Psyllid ID: psy2519
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | 2.2.26 [Sep-21-2011] | |||||||
| P45843 | 666 | Protein scarlet OS=Drosop | yes | N/A | 0.856 | 0.800 | 0.488 | 1e-152 | |
| Q17320 | 679 | Protein white OS=Ceratiti | N/A | N/A | 0.842 | 0.771 | 0.383 | 1e-102 | |
| P10090 | 687 | Protein white OS=Drosophi | no | N/A | 0.829 | 0.751 | 0.375 | 1e-101 | |
| Q05360 | 677 | Protein white OS=Lucilia | N/A | N/A | 0.840 | 0.772 | 0.377 | 5e-98 | |
| Q27256 | 695 | Protein white OS=Anophele | no | N/A | 0.823 | 0.736 | 0.369 | 3e-92 | |
| Q16928 | 709 | Protein white OS=Anophele | N/A | N/A | 0.844 | 0.740 | 0.357 | 1e-88 | |
| Q11180 | 598 | ABC transporter ATP-bindi | no | N/A | 0.866 | 0.901 | 0.318 | 2e-77 | |
| Q09466 | 610 | ABC transporter ATP-bindi | no | N/A | 0.815 | 0.831 | 0.312 | 5e-76 | |
| P12428 | 675 | Protein brown OS=Drosophi | no | N/A | 0.808 | 0.745 | 0.291 | 3e-62 | |
| Q24739 | 668 | Protein brown OS=Drosophi | N/A | N/A | 0.807 | 0.751 | 0.281 | 1e-60 |
| >sp|P45843|SCRT_DROME Protein scarlet OS=Drosophila melanogaster GN=st PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 539 bits (1388), Expect = e-152, Method: Compositional matrix adjust.
Identities = 263/538 (48%), Positives = 363/538 (67%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ + G++YQ DLF SLTV EHL FMA L+LDRRV +R +
Sbjct: 130 VVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLI 189
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL+++ TRIGS K VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 190 IKELLERTGLLSAAQTRIGSGD--DKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 247
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S+SA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 248 SYSAQQLVATLYEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 306
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
+ GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 307 FANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 366
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G
Sbjct: 367 HMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGA 426
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ + +Q GVQ+VQGALFIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 427 CFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQY 486
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y + IL+ LPG+II+ ++F +I YW++GLR++ F + + +L++NVAT+CG FS A
Sbjct: 487 YAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTA 546
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F +++SLP F W ++LSW+ Y+NEA+T QW GV
Sbjct: 547 FNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ 606
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F+ N+Y NL+AMV LYF FH L + L ++R
Sbjct: 607 NITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRAR 664
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Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q17320|WHITE_CERCA Protein white OS=Ceratitis capitata GN=W PE=2 SV=1 | Back alignment and function description |
|---|
Score = 373 bits (957), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/534 (38%), Positives = 313/534 (58%), Gaps = 10/534 (1%)
Query: 91 VNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 149
+NG PV+ K ++ C ++ Q DLF SLT EHL F A++++ R + Q++ ++ ++
Sbjct: 152 LNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHMTQKQKVQRVDQVIQ 211
Query: 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
+L L Q+T IG + LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF A
Sbjct: 212 DLSLGKCQNTLIGVPGRVKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAHS 269
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
+++++++L SQ+ KTV+ TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G
Sbjct: 270 VVQVLKKL-SQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPGEAVDFFSYIGA 328
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
CP Y PADF ++ LAV E+ SR R+ +ICD F+V ++E +E N+Q V +
Sbjct: 329 TCPTNYTPADFYVQVLAVVPGREVESRDRVAKICDNFAVGKVSRE--MEQNFQKLVKSNG 386
Query: 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID 389
F + + K WF ++ RS+L+V+++P + +L Q A++ GL F G
Sbjct: 387 FGKEDENEYTYKASWFMQFRAVLWRSWLSVLKEPLLVKVRLLQTTMVAVLIGLIFLGQ-Q 445
Query: 390 LTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILS 449
LTQ GV ++ GA+F+ +T TF ++ ++ F LP+F RE S LY ++L ++
Sbjct: 446 LTQVGVMNINGAIFLFLTNMTFQNSFATITVFTTELPVFMRETRSRLYRCDTYFLGKTIA 505
Query: 450 SLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTA 509
LP ++ LFT I Y + GLR + F A+ + L+ NV+TS G + S A SS S A
Sbjct: 506 ELPLFLVVPFLFTAIAYPLIGLRPGVDHFFTALALVTLVANVSTSFGYLISCACSSTSMA 565
Query: 510 MACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT--NITCF 567
++ P ++ G F S+P YF W+ YLSW Y+NE L I QW V ITC
Sbjct: 566 LSVGPPVIIPFLLFGGFFLNSGSVPVYFKWLSYLSWFRYANEGLLINQWADVKPGEITCT 625
Query: 568 DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPK 621
+ + C G ++ +NFS +L + I + +L F A++ L M++R K
Sbjct: 626 LS-NTTCPSSGEVILETLNFSASDLPFDFIGLALLIVGFRISAYIALTMRARRK 678
|
May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Ceratitis capitata (taxid: 7213) |
| >sp|P10090|WHITE_DROME Protein white OS=Drosophila melanogaster GN=w PE=2 SV=2 | Back alignment and function description |
|---|
Score = 369 bits (946), Expect = e-101, Method: Compositional matrix adjust.
Identities = 203/541 (37%), Positives = 315/541 (58%), Gaps = 25/541 (4%)
Query: 91 VNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 149
+NG+PV+ K ++ C ++ Q DLF SLT EHL F A++++ R + QR+A ++ ++
Sbjct: 161 LNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQ 220
Query: 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
EL L QHT IG + LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF+A
Sbjct: 221 ELSLSKCQHTIIGVPGRVKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHS 278
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
+++++++L SQ+ KTV+ TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G
Sbjct: 279 VVQVLKKL-SQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGA 337
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVD-------LEINYQ 322
CP YNPADF ++ LAV E+ SR R+ +ICD F++ A++++ LE +
Sbjct: 338 QCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAISKVARDMEQLLATKNLEKPLE 397
Query: 323 THVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
Y + K WF ++ RS+L+V+++P + +L Q A++ GL
Sbjct: 398 QPENGYTY----------KATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGL 447
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
F G LTQ GV ++ GA+F+ +T TF +++ ++ F LP+F RE S LY +
Sbjct: 448 IFLGQ-QLTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTY 506
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
+L ++ LP + ++FT I Y + GLR + F + + L+ NV+TS G + S A
Sbjct: 507 FLGKTIAELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCA 566
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
SS S A++ P ++ G F S+P Y W+ YLSW Y+NE L I QW V
Sbjct: 567 SSSTSMALSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVE 626
Query: 563 --NITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRP 620
I+C + + C G ++ +NFS +L + + + +L +F LA+L L +++R
Sbjct: 627 PGEISCTSS-NTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAYLALRLRARR 685
Query: 621 K 621
K
Sbjct: 686 K 686
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Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. White dimerize with brown for the transport of guanine. Scarlet and white complex transports a metabolic intermediate (such as 3-hydroxy kynurenine) from the cytoplasm into the pigment granules. Drosophila melanogaster (taxid: 7227) |
| >sp|Q05360|WHITE_LUCCU Protein white OS=Lucilia cuprina GN=W PE=2 SV=2 | Back alignment and function description |
|---|
Score = 358 bits (920), Expect = 5e-98, Method: Compositional matrix adjust.
Identities = 202/535 (37%), Positives = 312/535 (58%), Gaps = 12/535 (2%)
Query: 91 VNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 149
+NG PV+ K ++ C ++ Q DLF SLT EHL F A +++ R + Q++ ++ ++
Sbjct: 150 LNGHPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQATVRMPRTMTQKQKLQRVDQVIQ 209
Query: 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
+L L+ Q+T IG + LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF A+
Sbjct: 210 DLSLIKCQNTIIGVPGRVKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFMAAS 267
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
+++++++L SQR KTV+ TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G
Sbjct: 268 VVQVLKKL-SQRGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPVEAVDFFSFIGA 326
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
CP YNPADF ++ LAV E+ SR R+ +ICD F+V ++E +E N+Q D
Sbjct: 327 QCPTNYNPADFYVQVLAVVPGREIESRDRISKICDNFAVGKVSRE--MEQNFQKIAAKTD 384
Query: 330 FL-ADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSI 388
L D + + K WFT ++ RS+++ +++P + +L Q A++ GL F
Sbjct: 385 GLQKDDETTILYKASWFTQFRAIMWRSWISTLKEPLLVKVRLIQTTMVAVLIGLIFLNQ- 443
Query: 389 DLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYIL 448
+TQ GV ++ GA+F+ +T TF +++V++ F LP+F RE S LY ++L L
Sbjct: 444 PMTQVGVMNINGAIFLFLTNMTFQNVFAVINVFTSELPVFMRETRSRLYRCDTYFLGKTL 503
Query: 449 SSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVST 508
+ LP ++ LF I Y + GLR ++ FL A+ + L+ NV+TS G + S A +S S
Sbjct: 504 AELPLFLVVPFLFIAIAYPMIGLRPGITHFLSALALVTLVANVSTSFGYLISCASTSTSM 563
Query: 509 AMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT--NITC 566
A++ P ++ GVF S+P YF W+ Y SW Y+NE L I QW V ITC
Sbjct: 564 ALSVGPPLTIPFLLFGGVFLNSGSVPVYFKWLSYFSWFRYANEGLLINQWADVQPGEITC 623
Query: 567 FDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPK 621
+ + C G + +NF D L +++L F ++ M+++ K
Sbjct: 624 -TSTNTTCPSSGXVXLETLNFR-DKFTFRLYGLILLILIFRIAGYVAXKMRTKRK 676
|
May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Lucilia cuprina (taxid: 7375) |
| >sp|Q27256|WHITE_ANOGA Protein white OS=Anopheles gambiae GN=w PE=2 SV=1 | Back alignment and function description |
|---|
Score = 339 bits (870), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 203/550 (36%), Positives = 304/550 (55%), Gaps = 38/550 (6%)
Query: 91 VNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 149
+NG PV + R+ C ++ Q DLF PSLT EHL F A+L++ R V A + + +L
Sbjct: 164 LNGVPVNAEQLRARCAYVQQDDLFIPSLTTREHLLFQAMLRMGRDVPASVKQHRVQEVLQ 223
Query: 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
EL L+ T IG+ + LSGGERKRL+FA+E LTDP LLLCDEPT+GLDSF A
Sbjct: 224 ELSLVKCADTIIGAPGRIKG--LSGGERKRLAFASETLTDPHLLLCDEPTSGLDSFMAHS 281
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
++++++ + + + KT++ TIHQPSSEL +FDKI+L+A+ R AF+GS + F G
Sbjct: 282 VLQVLKGM-AMKGKTIILTIHQPSSELYCLFDKILLVAEGRVAFLGSPYQSAEFFSQLGI 340
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
PCP YNPADF ++ LA+ E R +K+ICD F+V A+EV LE
Sbjct: 341 PCPPNYNPADFYVQMLAIAPAKEAECRDMIKKICDSFAVSPIAREV-LET---------- 389
Query: 330 FLADFNSRKIKKPF----------------WFTIIYVLISRSFLNVVRDPAIQLSKLFQK 373
A + + +P+ W+T Y ++ RS+L+V++DP + +L Q
Sbjct: 390 --ASVAGKGMDEPYMLQQVEGVGSTGYRSSWWTQFYCILWRSWLSVLKDPMLVKVRLLQT 447
Query: 374 VATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYS 433
A + G + G + L Q GV ++ G+LF+ +T TF +++V++ F LP+F RE
Sbjct: 448 AMVATLIGSIYFGQV-LDQDGVMNINGSLFLFLTNMTFQNVFAVINVFSAELPVFLREKR 506
Query: 434 SGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVAT 493
S LY ++L ++ LP I +FT I Y + GLR + +L + I L+ NV+T
Sbjct: 507 SRLYRVDTYFLGKTIAELPLFIAVPFVFTSITYPMIGLRTGATHYLTTLFIVTLVANVST 566
Query: 494 SCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEAL 553
S G + S A SS+S A++ P +I G F +S+P YF ++ YLSW Y+NEAL
Sbjct: 567 SFGYLISCASSSISMALSVGPPVVIPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEAL 626
Query: 554 TITQWQGVTN--ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAF 611
I QW V + I C ++ C ++ NF ++ ++ + L F A
Sbjct: 627 LINQWSTVVDGEIAC-TRANVTCPRSEI-ILETFNFRVEDFALDIACLFALIVLFRLGAL 684
Query: 612 LFLLMKSRPK 621
L L ++SR K
Sbjct: 685 LCLWLRSRSK 694
|
May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Anopheles gambiae (taxid: 7165) |
| >sp|Q16928|WHITE_ANOAL Protein white OS=Anopheles albimanus GN=W PE=3 SV=1 | Back alignment and function description |
|---|
Score = 328 bits (840), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 196/548 (35%), Positives = 303/548 (55%), Gaps = 23/548 (4%)
Query: 91 VNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ-RIALINSLL 148
