNQKFRDFKETFDDVNIGLI----- 114 (997)
T ss_dssp EEEECCTTSCSHHHHHHH---HHHHH---------H-----TTCEEEEEESCGGGHHHHHHHHHTTC--CCEEEE-----
T ss_pred EEEEECCCCcHHHHHHHH---HHHHH---------h-----cCCeEEEEeCCHHHHHHHHHHHHHHcCCCeEEEE-----
Confidence 446799999999433222 11111 1 11257999999999999999987655 3333333
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.+ +......++|+|+|||+|++ +.. ...+.++.+| ++.+ .++...+.+.+. ..+++.|+|
T Consensus 115 --~G-~~~~~~~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d----~~~g~~~e~ii~-----~l~~~v~iI 182 (997)
T 4a4z_A 115 --TG-DVQINPDANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVND----QDRGVVWEEVII-----MLPQHVKFI 182 (997)
T ss_dssp --CS-SCEECTTSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCT----TCTTCCHHHHHH-----HSCTTCEEE
T ss_pred --eC-CCccCCCCCEEEECHHHHHHHHHhCchhhcCCCEEEEECcccccc----cchHHHHHHHHH-----hcccCCCEE
Confidence 22 22334568999999999988 433 3356677766 7777 666555655555 567889999
Q ss_pred EEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc--------cch------------------------
Q psy2470 355 ISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV--------VNY------------------------ 401 (858)
Q Consensus 355 l~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~--------~~~------------------------ 401 (858)
+||||+ +...|++|+......+..++..+.+..|+++++..... ..+
T Consensus 183 lLSAT~~n~~ef~~~l~~~~~~~~~vi~~~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 262 (997)
T 4a4z_A 183 LLSATVPNTYEFANWIGRTKQKNIYVISTPKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGESAKGAPSKT 262 (997)
T ss_dssp EEECCCTTHHHHHHHHHHHHTCCEEEEECSSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC-----------
T ss_pred EEcCCCCChHHHHHHHhcccCCceEEEecCCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccccccccccc
Confidence 999999 88899999974332244566667777777765432100 000
Q ss_pred ---------------------------------------------------------HHHHHHHHHHHHhhCCCCCEEEE
Q psy2470 402 ---------------------------------------------------------VQGVVDTAIKIHESMPVGDILAF 424 (858)
Q Consensus 402 ---------------------------------------------------------~~~~~~~l~~i~~~~~~g~iLVF 424 (858)
....+..+...+.....+++|||
T Consensus 263 ~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~l~~~~~~~~IVF 342 (997)
T 4a4z_A 263 DNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNYLRKRELLPMVVF 342 (997)
T ss_dssp ------------------------------------------------------CCCCTTHHHHHHHHHHHTTCCSEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHHHHhCCCCCEEEE
Confidence 00123345566666667899999
Q ss_pred cCCHHHHHHHHHHHHHhccCC--------------------------------CCcceEEEeccCCCCHHHHHHhcCCCC
Q psy2470 425 VIGLEQIEHIIGILKQYHNQR--------------------------------EDLKLLILPMHGSLPNNEQIKVFRPTP 472 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~--------------------------------~~~~~~v~~LHg~l~q~~r~~v~~~f~ 472 (858)
++++++|+.+++.|....-.. ......+.++||+|++.+|..+++.|+
T Consensus 343 ~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~~~R~~v~~~F~ 422 (997)
T 4a4z_A 343 VFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLPIVKELIEILFS 422 (997)
T ss_dssp CSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCHHHHHHHHHHHH
Confidence 999999999999886420000 000114788999999999999999999
Q ss_pred CCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh
Q psy2470 473 RAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN 546 (858)
Q Consensus 473 ~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~ 546 (858)
+|.++|||||+++++|||+|++.+|| ++.++ ||... ..|+|.++|.||+|||||.| .|.||.++
T Consensus 423 ~G~~kVLvAT~~~a~GIDiP~~~VVi-~~~~k---~dg~~------~~~~s~~~y~Qr~GRAGR~G~~~~G~vi~l~ 489 (997)
T 4a4z_A 423 KGFIKVLFATETFAMGLNLPTRTVIF-SSIRK---HDGNG------LRELTPGEFTQMAGRAGRRGLDSTGTVIVMA 489 (997)
T ss_dssp TTCCSEEEECTHHHHSCCCCCSEEEE-SCSEE---EETTE------EEECCHHHHHHHHGGGCCTTTCSSEEEEEEC
T ss_pred CCCCcEEEEchHhhCCCCCCCceEEE-ecccc---ccCcc------CCCCCHHHHhHHhcccccCCCCcceEEEEec
Confidence 99999999999999999999966655 44444 55332 27999999999999999988 59999988
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.2e-30 Score=305.20 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=193.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
++++|||||| +++++|.+.. . ..+||++|+++|+.|.+.++.+ +|..++.. .|...
T Consensus 64 v~~pTGsGKT-----l~~~lpal~~---------~------g~~lVisP~~~L~~q~~~~l~~-~gi~~~~l---~~~~~ 119 (591)
T 2v1x_A 64 LVMPTGGGKS-----LCYQLPALCS---------D------GFTLVICPLISLMEDQLMVLKQ-LGISATML---NASSS 119 (591)
T ss_dssp EECCTTSCTT-----HHHHHHHHTS---------S------SEEEEECSCHHHHHHHHHHHHH-HTCCEEEC---CSSCC
T ss_pred EEECCCChHH-----HHHHHHHHHc---------C------CcEEEEeCHHHHHHHHHHHHHh-cCCcEEEE---eCCCC
Confidence 4699999999 5555554331 1 1479999999999999888754 56654433 22111
Q ss_pred eccce--------eecceeEEEeecCcccc-------CCCccCCCcccEE------EecCCCCCchhhhhH--HHHHHHH
Q psy2470 286 RKGRM--------KILVSKIFKMSQGKPSD-------SGVEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQ 342 (858)
Q Consensus 286 r~~~~--------~~~~t~I~v~TpGrLl~-------~~~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~ 342 (858)
..+.. .....+|+|+||++|.. +.....+..+.++ ++.+ .|.||...+ +..+.
T Consensus 120 ~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~~~~~l~~~~~~~~i~~iViDEAH~is~--~g~dfr~~~~~l~~l~-- 195 (591)
T 2v1x_A 120 KEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKMFMSRLEKAYEARRFTRIAVDEVHCCSQ--WGHDFRPDYKALGILK-- 195 (591)
T ss_dssp HHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHHHHHHHHHHHHTTCEEEEEEETGGGGST--TCTTCCGGGGGGGHHH--
T ss_pred HHHHHHHHHHhhcccCCCCEEEEChhHhhccHHHHHHHHhhhhccCCcEEEEECcccccc--cccccHHHHHHHHHHH--
Confidence 11000 12457999999998853 1122234455544 3332 112232221 11222
Q ss_pred hcccCCCCceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhh-CCC
Q psy2470 343 LKPLKRTQLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHES-MPV 418 (858)
Q Consensus 343 l~~~~~~~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~-~~~ 418 (858)
...++.|+++||||++.. .+.+++.. ..+.+...+-. ....+|...............+..++.. ...
T Consensus 196 ---~~~~~~~ii~lSAT~~~~v~~~i~~~l~~----~~~~~~~~~~~-r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~ 267 (591)
T 2v1x_A 196 ---RQFPNASLIGLTATATNHVLTDAQKILCI----EKCFTFTASFN-RPNLYYEVRQKPSNTEDFIEDIVKLINGRYKG 267 (591)
T ss_dssp ---HHCTTSEEEEEESSCCHHHHHHHHHHTTC----CSCEEEECCCC-CTTEEEEEEECCSSHHHHHHHHHHHHTTTTTT
T ss_pred ---HhCCCCcEEEEecCCCHHHHHHHHHHhCC----CCcEEEecCCC-CcccEEEEEeCCCcHHHHHHHHHHHHHHhccC
Confidence 223578999999999653 44556552 22333222211 1122332222222233455556666643 356
Q ss_pred CCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 419 GDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 419 g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
+++|||++++++++.+++.|+.. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||
T Consensus 268 ~~~IVf~~sr~~~e~la~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI 340 (591)
T 2v1x_A 268 QSGIIYCFSQKDSEQVTVSLQNL-------GIHAGAYHANLEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVI 340 (591)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEE
T ss_pred CCeEEEeCcHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEE
Confidence 78999999999999999999987 88999999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh--hhHhhh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN--FMYNRL 552 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~--~~~~~l 552 (858)
+ |+ .|-|.++|.||+|||||.|. |.|+.+| .+...+
T Consensus 341 ~--------~~----------~p~s~~~y~Qr~GRaGR~G~~g~~i~l~~~~D~~~~ 379 (591)
T 2v1x_A 341 H--------HS----------MSKSMENYYQESGRAGRDDMKADCILYYGFGDIFRI 379 (591)
T ss_dssp E--------SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEECHHHHHHH
T ss_pred E--------eC----------CCCCHHHHHHHhccCCcCCCCceEEEEEChHHHHHH
Confidence 9 66 67789999999999999986 9999999 444443
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-30 Score=305.54 Aligned_cols=262 Identities=16% Similarity=0.142 Sum_probs=178.9
Q ss_pred EEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCcccc-CCCc----cCCCcccEE---
Q psy2470 249 TIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE----PISQSYLVE--- 320 (858)
Q Consensus 249 ~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~----~~L~~~~vl--- 320 (858)
.++++|||+||.|+++++. ++|.+++.. +| +..++++||||+.+ +... .....++++
T Consensus 182 gl~l~PtR~LA~Qi~~~l~-~~g~~v~ll---tG-----------~~~~iv~TpGr~~~il~~T~e~~~l~~~v~lvVID 246 (677)
T 3rc3_A 182 GVYCGPLKLLAHEIFEKSN-AAGVPCDLV---TG-----------EERVTVQPNGKQASHVSCTVEMCSVTTPYEVAVID 246 (677)
T ss_dssp EEEEESSHHHHHHHHHHHH-HTTCCEEEE---CS-----------SCEECCSTTCCCCSEEEEEGGGCCSSSCEEEEEEC
T ss_pred eEEEeCHHHHHHHHHHHHH-hcCCcEEEE---EC-----------CeeEEecCCCcccceeEecHhHhhhcccCCEEEEe
Confidence 3888999999999999984 456654443 22 23346678887777 3222 233455555
Q ss_pred ---EecCCCCCchhhhhHHHHHHHHhcccCC-CCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEec
Q psy2470 321 ---LSILAPGGQDVIGEDMKAFAEQLKPLKR-TQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSN 395 (858)
Q Consensus 321 ---R~l~~~~~~d~ll~~lk~~~~~l~~~~~-~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~ 395 (858)
++++ .++...+.+.+. ..+ ++.|++++|||. ..+.+....+ ....+.-..+ .....+..
T Consensus 247 EaH~l~d----~~~g~~~~~~l~-----~l~~~~i~il~~SAT~~~i~~l~~~~~-----~~~~v~~~~r--~~~l~~~~ 310 (677)
T 3rc3_A 247 EIQMIRD----PARGWAWTRALL-----GLCAEEVHLCGEPAAIDLVMELMYTTG-----EEVEVRDYKR--LTPISVLD 310 (677)
T ss_dssp SGGGGGC----TTTHHHHHHHHH-----HCCEEEEEEEECGGGHHHHHHHHHHHT-----CCEEEEECCC--SSCEEECS
T ss_pred cceecCC----ccchHHHHHHHH-----ccCccceEEEeccchHHHHHHHHHhcC-----CceEEEEeee--cchHHHHH
Confidence 6677 667666666655 344 678999999996 3344444433 1111111111 11112211
Q ss_pred CCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCC--
Q psy2470 396 DPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPR-- 473 (858)
Q Consensus 396 ~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~-- 473 (858)
.... .+.....|+ +||++++++++.+++.|++. ++.+.++||+|++++|.++++.|++
T Consensus 311 ~~l~------------~l~~~~~g~-iIf~~s~~~ie~la~~L~~~-------g~~v~~lHG~L~~~~R~~~~~~F~~~~ 370 (677)
T 3rc3_A 311 HALE------------SLDNLRPGD-CIVCFSKNDIYSVSRQIEIR-------GLESAVIYGSLPPGTKLAQAKKFNDPN 370 (677)
T ss_dssp SCCC------------SGGGCCTTE-EEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHHHHHHHHCTT
T ss_pred HHHH------------HHHhcCCCC-EEEEcCHHHHHHHHHHHHhc-------CCCeeeeeccCCHHHHHHHHHHHHccC
Confidence 1111 111223454 78889999999999999976 7889999999999999999999998
Q ss_pred CcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC----CceEEEeh-hh
Q psy2470 474 AMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR----SGHVYRKN-FM 548 (858)
Q Consensus 474 g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g----~G~~~rL~-~~ 548 (858)
|+++||||||++|+|||| +|++|||+|++|. .||+..+. . ..|+|.++|.||+|||||.| +|.||+++ ++
T Consensus 371 g~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~-~~~~~G~~-~--~~p~s~~~~~QR~GRAGR~g~~g~~G~v~~l~~~d 445 (677)
T 3rc3_A 371 DPCKILVATDAIGMGLNL-SIRRIIFYSLIKP-SINEKGER-E--LEPITTSQALQIAGRAGRFSSRFKEGEVTTMNHED 445 (677)
T ss_dssp SSCCEEEECGGGGSSCCC-CBSEEEESCSBC---------------CBCCHHHHHHHHTTBTCTTSSCSSEEEEESSTTH
T ss_pred CCeEEEEeCcHHHCCcCc-CccEEEECCcccc-ccccCCcc-c--cccCCHHHHHHHhcCCCCCCCCCCCEEEEEEecch
Confidence 999999999999999999 9999999999887 78877443 2 46999999999999999999 48999999 33
Q ss_pred ---HhhhhhhhhccCCCCCCCCCCCccccCcc
Q psy2470 549 ---YNRLFIHFCVSRNIPTIPNDPKDVKCDVM 577 (858)
Q Consensus 549 ---~~~l~~~~~~~~~~p~~~~~Pei~r~~L~ 577 (858)
+..+.. . .. |++.+.++.
T Consensus 446 ~~~~~~~~~-----~---~~---~~i~~~~l~ 466 (677)
T 3rc3_A 446 LSLLKEILK-----R---PV---DPIRAAGLH 466 (677)
T ss_dssp HHHHHHHHH-----S---CC---CCCCCEEEC
T ss_pred HHHHHHHHh-----c---Cc---chhhhccCC
Confidence 344444 4 44 888888887
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-29 Score=326.46 Aligned_cols=427 Identities=10% Similarity=0.052 Sum_probs=261.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.+|.+.... +. ....+++++|+|+||.|.+..+.+.++...|.. ||.
T Consensus 945 vlv~APTGSGKT-----liaelail~~l~----~~------~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~---V~~ 1006 (1724)
T 4f92_B 945 VFVGAPTGSGKT-----ICAEFAILRMLL----QS------SEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK---VVL 1006 (1724)
T ss_dssp EEEECCTTSCCH-----HHHHHHHHHHHH----HC------TTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC---EEE
T ss_pred EEEEeCCCCCch-----HHHHHHHHHHHH----hC------CCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE---EEE
Confidence 445799999999 444444322111 10 112479999999999999999988887777776 554
Q ss_pred EEeccc---eeecceeEEEeecCcccc----CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRKGR---MKILVSKIFKMSQGKPSD----SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~~~---~~~~~t~I~v~TpGrLl~----~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
..+... .....++|+|||||++.. ......++++.++ .++.. +.-..+..++..+. .+....+++.
T Consensus 1007 ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~~~~l~~v~lvViDE~H~l~d-~rg~~le~il~rl~-~i~~~~~~~~ 1084 (1724)
T 4f92_B 1007 LTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQRKNVQNINLFVVDEVHLIGG-ENGPVLEVICSRMR-YISSQIERPI 1084 (1724)
T ss_dssp CCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTTCHHHHSCSEEEECCGGGGGS-TTHHHHHHHHHHHH-HHHHTTSSCC
T ss_pred EECCCCcchhhcCCCCEEEECHHHHHHHHhCcccccccceeeEEEeechhhcCC-CCCccHHHHHHHHH-HHHhhcCCCc
Confidence 333211 122458999999999744 2233345666655 44441 11112222333222 1112456789
Q ss_pred eEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCee--cceeEEEecCCccchHH---HHHHHHHH-HHhhCCCCCEEEE
Q psy2470 352 KLIISSATV-DAEEICQFYNISASSNATILSVKGHL--YPVSVYYSNDPVVNYVQ---GVVDTAIK-IHESMPVGDILAF 424 (858)
Q Consensus 352 q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~--~~v~~~~~~~~~~~~~~---~~~~~l~~-i~~~~~~g~iLVF 424 (858)
|+|+||||+ |++.+++|++.. ......+.... .|.+.+........... .....+.. +....+.+++|||
T Consensus 1085 riI~lSATl~N~~dla~WL~~~---~~~~~~~~~~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF 1161 (1724)
T 4f92_B 1085 RIVALSSSLSNAKDVAHWLGCS---ATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVF 1161 (1724)
T ss_dssp EEEEEESCBTTHHHHHHHHTCC---STTEEECCGGGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEE
T ss_pred eEEEEeCCCCCHHHHHHHhCCC---CCCeEEeCCCCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeee
Confidence 999999999 999999999742 23344443333 34444433222222111 11111222 2233456899999
Q ss_pred cCCHHHHHHHHHHHHHhccCC-C--------------------------CcceEEEeccCCCCHHHHHHhcCCCCCCcEE
Q psy2470 425 VIGLEQIEHIIGILKQYHNQR-E--------------------------DLKLLILPMHGSLPNNEQIKVFRPTPRAMRK 477 (858)
Q Consensus 425 l~t~~~i~~l~~~L~~~~~~~-~--------------------------~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~k 477 (858)
++++.+++.++..|....... . .-...|..+||+|++++|..+++.|++|.++
T Consensus 1162 ~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~i~ 1241 (1724)
T 4f92_B 1162 VPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGAIQ 1241 (1724)
T ss_dssp ESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTSBC
T ss_pred CCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCCCe
Confidence 999999999998875321100 0 0122377899999999999999999999999
Q ss_pred EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh-hhHhhhh
Q psy2470 478 IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN-FMYNRLF 553 (858)
Q Consensus 478 VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~-~~~~~l~ 553 (858)
|||||+++|+|||+|++.+||.+. ..||.... ...|.+..+|.||+|||||.|. |.|+.+. ..-....
T Consensus 1242 VLvaT~tlA~GVnlPa~~VVI~~~----~~~dg~~~----~~~~~s~~~~~Qm~GRAGR~g~d~~G~avll~~~~~~~~~ 1313 (1724)
T 4f92_B 1242 VVVASRSLCWGMNVAAHLVIIMDT----QYYNGKIH----AYVDYPIYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFF 1313 (1724)
T ss_dssp EEEEEGGGSSSCCCCBSEEEEECS----EEEETTTT----EEEECCHHHHHHHHTTBCCTTTCSCEEEEEEEEGGGHHHH
T ss_pred EEEEChHHHcCCCCCccEEEEecC----ccccCccc----ccCCCCHHHHHHhhccccCCCCCCceEEEEEecchHHHHH
Confidence 999999999999999999999632 34764432 3368999999999999999984 9999988 2211222
Q ss_pred hhhhccCCCCCCCCCCCccccCcccchhhhHHH----------------HHHHhhhHhHhHhh---h-CCCCCccc---c
Q psy2470 554 IHFCVSRNIPTIPNDPKDVKCDVMFHKVFFSFF----------------QYLLEAGWCYDTKL---I-GITEPRRI---S 610 (858)
Q Consensus 554 ~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~~~~----------------~~l~~~~~~l~~~~---~-~~~~~~~~---~ 610 (858)
.. . -++|+.+++.|. ..+..++ +|+..+-..-.... . +....... .
T Consensus 1314 ~~----l-----l~~~~pveS~L~--~~l~~~l~~eI~~~~i~~~~d~~~~l~~Tfl~~r~~~nP~~y~l~~~~~~~~~~ 1382 (1724)
T 4f92_B 1314 KK----F-----LYEPLPVESHLD--HCMHDHFNAEIVTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSD 1382 (1724)
T ss_dssp HH----H-----TTSCBCCCCCGG--GSCHHHHHHHHHTTSCCBHHHHHHHHTTSSHHHHHHHSGGGTTCSCCSHHHHHH
T ss_pred HH----H-----hCCCCceeeecc--cchHHHHHHHHHhcccCCHHHHHHHHHhhHHHHHHhcCcccccccccchhhHHH
Confidence 21 1 123777888875 3343332 23322211100000 0 00000000 1
Q ss_pred cCCchHHHHHHHHHhcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhH
Q psy2470 611 VTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDI 685 (858)
Q Consensus 611 ~l~~a~~~a~~~L~~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ 685 (858)
+++..+..+++.|.+.|++ ..++......| ++|+.++.++++|..+++ +.+++.+.....++
T Consensus 1383 ~l~~lv~~~l~~L~~~~~I-----~~~~~~~l~~T-----~lG~i~s~~yi~~~t~~~---~~~~l~~~~~~~~~ 1444 (1724)
T 4f92_B 1383 HLSELVEQTLSDLEQSKCI-----SIEDEMDVAPL-----NLGMIAAYYYINYTTIEL---FSMSLNAKTKVRGL 1444 (1724)
T ss_dssp HHHHHHHHHHHHHHHTTSE-----EEETTTEEEEC-----HHHHHHHHTTCCHHHHHH---HHHHCCTTCCHHHH
T ss_pred HHHHHHHHHHHHHHHCCCE-----EEcCCCCEeec-----HHHHHHHHHCCCHHHHHH---HHHhccccCCHHHH
Confidence 1222456788999999998 32222222245 999999999999999887 56666555444443
|
| >1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-30 Score=304.70 Aligned_cols=102 Identities=22% Similarity=0.172 Sum_probs=94.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC-----
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP----- 492 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp----- 492 (858)
+.++|||++|++.++.+++.|.+. |+.+..|||++.+.+|..+.+.++.| +|+||||+|+||+||+
T Consensus 432 ~~pvLVft~s~~~se~Ls~~L~~~-------gi~~~vLhg~~~~rEr~ii~~ag~~g--~VlIATdmAgRG~DI~l~~~V 502 (844)
T 1tf5_A 432 GQPVLVGTVAVETSELISKLLKNK-------GIPHQVLNAKNHEREAQIIEEAGQKG--AVTIATNMAGRGTDIKLGEGV 502 (844)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHTT-------TCCCEEECSSCHHHHHHHHTTTTSTT--CEEEEETTSSTTCCCCCCTTS
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEeeCCccHHHHHHHHHcCCCC--eEEEeCCccccCcCccccchh
Confidence 457999999999999999999977 89999999999999998888888877 5999999999999999
Q ss_pred ---CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 493 ---GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 493 ---~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+.|||| || .|.|...|.||+|||||.|. |.++.++
T Consensus 503 ~~~ggl~VIn--------~d----------~p~s~r~y~hr~GRTGRqG~~G~s~~~v 542 (844)
T 1tf5_A 503 KELGGLAVVG--------TE----------RHESRRIDNQLRGRSGRQGDPGITQFYL 542 (844)
T ss_dssp GGGTSEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred hhcCCcEEEE--------ec----------CCCCHHHHHhhcCccccCCCCCeEEEEe
Confidence 8999999 76 78999999999999999997 9998877
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-29 Score=310.01 Aligned_cols=298 Identities=15% Similarity=0.098 Sum_probs=203.6
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+||||||+++ .+|.... + .. ..++++++||++|+.|.+.++.+.++ .+|..
T Consensus 104 vLV~apTGSGKTlva-----~lai~~~----l---~~-----g~rvL~l~PtkaLa~Q~~~~l~~~~~-~vgll------ 159 (1010)
T 2xgj_A 104 VLVSAHTSAGKTVVA-----EYAIAQS----L---KN-----KQRVIYTSPIKALSNQKYRELLAEFG-DVGLM------ 159 (1010)
T ss_dssp EEEECCTTSCHHHHH-----HHHHHHH----H---HT-----TCEEEEEESSHHHHHHHHHHHHHHHS-CEEEE------
T ss_pred EEEECCCCCChHHHH-----HHHHHHH----h---cc-----CCeEEEECChHHHHHHHHHHHHHHhC-CEEEE------
Confidence 456799999999433 2222211 1 11 13589999999999999999988777 43333
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
. ++......++|+|+|||+|.+ +. ....+.++.+| ++.+ .+.-..+...+. ..+++.|+++
T Consensus 160 -t-Gd~~~~~~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d----~~rg~~~e~il~-----~l~~~~~il~ 228 (1010)
T 2xgj_A 160 -T-GDITINPDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRD----KERGVVWEETII-----LLPDKVRYVF 228 (1010)
T ss_dssp -C-SSCEECTTCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGC----TTTHHHHHHHHH-----HSCTTCEEEE
T ss_pred -e-CCCccCCCCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhcc----cchhHHHHHHHH-----hcCCCCeEEE
Confidence 2 222333468999999999988 33 33456677766 5555 332222222222 4567899999
Q ss_pred Eeccc-CHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCc----------cc-----hH-----------------
Q psy2470 356 SSATV-DAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPV----------VN-----YV----------------- 402 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~----------~~-----~~----------------- 402 (858)
||||+ +...|++|+.........++..+.+..|++.++..... .. +.
T Consensus 229 LSATi~n~~e~a~~l~~~~~~~~~vi~~~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 308 (1010)
T 2xgj_A 229 LSATIPNAMEFAEWICKIHSQPCHIVYTNFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISNQIGDDPNST 308 (1010)
T ss_dssp EECCCTTHHHHHHHHHHHHTSCEEEEEECCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC----------
T ss_pred EcCCCCCHHHHHHHHHhhcCCCeEEEecCCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhhhhccccccc
Confidence 99999 78889998763211123455556666676665543110 00 00
Q ss_pred -------------------HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhcc-------------------C
Q psy2470 403 -------------------QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHN-------------------Q 444 (858)
Q Consensus 403 -------------------~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~-------------------~ 444 (858)
...+..+...+.....+++|||++++..++.+++.|....- +
T Consensus 309 ~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l 388 (1010)
T 2xgj_A 309 DSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTKIFNNAIALL 388 (1010)
T ss_dssp --------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHHHHHHHHTTS
T ss_pred ccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHhc
Confidence 11122234444444456899999999999999998864200 0
Q ss_pred CC-C------------cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCC
Q psy2470 445 RE-D------------LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPN 511 (858)
Q Consensus 445 ~~-~------------~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~ 511 (858)
.+ . ....+..+||+|++.+|..+++.|++|.++|||||+++++|||+|++++||+. ...||..
T Consensus 389 ~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~----~~kfd~~ 464 (1010)
T 2xgj_A 389 PETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTS----VRKWDGQ 464 (1010)
T ss_dssp CGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESC----SEEECSS
T ss_pred chhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeC----CcccCCc
Confidence 00 0 01227889999999999999999999999999999999999999999999993 2336633
Q ss_pred CCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 512 TLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 512 ~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
. ..|.|..+|.||+|||||.|. |.||.++
T Consensus 465 ~------~rp~s~~~y~Qr~GRAGR~G~d~~G~vi~l~ 496 (1010)
T 2xgj_A 465 Q------FRWVSGGEYIQMSGRAGRRGLDDRGIVIMMI 496 (1010)
T ss_dssp C------EEECCHHHHHHHHTTBCCTTTCSSEEEEEEE
T ss_pred C------CccCCHHHHhHhhhhcccCCCCCceEEEEEE
Confidence 2 269999999999999999985 9999999
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3e-29 Score=287.38 Aligned_cols=265 Identities=16% Similarity=0.074 Sum_probs=171.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.... . ...++++++|||+||.|+++.+. +. . +++..
T Consensus 13 v~a~TGSGKT-----~~~l~~~l~~~~------~-----~~~~~lil~Ptr~La~Q~~~~l~---~~----~---v~~~~ 66 (440)
T 1yks_A 13 LDFHPGAGKT-----RRFLPQILAECA------R-----RRLRTLVLAPTRVVLSEMKEAFH---GL----D---VKFHT 66 (440)
T ss_dssp ECCCTTSSTT-----TTHHHHHHHHHH------H-----TTCCEEEEESSHHHHHHHHHHTT---TS----C---EEEES
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHH------h-----cCCeEEEEcchHHHHHHHHHHHh---cC----C---eEEec
Confidence 5699999999 444444332111 1 11368999999999999988763 11 2 44332
Q ss_pred eccceeecceeEEEeecCcccc-CCC---------ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD-SGV---------EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~-~~~---------~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
+... .++|||++++ +.. ...+.++.++ ++ + .+.++.++++..+. .++
T Consensus 67 ~~~~--------~v~Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~-~--~~~~~~~~~~~~~~------~~~ 129 (440)
T 1yks_A 67 QAFS--------AHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFL-D--PASIAARGWAAHRA------RAN 129 (440)
T ss_dssp SCCC--------CCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCC-S--HHHHHHHHHHHHHH------HTT
T ss_pred ccce--------eccCCccceeeecccchhHhhhCcccccCccEEEEECcccc-C--cchHHHHHHHHHHh------ccC
Confidence 2110 3789999887 332 1235666665 43 3 11234456666554 146
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+.|+++||||+... ...+... +.++..+.. .+........ +..+ .. ..+++|||||+++
T Consensus 130 ~~~~l~~SAT~~~~-~~~~~~~----~~~~~~~~~-------~~~~~~~~~~----~~~l----~~-~~~~~lVF~~s~~ 188 (440)
T 1yks_A 130 ESATILMTATPPGT-SDEFPHS----NGEIEDVQT-------DIPSEPWNTG----HDWI----LA-DKRPTAWFLPSIR 188 (440)
T ss_dssp SCEEEEECSSCTTC-CCSSCCC----SSCEEEEEC-------CCCSSCCSSS----CHHH----HH-CCSCEEEECSCHH
T ss_pred CceEEEEeCCCCch-hhhhhhc----CCCeeEeee-------ccChHHHHHH----HHHH----Hh-cCCCEEEEeCCHH
Confidence 78999999999432 1111110 122222111 1111111111 1111 12 2689999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec-
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF- 508 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y- 508 (858)
+++.+++.|++. ++.+..+|| ++|.++++.|++|+.+||||||++|+||||| |++|||+|+.+.+.|
T Consensus 189 ~a~~l~~~L~~~-------~~~v~~lhg----~~R~~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~ 256 (440)
T 1yks_A 189 AANVMAASLRKA-------GKSVVVLNR----KTFEREYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLV 256 (440)
T ss_dssp HHHHHHHHHHHT-------TCCEEECCS----SSCC--------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEE
T ss_pred HHHHHHHHHHHc-------CCCEEEecc----hhHHHHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeec
Confidence 999999999987 788999999 5688999999999999999999999999999 999999999888875
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCC--CceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVR--SGHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g--~G~~~rL~ 546 (858)
+...++......|.+.++|.||+|||||.| +|.||.++
T Consensus 257 ~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~g~~~g~~~~l~ 296 (440)
T 1yks_A 257 DEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYYS 296 (440)
T ss_dssp TTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEEC
T ss_pred ccccceeeccccccCHHHHHHhccccCCCCCCCceEEEEe
Confidence 444445555568999999999999999984 59999996
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.5e-29 Score=273.36 Aligned_cols=268 Identities=15% Similarity=0.175 Sum_probs=184.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+++ .+|.+. . ...+|+++|+++++.|.++++.+ ++...+.. ++...
T Consensus 36 v~~~TGsGKT~~~-----~~~~~~----------~-----~~~~liv~P~~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 91 (337)
T 2z0m_A 36 VRAKTGSGKTAAY-----AIPILE----------L-----GMKSLVVTPTRELTRQVASHIRD-IGRYMDTK---VAEVY 91 (337)
T ss_dssp EECCTTSSHHHHH-----HHHHHH----------H-----TCCEEEECSSHHHHHHHHHHHHH-HTTTSCCC---EEEEC
T ss_pred EEcCCCCcHHHHH-----HHHHHh----------h-----cCCEEEEeCCHHHHHHHHHHHHH-HhhhcCCc---EEEEE
Confidence 4699999999443 333221 0 12479999999999999988854 33333333 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCce
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLK 352 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q 352 (858)
+.... ....++|+|+|||+|++ +.. ...+.++.++ ++.+ .++...+...+. ..+...|
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~~~~-----~~~~~~~ 162 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLMFE----MGFIDDIKIILA-----QTSNRKI 162 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHTTSCCGGGCSEEEEESHHHHHH----TTCHHHHHHHHH-----HCTTCSE
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHcCCcchhhCcEEEEEChHHhhc----cccHHHHHHHHh-----hCCcccE
Confidence 22111 11347899999999998 333 2345666655 4444 333332222222 4556789
Q ss_pred EEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHH
Q psy2470 353 LIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLE 429 (858)
Q Consensus 353 ~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~ 429 (858)
+++||||++.. .+..++. ++..+.......+++..+....... .. ....+.....+++|||+++.+
T Consensus 163 ~~~~SAT~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~lvf~~~~~ 231 (337)
T 2z0m_A 163 TGLFSATIPEEIRKVVKDFIT-----NYEEIEACIGLANVEHKFVHVKDDW--RS----KVQALRENKDKGVIVFVRTRN 231 (337)
T ss_dssp EEEEESCCCHHHHHHHHHHSC-----SCEEEECSGGGGGEEEEEEECSSSS--HH----HHHHHHTCCCSSEEEECSCHH
T ss_pred EEEEeCcCCHHHHHHHHHhcC-----CceeeecccccCCceEEEEEeChHH--HH----HHHHHHhCCCCcEEEEEcCHH
Confidence 99999999543 3444554 3444443333334555444332221 11 123344556789999999999
Q ss_pred HHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceecc
Q psy2470 430 QIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFN 509 (858)
Q Consensus 430 ~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd 509 (858)
+++.+++.|+ .+..+||++++++|.++++.|++|+.+|||||+++++|+|+|++++||+ |+
T Consensus 232 ~~~~l~~~l~-----------~~~~~~~~~~~~~r~~~~~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~--------~~ 292 (337)
T 2z0m_A 232 RVAKLVRLFD-----------NAIELRGDLPQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN--------FD 292 (337)
T ss_dssp HHHHHHTTCT-----------TEEEECTTSCHHHHHHHHHHHHTTSCSEEEECHHHHTTCCCCCBSEEEE--------SS
T ss_pred HHHHHHHHhh-----------hhhhhcCCCCHHHHHHHHHHHHcCCCcEEEEcCccccCCCccCCCEEEE--------ec
Confidence 9999887765 2567899999999999999999999999999999999999999999999 65
Q ss_pred CCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 510 ~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.|.++|.||+||+||.|. |.|+.++
T Consensus 293 ----------~~~s~~~~~Q~~GR~gR~g~~g~~~~~~ 320 (337)
T 2z0m_A 293 ----------APQDLRTYIHRIGRTGRMGRKGEAITFI 320 (337)
T ss_dssp ----------CCSSHHHHHHHHTTBCGGGCCEEEEEEE
T ss_pred ----------CCCCHHHhhHhcCccccCCCCceEEEEE
Confidence 56789999999999999986 9999988
|
| >3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.8e-29 Score=286.79 Aligned_cols=275 Identities=14% Similarity=0.071 Sum_probs=175.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.... . . ....+||++|||+||.|+++++.+. +. .|.. ++...
T Consensus 41 v~apTGsGKT-----~~~l~~~~~~----~---~-----~~~~~lil~Pt~~L~~q~~~~~~~~-~~-~~~~---v~~~~ 98 (414)
T 3oiy_A 41 MVAPTGVGKT-----TFGMMTALWL----A---R-----KGKKSALVFPTVTLVKQTLERLQKL-AD-EKVK---IFGFY 98 (414)
T ss_dssp CCSCSSSSHH-----HHHHHHHHHH----H---T-----TTCCEEEEESSHHHHHHHHHHHHHH-CC-SSCC---EEECC
T ss_pred EEeCCCCCHH-----HHHHHHHHHH----h---c-----CCCEEEEEECCHHHHHHHHHHHHHH-cc-CCce---EEEEE
Confidence 5799999999 3444442221 1 1 1236899999999999999988653 33 4444 44333
Q ss_pred eccce----------eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCC-------chhhhhHHHHHHHH
Q psy2470 286 RKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGG-------QDVIGEDMKAFAEQ 342 (858)
Q Consensus 286 r~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~-------~d~ll~~lk~~~~~ 342 (858)
+..+. ....++|+|+|||+|++......+.++.+| +..+.+.+ .+|....++.+...
T Consensus 99 g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~~~~~~~~~~~i~~~ 178 (414)
T 3oiy_A 99 SSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFST 178 (414)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHHhccccccEEEEeChHhhhhccchhhhHHhhcCCcHHHHHHHHHh
Confidence 22221 112389999999999883333444555555 11110000 01111212222222
Q ss_pred hc-----ccCC--CCceEEEEeccc-CH---HHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHH
Q psy2470 343 LK-----PLKR--TQLKLIISSATV-DA---EEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIK 411 (858)
Q Consensus 343 l~-----~~~~--~~~q~il~SAT~-~~---~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~ 411 (858)
+. ...+ ++.|+++||||+ +. ..+...+.. ..+.........+...+.... ..+. +..
T Consensus 179 ~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~i~~~~~~~~---~~~~----l~~ 246 (414)
T 3oiy_A 179 IKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN-----FTVGRLVSVARNITHVRISSR---SKEK----LVE 246 (414)
T ss_dssp HHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS-----CCSSCCCCCCCSEEEEEESSC---CHHH----HHH
T ss_pred cccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc-----cCcCccccccccchheeeccC---HHHH----HHH
Confidence 11 1111 678999999994 21 133333321 010001111234455554432 2222 333
Q ss_pred HHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE-eccCCCCHHHHHHhcCCCCCCcEEEEEe----cCccc
Q psy2470 412 IHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL-PMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAE 486 (858)
Q Consensus 412 i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~-~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAe 486 (858)
++.. .++++|||+++++.++.+++.|++. ++.+. .+||+ +| + ++.|++|+.+|||| ||+++
T Consensus 247 ~l~~-~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~h~~----~r-~-~~~f~~g~~~vLvat~s~T~~~~ 312 (414)
T 3oiy_A 247 LLEI-FRDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF----EK-N-FEDFKVGKINILIGVQAYYGKLT 312 (414)
T ss_dssp HHHH-HCSSEEEEESSHHHHHHHHHHHHHT-------TCCEEESSSCH----HH-H-HHHHHTTSCSEEEEECCTTCCCC
T ss_pred HHHH-cCCCEEEEECCHHHHHHHHHHHHHc-------CCceehhhcCc----ch-H-HHHHhCCCCeEEEEecCcCchhh
Confidence 3333 2478999999999999999999987 88888 99985 34 3 89999999999999 99999
Q ss_pred ccCCCCC-eeEEEcCCCccceeccCCCCCCcceeee--cCHhhHHHhhcccCCCC-----CceEEEeh
Q psy2470 487 TSITIPG-IVYVIDPGFVKARWFNPNTLTNSLVVVP--ISKASAVQRAGRAGRVR-----SGHVYRKN 546 (858)
Q Consensus 487 rgldIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~p--is~~~~~qR~GRaGR~g-----~G~~~rL~ 546 (858)
+|+|||+ |++||+ || .| .+.++|.||+|||||.| +|.|+.++
T Consensus 313 ~GiDip~~v~~VI~--------~~----------~p~~~~~~~y~qr~GR~gR~g~~~~~~g~~i~~~ 362 (414)
T 3oiy_A 313 RGVDLPERIKYVIF--------WG----------TPSGPDVYTYIQASGRSSRILNGVLVKGVSVIFE 362 (414)
T ss_dssp CCCCCTTTCCEEEE--------ES----------CCTTTCHHHHHHHHGGGCCEETTEECCEEEEEEC
T ss_pred ccCccccccCEEEE--------EC----------CCCCCCHHHHHHHhCccccCCCCCCcceEEEEEE
Confidence 9999999 999999 66 56 78999999999999987 59999998
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.8e-29 Score=290.45 Aligned_cols=276 Identities=16% Similarity=0.143 Sum_probs=188.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++++|.+.. . ..+||++|+++|+.|..+++. .+|..+... .|...
T Consensus 45 v~apTGsGKT-----l~~~lp~l~~---------~------g~~lvi~P~~aL~~q~~~~l~-~~gi~~~~l---~~~~~ 100 (523)
T 1oyw_A 45 VVMPTGGGKS-----LCYQIPALLL---------N------GLTVVVSPLISLMKDQVDQLQ-ANGVAAACL---NSTQT 100 (523)
T ss_dssp EECSCHHHHH-----HHHHHHHHHS---------S------SEEEEECSCHHHHHHHHHHHH-HTTCCEEEE---CTTSC
T ss_pred EECCCCcHHH-----HHHHHHHHHh---------C------CCEEEECChHHHHHHHHHHHH-HcCCcEEEE---eCCCC
Confidence 4699999999 5555664431 0 136999999999999988874 456544332 11110
Q ss_pred ec------cceeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhH--HHHHHHHhcccCCC
Q psy2470 286 RK------GRMKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGED--MKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~------~~~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~--lk~~~~~l~~~~~~ 349 (858)
.. ........+|+|+||++|+. .. ......++.++ ...+ -|.||...+ +..+. ...+
T Consensus 101 ~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~--~g~~fr~~~~~l~~l~-----~~~~ 173 (523)
T 1oyw_A 101 REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLR-----QRFP 173 (523)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHH-----HHCT
T ss_pred HHHHHHHHHHHhcCCCCEEEECHHHHhChHHHHHHhhCCCCEEEEeCccccCc--CCCccHHHHHHHHHHH-----HhCC
Confidence 00 01112347999999999975 21 11122344444 2222 112232111 11222 2235
Q ss_pred CceEEEEecccCHH---HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcC
Q psy2470 350 QLKLIISSATVDAE---EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVI 426 (858)
Q Consensus 350 ~~q~il~SAT~~~~---~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~ 426 (858)
+.+++++|||.+.. .+.++++. ..+.+.+.+...|. ..|......+ ....+..++...+.+++|||++
T Consensus 174 ~~~~i~lSAT~~~~~~~~i~~~l~~----~~~~~~~~~~~r~~-l~~~v~~~~~----~~~~l~~~l~~~~~~~~IVf~~ 244 (523)
T 1oyw_A 174 TLPFMALTATADDTTRQDIVRLLGL----NDPLIQISSFDRPN-IRYMLMEKFK----PLDQLMRYVQEQRGKSGIIYCN 244 (523)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTC----CSCEEEECCCCCTT-EEEEEEECSS----HHHHHHHHHHHTTTCCEEEECS
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhCC----CCCeEEeCCCCCCc-eEEEEEeCCC----HHHHHHHHHHhcCCCcEEEEeC
Confidence 68999999999553 45555542 34555454432221 2222212222 2234555555556679999999
Q ss_pred CHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccce
Q psy2470 427 GLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKAR 506 (858)
Q Consensus 427 t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~ 506 (858)
|+++++.+++.|++. ++.+..+||+|++++|.++++.|++|+.+|||||+++++|||+|+|++||+
T Consensus 245 sr~~~e~l~~~L~~~-------g~~~~~~h~~l~~~~R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~------- 310 (523)
T 1oyw_A 245 SRAKVEDTAARLQSK-------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVH------- 310 (523)
T ss_dssp SHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEE-------
T ss_pred CHHHHHHHHHHHHHC-------CCCEEEecCCCCHHHHHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEE-------
Confidence 999999999999987 888999999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 507 WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 507 ~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+ .|.|.++|.||+|||||.|. |.|+.+|
T Consensus 311 -~~----------~p~s~~~y~Qr~GRaGR~g~~~~~~l~~ 340 (523)
T 1oyw_A 311 -FD----------IPRNIESYYQETGRAGRDGLPAEAMLFY 340 (523)
T ss_dssp -SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred -EC----------CCCCHHHHHHHhccccCCCCCceEEEEe
Confidence 66 57899999999999999995 9999999
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.3e-29 Score=284.10 Aligned_cols=272 Identities=16% Similarity=0.045 Sum_probs=181.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.... +. ..++++++|||+||.|+++.+. |. . +++..