+NG PV + R+ C ++ Q DLF PSLT EHL F A+L++ R V A ++ ++ +L
Sbjct: 167 LNGVPVTAEQMRARCAYVQQDDLFIPSLTTKEHLMFQAMLRMGRDVPATPIKMHRVDEVL 226
Query: 149 IELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 208
EL L+ T IG + + LSGGERKR +F +E LTDP LLLCDEPT+ LDSF A
Sbjct: 227 QELSLVKCADTIIGVAGRVKG--LSGGERKRTAFRSETLTDPHLLLCDEPTSSLDSFMAQ 284
Query: 209 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268
++++++ + + + KT++ TIHQPSSEL +FD+I+L+A+ AF+GS + F G
Sbjct: 285 SVLQVLKGM-AMKGKTIILTIHQPSSELYCLFDRILLVAEG-VAFLGSPYQSADFFSQLG 342
Query: 269 YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEV-----------DL 317
PCP YNPADF ++ LA+ N E R +K+ICD F+V A+++ +
Sbjct: 343 IPCPPNYNPADFYVQMLAIAPNKETECRETIKKICDSFAVSPIARDIIETASQVNGDGGI 402
Query: 318 EINYQTHVGTYDFLADFNSRKIK--KPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVA 375
E+ H FL + W+T Y ++ RS+L+V++DP + +L Q
Sbjct: 403 ELTRTKHTTDPYFLQPMEGVDSTGYRASWWTQFYCILWRSWLSVLKDPMLVKVRLLQTAM 462
Query: 376 TALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSG 435
A + G + G + L Q GV ++ G+LF+ +T TF +++V++ F LP+F RE S
Sbjct: 463 VASLIGSIYFGQV-LDQDGVMNINGSLFLFLTNMTFQNVFAVINVFSAELPVFLREKRSR 521
Query: 436 LYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSC 495
LY ++L ++ LP I +FT I Y + GL+ ++S +L + I L+ NV+TS
Sbjct: 522 LYRVDTYFLGKTIAELPLFIAVPFVFTSITYPMIGLKAAISHYLTTLFIVTLVANVSTSF 581
Query: 496 GIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTI 555
G + S A SS+S A++ P +I G F +S+P YF ++ YLSW Y+NEAL I
Sbjct: 582 GYLISCASSSISMALSVGPPVVIPFLIFGGFFLNSASVPAYFKYLSYLSWFRYANEALLI 641
Query: 556 TQWQGVTN--ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLF 613
QW + I C ++ C G ++ NF ++ ++ + L F A
Sbjct: 642 NQWADHRDGEIGC-TRANVTCPASGEIILETFNFRVEDFALDIGCLFALIVLFRLGALFC 700
Query: 614 LLMKSRPK 621
L ++SR K
Sbjct: 701 LWLRSRSK 708
|
May be part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Anopheles albimanus (taxid: 7167) |
| >sp|Q11180|WHT1_CAEEL ABC transporter ATP-binding protein/permease wht-1 OS=Caenorhabditis elegans GN=wht-1 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 291 bits (744), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 182/572 (31%), Positives = 304/572 (53%), Gaps = 33/572 (5%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127
+ L+ + S+ + + + G I ++G+ + K R F+ QHD+F ++T EHL FMA
Sbjct: 34 TTLMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMA 93
Query: 128 LLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
L++ D+ ++R + +L ++GL T IG + Q LS GE+KRLSFA+E+
Sbjct: 94 RLRMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPN--QLKGLSCGEKKRLSFASEI 151
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
LT P +L CDEPT+GLD+F A +++ +R L + TV+ TIHQPSS + +F+ + L+
Sbjct: 152 LTCPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMTVIITIHQPSSHVYSLFNNVCLM 210
Query: 247 ADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEF 306
A R ++G D A+ E GYPCP YNPAD LI++LAV +D +S + + +I F
Sbjct: 211 ACGRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGF 270
Query: 307 SVCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFW--------FTIIYVLISRSFLN 358
D + V L I + F+ ++ + K F+ +T L RS+L
Sbjct: 271 LSTDLGQSV-LAIGNANKLRAASFVTGSDTSEKTKTFFNQDYNASFWTQFLALFWRSWLT 329
Query: 359 VVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVL 418
V+RDP + +L Q + TA + G+ F + +T + S+ G +F + F +
Sbjct: 330 VIRDPNLLSVRLLQILITAFITGIVFFQT-PVTPATIISINGIMFNHIRNMNF------M 382
Query: 419 SQFPDM------LPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLR 472
QFP++ LP+ RE ++G+Y ++L+ ++ LP II +L+ I+YW+SGL
Sbjct: 383 LQFPNVPVITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLY 442
Query: 473 NSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSS 532
+ + A L+ ILI NVA S + F++ AM L F +M G F +
Sbjct: 443 PNFWNYCFASLVTILITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDA 502
Query: 533 LPPYFVWIRYLSWLEYSNEALTITQWQGVTNI-TCFDNPDLP-----CLEDGAQVINNMN 586
+P YF W+ LS+ +Y EAL I +W + I CF++ C ++G QV+ +++
Sbjct: 503 IPSYFKWLSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPKNGHQVLESID 562
Query: 587 FSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618
FS + ++ + ++ +A++ LL++S
Sbjct: 563 FSASHKIFDISILFGMFIGIRIIAYVALLIRS 594
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q09466|WHT3_CAEEL ABC transporter ATP-binding protein/permease wht-3 OS=Caenorhabditis elegans GN=wht-3 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 286 bits (731), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 168/537 (31%), Positives = 283/537 (52%), Gaps = 30/537 (5%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
+G ++VNG + + GF Q ++F P+LTV E+L A L++ + + R ++
Sbjct: 98 NGTVKVNGTKIGKEISLISGFAQQQEIFIPTLTVDEYLMIQARLRM--KANKHTRRERVD 155
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
++ L L N + +IG+ + + + SGGE +RL+FA ELL++P+LL DEPT+GLDSF
Sbjct: 156 EIIEMLRLQNCRDLKIGTPGLVKGI--SGGEARRLTFACELLSNPSLLFADEPTSGLDSF 213
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265
A+ ++++++ L + + IHQP++EL FDKII L+ +TAF+G+ ++ F
Sbjct: 214 MAASVVQILKNLANSGR----TLIHQPTAELFFQFDKIIFLSMGKTAFMGTPHESVKFFA 269
Query: 266 SQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICD--EFSVCDFAKEVDLEINYQT 323
G+P P +NP +++ L+V N+E SR + +I + E S+ V++ + T
Sbjct: 270 DCGHPIPKLFNPPEWIQSKLSVIPNNETKSRETIGKIIEFYEKSIIHQKSIVEIRVIATT 329
Query: 324 HVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLC 383
+ Y I+ P +F L+ R+ L+V+R PA KL QKV L G
Sbjct: 330 ELPPY----------IENPGFFAETGALLKRACLDVIRSPAQMRMKLIQKVVMGLFIGSL 379
Query: 384 FAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFY 443
+ L RGV++ AL+ ++ E TFS M+ +++ LPL REY GL+ +Y
Sbjct: 380 YWQQ-PLDPRGVRNTNSALYFLIAELTFSTMFGIMTFMEHELPLIAREYHDGLFYVISYY 438
Query: 444 LSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAF 503
+S LS LP I L VI YW+ GL ++ ++LI +L+ ATSCG+ + F
Sbjct: 439 ISRFLSYLPLFTIDGALMIVISYWMIGLNSTWQQVAKSILISVLVEQSATSCGLFLACLF 498
Query: 504 SSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTN 563
+ S A+A VP + +G++ ++ P Y W+++ SW Y E L + QW V
Sbjct: 499 ETTSLAIAFAVPASGLFALLSGLYGNTNNFPVYIRWMQWTSWCRYGFEGLVVNQWSQV-- 556
Query: 564 ITCFDNPDL-PCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
DNP P + ++ +F+ DN ++I + + F+ ++ L ++ R
Sbjct: 557 ----DNPKWDPFYRE--LILKQFSFNKDNYQLDVIGLCSIVIFFYLAGYIALFIRIR 607
|
Required for efficient RNA interference (RNAi) of pop-1 indicating a role in the germline development. Caenorhabditis elegans (taxid: 6239) |
| >sp|P12428|BROWN_DROME Protein brown OS=Drosophila melanogaster GN=bw PE=2 SV=1 | Back alignment and function description |
|---|
Score = 239 bits (611), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 175/600 (29%), Positives = 264/600 (44%), Gaps = 97/600 (16%)
Query: 85 IDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+ GD+ +NG +E + F+ Q ++ + T YEHLYFM+ K+ RR ++
Sbjct: 87 LTGDVVLNGMAMERHQMTRISSFLPQFEINVKTFTAYEHLYFMSHFKMHRRTTKAEKRQR 146
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL- 202
+ LL+ +GL ++ HTRI LSGGERKRLS A EL+TDP L CDEPTTGL
Sbjct: 147 VADLLLAVGLRDAAHTRIQQ--------LSGGERKRLSLAEELITDPIFLFCDEPTTGLD 198
Query: 203 -------------------------------DSF------------------------SA 207
DSF S
Sbjct: 199 SFSAYSVIKTLRHLCTRRRIAKHSLNQVYGEDSFETPSGESSASGSGSKSIEMEVVAESH 258
Query: 208 SKLIRMMREL----------TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
L++ MREL KK +C+IHQP+S++ ++F IIL+ R + G
Sbjct: 259 ESLLQTMRELPALGVLSNSPNGTHKKAAICSIHQPTSDIFELFTHIILMDGGRIVYQGRT 318
Query: 258 DAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSS---RRRLKRICDEFSVCDFAKE 314
+ A F GY P NPADF +K+LA E + R + + D +
Sbjct: 319 EQAAKFFTDLGYELPLNCNPADFYLKTLADKEGKENAGAVLRAKYEHETDGLYSGSWLLA 378
Query: 315 VDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKV 374
+Y HV + KK W +Y+L+ R +R+ L +
Sbjct: 379 RSYSGDYLKHV-----------QNFKKIRWIYQVYLLMVRFMTEDLRNIRSGLIAFGFFM 427
Query: 375 ATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSS 434
TA+ L ++G LTQR VQ V G++F++ E F+ Y V FP LP+ RE
Sbjct: 428 ITAVTLSLMYSGIGGLTQRTVQDVGGSIFMLSNEMIFTFSYGVTYIFPAALPIIRREVGE 487
Query: 435 GLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW-ISGLRNSLSVFLMAVLICILIINVAT 493
G YS +Y++ +LS +P + +F ++Y I R L M L+ + + A
Sbjct: 488 GTYSLSAYYVALVLSFVPVAFFKGYVFLSVIYASIYYTRGFLLYLSMGFLMSLSAV-AAV 546
Query: 494 SCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEAL 553
G+ S F S A C PFD +I G + + ++P ++YLS YSNEAL
Sbjct: 547 GYGVFLSSLFESDKMASECAAPFDLIFLIFGGTYMNVDTVPG----LKYLSLFFYSNEAL 602
Query: 554 TITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDN--LYPNLIAMVVLYFAFHTLAF 611
W + NI C N D PC++ G +V+ ++ + + + ++VV+ FH ++F
Sbjct: 603 MYKFWIDIDNIDCPVNEDHPCIKTGVEVLQQGSYRNADYTYWLDCFSLVVVAVIFHIVSF 662
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine. Drosophila melanogaster (taxid: 7227) |
| >sp|Q24739|BROWN_DROVI Protein brown OS=Drosophila virilis GN=bw PE=2 SV=1 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 168/597 (28%), Positives = 267/597 (44%), Gaps = 95/597 (15%)
Query: 85 IDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+ GD+ +NG +E + F+ + ++ + T Y+ LYFM+ K+ RR ++
Sbjct: 84 LTGDVVLNGMAMERDQMTRISSFLREFEINVKTFTAYDDLYFMSHFKMHRRTTKSEKRQA 143
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
++ LL+ +GL ++ HTRI LSGGERKRLS A EL+TDP L CDEPTTGLD
Sbjct: 144 VSDLLLAVGLRDAAHTRIQQ--------LSGGERKRLSLAEELITDPIFLFCDEPTTGLD 195
Query: 204 SFSA-----------------------------------------------------SKL 210
SFSA L
Sbjct: 196 SFSAYTVIKTLRHLCTRRRIAKHSLTQVYGEDSFATPSDNGSSGSNSIEMEIVDNSHESL 255
Query: 211 IRMMREL----------TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
++ M+EL +KK +C+IHQP+S++ ++F IIL+ R + G + A
Sbjct: 256 LQAMKELPTLGVLNNSPNGTQKKAAICSIHQPTSDIFELFTHIILMDGGRIVYQGRTEQA 315
Query: 261 LAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSS---RRRLKRICDEFSVCDFAKEVDL 317
F ++G+ P NPADF +K+LA + + R + + D + +
Sbjct: 316 AKFF-TEGFMQPKNCNPADFYLKTLADGQGSKNAGELLRAKYEHETDGLYSGSWLLARNY 374
Query: 318 EINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATA 377
+Y HV + KK W +Y+L+ R + + L + TA
Sbjct: 375 SGDYMKHV-----------QNFKKIRWIYQVYLLVIRFMTEDLANIRSGLIGFGFFMTTA 423
Query: 378 LMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLY 437
+ L ++G LTQR VQ V G++F++ E F+ Y V FP LP+ RE + G Y
Sbjct: 424 VTLSLMYSGVGGLTQRTVQDVGGSIFMLSNEMIFTFSYGVTYIFPAALPIIRREVAEGTY 483
Query: 438 SAFQFYLSYILSSLPGLIIQAVLFTVILYW-ISGLRNSLSVFLMAVLICILIINVATSCG 496
S +Y++ +LS +P + +F ++Y I R L M L+ + I A G
Sbjct: 484 SLSAYYVALVLSFVPVAFFKGYMFLSVIYASIYYTRGFLLYITMGFLMSLSAI-AAVGYG 542
Query: 497 IMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTIT 556
+ S F + A C PFD +I G + + S+P ++Y S YSNEAL
Sbjct: 543 VFLSSLFETDKMASECAAPFDLIFLIFGGTYMNVDSVP----LLKYFSLFFYSNEALMYN 598
Query: 557 QWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDN--LYPNLIAMVVLYFAFHTLAF 611
W + NI C N + PC + G +V+ +F + + + +++V+ FH ++F
Sbjct: 599 FWIDIDNIACXVNDEHPCCQTGLEVLQQASFRTADYTFWLDCASLLVVALVFHIVSF 655
|
Part of a membrane-spanning permease system necessary for the transport of pigment precursors into pigment cells responsible for eye color. Brown and white dimerize for the transport of guanine. Drosophila virilis (taxid: 7244) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| 403183451 | 686 | AAEL017106-PA [Aedes aegypti] | 0.856 | 0.776 | 0.505 | 1e-156 | |
| 195428545 | 663 | GK16717 [Drosophila willistoni] gi|19415 | 0.856 | 0.803 | 0.498 | 1e-155 | |
| 170042511 | 679 | scarlet [Culex quinquefasciatus] gi|1678 | 0.856 | 0.784 | 0.501 | 1e-155 | |
| 195135629 | 661 | GI16547 [Drosophila mojavensis] gi|19391 | 0.856 | 0.806 | 0.496 | 1e-154 | |
| 195374926 | 664 | GJ12800 [Drosophila virilis] gi|19415341 | 0.856 | 0.802 | 0.498 | 1e-153 | |
| 91090372 | 640 | PREDICTED: similar to scarlet [Tribolium | 0.876 | 0.851 | 0.483 | 1e-153 | |
| 194750697 | 668 | GF23914 [Drosophila ananassae] gi|190624 | 0.856 | 0.797 | 0.492 | 1e-152 | |
| 195495106 | 667 | GE19858 [Drosophila yakuba] gi|194181227 | 0.856 | 0.799 | 0.490 | 1e-151 | |
| 29164708 | 698 | scarlet [Bactrocera tryoni] gi|29164710| | 0.856 | 0.763 | 0.486 | 1e-151 | |
| 379698902 | 670 | scarlet [Bombyx mori] gi|326784694|dbj|B | 0.855 | 0.794 | 0.502 | 1e-151 |
| >gi|403183451|gb|EJY58108.1| AAEL017106-PA [Aedes aegypti] | Back alignment and taxonomy information |
|---|
Score = 557 bits (1435), Expect = e-156, Method: Compositional matrix adjust.
Identities = 272/538 (50%), Positives = 367/538 (68%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I+ GD+ VNG+P+ GF++Q DLF SLTV EH+YFMA LKLDR V L
Sbjct: 150 IVQGDVLVNGQPIGPYMYRLSGFVHQDDLFVGSLTVTEHMYFMAKLKLDRTVNKSTINRL 209
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL +TRIG + + +LSGGE+KRL+FATELLT P +L CDEPTTGLD
Sbjct: 210 IEELLERTGLSKCANTRIGE--VGEGKMLSGGEKKRLAFATELLTKPTILFCDEPTTGLD 267
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SFSA L+ + +L ++R ++CTIHQPSS+L MFD+++L+AD R AF G + AL F
Sbjct: 268 SFSAQNLVSTL-QLLAKRGTAIICTIHQPSSQLFSMFDQVMLMADGRVAFAGKPNDALIF 326
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
E GY CP YNPA+FLI LA E +S+R +R+CD F+V + A + D+ IN +
Sbjct: 327 FEQHGYSCPSNYNPAEFLIGVLATAPGYEKASQRSAQRLCDLFAVSEAAGQRDVLINLEM 386
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ T DF S +K WF+ + L R+FL VVRDP +Q +L QK+A ALM GL
Sbjct: 387 HMAETGDFKITEESHLSRKSNWFSTTFWLTYRAFLTVVRDPTVQYLRLLQKIAIALMAGL 446
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CF+G+I L Q GVQ++QG LFI V+ENTFSPMYSVLS FPD PLF RE SGLY Q+
Sbjct: 447 CFSGAISLDQLGVQAIQGILFIFVSENTFSPMYSVLSVFPDTFPLFMRETKSGLYRTSQY 506
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ L+ LPGLI + ++F +I YW++ LR + F++ V+ L++NV+T+CG FS A
Sbjct: 507 YVANALAMLPGLIFEPLVFVIIAYWLAALRPTFGAFMVTVIASTLVMNVSTACGCFFSAA 566
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+S+ AMA LVPFDY LMIT+GVF +LSS+P W Y+SW+ Y+NEA++I QW+GV+
Sbjct: 567 FNSLPLAMAYLVPFDYILMITSGVFIQLSSMPKAISWTPYISWMMYANEAMSIAQWEGVS 626
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++P+LPC+ G +V+ + +F +L+ N+ AMVV+YF FH L +FL K++
Sbjct: 627 NITCFVEDPNLPCMRTGEEVLAHYSFDESHLWRNIWAMVVIYFGFHVLGCVFLWRKTK 684
|
Source: Aedes aegypti Species: Aedes aegypti Genus: Aedes Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195428545|ref|XP_002062333.1| GK16717 [Drosophila willistoni] gi|194158418|gb|EDW73319.1| GK16717 [Drosophila willistoni] | Back alignment and taxonomy information |
|---|
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 268/538 (49%), Positives = 369/538 (68%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ + G++YQ DLF +LTV EHL FMA L+LDRRV +R +
Sbjct: 127 VVQGDILINGRRIGPFMHRISGYVYQDDLFIGALTVMEHLNFMAHLRLDRRVSGEERRLI 186
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
IN LL GL+++ HTRIGS K VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 187 INELLERTGLISAAHTRIGSGD--DKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 244
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SFSA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 245 SFSAQQLVATLYEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 303
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
+ GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 304 FANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 363
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G+
Sbjct: 364 HMAQSGNFPFDTEVESFRSVPWYKRFHVVWLRATLTLLRDPTIQWMRFLQKIAMAFIIGI 423
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ +LTQ GVQ+VQGALFIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 424 CFAGTTELTQLGVQAVQGALFIMISENTYHPMYSVLNVFPQGFPLFMRETRSGLYSTAQY 483
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ IL+ LPG+II+ +LF +I YW++GLR++ F + + +L++NVAT+CG FS A
Sbjct: 484 YVANILAMLPGMIIEPLLFVIICYWLTGLRSTFHAFGVTAICVVLVMNVATACGCFFSTA 543
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F K+SSLP F W ++LSW+ Y+NEA+TI QW GV
Sbjct: 544 FNSVPLAMAYLVPLDYIFMITSGIFIKISSLPLAFYWTQFLSWMLYANEAMTIAQWSGVQ 603
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F+ DNLY N++A++ LY FH +A+ L ++
Sbjct: 604 NITCFEESADLPCFHTGQDVLDKYSFNEDNLYRNILAIMGLYLGFHLMAYYCLWRRAH 661
|
Source: Drosophila willistoni Species: Drosophila willistoni Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|170042511|ref|XP_001848966.1| scarlet [Culex quinquefasciatus] gi|167866066|gb|EDS29449.1| scarlet [Culex quinquefasciatus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 270/538 (50%), Positives = 364/538 (67%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I+ GDI VNG+P+ GF++Q DLF SLTV EH+YFMA LKLDR V L
Sbjct: 144 IVQGDILVNGQPIGPYMYRLSGFVHQDDLFVGSLTVSEHMYFMAKLKLDRGVSKASVERL 203
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL TRIG + + +LSGGE+KRL+FATELLT P +L CDEPTTGLD
Sbjct: 204 IQELLERTGLAKCADTRIGE--VGEGKMLSGGEKKRLAFATELLTKPTILFCDEPTTGLD 261
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SFSA L+ + +L ++R ++CTIHQPSS+L MFD+++LLAD R A+ G + AL F
Sbjct: 262 SFSAQNLVSTL-QLLAKRGTAIICTIHQPSSQLFSMFDQVMLLADGRVAYAGKPNDALGF 320
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
E GY CP YNPA+FLI LA E +S+R R+CD F+V + A + D+ IN +
Sbjct: 321 FEQHGYSCPSNYNPAEFLIGVLATAPGYEKASQRSAHRLCDLFAVSEAAGQRDVLINLEM 380
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ T DF S ++P W +Y L RSFL VVRDP +Q +L QK+ ALM GL
Sbjct: 381 HMAETGDFKVTEESHLSRRPRWLHTLYWLTYRSFLTVVRDPTVQYLRLLQKIGIALMAGL 440
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CF+G+I+L Q GVQ++QG LFI V+ENTFSPMYSVLS FP+ PLF RE SGLY Q+
Sbjct: 441 CFSGAINLDQLGVQAIQGILFIFVSENTFSPMYSVLSVFPETFPLFMRETKSGLYHTSQY 500
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ +L+ LPGLI + ++F ++ YW++ LR + + FL+ V+ L++NV+T+CG FS A
Sbjct: 501 YVANMLAMLPGLIAEPLIFVIVAYWLAQLRPTFTAFLVTVIASTLVMNVSTACGCFFSAA 560
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+S+ AMA LVPFDY LMIT+GVF ++ S+P W+ Y+SW+ Y+NEA++I QW+GVT
Sbjct: 561 FNSLPLAMAYLVPFDYILMITSGVFIQIGSMPVSISWMPYISWMLYANEAMSIAQWEGVT 620
Query: 563 NITC-FDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITC ++P+LPC+ G +V+ + +F+ +L N+ AMV +YF FH L FL K+R
Sbjct: 621 NITCSTEDPNLPCMRTGTEVLTHYSFNESHLARNIWAMVAIYFVFHVLGCFFLWRKTR 678
|
Source: Culex quinquefasciatus Species: Culex quinquefasciatus Genus: Culex Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195135629|ref|XP_002012235.1| GI16547 [Drosophila mojavensis] gi|193918499|gb|EDW17366.1| GI16547 [Drosophila mojavensis] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1419), Expect = e-154, Method: Compositional matrix adjust.
Identities = 267/538 (49%), Positives = 365/538 (67%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ V G++YQ DLF +LTV EHL FMA L+LDRRV +R +
Sbjct: 125 VVQGDILINGRRVGPFMHRISGYVYQDDLFIGALTVLEHLNFMAHLRLDRRVSREERRLI 184
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL+++ HTRIG+ + VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 185 IKELLERTGLLSASHTRIGNGD--DEKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 242
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S+SA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 243 SYSAQQLVATLHEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 301
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 302 FADHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 361
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G
Sbjct: 362 HMAQSGNFPYDTELDSFRGVAWYKRFHVVWLRATLTLLRDPTIQWMRFLQKMAMAFIIGA 421
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ +LTQ GVQ+VQG LFIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 422 CFAGTTELTQLGVQAVQGTLFIMISENTYHPMYSVLNVFPQGFPLFMRETRSGLYSTAQY 481
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ IL+ LPG+II+ +LF VI YW++GLR + F + + +L++NVAT+CG FS A
Sbjct: 482 YVANILAMLPGMIIEPLLFVVICYWLTGLRATFYAFSITAICVVLVMNVATACGCFFSTA 541
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY +MIT+G+F K+SSLP F W +++SW+ Y+NEA+TI QW GV
Sbjct: 542 FNSVPLAMAYLVPLDYIIMITSGIFIKISSLPAAFYWTQFISWMLYANEAMTIAQWSGVE 601
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F NLY NL+A+V +YF FH L + FL ++R
Sbjct: 602 NITCFGESADLPCFHTGQDVLDKYSFEESNLYRNLLAIVGIYFGFHVLGYYFLWRRAR 659
|
Source: Drosophila mojavensis Species: Drosophila mojavensis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195374926|ref|XP_002046254.1| GJ12800 [Drosophila virilis] gi|194153412|gb|EDW68596.1| GJ12800 [Drosophila virilis] | Back alignment and taxonomy information |
|---|
Score = 549 bits (1415), Expect = e-153, Method: Compositional matrix adjust.
Identities = 268/538 (49%), Positives = 367/538 (68%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ V G++YQ DLF +LTV EHL FMA L+LDRRV + +R +
Sbjct: 128 VVQGDILINGRRVGPFMHRISGYVYQDDLFIGALTVLEHLNFMANLRLDRRVSSEERRLI 187
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL+++ +TRIG + VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 188 IRELLERTGLLSASNTRIGCGD--DEKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 245
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S+SA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 246 SYSAQQLVATLHEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 304
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 305 FADHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 364
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ YV+ R+ L ++RDP +Q + QK+A A + G
Sbjct: 365 HMAQSGNFPYDTELDSFRGVAWYRRFYVVWLRATLTLLRDPTVQWMRFLQKMAMAFIIGA 424
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ +LTQ GVQ+VQG +FIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 425 CFAGTTELTQLGVQAVQGTIFIMISENTYHPMYSVLNIFPQGFPLFMRETRSGLYSTAQY 484
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ IL+ LPG+II+ +LF VI YWI+GLR +L F + + +L++NVAT+CG FS A
Sbjct: 485 YVANILAMLPGMIIEPLLFVVICYWITGLRATLYAFGITAICVVLVMNVATACGCFFSTA 544
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY +MIT+G+F K+SSLP F W ++LSW+ Y+NEA+TI QW GV
Sbjct: 545 FNSVPLAMAYLVPLDYIIMITSGIFIKISSLPVAFYWTQFLSWMLYANEAMTIAQWSGVQ 604
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +FS NLY NL+A++ +YF FH L + FL ++R
Sbjct: 605 NITCFGESADLPCFHTGQDVLDKYSFSESNLYRNLLAILGIYFGFHLLGYYFLWRRAR 662
|
Source: Drosophila virilis Species: Drosophila virilis Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91090372|ref|XP_968696.1| PREDICTED: similar to scarlet [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 548 bits (1411), Expect = e-153, Method: Compositional matrix adjust.
Identities = 271/560 (48%), Positives = 378/560 (67%), Gaps = 15/560 (2%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128
S L+ ++ ++GD+ +NG+P+ + GFM+Q D+F SLTV EH+ MA
Sbjct: 89 STLMSTLAHRITGGAFVEGDVLINGRPIGNYMKYISGFMHQEDIFIGSLTVSEHMNIMAR 148
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
LKLDR+ +R + I+ +L LGL +TRIG + + VLSGGE+KRL+FATELLT
Sbjct: 149 LKLDRKTTQQERNSKIHEILKSLGLTKCLNTRIGING--ESKVLSGGEKKRLAFATELLT 206
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
DP +L CDEPTTGLDS+SA K++ MM + S KT+LCTIHQPSS++ MF ++IL+AD
Sbjct: 207 DPPILFCDEPTTGLDSYSAQKIVTMMNTMASS-GKTILCTIHQPSSDIFAMFSQLILMAD 265
Query: 249 SRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 308
R AFIGS +AL F + GY CP YNPADF IK+LA T E +S++ +KRICD F+V
Sbjct: 266 GRIAFIGSAASALDFFQKAGYRCPTSYNPADFFIKTLATTPGFEENSKQCIKRICDYFAV 325
Query: 309 CDFAKEVDLEINYQTHVGT------YDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRD 362
D+ KEV++ + Y+ H+G Y +FN + F++ +Y L R FL++ RD
Sbjct: 326 SDYNKEVNVVVQYEFHMGRAVESKIYKLRTNFN-----EMFFWQKLYWLTYRWFLDLWRD 380
Query: 363 PAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFP 422
P +Q +K+ +K+ +M GLC+ G+ TQ G+Q+V+G +F++V+ENTF+PMYS+L +FP
Sbjct: 381 PTLQATKISEKIVIGIMIGLCYLGTDFTTQVGIQNVEGIIFLLVSENTFTPMYSILDEFP 440
Query: 423 DMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAV 482
PLF REY+SGLYS+F ++LS I++ LPGLII+ +LF +I+YW+SGLR + FLM
Sbjct: 441 QKYPLFLREYNSGLYSSFLYFLSRIMAMLPGLIIEPILFVIIVYWLSGLRATTYAFLMTT 500
Query: 483 LICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRY 542
L IL +N A +CGI FS AF SV AMA LVPFDY LM+T+GVF KLS+LP F W +Y
Sbjct: 501 LAGILTLNSAAACGIFFSNAFDSVPAAMAYLVPFDYVLMLTSGVFVKLSTLPRVFSWTKY 560
Query: 543 LSWLEYSNEALTITQWQGVTNITC-FDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVV 601
LSWL YS E+++ QW G+ NITC + ++PCL QV+ +FS DNL +L +M+
Sbjct: 561 LSWLMYSTESISTVQWNGIKNITCDISDQEIPCLTADTQVLEKYSFSEDNLSRDLWSMLF 620
Query: 602 LYFAFHTLAFLFLLMKSRPK 621
L FH L+F+ L +K R +
Sbjct: 621 LCIIFHCLSFICLWLKIRKR 640
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|194750697|ref|XP_001957666.1| GF23914 [Drosophila ananassae] gi|190624948|gb|EDV40472.1| GF23914 [Drosophila ananassae] | Back alignment and taxonomy information |
|---|
Score = 546 bits (1407), Expect = e-152, Method: Compositional matrix adjust.
Identities = 265/538 (49%), Positives = 366/538 (68%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ + G++YQ DLF SLTV EHL FMA L+LDRRV +R +
Sbjct: 132 VVQGDILINGRRIGPFMHRISGYVYQDDLFIGSLTVLEHLNFMAHLRLDRRVSKDERRLI 191
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
IN LL GL+++ HTRIGS K VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 192 INELLERTGLLSAAHTRIGSGD--DKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 249
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SFSA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 250 SFSAQQLVATLYEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 308
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
+ GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 309 FANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 368
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G
Sbjct: 369 HMAQSGNFPFDSEVESFRSVAWYKRFHVVWMRASLTLLRDPTIQWMRFIQKIAMAFIIGA 428
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ + +Q GVQ+VQGALFIM++ENT+ PMYSVL+ FP PLF RE SGLYS + +
Sbjct: 429 CFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTWHY 488
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y + IL+ LPG+I++ +LF +I YW++GLR++ F + + +L++NVAT+CG FS A
Sbjct: 489 YAANILALLPGMILEPLLFVIICYWLTGLRSTFYAFGVTAICVVLVMNVATACGCFFSTA 548
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F +++SLP F W ++LSW+ Y+NEA+TI QW GV
Sbjct: 549 FNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTIAQWSGVQ 608
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F+ N+Y N++AMV LYF FH L + L ++R
Sbjct: 609 NITCFQESADLPCFHTGQDVLDKYSFNESNIYRNILAMVGLYFGFHLLGYYCLWRRAR 666
|
Source: Drosophila ananassae Species: Drosophila ananassae Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195495106|ref|XP_002095126.1| GE19858 [Drosophila yakuba] gi|194181227|gb|EDW94838.1| GE19858 [Drosophila yakuba] | Back alignment and taxonomy information |
|---|
Score = 543 bits (1398), Expect = e-151, Method: Compositional matrix adjust.