T Consensus 7 v~a~TGsGKT-----~~~l~~~l~~~~------~~-----g~~~lvl~Pt~~La~Q~~~~~~---~~----~---v~~~~ 60 (431)
T 2v6i_A 7 LDLHPGAGKT-----RRVLPQLVREAV------KK-----RLRTVILAPTRVVASEMYEALR---GE----P---IRYMT 60 (431)
T ss_dssp EECCTTSCTT-----TTHHHHHHHHHH------HT-----TCCEEEEESSHHHHHHHHHHTT---TS----C---EEEC-
T ss_pred EEcCCCCCHH-----HHHHHHHHHHHH------hC-----CCCEEEECcHHHHHHHHHHHhC---CC----e---EEEEe
Confidence 5799999999 333333221111 11 1368999999999999887663 32 3 44443
Q ss_pred ec-cceeecceeEEEeecCcccc-CCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEe
Q psy2470 286 RK-GRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISS 357 (858)
Q Consensus 286 r~-~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~S 357 (858)
+. .....++..+.++|.|.+.+ +..+..+.++.+| ++ + ...+...+.++.+. .+++.|+++||
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~l~~vViDEaH~~-~--~~~~~~~~~l~~~~------~~~~~~~l~~S 131 (431)
T 2v6i_A 61 PAVQSERTGNEIVDFMCHSTFTMKLLQGVRVPNYNLYIMDEAHFL-D--PASVAARGYIETRV------SMGDAGAIFMT 131 (431)
T ss_dssp --------CCCSEEEEEHHHHHHHHHHTCCCCCCSEEEEESTTCC-S--HHHHHHHHHHHHHH------HTTSCEEEEEE
T ss_pred cCccccCCCCceEEEEchHHHHHHHhcCccccCCCEEEEeCCccC-C--ccHHHHHHHHHHHh------hCCCCcEEEEe
Confidence 33 22233345677888888877 5556667777766 32 3 00223344444433 24679999999
Q ss_pred cccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHH
Q psy2470 358 ATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGI 437 (858)
Q Consensus 358 AT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~ 437 (858)
||+... +..+.. .+.++..+... +....... +...+.. ..|++|||+|++++++.+++.
T Consensus 132 AT~~~~-~~~~~~----~~~~i~~~~~~-------~~~~~~~~--------~~~~l~~-~~~~~lVF~~~~~~~~~l~~~ 190 (431)
T 2v6i_A 132 ATPPGT-TEAFPP----SNSPIIDEETR-------IPDKAWNS--------GYEWITE-FDGRTVWFVHSIKQGAEIGTC 190 (431)
T ss_dssp SSCTTC-CCSSCC----CSSCCEEEECC-------CCSSCCSS--------CCHHHHS-CSSCEEEECSSHHHHHHHHHH
T ss_pred CCCCcc-hhhhcC----CCCceeecccc-------CCHHHHHH--------HHHHHHc-CCCCEEEEeCCHHHHHHHHHH
Confidence 999432 111111 12333333221 10111111 1122222 368999999999999999999
Q ss_pred HHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcc
Q psy2470 438 LKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSL 517 (858)
Q Consensus 438 L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l 517 (858)
|++. ++.+..+||+ +|.++++.|++|+.+||||||++|+||||| +.+|||+|..+.+.|| ..++...
T Consensus 191 L~~~-------~~~v~~lhg~----~r~~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d-~~~~vi~ 257 (431)
T 2v6i_A 191 LQKA-------GKKVLYLNRK----TFESEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILL-DGRVSMQ 257 (431)
T ss_dssp HHHT-------TCCEEEESTT----THHHHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEE-TTEEEEE
T ss_pred HHHc-------CCeEEEeCCc----cHHHHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceec-ccceeec
Confidence 9977 7889999997 578899999999999999999999999999 9999999999988888 5666667
Q ss_pred eeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 518 VVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 518 ~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...|.+.++|.||+|||||.|. +.|+-+|
T Consensus 258 ~~~p~~~~~~~Qr~GR~GR~g~~~~~~~~~ 287 (431)
T 2v6i_A 258 GPIAITPASAAQRRGRIGRNPEKLGDIYAY 287 (431)
T ss_dssp EEEECCHHHHHHHHTTSSCCTTCCCCEEEE
T ss_pred ccccCCHHHHHHhhhccCCCCCCCCeEEEE
Confidence 7799999999999999999985 3344333
|
| >2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-28 Score=291.69 Aligned_cols=117 Identities=21% Similarity=0.147 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHhh--CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE
Q psy2470 403 QGVVDTAIKIHES--MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~--~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv 480 (858)
..+...+...+.. ..+.++|||++|++.++.+++.|++. |+.+..|||++.+.++..+.++|++| .|+|
T Consensus 424 ~~K~~al~~~i~~~~~~gqpvLVft~sie~se~Ls~~L~~~-------gi~~~vLnak~~~rEa~iia~agr~G--~VtI 494 (853)
T 2fsf_A 424 AEKIQAIIEDIKERTAKGQPVLVGTISIEKSELVSNELTKA-------GIKHNVLNAKFHANEAAIVAQAGYPA--AVTI 494 (853)
T ss_dssp HHHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHT-------TCCCEECCTTCHHHHHHHHHTTTSTT--CEEE
T ss_pred HHHHHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEE
Confidence 3455555554422 33567999999999999999999987 89999999999999999999999998 5999
Q ss_pred ecCcccccCCCCC--------------------------------e-----eEEEcCCCccceeccCCCCCCcceeeecC
Q psy2470 481 ATNIAETSITIPG--------------------------------I-----VYVIDPGFVKARWFNPNTLTNSLVVVPIS 523 (858)
Q Consensus 481 ATdvAergldIp~--------------------------------V-----~~VId~g~~k~~~yd~~~g~~~l~~~pis 523 (858)
|||+|+||+||+. | .|||| |+ .|.|
T Consensus 495 ATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~--------te----------~pes 556 (853)
T 2fsf_A 495 ATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIG--------TE----------RHES 556 (853)
T ss_dssp EESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEE--------SS----------CCSS
T ss_pred ecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEE--------cc----------CCCC
Confidence 9999999999997 4 69999 66 7889
Q ss_pred HhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 524 KASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 524 ~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
...|.||+|||||.|. |.+..+.
T Consensus 557 ~riy~qr~GRTGRqGd~G~s~~fl 580 (853)
T 2fsf_A 557 RRIDNQLRGRSGRQGDAGSSRFYL 580 (853)
T ss_dssp HHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred HHHHHhhccccccCCCCeeEEEEe
Confidence 9999999999999997 9988776
|
| >4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B | Back alignment and structure |
|---|
Probab=99.95 E-value=9.4e-28 Score=311.33 Aligned_cols=415 Identities=12% Similarity=0.085 Sum_probs=246.5
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh---CCcCccEeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM---GCRMDFEYIS 280 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~~~g~~~~~ 280 (858)
+-+.|||||||| .++.+|.+........... ........++.++|+|.||.|+...+.+.+ |.+++..
T Consensus 98 ~lv~APTGsGKT-----lva~l~il~~l~~~~~~~~-~~~~~~~k~lyiaP~kALa~e~~~~l~~~~~~~gi~V~~~--- 168 (1724)
T 4f92_B 98 LLLCAPTGAGKT-----NVALMCMLREIGKHINMDG-TINVDDFKIIYIAPMRSLVQEMVGSFGKRLATYGITVAEL--- 168 (1724)
T ss_dssp EEEECCTTSCCH-----HHHHHHHHHHHGGGCCTTS-SCCTTSCEEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEC---
T ss_pred EEEEeCCcchHH-----HHHHHHHHHHHHhhccccc-cccCCCCEEEEECCHHHHHHHHHHHHHHHHhhCCCEEEEE---
Confidence 557899999999 3333432221111111100 011123357999999999999998886654 3343333
Q ss_pred eeEEEeccceeecceeEEEeecCccccCCCc----cCCCcccEE-----EecCCCCCch---hhhhHHHHHHHHhcccCC
Q psy2470 281 RGYMFRKGRMKILVSKIFKMSQGKPSDSGVE----PISQSYLVE-----LSILAPGGQD---VIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 281 vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~----~~L~~~~vl-----R~l~~~~~~d---~ll~~lk~~~~~l~~~~~ 348 (858)
.| ...........++|+|+||+++--+... ..++.+.+| .+++ ++ .+..++..+.... ...+
T Consensus 169 tG-d~~~~~~~~~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~----d~RG~~lE~~l~rl~~~~-~~~~ 242 (1724)
T 4f92_B 169 TG-DHQLCKEEISATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLH----DDRGPVLEALVARAIRNI-EMTQ 242 (1724)
T ss_dssp CS-SCSSCCTTGGGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGG----STTHHHHHHHHHHHHHHH-HHHT
T ss_pred EC-CCCCCccccCCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcC----CccHHHHHHHHHHHHHHH-HhCC
Confidence 22 1111112224689999999996333221 235666655 6776 33 1222222211111 1345
Q ss_pred CCceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCeecce--eEEEecCCccchH---HHHHHHHHHHH-hhCCCCCE
Q psy2470 349 TQLKLIISSATV-DAEEICQFYNISASSNATILSVKGHLYPV--SVYYSNDPVVNYV---QGVVDTAIKIH-ESMPVGDI 421 (858)
Q Consensus 349 ~~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~~~~v--~~~~~~~~~~~~~---~~~~~~l~~i~-~~~~~g~i 421 (858)
++.|+|.+|||+ |.+.+++|++..+ ......+.....|| +.++......... ......+.... .....+++
T Consensus 243 ~~~riI~LSATl~N~~dvA~wL~~~~--~~~~~~~~~~~RPvpL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 320 (1724)
T 4f92_B 243 EDVRLIGLSATLPNYEDVATFLRVDP--AKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQV 320 (1724)
T ss_dssp CCCEEEEEECSCTTHHHHHHHTTCCH--HHHEEECCGGGCSSCEEEECCEECCCCHHHHHHHHHHHHHHHHTTCCSSCCE
T ss_pred CCCcEEEEecccCCHHHHHHHhCCCC--CCCeEEECCCCccCccEEEEeccCCcchhhhhHHHHHHHHHHHHHHhcCCcE
Confidence 678999999999 8999999997311 01233444333344 4333322222111 11122222322 22346789
Q ss_pred EEEcCCHHHHHHHHHHHHHhccCCC------------------------------CcceEEEeccCCCCHHHHHHhcCCC
Q psy2470 422 LAFVIGLEQIEHIIGILKQYHNQRE------------------------------DLKLLILPMHGSLPNNEQIKVFRPT 471 (858)
Q Consensus 422 LVFl~t~~~i~~l~~~L~~~~~~~~------------------------------~~~~~v~~LHg~l~q~~r~~v~~~f 471 (858)
|||++|+++++.+++.|.+.....+ .-...+..+||+|++++|..+.+.|
T Consensus 321 LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F 400 (1724)
T 4f92_B 321 LVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLF 400 (1724)
T ss_dssp EEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHH
Confidence 9999999999999998874210000 0012367789999999999999999
Q ss_pred CCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh--
Q psy2470 472 PRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN-- 546 (858)
Q Consensus 472 ~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~-- 546 (858)
++|..+|||||+++|.|||+|.+++||.. ...||+..|. ..|+|..+|.||+|||||.|- |.+|-+.
T Consensus 401 ~~G~i~vlvaTsTLa~GVNlPa~~vVI~~----~~~~~~~~~~----~~~ls~~~~~Qm~GRAGR~g~d~~G~~ii~~~~ 472 (1724)
T 4f92_B 401 ADKHIQVLVSTATLAWGVNLPAHTVIIKG----TQVYSPEKGR----WTELGALDILQMLGRAGRPQYDTKGEGILITSH 472 (1724)
T ss_dssp HTTCCCEEEECHHHHHHSCCCBSEEEEEC----CEEEETTTTE----EEECCHHHHHHHHTTBSCTTTCSCEEEEEEEES
T ss_pred HCCCCeEEEEcchhHhhCCCCCceEEEeC----CEEecCcCCC----cccCCHHHHHHhhhhccCCCCCCccEEEEEecc
Confidence 99999999999999999999999999962 2458877662 368999999999999999883 9999887
Q ss_pred ---hhHhhhhhhhhccCCCCCCCCCCCccccCcccchhhh----------------HHHHHHHhhhHhHhHhh---hCCC
Q psy2470 547 ---FMYNRLFIHFCVSRNIPTIPNDPKDVKCDVMFHKVFF----------------SFFQYLLEAGWCYDTKL---IGIT 604 (858)
Q Consensus 547 ---~~~~~l~~~~~~~~~~p~~~~~Pei~r~~L~~~~~l~----------------~~~~~l~~~~~~l~~~~---~~~~ 604 (858)
..|..+-. . ++.+++.+. ..+. +..+||..+-...++.. .+-.
T Consensus 473 ~~~~~~~~ll~-----~--------~~pieS~l~--~~l~d~L~aeI~~g~i~~~~~a~~~l~~T~~~~r~~~~p~~y~~ 537 (1724)
T 4f92_B 473 GELQYYLSLLN-----Q--------QLPIESQMV--SKLPDMLNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGI 537 (1724)
T ss_dssp TTCCHHHHHTT-----T--------CSCCCCCTT--TTHHHHHHHHHHHTSCCBHHHHHHHHHHSHHHHHHHHCTTTTTC
T ss_pred hhHHHHHHHHc-----C--------CCcchhhcc--ccHHHHHHHHHHHhhcCCHHHHHHHHhccHHHHHhhhChhhhcc
Confidence 23344333 2 333444443 1222 33334433322111111 0000
Q ss_pred CC---cccccCCc----hHHHHHHHHHhcCCeeeeeeecCC-CCcccCccceecchhhHHHhcccCcccccc
Q psy2470 605 EP---RRISVTSL----ANRVSEELRTTLGHTVGYTIRFDD-CTTEDVTKIKYMTEGILMREMMTDPLLRKY 668 (858)
Q Consensus 605 ~~---~~~~~l~~----a~~~a~~~L~~lg~lv~y~v~~~~-~~~~~~T~i~~~~~G~lls~L~~dp~l~~~ 668 (858)
.. ...+.+.. .+..++..|.+.|.+ ..+. ......| ++|+.++++|++|...+.
T Consensus 538 ~~~~~~~d~~l~~~~~~~i~~~~~~L~~~~li-----~~d~~~~~~~~T-----~lGr~~s~~yi~~~t~~~ 599 (1724)
T 4f92_B 538 SHDDLKGDPLLDQRRLDLVHTAALMLDKNNLV-----KYDKKTGNFQVT-----ELGRIASHYYITNDTVQT 599 (1724)
T ss_dssp CHHHHHHCTTCHHHHHHHHHHHHHHHHHTTSE-----EECTTTCBEEEC-----HHHHHHHHTTCCHHHHHH
T ss_pred CccccccchHHHHHHHHHHHHHHHHHHHCCCe-----eeecCCCccccc-----hHHHHHHHhcCCHHHHHH
Confidence 00 00011111 356788889999988 4322 2223345 999999999999988877
|
| >2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=297.32 Aligned_cols=108 Identities=19% Similarity=0.186 Sum_probs=64.1
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEec--------cCCCCHHHHHHhcCCCCC-CcEEEEEecCcccc
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPM--------HGSLPNNEQIKVFRPTPR-AMRKIVIATNIAET 487 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~L--------Hg~l~q~~r~~v~~~f~~-g~~kVlvATdvAer 487 (858)
+.+++|||++++++++.+++.|+..... .++.+..+ ||+|++++|.++++.|++ |.++|||||++|++
T Consensus 397 ~~~~~IIF~~~~~~~~~l~~~L~~~~~~---~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~~vLVaT~v~~~ 473 (696)
T 2ykg_A 397 PETITILFVKTRALVDALKNWIEGNPKL---SFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDHNILIATSVADE 473 (696)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHCTTC---CSCCEEC-----------------------------CCSCSEEEESSCC
T ss_pred CCCcEEEEeCcHHHHHHHHHHHHhCCCc---cccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCccEEEEechhhc
Confidence 5689999999999999999999975111 12677777 569999999999999998 99999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||||+|++||+ || .|.+.++|.||+|| ||.++|.||.++
T Consensus 474 GiDip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-GR~~~g~~~~l~ 513 (696)
T 2ykg_A 474 GIDIAQCNLVIL--------YE----------YVGNVIKMIQTRGR-GRARGSKCFLLT 513 (696)
T ss_dssp C---CCCSEEEE--------ES----------CC--CCCC----------CCCEEEEEE
T ss_pred CCcCccCCEEEE--------eC----------CCCCHHHHHHhhcc-CcCCCceEEEEe
Confidence 999999999999 77 56777889999999 999889999999
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.7e-28 Score=293.40 Aligned_cols=266 Identities=17% Similarity=0.091 Sum_probs=176.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| .++.+|.+.... . ...+++|++|||+||.|+++++. +.. +++.
T Consensus 245 lv~apTGSGKT-----l~~ll~il~~l~------~-----~~~~~lilaPTr~La~Q~~~~l~---~~~-------i~~~ 298 (673)
T 2wv9_A 245 VLDLHPGAGKT-----RRILPQIIKDAI------Q-----KRLRTAVLAPTRVVAAEMAEALR---GLP-------VRYL 298 (673)
T ss_dssp EECCCTTTTTT-----TTHHHHHHHHHH------H-----TTCCEEEEESSHHHHHHHHHHTT---TSC-------CEEC
T ss_pred EEEeCCCCCHH-----HHHHHHHHHHHH------h-----CCCcEEEEccHHHHHHHHHHHHh---cCC-------eeee
Confidence 35799999999 444444332111 1 11368999999999999988763 111 3332
Q ss_pred EeccceeecceeEEEeecCcccc-C---------CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-S---------GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~---------~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
.+... .++|||++++ + ..+..+.++.++ ++ + ...+..+++++.+. .+
T Consensus 299 ~~~l~--------~v~tp~~ll~~l~~~~l~~~l~~~~~l~~l~lvViDEaH~~-~--~~~~~~~~~l~~~~------~~ 361 (673)
T 2wv9_A 299 TPAVQ--------REHSGNEIVDVMCHATLTHRLMSPLRVPNYNLFVMDEAHFT-D--PASIAARGYIATRV------EA 361 (673)
T ss_dssp CC-----------CCCCSCCCEEEEEHHHHHHHHHSSSCCCCCSEEEEESTTCC-C--HHHHHHHHHHHHHH------HT
T ss_pred ccccc--------ccCCHHHHHHHHHhhhhHHHHhcccccccceEEEEeCCccc-C--ccHHHHHHHHHHhc------cc
Confidence 22111 1567777665 2 223356777766 33 2 00234466666554 13
Q ss_pred CCceEEEEecccCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 349 TQLKLIISSATVDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 349 ~~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
++.|+++||||+... +.++.. .+.++..+... +........ +. .+.. ..+++||||+++
T Consensus 362 ~~~~vl~~SAT~~~~-i~~~~~----~~~~i~~v~~~-------~~~~~~~~~----l~----~l~~-~~~~~lVF~~s~ 420 (673)
T 2wv9_A 362 GEAAAIFMTATPPGT-SDPFPD----TNSPVHDVSSE-------IPDRAWSSG----FE----WITD-YAGKTVWFVASV 420 (673)
T ss_dssp TSCEEEEECSSCTTC-CCSSCC----CSSCEEEEECC-------CCSSCCSSC----CH----HHHS-CCSCEEEECSSH
T ss_pred cCCcEEEEcCCCChh-hhhhcc----cCCceEEEeee-------cCHHHHHHH----HH----HHHh-CCCCEEEEECCH
Confidence 678999999999432 111111 12333333221 001111111 11 1122 478999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee-
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW- 507 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~- 507 (858)
++++.+++.|++. ++.+..+|| ++|.++++.|++|+.+||||||++|+||||| |++|||+|....+.
T Consensus 421 ~~~e~la~~L~~~-------g~~v~~lHg----~eR~~v~~~F~~g~~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~v 488 (673)
T 2wv9_A 421 KMSNEIAQCLQRA-------GKRVIQLNR----KSYDTEYPKCKNGDWDFVITTDISEMGANFG-ASRVIDCRKSVKPTI 488 (673)
T ss_dssp HHHHHHHHHHHTT-------TCCEEEECS----SSHHHHGGGGGTCCCSEEEECGGGGTTCCCC-CSEEEECCEECCEEE
T ss_pred HHHHHHHHHHHhC-------CCeEEEeCh----HHHHHHHHHHHCCCceEEEECchhhcceeeC-CcEEEECCCccccee
Confidence 9999999999976 788999999 4889999999999999999999999999999 99999999776654
Q ss_pred -ccCCCCCCcceeeecCHhhHHHhhcccCCC-C-CceEEEeh
Q psy2470 508 -FNPNTLTNSLVVVPISKASAVQRAGRAGRV-R-SGHVYRKN 546 (858)
Q Consensus 508 -yd~~~g~~~l~~~pis~~~~~qR~GRaGR~-g-~G~~~rL~ 546 (858)
||...++..+...|.|.++|.||+|||||. | +|.||.++
T Consensus 489 i~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~~g~~G~ai~l~ 530 (673)
T 2wv9_A 489 LDEGEGRVILSVPSAITSASAAQRRGRVGRNPSQIGDEYHYG 530 (673)
T ss_dssp ECSTTCEEEECCSEECCHHHHHHHHTTSSCCSSCCCEEEEEC
T ss_pred eecccccceecccCCCCHHHHHHHhhccCCCCCCCCEEEEEE
Confidence 565444444445899999999999999999 4 49999986
|
| >4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=2.7e-27 Score=278.27 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=54.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++..... ...|.....+||+|++++|.++++.|++ |..+||||||++++||
T Consensus 388 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gi 467 (556)
T 4a2p_A 388 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 467 (556)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC------
T ss_pred CCCceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCC
Confidence 557899999999999999999997531110 0124556677899999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-+...|+||+|| ||.++|.||.|+
T Consensus 468 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~ 505 (556)
T 4a2p_A 468 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 505 (556)
T ss_dssp -----CEEEE--------ET----------CCSCHHHHHHC---------CCEEEEE
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 9999999999 87 67899999999999 999889999999
|
| >1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.2e-27 Score=280.18 Aligned_cols=102 Identities=19% Similarity=0.145 Sum_probs=93.3
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCe---
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGI--- 494 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V--- 494 (858)
+.++|||++|++.++.+++.|++. |+.+..|||+..+.++..+.+.|++| +|+||||+|+||+||+.+
T Consensus 460 gqpvLVft~Sie~sE~Ls~~L~~~-------Gi~~~vLnak~~~rEa~iia~agr~G--~VtIATnmAgRGtDI~l~~~~ 530 (922)
T 1nkt_A 460 GQPVLIGTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRG--GVTVATNMAGRGTDIVLGGNV 530 (922)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHT-------TCCCEEECSSCHHHHHHHHHTTTSTT--CEEEEETTCSTTCCCCTTCCH
T ss_pred CCcEEEEECCHHHHHHHHHHHHHC-------CCCEEEecCChhHHHHHHHHhcCCCC--eEEEecchhhcCccccCCCCH
Confidence 457999999999999999999987 89999999999999998888999988 599999999999999975
Q ss_pred -------------------------------------------------eEEEcCCCccceeccCCCCCCcceeeecCHh
Q psy2470 495 -------------------------------------------------VYVIDPGFVKARWFNPNTLTNSLVVVPISKA 525 (858)
Q Consensus 495 -------------------------------------------------~~VId~g~~k~~~yd~~~g~~~l~~~pis~~ 525 (858)
.|||| |+ .|.|+.
T Consensus 531 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~--------te----------~pes~r 592 (922)
T 1nkt_A 531 DFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLG--------TE----------RHESRR 592 (922)
T ss_dssp HHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEE--------CS----------CCSSHH
T ss_pred HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEe--------cc----------CCCCHH
Confidence 69999 66 788999
Q ss_pred hHHHhhcccCCCCC-ceEEEeh
Q psy2470 526 SAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 526 ~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|.||+|||||.|. |.+..+.
T Consensus 593 iy~qr~GRTGRqGdpG~s~ffl 614 (922)
T 1nkt_A 593 IDNQLRGRSGRQGDPGESRFYL 614 (922)
T ss_dssp HHHHHHHTSSGGGCCEEEEEEE
T ss_pred HHHHHhcccccCCCCeeEEEEe
Confidence 99999999999997 9988776
|
| >3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.3e-26 Score=269.95 Aligned_cols=112 Identities=18% Similarity=0.150 Sum_probs=74.0
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|+...... ...|.....+||+|++++|.++++.|++ |..+||||||++++||
T Consensus 387 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~Gl 466 (555)
T 3tbk_A 387 KPETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGI 466 (555)
T ss_dssp CTTCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCE
T ss_pred CCCceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCC
Confidence 456899999999999999999998642100 0113455566789999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-+..+|+||+|| ||...|.||.|+
T Consensus 467 Dlp~v~~VI~--------~d----------~p~s~~~~~Qr~GR-gR~~~g~~~~l~ 504 (555)
T 3tbk_A 467 DIAECNLVIL--------YE----------YVGNVIKMIQTRGR-GRARDSKCFLLT 504 (555)
T ss_dssp ETTSCSEEEE--------ES----------CCSSCCCEECSSCC-CTTTSCEEEEEE
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHhcCc-CcCCCceEEEEE
Confidence 9999999999 77 56677788899999 999889999999
|
| >4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.6e-27 Score=297.31 Aligned_cols=252 Identities=13% Similarity=0.047 Sum_probs=156.5
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+|||||| .++.+|... .+ . ...++||++|||+||.|+++++.+ ++ ..+.. ++..
T Consensus 97 lv~ApTGSGKT-----l~~l~~il~-~~------~-----~~~~~Lil~PtreLa~Q~~~~l~~-l~-~~~i~---v~~l 154 (1104)
T 4ddu_A 97 TMVAPTGVGKT-----TFGMMTALW-LA------R-----KGKKSALVFPTVTLVKQTLERLQK-LA-DEKVK---IFGF 154 (1104)
T ss_dssp EECCSTTCCHH-----HHHHHHHHH-HH------T-----TTCCEEEEESSHHHHHHHHHHHHT-TS-CTTSC---EEEE
T ss_pred EEEeCCCCcHH-----HHHHHHHHH-HH------h-----cCCeEEEEechHHHHHHHHHHHHH-hh-CCCCe---EEEE
Confidence 35799999999 333333221 11 1 123589999999999999998865 55 44545 5544
Q ss_pred Eeccce---------ee-cceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhh---hhH----HHHHHH
Q psy2470 285 FRKGRM---------KI-LVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVI---GED----MKAFAE 341 (858)
Q Consensus 285 vr~~~~---------~~-~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~l---l~~----lk~~~~ 341 (858)
.++.+. .. ..++|+|+|||+|++......+.++.+| .......+.|-+ +|+ ++.+..
T Consensus 155 ~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~~gf~~~~i~~il~ 234 (1104)
T 4ddu_A 155 YSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREKLSQKRFDFVFVDDVDAVLKASRNIDTLLMMVGIPEEIIRKAFS 234 (1104)
T ss_dssp CTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHTSSCCHHHHHHHHH
T ss_pred eCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHhhcccCcCEEEEeCCCccccccccchhhhHhcCCCHHHHHHHHH
Confidence 443332 11 2389999999999884333445555555 111100000222 222 222221
Q ss_pred Hhc-----ccCC--CCceEEEEecccCH---H-HHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHH
Q psy2470 342 QLK-----PLKR--TQLKLIISSATVDA---E-EICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAI 410 (858)
Q Consensus 342 ~l~-----~~~~--~~~q~il~SAT~~~---~-~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~ 410 (858)
.+. ...+ ++.|+++||||+.. . .+...+. ...+.........+...|... +.... +.
T Consensus 235 ~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l-----~i~v~~~~~~~~~i~~~~~~~---~k~~~----L~ 302 (1104)
T 4ddu_A 235 TIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLL-----NFTVGRLVSVARNITHVRISS---RSKEK----LV 302 (1104)
T ss_dssp HHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHT-----CCCCCBCCCCCCCEEEEEESC---CCHHH----HH
T ss_pred hcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcce-----eEEeccCCCCcCCceeEEEec---CHHHH----HH
Confidence 111 0111 67899999999522 1 2223222 111111111123455555543 22222 23
Q ss_pred HHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEE-eccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcc
Q psy2470 411 KIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLIL-PMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIA 485 (858)
Q Consensus 411 ~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~-~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvA 485 (858)
+++.. .++++||||++++.++.+++.|+.. ++.+. .+||+ |.+ ++.|++|+.+|||| ||++
T Consensus 303 ~ll~~-~~~~~LVF~~s~~~a~~l~~~L~~~-------g~~~~~~lhg~-----rr~-l~~F~~G~~~VLVatas~Tdvl 368 (1104)
T 4ddu_A 303 ELLEI-FRDGILIFAQTEEEGKELYEYLKRF-------KFNVGETWSEF-----EKN-FEDFKVGKINILIGVQAYYGKL 368 (1104)
T ss_dssp HHHHH-HCSSEEEEESSSHHHHHHHHHHHHT-------TCCEEESSSSH-----HHH-HHHHHHTSCSEEEEETTTHHHH
T ss_pred HHHHh-cCCCEEEEECcHHHHHHHHHHHHhC-------CCCeeeEecCc-----HHH-HHHHHCCCCCEEEEecCCCCee
Confidence 33333 2489999999999999999999987 88898 99992 555 99999999999999 9999
Q ss_pred cccCCCCC-eeEEEcCCCcc
Q psy2470 486 ETSITIPG-IVYVIDPGFVK 504 (858)
Q Consensus 486 ergldIp~-V~~VId~g~~k 504 (858)
+||||||+ |++|||+|+|+
T Consensus 369 arGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 369 TRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp CCSCCCTTTCCEEEEESCCE
T ss_pred EecCcCCCCCCEEEEECCCC
Confidence 99999999 99999999998
|
| >4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.5e-26 Score=279.25 Aligned_cols=112 Identities=15% Similarity=0.113 Sum_probs=60.9
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCC-----CCcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQR-----EDLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-----~~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++..... ...|..+..+||+|++++|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GI 708 (797)
T 4a2q_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (797)
T ss_dssp CSSCCEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCC
Confidence 556899999999999999999998631110 0125566778999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-|...|+||+|| ||..+|.||+|+
T Consensus 709 Dlp~v~~VI~--------yd----------~p~s~~~~iQr~GR-GR~~~g~~i~l~ 746 (797)
T 4a2q_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 746 (797)
T ss_dssp --CCCSEEEE--------ES----------CCSCHHHHHTC--------CCCEEEEE
T ss_pred CchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCceEEEEE
Confidence 9999999999 87 67889999999999 999889999999
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.92 E-value=4.4e-26 Score=261.56 Aligned_cols=106 Identities=23% Similarity=0.305 Sum_probs=97.2
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC--------CCCHHHHHHhcCCCCCCcEEEEEecCcccc
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG--------SLPNNEQIKVFRPTPRAMRKIVIATNIAET 487 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg--------~l~q~~r~~v~~~f~~g~~kVlvATdvAer 487 (858)
.+.+++|||+++.+.++.+++.|+.. ++.+..+|| ++++++|.++++.|++|..+|||||+++++
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~ 431 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD-------GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEE 431 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT-------TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGG
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHc-------CCCcEEEeccccccccccCCHHHHHHHHHHHhcCCceEEEECCcccc
Confidence 56789999999999999999999987 788999999 999999999999999999999999999999
Q ss_pred cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 488 SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 488 gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||+|++++||+ || .|-+.+.|.||+||+||.|+|.||+|+
T Consensus 432 Gldl~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~~R~g~g~~~~l~ 472 (494)
T 1wp9_A 432 GLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILM 472 (494)
T ss_dssp GGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEE
T ss_pred CCCchhCCEEEE--------eC----------CCCCHHHHHHHHhhccCCCCceEEEEE
Confidence 999999999999 66 567888999999999999999999999
|
| >1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-26 Score=291.04 Aligned_cols=247 Identities=11% Similarity=-0.051 Sum_probs=147.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh---CC----cCccEe
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM---GC----RMDFEY 278 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~---g~----~~g~~~ 278 (858)
+.|+|||||| + +.+|.+..... ...++||++|||+||.|+++++.+.. +. .++..+
T Consensus 76 v~apTGSGKT-----l-~~lp~l~~~~~-----------~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~~~~v~~~~ 138 (1054)
T 1gku_B 76 ATAPTGVGKT-----S-FGLAMSLFLAL-----------KGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENLIGYYH 138 (1054)
T ss_dssp CCCCBTSCSH-----H-HHHHHHHHHHT-----------TSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGSEEECC
T ss_pred EEcCCCCCHH-----H-HHHHHHHHHhh-----------cCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCccceEEEEe
Confidence 4699999999 4 55554442211 12368999999999999988775433 33 333331
Q ss_pred eeeeEEEe--ccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhc------
Q psy2470 279 ISRGYMFR--KGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLK------ 344 (858)
Q Consensus 279 ~~vG~~vr--~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~------ 344 (858)
|+.....+ ....... ++|+|+|||+|++.... |+++.++ ++++ . ...+...+. .+.
T Consensus 139 Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~--L~~l~~lViDEah~~l~----~--~~~~~~i~~-~lgf~~~~~ 208 (1054)
T 1gku_B 139 GRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE--LGHFDFIFVDDVDAILK----A--SKNVDKLLH-LLGFHYDLK 208 (1054)
T ss_dssp SSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT--SCCCSEEEESCHHHHHT----S--THHHHHHHH-HTTEEEETT
T ss_pred CCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH--hccCCEEEEeChhhhhh----c--cccHHHHHH-HhCcchhhh
Confidence 11111000 0111123 89999999999993333 5666655 4444 1 111111111 110
Q ss_pred -ccCCCCceEEEEecccCH-HHHHHHhhcccCCCCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCC
Q psy2470 345 -PLKRTQLKLIISSATVDA-EEICQFYNISASSNATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 345 -~~~~~~~q~il~SAT~~~-~~~~~~~~~~~~~~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g 419 (858)
...++..|+++||||+.. ..+...+.. ++..+.+.... .++.+.+...... ..+..++... .+
T Consensus 209 ~~~~~~~~q~~l~SAT~t~~~~~~~~~~~----~~~~i~v~~~~~~~~~i~~~~~~~~k~-------~~L~~ll~~~-~~ 276 (1054)
T 1gku_B 209 TKSWVGEARGCLMVSTATAKKGKKAELFR----QLLNFDIGSSRITVRNVEDVAVNDESI-------STLSSILEKL-GT 276 (1054)
T ss_dssp TTEEEECCSSEEEECCCCSCCCTTHHHHH----HHHCCCCSCCEECCCCEEEEEESCCCT-------TTTHHHHTTS-CS
T ss_pred hhhcccCCceEEEEecCCCchhHHHHHhh----cceEEEccCcccCcCCceEEEechhHH-------HHHHHHHhhc-CC
Confidence 012356789999999932 322222221 11122222222 2355555532222 2233444433 57
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe----cCcccccCCCCCe-
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA----TNIAETSITIPGI- 494 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA----TdvAergldIp~V- 494 (858)
++||||+++++++.+++.|+.. +.+..+||++. ++++.|++|+.+|||| ||++++|||||+|
T Consensus 277 ~~LVF~~t~~~a~~l~~~L~~~--------~~v~~lhg~~~-----~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI 343 (1054)
T 1gku_B 277 GGIIYARTGEEAEEIYESLKNK--------FRIGIVTATKK-----GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERI 343 (1054)
T ss_dssp CEEEEESSHHHHHHHHHTTTTS--------SCEEECTTSSS-----HHHHHHHHTSCSEEEEECC------CCSCCTTTC
T ss_pred CEEEEEcCHHHHHHHHHHHhhc--------cCeeEEeccHH-----HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcc
Confidence 8999999999999999988642 56899999983 6677899999999999 9999999999995
Q ss_pred eEEEcCCCcc
Q psy2470 495 VYVIDPGFVK 504 (858)
Q Consensus 495 ~~VId~g~~k 504 (858)
++|||+|+|+
T Consensus 344 ~~VI~~~~P~ 353 (1054)
T 1gku_B 344 RFAVFVGCPS 353 (1054)
T ss_dssp CEEEEESCCE
T ss_pred cEEEEeCCCc
Confidence 9999999984
|
| >4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos} | Back alignment and structure |
|---|
Probab=99.92 E-value=7e-25 Score=272.85 Aligned_cols=112 Identities=15% Similarity=0.111 Sum_probs=61.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCC-----CcceEEEeccCCCCHHHHHHhcCCCCC-CcEEEEEecCcccccC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQRE-----DLKLLILPMHGSLPNNEQIKVFRPTPR-AMRKIVIATNIAETSI 489 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~-----~~~~~v~~LHg~l~q~~r~~v~~~f~~-g~~kVlvATdvAergl 489 (858)
.+.+++|||+++++.++.+++.|++.....+ ..|..+..+||+|++.+|.++++.|++ |..+|||||+++++||
T Consensus 629 ~~~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGI 708 (936)
T 4a2w_A 629 NPQTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGI 708 (936)
T ss_dssp CTTCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC-----
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCC
Confidence 3468999999999999999999986421110 125556677999999999999999999 9999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||+|++||+ || .|-|..+|+||+|| ||.+.|.||.|+
T Consensus 709 Dlp~v~~VI~--------yD----------~p~s~~~~iQr~GR-GR~~~g~vi~Li 746 (936)
T 4a2w_A 709 DIVQCNLVVL--------YE----------YSGNVTKMIQVRGR-GRAAGSKCILVT 746 (936)
T ss_dssp -CCCCSEEEE--------ES----------CCSCSHHHHCC--------CCCEEEEE
T ss_pred cchhCCEEEE--------eC----------CCCCHHHHHHhcCC-CCCCCCEEEEEE
Confidence 9999999999 87 57788999999999 999889999998
|
| >4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=6.5e-26 Score=274.75 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=88.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCC--------CCHHHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGS--------LPNNEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~--------l~q~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
.+++|||+++++.++.+++.|+....+. ..|+.+..+||+ |++++|.++++.|++|..+|||||+++++||
T Consensus 400 ~~~~IVF~~s~~~~~~l~~~L~~~~~l~-~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~~~VLVaT~~~~~GI 478 (699)
T 4gl2_A 400 SARGIIFTKTRQSAYALSQWITENEKFA-EVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGL 478 (699)
T ss_dssp CCCEEEECSCHHHHHHHHHHHHSSCSCC------CEECCCSCCCTTCCCCCHHHHHHHHHHHCC---CCSEEECSCCTTS
T ss_pred CCcEEEEECcHHHHHHHHHHHHhCcccc-ccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCCCcEEEEccccccCC
Confidence 6899999999999999999998542111 237899999999 9999999999999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+|+|++||+ || .|-|.++|.||+|||||.| .++.++
T Consensus 479 Dip~v~~VI~--------~d----------~p~s~~~~~Qr~GRArr~g--~~~~l~ 515 (699)
T 4gl2_A 479 DIKECNIVIR--------YG----------LVTNEIAMVQARGRARADE--STYVLV 515 (699)
T ss_dssp CCCSCCCCEE--------ES----------CCCCHHHHHHHHTTSCSSS--CEEEEE
T ss_pred ccccCCEEEE--------eC----------CCCCHHHHHHHcCCCCCCC--ceEEEE
Confidence 9999999999 87 6788999999999988765 444444
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=8.1e-25 Score=276.31 Aligned_cols=275 Identities=14% Similarity=0.088 Sum_probs=185.8
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||.+++++|+... .. | .+++|++||++||.|.++++.+.++ ..+.. ++..
T Consensus 628 ll~~~TGsGKT~val~aa~~~~------------~~--g---~~vlvlvPt~~La~Q~~~~~~~~~~-~~~i~---v~~l 686 (1151)
T 2eyq_A 628 LVCGDVGFGKTEVAMRAAFLAV------------DN--H---KQVAVLVPTTLLAQQHYDNFRDRFA-NWPVR---IEMI 686 (1151)
T ss_dssp EEECCCCTTTHHHHHHHHHHHH------------TT--T---CEEEEECSSHHHHHHHHHHHHHHST-TTTCC---EEEE
T ss_pred EEECCCCCCHHHHHHHHHHHHH------------Hh--C---CeEEEEechHHHHHHHHHHHHHHhh-cCCCe---EEEE
Confidence 4568999999977777666532 11 1 2689999999999999999876654 22333 4433
Q ss_pred Eecccee----------ecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCC
Q psy2470 285 FRKGRMK----------ILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRT 349 (858)
Q Consensus 285 vr~~~~~----------~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~ 349 (858)
.++.... ....+|+|+||+.|.. +..+.++.+| ..+. ....+.+. ..++
T Consensus 687 ~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~---~~~~~~l~lvIiDEaH~~g--------~~~~~~l~-----~l~~ 750 (1151)
T 2eyq_A 687 SRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLLIVDEEHRFG--------VRHKERIK-----AMRA 750 (1151)
T ss_dssp STTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEEEEESGGGSC--------HHHHHHHH-----HHHT
T ss_pred eCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhC---CccccccceEEEechHhcC--------hHHHHHHH-----HhcC
Confidence 3322211 1247999999987744 2334555544 1222 22222222 2245
Q ss_pred CceEEEEecccCHHHHHHHhhcccCCCCcEEEe-cCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCH
Q psy2470 350 QLKLIISSATVDAEEICQFYNISASSNATILSV-KGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGL 428 (858)
Q Consensus 350 ~~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v-~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~ 428 (858)
+.++++||||+....+...+... .+..++.. +....++..++..... ......+...+ ..+++++||+++.
T Consensus 751 ~~~vl~lSATp~p~~l~~~~~~~--~~~~~i~~~~~~r~~i~~~~~~~~~----~~i~~~il~~l--~~g~qvlvf~~~v 822 (1151)
T 2eyq_A 751 NVDILTLTATPIPRTLNMAMSGM--RDLSIIATPPARRLAVKTFVREYDS----MVVREAILREI--LRGGQVYYLYNDV 822 (1151)
T ss_dssp TSEEEEEESSCCCHHHHHHHTTT--SEEEECCCCCCBCBCEEEEEEECCH----HHHHHHHHHHH--TTTCEEEEECCCS
T ss_pred CCCEEEEcCCCChhhHHHHHhcC--CCceEEecCCCCccccEEEEecCCH----HHHHHHHHHHH--hcCCeEEEEECCH
Confidence 78999999998655554433310 01112211 1223455555443221 12222233222 2468999999999
Q ss_pred HHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceec
Q psy2470 429 EQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWF 508 (858)
Q Consensus 429 ~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~y 508 (858)
++++.+++.|++. .+++.+..+||+|++++|.++++.|++|+.+|||||+++++|||||++++||. +
T Consensus 823 ~~~~~l~~~L~~~-----~p~~~v~~lhg~~~~~eR~~il~~F~~g~~~VLVaT~v~e~GiDip~v~~VIi--------~ 889 (1151)
T 2eyq_A 823 ENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIII--------E 889 (1151)
T ss_dssp SCHHHHHHHHHHH-----CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEEEEE--------T
T ss_pred HHHHHHHHHHHHh-----CCCCeEEEEeCCCCHHHHHHHHHHHHcCCCcEEEECCcceeeecccCCcEEEE--------e
Confidence 9999999999976 24788999999999999999999999999999999999999999999999997 4
Q ss_pred cCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 509 NPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 509 d~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++. +-+.++|.||+||+||.|. |.||.++
T Consensus 890 ~~~---------~~~l~~l~Qr~GRvgR~g~~g~~~ll~ 919 (1151)
T 2eyq_A 890 RAD---------HFGLAQLHQLRGRVGRSHHQAYAWLLT 919 (1151)
T ss_dssp TTT---------SSCHHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred CCC---------CCCHHHHHHHHhccCcCCCceEEEEEE
Confidence 421 2345789999999999986 9999988
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.91 E-value=7.3e-26 Score=273.85 Aligned_cols=279 Identities=14% Similarity=0.069 Sum_probs=174.3
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeee
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRG 282 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG 282 (858)
..-+.|+||||||++++.+++.. . +. ..++++++||++||.|.++++.+.++ ..|.. ++
T Consensus 391 ~~Ll~a~TGSGKTlvall~il~~-----l-------~~-----g~qvlvlaPtr~La~Q~~~~l~~~~~-~~gi~---v~ 449 (780)
T 1gm5_A 391 NRLLQGDVGSGKTVVAQLAILDN-----Y-------EA-----GFQTAFMVPTSILAIQHYRRTVESFS-KFNIH---VA 449 (780)
T ss_dssp CCEEECCSSSSHHHHHHHHHHHH-----H-------HH-----TSCEEEECSCHHHHHHHHHHHHHHHT-CSSCC---EE
T ss_pred cEEEEcCCCCCHHHHHHHHHHHH-----H-------Hc-----CCeEEEEeCcHHHHHHHHHHHHHHhh-hcCce---EE
Confidence 34567999999994444433221 1 11 13689999999999999998876552 22333 33
Q ss_pred EEEeccce----------eecceeEEEeecCccccCCCccCCCcccEE--EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 283 YMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVE--LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 283 ~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl--R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
...+.... ....++|+|+|||++.+ +..+.++.++ --.+ . ++.... ..+. ....+
T Consensus 450 ~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~---~~~~~~l~lVVIDEaH-----r--~g~~qr--~~l~-~~~~~ 516 (780)
T 1gm5_A 450 LLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIIDEQH-----R--FGVKQR--EALM-NKGKM 516 (780)
T ss_dssp ECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEESCC-----C--C-------CCCC-SSSSC
T ss_pred EEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh---hhhccCCceEEecccc-----h--hhHHHH--HHHH-HhCCC
Confidence 22222111 11348999999998865 2234455444 1111 0 111110 0111 22346
Q ss_pred ceEEEEecccCHHHHHHHhhcccCCCCcEEEe---cCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCC
Q psy2470 351 LKLIISSATVDAEEICQFYNISASSNATILSV---KGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIG 427 (858)
Q Consensus 351 ~q~il~SAT~~~~~~~~~~~~~~~~~~~~i~v---~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t 427 (858)
.|+++||||...+.++..+.. +..+..+ +....|+..++.... ........+.+.. ...++++||||+
T Consensus 517 ~~vL~mSATp~p~tl~~~~~g----~~~~s~i~~~p~~r~~i~~~~~~~~---~~~~l~~~i~~~l--~~g~qvlVf~~~ 587 (780)
T 1gm5_A 517 VDTLVMSATPIPRSMALAFYG----DLDVTVIDEMPPGRKEVQTMLVPMD---RVNEVYEFVRQEV--MRGGQAFIVYPL 587 (780)
T ss_dssp CCEEEEESSCCCHHHHHHHTC----CSSCEEECCCCSSCCCCEECCCCSS---THHHHHHHHHHHT--TTSCCBCCBCCC
T ss_pred CCEEEEeCCCCHHHHHHHHhC----CcceeeeeccCCCCcceEEEEeccc---hHHHHHHHHHHHH--hcCCcEEEEecc
Confidence 899999999966666543321 2222222 222345554443322 2223333333322 236789999997
Q ss_pred HHH--------HHHHHHHHHH-hccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEE
Q psy2470 428 LEQ--------IEHIIGILKQ-YHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVI 498 (858)
Q Consensus 428 ~~~--------i~~l~~~L~~-~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VI 498 (858)
.++ ++.+++.|.+ . .+++.+..+||+|++++|.++++.|++|+.+|||||+++|+|||||++++||
T Consensus 588 ie~se~l~~~~a~~l~~~L~~~~-----~~~~~v~~lHG~m~~~eR~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VI 662 (780)
T 1gm5_A 588 IEESDKLNVKSAVEMYEYLSKEV-----FPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMV 662 (780)
T ss_dssp C--------CHHHHHHHSGGGSC-----C---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHhhh-----cCCCcEEEEeCCCCHHHHHHHHHHHHCCCCeEEEECCCCCccccCCCCCEEE
Confidence 654 5556665554 2 2378899999999999999999999999999999999999999999999999
Q ss_pred cCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 499 DPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 499 d~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+ ||+.. .+.+++.||+||+||.|. |.||.++
T Consensus 663 i--------~d~~r---------~~l~~l~Qr~GRaGR~g~~g~~ill~ 694 (780)
T 1gm5_A 663 I--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVV 694 (780)
T ss_dssp B--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred E--------eCCCC---------CCHHHHHHHhcccCcCCCCCEEEEEE
Confidence 9 55321 245678899999999886 9999988
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-24 Score=219.31 Aligned_cols=118 Identities=20% Similarity=0.325 Sum_probs=108.2
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.+...+.+++...+++++|||++++++++.+++.|.+. ++.+.++||+|++++|.++++.|++|.++||||||
T Consensus 17 ~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~lhg~~~~~~r~~~~~~f~~g~~~vlvaT~ 89 (212)
T 3eaq_A 17 GRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDLSQGERERVLGAFRQGEVRVLVATD 89 (212)
T ss_dssp SHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHH-------TCCEEEECSSSCHHHHHHHHHHHHSSSCCEEEECT
T ss_pred HHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHHHHHHCCCCeEEEecC
Confidence 35566677776667899999999999999999999987 88999999999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 484 IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 484 vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|++|+|||+|++||| || .|.+.++|.||+|||||.|. |.||.++
T Consensus 90 ~~~~Gidi~~v~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~l~ 135 (212)
T 3eaq_A 90 VAARGLDIPQVDLVVH--------YR----------LPDRAEAYQHRSGRTGRAGRGGRVVLLY 135 (212)
T ss_dssp TTTCSSSCCCBSEEEE--------SS----------CCSSHHHHHHHHTTBCCCC--BEEEEEE
T ss_pred hhhcCCCCccCcEEEE--------CC----------CCcCHHHHHHHhcccCCCCCCCeEEEEE
Confidence 9999999999999999 65 57889999999999999985 9999999
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-23 Score=242.63 Aligned_cols=276 Identities=9% Similarity=-0.000 Sum_probs=172.6
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
-+.|+||||||++++.++...- ..+ + .++||++||++|+.|..+++ +.++...+.. ++..
T Consensus 132 ll~~~tGsGKT~~~~~~~~~~~------------~~~--~--~~vlvl~P~~~L~~Q~~~~~-~~~~~~~~~~---v~~~ 191 (510)
T 2oca_A 132 ILNLPTSAGRSLIQALLARYYL------------ENY--E--GKILIIVPTTALTTQMADDF-VDYRLFSHAM---IKKI 191 (510)
T ss_dssp EEECCSTTTHHHHHHHHHHHHH------------HHC--S--SEEEEEESSHHHHHHHHHHH-HHTTSSCGGG---EEEC
T ss_pred EEEeCCCCCHHHHHHHHHHHHH------------hCC--C--CeEEEEECcHHHHHHHHHHH-HHhhcCCccc---eEEE
Confidence 4579999999955554433211 011 1 25899999999999999988 4444333333 3322
Q ss_pred Eeccce---eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 285 FRKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 285 vr~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
.++... .....+|+|+||+.|.+. ....+.++.+| +... ..+ ..+. ...++..++++
T Consensus 192 ~~~~~~~~~~~~~~~I~i~T~~~l~~~-~~~~~~~~~liIiDE~H~~~~--------~~~-~~il----~~~~~~~~~l~ 257 (510)
T 2oca_A 192 GGGASKDDKYKNDAPVVVGTWQTVVKQ-PKEWFSQFGMMMNDECHLATG--------KSI-SSII----SGLNNCMFKFG 257 (510)
T ss_dssp GGGCCTTGGGCTTCSEEEEEHHHHTTS-CGGGGGGEEEEEEETGGGCCH--------HHH-HHHG----GGCTTCCEEEE
T ss_pred ecCCccccccccCCcEEEEeHHHHhhc-hhhhhhcCCEEEEECCcCCCc--------ccH-HHHH----HhcccCcEEEE
Confidence 222221 124689999999998762 12345556555 3222 111 1221 14456779999
Q ss_pred EecccCH-----HHHHHHhhcccCCCCcEEEecCe-------ecceeEE--EecCCc--------cchHH---------H
Q psy2470 356 SSATVDA-----EEICQFYNISASSNATILSVKGH-------LYPVSVY--YSNDPV--------VNYVQ---------G 404 (858)
Q Consensus 356 ~SAT~~~-----~~~~~~~~~~~~~~~~~i~v~g~-------~~~v~~~--~~~~~~--------~~~~~---------~ 404 (858)
||||+.. ..+..+++ +.++.++.. ..+.... ....+. ..+.. .
T Consensus 258 lSATp~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 258 LSGSLRDGKANIMQYVGMFG------EIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp EESCGGGCSSCHHHHHHHHC------SEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred EEeCCCCCcccHHHhHHhhC------CeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 9999921 12333443 222222211 1111111 111100 11111 1
Q ss_pred HHHHHHHHHhh---CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 405 VVDTAIKIHES---MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 405 ~~~~l~~i~~~---~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
....+.+++.. .....++||++ .++++.+++.|.+. +..+..+||++++++|.++++.|++|+.+||||
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~-------~~~v~~~~g~~~~~~r~~i~~~f~~g~~~vLv~ 403 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNE-------YDKVYYVSGEVDTETRNIMKTLAENGKGIIIVA 403 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTT-------CSSEEEESSSTTHHHHHHHHHHHHHCCSCEEEE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHc-------CCCeEEEECCCCHHHHHHHHHHHhCCCCCEEEE
Confidence 12223333222 23445666666 88899999999865 447889999999999999999999999999999
Q ss_pred c-CcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCce-EEEeh
Q psy2470 482 T-NIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGH-VYRKN 546 (858)
Q Consensus 482 T-dvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~-~~rL~ 546 (858)
| +++++|+|+|++++||. |+ .|.+.++|.||+||+||.|.|. ++.+|
T Consensus 404 T~~~~~~GiDip~v~~vi~--------~~----------~~~s~~~~~Q~~GR~gR~g~~~~~v~i~ 452 (510)
T 2oca_A 404 SYGVFSTGISVKNLHHVVL--------AH----------GVKSKIIVLQTIGRVLRKHGSKTIATVW 452 (510)
T ss_dssp EHHHHHHSCCCCSEEEEEE--------SS----------CCCSCCHHHHHHHHHHTTTCCCCCCEEE
T ss_pred EcChhhcccccccCcEEEE--------eC----------CCCCHHHHHHHHhcccccCCCCceEEEE
Confidence 9 99999999999999999 65 4566789999999999999854 66666
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-23 Score=225.56 Aligned_cols=129 Identities=19% Similarity=0.275 Sum_probs=109.5
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++++|......+ +.+.+.+++....++++|||++|+++++.+++.|.+. ++.+.++||+|++++|.+++
T Consensus 3 v~~~~i~~~~~~----K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~-------g~~~~~lhg~l~~~~r~~~~ 71 (300)
T 3i32_A 3 YEEEAVPAPVRG----RLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRL-------GHPAQALHGDMSQGERERVM 71 (300)
T ss_dssp SEEEEEECCSSS----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSCCCTHHHHHHH
T ss_pred eEEEEEECCHHH----HHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHH
Confidence 455666555444 4455566666556899999999999999999999876 88999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|++|+++||||||+|++|+|||+|++||| || .|.+.++|.||+|||||.|. |.||.++
T Consensus 72 ~~f~~g~~~vLVaT~va~~Gidi~~v~~VI~--------~d----------~p~s~~~y~Qr~GRagR~g~~G~~i~l~ 132 (300)
T 3i32_A 72 GAFRQGEVRVLVATDVAARGLDIPQVDLVVH--------YR----------MPDRAEAYQHRSGRTGRAGRGGRVVLLY 132 (300)
T ss_dssp HHHHHTSCCEEEECSTTTCSTTCCCCSEEEE--------SS----------CCSSTTHHHHHHTCCC-----CEEEEEE
T ss_pred HHhhcCCceEEEEechhhcCccccceeEEEE--------cC----------CCCCHHHHHHHccCcCcCCCCceEEEEe
Confidence 9999999999999999999999999999999 55 57788999999999999985 9999999
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=5.7e-23 Score=237.42 Aligned_cols=261 Identities=11% Similarity=0.084 Sum_probs=172.0
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc-CccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR-MDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~-~g~~~~~vG 282 (858)
.-+.|+||||||++++.++... ..++||++|+++|+.|.++++.+ +|.+ ++.. .|
T Consensus 111 ~ll~~~TGsGKT~~~l~~i~~~--------------------~~~~Lvl~P~~~L~~Q~~~~~~~-~~~~~v~~~---~g 166 (472)
T 2fwr_A 111 GCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF---SG 166 (472)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH--------------------CSCEEEEESSHHHHHHHHHHGGG-GCGGGEEEB---SS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEECCHHHHHHHHHHHHh-CCCcceEEE---CC
Confidence 4457999999995554443221 12579999999999999998876 6655 4433 11
Q ss_pred EEEeccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
. .....+|+|+|++++...... ...++.+| +..+ ..+ .+ +. ..-+..+++++
T Consensus 167 ----~---~~~~~~Ivv~T~~~l~~~~~~-~~~~~~liIvDEaH~~~~----~~~----~~-~~-----~~~~~~~~l~l 224 (472)
T 2fwr_A 167 ----R---IKELKPLTVSTYDSAYVNAEK-LGNRFMLLIFDEVHHLPA----ESY----VQ-IA-----QMSIAPFRLGL 224 (472)
T ss_dssp ----S---CBCCCSEEEEEHHHHHHTHHH-HTTTCSEEEEETGGGTTS----TTT----HH-HH-----HTCCCSEEEEE
T ss_pred ----C---cCCcCCEEEEEcHHHHHHHHH-hcCCCCEEEEECCcCCCC----hHH----HH-HH-----HhcCCCeEEEE
Confidence 1 112478999999999872211 11234444 4444 222 22 23 12245789999
Q ss_pred ecccC-----HHHHHHHhhcccCCCCcEEEec-----Ce-eccee--EEEecCC--------------------------
Q psy2470 357 SATVD-----AEEICQFYNISASSNATILSVK-----GH-LYPVS--VYYSNDP-------------------------- 397 (858)
Q Consensus 357 SAT~~-----~~~~~~~~~~~~~~~~~~i~v~-----g~-~~~v~--~~~~~~~-------------------------- 397 (858)
|||+. ...+..+++ +.+.... +. ..+.. .......
T Consensus 225 SATp~~~~~~~~~l~~~~~------~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVG------GKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLR 298 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTC------CEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTT
T ss_pred ecCccCCCCHHHHHHHHhC------CeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 99994 112444443 1111110 00 00000 0000000
Q ss_pred ----ccc--------------------------hHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCC
Q psy2470 398 ----VVN--------------------------YVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQRED 447 (858)
Q Consensus 398 ----~~~--------------------------~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~ 447 (858)
... ....+...+.+++.....+++|||+++.+.++.+++.|.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~-------- 370 (472)
T 2fwr_A 299 RAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL-------- 370 (472)
T ss_dssp CCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT--------
T ss_pred chhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC--------
Confidence 000 001234556666666667899999999999999988773
Q ss_pred cceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhH
Q psy2470 448 LKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASA 527 (858)
Q Consensus 448 ~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~ 527 (858)
+..+||++++++|.++++.|++|..+|||||+++++|+|+|++++||+ || .|-+...|
T Consensus 371 ----~~~~~g~~~~~~R~~~~~~F~~g~~~vLv~T~~~~~Gldlp~~~~Vi~--------~~----------~~~s~~~~ 428 (472)
T 2fwr_A 371 ----IPAITHRTSREEREEILEGFRTGRFRAIVSSQVLDEGIDVPDANVGVI--------MS----------GSGSAREY 428 (472)
T ss_dssp ----CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSSCCCSSSCSCCBSEEEE--------EC----------CSSCCHHH
T ss_pred ----cceeeCCCCHHHHHHHHHHHhCCCCCEEEEcCchhcCcccccCcEEEE--------EC----------CCCCHHHH
Confidence 335899999999999999999999999999999999999999999999 66 45678899
Q ss_pred HHhhcccCCCCCc----eEEEeh
Q psy2470 528 VQRAGRAGRVRSG----HVYRKN 546 (858)
Q Consensus 528 ~qR~GRaGR~g~G----~~~rL~ 546 (858)
.||+||+||.|+| .+|.++
T Consensus 429 ~Q~~GR~~R~g~~k~~~~i~~lv 451 (472)
T 2fwr_A 429 IQRLGRILRPSKGKKEAVLYELI 451 (472)
T ss_dssp HHHHHHSBCCCTTTCCEEEEEEE
T ss_pred HHHHhhccCCCCCCceEEEEEEE
Confidence 9999999999977 445555
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.7e-21 Score=231.49 Aligned_cols=281 Identities=12% Similarity=0.088 Sum_probs=151.0
Q ss_pred hhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHH-HHHHHHhCCcCccEeeeeeE
Q psy2470 205 RYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTV-VEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 205 ~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva-~~v~~e~g~~~g~~~~~vG~ 283 (858)
-+.++||||||++.+..+..+-...|. ..+ .....++|+++||++|+.|.. +.+ +.++..++..
T Consensus 202 ll~~~TGsGKT~~~~~~~~~l~~~~~~-------~~~-~~~~~~vlil~P~~~L~~Q~~~~~~-~~~~~~~~~~------ 266 (590)
T 3h1t_A 202 LITMATGTGKTVVAFQISWKLWSARWN-------RTG-DYRKPRILFLADRNVLVDDPKDKTF-TPFGDARHKI------ 266 (590)
T ss_dssp EEEECTTSCHHHHHHHHHHHHHHTTCC-------SSC-SSSCCCEEEEEC-----------CC-TTTCSSEEEC------
T ss_pred EEEecCCCChHHHHHHHHHHHHhcccc-------ccc-ccCCCeEEEEeCCHHHHHHHHHHHH-Hhcchhhhhh------
Confidence 456999999995544433222111110 000 012346899999999999997 433 3333222111
Q ss_pred EEeccceeecceeEEEeecCcccc-CC-----CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SG-----VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~-----~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
. ........+|+|+||++|.+ .. .......+.+| |+.. .+. ...+.+.+. . +..
T Consensus 267 --~-~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~----~~~--~~~~~il~~----~-~~~ 332 (590)
T 3h1t_A 267 --E-GGKVVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA----RDN--SNWREILEY----F-EPA 332 (590)
T ss_dssp --C-C--CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC---------------CHHHHHH----S-TTS
T ss_pred --h-ccCCCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc----cch--HHHHHHHHh----C-Ccc
Confidence 1 11223457999999999987 32 12223345444 6554 211 122333322 1 346
Q ss_pred eEEEEeccc---CHHHHHHHhhcccCCCCcEEEec-------CeecceeEEEecC-------------------------
Q psy2470 352 KLIISSATV---DAEEICQFYNISASSNATILSVK-------GHLYPVSVYYSND------------------------- 396 (858)
Q Consensus 352 q~il~SAT~---~~~~~~~~~~~~~~~~~~~i~v~-------g~~~~v~~~~~~~------------------------- 396 (858)
++++||||. +...+..+|+. ++.... +-..|...+....
T Consensus 333 ~~l~lTATP~~~~~~~~~~~f~~------~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 406 (590)
T 3h1t_A 333 FQIGMTATPLREDNRDTYRYFGN------PIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGREIPDGE 406 (590)
T ss_dssp EEEEEESSCSCTTTHHHHHHSCS------CSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------------
T ss_pred eEEEeccccccccchhHHHHcCC------ceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccccccccc
Confidence 899999998 23445666652 111110 0001111110000
Q ss_pred -Cccc---------hHHHHHHHHHHHHhh-CCCCCEEEEcCCHHHHHHHHHHHHHhccC-CCCcceEEEeccCCCCHHHH
Q psy2470 397 -PVVN---------YVQGVVDTAIKIHES-MPVGDILAFVIGLEQIEHIIGILKQYHNQ-REDLKLLILPMHGSLPNNEQ 464 (858)
Q Consensus 397 -~~~~---------~~~~~~~~l~~i~~~-~~~g~iLVFl~t~~~i~~l~~~L~~~~~~-~~~~~~~v~~LHg~l~q~~r 464 (858)
...+ ......+.+...... .+.+++|||+++++.++.+++.|++.... ....+-.+..+||++++ +|
T Consensus 407 ~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i~g~~~~-~r 485 (590)
T 3h1t_A 407 YQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARVTSEEGK-IG 485 (590)
T ss_dssp --CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEECSSTTHH-HH
T ss_pred CCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEEeCCChH-HH
Confidence 0000 011122223332322 34589999999999999999999854110 00011236778999864 79
Q ss_pred HHhcCCCCCCcEE---EEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC
Q psy2470 465 IKVFRPTPRAMRK---IVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS 539 (858)
Q Consensus 465 ~~v~~~f~~g~~k---VlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~ 539 (858)
.++++.|++|..+ |++||+++++|+|+|++++||+ |+ .|-|...|.||+||+||.++
T Consensus 486 ~~~l~~F~~~~~~~~~ilvtt~~l~~GiDip~v~~Vi~--------~~----------~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 486 KGHLSRFQELETSTPVILTTSQLLTTGVDAPTCKNVVL--------AR----------VVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp HHHHHHHHCTTCCCCCEEEESSTTTTTCCCTTEEEEEE--------ES----------CCCCHHHHHHHHTTSCCCBG
T ss_pred HHHHHHHhCCCCCCCEEEEECChhhcCccchheeEEEE--------Ee----------cCCChHHHHHHHhhhcccCc
Confidence 9999999998766 8999999999999999999999 66 56788999999999999875
|
| >2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.3e-21 Score=191.15 Aligned_cols=137 Identities=15% Similarity=0.217 Sum_probs=111.5
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|...... +.+...+..++...+.+++|||+++++.++.+++.|.+. ++.+..+||+|++.+|.++
T Consensus 7 ~i~q~~~~~~~~---~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~R~~~ 76 (175)
T 2rb4_A 7 NIRQYYVLCEHR---KDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQD-------GHQVSLLSGELTVEQRASI 76 (175)
T ss_dssp CEEEEEEECSSH---HHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTT-------TCCEEEECSSCCHHHHHHH
T ss_pred CceEEEEEcCCh---HhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHH
Confidence 466777654432 336667777877777889999999999999999999976 8889999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+|||||+++++|+|+|++++||++++|... + ...+.++|.||+|||||.|. |.||.++
T Consensus 77 ~~~f~~g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~------~------~~~~~~~~~qr~GR~gR~g~~g~~~~~~ 144 (175)
T 2rb4_A 77 IQRFRDGKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQ------G------EEPDYETYLHRIGRTGRFGKKGLAFNMI 144 (175)
T ss_dssp HHHHHTTSCSEEEECCSCCTTTCCTTEEEEEESSCCC--------C------CSCCHHHHHHHHCBC----CCEEEEEEE
T ss_pred HHHHHcCCCeEEEEecchhcCCCcccCCEEEEeCCCCCc------c------ccCCHHHHHHHhcccccCCCCceEEEEE
Confidence 999999999999999999999999999999994432110 0 11789999999999999986 9999998
|
| >2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.84 E-value=5.1e-21 Score=189.00 Aligned_cols=130 Identities=20% Similarity=0.297 Sum_probs=113.9
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +...+.+++....++++|||+++++.++.+++.|.+. ++.+..+||+|++.+|.++
T Consensus 9 ~i~~~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~ 77 (163)
T 2hjv_A 9 NIEHAVIQVREEN----KFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDL-------GYPCDKIHGGMIQEDRFDV 77 (163)
T ss_dssp CEEEEEEECCGGG----HHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHH
T ss_pred cceEEEEECChHH----HHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHc-------CCcEEEEeCCCCHHHHHHH
Confidence 4666666554433 4455556665556789999999999999999999987 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+|||||+++++|+|+|++++||+ || .|.+.++|.||+||+||.|. |.|+.++
T Consensus 78 ~~~f~~g~~~vlv~T~~~~~Gld~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 139 (163)
T 2hjv_A 78 MNEFKRGEYRYLVATDVAARGIDIENISLVIN--------YD----------LPLEKESYVHRTGRTGRAGNKGKAISFV 139 (163)
T ss_dssp HHHHHTTSCSEEEECGGGTTTCCCSCCSEEEE--------SS----------CCSSHHHHHHHTTTSSCTTCCEEEEEEE
T ss_pred HHHHHcCCCeEEEECChhhcCCchhcCCEEEE--------eC----------CCCCHHHHHHhccccCcCCCCceEEEEe
Confidence 99999999999999999999999999999999 66 57889999999999999986 9999998
|
| >3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=4.6e-21 Score=223.06 Aligned_cols=157 Identities=21% Similarity=0.233 Sum_probs=118.9
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecCeecce-e-----EEEecCCccchHHHHHHHHHHHHhhCCCCCEEE
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKGHLYPV-S-----VYYSNDPVVNYVQGVVDTAIKIHESMPVGDILA 423 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g~~~~v-~-----~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLV 423 (858)
++..||+|. ..+.|.+.++ ..++.+|... |+ . .+|. ...++....+..+...+. .+.++||
T Consensus 411 kL~GMTGTa~te~~Ef~~iY~------l~vv~IPtnk-p~~R~d~~d~vy~--t~~eK~~al~~~I~~~~~--~gqpVLV 479 (822)
T 3jux_A 411 KLAGMTGTAKTEESEFVQVYG------MEVVVIPTHK-PMIRKDHDDLVFR--TQKEKYEKIVEEIEKRYK--KGQPVLV 479 (822)
T ss_dssp EEEEEESSCGGGHHHHHHHSC------CCEEECCCSS-CCCCEECCCEEES--SHHHHHHHHHHHHHHHHH--HTCCEEE
T ss_pred HHeEECCCCchHHHHHHHHhC------CeEEEECCCC-CcceeecCcEEEe--cHHHHHHHHHHHHHHHhh--CCCCEEE
Confidence 678899999 5567777775 5677776432 21 1 1222 112222333333333332 2567999
Q ss_pred EcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCC--------Cee
Q psy2470 424 FVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIP--------GIV 495 (858)
Q Consensus 424 Fl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp--------~V~ 495 (858)
|++|++.++.+++.|.+. |+.+..|||+..+.++..+.+++++| .|+||||+|+||+||+ |+.
T Consensus 480 Ft~S~e~sE~Ls~~L~~~-------Gi~~~vLhgkq~~rE~~ii~~ag~~g--~VtVATdmAgRGtDI~lg~~V~~~Ggl 550 (822)
T 3jux_A 480 GTTSIEKSELLSSMLKKK-------GIPHQVLNAKYHEKEAEIVAKAGQKG--MVTIATNMAGRGTDIKLGPGVAELGGL 550 (822)
T ss_dssp EESSHHHHHHHHHHHHTT-------TCCCEEECSCHHHHHHHHHHHHHSTT--CEEEEETTTTTTCCCCCCTTTTTTTSC
T ss_pred EECCHHHHHHHHHHHHHC-------CCCEEEeeCCchHHHHHHHHhCCCCC--eEEEEcchhhCCcCccCCcchhhcCCC
Confidence 999999999999999977 88999999997777776666677777 5999999999999998 778
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+||| |+ .|.|...|.||+|||||.|. |.++.+.
T Consensus 551 hVIn--------te----------~Pes~r~y~qriGRTGRqG~~G~a~~fv 584 (822)
T 3jux_A 551 CIIG--------TE----------RHESRRIDNQLRGRAGRQGDPGESIFFL 584 (822)
T ss_dssp EEEE--------SS----------CCSSHHHHHHHHTTSSCSSCCCEEEEEE
T ss_pred EEEe--------cC----------CCCCHHHHHHhhCccccCCCCeeEEEEe
Confidence 9999 66 78899999999999999997 9998877
|
| >1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.84 E-value=4.5e-21 Score=189.79 Aligned_cols=130 Identities=19% Similarity=0.358 Sum_probs=109.5
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++++|......+ .+...+.+++...+.+++|||+++++.++.+++.|++. ++.+..+||++++.+|.+++
T Consensus 4 i~~~~~~~~~~~---~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~~ 73 (165)
T 1fuk_A 4 IKQFYVNVEEEE---YKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIM 73 (165)
T ss_dssp CEEEEEEEESGG---GHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHH
T ss_pred cEEEEEECCcch---hHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHc-------CCCEEEEECCCCHHHHHHHH
Confidence 455555443333 24555666666667789999999999999999999976 78899999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|++|..+|||||+++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 74 ~~f~~g~~~vlv~T~~~~~G~d~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~gR~g~~g~~~~~~ 134 (165)
T 1fuk_A 74 KEFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFV 134 (165)
T ss_dssp HHHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred HHHHcCCCEEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhcccccCCCCceEEEEE
Confidence 9999999999999999999999999999999 66 57788999999999999986 9999998
|
| >1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.8e-21 Score=189.14 Aligned_cols=130 Identities=16% Similarity=0.331 Sum_probs=115.2
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +...+.+++...+.+++|||+++++.++.+++.|... ++.+..+||+|++.+|.++
T Consensus 5 ~i~q~~~~~~~~~----K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~-------~~~~~~~hg~~~~~~r~~~ 73 (172)
T 1t5i_A 5 GLQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSR 73 (172)
T ss_dssp CCEEEEEECCGGG----HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHH
T ss_pred CeEEEEEECChHH----HHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhc-------CCCEEEEECCCCHHHHHHH
Confidence 4666776654433 4556666776667789999999999999999999977 8889999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 74 ~~~f~~g~~~vLvaT~~~~~Gldi~~~~~Vi~--------~d----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 135 (172)
T 1t5i_A 74 YQQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 135 (172)
T ss_dssp HHHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred HHHHHCCCCcEEEECCchhcCcchhhCCEEEE--------EC----------CCCCHHHHHHHhcccccCCCCcEEEEEE
Confidence 99999999999999999999999999999999 66 67889999999999999986 9999998
|
| >2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-20 Score=190.37 Aligned_cols=141 Identities=17% Similarity=0.201 Sum_probs=110.1
Q ss_pred CCcEEEecCee---cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEE
Q psy2470 376 NATILSVKGHL---YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLI 452 (858)
Q Consensus 376 ~~~~i~v~g~~---~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v 452 (858)
+|..+.+.... ..++++|...... .+...+.+++... .+++|||+++++.++.+++.|+.. ++.+
T Consensus 14 ~p~~i~v~~~~~~~~~i~q~~~~~~~~----~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~-------g~~~ 81 (191)
T 2p6n_A 14 GTENLYFQSMGAASLDVIQEVEYVKEE----AKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLK-------GVEA 81 (191)
T ss_dssp --------------CCSEEEEEECCGG----GHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHH-------TCCE
T ss_pred CCEEEEECCCCCCCcCceEEEEEcChH----HHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHc-------CCcE
Confidence 34445543221 3456666544433 3455566666554 568999999999999999999977 8889
Q ss_pred EeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhc
Q psy2470 453 LPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAG 532 (858)
Q Consensus 453 ~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~G 532 (858)
..+||++++++|.++++.|++|+.+||||||++++|+|+|++++||| || .|.+.++|.||+|
T Consensus 82 ~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~--------~d----------~p~~~~~~~qr~G 143 (191)
T 2p6n_A 82 VAIHGGKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVIN--------YD----------MPEEIENYVHRIG 143 (191)
T ss_dssp EEECTTSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEE--------SS----------CCSSHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999 77 6788999999999
Q ss_pred ccCCCCC-ceEEEeh
Q psy2470 533 RAGRVRS-GHVYRKN 546 (858)
Q Consensus 533 RaGR~g~-G~~~rL~ 546 (858)
||||.|. |.|+.++
T Consensus 144 R~gR~g~~g~~i~l~ 158 (191)
T 2p6n_A 144 RTGCSGNTGIATTFI 158 (191)
T ss_dssp TSCC---CCEEEEEE
T ss_pred ccccCCCCcEEEEEE
Confidence 9999986 9999998
|
| >2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3e-20 Score=187.53 Aligned_cols=131 Identities=18% Similarity=0.210 Sum_probs=99.6
Q ss_pred cceeEEEecCCccchHHHHHHHHHHHHhhC-CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHH
Q psy2470 387 YPVSVYYSNDPVVNYVQGVVDTAIKIHESM-PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQI 465 (858)
Q Consensus 387 ~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~-~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~ 465 (858)
..++++|......+ +...+.+++... +.+++|||+++++.++.+++.|+.. ++.+..+||++++.+|.
T Consensus 18 ~~i~q~~~~v~~~~----K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-------g~~~~~lhg~~~~~~r~ 86 (185)
T 2jgn_A 18 ENITQKVVWVEESD----KRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-------GYACTSIHGDRSQRDRE 86 (185)
T ss_dssp TTEEEEEEECCGGG----HHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-------TCCEEEEC--------C
T ss_pred CCceEEEEEeCcHH----HHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-------CCceEEEeCCCCHHHHH
Confidence 35666666554443 344555555554 4678999999999999999999976 88999999999999999
Q ss_pred HhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEE
Q psy2470 466 KVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYR 544 (858)
Q Consensus 466 ~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~r 544 (858)
++++.|++|..+||||||++++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.
T Consensus 87 ~~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~--------~d----------~p~s~~~~~Qr~GR~~R~g~~g~~~~ 148 (185)
T 2jgn_A 87 EALHQFRSGKSPILVATAVAARGLDISNVKHVIN--------FD----------LPSDIEEYVHRIGRTGRVGNLGLATS 148 (185)
T ss_dssp HHHHHHHHTSSSEEEEEC------CCCSBSEEEE--------SS----------CCSSHHHHHHHHTTBCCTTSCEEEEE
T ss_pred HHHHHHHcCCCeEEEEcChhhcCCCcccCCEEEE--------eC----------CCCCHHHHHHHccccCCCCCCcEEEE
Confidence 9999999999999999999999999999999999 76 67889999999999999985 99999
Q ss_pred eh
Q psy2470 545 KN 546 (858)
Q Consensus 545 L~ 546 (858)
++
T Consensus 149 ~~ 150 (185)
T 2jgn_A 149 FF 150 (185)
T ss_dssp EE
T ss_pred EE
Confidence 99
|
| >2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.4e-20 Score=221.17 Aligned_cols=110 Identities=20% Similarity=0.232 Sum_probs=99.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..+++|||++|+..++.+++.|++. |+.+..+||++++.+|.++++.|++|+.+|+||||++++|+|+|+|++
T Consensus 444 ~~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~l~~f~~g~~~VLVaT~~l~~GlDip~v~l 516 (661)
T 2d7d_A 444 RNERVLVTTLTKKMSEDLTDYLKEI-------GIKVNYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSL 516 (661)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHHTSCSEEEESCCCSTTCCCTTEEE
T ss_pred cCCeEEEEECCHHHHHHHHHHHHhc-------CCCeEEEeCCCCHHHHHHHHHHHhcCCeEEEEecchhhCCcccCCCCE
Confidence 3578999999999999999999987 888999999999999999999999999999999999999999999999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||+++..+ .| .|.|..+|+||+|||||.++|.|+.++
T Consensus 517 Vi~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~ 553 (661)
T 2d7d_A 517 VAILDADK-------EG------FLRSERSLIQTIGRAARNAEGRVIMYA 553 (661)
T ss_dssp EEETTTTC-------CT------TTTSHHHHHHHHHTTTTSTTCEEEEEC
T ss_pred EEEeCccc-------cc------CCCCHHHHHHHhCcccCCCCCEEEEEE
Confidence 99944211 12 378999999999999999889999988
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=99.79 E-value=2.5e-20 Score=226.63 Aligned_cols=134 Identities=36% Similarity=0.529 Sum_probs=122.7
Q ss_pred cccceeeccCHHHH-hccccCCCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcc
Q psy2470 40 CSRKFSRLYTEASF-SQLNECTPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLT 118 (858)
Q Consensus 40 ~~g~c~rLy~~~~~-~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt 118 (858)
.+|+||+||++++| +.|.+++.|||+|++|++++|++|+||++++..|+|+|||+.+++.+|++.|+.+||||++|+||
T Consensus 432 ~~G~~~~l~~~~~~~~~l~~~~~pEi~r~~L~~~~L~l~~~gi~~~~~f~~~~~p~~~~i~~a~~~L~~lgald~~~~lT 511 (773)
T 2xau_A 432 RPGKCFRLYTEEAFQKELIEQSYPEILRSNLSSTVLELKKLGIDDLVHFDFMDPPAPETMMRALEELNYLACLDDEGNLT 511 (773)
T ss_dssp SSEEEEESSCHHHHHHTSCSSCCCGGGGSCCHHHHHHHHHTTCCCGGGCCCSSCCCHHHHHHHHHHHHHTTSBCTTSCBC
T ss_pred CCCEEEEEecHHHhcccccccCCCccccCcHHHHHHHHHHcCCCChhhccccCCCcHHHHHHHHHHHHHcCCcccCCCcC
Confidence 38999999999999 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHHHHhhhhhcccccCCCCcccccc
Q psy2470 119 KPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEILLHRLRGLCDNVDSGPETFHDHE 174 (858)
Q Consensus 119 ~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~~~r~~~~~~~~~~~~~~f~~~e 174 (858)
++|+.||+||++|++|+||+.+..+. +++++++|.+|.+..+.++..+..|.+.+
T Consensus 512 -~lG~~~a~~pl~p~~~~~l~~~~~~~c~~~~l~i~a~ls~~~~f~~~~~~~~~~~~~~~~f~~~~ 576 (773)
T 2xau_A 512 -PLGRLASQFPLDPMLAVMLIGSFEFQCSQEILTIVAMLSVPNVFIRPTKDKKRADDAKNIFAHPD 576 (773)
T ss_dssp -HHHHHHTTSSSCHHHHHHHHHGGGGTCHHHHHHHHHHHTSCCCBCCCTTCHHHHHHHHHTTCCTT
T ss_pred -hhhhhhccccCCHHHHHHHHhhcccCchhHHHHHHHhcccCCcccCChHHHHHHHHHHHhccCCC
Confidence 79999999999999999999887764 34467788999998888887777776544
|
| >2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-20 Score=187.61 Aligned_cols=117 Identities=17% Similarity=0.304 Sum_probs=106.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
+...+.+++...+.+++|||+++++.++.+++.|+.. ++.+..+||++++.+|.++++.|++|..+|||||++
T Consensus 17 k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~-------~~~~~~~~g~~~~~~r~~~~~~f~~g~~~vLvaT~~ 89 (170)
T 2yjt_D 17 KTALLVHLLKQPEATRSIVFVRKRERVHELANWLREA-------GINNCYLEGEMVQGKRNEAIKRLTEGRVNVLVATDV 89 (170)
Confidence 4455666666556789999999999999999999876 889999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 485 AETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 485 AergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+++|+|+|++++||+ || .|.+.++|.||+|||||.|. |.|+.++
T Consensus 90 ~~~Gid~~~~~~Vi~--------~~----------~p~~~~~~~qr~GR~~R~g~~g~~~~~~ 134 (170)
T 2yjt_D 90 AARGIDIPDVSHVFN--------FD----------MPRSGDTYLHRIGRTARAGRKGTAISLV 134 (170)
Confidence 999999999999999 66 67888999999999999985 9999988
|
| >1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=7e-18 Score=202.18 Aligned_cols=109 Identities=19% Similarity=0.182 Sum_probs=99.7
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.+++|||++|+..++.+++.|.+. ++.+..+||++++.+|.++++.|++|+.+||||||++++|+|+|+|++|
T Consensus 439 ~~~vlVf~~t~~~ae~L~~~L~~~-------gi~~~~lh~~~~~~~R~~~~~~f~~g~~~VLvaT~~l~~GlDip~v~lV 511 (664)
T 1c4o_A 439 GERTLVTVLTVRMAEELTSFLVEH-------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 511 (664)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHHHhc-------CCCceeecCCCCHHHHHHHHHHhhcCCceEEEccChhhcCccCCCCCEE
Confidence 578999999999999999999987 8889999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+++..+ .| .|.|..+|+||+|||||.++|.|+.++
T Consensus 512 I~~d~d~-------~G------~p~s~~~~iQr~GRagR~~~G~~i~~~ 547 (664)
T 1c4o_A 512 AILDADK-------EG------FLRSERSLIQTIGRAARNARGEVWLYA 547 (664)
T ss_dssp EETTTTS-------CS------GGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EEeCCcc-------cC------CCCCHHHHHHHHCccCcCCCCEEEEEE
Confidence 9944211 12 478999999999999999999999988
|
| >3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.8e-18 Score=215.58 Aligned_cols=119 Identities=12% Similarity=0.111 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc--EEEEEe
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM--RKIVIA 481 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~--~kVlvA 481 (858)
.+...+..++...+.+++|||+++++.++.+++.|... .|+.+..+||+|++++|.++++.|++|+ .+||||
T Consensus 489 ~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~------~g~~~~~lhG~~~~~~R~~~l~~F~~g~~~~~vLva 562 (968)
T 3dmq_A 489 PRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLRER------EGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLC 562 (968)
T ss_dssp HHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTT------TCCCEEEECTTSCTTHHHHHHHHHHSTTSSCEEEEC
T ss_pred HHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHH------cCCcEEEEeCCCCHHHHHHHHHHHhCCCCcccEEEe
Confidence 35666777777677889999999999999999999842 1788999999999999999999999998 999999
Q ss_pred cCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-c--eEEEeh
Q psy2470 482 TNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-G--HVYRKN 546 (858)
Q Consensus 482 TdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G--~~~rL~ 546 (858)
|+++++|+|+|++++||+ || .|-+.+.|.||+||+||.|. | .+|+++
T Consensus 563 T~v~~~GlDl~~~~~VI~--------~d----------~p~~~~~~~Q~~GR~~R~Gq~~~v~v~~~~ 612 (968)
T 3dmq_A 563 SEIGSEGRNFQFASHMVM--------FD----------LPFNPDLLEQRIGRLDRIGQAHDIQIHVPY 612 (968)
T ss_dssp SCCTTCSSCCTTCCEEEC--------SS----------CCSSHHHHHHHHHTTSCSSSCSCCEEEEEE
T ss_pred cchhhcCCCcccCcEEEE--------ec----------CCCCHHHHHHHhhccccCCCCceEEEEEec
Confidence 999999999999999999 77 56788999999999999987 5 455555
|
| >2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-17 Score=205.51 Aligned_cols=285 Identities=11% Similarity=0.036 Sum_probs=168.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
.-+.++||||||++++..+ . .+.. .+ ...++||++||++|+.|+.+.+.+-....+. .+.