Identities = 264/538 (49%), Positives = 365/538 (67%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ + G++YQ DLF +LTV EHL FMA L+LDRRV +R +
Sbjct: 131 VVQGDILINGRRIGPFMHRISGYVYQDDLFLGTLTVLEHLNFMAHLRLDRRVSKEERRLI 190
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
IN LL GL+++ HTRIGS K VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 191 INELLERTGLLSAAHTRIGSGD--DKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 248
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S+SA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 249 SYSAQQLVATLYEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 307
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
+ GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 308 FANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 367
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G
Sbjct: 368 HMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFVQKIAMAFIIGA 427
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ + +Q GVQ+VQGALFIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 428 CFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQY 487
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y + IL+ LPG+II+ ++F +I YW++GLR++ F + + +L++NVAT+CG FS A
Sbjct: 488 YAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTA 547
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F +++SLP F W ++LSW+ Y+NEA+T QW GV
Sbjct: 548 FNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ 607
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F+ N+Y NL+AMV LYF FH L + L ++R
Sbjct: 608 NITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMVGLYFGFHLLGYYCLWRRAR 665
|
Source: Drosophila yakuba Species: Drosophila yakuba Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|29164708|gb|AAO65145.1| scarlet [Bactrocera tryoni] gi|29164710|gb|AAO65146.1| scarlet [Bactrocera tryoni] | Back alignment and taxonomy information |
|---|
Score = 542 bits (1397), Expect = e-151, Method: Compositional matrix adjust.
Identities = 262/538 (48%), Positives = 364/538 (67%), Gaps = 5/538 (0%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I+ GDI +NG+ + G++YQ DLF +LTV EH+ FMA L+LDRRV +R +
Sbjct: 162 IVQGDILINGRRIGPFMHRISGYVYQDDLFIDTLTVLEHMTFMAHLRLDRRVSRRERKEI 221
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
IN LL GL++ HT IGS K +LSGGERKRL+FA ELL DP +L CDEPTTGLD
Sbjct: 222 INDLLERTGLLSVAHTHIGSGD--DKKMLSGGERKRLAFAVELLNDPVILFCDEPTTGLD 279
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SFSA +L++ + +L +++ T+LCTIHQPSS+L DMF+ ++LLAD R AF GS AL F
Sbjct: 280 SFSAQQLVQTLYDL-AKKGTTILCTIHQPSSQLFDMFNNVLLLADGRVAFTGSPQNALNF 338
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
GY CP YNPADFLI LA E +S+R + +CD F+V AK+ D+ +N +
Sbjct: 339 FAENGYHCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDMFAVSGAAKQRDMLVNLEI 398
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ T D+ D + W+ +++ R+ L+++RDP +Q + FQK+A A++ G
Sbjct: 399 HMAQTGDYPFDVEVDTFRSAAWYKKFHMIWYRASLSLMRDPTVQRMRFFQKMAMAVIIGA 458
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+I ++Q GVQ+VQGALF+M++ENT+ PMYSVL+ FP PLF RE SG+YS Q+
Sbjct: 459 CFAGTITVSQLGVQAVQGALFVMISENTYHPMYSVLNAFPQGFPLFLRETRSGMYSTAQY 518
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y++ I + LPG+II+ +LF +I YWI+GLR + F + + +L++NVAT+CG FS A
Sbjct: 519 YVANIRAMLPGMIIEPLLFVIICYWITGLRATFFAFSITAISIVLVMNVATACGCFFSTA 578
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F K+S+LP F W + LSW+ Y+NEA+TI QW G
Sbjct: 579 FNSVPLAMAYLVPVDYIFMITSGIFIKISTLPMAFYWTQSLSWMLYANEAMTIAQWSGSQ 638
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619
NITCF ++ DLPC G V++ +F+ NLY NL+A+V +YF FH L + L +++
Sbjct: 639 NITCFEESEDLPCFHTGQDVLDKYSFNESNLYRNLLAIVAIYFGFHILGYYCLWRRAK 696
|
Source: Bactrocera tryoni Species: Bactrocera tryoni Genus: Bactrocera Family: Tephritidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|379698902|ref|NP_001243922.1| scarlet [Bombyx mori] gi|326784694|dbj|BAK08373.1| scarlet [Bombyx mori] | Back alignment and taxonomy information |
|---|
Score = 541 bits (1394), Expect = e-151, Method: Compositional matrix adjust.
Identities = 274/545 (50%), Positives = 373/545 (68%), Gaps = 13/545 (2%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+IDG+I +NG+PV G+M+Q D+F+ +LTV EHL MA L++DRR R
Sbjct: 132 VIDGEIIMNGRPVCSYVDRESGYMHQDDIFAENLTVIEHLTVMARLRMDRRTSTVARKRR 191
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+N L+ +L L S+ TRIG + LSGGERKRL+FATELLTDP LL CDEPTTGLD
Sbjct: 192 VNQLMRQLSLYESRFTRIGG--LDGHKTLSGGERKRLAFATELLTDPGLLFCDEPTTGLD 249
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S SA KL+ ++R +Q KTV+CTIHQPSSEL+ FDK++LLA+ R AF G+ AAL F
Sbjct: 250 SSSALKLVSLLRASAAQ-GKTVICTIHQPSSELMAHFDKLVLLAEGRIAFAGNASAALGF 308
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
ES GY CP YNP D+ IK LA+T E +SR +K ICD F+V D AKE+D+EI+ +
Sbjct: 309 FESLGYHCPLTYNPTDYFIKVLALTPGSEAASRHAIKSICDRFAVSDVAKELDMEIHLEY 368
Query: 324 HVGTYDFLADFNSRKIK-----KPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATAL 378
H+ + +SR+++ P ++T I L+ R L ++RDP +QL ++ QK+A AL
Sbjct: 369 HLMDNEVE---DSRRLRGDSFRPPHFYTKIMWLVYRYLLMIIRDPRVQLVRILQKLAIAL 425
Query: 379 MCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYS 438
G+CF G+ LTQ GVQ VQGALFI++ ENTFSPMYSVL FP+ PLF+RE +GLYS
Sbjct: 426 TAGVCFLGTPRLTQAGVQDVQGALFIIIAENTFSPMYSVLHMFPEEFPLFNRELKAGLYS 485
Query: 439 AFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIM 498
+Y + +++ PGL+I+ VLFT ++YW++GLR S + + I IL++NVA +CG
Sbjct: 486 TPVYYTARMIALFPGLLIEPVLFTGVVYWLAGLRYSAYAIGLTIFISILVLNVAIACGSF 545
Query: 499 FSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558
FS AF S+ A+A LVPFDY+LM+T+G+F KLSS+P Y WIRYLSWL YSNEA++I QW
Sbjct: 546 FSCAFGSMPLAIAYLVPFDYSLMMTSGIFIKLSSIPRYVAWIRYLSWLMYSNEAMSIVQW 605
Query: 559 QGVTNITCF--DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616
GV NITC ++ +PC+ G +V+ +F+ NL+ ++ A+++LY FH LA L L
Sbjct: 606 DGVENITCTNSNSTGVPCVSTGDEVLMQYDFTSSNLWLDISALLLLYITFHLLALLALRY 665
Query: 617 KSRPK 621
++R K
Sbjct: 666 RTRRK 670
|
Source: Bombyx mori Species: Bombyx mori Genus: Bombyx Family: Bombycidae Order: Lepidoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 622 | ||||||
| FB|FBgn0003515 | 666 | st "scarlet" [Drosophila melan | 0.826 | 0.771 | 0.491 | 4.8e-133 | |
| FB|FBgn0003996 | 687 | w "white" [Drosophila melanoga | 0.840 | 0.761 | 0.370 | 1e-91 | |
| WB|WBGene00007513 | 610 | wht-2 [Caenorhabditis elegans | 0.821 | 0.837 | 0.351 | 1.2e-81 | |
| WB|WBGene00012925 | 619 | wht-8 [Caenorhabditis elegans | 0.832 | 0.836 | 0.335 | 3.4e-77 | |
| WB|WBGene00021535 | 684 | wht-7 [Caenorhabditis elegans | 0.572 | 0.520 | 0.305 | 1.8e-76 | |
| UNIPROTKB|E3LWM9 | 654 | Cre-wht-1 "CRE-WHT-1 protein" | 0.823 | 0.782 | 0.334 | 2.8e-73 | |
| WB|WBGene00015479 | 598 | wht-1 [Caenorhabditis elegans | 0.823 | 0.856 | 0.332 | 2e-72 | |
| UNIPROTKB|Q11180 | 598 | wht-1 "ABC transporter ATP-bin | 0.823 | 0.856 | 0.332 | 2e-72 | |
| WB|WBGene00007060 | 613 | wht-6 [Caenorhabditis elegans | 0.765 | 0.776 | 0.308 | 4.1e-65 | |
| WB|WBGene00017179 | 567 | wht-4 [Caenorhabditis elegans | 0.768 | 0.843 | 0.293 | 6e-64 |
| FB|FBgn0003515 st "scarlet" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1304 (464.1 bits), Expect = 4.8e-133, P = 4.8e-133
Identities = 255/519 (49%), Positives = 352/519 (67%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
++ GDI +NG+ + G++YQ DLF SLTV EHL FMA L+LDRRV +R +
Sbjct: 130 VVQGDILINGRRIGPFMHRISGYVYQDDLFLGSLTVLEHLNFMAHLRLDRRVSKEERRLI 189
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I LL GL+++ TRIGS K VLSGGERKRL+FA ELL +P +L CDEPTTGLD
Sbjct: 190 IKELLERTGLLSAAQTRIGSGD--DKKVLSGGERKRLAFAVELLNNPVILFCDEPTTGLD 247
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
S+SA +L+ + EL +Q+ T+LCTIHQPSS+L D F+ ++LLAD R AF GS AL+F
Sbjct: 248 SYSAQQLVATLYEL-AQKGTTILCTIHQPSSQLFDNFNNVMLLADGRVAFTGSPQHALSF 306
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
+ GY CP YNPADFLI LA E +S+R + +CD+F+V AK+ D+ +N +
Sbjct: 307 FANHGYYCPEAYNPADFLIGVLATDPGYEQASQRSAQHLCDQFAVSSAAKQRDMLVNLEI 366
Query: 324 HVG-TYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
H+ + +F D + W+ +V+ R+ L ++RDP IQ + QK+A A + G
Sbjct: 367 HMAQSGNFPFDTEVESFRGVAWYKRFHVVWLRASLTLLRDPTIQWLRFIQKIAMAFIIGA 426
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
CFAG+ + +Q GVQ+VQGALFIM++ENT+ PMYSVL+ FP PLF RE SGLYS Q+
Sbjct: 427 CFAGTTEPSQLGVQAVQGALFIMISENTYHPMYSVLNLFPQGFPLFMRETRSGLYSTGQY 486
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
Y + IL+ LPG+II+ ++F +I YW++GLR++ F + + +L++NVAT+CG FS A
Sbjct: 487 YAANILALLPGMIIEPLIFVIICYWLTGLRSTFYAFGVTAMCVVLVMNVATACGCFFSTA 546
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F+SV AMA LVP DY MIT+G+F +++SLP F W ++LSW+ Y+NEA+T QW GV
Sbjct: 547 FNSVPLAMAYLVPLDYIFMITSGIFIQVNSLPVAFWWTQFLSWMLYANEAMTAAQWSGVQ 606
Query: 563 NITCF-DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMV 600
NITCF ++ DLPC G V++ +F+ N+Y NL+AMV
Sbjct: 607 NITCFQESADLPCFHTGQDVLDKYSFNESNVYRNLLAMV 645
|
|
| FB|FBgn0003996 w "white" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 914 (326.8 bits), Expect = 1.0e-91, P = 1.0e-91
Identities = 198/534 (37%), Positives = 305/534 (57%)
Query: 91 VNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI 149
+NG+PV+ K ++ C ++ Q DLF SLT EHL F A++++ R + QR+A ++ ++
Sbjct: 161 LNGQPVDAKEMQARCAYVQQDDLFIGSLTAREHLIFQAMVRMPRHLTYRQRVARVDQVIQ 220
Query: 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
EL L QHT IG + LSGGERKRL+FA+E LTDP LL+CDEPT+GLDSF+A
Sbjct: 221 ELSLSKCQHTIIGVPGRVKG--LSGGERKRLAFASEALTDPPLLICDEPTSGLDSFTAHS 278
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
+++++++L SQ+ KTV+ TIHQPSSEL ++FDKI+L+A+ R AF+G+ A+ F G
Sbjct: 279 VVQVLKKL-SQKGKTVILTIHQPSSELFELFDKILLMAEGRVAFLGTPSEAVDFFSYVGA 337
Query: 270 PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329
CP YNPADF ++ LAV E+ SR R+ +ICD F++ A+ D+E T
Sbjct: 338 QCPTNYNPADFYVQVLAVVPGREIESRDRIAKICDNFAISKVAR--DMEQLLATK-NLEK 394
Query: 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID 389
L + K WF ++ RS+L+V+++P + +L Q A++ GL F G
Sbjct: 395 PLEQPENGYTYKATWFMQFRAVLWRSWLSVLKEPLLVKVRLIQTTMVAILIGLIFLGQ-Q 453
Query: 390 LTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILS 449
LTQ GV ++ GA+F+ +T TF +++ ++ F LP+F RE S LY ++L ++
Sbjct: 454 LTQVGVMNINGAIFLFLTNMTFQNVFATINVFTSELPVFMREARSRLYRCDTYFLGKTIA 513
Query: 450 SLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTA 509
LP + ++FT I Y + GLR + F + + L+ NV+TS G + S A SS S A
Sbjct: 514 ELPLFLTVPLVFTAIAYPMIGLRAGVLHFFNCLALVTLVANVSTSFGYLISCASSSTSMA 573
Query: 510 MACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT--NITCF 567
++ P ++ G F S+P Y W+ YLSW Y+NE L I QW V I+C
Sbjct: 574 LSVGPPVIIPFLLFGGFFLNSGSVPVYLKWLSYLSWFRYANEGLLINQWADVEPGEISCT 633
Query: 568 DNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVXXXXXXXXXXXXXXMKSRPK 621
+ + C G ++ +NFS +L + + + + +++R K
Sbjct: 634 SS-NTTCPSSGKVILETLNFSAADLPLDYVGLAILIVSFRVLAYLALRLRARRK 686
|
|
| WB|WBGene00007513 wht-2 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 819 (293.4 bits), Expect = 1.2e-81, P = 1.2e-81
Identities = 186/529 (35%), Positives = 297/529 (56%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 130
L+ + LS+ + G ++VNG + + G+ Q +LF +LTV E+L A L+
Sbjct: 77 LLNMLLSRNLRGLETSGSVKVNGHELGRGITAISGYAQQDELFVGTLTVKEYLDIQAKLR 136
Query: 131 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
++ + +R + +++ +LGL Q+TRIG+ QK + SGGE +RL+FA ELL++P
Sbjct: 137 VNGDSEKRRR--RVGNVMSQLGLYKCQNTRIGTIG-GQKGI-SGGEMRRLTFACELLSNP 192
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
++L CDEPTTGLDSF A +++++ L ++ +TV+CTIHQPSS+L MFD+++ +A +
Sbjct: 193 SILFCDEPTTGLDSFMAESVVQVLSNL-AKSGRTVICTIHQPSSQLYLMFDRVMFMAGGK 251
Query: 251 TAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCD 310
TAF+GS A+ F E G+ CP +NPAD +I +LAV N+E R+R++ I +F
Sbjct: 252 TAFLGSPRDAIQFFEDAGFACPRNFNPADLIIHTLAVMPNEEDKCRQRIEVIYTKFQNSS 311
Query: 311 FAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKL 370
+ + + + ++ G S + K T I L+ RS ++ R+P++ +K+
Sbjct: 312 YGRTLKFGVE-KSDEGQRP------SERHKTGI-LTQIGALLERSAIDTWRNPSLTRAKV 363
Query: 371 FQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHR 430
QK L GL + S LT G+ ++ GALF +V E T+S ++ +L+ P PL R
Sbjct: 364 IQKSIMGLFIGLLYLQS-PLTSIGISNLNGALFYLVCELTYSTIFGILNFLPADFPLVSR 422
Query: 431 EYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIIN 490
EY GLYS F +Y++ LS LP ++ ++ YW+ G +S++ L A LI LI
Sbjct: 423 EYHDGLYSVFSYYVARCLSYLPLFTADGLIMLLVSYWMVGFSSSITQVLYACLIAFLIEQ 482
Query: 491 VATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSN 550
+++CGIM S S+ AM+ P L +T G++ + +LP Y WI+YLSW Y
Sbjct: 483 SSSACGIMISCISPSLPIAMSTAGPMLTLLSLTGGLYANVGALPSYISWIQYLSWFRYGF 542
Query: 551 EALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAM 599
EA I QW V N + E V++ ++F + YP+L M
Sbjct: 543 EAFAINQWSSVNE----QNTTIWTDEKRDSVLSQLSFRAEMFYPDLFIM 587
|
|
| WB|WBGene00012925 wht-8 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 777 (278.6 bits), Expect = 3.4e-77, P = 3.4e-77
Identities = 179/534 (33%), Positives = 284/534 (53%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 130
L+ L + + ++G+I VNG+ + S ++ Q DLF +LTV EHL A L+
Sbjct: 76 LLNTLLQRNLRGLQVEGEILVNGQNIGKGVTSVSAYVQQEDLFMGTLTVKEHLDIQAKLR 135
Query: 131 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
L R +N ++ E+ L + +RIG I K +SGGE KRL+FATE++ +P
Sbjct: 136 LPPGTSTTARATRVNEVMNEMLLEKPRDSRIGVPGI--KKGISGGEMKRLAFATEMINNP 193
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
++ CDEPTTGLDS + ++++ + ++ ++ KT++CTIHQPSSE+ ++FDK++ LA R
Sbjct: 194 PIIFCDEPTTGLDSHMSLQVVKTLEQMALEKGKTIICTIHQPSSEVFEIFDKVVFLAQGR 253
Query: 251 TAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCD 310
AF G+ D A+ S GY P NPAD+ I +LA+ ++ + + R + +CD+F
Sbjct: 254 IAFHGAIDEAIHHFSSCGYQVPDHTNPADYFIDTLAIKPSEAEACKSRCQELCDKFEK-S 312
Query: 311 FAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKL 370
F E ++ QT D A P ++Y L R L+ +R+PAI +KL
Sbjct: 313 FYNERLTKLMDQTK----DVRAMTPHHSATYP---VLLYALFYRYMLDNIRNPAIMKAKL 365
Query: 371 FQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHR 430
QK+ L G F G ++ Q G+ S +GALF ++E T+S ++ + + P P R
Sbjct: 366 IQKLFMGLFIGTLFYG-LETDQDGLASYKGALFYYISELTYSTIFGIQAFMPADYPPLVR 424
Query: 431 EYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILII- 489
EY +Y +Y++ I S LP + ++ V Y++ G + VFL + C+ I
Sbjct: 425 EYDDRIYPISAYYIAKICSFLPIFTVDGIILVVSSYFLVGFPSDFGVFLRQIFTCMAIEW 484
Query: 490 NVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYS 549
NVA + GI S + A+ P +T G+F ++ +P + W++YLSW Y
Sbjct: 485 NVA-ALGIAVCATAPSYAIAVTVTGPLLTVFSLTGGLFTNIAEMPAWINWVQYLSWFRYG 543
Query: 550 NEALTITQWQG--VTNITCFDNPDLP-CLEDGAQVINNMNFSPDNLYPNLIAMV 600
E+L + Q+Q NITC N + C + G I N +F NLY N +AM+
Sbjct: 544 YESLVVNQFQHDQFANITCNANMNEQLCEKSGPIAIKNFSFDTANLYTNWVAMI 597
|
|
| WB|WBGene00021535 wht-7 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 458 (166.3 bits), Expect = 1.8e-76, Sum P(2) = 1.8e-76
Identities = 112/367 (30%), Positives = 188/367 (51%)
Query: 243 IILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN-DELSSRRRLKR 301
I ++ + AF GS+ A P P +NP+D + ++++ +E + ++ +
Sbjct: 296 IYMMVNGDVAFCGSQSGAEKMWSEMKLPIPMNFNPSDHYLATMSIRDQAEETLKKNQIGK 355
Query: 302 ICDEFSVCDFAKEVDLEINYQTHVGTYD--FLADFNSR---KIKKP-F---WFTIIYVLI 352
IC F + K V E + + V D F D+ R +P F +F I L
Sbjct: 356 ICTTFKYSELGKSVFKESSGR-EVDERDRAFSEDWRRRYATTFGRPRFGASFFQQIRALT 414
Query: 353 SRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFS 412
R+ V+R+P + + FQ + A++ GL + + + Q+ + ++ G+L+ M++ F
Sbjct: 415 WRASKTVLREPTLLKVQTFQSIIIAILTGLVYTNNSPVDQQKIMNINGSLYQMISNMAFM 474
Query: 413 PMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLR 472
+SV+ F + F+RE SS LY +++S L+ LP I+ AV+FT ILYW+SGL
Sbjct: 475 FQFSVVHHFCLEMNTFYRETSSRLYRVSAYFISKNLAELPSYIVSAVIFTSILYWMSGLV 534
Query: 473 NSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSS 532
+ FL+ +L+ IL+ N+A S G MFS F +V+ A+A + F +M G F +
Sbjct: 535 PIIDSFLIYMLVGILVQNIAISIGYMFSCIFGTVNLAVAVMPIFVVPMMAFGGFFINQDT 594
Query: 533 LPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNL 592
L YFV ++YLS+ Y EA+ I QW V I + C +G V+N+M+F P N
Sbjct: 595 LQWYFVPMKYLSYFGYGYEAVAIAQWTHVEEIPGCSSSLAHCSRNGTDVLNSMSFKPSNF 654
Query: 593 YPNLIAM 599
+ ++ M
Sbjct: 655 WVDISVM 661
|
|
| UNIPROTKB|E3LWM9 Cre-wht-1 "CRE-WHT-1 protein" [Caenorhabditis remanei (taxid:31234)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 179/535 (33%), Positives = 285/535 (53%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
L+ + S+ + + + G I ++GK + K R F+ QHD+F ++T EHL FMA L
Sbjct: 92 LMNVLTSRNLTNLDVQGSILIDGKRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 151
Query: 130 KLDRRVKAYQ-RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
++ + + R +N +L ++GL T IG + Q LS GE+KRL+FA+E+LT
Sbjct: 152 RMGSEYYSEEERETRVNQVLTQMGLQKCADTVIGIPN--QLKGLSCGEKKRLAFASEILT 209
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
P +L CDEPT+GLD+F A +++ +R L + TV+ TIHQPSS++ +F+ + L+A
Sbjct: 210 CPKILFCDEPTSGLDAFMAGHVVQALRRL-ADNGMTVIITIHQPSSQVYSLFNNVCLMAC 268
Query: 249 SRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 308
R ++G D A+ E G+PCP YNPAD LI++LAV +D +S + + +I F
Sbjct: 269 GRVIYLGPGDQAVPLFERCGFPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLS 328
Query: 309 CDFAKEVDLEI---------NYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNV 359
D + V L I ++ T T + F ++ FW T L RS+L V
Sbjct: 329 TDLGQSV-LAIGNANKLRAASFATSSETSEKTKTFFNQDYNASFW-TQFRALFWRSYLTV 386
Query: 360 VRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLS 419
+RDP + +L Q + TAL+ GL F + +T + SV G +F + F + +
Sbjct: 387 IRDPNLLSVRLLQIIITALITGLVFFQT-PVTPATIISVNGIMFNHIRNMNFMLQFPNVP 445
Query: 420 QFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFL 479
LP+ RE ++G+Y ++L+ ++ LP II VL+ I+YW+SGL + +
Sbjct: 446 VITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPVLYNTIVYWLSGLYPNFWNYC 505
Query: 480 MAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVW 539
A L+ ILI NVA S + F++ AM L F +M G F ++P YF W
Sbjct: 506 FASLVTILITNVAISISYAVATIFANTDVAMTVLPIFVVPIMAFGGFFITFDAIPSYFTW 565
Query: 540 IRYLSWLEYSNEALTITQWQGVTNIT-CFDNPDLP-----CLEDGAQVINNMNFS 588
+ LS+ +Y EAL I +W+ + I CF++ C +G +V+ +++FS
Sbjct: 566 LSSLSYFKYGYEALAINEWESIKVIPECFNSSVTAFALNGCPRNGYEVLESIDFS 620
|
|
| WB|WBGene00015479 wht-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 178/535 (33%), Positives = 283/535 (52%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
L+ + S+ + + + G I ++G+ + K R F+ QHD+F ++T EHL FMA L
Sbjct: 36 LMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 95
Query: 130 KL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
++ D+ ++R + +L ++GL T IG + Q LS GE+KRLSFA+E+LT
Sbjct: 96 RMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPN--QLKGLSCGEKKRLSFASEILT 153
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
P +L CDEPT+GLD+F A +++ +R L + TV+ TIHQPSS + +F+ + L+A
Sbjct: 154 CPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMTVIITIHQPSSHVYSLFNNVCLMAC 212
Query: 249 SRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 308
R ++G D A+ E GYPCP YNPAD LI++LAV +D +S + + +I F
Sbjct: 213 GRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLS 272
Query: 309 CDFAKEVDLEINYQTHVGTYDFLADFN-SRKIKK--------PFWFTIIYVLISRSFLNV 359
D + V L I + F+ + S K K FW T L RS+L V
Sbjct: 273 TDLGQSV-LAIGNANKLRAASFVTGSDTSEKTKTFFNQDYNASFW-TQFLALFWRSWLTV 330
Query: 360 VRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLS 419
+RDP + +L Q + TA + G+ F + +T + S+ G +F + F + +
Sbjct: 331 IRDPNLLSVRLLQILITAFITGIVFFQT-PVTPATIISINGIMFNHIRNMNFMLQFPNVP 389
Query: 420 QFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFL 479
LP+ RE ++G+Y ++L+ ++ LP II +L+ I+YW+SGL + +
Sbjct: 390 VITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYC 449
Query: 480 MAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVW 539
A L+ ILI NVA S + F++ AM L F +M G F ++P YF W
Sbjct: 450 FASLVTILITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKW 509
Query: 540 IRYLSWLEYSNEALTITQWQGVTNIT-CFDNPDLP-----CLEDGAQVINNMNFS 588
+ LS+ +Y EAL I +W + I CF++ C ++G QV+ +++FS
Sbjct: 510 LSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPKNGHQVLESIDFS 564
|
|
| UNIPROTKB|Q11180 wht-1 "ABC transporter ATP-binding protein/permease wht-1" [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 732 (262.7 bits), Expect = 2.0e-72, P = 2.0e-72
Identities = 178/535 (33%), Positives = 283/535 (52%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
L+ + S+ + + + G I ++G+ + K R F+ QHD+F ++T EHL FMA L
Sbjct: 36 LMNVLTSRNLTNLDVQGSILIDGRRANKWKIREMSAFVQQHDMFVGTMTAREHLQFMARL 95
Query: 130 KL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
++ D+ ++R + +L ++GL T IG + Q LS GE+KRLSFA+E+LT
Sbjct: 96 RMGDQYYSDHERQLRVEQVLTQMGLKKCADTVIGIPN--QLKGLSCGEKKRLSFASEILT 153
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
P +L CDEPT+GLD+F A +++ +R L + TV+ TIHQPSS + +F+ + L+A
Sbjct: 154 CPKILFCDEPTSGLDAFMAGHVVQALRSL-ADNGMTVIITIHQPSSHVYSLFNNVCLMAC 212
Query: 249 SRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSV 308
R ++G D A+ E GYPCP YNPAD LI++LAV +D +S + + +I F
Sbjct: 213 GRVIYLGPGDQAVPLFEKCGYPCPAYYNPADHLIRTLAVIDSDRATSMKTISKIRQGFLS 272
Query: 309 CDFAKEVDLEINYQTHVGTYDFLADFN-SRKIKK--------PFWFTIIYVLISRSFLNV 359
D + V L I + F+ + S K K FW T L RS+L V
Sbjct: 273 TDLGQSV-LAIGNANKLRAASFVTGSDTSEKTKTFFNQDYNASFW-TQFLALFWRSWLTV 330
Query: 360 VRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLS 419
+RDP + +L Q + TA + G+ F + +T + S+ G +F + F + +
Sbjct: 331 IRDPNLLSVRLLQILITAFITGIVFFQT-PVTPATIISINGIMFNHIRNMNFMLQFPNVP 389
Query: 420 QFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFL 479
LP+ RE ++G+Y ++L+ ++ LP II +L+ I+YW+SGL + +
Sbjct: 390 VITAELPIVLRENANGVYRTSAYFLAKNIAELPQYIILPILYNTIVYWMSGLYPNFWNYC 449
Query: 480 MAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVW 539
A L+ ILI NVA S + F++ AM L F +M G F ++P YF W
Sbjct: 450 FASLVTILITNVAISISYAVATIFANTDVAMTILPIFVVPIMAFGGFFITFDAIPSYFKW 509
Query: 540 IRYLSWLEYSNEALTITQWQGVTNIT-CFDNPDLP-----CLEDGAQVINNMNFS 588
+ LS+ +Y EAL I +W + I CF++ C ++G QV+ +++FS
Sbjct: 510 LSSLSYFKYGYEALAINEWDSIKVIPECFNSSMTAFALDSCPKNGHQVLESIDFS 564
|
|
| WB|WBGene00007060 wht-6 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 663 (238.4 bits), Expect = 4.1e-65, P = 4.1e-65
Identities = 152/492 (30%), Positives = 266/492 (54%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 130
L+ + + + + +G I VNG + K S GF Q +LF +LTV E+L A L+
Sbjct: 77 LLNMLMCRNLKGLSTEGTITVNGNEMAHKISSISGFAQQEELFVGTLTVKEYLMIQAKLR 136
Query: 131 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
++ K R + +L +L L + ++IG I +K +SGGE +RL+FA E+L++P
Sbjct: 137 INGSKKL--REDRVTDVLHQLKLWKCRDSKIGV--IGEKKGISGGEARRLTFACEMLSNP 192
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+LL DEPTTGLDSF A +I++++ + ++ +T++CTIHQPSS+L MF ++I LA+
Sbjct: 193 SLLFADEPTTGLDSFMAESVIQILKGI-AKTGRTIICTIHQPSSQLYQMFHRVIYLANGS 251
Query: 251 TAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCD 310
TAF G+ +++F E G+ P YNP++++I LAV E S R+++I +++ D
Sbjct: 252 TAFQGTPQESISFFEKCGHRVPDEYNPSEWIIYKLAVQPGQEKQSNDRIQKIVEQYEDSD 311
Query: 311 FAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKL 370
K V +++ D ++ + FT I+ L +R ++V R P + L+K+
Sbjct: 312 HQKRVMEQLS--------DVSEKIPPPEMHRANVFTQIFALSTRCGIDVWRAPQLTLAKV 363
Query: 371 FQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHR 430
QK+ L GL + + RG+ ++ GALF + E +S Y+++ + PL R
Sbjct: 364 IQKILFGLFIGLLYLRT-PYDARGIHNINGALFFLAGEYIYSTAYAIMFFLNNEFPLVAR 422
Query: 431 EYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIIN 490
EY GLY+ + +Y + +S +P ++ I+YW+ GL S+ ++A +I +L
Sbjct: 423 EYHDGLYNLWTYYFARCISLIPLFSTDGLILLFIVYWLIGLNTSVMQVIVASIITVLASQ 482
Query: 491 VATSCGIMFSLAFSSVS-TAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYS 549
A++ GI S F + TA+ P + G++ ++ P W++++S ++
Sbjct: 483 AASAFGIAMSCIFPTAQMTAVMASPPL-VLFRLFGGLYGNTNTFPAAIRWLQWISMYRFA 541
Query: 550 NEALTITQWQGV 561
E L + QW +
Sbjct: 542 FEGLVVNQWSEI 553
|
|
| WB|WBGene00017179 wht-4 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 652 (234.6 bits), Expect = 6.0e-64, P = 6.0e-64
Identities = 144/490 (29%), Positives = 264/490 (53%)
Query: 87 GDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
GD+ VNGK + + K R C ++ Q DLF +LTV E L + A +++ + Q++ +
Sbjct: 27 GDVTVNGKKITKQKMRQMCAYVQQVDLFCGTLTVREQLTYTAHMRM-KNATVQQKMERVE 85
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
++L ++ L + Q+T IG + + + + GE+KRL+FA E+LTDP +L CDEPT+GLD+F
Sbjct: 86 NVLRDMNLTDCQNTLIGIPNRMKGISI--GEKKRLAFACEILTDPKILFCDEPTSGLDAF 143
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265
AS+++R + +L + + KT++ +HQPSS + MF K+ +A +T + G+ D F +
Sbjct: 144 MASEVVRALLDLAN-KGKTIIVVLHQPSSTVFRMFHKVCFMATGKTVYHGAVDRLCPFFD 202
Query: 266 SQG--YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
G + P YNPADF++ ++++ E R++ + E+ D ++ +
Sbjct: 203 KLGPDFRVPESYNPADFVMSEISISPETEQEDVTRIEYLIHEYQNSDIGTQMLKKTRTAV 262
Query: 324 -HVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
G Y D + F T +L+ RS RDP + + Q +ATA++ G+
Sbjct: 263 DEFGGYGDDEDDGESRYNSTFG-TQFEILLKRSLRTTFRDPLLLRVRFAQILATAILVGI 321
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
++L +Q+++G ++ + TF + ++ LP+F RE+ S +YS +
Sbjct: 322 V-NWRVELKGPTIQNLEGVMYNCARDMTFLFYFPSVNVITSELPVFLREHKSNIYSVEAY 380
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
+L+ L+ LP I +++ I+YW++GL S++ FL+ V +CI + VA S + +
Sbjct: 381 FLAKSLAELPQYTILPMIYGTIIYWMAGLVASVTSFLVFVFVCITLTWVAVSIAYVGACI 440
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
F + + F +++ G + +S+P Y+ ++ ++SW ++ EAL QW+ +
Sbjct: 441 FGDEGLVVTFMPMFVLPMLVFGGFYVNANSIPVYYQYVSFVSWFKHGFEALEANQWKEID 500
Query: 563 NITCFD--NP 570
I+ D NP
Sbjct: 501 KISGCDLINP 510
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P45843 | SCRT_DROME | No assigned EC number | 0.4888 | 0.8569 | 0.8003 | yes | N/A |
| Q9UNQ0 | ABCG2_HUMAN | No assigned EC number | 0.2875 | 0.8472 | 0.8045 | yes | N/A |
| Q5MB13 | ABCG2_MACMU | No assigned EC number | 0.2864 | 0.8424 | 0.8012 | yes | N/A |
| Q55DA0 | ABCGM_DICDI | No assigned EC number | 0.3107 | 0.8295 | 0.8390 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 622 | |||
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 0.0 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 3e-64 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 6e-48 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 8e-47 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-43 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-42 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-37 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-33 | |
| pfam01061 | 210 | pfam01061, ABC2_membrane, ABC-2 type transporter | 8e-33 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-31 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-23 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 8e-23 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-22 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-22 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 7e-22 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 7e-22 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 1e-20 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-19 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 5e-19 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 7e-19 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 8e-19 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 9e-19 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-18 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-17 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 6e-17 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-17 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-16 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-15 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-15 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 5e-15 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 6e-15 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-14 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-14 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 2e-14 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-14 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-14 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 6e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 1e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-13 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-13 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-13 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 2e-13 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-13 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-13 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-13 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 6e-13 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 6e-13 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-13 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 9e-13 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 9e-13 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 1e-12 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 1e-12 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 3e-12 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-12 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 9e-12 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-11 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-11 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-11 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-11 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 3e-11 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 3e-11 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-11 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 4e-11 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 4e-11 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 4e-11 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 6e-11 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 6e-11 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 7e-11 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 7e-11 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 9e-11 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-10 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 1e-10 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-10 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 3e-10 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-10 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 3e-10 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 3e-10 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 3e-10 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 4e-10 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-10 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-10 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 5e-10 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 7e-10 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 7e-10 