T Consensus 303 gli~~~TGSGKT~t~~~l~------~----ll~~--~~---~~~rvLvlvpr~eL~~Q~~~~f~~f~~~~v~-----~~~ 362 (1038)
T 2w00_A 303 GYIWHTTGSGKTLTSFKAA------R----LATE--LD---FIDKVFFVVDRKDLDYQTMKEYQRFSPDSVN-----GSE 362 (1038)
T ss_dssp EEEEECTTSSHHHHHHHHH------H----HHTT--CT---TCCEEEEEECGGGCCHHHHHHHHTTSTTCSS-----SSC
T ss_pred EEEEecCCCCHHHHHHHHH------H----HHHh--cC---CCceEEEEeCcHHHHHHHHHHHHHhcccccc-----ccc
Confidence 3456899999994432211 1 1111 11 1135899999999999998877432211110 011
Q ss_pred EEec--cceeecceeEEEeecCcccc-CCCc---cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 284 MFRK--GRMKILVSKIFKMSQGKPSD-SGVE---PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 284 ~vr~--~~~~~~~t~I~v~TpGrLl~-~~~~---~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
.... ........+|+|+|+++|.+ +... +.+..+.+| |+.. . ++.+.+.+. -++.
T Consensus 363 s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~----~----~~~~~I~~~-----~p~a 429 (1038)
T 2w00_A 363 NTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQF----G----EAQKNLKKK-----FKRY 429 (1038)
T ss_dssp CCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHH----H----HHHHHHHHH-----CSSE
T ss_pred CHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcc----h----HHHHHHHHh-----CCcc
Confidence 1100 00112357999999999987 3221 233444444 6655 2 334444321 2457
Q ss_pred eEEEEecccCH-------HHHHHHhhcccCCCCcEEEe-------cCeecceeEEEecCCc---------c---------
Q psy2470 352 KLIISSATVDA-------EEICQFYNISASSNATILSV-------KGHLYPVSVYYSNDPV---------V--------- 399 (858)
Q Consensus 352 q~il~SAT~~~-------~~~~~~~~~~~~~~~~~i~v-------~g~~~~v~~~~~~~~~---------~--------- 399 (858)
+++.||||... .....+|+ .++... .|-..|+.+.|..... .
T Consensus 430 ~~lgfTATP~~~~~~~~~~~t~~~FG------~~i~~Y~l~~AI~dg~l~p~~v~y~~v~~~~~~~~~e~d~~~~~~i~~ 503 (1038)
T 2w00_A 430 YQFGFTGTPIFPENALGSETTASVFG------RELHSYVITDAIRDEKVLKFKVDYNDVRPQFKSLETETDEKKLSAAEN 503 (1038)
T ss_dssp EEEEEESSCCCSTTCTTSCCHHHHHC------SEEEEECHHHHHHHTSSCCEEEEECCCCGGGHHHHTCCCHHHHHHTCS
T ss_pred cEEEEeCCccccccchhhhHHHHHhC------CeeEeecHHHHHhCCCcCCeEEEEEeccchhhhccccccHHHHHHHHH
Confidence 99999999821 24556776 222221 1333355544442100 0
Q ss_pred -------chHHHHHHHHHHHH-hh-------CCCCCEEEEcCCHHHHHHHHHHHHHhcc-----CCCCcceEE-EeccCC
Q psy2470 400 -------NYVQGVVDTAIKIH-ES-------MPVGDILAFVIGLEQIEHIIGILKQYHN-----QREDLKLLI-LPMHGS 458 (858)
Q Consensus 400 -------~~~~~~~~~l~~i~-~~-------~~~g~iLVFl~t~~~i~~l~~~L~~~~~-----~~~~~~~~v-~~LHg~ 458 (858)
+........+..-. .. ..++++||||++++.+..+++.|.+... ..+..++.+ +.+||+
T Consensus 504 ~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~avv~s~~ 583 (1038)
T 2w00_A 504 QQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRIATIFSFA 583 (1038)
T ss_dssp TTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCEEEECCCC
T ss_pred HHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcEEEEEeCC
Confidence 00111122222211 11 1245799999999999999999986521 001123444 556653
Q ss_pred ----------C----------CH-----------------------------HHHHHhcCCCCCCcEEEEEecCcccccC
Q psy2470 459 ----------L----------PN-----------------------------NEQIKVFRPTPRAMRKIVIATNIAETSI 489 (858)
Q Consensus 459 ----------l----------~q-----------------------------~~r~~v~~~f~~g~~kVlvATdvAergl 489 (858)
+ ++ .+|..++++|++|..+|||+||++.||+
T Consensus 584 ~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g~i~ILIvvd~lltGf 663 (1038)
T 2w00_A 584 ANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQDIDLLIVVGMFLTGF 663 (1038)
T ss_dssp C------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTTSSSEEEESSTTSSSC
T ss_pred CccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcCCCeEEEEcchHHhCc
Confidence 2 22 2477888999999999999999999999
Q ss_pred CCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-----ceEEEeh
Q psy2470 490 TIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-----GHVYRKN 546 (858)
Q Consensus 490 dIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-----G~~~rL~ 546 (858)
|+|.+ .|++ +| .|.+...|+||+||+||.++ |.++.+.
T Consensus 664 DiP~l-~tly--------lD----------kpl~~~~liQaIGRtnR~~~~~K~~G~IVdf~ 706 (1038)
T 2w00_A 664 DAPTL-NTLF--------VD----------KNLRYHGLMQAFSRTNRIYDATKTFGNIVTFR 706 (1038)
T ss_dssp CCTTE-EEEE--------EE----------SCCCHHHHHHHHHTTCCCCCTTCCSEEEEESS
T ss_pred Ccccc-cEEE--------Ec----------cCCCccceeehhhccCcCCCCCCCcEEEEEcc
Confidence 99999 6777 66 67788999999999999875 6666655
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=4.4e-17 Score=170.58 Aligned_cols=148 Identities=14% Similarity=0.113 Sum_probs=112.4
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeE
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGY 283 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~ 283 (858)
+-+.|+|||||| .++.++.+.... ..+. .....++++.|+|++|.|++++++++++..+|.. +||
T Consensus 79 ~~i~g~TGsGKT-----t~~~~~~~~~~~------~~~~-~~~~~~l~~~p~~~la~q~~~~~~~~~~~~~~~~---~g~ 143 (235)
T 3llm_A 79 VIIRGATGCGKT-----TQVPQFILDDFI------QNDR-AAECNIVVTQPRRISAVSVAERVAFERGEEPGKS---CGY 143 (235)
T ss_dssp EEEECCTTSSHH-----HHHHHHHHHHHH------HTTC-GGGCEEEEEESSHHHHHHHHHHHHHTTTCCTTSS---EEE
T ss_pred EEEEeCCCCCcH-----HhHHHHHhcchh------hcCC-CCceEEEEeccchHHHHHHHHHHHHHhccccCce---EEE
Confidence 346799999999 222222111110 0111 1234579999999999999999999999999988 999
Q ss_pred EEeccceee-cceeEEEeecCcccc-CCCccCCCcccEE-------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 284 MFRKGRMKI-LVSKIFKMSQGKPSD-SGVEPISQSYLVE-------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 284 ~vr~~~~~~-~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.+++++... ..++|+|+|||+|++ +.. .++++++| |+++ +|+.+..++.+. ...++.|++
T Consensus 144 ~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~----~~~~~~~l~~i~-----~~~~~~~~i 212 (235)
T 3llm_A 144 SVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDIN----TDFLLVVLRDVV-----QAYPEVRIV 212 (235)
T ss_dssp EETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHH----HHHHHHHHHHHH-----HHCTTSEEE
T ss_pred eechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcc----hHHHHHHHHHHH-----hhCCCCeEE
Confidence 999887765 568999999999999 543 46777766 4688 888888888877 445789999
Q ss_pred EEecccCHHHHHHHhhcccCCCCcEEEe
Q psy2470 355 ISSATVDAEEICQFYNISASSNATILSV 382 (858)
Q Consensus 355 l~SAT~~~~~~~~~~~~~~~~~~~~i~v 382 (858)
+||||++.+.|++||+ ++|++.|
T Consensus 213 l~SAT~~~~~~~~~~~-----~~pvi~v 235 (235)
T 3llm_A 213 LMSATIDTSMFCEYFF-----NCPIIEV 235 (235)
T ss_dssp EEECSSCCHHHHHHTT-----SCCCEEC
T ss_pred EEecCCCHHHHHHHcC-----CCCEEeC
Confidence 9999998888999998 5776653
|
| >1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A | Back alignment and structure |
|---|
Probab=99.61 E-value=5.1e-16 Score=180.45 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=88.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp~V 494 (858)
+..++|||+.....++.+++.|.+.. ++.+..+||++++++|.++++.|++| ..+ +|+||+++++|+|++++
T Consensus 340 ~~~k~lvF~~~~~~~~~l~~~l~~~~------~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~ 413 (500)
T 1z63_A 340 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 413 (500)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHHH------TCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTC
T ss_pred cCCcEEEEEehHHHHHHHHHHHHHhh------CCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhC
Confidence 46789999999999999999998531 66788899999999999999999887 454 89999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
++||+ || .|-+.+.+.||+||++|.|. ..+|+++
T Consensus 414 ~~vi~--------~d----------~~~~~~~~~Q~~gR~~R~Gq~~~v~v~~lv 450 (500)
T 1z63_A 414 NRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLI 450 (500)
T ss_dssp SEEEE--------SS----------CCSCC---CHHHHTTTTTTTTSCEEEEEEE
T ss_pred CEEEE--------eC----------CCCCcchHHHHHHHHHHcCCCCeeEEEEEE
Confidence 99999 66 45667788899999999886 4567776
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-14 Score=156.11 Aligned_cols=174 Identities=11% Similarity=0.060 Sum_probs=104.1
Q ss_pred ccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCC
Q psy2470 163 VDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGV 242 (858)
Q Consensus 163 ~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~ 242 (858)
....|..+|...+...+.++..+ +-+.|+|||||| .||.+|.+... ..
T Consensus 111 g~~~pt~iQ~~ai~~il~~~~~~------------------~l~~a~TGsGKT-----~a~~lp~l~~l----~~----- 158 (300)
T 3fmo_B 111 GFNRPSKIQENALPLMLAEPPQN------------------LIAQSQSGTGKT-----AAFVLAMLSQV----EP----- 158 (300)
T ss_dssp TCCSCCHHHHHHHHHHTSSSCCC------------------EEEECCTTSSHH-----HHHHHHHHHHC----CT-----
T ss_pred CCCCCCHHHHHHHHHHHcCCCCe------------------EEEECCCCCCcc-----HHHHHHHHHhh----hc-----
Confidence 34456666666665555542222 224699999999 66666644321 11
Q ss_pred CCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce---eecceeEEEeecCcccc-CCC--ccCCCc
Q psy2470 243 GDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM---KILVSKIFKMSQGKPSD-SGV--EPISQS 316 (858)
Q Consensus 243 g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~---~~~~t~I~v~TpGrLl~-~~~--~~~L~~ 316 (858)
....+++||++|||+||.|++..+.+......+.. +++.++.... ....++|+|+|||+|++ +.. ...+++
T Consensus 159 ~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~~~~~l~~ 235 (300)
T 3fmo_B 159 ANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELK---LAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKLKFIDPKK 235 (300)
T ss_dssp TSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCC---EEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTTCCCCGGG
T ss_pred cCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcE---EEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhcCCCChhh
Confidence 12234689999999999999887744332222333 3333333222 23457899999999999 433 234556
Q ss_pred ccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 317 YLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 317 ~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+.++ ++++ .. ++...+. .+....+++.|+++||||+ ++..+++.+.. +|.++.+.
T Consensus 236 l~~lVlDEad~l~~----~~---~~~~~~~-~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~----~p~~i~~~ 298 (300)
T 3fmo_B 236 IKVFVLDEADVMIA----TQ---GHQDQSI-RIQRMLPRNCQMLLFSATFEDSVWKFAQKVVP----DPNVIKLK 298 (300)
T ss_dssp CSEEEETTHHHHHH----ST---THHHHHH-HHHTTSCTTCEEEEEESCCCHHHHHHHHHHSS----SCEEEEEC
T ss_pred ceEEEEeCHHHHhh----cc---CcHHHHH-HHHHhCCCCCEEEEEeccCCHHHHHHHHHHCC----CCeEEEec
Confidence 6655 6665 22 2222222 2223557789999999999 56778776663 55555553
|
| >1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.8e-13 Score=163.88 Aligned_cols=105 Identities=10% Similarity=0.167 Sum_probs=94.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE---EEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR---KIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~---kVlvATdvAergldIp~ 493 (858)
+..++|||+.....++.+.+.|... ++.+..+||++++++|.++++.|.+|.. .+|+||++++.|||+++
T Consensus 415 ~~~k~lIFs~~~~~~~~l~~~l~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~ 487 (644)
T 1z3i_X 415 TSDKVVLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIG 487 (644)
T ss_dssp CCCEEEEEESCHHHHHHHHHHHHHH-------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTT
T ss_pred CCCEEEEEEccHHHHHHHHHHHHHC-------CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCccccc
Confidence 4678999999999999999999877 8889999999999999999999988754 58999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
+++||+ || .|-+++.+.||+||++|.|. ..+|+++
T Consensus 488 a~~Vi~--------~d----------~~wnp~~~~Qa~gR~~R~Gq~~~v~v~~lv 525 (644)
T 1z3i_X 488 ANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLL 525 (644)
T ss_dssp EEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred CCEEEE--------EC----------CCCCccHHHHHHHhhhhcCCCCceEEEEEE
Confidence 999999 77 56789999999999999986 5677777
|
| >3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=8.8e-15 Score=155.43 Aligned_cols=93 Identities=32% Similarity=0.428 Sum_probs=76.4
Q ss_pred CCCCCC-CCCCCHHHHHHHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHhhccccc----------chHHHHH
Q psy2470 84 ILRFSF-PSPPPAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLLSSGSVL----------DSAVEIL 152 (858)
Q Consensus 84 ~~~f~~-~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~~----------~~~~~~~ 152 (858)
...|+| +||||.+++.+|++.|+.|||||++|+|| ++|++||+||+||++||||+.+..+. .++++++
T Consensus 5 ~~~l~~~ldpP~~~~l~~A~~~L~~LgAld~~g~lT-~lG~~ma~lPl~P~lakmLl~a~~~~c~~~~l~iaA~Ls~~~~ 83 (270)
T 3i4u_A 5 GPEFELGTRGSPMETLITAMEQLYTLGALDDEGLLT-RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNV 83 (270)
T ss_dssp ---------CCHHHHHHHHHHHHHHHTSBCTTSCBC-HHHHHHTTSCSCHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCC
T ss_pred hhccccCCCCcCHHHHHHHHHHHHHcCCcCCCCCcc-HHHHHHHhCCCCHHHHHHHHHhhhcCCHHHHHHHHHHHCCCcc
Confidence 457999 99999999999999999999999999999 79999999999999999999987765 3457789
Q ss_pred HHhhhhhcccccCCCCcccccccch
Q psy2470 153 LHRLRGLCDNVDSGPETFHDHEMCF 177 (858)
Q Consensus 153 ~~r~~~~~~~~~~~~~~f~~~e~~~ 177 (858)
|.+|.+..+.+++++..|.+.+.++
T Consensus 84 f~~p~~~~~~a~~~~~~f~~~~sD~ 108 (270)
T 3i4u_A 84 FYRPKDKQALADQKKAKFHQTEGDH 108 (270)
T ss_dssp BCCCGGGHHHHHHHHHTTCBTTBHH
T ss_pred ccCCchhHHHHHHHHHHccCCCChH
Confidence 9999999999998888888765443
|
| >3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.38 E-value=7e-13 Score=162.64 Aligned_cols=105 Identities=15% Similarity=0.151 Sum_probs=93.8
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCc---EEEEEecCcccccCCCCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAM---RKIVIATNIAETSITIPG 493 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~---~kVlvATdvAergldIp~ 493 (858)
...++|||+.....++.+.+.|... ++.+..+||++++++|.++++.|.+|. ..+|+||.+++.|||+++
T Consensus 571 ~g~kvLIFsq~~~~ld~L~~~L~~~-------g~~~~~i~G~~~~~eR~~~i~~F~~~~~~~~v~LlSt~agg~GlNL~~ 643 (800)
T 3mwy_W 571 DGHRVLIFSQMVRMLDILGDYLSIK-------GINFQRLDGTVPSAQRRISIDHFNSPDSNDFVFLLSTRAGGLGINLMT 643 (800)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHH-------TCCCEEESTTSCHHHHHHHHHTTSSTTCSCCCEEEEHHHHTTTCCCTT
T ss_pred CCCeEEEEechHHHHHHHHHHHHhC-------CCCEEEEeCCCCHHHHHHHHHHhhCCCCCceEEEEecccccCCCCccc
Confidence 3568999999999999999999876 888999999999999999999998754 359999999999999999
Q ss_pred eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 494 IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 494 V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
+++||. || .|-++..+.||.||++|.|. ..+|+|+
T Consensus 644 a~~VI~--------~D----------~~wnp~~~~Qa~gR~~RiGQ~k~V~Vyrlv 681 (800)
T 3mwy_W 644 ADTVVI--------FD----------SDWNPQADLQAMARAHRIGQKNHVMVYRLV 681 (800)
T ss_dssp CCEEEE--------SS----------CCSCSHHHHHHHTTTSCSSCCSCEEEEEEE
T ss_pred cceEEE--------ec----------CCCChhhHHHHHHHHHhcCCCceEEEEEEe
Confidence 999999 77 45677889999999999885 6778887
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.2e-13 Score=143.34 Aligned_cols=147 Identities=14% Similarity=-0.020 Sum_probs=86.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHh--CCcCccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEM--GCRMDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~--g~~~g~~~~~vG~ 283 (858)
+.|+|||||| .++.+|.+..... +...........+|+++|||++|.|+++++.+.. +..+...+++...
T Consensus 62 ~~apTGsGKT-----~~~~l~~~~~l~~---~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 133 (228)
T 3iuy_A 62 VVAQTGTGKT-----LSYLMPGFIHLDS---QPISREQRNGPGMLVLTPTRELALHVEAECSKYSYKGLKSICIYGGRNR 133 (228)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHC------------CCCSEEEECSSHHHHHHHHHHHHHHCCTTCCEEEECC----
T ss_pred EECCCCChHH-----HHHHHHHHHHHHh---ccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcccCceEEEEECCCCh
Confidence 4699999999 5555554432211 1000011233468999999999999999886643 2232222111111
Q ss_pred EEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
... ......+++|+|+|||+|++ +.. ...+.++.++ ++++ .++...+.+.+. ..+++.|+++
T Consensus 134 ~~~-~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~l~ 203 (228)
T 3iuy_A 134 NGQ-IEDISKGVDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLD----MEFEPQIRKILL-----DVRPDRQTVM 203 (228)
T ss_dssp --C-HHHHHSCCSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHH----TTCHHHHHHHHH-----HSCSSCEEEE
T ss_pred HHH-HHHhcCCCCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhc----cchHHHHHHHHH-----hCCcCCeEEE
Confidence 100 01112457999999999998 333 3346666655 6777 555555555444 5677899999
Q ss_pred EecccC--HHHHHHHhh
Q psy2470 356 SSATVD--AEEICQFYN 370 (858)
Q Consensus 356 ~SAT~~--~~~~~~~~~ 370 (858)
||||++ ++.+...+.
T Consensus 204 ~SAT~~~~~~~~~~~~l 220 (228)
T 3iuy_A 204 TSATWPDTVRQLALSYL 220 (228)
T ss_dssp EESCCCHHHHHHHHTTC
T ss_pred EEeeCCHHHHHHHHHHC
Confidence 999994 456666554
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=99.37 E-value=1.5e-13 Score=144.21 Aligned_cols=155 Identities=10% Similarity=-0.050 Sum_probs=90.4
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH---HhCCcCccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT---EMGCRMDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~---e~g~~~g~~~~~vG 282 (858)
+.|+|||||| .+|.+|.+..... +... .......+||++|||+||.|+++.+.+ ..+..++..+|+..
T Consensus 71 ~~apTGsGKT-----~~~~l~~l~~l~~---~~~~-~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~ 141 (242)
T 3fe2_A 71 GVAQTGSGKT-----LSYLLPAIVHINH---QPFL-ERGDGPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAP 141 (242)
T ss_dssp EEECTTSCHH-----HHHHHHHHHHHHT---SCCC-CTTCCCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred EECCCcCHHH-----HHHHHHHHHHHHh---cccc-ccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCC
Confidence 4699999999 5555554432211 1111 112234689999999999999776543 33444333311111
Q ss_pred EEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.... ......+++|+|+|||+|++ +.. ...+.++.++ ++++ .+|...+.+.+. ..+++.|++
T Consensus 142 ~~~~-~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~----~~~~~~~~~i~~-----~~~~~~q~~ 211 (242)
T 3fe2_A 142 KGPQ-IRDLERGVEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLD----MGFEPQIRKIVD-----QIRPDRQTL 211 (242)
T ss_dssp HHHH-HHHHHHCCSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHH----TTCHHHHHHHHT-----TSCSSCEEE
T ss_pred hHHH-HHHhcCCCCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhh----hCcHHHHHHHHH-----hCCccceEE
Confidence 0000 00111357999999999998 432 2345666555 6666 444433333332 567789999
Q ss_pred EEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 355 ISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 355 l~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+||||+ +++.+++.+.. ++..+.+.
T Consensus 212 ~~SAT~~~~~~~~~~~~l~----~~~~i~~~ 238 (242)
T 3fe2_A 212 MWSATWPKEVRQLAEDFLK----DYIHINIG 238 (242)
T ss_dssp EEESCCCHHHHHHHHHHCS----SCEEEEEC
T ss_pred EEEeecCHHHHHHHHHHCC----CCEEEEec
Confidence 999999 46677776653 45555554
|
| >1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.36 E-value=3.6e-13 Score=143.81 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=81.4
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCCCe
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIPGI 494 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp~V 494 (858)
...++|||+.....++.+.+.|.+.. |+.+..+||++++++|.++++.|++| ..+ +|+||+++++|||++++
T Consensus 111 ~~~kvlIFs~~~~~~~~l~~~L~~~~------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~~a 184 (271)
T 1z5z_A 111 EGDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSA 184 (271)
T ss_dssp TTCCEEEEESCHHHHHHHHHHHHHHH------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTC
T ss_pred CCCeEEEEeccHHHHHHHHHHHHHhc------CCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcccC
Confidence 46789999999999999999998521 67788899999999999999999888 666 78999999999999999
Q ss_pred eEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 495 VYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 495 ~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
++||+ || .|-+++.+.||+||++|.|. -.+|+++
T Consensus 185 ~~VI~--------~d----------~~wnp~~~~Q~~gR~~R~Gq~~~v~v~~li 221 (271)
T 1z5z_A 185 NRVIH--------FD----------RWWNPAVEDQATDRVYRIGQTRNVIVHKLI 221 (271)
T ss_dssp SEEEE--------CS----------CCSCTTTC--------------CCEEEEEE
T ss_pred CEEEE--------EC----------CCCChhHHHHHHHhccccCCCCceEEEEEe
Confidence 99999 77 56677888999999999886 4467777
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.7e-13 Score=143.10 Aligned_cols=142 Identities=12% Similarity=0.020 Sum_probs=88.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.......... ....++|+++|||+||.|+++++.+ ++...+.. ++...
T Consensus 96 v~a~TGsGKT-----~~~~l~~l~~l~~~~~~~-----~~~~~~lil~Pt~~La~q~~~~~~~-~~~~~~~~---~~~~~ 161 (262)
T 3ly5_A 96 AAAKTGSGKT-----LAFLIPAVELIVKLRFMP-----RNGTGVLILSPTRELAMQTFGVLKE-LMTHHVHT---YGLIM 161 (262)
T ss_dssp ECCCTTSCHH-----HHHHHHHHHHHHHTTCCG-----GGCCCEEEECSSHHHHHHHHHHHHH-HTTTCCSC---EEEEC
T ss_pred EEccCCCCch-----HHHHHHHHHHHHhccccc-----cCCceEEEEeCCHHHHHHHHHHHHH-HHhhcCce---EEEEE
Confidence 4699999999 555555443221110000 1223589999999999999887754 44444444 33322
Q ss_pred ecccee------ecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRMK------ILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~~------~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..... ..+++|+|+|||++++ +... ..+.++.++ ++++ .++...+.+.+. ..+++
T Consensus 162 g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~----~~~~~~l~~i~~-----~~~~~ 232 (262)
T 3ly5_A 162 GGSNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILD----VGFEEELKQIIK-----LLPTR 232 (262)
T ss_dssp SSSCHHHHHHHHHHCCSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHH----TTCHHHHHHHHH-----HSCSS
T ss_pred CCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhh----hhHHHHHHHHHH-----hCCCC
Confidence 222211 1347999999999998 4333 345666655 7777 555444444433 55678
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +++.+++.+.
T Consensus 233 ~q~l~~SAT~~~~v~~~~~~~l 254 (262)
T 3ly5_A 233 RQTMLFSATQTRKVEDLARISL 254 (262)
T ss_dssp SEEEEECSSCCHHHHHHHHHHC
T ss_pred CeEEEEEecCCHHHHHHHHHHc
Confidence 9999999999 5667777554
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=5.9e-13 Score=138.78 Aligned_cols=152 Identities=12% Similarity=0.047 Sum_probs=92.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+......- . ......++||++|||++|.|+++++. .++...+.. ++...
T Consensus 67 i~a~TGsGKT-----~~~~~~~l~~l~~~~--~---~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~~~~~~---~~~~~ 132 (236)
T 2pl3_A 67 GAAKTGSGKT-----LAFLVPVLEALYRLQ--W---TSTDGLGVLIISPTRELAYQTFEVLR-KVGKNHDFS---AGLII 132 (236)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHHTT--C---CGGGCCCEEEECSSHHHHHHHHHHHH-HHTTTSSCC---EEEEC
T ss_pred EEeCCCCcHH-----HHHHHHHHHHHHhhc--c---cccCCceEEEEeCCHHHHHHHHHHHH-HHhCCCCee---EEEEE
Confidence 4699999999 555555443221110 0 01123468999999999999988774 444444444 33222
Q ss_pred eccce-----eecceeEEEeecCcccc-CCCc--cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCc
Q psy2470 286 RKGRM-----KILVSKIFKMSQGKPSD-SGVE--PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQL 351 (858)
Q Consensus 286 r~~~~-----~~~~t~I~v~TpGrLl~-~~~~--~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~ 351 (858)
+.... ....++|+|+|||+|++ +... ..+.++.++ ++++ .++...+.+.+. ..+++.
T Consensus 133 g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-----~~~~~~ 203 (236)
T 2pl3_A 133 GGKDLKHEAERINNINILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILD----MGFADTMNAVIE-----NLPKKR 203 (236)
T ss_dssp CC--CHHHHHHHTTCSEEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHH----TTTHHHHHHHHH-----TSCTTS
T ss_pred CCCCHHHHHHhCCCCCEEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhc----CCcHHHHHHHHH-----hCCCCC
Confidence 22111 11357999999999998 4332 345566555 6666 555444444433 566789
Q ss_pred eEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 352 KLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 352 q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
|+++||||+ +++.+++.+.. +|..+.+.+
T Consensus 204 ~~l~~SAT~~~~~~~~~~~~~~----~p~~i~~~~ 234 (236)
T 2pl3_A 204 QTLLFSATQTKSVKDLARLSLK----NPEYVWVHE 234 (236)
T ss_dssp EEEEEESSCCHHHHHHHHHSCS----SCEEEECCC
T ss_pred eEEEEEeeCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 999999999 45667776653 566665544
|
| >2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.32 E-value=4.1e-12 Score=150.99 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=52.7
Q ss_pred ccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH---HHhCCcCccEeeeeeE
Q psy2470 207 IGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL---TEMGCRMDFEYISRGY 283 (858)
Q Consensus 207 ~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~---~e~g~~~g~~~~~vG~ 283 (858)
.++|||||| +++.+|.++..+ .| .+++|++|||+||.|.++.+. +.+|.+++..+||..
T Consensus 98 eakTGeGKT-----Lvf~Lp~~L~aL-------~G-----~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv~~i~Gg~~- 159 (997)
T 2ipc_A 98 EMKTGEGKT-----LVATLAVALNAL-------TG-----KGVHVVTVNDYLARRDAEWMGPVYRGLGLSVGVIQHAST- 159 (997)
T ss_dssp ECCSTHHHH-----HHHHHHHHHHHT-------TC-----SCCEEEESSHHHHHHHHHHHHHHHHTTTCCEEECCTTCC-
T ss_pred eccCCCchH-----HHHHHHHHHHHH-------hC-----CCEEEEeCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCCC-
Confidence 489999999 666666544221 11 247999999999999987653 445666555522211
Q ss_pred EEeccceeecceeEEEeecCcc-cc
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKP-SD 307 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrL-l~ 307 (858)
.........++|+|+|||+| +|
T Consensus 160 --~~~r~~ay~~DIvyGTpgrlgfD 182 (997)
T 2ipc_A 160 --PAERRKAYLADVTYVTNSELGFD 182 (997)
T ss_dssp --HHHHHHHHTSSEEEEEHHHHHHH
T ss_pred --HHHHHHHcCCCEEEECchhhhhH
Confidence 11122223579999999999 44
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.31 E-value=3.2e-13 Score=141.64 Aligned_cols=153 Identities=14% Similarity=0.048 Sum_probs=91.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+... ... ......+|+++|||+||.|+++++.+ ++...+.. ++...
T Consensus 71 ~~a~TGsGKT-----~~~~l~~l~~l----~~~----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~---~~~~~ 133 (245)
T 3dkp_A 71 ASAPTGSGKT-----LAFSIPILMQL----KQP----ANKGFRALIISPTRELASQIHRELIK-ISEGTGFR---IHMIH 133 (245)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHH----CSC----CSSSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCC---EECCC
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----hhc----ccCCceEEEEeCCHHHHHHHHHHHHH-HhcccCce---EEEEe
Confidence 4699999999 55555543321 111 11234689999999999999887744 33333433 22111
Q ss_pred -------eccceeecceeEEEeecCcccc-CCCc---cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 286 -------RKGRMKILVSKIFKMSQGKPSD-SGVE---PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 286 -------r~~~~~~~~t~I~v~TpGrLl~-~~~~---~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
+........++|+|+|||+|++ +..+ ..+.++.++ ++++ . ...++...+...+....+
T Consensus 134 ~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~----~-~~~~~~~~~~~i~~~~~~ 208 (245)
T 3dkp_A 134 KAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFE----D-GKTGFRDQLASIFLACTS 208 (245)
T ss_dssp HHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHH----H-C--CHHHHHHHHHHHCCC
T ss_pred cCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcc----c-ccccHHHHHHHHHHhcCC
Confidence 1122233567999999999998 4333 345566655 3333 1 112344444433333445
Q ss_pred CCceEEEEeccc--CHHHHHHHhhcccCCCCcEEEecC
Q psy2470 349 TQLKLIISSATV--DAEEICQFYNISASSNATILSVKG 384 (858)
Q Consensus 349 ~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~g 384 (858)
++.|+++||||+ +++.+.+.+.. ++..+.+.+
T Consensus 209 ~~~~~~~~SAT~~~~v~~~~~~~l~----~p~~i~~~~ 242 (245)
T 3dkp_A 209 HKVRRAMFSATFAYDVEQWCKLNLD----NVISVSIGA 242 (245)
T ss_dssp TTCEEEEEESSCCHHHHHHHHHHSS----SCEEEEECC
T ss_pred CCcEEEEEeccCCHHHHHHHHHhCC----CCEEEEeCC
Confidence 688999999999 45667665553 566666654
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=7.5e-13 Score=138.39 Aligned_cols=141 Identities=12% Similarity=0.039 Sum_probs=81.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE----eeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE----YISR 281 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~----~~~v 281 (858)
+.|+|||||| .++.+|.+... ... ....++||++|||+++.|+++++.+ ++...+.. +++.
T Consensus 72 i~apTGsGKT-----~~~~l~~l~~l----~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~ 136 (237)
T 3bor_A 72 AQAQSGTGKT-----ATFAISILQQL----EIE-----FKETQALVLAPTRELAQQIQKVILA-LGDYMGATCHACIGGT 136 (237)
T ss_dssp ECCCSSHHHH-----HHHHHHHHHHC----CTT-----SCSCCEEEECSSHHHHHHHHHHHHH-HTTTTTCCEEEECC--
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----Hhc-----CCCceEEEEECcHHHHHHHHHHHHH-HhhhcCceEEEEECCC
Confidence 4699999999 44444433311 110 1224689999999999999887754 44333333 1111
Q ss_pred eEEEeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceE
Q psy2470 282 GYMFRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKL 353 (858)
Q Consensus 282 G~~vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~ 353 (858)
.............++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++.|+
T Consensus 137 ~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~~~~~~ 207 (237)
T 3bor_A 137 NVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLS----RGFKDQIYEIFQ-----KLNTSIQV 207 (237)
T ss_dssp -----------CCCSEEEECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHH----TTCHHHHHHHHH-----HSCTTCEE
T ss_pred chHHHHHHHhcCCCCEEEECHHHHHHHHHhCCcCcccCcEEEECCchHhhc----cCcHHHHHHHHH-----hCCCCCeE
Confidence 11111111112237999999999998 332 2345555555 6666 444433333333 45678999
Q ss_pred EEEeccc--CHHHHHHHhh
Q psy2470 354 IISSATV--DAEEICQFYN 370 (858)
Q Consensus 354 il~SAT~--~~~~~~~~~~ 370 (858)
++||||+ +++.+.+.+.
T Consensus 208 i~~SAT~~~~~~~~~~~~l 226 (237)
T 3bor_A 208 VLLSATMPTDVLEVTKKFM 226 (237)
T ss_dssp EEECSSCCHHHHHHHHHHC
T ss_pred EEEEEecCHHHHHHHHHHC
Confidence 9999999 4566666555
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=9.9e-13 Score=138.68 Aligned_cols=138 Identities=12% Similarity=0.013 Sum_probs=87.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+..... +....++||++|||++|.|+++++.+. +...+.. ++...
T Consensus 85 v~a~TGsGKT-----~~~~~~il~~l~~---------~~~~~~~lil~Ptr~L~~q~~~~~~~~-~~~~~~~---~~~~~ 146 (249)
T 3ber_A 85 GLAETGSGKT-----GAFALPILNALLE---------TPQRLFALVLTPTRELAFQISEQFEAL-GSSIGVQ---SAVIV 146 (249)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHHHH---------SCCSSCEEEECSSHHHHHHHHHHHHHH-HGGGTCC---EEEEC
T ss_pred EEcCCCCCch-----hHhHHHHHHHHhc---------CCCCceEEEEeCCHHHHHHHHHHHHHH-hccCCee---EEEEE
Confidence 4699999999 5555554332111 012346899999999999998877443 2222333 22222
Q ss_pred eccce------eecceeEEEeecCcccc-CCC--ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV--EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~--~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+.... ....++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. ..+++
T Consensus 147 g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~----~~~~~~l~~i~~-----~~~~~ 217 (249)
T 3ber_A 147 GGIDSMSQSLALAKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDEADRILN----MDFETEVDKILK-----VIPRD 217 (249)
T ss_dssp TTSCHHHHHHHHHTCCSEEEECHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHH----TTCHHHHHHHHH-----SSCSS
T ss_pred CCCChHHHHHHhcCCCCEEEECHHHHHHHHHcCCCcCccccCEEEEcChhhhhc----cChHHHHHHHHH-----hCCCC
Confidence 22111 12457999999999998 433 2346666655 7777 666655555554 56778
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +++++++.+.
T Consensus 218 ~~~l~~SAT~~~~v~~~~~~~l 239 (249)
T 3ber_A 218 RKTFLFSATMTKKVQKLQRAAL 239 (249)
T ss_dssp SEEEEEESSCCHHHHHHHHHHC
T ss_pred CeEEEEeccCCHHHHHHHHHHC
Confidence 9999999999 4566666555
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=99.29 E-value=1.7e-12 Score=133.98 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=86.0
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~~ 284 (858)
+.|+|||||| .++.+|.+... .. ......+|+++|||+++.|+++++.+ ++...+...+. .|..
T Consensus 56 v~~pTGsGKT-----~~~~~~~l~~l----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~~~~~g~~ 120 (224)
T 1qde_A 56 AQAQSGTGKT-----GTFSIAALQRI----DT-----SVKAPQALMLAPTRELALQIQKVVMA-LAFHMDIKVHACIGGT 120 (224)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHC----CT-----TCCSCCEEEECSSHHHHHHHHHHHHH-HTTTSCCCEEEECC--
T ss_pred EECCCCCcHH-----HHHHHHHHHHH----hc-----cCCCceEEEEECCHHHHHHHHHHHHH-HhcccCceEEEEeCCc
Confidence 4699999999 44444433321 11 11234689999999999999887754 33233332000 2221
Q ss_pred Eeccc-eeecceeEEEeecCcccc-CC-CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 285 FRKGR-MKILVSKIFKMSQGKPSD-SG-VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 285 vr~~~-~~~~~t~I~v~TpGrLl~-~~-~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
...+. .....++|+|+|||+|++ +. ....+.++.++ ++++ .++...+.+.+. ..+++.|+++
T Consensus 121 ~~~~~~~~~~~~~iiv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~l~~i~~-----~~~~~~~~i~ 191 (224)
T 1qde_A 121 SFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLS----SGFKEQIYQIFT-----LLPPTTQVVL 191 (224)
T ss_dssp --------CTTCSEEEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-----HSCTTCEEEE
T ss_pred chHHHHhcCCCCCEEEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhh----hhhHHHHHHHHH-----hCCccCeEEE
Confidence 11111 111348999999999998 33 33345666655 5555 444444444433 4567899999
Q ss_pred EecccC--HHHHHHHhhcccCCCCcEEEecCee
Q psy2470 356 SSATVD--AEEICQFYNISASSNATILSVKGHL 386 (858)
Q Consensus 356 ~SAT~~--~~~~~~~~~~~~~~~~~~i~v~g~~ 386 (858)
||||++ ++.+.+.+.. ++..+.+++..
T Consensus 192 lSAT~~~~~~~~~~~~~~----~p~~i~~~~~~ 220 (224)
T 1qde_A 192 LSATMPNDVLEVTTKFMR----NPVRILVKKDE 220 (224)
T ss_dssp EESSCCHHHHHHHHHHCS----SCEEEC-----
T ss_pred EEeecCHHHHHHHHHHCC----CCEEEEecCCc
Confidence 999994 4556554442 56666665443
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.1e-12 Score=134.80 Aligned_cols=158 Identities=8% Similarity=-0.040 Sum_probs=87.2
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .++.+|.+.....--.............+||++|||+||.|+++++.+. +...+.. ++...
T Consensus 65 ~~a~TGsGKT-----~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~---~~~~~ 135 (253)
T 1wrb_A 65 ACAQTGSGKT-----AAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKF-SLNTPLR---SCVVY 135 (253)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHH-HTTSSCC---EEEEC
T ss_pred EECCCCChHH-----HHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHH-hccCCce---EEEEE
Confidence 4699999999 5555553332111000000000122346899999999999998877543 3333333 22222
Q ss_pred eccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCC--
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRT-- 349 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~-- 349 (858)
++.+. ...+++|+|+|||+|++ +.. ...+..+.++ ++++ .++...+.+.+. .+ ..+.
T Consensus 136 g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~i~~-~~--~~~~~~ 208 (253)
T 1wrb_A 136 GGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD----MGFEPQIRKIIE-ES--NMPSGI 208 (253)
T ss_dssp SSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHH----TTCHHHHHHHHH-SS--CCCCGG
T ss_pred CCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHh----CchHHHHHHHHh-hc--cCCCCC
Confidence 21111 11357999999999998 433 2345555555 6666 443333322222 11 1222
Q ss_pred CceEEEEeccc--CHHHHHHHhhcccCCCCcEEEec
Q psy2470 350 QLKLIISSATV--DAEEICQFYNISASSNATILSVK 383 (858)
Q Consensus 350 ~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~v~ 383 (858)
+.|+++||||+ +++.+++.+.. ++..+.+.
T Consensus 209 ~~q~l~~SAT~~~~~~~~~~~~l~----~~~~i~~~ 240 (253)
T 1wrb_A 209 NRQTLMFSATFPKEIQKLAADFLY----NYIFMTVG 240 (253)
T ss_dssp GCEEEEEESSCCHHHHHHHHHHCS----SCEEEEEC
T ss_pred CcEEEEEEEeCCHHHHHHHHHHcC----CCEEEEEC
Confidence 68999999999 45667765553 45555554
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.24 E-value=1.7e-12 Score=133.72 Aligned_cols=139 Identities=13% Similarity=0.021 Sum_probs=82.9
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc---CccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR---MDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~---~g~~~~~vG 282 (858)
+.|+|||||| .++.+|.+... ... .....+||++|||++|.|+++++.+..... .+.. ++
T Consensus 46 v~a~TGsGKT-----~~~~~~~l~~l----~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~---~~ 108 (219)
T 1q0u_A 46 GQSQTGTGKT-----HAYLLPIMEKI----KPE-----RAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIV---AR 108 (219)
T ss_dssp EECCSSHHHH-----HHHHHHHHHHC----CTT-----SCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCC---EE
T ss_pred EECCCCChHH-----HHHHHHHHHHH----HhC-----cCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceE---EE
Confidence 4699999999 55555533321 110 122468999999999999988775543211 0222 22
Q ss_pred EEEeccc------eeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCC
Q psy2470 283 YMFRKGR------MKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 283 ~~vr~~~------~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~ 348 (858)
...+..+ .....++|+|+|||+|.+ +.. ...+.++.++ ++.+ .++...+.+.+. ..+
T Consensus 109 ~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~ 179 (219)
T 1q0u_A 109 CLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEADLMLD----MGFITDVDQIAA-----RMP 179 (219)
T ss_dssp EECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHH----TTCHHHHHHHHH-----TSC
T ss_pred EEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhh----hChHHHHHHHHH-----hCC
Confidence 2222211 112357899999999998 333 2345555555 5555 444333333333 556
Q ss_pred CCceEEEEeccc--CHHHHHHHhh
Q psy2470 349 TQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 349 ~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
++.|+++||||+ ++..+.+.+.
T Consensus 180 ~~~~~l~~SAT~~~~~~~~~~~~~ 203 (219)
T 1q0u_A 180 KDLQMLVFSATIPEKLKPFLKKYM 203 (219)
T ss_dssp TTCEEEEEESCCCGGGHHHHHHHC
T ss_pred cccEEEEEecCCCHHHHHHHHHHc
Confidence 789999999999 4556665554
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-12 Score=127.15 Aligned_cols=138 Identities=9% Similarity=-0.077 Sum_probs=83.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+... .. .....++++++|||+++.|+++.+.+.. ... +.. ++..
T Consensus 45 v~apTGsGKT-----~~~~~~~~~~~----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~---~~~~ 106 (206)
T 1vec_A 45 ARAKNGTGKS-----GAYLIPLLERL----DL-----KKDNIQAMVIVPTRELALQVSQICIQVS-KHMGGAK---VMAT 106 (206)
T ss_dssp EECCSSSTTH-----HHHHHHHHHHC----CT-----TSCSCCEEEECSCHHHHHHHHHHHHHHT-TTSSSCC---EEEE
T ss_pred EECCCCCchH-----HHHHHHHHHHh----cc-----cCCCeeEEEEeCcHHHHHHHHHHHHHHH-hhcCCce---EEEE
Confidence 4699999999 44444433311 11 1123468999999999999988875443 222 333 3322
Q ss_pred Eeccce------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 285 FRKGRM------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 285 vr~~~~------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+.... ....++|+|+|||+|.+ +.. ...+.++.++ ++++ .++...+.+.+. ..+++
T Consensus 107 ~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~l~~i~~-----~~~~~ 177 (206)
T 1vec_A 107 TGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEADKLLS----QDFVQIMEDIIL-----TLPKN 177 (206)
T ss_dssp CSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTTCSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHH-----HSCTT
T ss_pred eCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcCCcCcccCCEEEEEChHHhHh----hCcHHHHHHHHH-----hCCcc
Confidence 222211 12357899999999988 333 2345566555 6666 555443333333 45668
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ ++..+.+.+.
T Consensus 178 ~~~l~~SAT~~~~~~~~~~~~l 199 (206)
T 1vec_A 178 RQILLYSATFPLSVQKFMNSHL 199 (206)
T ss_dssp CEEEEEESCCCHHHHHHHHHHC
T ss_pred ceEEEEEeeCCHHHHHHHHHHc
Confidence 9999999999 4455555444
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=99.20 E-value=3.5e-12 Score=131.36 Aligned_cols=140 Identities=10% Similarity=0.029 Sum_probs=81.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||+ ++.+|.+... .. .....++||++|||+++.|+++++.+.....-+.. ++...
T Consensus 56 i~~~TGsGKT~-----~~~~~~~~~~----~~-----~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~---v~~~~ 118 (220)
T 1t6n_A 56 CQAKSGMGKTA-----VFVLATLQQL----EP-----VTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVK---VAVFF 118 (220)
T ss_dssp EECCTTSCHHH-----HHHHHHHHHC----CC-----CTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCC---EEEES
T ss_pred EECCCCCchhh-----hhhHHHHHhh----hc-----cCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCce---EEEEe
Confidence 46999999994 4444433211 11 11223689999999999999888754432111333 33222
Q ss_pred eccce-------eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCC
Q psy2470 286 RKGRM-------KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 286 r~~~~-------~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~ 350 (858)
+..+. ....++|+|+|||++++ +.. ...+.++.++ ++++ . .++...+...+ ...+++
T Consensus 119 g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~---~~~~~~~~~i~-~~~~~~ 190 (220)
T 1t6n_A 119 GGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE----Q---LDMRRDVQEIF-RMTPHE 190 (220)
T ss_dssp CCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHS----S---HHHHHHHHHHH-HTSCSS
T ss_pred CCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhc----c---cCcHHHHHHHH-HhCCCc
Confidence 21111 11246999999999998 332 2345666655 4443 2 12223322111 245668
Q ss_pred ceEEEEeccc--CHHHHHHHhh
Q psy2470 351 LKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 351 ~q~il~SAT~--~~~~~~~~~~ 370 (858)
.|+++||||+ +.+.+.+.+.
T Consensus 191 ~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 191 KQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp SEEEEEESCCCTTTHHHHHTTC
T ss_pred CeEEEEEeecCHHHHHHHHHHc
Confidence 9999999999 5667776555
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=7.1e-12 Score=130.25 Aligned_cols=130 Identities=8% Similarity=-0.009 Sum_probs=78.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcC-ccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRM-DFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~-g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+.... .. ....++||++|||+++.|+++++.+. +... +.. ++..
T Consensus 66 ~~a~TGsGKT-----~~~~l~~l~~l~----~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~---~~~~ 127 (230)
T 2oxc_A 66 VQAKSGTGKT-----CVFSTIALDSLV----LE-----NLSTQILILAPTREIAVQIHSVITAI-GIKMEGLE---CHVF 127 (230)
T ss_dssp EECCTTSSHH-----HHHHHHHHHHCC----TT-----SCSCCEEEECSSHHHHHHHHHHHHHH-TTTSTTCC---EEEE
T ss_pred EECCCCCcHH-----HHHHHHHHHHHH----hc-----CCCceEEEEeCCHHHHHHHHHHHHHH-hcccCCce---EEEE
Confidence 4699999999 444454333111 11 12246899999999999999888544 3222 333 3322
Q ss_pred Eeccce-----eecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCch-hhhhHHHHHHHHhcccCCCC
Q psy2470 285 FRKGRM-----KILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQD-VIGEDMKAFAEQLKPLKRTQ 350 (858)
Q Consensus 285 vr~~~~-----~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d-~ll~~lk~~~~~l~~~~~~~ 350 (858)
.+.... ....++|+|+|||+|++ +.. ...+.++.++ ++++ .+ +...+.+.+. ..+++
T Consensus 128 ~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~----~~~~~~~~~~i~~-----~~~~~ 198 (230)
T 2oxc_A 128 IGGTPLSQDKTRLKKCHIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLE----EGSFQEQINWIYS-----SLPAS 198 (230)
T ss_dssp CTTSCHHHHHHHTTSCSEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHS----TTSSHHHHHHHHH-----HSCSS
T ss_pred eCCCCHHHHHHhccCCCEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhc----CcchHHHHHHHHH-----hCCCC
Confidence 222111 11357999999999998 332 2345565554 6666 43 3322222222 45668
Q ss_pred ceEEEEecccCH
Q psy2470 351 LKLIISSATVDA 362 (858)
Q Consensus 351 ~q~il~SAT~~~ 362 (858)
.|+++||||++.
T Consensus 199 ~~~l~lSAT~~~ 210 (230)
T 2oxc_A 199 KQMLAVSATYPE 210 (230)
T ss_dssp CEEEEEESCCCH
T ss_pred CeEEEEEeccCH
Confidence 899999999953
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=125.37 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=83.8
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC-cCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC-RMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~-~~g~~~~~vG~~ 284 (858)
+.|+|||||| .++.+|.+..... ... ......+|+++|||+++.|+++++.+..+. +++..+++..+.
T Consensus 43 i~~~TGsGKT-----~~~~~~~~~~l~~---~~~---~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~ 111 (207)
T 2gxq_A 43 GQARTGTGKT-----LAFALPIAERLAP---SQE---RGRKPRALVLTPTRELALQVASELTAVAPHLKVVAVYGGTGYG 111 (207)
T ss_dssp EECCTTSCHH-----HHHHHHHHHHCCC---CCC---TTCCCSEEEECSSHHHHHHHHHHHHHHCTTSCEEEECSSSCSH
T ss_pred EECCCCChHH-----HHHHHHHHHHHhh---ccc---cCCCCcEEEEECCHHHHHHHHHHHHHHhhcceEEEEECCCChH
Confidence 4699999999 4444443221110 001 112346899999999999999988665432 222221111100
Q ss_pred EeccceeecceeEEEeecCcccc-CCC-ccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 285 FRKGRMKILVSKIFKMSQGKPSD-SGV-EPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~TpGrLl~-~~~-~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.. ......+++|+|+|||++++ +.. ...+.++.++ ++++ .++...+.+.+. ..+++.|+++|
T Consensus 112 ~~-~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~----~~~~~~~~~i~~-----~~~~~~~~i~~ 181 (207)
T 2gxq_A 112 KQ-KEALLRGADAVVATPGRALDYLRQGVLDLSRVEVAVLDEADEMLS----MGFEEEVEALLS-----ATPPSRQTLLF 181 (207)
T ss_dssp HH-HHHHHHCCSEEEECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHH----TTCHHHHHHHHH-----TSCTTSEEEEE
T ss_pred HH-HHHhhCCCCEEEECHHHHHHHHHcCCcchhhceEEEEEChhHhhc----cchHHHHHHHHH-----hCCccCeEEEE
Confidence 00 00111357999999999988 332 3345666655 5556 444333333333 55678999999
Q ss_pred ecccC--HHHHHHHhh
Q psy2470 357 SATVD--AEEICQFYN 370 (858)
Q Consensus 357 SAT~~--~~~~~~~~~ 370 (858)
|||++ ++.+.+.+.
T Consensus 182 SAT~~~~~~~~~~~~~ 197 (207)
T 2gxq_A 182 SATLPSWAKRLAERYM 197 (207)
T ss_dssp CSSCCHHHHHHHHHHC
T ss_pred EEecCHHHHHHHHHHc
Confidence 99994 566776655
|
| >2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.04 E-value=1.7e-10 Score=135.13 Aligned_cols=132 Identities=14% Similarity=0.093 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEE--
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVI-- 480 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlv-- 480 (858)
+...+.+..+... .+|.+|||+|+....+.+++.|... . + ..+|.. .+|.++++.|++|. .|++
T Consensus 370 ~~~~~~l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~~-------~--~-~~q~~~--~~~~~~l~~f~~~~-~il~~V 435 (540)
T 2vl7_A 370 PIYSILLKRIYEN-SSKSVLVFFPSYEMLESVRIHLSGI-------P--V-IEENKK--TRHEEVLELMKTGK-YLVMLV 435 (540)
T ss_dssp HHHHHHHHHHHHT-CSSEEEEEESCHHHHHHHHTTCTTS-------C--E-EESTTT--CCHHHHHHHHHTSC-CEEEEE
T ss_pred HHHHHHHHHHHHh-CCCCEEEEeCCHHHHHHHHHHhccC-------c--e-EecCCC--CcHHHHHHHHhcCC-eEEEEE
Confidence 3445555666554 4788999999999999998877532 2 2 235543 45777888887654 5666
Q ss_pred ecCcccccCCCCC----eeEEEcCCCccceeccCC-------------CCCCcceeeecCHhhHHHhhcccCCCCC--ce
Q psy2470 481 ATNIAETSITIPG----IVYVIDPGFVKARWFNPN-------------TLTNSLVVVPISKASAVQRAGRAGRVRS--GH 541 (858)
Q Consensus 481 ATdvAergldIp~----V~~VId~g~~k~~~yd~~-------------~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~ 541 (858)
+|+.+..|||+|| +++||..|+|....-|+. .+...+ ..|...-...|-+||.-|... |.
T Consensus 436 ~~~~~~EGiD~~~~~~~~~~Vii~~lPf~~~~d~~~~~r~~~~~~~~~~~~~~~-~~~~~~~~~~Q~~GR~iR~~~D~g~ 514 (540)
T 2vl7_A 436 MRAKESEGVEFREKENLFESLVLAGLPYPNVSDDMVRKRIERLSKLTGKDEDSI-IHDLTAIVIKQTIGRAFRDPNDYVK 514 (540)
T ss_dssp C---------------CEEEEEEESCCCCCTTSHHHHHHHHHHHHHHTCCHHHH-HHHHHHHHHHHHHHHHCCSTTCCCE
T ss_pred ecCceecceecCCCcccccEEEEECCCCCCCCCHHHHHHHHHHHHhhCCChhHH-HHHHHHHHHHHHhCCcccCCCccEE
Confidence 8999999999998 999999999865432221 111111 122335667899999999754 87
Q ss_pred EEEehhhH
Q psy2470 542 VYRKNFMY 549 (858)
Q Consensus 542 ~~rL~~~~ 549 (858)
.+-+=..|
T Consensus 515 v~llD~R~ 522 (540)
T 2vl7_A 515 IYLCDSRY 522 (540)
T ss_dssp EEEESGGG
T ss_pred EEEEcccc
Confidence 66443444
|
| >3c0t_A Mediator of RNA polymerase II transcription subunit 18; beta barrel, channel, protein-protein complex, activator, nucleus; 2.40A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=98.61 E-value=4.1e-09 Score=103.83 Aligned_cols=178 Identities=17% Similarity=0.232 Sum_probs=116.2
Q ss_pred HHhhcccccchHHHHHHHhhhhhcccccCCCCcccccccchhccCCCChhHH--------HHHHHhc---CCCCccccch
Q psy2470 137 VLLSSGSVLDSAVEILLHRLRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLL--------LRVRRAL---DFPDMPYQLR 205 (858)
Q Consensus 137 ~l~~s~s~~~~~~~~~~~r~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~--------~~~~~~~---~~~~~~~~~~ 205 (858)
.+++.||+.+...+++.+||+|+| ++ |++|+||+|+| ++.. .+.. .|++|.+ +..|..|
T Consensus 3 E~lL~gsV~~~~~~~ll~~L~GL~--m~--P~~~le~~mvf--k~~~-~P~~~~r~ggsy~rv~~~v~~~~~~d~~~--- 72 (207)
T 3c0t_A 3 ELYLLGVVPSRRFEAVVNSLSKTL--DG--PKTILEFWVVY--RPKD-VPPNLPRQPDSWLRLCSNIESHDETDTEW--- 72 (207)
T ss_dssp EEEEEEEECGGGHHHHHHHHHHHS--EE--EEEEEEEEEEE--EEC-------CCCGGGSEEEEEEGGGSCTTCTTG---
T ss_pred eEEEEeecchhHHHHHHHHHhhcc--cC--CeeeeEEEEEe--ccCC-CCcccCCCCCceEEEEeeccccccccccc---
Confidence 467789999999999999999999 55 99999999999 4433 3433 5666666 4433111
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchH-HHHHHHHHHHHHHhCCcCccEeeeeeEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSID-VACSCTVVEFLTEMGCRMDFEYISRGYM 284 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR-~la~qva~~v~~e~g~~~g~~~~~vG~~ 284 (858)
.+..+|.++|.+++|+| +++.++++.... .+...-.-.+.+++|.+...+|+.-||.
T Consensus 73 -------------------~~~~~W~lr~~g~pEa~---~~~~~~~R~~~~a~~~sgdv~~fl~~lG~~~~~EYv~~G~~ 130 (207)
T 3c0t_A 73 -------------------SKNTQWSMYLEGNSEPK---REDKCGIRPVNRAKLTNGSVTEFVEKMGYEFSHEYIIQGLE 130 (207)
T ss_dssp -------------------GGSSCEEEEEECCCCSS---CTTSCEEEEEEEEEECSSCHHHHHHHTTEEEEEEEEEEEEE
T ss_pred -------------------ccCCceEEEEcCCCcCC---CcCceEEEEeecccccCCCHHHHHHHhCcceEEEEEEeeeE
Confidence 23456777788998874 333456665544 4455555667899999999999999999
Q ss_pred EeccceeecceeEEEee-cCc-cccCCCccC--CCcccEEEecCCCCCchh-----hhhHHHHHHHHhcccCC
Q psy2470 285 FRKGRMKILVSKIFKMS-QGK-PSDSGVEPI--SQSYLVELSILAPGGQDV-----IGEDMKAFAEQLKPLKR 348 (858)
Q Consensus 285 vr~~~~~~~~t~I~v~T-pGr-Ll~~~~~~~--L~~~~vlR~l~~~~~~d~-----ll~~lk~~~~~l~~~~~ 348 (858)
.+..+.+..-.+|.... |.. +..+. +. -.+|-+--++.+++++|. .-.-++.+.++|++...
T Consensus 131 f~~g~~kI~l~ril~~~~p~~~~pp~~--pLd~S~sylle~sv~v~d~~d~~~m~~~~~~L~~f~eqLk~~V~ 201 (207)
T 3c0t_A 131 YFFFDTTVRIYQTLIPSQQRSIKPPFH--PMNEEQPWILHVYTHVADASNQVAMAKAEANLTKVKTLLSAFCD 201 (207)
T ss_dssp EEETTEEEEEEEEEEESSTTCCSSCEE--ESSTTCCEEEEEEEEESCTTCHHHHHHHHHHHHHHHHHHTTTCC
T ss_pred EEeCCEEEEEEeeecCCCCCccCCCcc--ccccCcceEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 99998887666777632 222 11100 11 113332244445556666 35566777778876543
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-08 Score=101.32 Aligned_cols=140 Identities=10% Similarity=-0.109 Sum_probs=69.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHH-HHHHHHHHhCC--cCccEeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSC-TVVEFLTEMGC--RMDFEYIS 280 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~q-va~~v~~e~g~--~~g~~~~~ 280 (858)
+-+.|+||||||++++.++... .... ... ....++|+++|+++++.| ..+.+.+..+. .++..+++
T Consensus 51 ~li~~~tGsGKT~~~~~~~~~~-----~~~~---~~~---~~~~~~lil~p~~~L~~q~~~~~~~~~~~~~~~v~~~~g~ 119 (216)
T 3b6e_A 51 IIICLPTGSGKTRVAVYIAKDH-----LDKK---KKA---SEPGKVIVLVNKVLLVEQLFRKEFQPFLKKWYRVIGLSGD 119 (216)
T ss_dssp EEEECSCHHHHHHHHHHHHHHH-----HHHH---HHT---TCCCCEEEEESSHHHHHHHHHHTHHHHHTTTSCEEECCC-
T ss_pred EEEEcCCCCCHHHHHHHHHHHH-----Hhhc---ccc---cCCCcEEEEECHHHHHHHHHHHHHHHHhccCceEEEEeCC
Confidence 3457999999994444433221 1000 000 112358999999999999 55555443332 32222111
Q ss_pred eeEEEeccceeecceeEEEeecCcccc-CCCc-------cCCCcccEE------EecCCCCCchhhhhHHHHHHHHhccc
Q psy2470 281 RGYMFRKGRMKILVSKIFKMSQGKPSD-SGVE-------PISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPL 346 (858)
Q Consensus 281 vG~~vr~~~~~~~~t~I~v~TpGrLl~-~~~~-------~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~ 346 (858)
.....+.. .....++|+|+||++|.+ +... ..+.++.+| ++.+ .++...+++.+.....+.
T Consensus 120 ~~~~~~~~-~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~----~~~~~~~~~~~~~~~~~~ 194 (216)
T 3b6e_A 120 TQLKISFP-EVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNK----EAVYNNIMRHYLMQKLKN 194 (216)
T ss_dssp --CCCCHH-HHHHHCSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC-----------CHHHHHHHHHHHHHHH
T ss_pred cccchhHH-hhccCCCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhcc----CCcHHHHHHHHHHHhccc
Confidence 11100000 111348999999999988 3322 345566555 5555 344444443332111000
Q ss_pred ---------CCCCceEEEEecc
Q psy2470 347 ---------KRTQLKLIISSAT 359 (858)
Q Consensus 347 ---------~~~~~q~il~SAT 359 (858)
..+..|+++||||
T Consensus 195 ~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 195 NRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHTTCCCCCCCEEEEEECC
T ss_pred ccccccccCCCCcceEEEeecC
Confidence 1257899999998
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.38 E-value=5.1e-08 Score=118.09 Aligned_cols=103 Identities=14% Similarity=0.134 Sum_probs=81.4
Q ss_pred ccceeeccCHHH-Hhcccc---CCCcccccCChhH------HHHHHHHcC-C---CCCCC---CCCCC-CCCHHHHHHHH
Q psy2470 41 SRKFSRLYTEAS-FSQLNE---CTPPEMQRTELSS------AVLQLKALG-I---HNILR---FSFPS-PPPAQNLRVAL 102 (858)
Q Consensus 41 ~g~c~rLy~~~~-~~~~~~---~~~pei~r~~l~~------~~L~lk~lg-~---~~~~~---f~~~~-~P~~~~l~~a~ 102 (858)
+|+||++|++++ ++.+.+ .+.||+++++|.+ .+|.++++| + +++.. ..|+. +|+...+.+|+
T Consensus 398 ~G~~~~l~~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~al 477 (715)
T 2va8_A 398 IGESIVVVRDKEDVDRVFKKYVLSDVEPIESKLGSERAFYTFLLGILSAEGNLSEKQLENFAYESLLAKQLVDVYFDRAI 477 (715)
T ss_dssp CEEEEEECSCGGGHHHHHHHTTSSCCCCCCCSCCSHHHHHHHHHHHHHHHCSEEHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred CceEEEEeCCchHHHHHHHHHHcCCCCCceecCCchhHHHHHHHHHHhccccCCHHHHHHHHHhhHHHhhcchHHHHHHH
Confidence 899999998876 433222 5789999999876 678888888 3 23333 25554 55667899999
Q ss_pred HHHHhcCccccCC---CcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 103 ELLYSLGAMDVNG---NLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 103 ~~L~~l~ald~~~---~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+.|..+|++|.++ .+| ++|+.||.+|++|+.++|++.+-+.
T Consensus 478 ~~L~~~g~i~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 521 (715)
T 2va8_A 478 RWLLEHSFIKEEGNTFALT-NFGKRVADLYINPFTADIIRKGLEG 521 (715)
T ss_dssp HHHHHTTSEEECSSEEEEC-HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHCcCEeecCCeEeeC-hHHHHHHHHcCCHhHHHHHHHHhhh
Confidence 9999999999875 799 7999999999999999999865544
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=98.36 E-value=1.6e-07 Score=100.28 Aligned_cols=121 Identities=6% Similarity=-0.136 Sum_probs=71.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||++++.++... + ..+ . .++|+++||++++.|..+++.+. +...+.. ++...
T Consensus 133 l~~~tGsGKT~~~~~~~~~~---------~---~~~--~--~~~lil~Pt~~L~~q~~~~l~~~-~~~~~~~---~~~~~ 192 (282)
T 1rif_A 133 LNLPTSAGRSLIQALLARYY---------L---ENY--E--GKILIIVPTTALTTQMADDFVDY-RLFSHAM---IKKIG 192 (282)
T ss_dssp ECCCTTSCHHHHHHHHHHHH---------H---HHC--S--SEEEEECSSHHHHHHHHHHHHHH-TSCCGGG---EEECS
T ss_pred EEcCCCCCcHHHHHHHHHHH---------H---HcC--C--CeEEEEECCHHHHHHHHHHHHHh-cccccce---EEEEe
Confidence 47999999994443332211 1 111 1 14799999999999999988654 4333333 22211
Q ss_pred eccce---eecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 286 RKGRM---KILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 286 r~~~~---~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.+... .....+|+|+|||++.+.. ...+.++.++ ++.+ ..+.+.+ ...++..|+++|
T Consensus 193 ~~~~~~~~~~~~~~I~v~T~~~l~~~~-~~~~~~~~~vIiDEaH~~~~--------~~~~~il-----~~~~~~~~~l~l 258 (282)
T 1rif_A 193 GGASKDDKYKNDAPVVVGTWQTVVKQP-KEWFSQFGMMMNDECHLATG--------KSISSII-----SGLNNCMFKFGL 258 (282)
T ss_dssp TTCSSTTCCCTTCSEEEECHHHHTTSC-GGGGGGEEEEEEETGGGCCH--------HHHHHHT-----TTCTTCCEEEEE
T ss_pred CCCcchhhhccCCcEEEEchHHHHhhH-HHHHhhCCEEEEECCccCCc--------ccHHHHH-----HHhhcCCeEEEE
Confidence 22111 1145899999999998731 2344555555 3332 1222222 244567899999
Q ss_pred eccc
Q psy2470 357 SATV 360 (858)
Q Consensus 357 SAT~ 360 (858)
|||+
T Consensus 259 SATp 262 (282)
T 1rif_A 259 SGSL 262 (282)
T ss_dssp CSSC
T ss_pred eCCC
Confidence 9999
|
| >3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1* | Back alignment and structure |
|---|
Probab=98.33 E-value=2.6e-06 Score=99.97 Aligned_cols=133 Identities=13% Similarity=0.091 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEe
Q psy2470 402 VQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIA 481 (858)
Q Consensus 402 ~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvA 481 (858)
.+...+.+..+.... +|.+|||+|+....+.+++. . +..++.=..+++.++..+.|+ +++ .-|++|
T Consensus 378 ~~~l~~~i~~l~~~~-~g~~lvlF~Sy~~l~~v~~~---~-------~~~v~~q~~~~~~~~~~~~~~--~~~-~~vl~~ 443 (551)
T 3crv_A 378 WKRYADYLLKIYFQA-KANVLVVFPSYEIMDRVMSR---I-------SLPKYVESEDSSVEDLYSAIS--ANN-KVLIGS 443 (551)
T ss_dssp HHHHHHHHHHHHHHC-SSEEEEEESCHHHHHHHHTT---C-------CSSEEECCSSCCHHHHHHHTT--SSS-SCEEEE
T ss_pred HHHHHHHHHHHHHhC-CCCEEEEecCHHHHHHHHHh---c-------CCcEEEcCCCCCHHHHHHHHH--hcC-CeEEEE
Confidence 455666666666553 67899999999999888862 1 333333223556666666665 233 379999
Q ss_pred c--CcccccCCCC---C--eeEEEcCCCcccee----------ccCCCCCCcc---eeeecCHhhHHHhhcccCCCCC--
Q psy2470 482 T--NIAETSITIP---G--IVYVIDPGFVKARW----------FNPNTLTNSL---VVVPISKASAVQRAGRAGRVRS-- 539 (858)
Q Consensus 482 T--dvAergldIp---~--V~~VId~g~~k~~~----------yd~~~g~~~l---~~~pis~~~~~qR~GRaGR~g~-- 539 (858)
| .-..-|||+| | .+.||=.|+|.... |+...|.+.. ...| -.-...|=+||.=|...
T Consensus 444 v~gg~~~EGiD~~d~~g~~l~~viI~~lPfp~~dp~~~ar~~~~~~~~g~~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~ 522 (551)
T 3crv_A 444 VGKGKLAEGIELRNNDRSLISDVVIVGIPYPPPDDYLKILAQRVSLKMNRENEEFLFKIP-ALVTIKQAIGRAIRDVNDK 522 (551)
T ss_dssp ESSCCSCCSSCCEETTEESEEEEEEESCCCCCCSHHHHHHHHHTTCCSSTTTHHHHTHHH-HHHHHHHHHHTTCCSTTCE
T ss_pred EecceecccccccccCCcceeEEEEEcCCCCCCCHHHHHHHHHHHHhhCCchhHHHHHHH-HHHHHHHHhccCccCCCcc
Confidence 8 5677799999 3 67777667765432 2212233121 2344 55567788999988764
Q ss_pred ceEEEehhhH
Q psy2470 540 GHVYRKNFMY 549 (858)
Q Consensus 540 G~~~rL~~~~ 549 (858)
|..+-+=..|
T Consensus 523 G~v~llD~R~ 532 (551)
T 3crv_A 523 CNVWLLDKRF 532 (551)
T ss_dssp EEEEEESGGG
T ss_pred EEEEEeehhc
Confidence 7666543333
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-07 Score=113.15 Aligned_cols=104 Identities=13% Similarity=0.065 Sum_probs=84.5
Q ss_pred cccceeeccCHHHHhcccc---CCCcccccCChhH------HHHHHHHcC-CCC---CCC---CCCC----CCCCHHHHH
Q psy2470 40 CSRKFSRLYTEASFSQLNE---CTPPEMQRTELSS------AVLQLKALG-IHN---ILR---FSFP----SPPPAQNLR 99 (858)
Q Consensus 40 ~~g~c~rLy~~~~~~~~~~---~~~pei~r~~l~~------~~L~lk~lg-~~~---~~~---f~~~----~~P~~~~l~ 99 (858)
.+|+||++|++++++.+.+ .+.||+.+++|.+ .+|.+.++| +.+ +.. ..|+ ++|+.+.+.
T Consensus 377 ~~G~~~~l~~~~~~~~~~~~~l~~~~e~~~s~l~~~~~l~~~~l~~~~~g~~~~~~~~~~~l~~t~~~~~~~~~~~~~~~ 456 (702)
T 2p6r_A 377 ERGEAIIIVGKRDREIAVKRYIFGEPERITSKLGVETHLRFHSLSIICDGYAKTLEELEDFFADTFFFKQNEISLSYELE 456 (702)
T ss_dssp SCEEEEEECCGGGHHHHHHTTTSSCCCCCCCCCCSHHHHHHHHHHHHHHTSCSSHHHHHHHHHTSTTHHHHCCCCHHHHH
T ss_pred CCceEEEEecCccHHHHHHHHhcCCCCCceeecCcchhHHHHHHHHHHcCCCCCHHHHHHHHHhhhHHHhhhHHHHHHHH
Confidence 3899999999988765433 5789999999876 667788888 322 222 2343 378999999
Q ss_pred HHHHHHHhcCccccC--CCcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 100 VALELLYSLGAMDVN--GNLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 100 ~a~~~L~~l~ald~~--~~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+|++.|..+|+++.+ +.+| ++|+.||.+|++|..+++++.+-+.
T Consensus 457 ~al~~L~~~g~i~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 502 (702)
T 2p6r_A 457 RVVRQLENWGMVVEAAHLAPT-KLGSLVSRLYIDPLTGFIFHDVLSR 502 (702)
T ss_dssp HHHHHHHHTTSEEESSSEEEC-HHHHHHHHTTCCHHHHHHHHHHTTT
T ss_pred HHHHHHHHCcCeeECCeeccC-hHHHHHHHHhCCHHHHHHHHHHhhc
Confidence 999999999999987 7899 7999999999999999999876555
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.3e-05 Score=83.28 Aligned_cols=111 Identities=7% Similarity=-0.055 Sum_probs=67.3
Q ss_pred chhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc-CccEeeeee
Q psy2470 204 LRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR-MDFEYISRG 282 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~-~g~~~~~vG 282 (858)
.-+.|+||+|||.+++.++..+ ..++++++|+++++.|..+++.+ ++.. ++.. .|
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~--------------------~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~---~g 166 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL--------------------STPTLIVVPTLALAEQWKERLGI-FGEEYVGEF---SG 166 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS--------------------CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEE---SS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc--------------------CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEE---eC
Confidence 5568999999995544433221 12579999999999999888866 6554 3322 11
Q ss_pred EEEeccceeecceeEEEeecCccccCCCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEE
Q psy2470 283 YMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIIS 356 (858)
Q Consensus 283 ~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~ 356 (858)
.. ....+|+|+|++++...... ....+.+| +..+ ..+. .+. ..-+..+++++
T Consensus 167 ----~~---~~~~~i~v~T~~~l~~~~~~-~~~~~~llIiDEaH~l~~--------~~~~-~i~-----~~~~~~~~l~L 224 (237)
T 2fz4_A 167 ----RI---KELKPLTVSTYDSAYVNAEK-LGNRFMLLIFDEVHHLPA--------ESYV-QIA-----QMSIAPFRLGL 224 (237)
T ss_dssp ----SC---BCCCSEEEEEHHHHHHTHHH-HTTTCSEEEEECSSCCCT--------TTHH-HHH-----HTCCCSEEEEE
T ss_pred ----CC---CCcCCEEEEeHHHHHhhHHH-hcccCCEEEEECCccCCC--------hHHH-HHH-----HhccCCEEEEE
Confidence 11 12478999999998772211 11234444 3333 1222 233 12235788999
Q ss_pred eccc
Q psy2470 357 SATV 360 (858)
Q Consensus 357 SAT~ 360 (858)
|||.
T Consensus 225 SATp 228 (237)
T 2fz4_A 225 TATF 228 (237)
T ss_dssp EESC
T ss_pred ecCC
Confidence 9998
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=3.9e-06 Score=101.66 Aligned_cols=104 Identities=16% Similarity=0.071 Sum_probs=75.8
Q ss_pred cccceeeccCHHHHh----ccccCCCcccccC-----ChhHHHHHHHHcCC-------CCCCCCCCC------CCCCHHH
Q psy2470 40 CSRKFSRLYTEASFS----QLNECTPPEMQRT-----ELSSAVLQLKALGI-------HNILRFSFP------SPPPAQN 97 (858)
Q Consensus 40 ~~g~c~rLy~~~~~~----~~~~~~~pei~r~-----~l~~~~L~lk~lg~-------~~~~~f~~~------~~P~~~~ 97 (858)
.+|+||++|+++.++ .+....+|+|... +|...++.+.+.|. .+...+.|+ ++|..+.
T Consensus 376 ~~G~~~~l~~~~~~~~~~~~~~~~~~~~i~s~l~~~~~l~~~ll~~i~~~~~~~~~d~~~~l~~~~~~~~~~~~~~~~~~ 455 (720)
T 2zj8_A 376 EVGEGIIVSTSDDPREVMNHYIFGKPEKLFSQLSNESNLRSQVLALIATFGYSTVEEILKFISNTFYAYQRKDTYSLEEK 455 (720)
T ss_dssp SEEEEEEECSSSCHHHHHHHHTTSCCCCCCCCTTCHHHHHHHHHHHHHHSCCCSHHHHHHHHHTSHHHHHCSCCHHHHHH
T ss_pred CCceEEEEecCccHHHHHHHHhcCCCCCcEeecCchhhHHHHHHHHHHhCCCCCHHHHHHHHHhChHHHhccchHHHHHH
Confidence 378999999987643 4554555555544 45556677777763 222334554 3444578
Q ss_pred HHHHHHHHHhcCccc-cCC---CcchHHHhhhhcCCCCchhhhHHhhcccc
Q psy2470 98 LRVALELLYSLGAMD-VNG---NLTKPVGETMAEMPLHPIHAKVLLSSGSV 144 (858)
Q Consensus 98 l~~a~~~L~~l~ald-~~~---~lt~~lG~~ma~lp~~p~~~~~l~~s~s~ 144 (858)
+.+|++.|..+|+++ +++ .+| ++|+.||.+|++|..+++++.+-+.
T Consensus 456 ~~~~l~~L~~~~~i~~~~~~~~~~t-~lG~~~~~~~~~~~~~~~~~~~~~~ 505 (720)
T 2zj8_A 456 IRNILYFLLENEFIEISLEDKIRPL-SLGIRTAKLYIDPYTAKMFKDKMEE 505 (720)
T ss_dssp HHHHHHHHHHTTSEEECTTSCEEEC-HHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeECCCCcEeeC-hHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999999999998 666 699 7999999999999999999865433
|
| >3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.00019 Score=77.21 Aligned_cols=70 Identities=16% Similarity=0.204 Sum_probs=61.8
Q ss_pred ccceeeccCHHH--------------HhccccCCCcccccCChhHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHHH
Q psy2470 41 SRKFSRLYTEAS--------------FSQLNECTPPEMQRTELSSAVLQLKALGIHNILRF-----SFPSPPPAQNLRVA 101 (858)
Q Consensus 41 ~g~c~rLy~~~~--------------~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f-----~~~~~P~~~~l~~a 101 (858)
+|+||.+|++++ ++.+...+.|||++.++..+++++++++.+++..| +|+++|+.+.+..|
T Consensus 125 ~G~~i~l~~~~e~~~~~~ie~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~f~~~~~~l~~~~~~e~laaa 204 (300)
T 3i32_A 125 GGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAAL 204 (300)
T ss_dssp -CEEEEEECSSTHHHHHHHHHHHTCCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHTCHHHHHHH
T ss_pred CceEEEEeChHHHHHHHHHHHHhCCcceEeCCCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHhcCcHHHHHHH
Confidence 899999999877 55677788899999999999999999998888888 68899999999999
Q ss_pred HHHHHhcCc
Q psy2470 102 LELLYSLGA 110 (858)
Q Consensus 102 ~~~L~~l~a 110 (858)
+..|+....
T Consensus 205 l~~l~~~~~ 213 (300)
T 3i32_A 205 LALLLGGAP 213 (300)
T ss_dssp HHHHHTCCC
T ss_pred HHHHhcCCc
Confidence 999977665
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0016 Score=67.18 Aligned_cols=69 Identities=32% Similarity=0.629 Sum_probs=54.5
Q ss_pred hcCCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 625 TLGHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 625 ~lg~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
.+|..+||.+++++.....-+.|.++|.|+++..+-- .+.+++++|+||+|+|+.+.|+.+..++.++.
T Consensus 136 ~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 136 EPGKSCGYSVRFESILPRPHASIMFCTVGVLLRKLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp CTTSSEEEEETTEEECCCSSSEEEEEEHHHHHHHHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred ccCceEEEeechhhccCCCCCeEEEECHHHHHHHHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 4566778877643322112367999999999988754 48899999999999999999999999999887
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.022 Score=67.36 Aligned_cols=183 Identities=12% Similarity=0.081 Sum_probs=101.2
Q ss_pred CceEEEEeccc-CHHHHHHHhhcccCCCCcEEEecCe--ecceeEEEecCC-------ccchHHHHHHHHHHHHhhCCCC
Q psy2470 350 QLKLIISSATV-DAEEICQFYNISASSNATILSVKGH--LYPVSVYYSNDP-------VVNYVQGVVDTAIKIHESMPVG 419 (858)
Q Consensus 350 ~~q~il~SAT~-~~~~~~~~~~~~~~~~~~~i~v~g~--~~~v~~~~~~~~-------~~~~~~~~~~~l~~i~~~~~~g 419 (858)
...+|++|||+ ..+.|.+.++- +...+.++.. ......++.... ...+.....+.+..+.... +|
T Consensus 375 ~~~~il~SaTL~p~~~~~~~lGl----~~~~~~~~spf~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g 449 (620)
T 4a15_A 375 ESKTIHMSGTLDPFDFYSDITGF----EIPFKKIGEIFPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KK 449 (620)
T ss_dssp GSEEEEEESSCCSHHHHHHHHCC----CCCEEECCCCSCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CS
T ss_pred CCeEEEEccCCCcHHHHHHHhCC----CceeeecCCCCCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CC
Confidence 35789999999 55666666653 1222222211 001112222111 1122344455566666543 67
Q ss_pred CEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC--cccccCCCCC--ee
Q psy2470 420 DILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN--IAETSITIPG--IV 495 (858)
Q Consensus 420 ~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd--vAergldIp~--V~ 495 (858)
.+|||+|+....+.+++.|+.. +.. ..-+++..++..+++.|+ +.-.|+++|. -..-|||+|| .+
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~~-------~~~---~~q~~~~~~~~~ll~~f~-~~~~vL~~v~~gsf~EGiD~~g~~l~ 518 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSFE-------HMK---EYRGIDQKELYSMLKKFR-RDHGTIFAVSGGRLSEGINFPGNELE 518 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCSC-------CEE---CCTTCCSHHHHHHHHHHT-TSCCEEEEETTSCC--------CCCC
T ss_pred CEEEEeCCHHHHHHHHHHHHhc-------chh---ccCCCChhHHHHHHHHhc-cCCcEEEEEecCceeccccCCCCceE
Confidence 8999999999999888877511 222 445566678889999998 8888999974 7777999996 45
Q ss_pred EEEcCCCcccee----------ccCC--CCCCcceeeecCHhhHHHhhcccCCCCC--ceEEEehhhH
Q psy2470 496 YVIDPGFVKARW----------FNPN--TLTNSLVVVPISKASAVQRAGRAGRVRS--GHVYRKNFMY 549 (858)
Q Consensus 496 ~VId~g~~k~~~----------yd~~--~g~~~l~~~pis~~~~~qR~GRaGR~g~--G~~~rL~~~~ 549 (858)
.||=.|+|-..- |+.. .+...-...| ..-...|=+||.=|... |..+-+=..|
T Consensus 519 ~viI~~lPfp~~~p~~~ar~~~~~~~~g~~~~~~y~~p-a~~~l~Qa~GRlIR~~~D~G~v~llD~R~ 585 (620)
T 4a15_A 519 MIILAGLPFPRPDAINRSLFDYYERKYGKGWEYSVVYP-TAIKIRQEIGRLIRSAEDTGACVILDKRA 585 (620)
T ss_dssp EEEESSCCCCCCCHHHHHHHHHHHHHHSCHHHHHTHHH-HHHHHHHHHHTTCCSTTCCEEEEEECGGG
T ss_pred EEEEEcCCCCCCCHHHHHHHHHHHHhhCCCchHHhHHH-HHHHHHHHhCccccCCCceEEEEEEccch
Confidence 666667764321 1111 1110001134 34556799999988654 8766554555
|
| >3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A | Back alignment and structure |
|---|
Probab=95.67 E-value=0.00083 Score=68.29 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=57.0
Q ss_pred cccceeeccCHHH--------------HhccccCCCcccccCChhHHHHHHHHcCCCCCCCC-----CCCCCCCHHHHHH
Q psy2470 40 CSRKFSRLYTEAS--------------FSQLNECTPPEMQRTELSSAVLQLKALGIHNILRF-----SFPSPPPAQNLRV 100 (858)
Q Consensus 40 ~~g~c~rLy~~~~--------------~~~~~~~~~pei~r~~l~~~~L~lk~lg~~~~~~f-----~~~~~P~~~~l~~ 100 (858)
.+|+||.+|++++ +..+...+.|||.+.++..++++++.++.++...| +|+++|+++++..