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-10 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-09 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 1e-09 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 2e-09 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-09 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 2e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-09 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-09 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 2e-09 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-09 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-09 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 3e-09 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 4e-09 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 4e-09 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 4e-09 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-09 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-09 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 6e-09 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-09 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 8e-09 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-09 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-08 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 1e-08 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-08 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-08 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-08 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 1e-08 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 2e-08 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-08 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-08 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-08 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-08 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-08 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 3e-08 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 3e-08 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-08 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-08 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-08 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-08 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-08 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 6e-08 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 7e-08 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 7e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 9e-08 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-07 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-07 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 1e-07 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-07 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-07 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 2e-07 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-07 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-07 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 2e-07 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-07 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 2e-07 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-07 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 3e-07 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 3e-07 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 3e-07 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 3e-07 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 3e-07 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-07 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-07 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 5e-07 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-07 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 5e-07 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 6e-07 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 7e-07 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 7e-07 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 7e-07 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-07 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 8e-07 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 9e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 9e-07 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 9e-07 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 1e-06 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-06 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 1e-06 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 1e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 2e-06 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-06 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-06 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 2e-06 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 2e-06 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-06 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 3e-06 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 4e-06 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-06 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 5e-06 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 5e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 5e-06 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-06 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-06 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 6e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-06 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-06 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-06 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 7e-06 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 7e-06 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 7e-06 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 8e-06 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 8e-06 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-06 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 1e-05 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-05 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 1e-05 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-05 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 1e-05 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-05 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-05 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 1e-05 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 1e-05 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-05 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 2e-05 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-05 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 2e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-05 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-05 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 3e-05 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 3e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 3e-05 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-05 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 3e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-05 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 4e-05 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 4e-05 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 4e-05 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-05 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 4e-05 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 5e-05 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 5e-05 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 5e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 6e-05 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-05 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 6e-05 | |
| COG0842 | 286 | COG0842, COG0842, ABC-type multidrug transport sys | 6e-05 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 6e-05 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-05 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 8e-05 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 8e-05 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 8e-05 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 9e-05 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-05 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 9e-05 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 1e-04 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 1e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 1e-04 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-04 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-04 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-04 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 2e-04 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-04 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-04 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-04 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-04 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-04 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-04 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-04 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 3e-04 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 3e-04 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-04 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 4e-04 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 4e-04 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-04 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 4e-04 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 5e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 5e-04 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 5e-04 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-04 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 7e-04 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-04 | |
| pfam12698 | 278 | pfam12698, ABC2_membrane_3, ABC-2 family transport | 7e-04 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 7e-04 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 7e-04 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 7e-04 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 8e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-04 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 9e-04 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 9e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 0.001 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 0.001 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 0.001 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 0.001 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 0.001 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 0.001 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.001 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 0.001 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 0.002 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 0.002 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 0.002 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 0.002 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.003 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 0.003 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 0.003 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 0.003 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 0.003 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 0.003 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 0.003 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.004 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 0.004 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 551 bits (1421), Expect = 0.0
Identities = 228/540 (42%), Positives = 328/540 (60%), Gaps = 7/540 (1%)
Query: 85 IDGDIRVNGKPVEGK-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + +NG P++ K R+ ++ Q DLF P+LTV EHL F A L++ RRV ++
Sbjct: 81 GSGSVLLNGMPIDAKEMRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER 140
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
++ +L LGL +TRIG + LSGGERKRL+FA+ELLTDP LL CDEPT+GLD
Sbjct: 141 VDEVLQALGLRKCANTRIGVPG--RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLD 198
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263
SF A ++++++ L +Q+ KT++CTIHQPSSEL ++FDKIIL+A+ R A++GS D A+ F
Sbjct: 199 SFMAYSVVQVLKGL-AQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPF 257
Query: 264 LESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQT 323
G+PCP YNPADF ++ LAV E SR R+++ICD F+V D +++ + N +
Sbjct: 258 FSDLGHPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWS 317
Query: 324 H-VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGL 382
G ++ W+T Y L+ RS+L+V+RDP + +L Q + TA++ GL
Sbjct: 318 GKAGGLVKDSENMEGIGYNASWWTQFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGL 377
Query: 383 CFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQF 442
+ G LTQ+GVQ++ GALF+ +T TF ++ V++ F LP+F RE SGLY +
Sbjct: 378 IYLG-QGLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELPVFLRETRSGLYRVSAY 436
Query: 443 YLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLA 502
+L+ ++ LP II LFT I YW+ GLR+ + FL + + L+ NVATS G + S A
Sbjct: 437 FLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCA 496
Query: 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562
FSS S A+ PF ++ G F S+P YF W+ YLSW Y NE L I QW V
Sbjct: 497 FSSTSMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVD 556
Query: 563 NITCFD-NPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPK 621
NI C N PC G ++ ++F +LY +LI +V+L F F LA+ L ++ R K
Sbjct: 557 NIECTSANTTGPCPSSGEVILETLSFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRK 616
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 223 bits (569), Expect = 3e-64
Identities = 153/540 (28%), Positives = 269/540 (49%), Gaps = 22/540 (4%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G I N + + GF+ Q D+ P LTV E L F +LL+L + + ++I + S
Sbjct: 125 GTILANNRKPTKQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAES 184
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
++ ELGL ++T IG+S I +SGGERKR+S A E+L +P+LL+ DEPT+GLD+ +
Sbjct: 185 VISELGLTKCENTIIGNSFIRG---ISGGERKRVSIAHEMLINPSLLILDEPTSGLDATA 241
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLES 266
A +L+ + L +Q+ KT++ ++HQPSS + MFD +++L++ R F G A+A+ ES
Sbjct: 242 AYRLVLTLGSL-AQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMAYFES 300
Query: 267 QGYPCPYGYNPADFLI-------KSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEI 319
G+ + NPADFL+ ++ V+ ++ + ++ L + +++
Sbjct: 301 VGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLAPKVKAAIEMSH 360
Query: 320 NYQTH---VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVAT 376
Q + VG+ +S +I WF +L+ RS L + + ++FQ +A
Sbjct: 361 FPQANARFVGSASTKEHRSSDRISISTWFNQFSILLQRS-LKERKHESFNTLRVFQVIAA 419
Query: 377 ALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGL 436
AL+ GL + S R VQ G LF + P ++ + FP +F +E +SG+
Sbjct: 420 ALLAGLMWWHS---DFRDVQDRLGLLFFISIFWGVFPSFNSVFVFPQERAIFVKERASGM 476
Query: 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCG 496
Y+ ++++ I+ LP +I +F + YW++GL+ L FL+ +L+ + + V+ G
Sbjct: 477 YTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVLLGYVLVSQGLG 536
Query: 497 IMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTIT 556