T Consensus 127 ~~g~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~l~~ 206 (212)
T 3eaq_A 127 RGGRVVLLYGPRERRDVEALERAVGRRFKRVNPPTPEEVLEAKWRHLLARLARVPEKDYRLYQDFAGRLFAEGRVEVVAA 206 (212)
T ss_dssp --BEEEEEECGGGHHHHHHHHHHHSSCCEECCCCCHHHHHHHHHHHHHHHHTTSCHHHHTTTHHHHHHHHHHTCHHHHHH
T ss_pred CCCeEEEEEchhHHHHHHHHHHHhcCcCeecCCCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhcCCHHHHHH
Confidence 3899999999887 55677788899999999999999999999887777 7899999999999
Q ss_pred HHHHH
Q psy2470 101 ALELL 105 (858)
Q Consensus 101 a~~~L 105 (858)
|+..|
T Consensus 207 al~~l 211 (212)
T 3eaq_A 207 LLALL 211 (212)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98766
|
| >4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A* | Back alignment and structure |
|---|
Probab=92.60 E-value=0.024 Score=67.02 Aligned_cols=49 Identities=6% Similarity=-0.058 Sum_probs=35.2
Q ss_pred cchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 203 QLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 203 ~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
.+-+.|+|||||| .|+++|.+.+... . ..++++++||++++.|+.+.+.
T Consensus 24 ~~~~~apTGtGKT-----~a~l~p~l~~~~~------~-----~~kvli~t~T~~l~~Qi~~el~ 72 (620)
T 4a15_A 24 GVALESPTGSGKT-----IMALKSALQYSSE------R-----KLKVLYLVRTNSQEEQVIKELR 72 (620)
T ss_dssp EEEEECCTTSCHH-----HHHHHHHHHHHHH------H-----TCEEEEEESSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHH-----HHHHHHHHHhhhh------c-----CCeEEEECCCHHHHHHHHHHHH
Confidence 3556799999999 6777776554211 1 1257999999999999977653
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=85.88 E-value=0.29 Score=57.66 Aligned_cols=49 Identities=16% Similarity=0.079 Sum_probs=30.3
Q ss_pred chhccccCCcch--hhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHH
Q psy2470 204 LRYIGQPEMGPL--LLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFL 267 (858)
Q Consensus 204 ~~~~a~TGSGKT--~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~ 267 (858)
+-++|++||||| ++++..++ . ....+ ...++++++||+++|.++.+.+.
T Consensus 167 ~vi~G~pGTGKTt~l~~ll~~l-----~-------~~~~~---~~~~vll~APTg~AA~~L~e~~~ 217 (608)
T 1w36_D 167 SVISGGPGTGKTTTVAKLLAAL-----I-------QMADG---ERCRIRLAAPTGKAAARLTESLG 217 (608)
T ss_dssp EEEECCTTSTHHHHHHHHHHHH-----H-------HTCSS---CCCCEEEEBSSHHHHHHHHHHHT
T ss_pred EEEEeCCCCCHHHHHHHHHHHH-----H-------Hhhhc---CCCeEEEEeCChhHHHHHHHHHH
Confidence 456899999999 22222111 1 00011 12358999999999999877654
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=84.24 E-value=1.2 Score=50.42 Aligned_cols=51 Identities=16% Similarity=0.267 Sum_probs=44.2
Q ss_pred ccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
+.+.+++.|.+..++..++.+.+++++|+||+|+++..+++.+++++++..
T Consensus 90 ~~i~~~~~~~l~~~l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~ 140 (459)
T 2z83_A 90 EIVDVMCHATLTHRLMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVE 140 (459)
T ss_dssp CSEEEEEHHHHHHHHHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHH
T ss_pred cEEEEEchHHHHHHhhccccccCCcEEEEECCccCCchhhHHHHHHHHHhc
Confidence 456788899999999999999999999999999999989999998888764
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=83.93 E-value=1.2 Score=50.15 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=54.9
Q ss_pred ccCCchHHHHHHHHHhc-CCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHH
Q psy2470 610 SVTSLANRVSEELRTTL-GHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMG 688 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~l-g~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~ 688 (858)
-.+.|....|.+....+ |.-++|...........-+.+.+++.|.+..++..++.+.+++++|+||+|+++...+..+.
T Consensus 52 lvl~Ptr~La~Q~~~~l~g~~v~~~~~~~~~~~~~~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 131 (451)
T 2jlq_A 52 LILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 131 (451)
T ss_dssp EEEESSHHHHHHHHHHTTTSCEEECCTTCSCCCCSSCCEEEEEHHHHHHHHHHCSCCCCCSEEEEETTTCCSHHHHHHHH
T ss_pred EEECCCHHHHHHHHHHhcCceeeeeeccccccCCCCceEEEEChHHHHHHhhCcccccCCCEEEEeCCccCCcchHHHHH
Confidence 33444455566665555 44444544311111111245778899999999988999999999999999999776676666
Q ss_pred HHHHH
Q psy2470 689 LLKKI 693 (858)
Q Consensus 689 ~l~~l 693 (858)
++...
T Consensus 132 ~~~~~ 136 (451)
T 2jlq_A 132 YISTR 136 (451)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55443
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=82.45 E-value=1.1 Score=54.29 Aligned_cols=79 Identities=13% Similarity=0.061 Sum_probs=64.2
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc-ccccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI-AETSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv-AergldIp~V~~ 496 (858)
+++++|.+||+.=++..++.+++.... .++.+..+||+++..+|...++...+|...|+|+|+- ....+...++.+
T Consensus 417 g~qvlvlaPtr~La~Q~~~~l~~~~~~---~gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~~~~~~l~l 493 (780)
T 1gm5_A 417 GFQTAFMVPTSILAIQHYRRTVESFSK---FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 493 (780)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC---SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred CCeEEEEeCcHHHHHHHHHHHHHHhhh---cCceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhhhhccCCce
Confidence 468999999999999998888855321 2688999999999999999888888899999999972 233467888887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 494 VVID 497 (780)
T 1gm5_A 494 VIID 497 (780)
T ss_dssp EEEE
T ss_pred EEec
Confidence 77 6
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=82.21 E-value=1.6 Score=51.28 Aligned_cols=86 Identities=14% Similarity=0.252 Sum_probs=58.9
Q ss_pred ccCCchHHHHHHHHHhc-CCeeeeeeecCCCCcccCccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHH
Q psy2470 610 SVTSLANRVSEELRTTL-GHTVGYTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMG 688 (858)
Q Consensus 610 ~~l~~a~~~a~~~L~~l-g~lv~y~v~~~~~~~~~~T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~ 688 (858)
-.+.|....|.+....+ |..++|..+........-+.+.+++.|.+..++..++.+.+++++|+||+|+.+...+..+.
T Consensus 219 Lvl~PtreLa~Qi~~~l~~~~v~~~~~~l~~~~tp~~~i~~~t~~~l~~~l~~~~~l~~~~~iViDEah~~~~~~~~~~~ 298 (618)
T 2whx_A 219 LILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTGREIVDLMCHATFTTRLLSSTRVPNYNLIVMDEAHFTDPCSVAARG 298 (618)
T ss_dssp EEEESSHHHHHHHHHHTTTSCEEECCTTSSCCCCSSSCEEEEEHHHHHHHHHHCSSCCCCSEEEEESTTCCSHHHHHHHH
T ss_pred EEEcChHHHHHHHHHHhcCCceeEecccceeccCCCceEEEEChHHHHHHHhccccccCCeEEEEECCCCCCccHHHHHH
Confidence 33445555666666666 55566654421111111245778889999999988999999999999999999777777777
Q ss_pred HHHHHHh
Q psy2470 689 LLKKILK 695 (858)
Q Consensus 689 ~l~~ll~ 695 (858)
.+++.+.
T Consensus 299 ~i~~~l~ 305 (618)
T 2whx_A 299 YISTRVE 305 (618)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 7766653
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 858 | ||||
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 1e-22 | |
| d1yksa2 | 299 | c.37.1.14 (A:325-623) YFV helicase domain {Yellow | 4e-07 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 1e-15 | |
| d2bmfa2 | 305 | c.37.1.14 (A:178-482) Dengue virus helicase {Dengu | 3e-10 | |
| d1a1va1 | 136 | c.37.1.14 (A:190-325) HCV helicase domain {Human h | 5e-11 | |
| d1yksa1 | 140 | c.37.1.14 (A:185-324) YFV helicase domain {Yellow | 0.001 |
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 97.0 bits (241), Expect = 1e-22
Identities = 25/151 (16%), Positives = 51/151 (33%), Gaps = 16/151 (10%)
Query: 394 SNDPVVNYVQGVVDTAIK-IHESMPV--GDILAFVIGLEQIEHIIGILKQYHNQREDLKL 450
SN + + + H+ + F+ + + L++
Sbjct: 9 SNGEIEDVQTDIPSEPWNTGHDWILADKRPTAWFLPSIRAANVMAASLRKAG-------K 61
Query: 451 LILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGF-VKARWFN 509
++ ++ E + + P ++AT+IAE + + V+D K +
Sbjct: 62 SVVVLNRKTFEREYPTIKQKKP----DFILATDIAEMGANL-CVERVLDCRTAFKPVLVD 116
Query: 510 PNTLTNSLVVVPISKASAVQRAGRAGRVRSG 540
+ IS +SA QR GR GR +
Sbjct: 117 EGRKVAIKGPLRISASSAAQRRGRIGRNPNR 147
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 299 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 50.4 bits (120), Expect = 4e-07
Identities = 9/91 (9%), Positives = 24/91 (26%), Gaps = 5/91 (5%)
Query: 54 SQLNECTPPEMQRTE----LSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLG 109
+E + E L + ++ + + + P + +
Sbjct: 156 EPTSENNAHHVCWLEASMLLDNMEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRE 215
Query: 110 AMDVNGNLTKPVGETMAEMPLHPIHAKVLLS 140
+ N +L + +A+ L K
Sbjct: 216 LVR-NCDLPVWLSWQVAKAGLKTNDRKWCFE 245
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 76.5 bits (187), Expect = 1e-15
Identities = 30/181 (16%), Positives = 57/181 (31%), Gaps = 20/181 (11%)
Query: 366 CQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFV 425
++A+ + P+ P ++ G + G + FV
Sbjct: 132 AAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGH------EWVTDFKGKTVWFV 185
Query: 426 IGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIA 485
++ I L++ ++ + ++E IK T V+ T+I+
Sbjct: 186 PSIKAGNDIAACLRK-------NGKKVIQLSRKTFDSEYIK----TRTNDWDFVVTTDIS 234
Query: 486 ETSITIPGIVYVIDPGFVKAR--WFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVY 543
E VIDP + +P++ +SA QR GR GR
Sbjct: 235 EMGANFK-AERVIDPRRCMKPVILTDGEERVILAGPMPVTHSSAAQRRGRVGRNPKNEND 293
Query: 544 R 544
+
Sbjct: 294 Q 294
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Score = 60.3 bits (145), Expect = 3e-10
Identities = 17/115 (14%), Positives = 38/115 (33%), Gaps = 8/115 (6%)
Query: 585 FFQYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDV 644
+ ++ + I P R+ +A + E LR G + Y
Sbjct: 26 YLPAIVREAIKRGLR-TLILAPTRV----VAAEMEEALR---GLPIRYQTPAIRAEHTGR 77
Query: 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILKDKER 699
+ M +++ + Y++I++DE H + G + ++ E
Sbjct: 78 EIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVEMGEA 132
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} Length = 136 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Score = 59.1 bits (142), Expect = 5e-11
Identities = 10/109 (9%), Positives = 23/109 (21%), Gaps = 13/109 (11%)
Query: 587 QYLLEAGWCYDTKLIGITEPRRISVTSLANRVSEELRTTLGHTVGYTIRFDDCTTEDVTK 646
G+ + + P + +S+ G
Sbjct: 27 AAYAAQGYK-----VLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTITTGS------- 74
Query: 647 IKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695
Y +I+ DE H + + +G + +
Sbjct: 75 -PITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSILGIGTVLDQAE 122
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} Length = 140 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Score = 38.1 bits (87), Expect = 0.001
Identities = 11/70 (15%), Positives = 20/70 (28%)
Query: 632 YTIRFDDCTTEDVTKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLK 691
+ + I M L M+ + + VI++DE H + G
Sbjct: 63 FHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAA 122
Query: 692 KILKDKERDF 701
+ E
Sbjct: 123 HRARANESAT 132
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 858 | |||
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 99.95 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 99.92 | |
| d1fuka_ | 162 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.89 | |
| d2j0sa2 | 168 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.88 | |
| d2rb4a1 | 168 | ATP-dependent RNA helicase DDX25 {Human (Homo sapi | 99.87 | |
| d1s2ma2 | 171 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.87 | |
| d1oywa3 | 200 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 99.86 | |
| d1hv8a2 | 155 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.85 | |
| d1c4oa2 | 174 | Nucleotide excision repair enzyme UvrB {Thermus th | 99.85 | |
| d1t5la2 | 181 | Nucleotide excision repair enzyme UvrB {Bacillus c | 99.85 | |
| d1t5ia_ | 168 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.84 | |
| d1jr6a_ | 138 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.77 | |
| d2p6ra4 | 201 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 99.7 | |
| d1wp9a2 | 286 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 99.69 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 99.64 | |
| d1a1va2 | 299 | HCV helicase domain {Human hepatitis C virus (HCV) | 99.63 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 99.62 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 99.59 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 99.58 | |
| d1wrba1 | 238 | putative ATP-dependent RNA helicase VlgB {Flatworm | 99.56 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 99.54 | |
| d1gm5a4 | 206 | RecG helicase domain {Thermotoga maritima [TaxId: | 99.5 | |
| d1gkub2 | 248 | Helicase-like "domain" of reverse gyrase {Archaeon | 99.48 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 99.48 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 99.39 | |
| d2fwra1 | 200 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 99.39 | |
| d2eyqa5 | 211 | Transcription-repair coupling factor, TRCF {Escher | 99.39 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 99.33 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 98.76 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 98.75 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 98.6 | |
| d1z3ix1 | 346 | Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxI | 98.53 | |
| d1tf5a4 | 175 | Translocation ATPase SecA, nucleotide-binding doma | 98.48 | |
| d1oywa2 | 206 | RecQ helicase domain {Escherichia coli [TaxId: 562 | 98.46 | |
| d1z5za1 | 244 | Helicase of the SNF2/Rad54 hamily {Sulfolobus solf | 98.37 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 98.35 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.99 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 97.87 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 97.65 | |
| d1nkta4 | 219 | Translocation ATPase SecA, nucleotide-binding doma | 97.54 | |
| d1yksa2 | 299 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 97.22 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 97.05 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 96.52 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 88.8 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 88.7 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 85.76 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 84.85 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 81.05 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 80.98 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 80.37 |
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=99.95 E-value=3.8e-29 Score=269.19 Aligned_cols=275 Identities=15% Similarity=0.048 Sum_probs=182.6
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| .+|.+| +.... + . ...++||++|||+||.|+++++.+ .+... . + .
T Consensus 14 v~~~TGsGKT-----~~~l~~-~~~~~--~---~-----~~~~~lvi~Ptr~La~q~~~~l~~-~~~~~--~----~--~ 68 (305)
T d2bmfa2 14 MDLHPGAGKT-----KRYLPA-IVREA--I---K-----RGLRTLILAPTRVVAAEMEEALRG-LPIRY--Q----T--P 68 (305)
T ss_dssp ECCCTTSSTT-----TTHHHH-HHHHH--H---H-----HTCCEEEEESSHHHHHHHHHHTTT-SCCBC--C----C---
T ss_pred EEECCCCCHH-----HHHHHH-HHHHH--H---h-----cCCEEEEEccHHHHHHHHHHHHhc-CCcce--e----e--e
Confidence 4699999999 444222 22110 0 1 123589999999999999887742 22211 1 1 1
Q ss_pred eccceeecceeEEEeecCcccc-CCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecc
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSAT 359 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT 359 (858)
..+......+.|+++|+|.|.. ...+..+.++.++ ..++ +.....+++++.+. .+++.|+++||||
T Consensus 69 ~~~~~~~~~~~i~~~t~~~l~~~~~~~~~~~~~~~vViDE~H~~~--~~~~~~~~~l~~~~------~~~~~~~v~~SAT 140 (305)
T d2bmfa2 69 AIRAEHTGREIVDLMCHATFTMRLLSPIRVPNYNLIIMDEAHFTD--PASIAARGYISTRV------EMGEAAGIFMTAT 140 (305)
T ss_dssp -------CCCSEEEEEHHHHHHHHTSSSCCCCCSEEEEESTTCCS--HHHHHHHHHHHHHH------HHTSCEEEEECSS
T ss_pred EEeecccCccccccCCcHHHHHHHhcCccccceeEEEeeeeeecc--hhhHHHHHHHHHhh------ccccceEEEeecC
Confidence 1222334567899999999988 6666677777766 3333 00223355555543 2467899999999
Q ss_pred cCHHHHHHHhhcccCCCCcEEEecCeecceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHH
Q psy2470 360 VDAEEICQFYNISASSNATILSVKGHLYPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILK 439 (858)
Q Consensus 360 ~~~~~~~~~~~~~~~~~~~~i~v~g~~~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~ 439 (858)
++..... +.. ...++.. .....+...... . . .. ..+..+++|||++++++++.+++.|+
T Consensus 141 ~~~~~~~-~~~----~~~~~~~----------~~~~~~~~~~~~-~---~-~~-~~~~~~~~lvf~~~~~~~~~l~~~L~ 199 (305)
T d2bmfa2 141 PPGSRDP-FPQ----SNAPIMD----------EEREIPERSWNS-G---H-EW-VTDFKGKTVWFVPSIKAGNDIAACLR 199 (305)
T ss_dssp CTTCCCS-SCC----CSSCEEE----------EECCCCCSCCSS-C---C-HH-HHSSCSCEEEECSCHHHHHHHHHHHH
T ss_pred CCcceee-ecc----cCCcceE----------EEEeccHHHHHH-H---H-HH-HHhhCCCEEEEeccHHHHHHHHHHHH
Confidence 8432100 000 1222221 111111111000 0 0 11 12346889999999999999999999
Q ss_pred HhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCcccee--ccCCCCCCcc
Q psy2470 440 QYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARW--FNPNTLTNSL 517 (858)
Q Consensus 440 ~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~--yd~~~g~~~l 517 (858)
+. ++.+..+||+++++++. .|++|.++++||||++++|+|+ ++++|||+|...... ||+..+...+
T Consensus 200 ~~-------~~~~~~l~~~~~~~~~~----~~~~~~~~~lvaT~~~~~G~~~-~~~~Vi~~~~~~~~~~~~~~~~~~~~~ 267 (305)
T d2bmfa2 200 KN-------GKKVIQLSRKTFDSEYI----KTRTNDWDFVVTTDISEMGANF-KAERVIDPRRCMKPVILTDGEERVILA 267 (305)
T ss_dssp HH-------TCCCEECCTTCHHHHGG----GGGTSCCSEEEECGGGGTTCCC-CCSEEEECCEEEEEEEECSSSCEEEEE
T ss_pred hC-------CCCEEEeCCcChHHHHh----hhhccchhhhhhhHHHHhcCCC-CccEEEEcCCceeeeEecCCCCceEEe
Confidence 87 78899999999776654 4577899999999999999999 789999999877665 8888888999
Q ss_pred eeeecCHhhHHHhhcccCCCCCceEE-Eeh
Q psy2470 518 VVVPISKASAVQRAGRAGRVRSGHVY-RKN 546 (858)
Q Consensus 518 ~~~pis~~~~~qR~GRaGR~g~G~~~-rL~ 546 (858)
...|+|.++|.||+|||||.|.|..+ -+|
T Consensus 268 ~~~~~s~~~~~Qr~GR~GR~~~~~~~~~~~ 297 (305)
T d2bmfa2 268 GPMPVTHSSAAQRRGRVGRNPKNENDQYIY 297 (305)
T ss_dssp EEEECCHHHHHHHHTTSSCSSSCCCEEEEE
T ss_pred ccccCCHHHHhhhhcCcCcCCCCceEEEEE
Confidence 99999999999999999999986655 455
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=99.92 E-value=6.6e-28 Score=256.61 Aligned_cols=117 Identities=18% Similarity=0.133 Sum_probs=100.0
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
+|+++|||||..+++.+++.|++. |+.|++|||.++.+++.+ |++|+++|||||||||+|||| +|.+|
T Consensus 36 ~g~~~~F~~s~~~~~~~a~~L~~~-------g~~V~~l~~~~~~~e~~~----~~~~~~~~~~~t~~~~~~~~~-~~~~v 103 (299)
T d1yksa2 36 KRPTAWFLPSIRAANVMAASLRKA-------GKSVVVLNRKTFEREYPT----IKQKKPDFILATDIAEMGANL-CVERV 103 (299)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHT-------TCCEEECCSSSCC------------CCCSEEEESSSTTCCTTC-CCSEE
T ss_pred CCCEEEEeCCHHHHHHHHHHHHhc-------CCeEEEEcCcCcHhHHhh----hhcCCcCEEEEechhhhceec-CceEE
Confidence 789999999999999999999987 888999999999988765 567899999999999999999 69999
Q ss_pred EcCCCc-cceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCc-eEEEeh
Q psy2470 498 IDPGFV-KARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSG-HVYRKN 546 (858)
Q Consensus 498 Id~g~~-k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G-~~~rL~ 546 (858)
||+|++ |...||+..++..+...|+|++++.||.||+||.+.+ .||.+|
T Consensus 104 id~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~qr~gr~gr~~~~~~~~~~y 154 (299)
T d1yksa2 104 LDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRNPNRDGDSYYY 154 (299)
T ss_dssp EECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCCTTCCCEEEEE
T ss_pred EecCceeceeeecCCCCeeEEeeeecCHHHHHHhcccccccCCCceEEEEe
Confidence 999996 6667999999999999999999999999999998653 355555
|
| >d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=9.3e-24 Score=206.08 Aligned_cols=129 Identities=19% Similarity=0.355 Sum_probs=111.4
Q ss_pred eEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcC
Q psy2470 390 SVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFR 469 (858)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~ 469 (858)
+++|...... +.+.+.+.+++...+..++||||+++..++.+++.|... ++.+..+||++++++|.++++
T Consensus 2 ~q~~~~v~~~---e~K~~~L~~ll~~~~~~k~iIF~~s~~~~~~l~~~L~~~-------~~~~~~~~~~~~~~~r~~~l~ 71 (162)
T d1fuka_ 2 KQFYVNVEEE---EYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRND-------KFTVSAIYSDLPQQERDTIMK 71 (162)
T ss_dssp EEEEEEEESG---GGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHH
T ss_pred EEEEEEeCCc---HHHHHHHHHHHHhCCCCcEEEEEEEEchHHHHHHHHhhc-------CceEEEeccCCchhhHHHHHH
Confidence 4556543322 235666777777777889999999999999999999987 889999999999999999999
Q ss_pred CCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 470 PTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 470 ~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
.|+.|+.+||||||+++||+|+|+|++||| || .|.+.+.|+||+|||||.|. |.|+.++
T Consensus 72 ~f~~~~~~iLv~Tdv~~rGiDi~~v~~VI~--------~d----------~P~~~~~yihR~GR~gR~g~~g~~i~~~ 131 (162)
T d1fuka_ 72 EFRSGSSRILISTDLLARGIDVQQVSLVIN--------YD----------LPANKENYIHRIGRGGRFGRKGVAINFV 131 (162)
T ss_dssp HHHTTSCSEEEEEGGGTTTCCCCSCSEEEE--------SS----------CCSSGGGGGGSSCSCC-----CEEEEEE
T ss_pred HHhhcccceeeccccccccccCCCceEEEE--------ec----------cchhHHHHHhhccccccCCCccEEEEEc
Confidence 999999999999999999999999999999 87 78889999999999999998 9999999
|
| >d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=2.9e-23 Score=203.69 Aligned_cols=132 Identities=14% Similarity=0.365 Sum_probs=116.7
Q ss_pred cceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHH
Q psy2470 387 YPVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIK 466 (858)
Q Consensus 387 ~~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~ 466 (858)
..++++|...... +.+.+.|.+++......++||||++++.++.+++.|+.. ++.+..+||++++++|.+
T Consensus 6 ~~i~q~~v~v~~~---~~K~~~L~~ll~~~~~~k~iiF~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~r~~ 75 (168)
T d2j0sa2 6 EGIKQFFVAVERE---EWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREA-------NFTVSSMHGDMPQKERES 75 (168)
T ss_dssp TTEEEEEEEESST---THHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHT-------TCCCEEECTTSCHHHHHH
T ss_pred CCcEEEEEEecCh---HHHHHHHHHHHHhCCCCceEEEeeeHHHHHHHHHHhhhc-------ccchhhhhhhhhHHHHHH
Confidence 3567777654433 235566666766666789999999999999999999987 888999999999999999
Q ss_pred hcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEe
Q psy2470 467 VFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRK 545 (858)
Q Consensus 467 v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL 545 (858)
+++.|++|+.+||||||+++||+|+|+|++||| || .|.+.+.|+||+|||||.|. |.||.+
T Consensus 76 ~~~~fk~g~~~iLv~Td~~~rGiDi~~v~~VIn--------~d----------~P~~~~~yihR~GR~gR~g~~G~~i~~ 137 (168)
T d2j0sa2 76 IMKEFRSGASRVLISTDVWARGLDVPQVSLIIN--------YD----------LPNNRELYIHRIGRSGRYGRKGVAINF 137 (168)
T ss_dssp HHHHHHHTSSCEEEECGGGSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHTTSSGGGCCEEEEEE
T ss_pred HHHHHhcCCccEEeccchhcccccccCcceEEE--------ec----------CCcCHHHHHhhhccccccCCCcEEEEE
Confidence 999999999999999999999999999999999 77 78899999999999999998 999999
Q ss_pred h
Q psy2470 546 N 546 (858)
Q Consensus 546 ~ 546 (858)
+
T Consensus 138 ~ 138 (168)
T d2j0sa2 138 V 138 (168)
T ss_dssp E
T ss_pred E
Confidence 9
|
| >d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.87 E-value=1.5e-22 Score=199.43 Aligned_cols=130 Identities=16% Similarity=0.300 Sum_probs=117.5
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +...|.+++...+.+++||||++++.++.++..|... |+.+..+||++++++|.++
T Consensus 6 ~i~q~yi~v~~~~----K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~-------g~~~~~~h~~~~~~~r~~~ 74 (171)
T d1s2ma2 6 GITQYYAFVEERQ----KLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDL-------GYSCYYSHARMKQQERNKV 74 (171)
T ss_dssp TEEEEEEECCGGG----HHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHH-------TCCEEEECTTSCHHHHHHH
T ss_pred ceEEEEEEcCHHH----HHHHHHHHHHhCCCCceEEEEeeeehhhHhHHhhhcc-------cccccccccccchhhhhhh
Confidence 4677887655443 5566677777777889999999999999999999987 8999999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||+++||+|+|++++||| || .|-+..+|+||+|||||.|. |.|+.++
T Consensus 75 ~~~f~~~~~~ilv~Td~~~~Gid~~~v~~VI~--------~d----------~p~~~~~y~qr~GR~gR~g~~g~~i~~v 136 (171)
T d1s2ma2 75 FHEFRQGKVRTLVCSDLLTRGIDIQAVNVVIN--------FD----------FPKTAETYLHRIGRSGRFGHLGLAINLI 136 (171)
T ss_dssp HHHHHTTSSSEEEESSCSSSSCCCTTEEEEEE--------SS----------CCSSHHHHHHHHCBSSCTTCCEEEEEEE
T ss_pred hhhcccCccccccchhHhhhccccceeEEEEe--------cC----------CcchHHHHHHHhhhcccCCCccEEEEEe
Confidence 99999999999999999999999999999999 77 78899999999999999986 9999998
|
| >d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=4.3e-22 Score=200.61 Aligned_cols=117 Identities=21% Similarity=0.250 Sum_probs=108.2
Q ss_pred HHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCc
Q psy2470 405 VVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNI 484 (858)
Q Consensus 405 ~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdv 484 (858)
+++.+..++......++|||++|++.++.++..|... ++.+..+||++++++|.++++.|++|+.+||||||+
T Consensus 17 k~~~L~~~l~~~~~~~~IIF~~t~~~~~~l~~~l~~~-------~~~~~~~h~~~~~~~r~~~~~~f~~g~~~ilvaTd~ 89 (200)
T d1oywa3 17 PLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSK-------GISAAAYHAGLENNVRADVQEKFQRDDLQIVVATVA 89 (200)
T ss_dssp HHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHHHHHHTTSCSEEEECTT
T ss_pred HHHHHHHHHHhcCCCCEEEEEeeehhhHHhhhhhccC-------CceeEEecCCCcHHHHHHHHHHHhcccceEEEecch
Confidence 3455666666666778999999999999999999987 889999999999999999999999999999999999
Q ss_pred ccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 485 AETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 485 AergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+++|||+|+|++||+ || .|.+.++|+||+|||||.|. |.|+.++
T Consensus 90 ~~~GiD~p~v~~VI~--------~~----------~P~~~~~y~qr~GR~gR~g~~g~ai~~~ 134 (200)
T d1oywa3 90 FGMGINKPNVRFVVH--------FD----------IPRNIESYYQETGRAGRDGLPAEAMLFY 134 (200)
T ss_dssp SCTTTCCTTCCEEEE--------SS----------CCSSHHHHHHHHTTSCTTSSCEEEEEEE
T ss_pred hhhccCCCCCCEEEE--------CC----------CccchHHHHHHhhhhhcCCCCceEEEec
Confidence 999999999999999 66 78899999999999999997 9999999
|
| >d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=5.4e-22 Score=192.14 Aligned_cols=129 Identities=19% Similarity=0.293 Sum_probs=114.5
Q ss_pred ceeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHh
Q psy2470 388 PVSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKV 467 (858)
Q Consensus 388 ~v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v 467 (858)
.++++|......+ +.+.|.+++.. .++++||||++++.++.+++.|++. ++.+..+||++++.+|..+
T Consensus 3 nI~~~~i~v~~~~----K~~~L~~ll~~-~~~k~IIF~~s~~~~~~l~~~L~~~-------g~~~~~~~~~~~~~~r~~~ 70 (155)
T d1hv8a2 3 NIEQSYVEVNENE----RFEALCRLLKN-KEFYGLVFCKTKRDTKELASMLRDI-------GFKAGAIHGDLSQSQREKV 70 (155)
T ss_dssp SSEEEEEECCGGG----HHHHHHHHHCS-TTCCEEEECSSHHHHHHHHHHHHHT-------TCCEEEECSSSCHHHHHHH
T ss_pred CeEEEEEEeChHH----HHHHHHHHHcc-CCCCEEEEECchHHHHHHHhhhccc-------ccccccccccchhhhhhhh
Confidence 4677777665444 45556666654 4678999999999999999999987 8899999999999999999
Q ss_pred cCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 468 FRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 468 ~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
++.|++|..+||||||++++|+|+|+|++||+ || .|-|..+|+||+||+||.|. |.|+.++
T Consensus 71 ~~~f~~~~~~ilv~T~~~~~Gid~~~v~~Vi~--------~d----------~p~~~~~y~qr~GR~gR~g~~g~~i~~~ 132 (155)
T d1hv8a2 71 IRLFKQKKIRILIATDVMSRGIDVNDLNCVIN--------YH----------LPQNPESYMHRIGRTGRAGKKGKAISII 132 (155)
T ss_dssp HHHHHTTSSSEEEECTTHHHHCCCSCCSEEEE--------SS----------CCSCHHHHHHHSTTTCCSSSCCEEEEEE
T ss_pred hhhhhcccceeeeehhHHhhhhhhccCcEEEE--------ec----------CCCCHHHHHHHHHhcCcCCCCceEEEEE
Confidence 99999999999999999999999999999999 77 78899999999999999986 9999998
|
| >d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme UvrB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Thermus thermophilus [TaxId: 274]
Probab=99.85 E-value=8.3e-22 Score=192.14 Aligned_cols=109 Identities=18% Similarity=0.217 Sum_probs=99.9
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.+++||||++++.++.+++.|++. |+.+..+||+|++.+|.++++.|++|+.+||||||++++|||+|+|++|
T Consensus 31 g~r~lvfc~t~~~~~~l~~~L~~~-------Gi~a~~~Hg~~~~~eR~~~l~~F~~G~~~vLVaT~v~~~GiDip~V~~V 103 (174)
T d1c4oa2 31 GERTLVTVLTVRMAEELTSFLVEH-------GIRARYLHHELDAFKRQALIRDLRLGHYDCLVGINLLREGLDIPEVSLV 103 (174)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTCCHHHHHHHHHHHHTTSCSEEEESCCCCTTCCCTTEEEE
T ss_pred CCcEEEEEcchhHHHHHHHHHHhc-------CCceEEEecccchHHHHHHHHHHHCCCeEEEEeeeeeeeeccCCCCcEE
Confidence 578999999999999999999987 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|+ ||+.... .|.|.++|.||+|||||.|+|.++.++
T Consensus 104 i~--------~~~~~~~-----~~~~~~~~iq~~GR~gR~~~g~~~~~~ 139 (174)
T d1c4oa2 104 AI--------LDADKEG-----FLRSERSLIQTIGRAARNARGEVWLYA 139 (174)
T ss_dssp EE--------TTTTSCS-----GGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EE--------ecccccc-----ccchhHHHHHHhhhhhhcCCCeeEEee
Confidence 99 5533211 467889999999999999999888776
|
| >d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme UvrB {Bacillus caldotenax [TaxId: 1395]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Nucleotide excision repair enzyme UvrB species: Bacillus caldotenax [TaxId: 1395]
Probab=99.85 E-value=5.1e-22 Score=196.43 Aligned_cols=109 Identities=21% Similarity=0.248 Sum_probs=97.4
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeEE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVYV 497 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~V 497 (858)
.+++|||++++++++.++..|++. |+.+..+||+|+|++|.++++.|++|+.+||||||+|+||||||+|++|
T Consensus 31 ~~~~iif~~~~~~~~~~~~~l~~~-------g~~~~~~hg~~~~~eR~~~l~~Fr~g~~~vLVaTdv~~rGiDip~v~~V 103 (181)
T d1t5la2 31 NERTLVTTLTKKMAEDLTDYLKEA-------GIKVAYLHSEIKTLERIEIIRDLRLGKYDVLVGINLLREGLDIPEVSLV 103 (181)
T ss_dssp TCEEEEECSSHHHHHHHHHHHHTT-------TCCEEEECSSCCHHHHHHHHHHHHHTSCSEEEESCCCSSSCCCTTEEEE
T ss_pred CCeEEEEeehhhhhHHHHHHHHhC-------CcceeEecCCccHHHHHHHHHHHHCCCCCEEEehhHHHccCCCCCCCEE
Confidence 568999999999999999999977 9999999999999999999999999999999999999999999999999
Q ss_pred EcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 498 IDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 498 Id~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
||+++|+. | .+-|..+|+||+|||||.|.|.++.++
T Consensus 104 I~~d~p~~-------~------~~~s~~~yi~R~GRagR~g~~~~~~~~ 139 (181)
T d1t5la2 104 AILDADKE-------G------FLRSERSLIQTIGRAARNANGHVIMYA 139 (181)
T ss_dssp EETTTTSC-------S------GGGSHHHHHHHHGGGTTSTTCEEEEEC
T ss_pred EEecCCcc-------c------ccccHHHHHHHHHhhccccCceeEeec
Confidence 99444332 1 235778999999999999987776655
|
| >d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.84 E-value=8.5e-22 Score=193.24 Aligned_cols=129 Identities=16% Similarity=0.338 Sum_probs=115.9
Q ss_pred eeEEEecCCccchHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhc
Q psy2470 389 VSVYYSNDPVVNYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVF 468 (858)
Q Consensus 389 v~~~~~~~~~~~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~ 468 (858)
++++|......+ +.+.+.+++.....+++||||++++.++.+++.|.+. ++.+..+||+|++++|..++
T Consensus 2 l~q~~v~~~~~~----K~~~L~~ll~~~~~~k~iIF~~~~~~~~~l~~~L~~~-------~~~~~~ihg~~~~~~r~~~l 70 (168)
T d1t5ia_ 2 LQQYYVKLKDNE----KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ-------NFPAIAIHRGMPQEERLSRY 70 (168)
T ss_dssp CEEEEEECCGGG----HHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCHHHHHHHH
T ss_pred cEEEEEEeChHH----HHHHHHHHHHhCCCCeEEEEEeeeecchhhhhhhccc-------cccccccccccchhhhhhhh
Confidence 467777665443 5566777777777889999999999999999999987 88999999999999999999
Q ss_pred CCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 469 RPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 469 ~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+.|++|..+|||||+++++|+|+|++++||+ || .|.+..+|+||+|||||.|. |.||.++
T Consensus 71 ~~F~~g~~~iLv~T~~~~~Gid~~~~~~vi~--------~~----------~p~~~~~yiqr~GR~gR~g~~g~~i~l~ 131 (168)
T d1t5ia_ 71 QQFKDFQRRILVATNLFGRGMDIERVNIAFN--------YD----------MPEDSDTYLHRVARAGRFGTKGLAITFV 131 (168)
T ss_dssp HHHHTTSCSEEEESSCCSTTCCGGGCSEEEE--------SS----------CCSSHHHHHHHHHHHTGGGCCCEEEEEE
T ss_pred hhhccccceeeeccccccchhhcccchhhhh--------hh----------cccchhhHhhhhhhcccCCCccEEEEEE
Confidence 9999999999999999999999999999999 77 68899999999999999987 9999988
|
| >d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.77 E-value=3.3e-19 Score=168.13 Aligned_cols=100 Identities=25% Similarity=0.243 Sum_probs=87.0
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..+++||||+|+++++.+++.|++. |+.+.++||+|+++ .|++|+.+||||||+++|||| |+|++
T Consensus 34 ~~~k~IVFc~t~~~ae~la~~L~~~-------G~~~~~~H~~~~~~-------~~~~~~~~vlvaTd~~~~GiD-~~v~~ 98 (138)
T d1jr6a_ 34 KGGRHLIFCHSKKKCDELAAKLVAL-------GINAVAYYRGLDVS-------VIPTNGDVVVVATDALMTGFT-GDFDS 98 (138)
T ss_dssp TTSCEEEECSCHHHHHHHHHHHHHH-------TCEEEEECTTCCSC-------CCTTSSCEEEEESSSSCSSSC-CCBSE
T ss_pred CCCCEEEEeCcHHHHHHHHHHHhcc-------ccchhhhhccchhh-------hhhhhhcceeehhHHHHhccc-cccce
Confidence 4688999999999999999999987 99999999999865 468899999999999999999 99999
Q ss_pred EEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 497 VIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
|||++. .|+ .|-+.++|.||+|||||..+|. |+++
T Consensus 99 Vi~~~~----~~~----------~P~~~~~y~qr~GR~gRg~~G~-~~~i 133 (138)
T d1jr6a_ 99 VIDCNT----SDG----------KPQDAVSRTQRRGRTGRGKPGI-YRFV 133 (138)
T ss_dssp EEECSE----ETT----------EECCHHHHHHHHTTBCSSSCEE-EEEC
T ss_pred EEEEEe----cCC----------CCCCHHHHHhHhccccCCCCcE-EEEE
Confidence 999542 133 6899999999999999943485 6665
|
| >d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.70 E-value=1.7e-17 Score=167.02 Aligned_cols=126 Identities=21% Similarity=0.168 Sum_probs=99.3
Q ss_pred HHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCC-CCc----------------------ceEEEeccCCCCHHHH
Q psy2470 408 TAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQR-EDL----------------------KLLILPMHGSLPNNEQ 464 (858)
Q Consensus 408 ~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~-~~~----------------------~~~v~~LHg~l~q~~r 464 (858)
.+.+.... .+++|||++|+++++.++..|.+..... ... ...|..+||+|++++|
T Consensus 32 l~~~~i~~--~~~~LVF~~sRk~~~~~A~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~GIa~hh~~l~~~~r 109 (201)
T d2p6ra4 32 LVEECVAE--NGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQR 109 (201)
T ss_dssp HHHHHHHT--TCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHH
T ss_pred HHHHHHHc--CCcEEEEeCCHHHHHHHHHHHHHHHHhhhchhHHHHHHHHhhhhhhhHHHHHHHhccHHHHHHHhhhhhH
Confidence 34444443 5789999999999999999987432110 000 0126678999999999
Q ss_pred HHhcCCCCCCcEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---Cce
Q psy2470 465 IKVFRPTPRAMRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGH 541 (858)
Q Consensus 465 ~~v~~~f~~g~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~ 541 (858)
..+.+.|++|..+|||||+.+++|||+|.+++||.. . ..||.. ..|.+.++|.||+|||||.| .|.
T Consensus 110 ~~ie~~f~~g~i~vlvaT~~l~~Gin~p~~~vvi~~-~---~~~d~~-------~~~~~~~~~~q~~GRAGR~g~~~~G~ 178 (201)
T d2p6ra4 110 RVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRS-L---YRFDGY-------SKRIKVSEYKQMAGRAGRPGMDERGE 178 (201)
T ss_dssp HHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECC-S---EEESSS-------EEECCHHHHHHHHTTBSCTTTCSCEE
T ss_pred HHHHHHHhCCCceEEEechHHHhhcCCCCceEEEec-c---eeccCC-------cCCCCHHHHHHHhcccCCCCCCCeeE
Confidence 999999999999999999999999999999999972 2 235521 15789999999999999988 499
Q ss_pred EEEeh
Q psy2470 542 VYRKN 546 (858)
Q Consensus 542 ~~rL~ 546 (858)
||.+.
T Consensus 179 ~~l~~ 183 (201)
T d2p6ra4 179 AIIIV 183 (201)
T ss_dssp EEEEC
T ss_pred EEEEe
Confidence 99888
|
| >d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=9e-18 Score=178.56 Aligned_cols=119 Identities=20% Similarity=0.265 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccC--------CCCHHHHHHhcCCCCCC
Q psy2470 403 QGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHG--------SLPNNEQIKVFRPTPRA 474 (858)
Q Consensus 403 ~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg--------~l~q~~r~~v~~~f~~g 474 (858)
+...+.+..++...+.+++|||+++++.++.+++.|.+. ++.+..+|| ++++.+|.++++.|++|
T Consensus 146 ~~l~~~l~~~~~~~~~~k~iiF~~~~~~~~~~~~~L~~~-------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~F~~g 218 (286)
T d1wp9a2 146 DKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKD-------GIKAKRFVGQASKENDRGLSQREQKLILDEFARG 218 (286)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHT-------TCCEEEECCSSCC-------CCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcEEEEeCcHHhHHHHHHHHHHc-------CCceEEeeccccccccchhchHHHHHHHHHHHcC
Confidence 344455555656667789999999999999999999876 566666644 68888999999999999
Q ss_pred cEEEEEecCcccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEeh
Q psy2470 475 MRKIVIATNIAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRKN 546 (858)
Q Consensus 475 ~~kVlvATdvAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL~ 546 (858)
+.+||||||++++|||+|++++||+ || .|-+...|+||+|||||.++|.+|.|+
T Consensus 219 ~~~vLv~T~~~~~Gld~~~~~~Vi~--------~d----------~~~~~~~~~Qr~GR~gR~~~~~~~~l~ 272 (286)
T d1wp9a2 219 EFNVLVATSVGEEGLDVPEVDLVVF--------YE----------PVPSAIRSIQRRGRTGRHMPGRVIILM 272 (286)
T ss_dssp SCSEEEECGGGGGGGGSTTCCEEEE--------SS----------CCHHHHHHHHHHTTSCSCCCSEEEEEE
T ss_pred CCcEEEEccceeccccCCCCCEEEE--------eC----------CCCCHHHHHHHHHhCCCCCCCEEEEEE
Confidence 9999999999999999999999999 77 567889999999999999999999998
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.64 E-value=2e-17 Score=169.01 Aligned_cols=166 Identities=8% Similarity=0.051 Sum_probs=108.3
Q ss_pred hhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCC
Q psy2470 158 GLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQ 237 (858)
Q Consensus 158 ~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~ 237 (858)
.+.+...+.|...|...+...+.+.+. + +.|+|||||| +||.+|.+.... .
T Consensus 31 ~L~~~g~~~pt~IQ~~aIp~il~g~dv--i------------------~~a~TGSGKT-----layllPil~~l~----~ 81 (222)
T d2j0sa1 31 GIYAYGFEKPSAIQQRAIKQIIKGRDV--I------------------AQSQSGTGKT-----ATFSISVLQCLD----I 81 (222)
T ss_dssp HHHHHTCCSCCHHHHHHHHHHHTTCCE--E------------------EECCTTSSHH-----HHHHHHHHHTCC----T
T ss_pred HHHHCCCCCCCHHHHHHHHHHHCCCCe--E------------------EEcCcchhhh-----hhhccccccccc----c
Confidence 334445556788888878877776332 2 3599999999 777777554221 1
Q ss_pred CCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-C-C
Q psy2470 238 PEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-S-G 309 (858)
Q Consensus 238 ~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~-~ 309 (858)
....++++|++||||+|.|+.+.+ +.++...+.. +...+++.. ....+++|+|+|||||.+ + .
T Consensus 82 -----~~~~~~~lil~PtreLa~Qi~~~~-~~l~~~~~i~---~~~~~g~~~~~~~~~~l~~~~~Ilv~TPgrl~~~~~~ 152 (222)
T d2j0sa1 82 -----QVRETQALILAPTRELAVQIQKGL-LALGDYMNVQ---CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR 152 (222)
T ss_dssp -----TSCSCCEEEECSSHHHHHHHHHHH-HHHTTTTTCC---EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT
T ss_pred -----cccCceeEEecchHHHHHHHHHHH-HHHhCcccee---EEEEeecccchhhHHHhccCCeEEeCCCCcHHhcccc
Confidence 123456899999999999997765 4455444444 332222221 112468999999999999 3 3
Q ss_pred CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhh
Q psy2470 310 VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYN 370 (858)
Q Consensus 310 ~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~ 370 (858)
....++.+.++ ++++ .+|...+.+.+. ..++++|+++||||+ +++++++.+.
T Consensus 153 ~~~~~~~l~~lVlDEaD~ll~----~~f~~~i~~I~~-----~l~~~~Q~ilfSAT~~~~v~~l~~~~l 212 (222)
T d2j0sa1 153 RSLRTRAIKMLVLDEADEMLN----KGFKEQIYDVYR-----YLPPATQVVLISATLPHEILEMTNKFM 212 (222)
T ss_dssp TSSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHT-----TSCTTCEEEEEESCCCHHHHTTGGGTC
T ss_pred cccccccceeeeecchhHhhh----cCcHHHHHHHHH-----hCCCCCEEEEEEEeCCHHHHHHHHHHC
Confidence 34455655555 8888 555544433333 667889999999999 4566776665
|
| >d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=99.63 E-value=1.1e-16 Score=165.79 Aligned_cols=103 Identities=17% Similarity=0.145 Sum_probs=89.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHH----------HHhcCCCCCCcEEEEEecCcccc
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQ----------IKVFRPTPRAMRKIVIATNIAET 487 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r----------~~v~~~f~~g~~kVlvATdvAer 487 (858)
.+++||||+++++++.+++.|++. |+.+..+||+++++.| ..+++.|++|+.+++|+|+++++
T Consensus 36 ggk~LVFcnSR~~aE~La~~L~~~-------Gi~a~~~Hgglsq~~R~~~gd~~i~~~~aLe~f~~G~~dvVVaT~~~a~ 108 (299)
T d1a1va2 36 GGRHLIFCHSKKKCDELAAKLVAL-------GINAVAYYRGLDVSVIPTSGDVVVVATDALMTGFTGDFDSVIDCNTCVT 108 (299)
T ss_dssp SSEEEEECSSHHHHHHHHHHHHHT-------TCCEEEECTTSCGGGSCSSSSEEEEECTTC---CCCCBSEEEECCEEEE
T ss_pred CCCEEEECCcHHHHHHHHHHHHHC-------CCCEEEEeCCchHHHHHhccchHHHHHHHHHHHhcCCCcEEEEEeehhc
Confidence 678999999999999999999987 8999999999999987 46788999999999999999999
Q ss_pred ---cCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCceEEEe
Q psy2470 488 ---SITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSGHVYRK 545 (858)
Q Consensus 488 ---gldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G~~~rL 545 (858)
++|++.|.+||+ |+ .|.|.++|+||+|||||..+|+++-+
T Consensus 109 g~~giDid~V~~VI~--------~d----------~P~SvesyIQRiGRTGRGr~G~~~~l 151 (299)
T d1a1va2 109 QTVDFSLDPTFTIET--------TT----------LPQDAVSRTQRRGRTGRGKPGIYRFV 151 (299)
T ss_dssp EEEECCCSSSCEEEE--------EE----------EECBHHHHHHHHTTBCSSSCEEEEES
T ss_pred cCCCCCCCcceEEEe--------CC----------CCCCHHHHHhhccccCCCCCceEEEE
Confidence 677888889999 77 89999999999999999444866543
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.62 E-value=1.1e-16 Score=161.59 Aligned_cols=170 Identities=9% Similarity=-0.030 Sum_probs=112.0
Q ss_pred hhhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCccccccccc
Q psy2470 156 LRGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYI 235 (858)
Q Consensus 156 ~~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l 235 (858)
++.+.+...+.|..+|...+...+.+.+. + +.|+|||||| +||.+|.+...
T Consensus 15 ~~~l~~~g~~~pt~iQ~~aip~il~g~dv--l------------------~~a~TGsGKT-----layllP~l~~~---- 65 (206)
T d1veca_ 15 LMGIFEMGWEKPSPIQEESIPIALSGRDI--L------------------ARAKNGTGKS-----GAYLIPLLERL---- 65 (206)
T ss_dssp HHHHHTTTCCSCCHHHHHHHHHHHTTCCE--E------------------EECCSSSTTH-----HHHHHHHHHHC----
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHHcCCCE--E------------------eeccCccccc-----cccccchhhcc----
Confidence 34445555666888888888888877432 2 3699999999 77777755421
Q ss_pred CCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEecc------ceeecceeEEEeecCcccc-C
Q psy2470 236 GQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKG------RMKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 236 ~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~------~~~~~~t~I~v~TpGrLl~-~ 308 (858)
. ..+..++++|++||||+|.|+.+.+.+......+.. +....+.. ......++|+|+|||||.+ +
T Consensus 66 ---~--~~~~~~~~lil~pt~el~~q~~~~~~~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~~~ivv~TPgrl~~~~ 137 (206)
T d1veca_ 66 ---D--LKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAK---VMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLI 137 (206)
T ss_dssp ---C--TTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCC---EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHH
T ss_pred ---c--ccccCcceEEEeecchhhHHHHHHHHHHhhcccCcc---cccccCCccHHHHHHHHHhccCeEEeCCccccccc
Confidence 1 112345789999999999999776644433322222 11111111 1112568999999999999 3
Q ss_pred -CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 309 -GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 309 -~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
.+...++++.++ ++++ .+|...+.+.+. ..++++|+++||||+ +++++++.+.+
T Consensus 138 ~~~~~~~~~l~~lVlDEaD~ll~----~~f~~~i~~I~~-----~~~~~~Q~~l~SAT~~~~v~~l~~~~l~ 200 (206)
T d1veca_ 138 KKGVAKVDHVQMIVLDEADKLLS----QDFVQIMEDIIL-----TLPKNRQILLYSATFPLSVQKFMNSHLE 200 (206)
T ss_dssp HTTCSCCTTCCEEEEETHHHHTS----TTTHHHHHHHHH-----HSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred cchhccccccceEEEeccccccc----cchHHHHHHHHH-----hCCCCCEEEEEEecCCHHHHHHHHHHCC
Confidence 333455655555 8998 666555554444 667889999999999 56778887763
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=3.6e-16 Score=158.04 Aligned_cols=169 Identities=14% Similarity=0.091 Sum_probs=107.3
Q ss_pred hhhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccC
Q psy2470 157 RGLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIG 236 (858)
Q Consensus 157 ~~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~ 236 (858)
+.+.+...+.|..+|...+...+.+.+. + +.|+|||||| .||.+|.+...
T Consensus 14 ~~l~~~g~~~pt~iQ~~aip~il~g~dv--l------------------~~A~TGsGKT-----la~~lp~l~~~----- 63 (207)
T d1t6na_ 14 RAIVDCGFEHPSEVQHECIPQAILGMDV--L------------------CQAKSGMGKT-----AVFVLATLQQL----- 63 (207)
T ss_dssp HHHHHTTCCCCCHHHHHHHHHHHTTCCE--E------------------EECCTTSCHH-----HHHHHHHHHHC-----
T ss_pred HHHHHCCCCCCCHHHHHHHHHHHcCCCe--E------------------EEeccccccc-----cccccceeeee-----
Confidence 3344455566888888888888877432 2 3599999999 77777755421
Q ss_pred CCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc-------eeecceeEEEeecCcccc-C
Q psy2470 237 QPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR-------MKILVSKIFKMSQGKPSD-S 308 (858)
Q Consensus 237 ~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~-------~~~~~t~I~v~TpGrLl~-~ 308 (858)
. ......+++|++||||+|.|+.+.+ +.++...+... ++...+... .....++|+|+|||||.+ +
T Consensus 64 --~--~~~~~~~~lil~PtreL~~qi~~~~-~~~~~~~~~~~--~~~~~g~~~~~~~~~~l~~~~~~ilI~TP~rl~~~~ 136 (207)
T d1t6na_ 64 --E--PVTGQVSVLVMCHTRELAFQISKEY-ERFSKYMPNVK--VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALA 136 (207)
T ss_dssp --C--CCTTCCCEEEECSCHHHHHHHHHHH-HHHTTTSTTCC--EEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHH
T ss_pred --c--ccCCCceEEEEeccchhhHHHHHHH-HHHHhhCCCce--eEEEeccccHHHHHHHHHhcCCCEEEeCcchhhhhc
Confidence 1 1123456899999999999997766 44443332210 111111111 112457999999999999 3
Q ss_pred CC-ccCCCcccEE------EecCCCCCc-hhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 309 GV-EPISQSYLVE------LSILAPGGQ-DVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 309 ~~-~~~L~~~~vl------R~l~~~~~~-d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
.. ...++++.++ ++++ . ++...+.+.+. ..++++|+++||||+ +++++++.|.+
T Consensus 137 ~~~~~~l~~l~~lVlDEaD~ll~----~~~~~~~i~~I~~-----~~~~~~Q~il~SAT~~~~v~~l~~~~l~ 200 (207)
T d1t6na_ 137 RNKSLNLKHIKHFILDECDKMLE----QLDMRRDVQEIFR-----MTPHEKQVMMFSATLSKEIRPVCRKFMQ 200 (207)
T ss_dssp HTTSSCCTTCCEEEEESHHHHHS----SHHHHHHHHHHHH-----TSCSSSEEEEEESCCCTTTHHHHHTTCS
T ss_pred cCCceeccccceeehhhhhhhhh----cCCcHHHHHHHHH-----hCCCCCEEEEEeeeCCHHHHHHHHHHCC
Confidence 32 3356666655 6666 3 33333322222 667889999999999 67888887763
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.58 E-value=3.8e-16 Score=159.03 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=104.9
Q ss_pred CCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCC
Q psy2470 165 SGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGD 244 (858)
Q Consensus 165 ~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~ 244 (858)
+.|..+|...+...+.+.+. -+.|+|||||| +||.+|.+.... ...
T Consensus 33 ~~pt~iQ~~aip~il~g~dv--------------------l~~a~TGsGKT-----layllp~l~~i~---------~~~ 78 (218)
T d2g9na1 33 EKPSAIQQRAILPCIKGYDV--------------------IAQAQSGTGKT-----ATFAISILQQIE---------LDL 78 (218)
T ss_dssp CSCCHHHHHHHHHHHHTCCE--------------------EEECCTTSSHH-----HHHHHHHHHHCC---------TTC
T ss_pred CCCCHHHHHHHHHHHcCCCE--------------------EEEcccchhhh-----hhhhhhhhheec---------ccc
Confidence 45777777777777766432 24699999999 666677554221 112
Q ss_pred CccCEEEccchHHHHHHHHHHHHHHhCCcCccEeee-eeEEEeccc---eeecceeEEEeecCcccc-C-CCccCCCccc
Q psy2470 245 KARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYIS-RGYMFRKGR---MKILVSKIFKMSQGKPSD-S-GVEPISQSYL 318 (858)
Q Consensus 245 ~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~-vG~~vr~~~---~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~ 318 (858)
...++||++||||+|.|+.+.+.+.. ...+..... .|.....+. .....++|+|+|||||.+ + .+...++.+.
T Consensus 79 ~~~~alil~Pt~eL~~Q~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvV~TP~rl~~~l~~~~~~~~~l~ 157 (218)
T d2g9na1 79 KATQALVLAPTRELAQQIQKVVMALG-DYMGASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIK 157 (218)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHH-TTTTCCEEEECC--CCCSTTTSSSSCCCSEEEECHHHHHHHHHTTSSCSTTCC
T ss_pred cCccEEEEcccchhhhhHHHHHhhhc-cccceeEEeeecccchhHHHHHHhcCCCEEEEeCChhHHHHHhcCCcccccce
Confidence 34578999999999999987664432 233333111 222211111 112457999999999999 3 3344556555
Q ss_pred EE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 319 VE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 319 vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
++ ++++ .+|...+...+. ..+++.|+++||||+ +++.+++.|..
T Consensus 158 ~lVlDEaD~ll~----~~f~~~~~~Il~-----~~~~~~Q~il~SAT~~~~v~~~~~~~l~ 209 (218)
T d2g9na1 158 MFVLDEADEMLS----RGFKDQIYDIFQ-----KLNSNTQVVLLSATMPSDVLEVTKKFMR 209 (218)
T ss_dssp EEEEESHHHHHH----TTCHHHHHHHHH-----HSCTTCEEEEEESCCCHHHHHHHHHHCS
T ss_pred EEEeeecchhhc----CchHHHHHHHHH-----hCCCCCeEEEEEecCCHHHHHHHHHHCC
Confidence 55 8888 666555554444 667889999999999 56778876663
|
| >d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase VlgB species: Flatworm (Dugesia japonica) [TaxId: 6161]
Probab=99.56 E-value=6.6e-16 Score=159.45 Aligned_cols=181 Identities=7% Similarity=-0.089 Sum_probs=107.4
Q ss_pred cccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCC
Q psy2470 160 CDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPE 239 (858)
Q Consensus 160 ~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~ 239 (858)
.++..+.|..+|...+...+.+.+. -+.|+|||||| +||.+|.+.....--....
T Consensus 37 ~~~g~~~pt~iQ~~~ip~il~g~dv--------------------vi~a~TGsGKT-----layllp~l~~l~~~~~~~~ 91 (238)
T d1wrba1 37 LLASYQRPTPIQKNAIPAILEHRDI--------------------MACAQTGSGKT-----AAFLIPIINHLVCQDLNQQ 91 (238)
T ss_dssp TTTTCCSCCHHHHHHHHHHHTTCCE--------------------EEECCTTSSHH-----HHHHHHHHHHHHTTCC---
T ss_pred HHCCCCCCCHHHHHHhhhhhCCCCE--------------------EEECCCCCCcc-----eeeHHHHHHHHHhcccccc
Confidence 3345566777887777777766432 24699999999 7778886654321111111
Q ss_pred CCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEec---cceeecceeEEEeecCcccc-C-CCccCC
Q psy2470 240 MGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRK---GRMKILVSKIFKMSQGKPSD-S-GVEPIS 314 (858)
Q Consensus 240 ~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~---~~~~~~~t~I~v~TpGrLl~-~-~~~~~L 314 (858)
.......++++|++||||+|.|+.+.+. .++...+.....+..+... ......+++|+|+|||+|.+ + .+...+
T Consensus 92 ~~~~~~~~~alil~pt~el~~q~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ivV~TP~~l~~~~~~~~~~l 170 (238)
T d1wrba1 92 RYSKTAYPKCLILAPTRELAIQILSESQ-KFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKNKISL 170 (238)
T ss_dssp ---CCBCCSEEEECSSHHHHHHHHHHHH-HHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTTSBCC
T ss_pred cccCCCCceEEEeccchhhhcchheeee-ecccCCCcEEEEEeccchhhHHHhhcccCCceeecCHHHHHhHHccCceec
Confidence 1112334679999999999999976553 3444444331111111111 11222468999999999999 3 333446
Q ss_pred CcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 315 QSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 315 ~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
..+.++ ++++ .+|...+.+.+. .+......++|+++||||+ +++.+++.|.+
T Consensus 171 ~~v~~lViDEaD~ll~----~~f~~~i~~Il~-~~~~~~~~~~Q~il~SAT~~~~v~~l~~~~~~ 230 (238)
T d1wrba1 171 EFCKYIVLDEADRMLD----MGFEPQIRKIIE-ESNMPSGINRQTLMFSATFPKEIQKLAADFLY 230 (238)
T ss_dssp TTCCEEEEETHHHHHH----TTCHHHHHHHHH-SSCCCCGGGCEEEEEESSCCHHHHHHHHHHCS
T ss_pred cccceeeeehhhhhhh----hccHHHHHHHHH-HhcCCCCCCCEEEEEeeeCCHHHHHHHHHHCC
Confidence 655544 7777 555444443333 2211123367999999999 57888887773
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.54 E-value=1.6e-15 Score=153.65 Aligned_cols=167 Identities=13% Similarity=0.090 Sum_probs=107.0
Q ss_pred ccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCC
Q psy2470 161 DNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEM 240 (858)
Q Consensus 161 ~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~ 240 (858)
+...+.|.++|...+...+.+.+. + +.|+|||||| .||.+|.+... .
T Consensus 27 ~~g~~~pt~iQ~~aip~il~g~dv--l------------------~~a~TGsGKT-----~a~~lp~i~~l-------~- 73 (212)
T d1qdea_ 27 GYGFEEPSAIQQRAIMPIIEGHDV--L------------------AQAQSGTGKT-----GTFSIAALQRI-------D- 73 (212)
T ss_dssp HHTCCSCCHHHHHHHHHHHTTCCE--E------------------EECCTTSSHH-----HHHHHHHHHHC-------C-
T ss_pred HCCCCCCCHHHHHHHHHHHcCCCE--E------------------eecccccchh-----hhhHhhhHhhh-------h-
Confidence 344556777777777777766432 2 3599999999 77777755532 1
Q ss_pred CCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccE-eeeeeE-EEeccceeecceeEEEeecCcccc-C-CCccCCCc
Q psy2470 241 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFE-YISRGY-MFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQS 316 (858)
Q Consensus 241 g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~-~~~vG~-~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~ 316 (858)
.....++++|++|||++|.|+...+... +...... ....|. ....+....++++|+|+|||++.+ . .+...+++
T Consensus 74 -~~~~~~~~lil~pt~el~~q~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~IvI~TP~~l~~~~~~~~~~l~~ 151 (212)
T d1qdea_ 74 -TSVKAPQALMLAPTRELALQIQKVVMAL-AFHMDIKVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQRRRFRTDK 151 (212)
T ss_dssp -TTCCSCCEEEECSSHHHHHHHHHHHHHH-TTTSCCCEEEECC----------CTTCSEEEECHHHHHHHHHTTSSCCTT
T ss_pred -ccCCCcceEEEcccHHHhhhhhhhhccc-ccccccceeeEeeccchhHHHHHhcCCcEEEECCCccccccccCceecCc
Confidence 1123457899999999999998877443 3222222 111111 111111222468999999999999 3 34446666
Q ss_pred ccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 317 YLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 317 ~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
..++ ++++ .+|...+.+.+. ..+++.|+++||||+ +++.+++.|.+
T Consensus 152 l~~lVlDEad~lld----~~f~~~v~~I~~-----~~~~~~Q~vl~SAT~~~~v~~l~~~~l~ 205 (212)
T d1qdea_ 152 IKMFILDEADEMLS----SGFKEQIYQIFT-----LLPPTTQVVLLSATMPNDVLEVTTKFMR 205 (212)
T ss_dssp CCEEEEETHHHHHH----TTCHHHHHHHHH-----HSCTTCEEEEEESSCCHHHHHHHHHHCS
T ss_pred ceEEeehhhhhhcc----cchHHHHHHHHH-----hCCCCCeEEEEEeeCCHHHHHHHHHHCC
Confidence 6655 7888 556555554444 667889999999999 46888888774
|
| >d1gm5a4 c.37.1.19 (A:550-755) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.50 E-value=1.1e-15 Score=153.00 Aligned_cols=112 Identities=19% Similarity=0.221 Sum_probs=81.8
Q ss_pred CCCCEEEEcCCHHHHHHHH-----HHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCC
Q psy2470 417 PVGDILAFVIGLEQIEHII-----GILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITI 491 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~-----~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldI 491 (858)
..+++-+.||-.++.+.+. +....... .-.|++.+..+||+|++++|.+++++|++|+.+|||||+|+|+||||
T Consensus 28 ~g~QvyvVcP~Ieese~~~~~~~~e~~~~l~~-~~~p~~~v~~lHG~m~~~eke~~m~~F~~g~~~iLVaTtViE~GIDi 106 (206)
T d1gm5a4 28 RGGQAFIVYPLIEESDKLNVKSAVEMYEYLSK-EVFPEFKLGLMHGRLSQEEKDRVMLEFAEGRYDILVSTTVIEVGIDV 106 (206)
T ss_dssp TSCCBCCBCCCC--------CHHHHHHHSGGG-SCC---CBCCCCSSSCCSCSHHHHHHHTTTSSSBCCCSSCCCSCSCC
T ss_pred cCCCEEEEEeeecccccccchhhHHHHHHHHH-hcCCCCeEEEEeecccHHHHHHHHHHHHCCCEEEEEEehhhhccccc
Confidence 3678888898866665432 11111100 11357889999999999999999999999999999999999999999
Q ss_pred CCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 492 PGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 492 p~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|++++||. ||+.. -.-+++-|+.||+||.|. |.||-++
T Consensus 107 p~a~~iii--------~~a~~---------fglsqlhQlrGRvGR~~~~~~~~l~~ 145 (206)
T d1gm5a4 107 PRANVMVI--------ENPER---------FGLAQLHQLRGRVGRGGQEAYCFLVV 145 (206)
T ss_dssp TTCCEEEB--------CSCSS---------SCTTHHHHHHHTSCCSSTTCEEECCC
T ss_pred cCCcEEEE--------EccCC---------ccHHHHHhhhhheeeccccceeEeee
Confidence 99999998 66332 134556688999999987 9999988
|
| >d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.48 E-value=1.1e-16 Score=166.61 Aligned_cols=102 Identities=13% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEec----Cc
Q psy2470 409 AIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIAT----NI 484 (858)
Q Consensus 409 l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvAT----dv 484 (858)
+..++... .+++|||++|++.++.+++.|+.. +||++++++|.++++.|++|..+||||| |+
T Consensus 17 l~~~l~~~-~~~~iif~~~~~~~~~l~~~l~~~-------------~hg~~~~~~R~~~~~~f~~g~~~vLVaT~a~~~v 82 (248)
T d1gkub2 17 LSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-------------FRIGIVTATKKGDYEKFVEGEIDHLIGTAHYYGT 82 (248)
T ss_dssp THHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-------------SCEEECTTSSSHHHHHHHHTSCSEEEEECC----
T ss_pred HHHHHHHh-CCCEEEEECCHHHHHHHHHHHHHh-------------ccCCCCHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 44555444 356999999999999999988632 6999999999999999999999999999 99
Q ss_pred ccccCCCCC-eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 485 AETSITIPG-IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 485 AergldIp~-V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
|+||||+|+ |++||+ || .| .|.||+|||||.|. |.++.++
T Consensus 83 ~~rGlDip~~v~~VI~--------~d----------~P----~~~~r~gR~~R~g~~~~~~~~~ 124 (248)
T d1gkub2 83 LVRGLDLPERIRFAVF--------VG----------CP----SFRVTIEDIDSLSPQMVKLLAY 124 (248)
T ss_dssp --CCSCCTTTCCEEEE--------ES----------CC----EEEEECSCGGGSCHHHHHHHHT
T ss_pred hhhccCccccccEEEE--------eC----------CC----cchhhhhhhhccCcceEeeeec
Confidence 999999996 999999 55 22 25589999999987 7777655
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.48 E-value=6.7e-15 Score=148.64 Aligned_cols=171 Identities=8% Similarity=0.044 Sum_probs=105.7
Q ss_pred ccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCC
Q psy2470 161 DNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEM 240 (858)
Q Consensus 161 ~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~ 240 (858)
+...+.|..+|...+...+++... +-+.|+|||||| .++.+|..... ..
T Consensus 21 ~~g~~~pt~iQ~~~ip~~l~g~~d-------------------~iv~a~TGsGKT-----~~~~l~~~~~~-------~~ 69 (208)
T d1hv8a1 21 NKGFEKPTDIQMKVIPLFLNDEYN-------------------IVAQARTGSGKT-----ASFAIPLIELV-------NE 69 (208)
T ss_dssp HHTCCSCCHHHHHHHHHHHHTCSE-------------------EEEECCSSSSHH-----HHHHHHHHHHS-------CS
T ss_pred HCCCCCCCHHHHHHHHHHHcCCCC-------------------eeeechhccccc-----ceeeccccccc-------cc
Confidence 334445666666666555554221 123599999999 55555543311 11
Q ss_pred CCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce-----eecceeEEEeecCcccc-C-CCccC
Q psy2470 241 GVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM-----KILVSKIFKMSQGKPSD-S-GVEPI 313 (858)
Q Consensus 241 g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~-----~~~~t~I~v~TpGrLl~-~-~~~~~ 313 (858)
+..++++|++||+++|.|+.+.+. .++...+.. ++...+..+. ..++++|+|+|||+|++ + .+...
T Consensus 70 ---~~~~~~lil~pt~~l~~q~~~~~~-~~~~~~~~~---v~~~~g~~~~~~~~~~l~~~~IlV~TP~~l~~~l~~~~~~ 142 (208)
T d1hv8a1 70 ---NNGIEAIILTPTRELAIQVADEIE-SLKGNKNLK---IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINRGTLN 142 (208)
T ss_dssp ---SSSCCEEEECSCHHHHHHHHHHHH-HHHCSSCCC---EEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHTTCSC
T ss_pred ---ccCcceEEEeeccccchhhhhhhh-hhcccCCeE---EEEeeCCCChHHHHHhcCCCCEEEEChHHHHHHHHcCCCC
Confidence 233578999999999999977664 343333333 2222222111 11468999999999999 3 33345
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccC--HHHHHHHhhcccCCCCcEEEe
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVD--AEEICQFYNISASSNATILSV 382 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~--~~~~~~~~~~~~~~~~~~i~v 382 (858)
++++.++ ++++ .++...+.+.+. ..+++.|+++||||++ +.++++.|.+ ++..+.+
T Consensus 143 ~~~l~~lViDEad~l~~----~~~~~~i~~I~~-----~~~~~~Q~i~~SAT~~~~v~~~~~~~l~----~~~~I~~ 206 (208)
T d1hv8a1 143 LKNVKYFILDEADEMLN----MGFIKDVEKILN-----ACNKDKRILLFSATMPREILNLAKKYMG----DYSFIKA 206 (208)
T ss_dssp TTSCCEEEEETHHHHHT----TTTHHHHHHHHH-----TSCSSCEEEEECSSCCHHHHHHHHHHCC----SEEEEEC
T ss_pred cccCcEEEEEChHHhhc----CCChHHHHHHHH-----hCCCCCeEEEEEccCCHHHHHHHHHHCC----CCeEEEE
Confidence 6766555 7887 666554544444 6678899999999994 5678876663 4555543
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.39 E-value=7.7e-14 Score=140.50 Aligned_cols=167 Identities=11% Similarity=0.005 Sum_probs=107.1
Q ss_pred hhcccccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCC
Q psy2470 158 GLCDNVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQ 237 (858)
Q Consensus 158 ~~~~~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~ 237 (858)
++.+...+.|..+|...+...+.+.+ .+ +.|+|||||| +||.+|.+.....
T Consensus 15 ~L~~~g~~~pt~iQ~~aip~il~g~d--vi------------------~~a~tGsGKT-----lay~lp~i~~~~~---- 65 (206)
T d1s2ma1 15 GIFEAGFEKPSPIQEEAIPVAITGRD--IL------------------ARAKNGTGKT-----AAFVIPTLEKVKP---- 65 (206)
T ss_dssp HHHHTTCCSCCHHHHHHHHHHHHTCC--EE------------------EECCTTSCHH-----HHHHHHHHHHCCT----
T ss_pred HHHHCCCCCCCHHHHHHHHHHHcCCC--EE------------------EecCCcchhh-----hhhcccccccccc----
Confidence 34444455677888888887777743 22 3599999999 6667775542111
Q ss_pred CCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccc------eeecceeEEEeecCcccc-CC-
Q psy2470 238 PEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSD-SG- 309 (858)
Q Consensus 238 ~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~-~~- 309 (858)
.+...+++++.|+++++.+..... ...+...+.. +....+... .....++|+|+|||+|.+ +.
T Consensus 66 -----~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~---~~~~~g~~~~~~~~~~l~~~~~Ili~TP~~l~~~l~~ 136 (206)
T d1s2ma1 66 -----KLNKIQALIMVPTRELALQTSQVV-RTLGKHCGIS---CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR 136 (206)
T ss_dssp -----TSCSCCEEEECSSHHHHHHHHHHH-HHHTTTTTCC---EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT
T ss_pred -----ccccccceeeccchhhhhhhhhhh-hhcccccCee---EEeecCccchhhHHHHhcccceEEEECCccccccccc
Confidence 123345799999999999886655 3444444444 322222111 112568999999999999 32
Q ss_pred CccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhc
Q psy2470 310 VEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNI 371 (858)
Q Consensus 310 ~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~ 371 (858)
+...++++.++ ++++ .+|...+...+ ...++++|+++||||+ ++..+++.|.+
T Consensus 137 ~~~~l~~l~~lV~DEaD~l~~----~~f~~~v~~I~-----~~l~~~~Q~il~SATl~~~v~~~~~~~l~ 197 (206)
T d1s2ma1 137 KVADLSDCSLFIMDEADKMLS----RDFKTIIEQIL-----SFLPPTHQSLLFSATFPLTVKEFMVKHLH 197 (206)
T ss_dssp TCSCCTTCCEEEEESHHHHSS----HHHHHHHHHHH-----TTSCSSCEEEEEESCCCHHHHHHHHHHCS
T ss_pred ceeecccceEEEeechhhhhh----hhhHHHHHHHH-----HhCCCCCEEEEEEEeCCHHHHHHHHHHCC
Confidence 33356655555 7888 54444433333 3677889999999999 46778877763
|
| >d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.39 E-value=3.1e-14 Score=142.72 Aligned_cols=107 Identities=16% Similarity=0.187 Sum_probs=92.8
Q ss_pred HHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC
Q psy2470 404 GVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN 483 (858)
Q Consensus 404 ~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd 483 (858)
.+++.+.+++...+..++|||+.+.+.++.+++.|. +..+||++++++|..+++.|++|+.+|||||+
T Consensus 79 ~K~~~l~~ll~~~~~~k~lvf~~~~~~~~~l~~~l~------------~~~i~g~~~~~~R~~~l~~F~~~~~~vLv~~~ 146 (200)
T d2fwra1 79 NKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL------------IPAITHRTSREEREEILEGFRTGRFRAIVSSQ 146 (200)
T ss_dssp HHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT------------CCBCCSSSCSHHHHTHHHHHHHSSCSBCBCSS
T ss_pred HHHHHHHHHHHhCCCCcEEEEeCcHHHHHHHHhhcC------------cceeeCCCCHHHHHHHHHHhhcCCeeeeeecc
Confidence 345667777777767899999999999998877663 22479999999999999999999999999999
Q ss_pred cccccCCCCCeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCCc
Q psy2470 484 IAETSITIPGIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRSG 540 (858)
Q Consensus 484 vAergldIp~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~G 540 (858)
+++.|+|+|++++||. |+ .|-|...+.||+||++|.|+|
T Consensus 147 ~~~~Gidl~~~~~vi~--------~~----------~~~s~~~~~Q~iGR~~R~~~~ 185 (200)
T d2fwra1 147 VLDEGIDVPDANVGVI--------MS----------GSGSAREYIQRLGRILRPSKG 185 (200)
T ss_dssp CCCSSSCSCCBSEEEE--------EC----------CSSCCHHHHHHHHHSBCCCTT
T ss_pred hhhcccCCCCCCEEEE--------eC----------CCCCHHHHHHHHHhcCCCCCC
Confidence 9999999999999999 66 466788999999999999875
|
| >d2eyqa5 c.37.1.19 (A:779-989) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=1.4e-13 Score=136.37 Aligned_cols=107 Identities=21% Similarity=0.203 Sum_probs=94.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCcccccCCCCCeeE
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAETSITIPGIVY 496 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAergldIp~V~~ 496 (858)
..|++-+.||..++++.+.+.+.+. .+++++..+||.|+++++.+++..|++|+.+|||||.|.|.|||||+.+.
T Consensus 30 rGgQvy~V~p~I~~~e~~~~~l~~~-----~p~~~i~~lHGkm~~~eke~im~~F~~g~~~ILv~TtvIEvGiDvpnA~~ 104 (211)
T d2eyqa5 30 RGGQVYYLYNDVENIQKAAERLAEL-----VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANT 104 (211)
T ss_dssp TTCEEEEECCCSSCHHHHHHHHHHH-----CTTSCEEECCSSCCHHHHHHHHHHHHTTSCCEEEESSTTGGGSCCTTEEE
T ss_pred cCCeEEEEEcCccchhhHHHHHHHh-----CCceEEEEEEeccCHHHHHHHHHHHHcCCcceEEEehhhhhccCCCCCcE
Confidence 4789999999999999999999976 35889999999999999999999999999999999999999999999998
Q ss_pred EEcCCCccceeccCC-CCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 497 VIDPGFVKARWFNPN-TLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 497 VId~g~~k~~~yd~~-~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
+|- +|.. -| -++.-|-.||.||.+. |.||-++
T Consensus 105 iiI--------~~a~rfG----------LaQLhQLRGRVGR~~~~s~c~l~~ 138 (211)
T d2eyqa5 105 III--------ERADHFG----------LAQLHQLRGRVGRSHHQAYAWLLT 138 (211)
T ss_dssp EEE--------TTTTSSC----------HHHHHHHHTTCCBTTBCEEEEEEE
T ss_pred EEE--------ecchhcc----------ccccccccceeeecCccceEEEEe
Confidence 884 3322 23 3556799999999887 9999987
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=99.33 E-value=2.4e-13 Score=136.91 Aligned_cols=173 Identities=14% Similarity=0.029 Sum_probs=105.8
Q ss_pred cccCCCCcccccccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCC
Q psy2470 162 NVDSGPETFHDHEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMG 241 (858)
Q Consensus 162 ~~~~~~~~f~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g 241 (858)
...+.|..+|...+...+.+.+. + +.|+|||||| +||.+|.+.....
T Consensus 19 ~g~~~pt~iQ~~aip~~l~G~dv--i------------------i~a~TGSGKT-----layllp~l~~~~~-------- 65 (209)
T d1q0ua_ 19 LRFYKPTEIQERIIPGALRGESM--V------------------GQSQTGTGKT-----HAYLLPIMEKIKP-------- 65 (209)
T ss_dssp TTCCSCCHHHHHHHHHHHHTCCE--E------------------EECCSSHHHH-----HHHHHHHHHHCCT--------
T ss_pred CCCCCCCHHHHHHHHHHHCCCCe--E------------------eecccccccc-----eeeeeeecccccc--------
Confidence 33456888888888888877432 2 4699999999 6666664442111
Q ss_pred CCCCccCEEEccchHHHHHHHHHHHHHHhCC---cCccEe-eeeeEEEe--ccceeecceeEEEeecCcccc-CC-CccC
Q psy2470 242 VGDKARPTIVRSSIDVACSCTVVEFLTEMGC---RMDFEY-ISRGYMFR--KGRMKILVSKIFKMSQGKPSD-SG-VEPI 313 (858)
Q Consensus 242 ~g~~~~~~LVl~PtR~la~qva~~v~~e~g~---~~g~~~-~~vG~~vr--~~~~~~~~t~I~v~TpGrLl~-~~-~~~~ 313 (858)
.......+++.|+++.+.+.+..+...... ...... ...|+... .......+++|+|+|||++++ .. ....
T Consensus 66 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ilv~TP~~l~~~~~~~~~~ 144 (209)
T d1q0ua_ 66 -ERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALD 144 (209)
T ss_dssp -TSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHTTCCC
T ss_pred -ccccccccccccccchhHHHHHHHHhhhccccccccccccccccchhhHHHHHHhccCceEEEecCchhhhhhhhhccc
Confidence 122345689999999998887766443222 111110 00111111 111223568999999999999 33 3345
Q ss_pred CCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc--CHHHHHHHhhcccCCCCcEEE
Q psy2470 314 SQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV--DAEEICQFYNISASSNATILS 381 (858)
Q Consensus 314 L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~--~~~~~~~~~~~~~~~~~~~i~ 381 (858)
++++.++ ++++ .+|...+...+. ..+++.|+++||||+ +++++++.|.+ +|..+.
T Consensus 145 ~~~l~~lViDEad~ll~----~~f~~~v~~I~~-----~~~~~~Q~il~SATl~~~v~~l~~~~l~----~p~~i~ 207 (209)
T d1q0ua_ 145 VHTAHILVVDEADLMLD----MGFITDVDQIAA-----RMPKDLQMLVFSATIPEKLKPFLKKYME----NPTFVH 207 (209)
T ss_dssp GGGCCEEEECSHHHHHH----TTCHHHHHHHHH-----TSCTTCEEEEEESCCCGGGHHHHHHHCS----SCEEEE
T ss_pred cccceEEEEeecccccc----cccHHHHHHHHH-----HCCCCCEEEEEEccCCHHHHHHHHHHCC----CCEEEE
Confidence 5555544 6777 544444443333 678899999999999 66788876663 454444
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.76 E-value=2e-09 Score=107.02 Aligned_cols=138 Identities=12% Similarity=0.048 Sum_probs=80.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCc--CccEeeeeeE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCR--MDFEYISRGY 283 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~--~g~~~~~vG~ 283 (858)
+.|+||||||.+ +.++.+. .+ . ....+++++|+++++.|..+++.+..+.. ++.. .|.
T Consensus 45 l~apTGsGKT~~-----a~l~i~~----~~---~-----~~~~vl~l~P~~~L~~q~~~~~~~~~~~~~~v~~~---~~~ 104 (202)
T d2p6ra3 45 LAMPTAAGKTLL-----AEMAMVR----EA---I-----KGGKSLYVVPLRALAGEKYESFKKWEKIGLRIGIS---TGD 104 (202)
T ss_dssp EECSSHHHHHHH-----HHHHHHH----HH---H-----TTCCEEEEESSHHHHHHHHHHHTTTTTTTCCEEEE---CSS
T ss_pred EEcCCCCchhHH-----HHHHHHH----Hh---h-----ccCcceeecccHHHHHHHHHHHHHHhhccccceee---ccC
Confidence 469999999922 2222111 11 0 11257999999999999988874332221 1111 221
Q ss_pred EEeccceeecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEE
Q psy2470 284 MFRKGRMKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLII 355 (858)
Q Consensus 284 ~vr~~~~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il 355 (858)
............|+++||..+.. . .....+..++.| +..+ +.-......++..+. ..+++.|+|+
T Consensus 105 -~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~ii~DE~h~~~~-~~r~~~~~~~l~~i~-----~~~~~~~~l~ 177 (202)
T d2p6ra3 105 -YESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLLDS-EKRGATLEILVTKMR-----RMNKALRVIG 177 (202)
T ss_dssp -CBCCSSCSTTCSEEEEEHHHHHHHHHTTCSGGGGCCEEEETTGGGGGC-TTTHHHHHHHHHHHH-----HHCTTCEEEE
T ss_pred -cccccccccccceeeeccHHHHHHHhccchhhhhhhhccccHHHHhcc-cccchHHHHHHHHHH-----hcCCCCcEEE
Confidence 11111222457899999998887 3 333455566555 3322 110111233444444 4466789999
Q ss_pred Eeccc-CHHHHHHHhh
Q psy2470 356 SSATV-DAEEICQFYN 370 (858)
Q Consensus 356 ~SAT~-~~~~~~~~~~ 370 (858)
||||+ +.+.|++|++
T Consensus 178 lSATl~n~~~~~~~l~ 193 (202)
T d2p6ra3 178 LSATAPNVTEIAEWLD 193 (202)
T ss_dssp EECCCTTHHHHHHHTT
T ss_pred EcCCCCcHHHHHHHcC
Confidence 99998 8999999997
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=98.75 E-value=2.6e-09 Score=108.88 Aligned_cols=82 Identities=10% Similarity=-0.007 Sum_probs=51.2
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHH---HhCCcCccEeeeee
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLT---EMGCRMDFEYISRG 282 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~---e~g~~~g~~~~~vG 282 (858)
++|+||||||.+++.++ +.. . .. ..++|++.||++|+.|.++++.+ .+|..++.. ++
T Consensus 63 i~apTGsGKT~~~~~~~-----~~~----~---~~-----~~rvliv~Pt~~La~Q~~~~l~~~~~~~~~~~~~~---~~ 122 (237)
T d1gkub1 63 ATAPTGVGKTSFGLAMS-----LFL----A---LK-----GKRCYVIFPTSLLVIQAAETIRKYAEKAGVGTENL---IG 122 (237)
T ss_dssp CCCCBTSCSHHHHHHHH-----HHH----H---TT-----SCCEEEEESCHHHHHHHHHHHHHHHTTTCCSGGGS---EE
T ss_pred EEecCCChHHHHHHHHH-----HHH----H---Hh-----cCeEEEEeccHHHHHHHHHHHHHHHHHcCCceEEE---Ee
Confidence 46999999994433332 211 0 11 13589999999999999887743 355555554 33
Q ss_pred EEEeccce--------eecceeEEEeecCcccc
Q psy2470 283 YMFRKGRM--------KILVSKIFKMSQGKPSD 307 (858)
Q Consensus 283 ~~vr~~~~--------~~~~t~I~v~TpGrLl~ 307 (858)
........ ....++|+|+||++|.+
T Consensus 123 ~~~~~~~~~~~~~~l~~~~~~~Ilv~Tp~~l~~ 155 (237)
T d1gkub1 123 YYHGRIPKREKENFMQNLRNFKIVITTTQFLSK 155 (237)
T ss_dssp ECCSSCCSHHHHHHHHSGGGCSEEEEEHHHHHH
T ss_pred eeecccchhhhhhhhccccccceeccChHHHHH
Confidence 22221111 11346899999999987
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=98.60 E-value=2.1e-08 Score=92.78 Aligned_cols=119 Identities=13% Similarity=-0.038 Sum_probs=74.7
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+|||||| +++|.+.. + ....++++.||++++.|.++++.+.++...+.. .+
T Consensus 13 l~apTGsGKT-------~~~~~~~~--------~-----~~~~vli~~P~~~l~~q~~~~~~~~~~~~~~~~---~~--- 66 (136)
T d1a1va1 13 LHAPTGSGKS-------TKVPAAYA--------A-----QGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIR---TG--- 66 (136)
T ss_dssp EECCTTSCTT-------THHHHHHH--------T-----TTCCEEEEESCHHHHHHHHHHHHHHHSCCCEEE---CS---
T ss_pred EEeCCCCCHH-------HHHHHHHH--------H-----cCCcEEEEcChHHHHHHHHHHHHHHhhcccccc---cc---
Confidence 3799999999 22332221 1 112589999999999999999988887665444 22
Q ss_pred eccceeecceeEEEeecCccccCCCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV 360 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~ 360 (858)
.. .......++++|.+.+... .+..++++++| ..++ .+....+.+.+. .+ ..+++.++++||||.