+ A A + +V + G FY + LP WI+Y+S YS L
Sbjct: 537 LALGAAIMDAKKA-STIVTVTMLAFVLTGGFY-VHKLPSCMAWIKYISTTFYSYRLLINV 594
Query: 557 QWQGVTNITCFDNPDLPCLEDGA--QVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFL 614
Q+ I+ LP D A + + + ++ ++ ++ + LA+L L
Sbjct: 595 QYGEGKRISSLLGCSLPHGSDRASCKFVEEDVAGQISPATSVSVLIFMFVGYRLLAYLAL 654
|
Length = 659 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 6e-48
Identities = 127/513 (24%), Positives = 216/513 (42%), Gaps = 55/513 (10%)
Query: 86 DGDIRVNGKP---VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--------LDRR 134
+G I +G ++ +R + + D+ P LTV E L F A K + R
Sbjct: 119 EGVITYDGITPEEIKKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSRE 178
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
A + + GL ++++T++G+ + +SGGERKR+S A L +
Sbjct: 179 EYAKHIADVY---MATYGLSHTRNTKVGNDFVRG---VSGGERKRVSIAEASLGGAKIQC 232
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
D T GLDS +A + IR ++ + T L I+Q S + ++FDK+I+L + +
Sbjct: 233 WDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYF 292
Query: 255 GSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDE----LSSRRRLKRICDEFSV-- 308
G D A + E G+ CP ADFL ++T+ E +++ R EF
Sbjct: 293 GPADKAKQYFEKMGFKCPDRQTTADFLT---SLTSPAERQIKPGYEKKVPRTPQEFETYW 349
Query: 309 ------CDFAKEVDLEINYQTHVGTYDFLADFNSRKIKK-------------PFWFTIIY 349
KE+D Y D + + K F + Y
Sbjct: 350 RNSPEYAQLMKEID---EYLDRCSESDTKEAYRESHVAKQSKRTRPSSPYTVSFSMQVKY 406
Query: 350 VLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTEN 409
L R+FL + +P+ L +F + AL+ F ++ S GALF + N
Sbjct: 407 CLA-RNFLRMKGNPSFTLFMVFGNIIMALILSSVFY-NLPKNTSDFYSRGGALFFAILFN 464
Query: 410 TFSPMYSVLSQFPDMLPLF--HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW 467
FS + + S + + P+ HR+Y+ LY ++ I+S +P II++V+F +ILY+
Sbjct: 465 AFSSLLEIASMY-EARPIVEKHRKYA--LYHPSADAIASIISEIPFKIIESVVFNIILYF 521
Query: 468 ISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVF 527
+ R + F +LI + + ++S AM L I G
Sbjct: 522 MVNFRRTAGRFFFYLLILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFA 581
Query: 528 YKLSSLPPYFVWIRYLSWLEYSNEALTITQWQG 560
S+ + WI Y++ L Y+ E+L + ++ G
Sbjct: 582 IPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHG 614
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 163 bits (416), Expect = 8e-47
Identities = 66/174 (37%), Positives = 103/174 (59%), Gaps = 11/174 (6%)
Query: 84 IIDGDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I NG+P + +F+ ++ Q D+ P LTV E L + A+L+L R+ R
Sbjct: 62 TTSGQILFNGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 143 LI-NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ + LL +L TRIG + + +SGGER+R+S A +LL DP +L+ DEPT+G
Sbjct: 122 RVEDVLLRDLA-----LTRIGGNLVKG---ISGGERRRVSIAVQLLWDPKVLILDEPTSG 173
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDSF+A L+ + +L ++R + V+ TIHQP S+L +FD+I+LL+ + G
Sbjct: 174 LDSFTALNLVSTLSQL-ARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 167 bits (424), Expect = 3e-43
Identities = 131/530 (24%), Positives = 230/530 (43%), Gaps = 74/530 (13%)
Query: 76 LSQVIDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR 134
L++ + +I G R VNG+P++ F+ + G++ Q DL P+ TV E L F A L+ +
Sbjct: 809 LAERVTTGVITGGDRLVNGRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKS 868
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
V +++ + ++ L + + +G L+ +RKRL+ EL+ P LLL
Sbjct: 869 VSKSEKMEYVEEVIKLLEMESYADAVVGVPGEG----LNVEQRKRLTIGVELVAKPKLLL 924
Query: 195 -CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252
DEPT+GLDS +A + ++MR+L + + +LCTIHQPS+ L + FD+++LL +T
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKL-ADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983
Query: 253 FIG--SKDAA--LAFLESQGYP-CPYGYNPADFLIK--SLAVTTNDEL--------SSRR 297
+ G +++ + + E G P CP NPA+++++ A + SS
Sbjct: 984 YFGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAHANQDYHEVWRNSSEY 1043
Query: 298 R-----LKRICDEFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLI 352
+ L R+ E S + + D Y W+ VL
Sbjct: 1044 QAVKNELDRLEAELSKAEDDNDPDALSKYAA------------------SLWYQFKLVLW 1085
Query: 353 SRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFS 412
R+F R P SK F + AL G F + +G+Q+ A+F+
Sbjct: 1086 -RTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKV-GTSLQGLQNQMFAVFMA-----TV 1138
Query: 413 PMYSVLSQFPDMLPLF--------HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVI 464
++ Q LP F RE S +S F + I +P ++ +F I
Sbjct: 1139 LFNPLIQQ---YLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFI 1195
Query: 465 LYWISGLRNSLS-------VFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFD 517
Y+ G + S ++ L+ + ++ G ++F+ + A L
Sbjct: 1196 WYYPVGFYWNASKTGQVHERGVLFWLLSTMFFLYFSTLG-QMVISFNPNADNAAVLASLL 1254
Query: 518 YTLMIT-AGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITC 566
+T+ ++ GV S +P +++++ S Y +AL T V +TC
Sbjct: 1255 FTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGLADV-PVTC 1303
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 151 bits (383), Expect = 2e-42
Identities = 61/174 (35%), Positives = 96/174 (55%), Gaps = 42/174 (24%)
Query: 83 CIIDGDIRVNGKPV-EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
+ G++ +NG+P+ + FR G++ Q D+ P+LTV E L F A L+
Sbjct: 62 LGVSGEVLINGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR----------- 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
LSGGERKR+S A EL+++P+LL DEPT+G
Sbjct: 111 -----------------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDS SA +++ ++R L + +T++C+IHQPSSE+ ++FDK++LL+ R + G
Sbjct: 142 LDSSSALQVMSLLRRL-ADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 1e-37
Identities = 61/202 (30%), Positives = 97/202 (48%), Gaps = 18/202 (8%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127
L+++ + G+I V G V K R G++ Q P LTV E+L F A
Sbjct: 47 LLKILAGLLKPT---SGEILVLGYDVVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFA 103
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L + +A +RI LL GL + + ++ + LSGG ++RLS A LL
Sbjct: 104 RLYGLSKEEAEERI---EELLELFGLEDKANKKVRT--------LSGGMKQRLSIALALL 152
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
DP LL+ DEPT+GLD S ++ ++REL + T+L + H E ++ D++I+L
Sbjct: 153 HDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHI-LEEAEELCDRVIILN 211
Query: 248 DSRTAFIGSKDAALAFLESQGY 269
D + G+ + +G
Sbjct: 212 DGKIIAEGTPEELKEKFGGKGV 233
|
Length = 293 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-33
Identities = 147/579 (25%), Positives = 259/579 (44%), Gaps = 105/579 (18%)
Query: 85 IDGDIRVNGKP-VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I+GDIR++G P + F G+ Q+D+ SP +TV E L + A L+L + V +++
Sbjct: 935 IEGDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF 994
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
++ ++ + L N + +G +T LS +RKRL+ A EL+ +P+++ DEPT+GLD
Sbjct: 995 VDEVMELVELDNLKDAIVGLPGVTG---LSTEQRKRLTIAVELVANPSIIFMDEPTSGLD 1051
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIG----SKD 258
+ +A+ ++R +R T +TV+CTIHQPS ++ + FD+++L+ + + G +
Sbjct: 1052 ARAAAIVMRTVRN-TVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPLGRNSH 1110
Query: 259 AALAFLES-QGYP-CPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVD 316
+ + E+ G P YNPA +++ E+SS A EV
Sbjct: 1111 KIIEYFEAIPGVPKIKEKYNPATWML---------EVSS---------------LAAEVK 1146
Query: 317 LEINYQTHVGTYDFLADFNSRKIK---------KPFWFTIIYVLISRSFLNVV------- 360
L I++ H + L N +K +F Y S+S
Sbjct: 1147 LGIDFAEHYKSSS-LYQRNKALVKELSTPPPGASDLYFATQY---SQSTWGQFKSCLWKQ 1202
Query: 361 -----RDPAIQLSKLFQKVATALMCGLCF-------AGSIDLTQRGVQSVQGALFIMVTE 408
R P L + F +A ALM G F + + DLT LF+ +
Sbjct: 1203 WWTYWRSPDYNLVRFFFTLAAALMVGTIFWKVGTKRSNANDLTMVIGAMYAAVLFVGINN 1262
Query: 409 -NTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW 467
+T PM +V +F+RE ++G+YSA + ++ ++ +P ++IQ +T+I+Y
Sbjct: 1263 CSTVQPMVAVERT------VFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYA 1316
Query: 468 ISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVF 527
+ + + F I T G+M +VS L P I A F
Sbjct: 1317 MVAFEWTAAKFFWFYFISFFSFLYFTYYGMM------TVS-----LTPNQQVAAIFAAAF 1365
Query: 528 YKLSSL-----------PPYFVWIRYLSWLEYSNEALTITQWQGV-TNITCFDNPDLPCL 575
Y L +L P ++VW ++ + ++ L ++Q+ V I P +
Sbjct: 1366 YGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIVSQYGDVEDTIKVPGGAPDPTI 1425
Query: 576 EDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFL 614
+ Q ++ + PD + P +A V++ F T+ F F+
Sbjct: 1426 KWYIQ--DHYGYDPDFMGP--VAAVLVGF---TVFFAFI 1457
|
Length = 1470 |
| >gnl|CDD|216273 pfam01061, ABC2_membrane, ABC-2 type transporter | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 8e-33
Identities = 63/212 (29%), Positives = 102/212 (48%), Gaps = 5/212 (2%)
Query: 348 IYVLISRSFLNVVRDP-AIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMV 406
+ L+ R FL RDP L +L Q + AL+ G F T G + G LF +
Sbjct: 3 LKALLKREFLRRWRDPSLGLLWRLIQPLLMALVFGTVFGNL--DTSLGGLNRPGLLFFSI 60
Query: 407 TENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILY 466
N FS + + F + RE +S LYS + L+ IL LP ++QA++F +I+Y
Sbjct: 61 LFNAFSSLTGISPVFIRERGVLERELASPLYSPSAYVLAKILVELPISLLQAIIFLLIVY 120
Query: 467 WISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGV 526
++ GL +S F + +L+ +L A+ G+ + S A L++ +G
Sbjct: 121 FMVGLP--VSRFFLFLLVLLLTALAASGLGLFIAALAPSFEDASQIGPLLLLPLLLLSGF 178
Query: 527 FYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558
F + S+P + WI YL+ L Y+ EAL ++
Sbjct: 179 FIPVDSMPGWLQWIYYLNPLTYAIEALRANEF 210
|
Length = 210 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 5e-31
Identities = 55/172 (31%), Positives = 88/172 (51%), Gaps = 41/172 (23%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRV 135
L+ +I G+I +NG+P++ F+ + G++ Q D+ SP+LTV E L F ALL+
Sbjct: 53 LAGRKTAGVITGEILINGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALLR----- 107
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
LS +RKRL+ EL P++L
Sbjct: 108 -----------------------------------GLSVEQRKRLTIGVELAAKPSILFL 132
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
DEPT+GLDS +A ++R +++L + +LCTIHQPS+ + + FD+++LL
Sbjct: 133 DEPTSGLDSQAAYNIVRFLKKLADS-GQAILCTIHQPSASIFEKFDRLLLLK 183
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-23
Identities = 142/603 (23%), Positives = 256/603 (42%), Gaps = 108/603 (17%)
Query: 85 IDGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYFMA-----------LLKL 131
+ G+I NG + +F R ++ Q+D+ +TV E L F A L +L
Sbjct: 221 VSGEITYNGYRLN-EFVPRKTSAYISQNDVHVGVMTVKETLDFSARCQGVGTRYDLLSEL 279
Query: 132 DRR---------------VKAYQRIALINSLLIE-----LGLMNSQHTRIGSSSITQKVV 171
RR +KA + +SL+ + LGL + T +G I
Sbjct: 280 ARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRG--- 336
Query: 172 LSGGERKRLSFATELLTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+SGG++KR++ E++ P L DE +TGLDS + ++++ ++++ + TVL ++
Sbjct: 337 ISGGQKKRVT-TGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLL 395
Query: 231 QPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTN 290
QP+ E D+FD IILL++ + + G +D L F ES G+ CP ADFL
Sbjct: 396 QPAPETFDLFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFL--------- 446
Query: 291 DELSSRRRLKRICDE-------FSVCDFAKEVDLEINYQTHVGT---YDFLADFN-SRKI 339
E++S++ ++ + SV +FA+ HVG + F+ S+
Sbjct: 447 QEVTSKKDQEQYWADRNKPYRYISVSEFAERFK-----SFHVGMQLENELSVPFDKSQSH 501
Query: 340 KKPFWFT--------IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT 391
K F+ ++ + +L + R+ + + K Q + A + F + T
Sbjct: 502 KAALVFSKYSVPKMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRTEMHT 561
Query: 392 QR---GVQSVQGALFIMVTE--NTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSY 446
+ G + LF M+ N F+ + ++ + LP+F+++ + + F L
Sbjct: 562 RNEEDGALYIGALLFSMIINMFNGFAELALMIQR----LPVFYKQRDLLFHPPWTFTLPT 617
Query: 447 ILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATS-----CGIMFSL 501
L +P II++V++ VI Y+ G S F +L+ LI +A + ++
Sbjct: 618 FLLGIPISIIESVVWVVITYYSIGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTM 677
Query: 502 AFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQ---- 557
++ A+ L+ F + G +P ++ W ++S L Y AL + +
Sbjct: 678 IIANTGGALVLLLVF-----LLGGFILPKGEIPNWWEWAYWVSPLSYGFNALAVNEMFAP 732
Query: 558 -WQGVTNITCFDNPDLPCLEDGAQVINNMN-FSPDNLY----PNLIAMVVLYFAFHTLAF 611
W N DN G V+N + F+ N Y L+ +L+ TLA
Sbjct: 733 RWM---NKMASDN----STRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLAL 785
Query: 612 LFL 614
+L
Sbjct: 786 TYL 788
|
Length = 1470 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 8e-23
Identities = 48/174 (27%), Positives = 82/174 (47%), Gaps = 37/174 (21%)
Query: 85 IDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
++GDI NG P + K+ ++ + D+ P+LTV E L F K + V+
Sbjct: 63 VEGDIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCKGNEFVR----- 117
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+SGGERKR+S A L++ ++L D T G
Sbjct: 118 -----------------------------GISGGERKRVSIAEALVSRASVLCWDNSTRG 148
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LDS +A ++++ +R + K T +++Q S E+ D+FDK+++L + R + G
Sbjct: 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 94.9 bits (237), Expect = 3e-22
Identities = 54/175 (30%), Positives = 84/175 (48%), Gaps = 21/175 (12%)
Query: 87 GDIRVNGKPVEGKFRSAC----GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G +NG + R A G+ Q D LTV EHL F A LK + +
Sbjct: 57 GTAYINGYSI-RTDRKAARQSLGYCPQFDALFDELTVREHLRFYARLK---GLPKSEIKE 112
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ LL LGL + + R + LSGG +++LS A L+ P++LL DEPT+GL
Sbjct: 113 EVELLLRVLGLTDKANKRART--------LSGGMKRKLSLAIALIGGPSVLLLDEPTSGL 164
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIGS 256
D S + ++ E+ R +++ T H S + + D+I +++D + IGS
Sbjct: 165 DPASRRAIWDLILEVRKGR--SIILTTH--SMDEAEALCDRIAIMSDGKLRCIGS 215
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 94.2 bits (235), Expect = 5e-22
Identities = 51/174 (29%), Positives = 85/174 (48%), Gaps = 21/174 (12%)
Query: 87 GDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--LDRRVKAYQRI 141
G IR++G+ V K R G++ Q P+ TV E L ++A LK + VKA
Sbjct: 54 GTIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKAR--- 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
++ +L + L + +IGS LSGG R+R+ A L+ DP++L+ DEPT G
Sbjct: 111 --VDEVLELVNLGDRAKKKIGS--------LSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
LD + ++ EL R V+ + H ++ + +++ +L + F G
Sbjct: 161 LDPEERIRFRNLLSELGEDR--IVILSTHI-VEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 54/171 (31%), Positives = 89/171 (52%), Gaps = 22/171 (12%)
Query: 87 GDIRVNGKPVEG-------KFR-SACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ +NGK + K R GF++Q +L P LTV E++ L+ A
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLL-PDLTVLENVELPLLI---AGKSA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+R LL LGL + + ++ LSGG+++R++ A L+ +P ++L DE
Sbjct: 116 GRRKRAAEELLEVLGLEDRLLKK----KPSE---LSGGQQQRVAIARALINNPKIILADE 168
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
PT LDS +A +++ ++REL +R KT++ H P EL D++I L D
Sbjct: 169 PTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIELKD 217
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 94.1 bits (235), Expect = 7e-22
Identities = 52/174 (29%), Positives = 84/174 (48%), Gaps = 29/174 (16%)
Query: 87 GDIRVNGKPVEG-------KFRSA-CGFMYQHDLFSPSLTVYEH----LYFMALLKLDRR 134
G++RV+G + FR GF++Q P LT E+ L + K +RR
Sbjct: 59 GEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR 118
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A + LL +GL + + LSGG+++R++ A L DP ++L
Sbjct: 119 ERAEE-------LLERVGLGDRLNHYPSE--------LSGGQQQRVAIARALANDPKIIL 163
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
DEPT LDS + +++ ++REL + T++ H P EL + D+II L D