T Consensus 67 -~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~vIiDE~H~~~----~~~~~~~~~~l~-~~--~~~~~~~~l~~TATP 136 (136)
T d1a1va1 67 -VR-TITTGSPITYSTYGKFLAD-GGCSGGAYDIIICDECHSTD----ATSILGIGTVLD-QA--ETAGARLVVLATATP 136 (136)
T ss_dssp -SC-EECCCCSEEEEEHHHHHHT-TGGGGCCCSEEEEETTTCCS----HHHHHHHHHHHH-HT--TTTTCSEEEEEESSC
T ss_pred -cc-ccccccceEEEeeeeeccc-cchhhhcCCEEEEecccccC----HHHHHHHHHHHH-HH--HHCCCCcEEEEeCCC
Confidence 11 1223467899999987762 23456677766 4444 333333322222 22 345678999999994
|
| >d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio rerio) [TaxId: 7955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Rad54-like, Rad54L species: Zebra fish (Danio rerio) [TaxId: 7955]
Probab=98.53 E-value=9.3e-08 Score=102.60 Aligned_cols=106 Identities=10% Similarity=0.163 Sum_probs=90.8
Q ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcE---EEEEecCcccccCCCC
Q psy2470 416 MPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMR---KIVIATNIAETSITIP 492 (858)
Q Consensus 416 ~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~---kVlvATdvAergldIp 492 (858)
.++.++|||.......+.+.+.|... ++.+..+||+++.++|.++++.|.++.. -+|++|..++.||++.
T Consensus 116 ~~g~KvlIFs~~~~~ld~l~~~l~~~-------g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~vlLls~~agg~GlnL~ 188 (346)
T d1z3ix1 116 TTSDKVVLVSNYTQTLDLFEKLCRNR-------RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLI 188 (346)
T ss_dssp HCCCEEEEEESCHHHHHHHHHHHHHH-------TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCT
T ss_pred hcCCceeEEeehhhhhHHHHHHHhhh-------hccccccccchhHHHHHHHHHhhhcccccceeeeecchhhhhccccc
Confidence 34668999999999999999999877 8889999999999999999999966533 4788999999999999
Q ss_pred CeeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC---ceEEEeh
Q psy2470 493 GIVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS---GHVYRKN 546 (858)
Q Consensus 493 ~V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~---G~~~rL~ 546 (858)
+.++||. || .|-+++...|+.||+-|.|. -.+|+|+
T Consensus 189 ~a~~vi~--------~d----------~~wnp~~~~Qa~~R~~R~GQ~~~V~v~rli 227 (346)
T d1z3ix1 189 GANRLVM--------FD----------PDWNPANDEQAMARVWRDGQKKTCYIYRLL 227 (346)
T ss_dssp TEEEEEE--------CS----------CCSSHHHHHHHHTTSSSTTCCSCEEEEEEE
T ss_pred cceEEEE--------ec----------CCCccchHhHhhhcccccCCCCceEEEEEE
Confidence 9999999 76 45678888999999988775 4567776
|
| >d1tf5a4 c.37.1.19 (A:396-570) Translocation ATPase SecA, nucleotide-binding domains {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Bacillus subtilis [TaxId: 1423]
Probab=98.48 E-value=3.5e-07 Score=87.09 Aligned_cols=118 Identities=19% Similarity=0.126 Sum_probs=85.5
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
++..+.++.+...+.. ..+||||+.|.+..+.+++.|++. ++....|++....++-.-+-++-..| .|.
T Consensus 18 eK~~AIi~eV~~~~~~--grPVLIgT~SIe~SE~ls~~L~~~-------gi~h~vLnAk~~~~Ea~II~~Ag~~g--~Vt 86 (175)
T d1tf5a4 18 GKFKAVAEDVAQRYMT--GQPVLVGTVAVETSELISKLLKNK-------GIPHQVLNAKNHEREAQIIEEAGQKG--AVT 86 (175)
T ss_dssp HHHHHHHHHHHHHHHH--TCCEEEEESCHHHHHHHHHHHHTT-------TCCCEEECSSCHHHHHHHHTTTTSTT--CEE
T ss_pred HHHHHHHHHHHHHHhc--CCCEEEEeCcHHHHHHHHHHHHHc-------CCCceeehhhhHHHHHHHHHhccCCC--cee
Confidence 4445566666666655 467999999999999999999977 67777788876555554444444444 699
Q ss_pred EecCcccccCCCCC--------eeEEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCCC-ceEEEeh
Q psy2470 480 IATNIAETSITIPG--------IVYVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVRS-GHVYRKN 546 (858)
Q Consensus 480 vATdvAergldIp~--------V~~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g~-G~~~rL~ 546 (858)
||||.|.||.||.= =-|||-+. .|.|..--.|-.||+||.|. |.+--++
T Consensus 87 IATNmAGRGtDikl~~~v~~~GGLhVI~t~------------------~~~s~Rid~Ql~GR~gRQGdpGs~~~~~ 144 (175)
T d1tf5a4 87 IATNMAGRGTDIKLGEGVKELGGLAVVGTE------------------RHESRRIDNQLRGRSGRQGDPGITQFYL 144 (175)
T ss_dssp EEETTSSTTCCCCCCTTSGGGTSEEEEESS------------------CCSSHHHHHHHHTTSSGGGCCEEEEEEE
T ss_pred ehhhHHHcCCCccchHHHHhCCCcEEEEec------------------cCcchhHHHHHhcchhhhCCCcccEEEE
Confidence 99999999999852 22455432 35566777899999999997 6654433
|
| >d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecQ helicase domain species: Escherichia coli [TaxId: 562]
Probab=98.46 E-value=1e-08 Score=102.00 Aligned_cols=142 Identities=12% Similarity=0.101 Sum_probs=77.3
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.++|||||| .+|.+|... . ...++++.|++.++.|..+++ +..+...+.. .+...
T Consensus 45 v~apTGsGKT-----~~~~~~~~~-------~--------~~~~~~v~P~~~L~~q~~~~l-~~~~~~~~~~---~~~~~ 100 (206)
T d1oywa2 45 VVMPTGGGKS-----LCYQIPALL-------L--------NGLTVVVSPLISLMKDQVDQL-QANGVAAACL---NSTQT 100 (206)
T ss_dssp EECSCHHHHH-----HHHHHHHHH-------S--------SSEEEEECSCHHHHHHHHHHH-HHTTCCEEEE---CTTSC
T ss_pred EEcCCCCCCc-----chhhhhhhh-------c--------cCceEEeccchhhhhhHHHHH-Hhhccccccc---ccccc
Confidence 5699999999 444444322 0 124699999999999998877 4555443322 11111
Q ss_pred eccce------eecceeEEEeecCcccc-C-CCccCCCcccEE------EecCCCCCchhhhh--HHHHHHHHhcccCCC
Q psy2470 286 RKGRM------KILVSKIFKMSQGKPSD-S-GVEPISQSYLVE------LSILAPGGQDVIGE--DMKAFAEQLKPLKRT 349 (858)
Q Consensus 286 r~~~~------~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl------R~l~~~~~~d~ll~--~lk~~~~~l~~~~~~ 349 (858)
..+.. ......|+++||.++.. . ........+..+ ...+ .+..+... ....+. ...+
T Consensus 101 ~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~~~~~~~~~v~~lviDEaH~~~~--~~~~~~~~~~~~~~l~-----~~~~ 173 (206)
T d1oywa2 101 REQQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQ--WGHDFRPEYAALGQLR-----QRFP 173 (206)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCT--TSSCCCHHHHGGGGHH-----HHCT
T ss_pred cccchhHHHHHhcCCceEEEEechhhhchhhcccchhheeeeeeeeeeeeeec--cccchHHHHHHHHHHH-----HhCC
Confidence 11111 11347899999998876 2 222233344444 2212 00111111 111112 1235
Q ss_pred CceEEEEecccCH---HHHHHHhhcccCCCCcEEEe
Q psy2470 350 QLKLIISSATVDA---EEICQFYNISASSNATILSV 382 (858)
Q Consensus 350 ~~q~il~SAT~~~---~~~~~~~~~~~~~~~~~i~v 382 (858)
+.|+++||||++. +.+.++++- +.|++.|
T Consensus 174 ~~~ii~lSATl~~~v~~di~~~L~l----~~p~v~v 205 (206)
T d1oywa2 174 TLPFMALTATADDTTRQDIVRLLGL----NDPLIQI 205 (206)
T ss_dssp TSCEEEEESCCCHHHHHHHHHHHTC----CSCEEEE
T ss_pred CCceEEEEeCCCHHHHHHHHHHcCC----CCCcEEe
Confidence 7899999999954 357777642 3455554
|
| >d1z5za1 c.37.1.19 (A:663-906) Helicase of the SNF2/Rad54 hamily {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Helicase of the SNF2/Rad54 hamily species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.37 E-value=2.8e-07 Score=93.95 Aligned_cols=105 Identities=18% Similarity=0.125 Sum_probs=73.8
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCC-cEE-EEEecCcccccCCCCCee
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRA-MRK-IVIATNIAETSITIPGIV 495 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g-~~k-VlvATdvAergldIp~V~ 495 (858)
+.++|||+.-...++.+...+.+.. +..+..+||++++++|.++++.|.++ ..+ ++++|..+..|+|+...+
T Consensus 85 g~kviIFs~~~~~~~~l~~~l~~~~------~~~~~~i~G~~~~~~R~~~i~~F~~~~~~~vll~~~~~~g~Glnl~~a~ 158 (244)
T d1z5za1 85 GDKIAIFTQFVDMGKIIRNIIEKEL------NTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 158 (244)
T ss_dssp TCCEEEEESCHHHHHHHHHHHHHHH------CSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCTTCS
T ss_pred ccceEEEeeceehHHHHHHHHHhhc------cceEEEEecccchhccchhhhhhhccccchhccccccccccccccchhh
Confidence 5689999999999999988887431 56677789999999999999999654 344 456678999999999999
Q ss_pred EEEcCCCccceeccCCCCCCcceeeecCHhhHHHhhcccCCCC---CceEEEeh
Q psy2470 496 YVIDPGFVKARWFNPNTLTNSLVVVPISKASAVQRAGRAGRVR---SGHVYRKN 546 (858)
Q Consensus 496 ~VId~g~~k~~~yd~~~g~~~l~~~pis~~~~~qR~GRaGR~g---~G~~~rL~ 546 (858)
+||. ||+ |-+.+.+.|+.||+-|.| +-.+|+|+
T Consensus 159 ~vi~--------~~~----------~wn~~~~~Qa~~R~~R~Gq~~~v~i~~l~ 194 (244)
T d1z5za1 159 RVIH--------FDR----------WWNPAVEDQATDRVYRIGQTRNVIVHKLI 194 (244)
T ss_dssp EEEE--------CSC----------CSCTTTC--------------CCEEEEEE
T ss_pred hhhh--------cCc----------hhhhHHHhhhcceeeecCCCCceEEEEEe
Confidence 9999 552 333444556666666655 46777876
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=98.35 E-value=1.5e-07 Score=92.56 Aligned_cols=138 Identities=9% Similarity=-0.036 Sum_probs=77.5
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.|+||||||++++.++. .. .. +. ..++++++|++.|+.|.++++.+..+.. +..+ +++.-
T Consensus 28 v~~pTGsGKT~i~~~~~~-----~~-~~-----~~-----~~~il~i~P~~~L~~q~~~~~~~~~~~~-~~~v--~~~~~ 88 (200)
T d1wp9a1 28 IVLPTGLGKTLIAMMIAE-----YR-LT-----KY-----GGKVLMLAPTKPLVLQHAESFRRLFNLP-PEKI--VALTG 88 (200)
T ss_dssp EECCTTSCHHHHHHHHHH-----HH-HH-----HS-----CSCEEEECSSHHHHHHHHHHHHHHBCSC-GGGE--EEECS
T ss_pred EEeCCCCcHHHHHHHHHH-----HH-HH-----hc-----CCcEEEEcCchHHHHHHHHHHHHhhccc-ccce--eeeec
Confidence 569999999944443221 10 00 11 1247999999999999999887665433 3330 22111
Q ss_pred eccc----eeecceeEEEeecCcccc-C-CCccCCCcccEE-----EecCCCCCchhhhhHHHHHHHHhcccCCCCceEE
Q psy2470 286 RKGR----MKILVSKIFKMSQGKPSD-S-GVEPISQSYLVE-----LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLI 354 (858)
Q Consensus 286 r~~~----~~~~~t~I~v~TpGrLl~-~-~~~~~L~~~~vl-----R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~i 354 (858)
.... ......+|+++||+++.. + .....++++..+ .++.. ..........+. ...++.+++
T Consensus 89 ~~~~~~~~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~vIiDE~H~~~~---~~~~~~~~~~~~-----~~~~~~~~l 160 (200)
T d1wp9a1 89 EKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVG---NYAYVFIAREYK-----RQAKNPLVI 160 (200)
T ss_dssp CSCHHHHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCST---TCHHHHHHHHHH-----HHCSSCCEE
T ss_pred ccchhHHHHhhhcccccccccchhHHHHhhhhhhccccceEEEEehhhhhc---chhHHHHHHHHH-----hcCCCCcEE
Confidence 1110 011346899999999988 3 333345566655 33330 111122222222 234567899
Q ss_pred EEeccc--CHHHHHHHhh
Q psy2470 355 ISSATV--DAEEICQFYN 370 (858)
Q Consensus 355 l~SAT~--~~~~~~~~~~ 370 (858)
.||||. +.+.+.+.+.
T Consensus 161 ~~SATp~~~~~~~~~~~~ 178 (200)
T d1wp9a1 161 GLTASPGSTPEKIMEVIN 178 (200)
T ss_dssp EEESCSCSSHHHHHHHHH
T ss_pred EEEecCCCcHHHHHHHHh
Confidence 999998 4566666554
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.99 E-value=1.3e-06 Score=79.80 Aligned_cols=96 Identities=14% Similarity=-0.096 Sum_probs=58.5
Q ss_pred cCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEe-ccceeecceeEEEeecCcccc-CCCccCCCcccEE----
Q psy2470 247 RPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFR-KGRMKILVSKIFKMSQGKPSD-SGVEPISQSYLVE---- 320 (858)
Q Consensus 247 ~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr-~~~~~~~~t~I~v~TpGrLl~-~~~~~~L~~~~vl---- 320 (858)
..+++++|+++++.|.++.+. +.. +++... ..........+.++|.+.+.+ .+.+..+.++++|
T Consensus 37 ~~vli~~p~~~l~~q~~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~lvIiDE 106 (140)
T d1yksa1 37 LRTLVLAPTRVVLSEMKEAFH---GLD-------VKFHTQAFSAHGSGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDE 106 (140)
T ss_dssp CCEEEEESSHHHHHHHHHHTT---TSC-------EEEESSCCCCCCCSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETT
T ss_pred ceeeeeecchhHHHHHHHHhh---hhh-------hhhcccccccccccccchhhhhHHHHHHHHhccccccceeEEEEcc
Confidence 357999999999988876552 211 222211 122222346678888888888 6777778888877
Q ss_pred -EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEeccc
Q psy2470 321 -LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATV 360 (858)
Q Consensus 321 -R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~ 360 (858)
..++ +..+...+++..+. . .++.++++||||.
T Consensus 107 aH~~~--~~~~~~~~~~~~~~-----~-~~~~~~l~lTATP 139 (140)
T d1yksa1 107 AHFLD--PASIAARGWAAHRA-----R-ANESATILMTATP 139 (140)
T ss_dssp TTCCS--HHHHHHHHHHHHHH-----H-TTSCEEEEECSSC
T ss_pred ccccC--hhhHHHHHHHHHHh-----h-CCCCCEEEEEcCC
Confidence 2222 01223334444433 2 3578999999996
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.87 E-value=2.3e-06 Score=87.56 Aligned_cols=160 Identities=11% Similarity=0.012 Sum_probs=88.6
Q ss_pred cccchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEc
Q psy2470 173 HEMCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVR 252 (858)
Q Consensus 173 ~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl 252 (858)
....|.|..+|...+ ..+...+..+.+ -.--+.|-||||||.+++.++...- +. | .+++++
T Consensus 78 ~~LPFeLT~~Q~~ai-~ei~~d~~~~~~-m~rLL~GdvGSGKT~Va~~a~~~~~------------~~--g---~q~~~m 138 (264)
T d1gm5a3 78 KSLPFKLTNAQKRAH-QEIRNDMISEKP-MNRLLQGDVGSGKTVVAQLAILDNY------------EA--G---FQTAFM 138 (264)
T ss_dssp HHSSSCCCHHHHHHH-HHHHHHHHSSSC-CCCEEECCSSSSHHHHHHHHHHHHH------------HH--T---SCEEEE
T ss_pred hhccccCCchHHHHH-HHHHHHhhccCc-ceeeeeccccccccHHHHHHHHHHH------------hc--c---cceeEE
Confidence 456677777665333 335555544443 2333479999999977777664321 11 1 368999
Q ss_pred cchHHHHHHHHHHHHHHhC---CcCccEeeeeeEEEeccc------eeecceeEEEeecCccccCCCccCCCccc--EE-
Q psy2470 253 SSIDVACSCTVVEFLTEMG---CRMDFEYISRGYMFRKGR------MKILVSKIFKMSQGKPSDSGVEPISQSYL--VE- 320 (858)
Q Consensus 253 ~PtR~la~qva~~v~~e~g---~~~g~~~~~vG~~vr~~~------~~~~~t~I~v~TpGrLl~~~~~~~L~~~~--vl- 320 (858)
+||..||.|.++++.+.++ ..+... .|.....+. ..++..+|+|||---+.+ +..+.+.. ||
T Consensus 139 ~Pt~~La~Qh~~~~~~~f~~~~~~v~~l---~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~---~~~f~~LglviiD 212 (264)
T d1gm5a3 139 VPTSILAIQHYRRTVESFSKFNIHVALL---IGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE---DVHFKNLGLVIID 212 (264)
T ss_dssp CSCHHHHHHHHHHHHHHHTCSSCCEEEC---CSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH---CCCCSCCCEEEEE
T ss_pred eehHhhhHHHHHHHHHhhhhccccceee---ccccchHHHHHHHHHHHCCCCCEEEeehHHhcC---CCCccccceeeec
Confidence 9999999999999987763 343332 221111110 112457999999876654 11222332 33
Q ss_pred EecCCCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH
Q psy2470 321 LSILAPGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF 368 (858)
Q Consensus 321 R~l~~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~ 368 (858)
.-- + .|+-.+ +.+. ....+..+++||||...+.++.-
T Consensus 213 EqH------~--fgv~Qr--~~l~-~~~~~~~~l~~SATPiprtl~~~ 249 (264)
T d1gm5a3 213 EQH------R--FGVKQR--EALM-NKGKMVDTLVMSATPIPRSMALA 249 (264)
T ss_dssp SCC------C--C-------CCCC-SSSSCCCEEEEESSCCCHHHHHH
T ss_pred ccc------c--cchhhH--HHHH-HhCcCCCEEEEECCCCHHHHHHH
Confidence 100 0 111111 0111 22345789999999977776653
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=97.65 E-value=3.3e-05 Score=77.24 Aligned_cols=160 Identities=10% Similarity=-0.007 Sum_probs=87.5
Q ss_pred cchhccCCCChhHHHHHHHhcCCCCccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccc
Q psy2470 175 MCFSIRGNQTQPLLLRVRRALDFPDMPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSS 254 (858)
Q Consensus 175 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~P 254 (858)
..|.+..+|.. ....+...+..+.+ -.--+.|.||||||.+++++++..- + ...++++++|
T Consensus 52 lP~~lt~~Q~~-~~~~i~~~~~~~~~-~~~LL~GdvGsGKT~V~~~a~~~~~------------~-----~g~qv~~l~P 112 (233)
T d2eyqa3 52 FPFETTPDQAQ-AINAVLSDMCQPLA-MDRLVCGDVGFGKTEVAMRAAFLAV------------D-----NHKQVAVLVP 112 (233)
T ss_dssp CCSCCCHHHHH-HHHHHHHHHHSSSC-CEEEEECCCCTTTHHHHHHHHHHHH------------T-----TTCEEEEECS
T ss_pred cccccchhHHH-HHHHHHHHHhccCc-cCeEEEcCCCCCcHHHHHHHHHHHH------------H-----cCCceEEEcc
Confidence 45555554442 22345555555443 2334479999999977777665421 1 1236899999
Q ss_pred hHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccce----------eecceeEEEeecCccccCCCccCCCcccEEEecC
Q psy2470 255 IDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRM----------KILVSKIFKMSQGKPSDSGVEPISQSYLVELSIL 324 (858)
Q Consensus 255 tR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~----------~~~~t~I~v~TpGrLl~~~~~~~L~~~~vlR~l~ 324 (858)
|..||.|..+++.+.++ ..+.. +..-.++... .....+|+|+|--.+.+ ...+.+...| -+|
T Consensus 113 t~~La~Q~~~~~~~~~~-~~~~~---v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~---~~~f~~LgLi-IiD 184 (233)
T d2eyqa3 113 TTLLAQQHYDNFRDRFA-NWPVR---IEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQS---DVKFKDLGLL-IVD 184 (233)
T ss_dssp SHHHHHHHHHHHHHHST-TTTCC---EEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHS---CCCCSSEEEE-EEE
T ss_pred HHHhHHHHHHHHHHHHh-hCCCE---EEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhcc---CCccccccce-eee
Confidence 99999999999966433 22222 2222222111 11347999999776654 1122333322 111
Q ss_pred CCCCchhhhhHHHHHHHHhcccCCCCceEEEEecccCHHHHHHH
Q psy2470 325 APGGQDVIGEDMKAFAEQLKPLKRTQLKLIISSATVDAEEICQF 368 (858)
Q Consensus 325 ~~~~~d~ll~~lk~~~~~l~~~~~~~~q~il~SAT~~~~~~~~~ 368 (858)
|..+|--.-...+. ....+..++++|||..++.++.-
T Consensus 185 --EeH~fg~kQ~~~l~-----~~~~~~~~l~~SATPiprtl~~~ 221 (233)
T d2eyqa3 185 --EEHRFGVRHKERIK-----AMRANVDILTLTATPIPRTLNMA 221 (233)
T ss_dssp --SGGGSCHHHHHHHH-----HHHTTSEEEEEESSCCCHHHHHH
T ss_pred --chhhhhhHHHHHHH-----hhCCCCCEEEEecchhHHHHHHH
Confidence 11111111111111 22356789999999987776653
|
| >d1nkta4 c.37.1.19 (A:397-615) Translocation ATPase SecA, nucleotide-binding domains {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Translocation ATPase SecA, nucleotide-binding domains species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.54 E-value=0.00019 Score=69.12 Aligned_cols=81 Identities=16% Similarity=0.128 Sum_probs=60.5
Q ss_pred chHHHHHHHHHHHHhhCCCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEE
Q psy2470 400 NYVQGVVDTAIKIHESMPVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIV 479 (858)
Q Consensus 400 ~~~~~~~~~l~~i~~~~~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVl 479 (858)
.+..+.++.+...|.. ..+|||...+-+.-+.+.+.|.+. ++..-.|++.-...|-.-|-++=+.| .|-
T Consensus 18 ~K~~Avv~ei~~~h~~--GqPVLVGT~SVe~SE~lS~lL~~~-------gi~h~vLNAK~herEAeIIAqAG~~G--aVT 86 (219)
T d1nkta4 18 AKYIAVVDDVAERYAK--GQPVLIGTTSVERSEYLSRQFTKR-------RIPHNVLNAKYHEQEATIIAVAGRRG--GVT 86 (219)
T ss_dssp HHHHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHHHHHHT-------TCCCEEECSSCHHHHHHHHHTTTSTT--CEE
T ss_pred HHHHHHHHHHHHHHhc--CCCEEEeeCcHHHHHHHHHHHHHh-------ccchhccchhhHHHHHHHHHhcccCC--cEE
Confidence 3445666677777765 567999999999999999999987 77777788764444433334444444 478
Q ss_pred EecCcccccCCC
Q psy2470 480 IATNIAETSITI 491 (858)
Q Consensus 480 vATdvAergldI 491 (858)
||||.|.||-||
T Consensus 87 IATNMAGRGTDI 98 (219)
T d1nkta4 87 VATNMAGRGTDI 98 (219)
T ss_dssp EEETTCSTTCCC
T ss_pred eeccccCCCCce
Confidence 999999999999
|
| >d1yksa2 c.37.1.14 (A:325-623) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=97.22 E-value=5.3e-06 Score=86.41 Aligned_cols=97 Identities=6% Similarity=-0.201 Sum_probs=74.8
Q ss_pred CCcccccCChhHHHHHHHHcCCCCCCCCCCCCCCCHHHHHHHHHHHHhcCccccCCCcchHHHhhhhcCCCCchhhhHHh
Q psy2470 60 TPPEMQRTELSSAVLQLKALGIHNILRFSFPSPPPAQNLRVALELLYSLGAMDVNGNLTKPVGETMAEMPLHPIHAKVLL 139 (858)
Q Consensus 60 ~~pei~r~~l~~~~L~lk~lg~~~~~~f~~~~~P~~~~l~~a~~~L~~l~ald~~~~lt~~lG~~ma~lp~~p~~~~~l~ 139 (858)
+.++|++.+ +.+.++.+|+.+...|+|+++|+.+....+++.++.+|||+..+-.+ ++|++|++.++.+...+++
T Consensus 169 te~~i~l~~---i~l~~~~~g~~~~~e~~~~~~p~g~~~L~~~~~l~~l~aL~~~d~p~-~La~~va~~~~~~~~~~~~- 243 (299)
T d1yksa2 169 LEASMLLDN---MEVRGGMVAPLYGVEGTKTPVSPGEMRLRDDQRKVFRELVRNCDLPV-WLSWQVAKAGLKTNDRKWC- 243 (299)
T ss_dssp HHHHHHHTT---SCCGGGCCCCCSTTHHHHSSSCTTTTCCCHHHHHHHHHHHHTTCCCH-HHHHHHHHTTCCTTCCGGG-
T ss_pred hhHHHHhhC---cccccccccccchhhhccccCCCchhhhhHhHHHHHHHHHhhcCCCc-chHHHHHhcccccccccce-
Confidence 334444444 45788999999999999999999999889999999999999888888 6999999999998877665
Q ss_pred hcccccchHHHHHHHhhhhhccccc-CCCCcccccc
Q psy2470 140 SSGSVLDSAVEILLHRLRGLCDNVD-SGPETFHDHE 174 (858)
Q Consensus 140 ~s~s~~~~~~~~~~~r~~~~~~~~~-~~~~~f~~~e 174 (858)
|++|.+..-.++ ..+..|...+
T Consensus 244 -------------f~~P~e~~i~~~~~~~~~f~~~~ 266 (299)
T d1yksa2 244 -------------FEGPEEHEILNDSGETVKCRAPG 266 (299)
T ss_dssp -------------SCSCGGGCCBCTTSCBCEEECTT
T ss_pred -------------eECchhchhhhhhccccceeCCC
Confidence 567777654443 2334555444
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=97.05 E-value=0.00027 Score=72.84 Aligned_cols=71 Identities=4% Similarity=-0.159 Sum_probs=42.1
Q ss_pred CEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEEeccceeecceeEEEeecCccccCCCccCCCcccEE
Q psy2470 248 PTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMFRKGRMKILVSKIFKMSQGKPSDSGVEPISQSYLVE 320 (858)
Q Consensus 248 ~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~vr~~~~~~~~t~I~v~TpGrLl~~~~~~~L~~~~vl 320 (858)
++|+++|+++|+.|.++.+.+. +.......+.++.+............|+++|.-.+.+.. ...++++.+|
T Consensus 159 k~Liivp~~~Lv~Q~~~~f~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~i~i~t~qs~~~~~-~~~~~~f~~V 229 (282)
T d1rifa_ 159 KILIIVPTTALTTQMADDFVDY-RLFSHAMIKKIGGGASKDDKYKNDAPVVVGTWQTVVKQP-KEWFSQFGMM 229 (282)
T ss_dssp EEEEECSSHHHHHHHHHHHHHH-TSCCGGGEEECSTTCSSTTCCCTTCSEEEECHHHHTTSC-GGGGGGEEEE
T ss_pred eEEEEEcCchhHHHHHHHHHHh-hccccccceeecceecccccccccceEEEEeeehhhhhc-ccccCCCCEE
Confidence 4799999999999999988543 433332211122122222222234689999987776622 2345667766
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=96.52 E-value=0.00067 Score=66.24 Aligned_cols=72 Identities=7% Similarity=-0.055 Sum_probs=42.1
Q ss_pred hccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCCcCccEeeeeeEEE
Q psy2470 206 YIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGCRMDFEYISRGYMF 285 (858)
Q Consensus 206 ~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~~~g~~~~~vG~~v 285 (858)
+.++||||||+..+..+ ... ..++||++|++.++.|..+++.+ ++... +|...
T Consensus 90 l~~~tG~GKT~~a~~~~----------~~~----------~~~~Liv~p~~~L~~q~~~~~~~-~~~~~------~~~~~ 142 (206)
T d2fz4a1 90 IVLPTGSGKTHVAMAAI----------NEL----------STPTLIVVPTLALAEQWKERLGI-FGEEY------VGEFS 142 (206)
T ss_dssp EEESSSTTHHHHHHHHH----------HHS----------CSCEEEEESSHHHHHHHHHHHGG-GCGGG------EEEES
T ss_pred EEeCCCCCceehHHhHH----------HHh----------cCceeEEEcccchHHHHHHHHHh-hcccc------hhhcc
Confidence 56899999993322211 111 11479999999999998887743 33221 22111
Q ss_pred eccceeecceeEEEeecCcccc
Q psy2470 286 RKGRMKILVSKIFKMSQGKPSD 307 (858)
Q Consensus 286 r~~~~~~~~t~I~v~TpGrLl~ 307 (858)
+ .......|+++|...+..
T Consensus 143 ~---~~~~~~~i~i~t~~~~~~ 161 (206)
T d2fz4a1 143 G---RIKELKPLTVSTYDSAYV 161 (206)
T ss_dssp S---SCBCCCSEEEEEHHHHHH
T ss_pred c---ccccccccccceehhhhh
Confidence 1 111235688888876655
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=88.80 E-value=0.33 Score=48.20 Aligned_cols=79 Identities=13% Similarity=0.040 Sum_probs=65.5
Q ss_pred CCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc-ccCCCCCeeE
Q psy2470 418 VGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE-TSITIPGIVY 496 (858)
Q Consensus 418 ~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe-rgldIp~V~~ 496 (858)
+.++++-+||.-=++...+.+++.... .++.+..+||+++..+|.+++...++|+.+|||.|--+= ..+...++.+
T Consensus 132 g~q~~~m~Pt~~La~Qh~~~~~~~f~~---~~~~v~~l~~~~~~~~r~~~~~~~~~g~~~iiIGThsl~~~~~~f~~Lgl 208 (264)
T d1gm5a3 132 GFQTAFMVPTSILAIQHYRRTVESFSK---FNIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQEDVHFKNLGL 208 (264)
T ss_dssp TSCEEEECSCHHHHHHHHHHHHHHHTC---SSCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHCCCCSCCCE
T ss_pred ccceeEEeehHhhhHHHHHHHHHhhhh---ccccceeeccccchHHHHHHHHHHHCCCCCEEEeehHHhcCCCCccccce
Confidence 578999999999888888888754321 277899999999999999999999999999999987554 3577778887
Q ss_pred EE-c
Q psy2470 497 VI-D 499 (858)
Q Consensus 497 VI-d 499 (858)
|| |
T Consensus 209 viiD 212 (264)
T d1gm5a3 209 VIID 212 (264)
T ss_dssp EEEE
T ss_pred eeec
Confidence 66 6
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=88.70 E-value=0.35 Score=47.12 Aligned_cols=80 Identities=11% Similarity=0.096 Sum_probs=66.9
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecCccc-ccCCCCCee
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATNIAE-TSITIPGIV 495 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATdvAe-rgldIp~V~ 495 (858)
.+.++++-+|+.--+....+.+++.... -+..+..+||.++..+|..+++...+|+.+|||-|--+- ..+..+++.
T Consensus 103 ~g~qv~~l~Pt~~La~Q~~~~~~~~~~~---~~~~v~~l~~~~~~~~~~~~~~~~~~g~~~iviGths~l~~~~~f~~Lg 179 (233)
T d2eyqa3 103 NHKQVAVLVPTTLLAQQHYDNFRDRFAN---WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDVKFKDLG 179 (233)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHHSTT---TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCCCCSSEE
T ss_pred cCCceEEEccHHHhHHHHHHHHHHHHhh---CCCEEEeccCcccchhHHHHHHHHhCCCCCEEEeehhhhccCCcccccc
Confidence 3679999999999999988888864221 267899999999999999999999999999999987443 468888999
Q ss_pred EEE-c
Q psy2470 496 YVI-D 499 (858)
Q Consensus 496 ~VI-d 499 (858)
+|| |
T Consensus 180 LiIiD 184 (233)
T d2eyqa3 180 LLIVD 184 (233)
T ss_dssp EEEEE
T ss_pred ceeee
Confidence 776 6
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=85.76 E-value=0.57 Score=44.76 Aligned_cols=58 Identities=12% Similarity=0.153 Sum_probs=32.7
Q ss_pred cccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccc-hHHHHHHHHHHHHHHhCCcC
Q psy2470 201 PYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSS-IDVACSCTVVEFLTEMGCRM 274 (858)
Q Consensus 201 ~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~P-tR~la~qva~~v~~e~g~~~ 274 (858)
|.-+-.+|+||+|||..-..+| +.+. .. |+ ...||..- -|.+|..=.+.+++.+|+.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA-------~~~~-----~~--g~--kV~lit~Dt~R~gA~eQL~~~a~~l~v~~ 67 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLA-------RQFE-----QQ--GK--SVMLAAGDTFRAAAVEQLQVWGQRNNIPV 67 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHH-------HHHH-----TT--TC--CEEEECCCTTCHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEECCCCCCHHHHHHHHH-------HHHH-----HC--CC--cEEEEecccccccchhhhhhhhhhcCCcc
Confidence 5556668999999993333222 2111 11 12 12355444 47777554577888888653
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=84.85 E-value=0.46 Score=45.58 Aligned_cols=59 Identities=12% Similarity=0.148 Sum_probs=33.3
Q ss_pred ccccchhccccCCcchhhhhhhhcCcCcccccccccCCCCCCCCCCccCEEEccc-hHHHHHHHHHHHHHHhCCcC
Q psy2470 200 MPYQLRYIGQPEMGPLLLRVRRALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSS-IDVACSCTVVEFLTEMGCRM 274 (858)
Q Consensus 200 ~~~~~~~~a~TGSGKT~~~~~~a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~P-tR~la~qva~~v~~e~g~~~ 274 (858)
.|.-+-.+|+||+|||..-..+| ..+. .. |+ .-++|..- -|..|..=.+.+++.+|..+
T Consensus 10 ~p~vi~lvGptGvGKTTTiAKLA-------a~~~-----~~--~~--kV~lit~Dt~R~gA~eQL~~~a~~l~i~~ 69 (213)
T d1vmaa2 10 PPFVIMVVGVNGTGKTTSCGKLA-------KMFV-----DE--GK--SVVLAAADTFRAAAIEQLKIWGERVGATV 69 (213)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHH-------HHHH-----HT--TC--CEEEEEECTTCHHHHHHHHHHHHHHTCEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-------HHHH-----HC--CC--ceEEEeecccccchhHHHHHHhhhcCccc
Confidence 46666778999999993222222 2111 11 12 12344433 67777655577788888653
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=81.05 E-value=0.32 Score=48.62 Aligned_cols=55 Identities=15% Similarity=0.020 Sum_probs=35.1
Q ss_pred chhccccCCcchhhhhhh-hcCcCcccccccccCCCCCCCCCCccCEEEccchHHHHHHHHHHHHHHhCC
Q psy2470 204 LRYIGQPEMGPLLLRVRR-ALDFPDMPYQLRYIGQPEMGVGDKARPTIVRSSIDVACSCTVVEFLTEMGC 272 (858)
Q Consensus 204 ~~~~a~TGSGKT~~~~~~-a~~lP~~~~~l~~l~~~~~g~g~~~~~~LVl~PtR~la~qva~~v~~e~g~ 272 (858)
+.|.|.+|||||.+-+.. +..+ .-. +.+...+|++++|+.+|..+..++.+..+.
T Consensus 17 ~lI~g~aGTGKTt~l~~rv~~ll-------~~~-------~~~~~~ILvlt~tn~a~~~i~~~~~~~~~~ 72 (306)
T d1uaaa1 17 CLVLAGAGSGKTRVITNKIAHLI-------RGC-------GYQARHIAAVTFTNKAAREMKERVGQTLGR 72 (306)
T ss_dssp EEECCCTTSCHHHHHHHHHHHHH-------HHH-------CCCGGGEEEEESSHHHHHHHHHHHHHHSCT
T ss_pred EEEEeeCCccHHHHHHHHHHHHH-------Hhc-------CCChhHEEEEeCcHHHHHHHHHHHHHhcCc
Confidence 678899999999322211 1110 000 112235899999999999998888766543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=80.98 E-value=0.56 Score=40.95 Aligned_cols=49 Identities=20% Similarity=0.261 Sum_probs=37.8
Q ss_pred ccceecchhhHHHhcccCcccccceeEeecccccccchhhHHHHHHHHHHh
Q psy2470 645 TKIKYMTEGILMREMMTDPLLRKYSVIMLDEVHERTIFTDILMGLLKKILK 695 (858)
Q Consensus 645 T~i~~~~~G~lls~L~~dp~l~~~~~~iide~her~~~~d~ll~~l~~ll~ 695 (858)
+.+.+++.+...... +..+.++++||+||+|+.+..++..+..+.+++.
T Consensus 74 ~~~~~~~~~~~~~~~--~~~~~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~ 122 (136)
T d1a1va1 74 SPITYSTYGKFLADG--GCSGGAYDIIICDECHSTDATSILGIGTVLDQAE 122 (136)
T ss_dssp CSEEEEEHHHHHHTT--GGGGCCCSEEEEETTTCCSHHHHHHHHHHHHHTT
T ss_pred cceEEEeeeeecccc--chhhhcCCEEEEecccccCHHHHHHHHHHHHHHH
Confidence 456777777766654 4567899999999999998888888776666654
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=80.37 E-value=4.6 Score=37.69 Aligned_cols=75 Identities=17% Similarity=0.217 Sum_probs=57.3
Q ss_pred CCCCEEEEcCCHHHHHHHHHHHHHhccCCCCcceEEEeccCCCCHHHHHHhcCCCCCCcEEEEEecC-----cc-cccCC
Q psy2470 417 PVGDILAFVIGLEQIEHIIGILKQYHNQREDLKLLILPMHGSLPNNEQIKVFRPTPRAMRKIVIATN-----IA-ETSIT 490 (858)
Q Consensus 417 ~~g~iLVFl~t~~~i~~l~~~L~~~~~~~~~~~~~v~~LHg~l~q~~r~~v~~~f~~g~~kVlvATd-----vA-ergld 490 (858)
....+||.+||++-+....+.+++.... .+..+..++|+.+..++.+.++. ..|||+|+ .. ...++
T Consensus 71 ~~~~~lil~pt~~l~~q~~~~~~~~~~~---~~~~v~~~~g~~~~~~~~~~l~~-----~~IlV~TP~~l~~~l~~~~~~ 142 (208)
T d1hv8a1 71 NGIEAIILTPTRELAIQVADEIESLKGN---KNLKIAKIYGGKAIYPQIKALKN-----ANIVVGTPGRILDHINRGTLN 142 (208)
T ss_dssp SSCCEEEECSCHHHHHHHHHHHHHHHCS---SCCCEEEECTTSCHHHHHHHHHT-----CSEEEECHHHHHHHHHTTCSC
T ss_pred cCcceEEEeeccccchhhhhhhhhhccc---CCeEEEEeeCCCChHHHHHhcCC-----CCEEEEChHHHHHHHHcCCCC
Confidence 3457999999999999999988865332 36778889999998888776642 35999995 23 44678
Q ss_pred CCCeeEEE-c
Q psy2470 491 IPGIVYVI-D 499 (858)
Q Consensus 491 Ip~V~~VI-d 499 (858)
..++.++| |
T Consensus 143 ~~~l~~lViD 152 (208)
T d1hv8a1 143 LKNVKYFILD 152 (208)
T ss_dssp TTSCCEEEEE
T ss_pred cccCcEEEEE
Confidence 88998766 5
|