Sbjct: 164 ADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP--ELAEYADRIIELRD 215
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 90.2 bits (225), Expect = 1e-20
Identities = 46/174 (26%), Positives = 83/174 (47%), Gaps = 24/174 (13%)
Query: 85 IDGDIRVNGKPVE----GKFRSACGFMYQ---HDLFSPSLTVYEHLYF-MALLKLDRRVK 136
G++ V+GK + + R G ++Q F P TV E + F + L L
Sbjct: 54 TSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP--TVEEEVAFGLENLGLPE--- 108
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ + L +GL + + LSGG+++R++ A L DP +LL D
Sbjct: 109 -EEIEERVEEALELVGLEGLRDRSPFT--------LSGGQKQRVAIAGVLAMDPDILLLD 159
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
EPT GLD +L+ ++++L ++ K ++ T H L+++ D++I+L D +
Sbjct: 160 EPTAGLDPAGRRELLELLKKLKAEGKTIIIVT-HDL-DLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 86.4 bits (215), Expect = 5e-19
Identities = 50/186 (26%), Positives = 83/186 (44%), Gaps = 24/186 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHD-LFSPSLTVYEHLYFMAL--LKLDRRVK 136
G++ ++G+ + G + R G ++Q LF SLTV+E++ F +L
Sbjct: 55 GEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFD-SLTVFENVAFPLREHTRLSEEE- 112
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ I L L +GL ++ LSGG +KR++ A L DP LLL D
Sbjct: 113 -IREIVL--EKLEAVGLRGAEDLYPAE--------LSGGMKKRVALARALALDPELLLYD 161
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
EPT GLD ++ + ++R L + T + H + D+I +L D + G+
Sbjct: 162 EPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHD-LDTAFAIADRIAVLYDGKIVAEGT 220
Query: 257 KDAALA 262
+ A
Sbjct: 221 PEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 84.4 bits (210), Expect = 5e-19
Identities = 43/167 (25%), Positives = 69/167 (41%), Gaps = 52/167 (31%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I+V GK + + + G++ + +LTV E+L
Sbjct: 55 GEIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENLTVRENLK------------------- 95
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGG ++RL+ A LL DP LL+ DEPT+GLD
Sbjct: 96 ----------------------------LSGGMKQRLALAQALLHDPELLILDEPTSGLD 127
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
S + ++REL + KT+L + H E + D++ +L + R
Sbjct: 128 PESRREFWELLREL-KKEGKTILLSSHIL-EEAERLCDRVAILNNGR 172
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 7e-19
Identities = 33/79 (41%), Positives = 51/79 (64%), Gaps = 2/79 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A LL +P LLL DEPT+GLD S +L+ ++REL ++ +TV+ H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLREL-AEEGRTVIIVTHD 139
Query: 232 PSSELIDMFDKIILLADSR 250
P D++I+L D +
Sbjct: 140 P-ELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 8e-19
Identities = 49/168 (29%), Positives = 82/168 (48%), Gaps = 22/168 (13%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPS--LTVYEHLYFMALLKLDRRVKAYQRI--- 141
G IRV GKP+E K R G++ Q ++V + + L+ L ++R+
Sbjct: 54 GSIRVFGKPLE-KERKRIGYVPQRRSIDRDFPISVRD----VVLMGLYGHKGLFRRLSKA 108
Query: 142 --ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
A ++ L +GL +IG LSGG+++R+ A L+ DP LLL DEP
Sbjct: 109 DKAKVDEALERVGLSELADRQIGE--------LSGGQQQRVLLARALVQDPDLLLLDEPF 160
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
G+D + + ++REL + T+L H +++ FD+++LL
Sbjct: 161 AGVDPKTQEDIYELLREL-RREGMTILVVTHDLGL-VLEYFDRVLLLN 206
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 9e-19
Identities = 64/209 (30%), Positives = 99/209 (47%), Gaps = 36/209 (17%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHD-LFSPSLTVY 120
S L+RL L + D G+I ++G+ + + R G ++Q LFS SLTV+
Sbjct: 48 STLLRLILGLLRPD---KGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFS-SLTVF 103
Query: 121 EHLYFM--ALLKLDRRVKAYQRIALINSLLIELG-----LMNSQHTRIGSSSITQKVVLS 173
E++ F KL + + + L+ L+ L L S+ LS
Sbjct: 104 ENVAFPLREHTKLPESL--IRELVLMKLELVGLRGAAADLYPSE--------------LS 147
Query: 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233
GG RKR++ A + DP LL DEPT+GLD SA + ++REL TV+ H
Sbjct: 148 GGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLD 207
Query: 234 SELIDMFDKIILLADSRTAFIGSKDAALA 262
S L+ + D++ +LAD + G+ + LA
Sbjct: 208 S-LLTIADRVAVLADGKVIAEGTPEELLA 235
|
Length = 263 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 50/186 (26%), Positives = 87/186 (46%), Gaps = 25/186 (13%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC-GFMYQHDLFSPS--LTVYEHLYF 125
S L++ L + G+I++ GKPV + + G++ Q S +TV +
Sbjct: 44 STLLKAILGLLKPSS---GEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKD---V 97
Query: 126 MAL-----LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
+ L RR+ + ++ L +G+ + + +IG LSGG+++R+
Sbjct: 98 VLLGRYGKKGWFRRLNK-KDKEKVDEALERVGMEDLRDRQIGE--------LSGGQKQRV 148
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
A L +P LLL DEP TG+D ++ +++EL Q KTVL H ++ F
Sbjct: 149 LLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKEL-RQEGKTVLMVTHDL-GLVMAYF 206
Query: 241 DKIILL 246
D++I L
Sbjct: 207 DRVICL 212
|
Length = 254 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 67/210 (31%), Positives = 94/210 (44%), Gaps = 33/210 (15%)
Query: 68 FSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL- 123
FS L RL+++Q +G I V G + R+A G ++Q L+V ++L
Sbjct: 44 FSLLTRLYVAQ-------EGQISVAGHDLRRAPRAALARLGVVFQQPTLDLDLSVRQNLR 96
Query: 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183
Y AL L R A RIA LL LGL ++ L+GG R+R+ A
Sbjct: 97 YHAALHGLSRAE-ARARIA---ELLARLGLAERADDKVRE--------LNGGHRRRVEIA 144
Query: 184 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH-----QPSSELID 238
LL PALLL DEPT GLD S + + +R L + +VL H + L+
Sbjct: 145 RALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEADDRLV- 203
Query: 239 MFDKIILLADSRTAFI----GSKDAALAFL 264
+ + +LAD A + G D AFL
Sbjct: 204 VLHRGRVLADGAAAELRGATGGADLEAAFL 233
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 80.3 bits (199), Expect = 6e-17
Identities = 46/184 (25%), Positives = 83/184 (45%), Gaps = 20/184 (10%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH-----LYFMALLK-LDRRV-K 136
I DI + R G ++Q L+V E+ L + + L K
Sbjct: 60 IDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPK 119
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
++ AL + L +GL++ + R LSGG+++R++ A L+ P L+L D
Sbjct: 120 EEKQRAL--AALERVGLLDKAYQRADQ--------LSGGQQQRVAIARALMQQPKLILAD 169
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLADSRTAFIG 255
EP LD S+ +++ +++ + + TV+ ++HQ +L + D+I+ L D R F G
Sbjct: 170 EPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV--DLAREYADRIVGLKDGRIVFDG 227
Query: 256 SKDA 259
Sbjct: 228 PPAE 231
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 7e-17
Identities = 43/188 (22%), Positives = 78/188 (41%), Gaps = 20/188 (10%)
Query: 85 IDGDIRVNGKPVEGK-----FRSACGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G++ V+G + R G ++Q+ D TV + + F L L R
Sbjct: 57 TSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEI- 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ L +GL + LSGG+++R++ A L P +LL DE
Sbjct: 116 ---EERVAEALELVGLEELLDRPPFN--------LSGGQKQRVAIAGVLAMGPEILLLDE 164
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
PT GLD +L+ ++++L + KT++ H +++ D++++L D + G
Sbjct: 165 PTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDGKILADGDP 223
Query: 258 DAALAFLE 265
E
Sbjct: 224 AEIFNDAE 231
|
Length = 235 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-16
Identities = 43/151 (28%), Positives = 70/151 (46%), Gaps = 14/151 (9%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
G ++Q P L V E+L F LK R + + + L L+ H + +
Sbjct: 78 GLVFQQYALFPHLNVRENLAFG--LKRKRNREDRISVDEL------LDLLGLDH--LLNR 127
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
Q LSGGE++R++ A L P LLL DEP + LD +L+ ++++
Sbjct: 128 YPAQ---LSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIP 184
Query: 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
V+ H SE + D+I+++ D R +IG
Sbjct: 185 VIFVTHDL-SEAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-15
Identities = 40/170 (23%), Positives = 68/170 (40%), Gaps = 52/170 (30%)
Query: 87 GDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I ++G+ + R G ++Q P LTV E+
Sbjct: 55 GSILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLEN------------------ 96
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
I LGL SGG+++R++ A L DP +LL DEPT+
Sbjct: 97 --------IALGL-------------------SGGQQQRVALARALAMDPDVLLLDEPTS 129
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
LD + ++ +++ L +Q TV+ H E + D++++L D +
Sbjct: 130 ALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-15
Identities = 37/137 (27%), Positives = 58/137 (42%), Gaps = 23/137 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHL 123
S L++L + G I ++G+ G R G ++Q P LTV E+L
Sbjct: 1 STLLKLITGLLQPTS---GTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENL 57
Query: 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183
+F ++ + A L +GL + + LSGG+++R++ A
Sbjct: 58 FF--------GLRDKEADARAEEALERVGLPDFLDREPVGT-------LSGGQKQRVAIA 102
Query: 184 TELLTDPALLLCDEPTT 200
LL P LLL DEPT
Sbjct: 103 RALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 74.0 bits (183), Expect = 5e-15
Identities = 46/160 (28%), Positives = 80/160 (50%), Gaps = 13/160 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G++ V+G+PV G G+++Q D P LTV +++ L+L + V +
Sbjct: 59 GEVLVDGEPVTGP-GPDRGYVFQQDALLPWLTVLDNVAL--GLEL-QGVPKAEARERAEE 114
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL +GL ++ LSGG R+R++ A L DP +LL DEP + LD+ +
Sbjct: 115 LLELVGLSGFENAYPHQ--------LSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+L + ++ + KTVL H E + + D++++L
Sbjct: 167 REQLQEELLDIWRETGKTVLLVTHD-IDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 73.4 bits (181), Expect = 6e-15
Identities = 44/165 (26%), Positives = 77/165 (46%), Gaps = 16/165 (9%)
Query: 84 IIDGD--IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
++G +N K R G+++Q+ + TV E+L LK + K ++
Sbjct: 56 YLNGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENL--DLGLKYKKLSKK-EKR 112
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
L ++GL +I LSGGE++R++ A +L P L+L DEPT
Sbjct: 113 EKKKEALEKVGLNLKLKQKIYE--------LSGGEQQRVALARAILKPPPLILADEPTGS 164
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
LD + +++ ++ EL + KT++ H P E+ D++I L
Sbjct: 165 LDPKNRDEVLDLLLELNDE-GKTIIIVTHDP--EVAKQADRVIEL 206
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 8e-15
Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 16/167 (9%)
Query: 87 GDIRVNGKPVEG--KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++G+ V G R G ++Q LF P LTV E++ F LKL R V + A
Sbjct: 55 GEILIDGRDVTGVPPERRNIGMVFQDYALF-PHLTVAENIAFG--LKL-RGVPKAEIRAR 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ LL +GL + LSGG+++R++ A L +P+LLL DEP + LD
Sbjct: 111 VRELLELVGLEGLLNRYPHE--------LSGGQQQRVALARALAREPSLLLLDEPLSALD 162
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+ +L ++EL + T + H E + + D+I ++ + R
Sbjct: 163 AKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGR 208
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 74.5 bits (183), Expect = 2e-14
Identities = 56/170 (32%), Positives = 78/170 (45%), Gaps = 28/170 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL-- 123
S + R+ L D G I V G PV + R A G + Q D TV E+L
Sbjct: 81 STIARMILGMTSPD---AGKITVLGVPVPARARLARARIGVVPQFDNLDLEFTVRENLLV 137
Query: 124 ---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
YF + + A+I SLL + R+ S + + LSGG ++RL
Sbjct: 138 FGRYF--------GMSTREIEAVIPSLL--------EFARLESKADARVSDLSGGMKRRL 181
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+L T H
Sbjct: 182 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTH 230
|
Length = 340 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 72.3 bits (178), Expect = 2e-14
Identities = 45/173 (26%), Positives = 88/173 (50%), Gaps = 21/173 (12%)
Query: 86 DGDIRVNGKPVEG-------KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
+G ++V G+ + G + R G+++Q H+L LT +++ MAL +L +
Sbjct: 59 EGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNLL-GFLTARQNVQ-MAL-ELQPNLSY 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ ++L +GL + + LSGG+++R++ A L+ P L+L DE
Sbjct: 116 QEARERARAMLEAVGLGDHLDYYPHN--------LSGGQKQRVAIARALVHRPKLVLADE 167
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LDS S ++ +M++L ++ T+L H ++D+ D+I+ + D +
Sbjct: 168 PTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN--RILDVADRIVHMEDGK 218
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 2e-14
Identities = 36/152 (23%), Positives = 71/152 (46%), Gaps = 17/152 (11%)
Query: 84 IIDGDIRVNGKPVEGK-------FRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLDRR 134
G I +GK + R ++Q + S P +T+ E + +
Sbjct: 57 PTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS 116
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
K ++ A++ LL+ +GL + + + LSGG+R+R++ A L +P LL+
Sbjct: 117 KKEARKEAVLL-LLVGVGL----PEEVLNRYPHE---LSGGQRQRVAIARALALNPKLLI 168
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
DEPT+ LD ++++ ++++L + T+L
Sbjct: 169 ADEPTSALDVSVQAQILDLLKKLQEELGLTLL 200
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 70.9 bits (175), Expect = 3e-14
Identities = 42/128 (32%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L L + A ++IA + L LGL + LSGGER+R+ A L
Sbjct: 63 LASLSPKELA-RKIAYVPQALELLGLAHLADRPFNE--------LSGGERQRVLLARALA 113
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+P +LL DEPT+ LD +L+ ++R L +R KTV+ +H + D++ILL
Sbjct: 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAAR-YADRVILLK 172
Query: 248 DSRTAFIG 255
D R G
Sbjct: 173 DGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 72.2 bits (178), Expect = 3e-14
Identities = 47/162 (29%), Positives = 79/162 (48%), Gaps = 13/162 (8%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G++ ++G+PV G G+++Q D P LTV +++ L+L R +
Sbjct: 58 GEVLLDGRPVTGPGP-DIGYVFQEDALLPWLTVLDNVAL--GLEL-RGKSKAEARERAKE 113
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL +GL + LSGG R+R++ A L T P LLL DEP LD+ +
Sbjct: 114 LLELVGLAGFEDKYPH--------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L + L + +KTVL H E + + D++++L++
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSN 206
|
Length = 248 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 52/173 (30%), Positives = 84/173 (48%), Gaps = 23/173 (13%)
Query: 87 GDIRVNGKPVE-------GKFRS-ACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ NG+ + K R+ GF+YQ H L P T E++ M LL + VK
Sbjct: 60 GEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLL-PDFTALENV-AMPLLIGKKSVKE 117
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A +L ++GL + + R LSGGER+R++ A L+ P+L+L DE
Sbjct: 118 AKERAY--EMLEKVGLEHRINHRPSE--------LSGGERQRVAIARALVNQPSLVLADE 167
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LD+ +A + +M EL + + L H EL D+++ + D +
Sbjct: 168 PTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL--ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 71.9 bits (176), Expect = 1e-13
Identities = 68/221 (30%), Positives = 99/221 (44%), Gaps = 37/221 (16%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFR---SACGFMYQHDLFSPSLTVYEHL-- 123
S + R+ L + D G I V G+PV + R A G + Q D P TV E+L
Sbjct: 44 STIARMLLGMISPD---RGKITVLGEPVPSRARLARVAIGVVPQFDNLDPEFTVRENLLV 100
Query: 124 ---YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
YF + + A+I SLL + R+ S + + +LSGG ++RL
Sbjct: 101 FGRYF--------GMSTREIEAVIPSLL--------EFARLESKADVRVALLSGGMKRRL 144
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240
+ A L+ DP LL+ DEPTTGLD + + +R L + R KT+L T H E +
Sbjct: 145 TLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHF-MEEAERLC 202
Query: 241 DKIILLADSRTAFIGSKDAALAFLESQGYPCP----YGYNP 277
D++ +L R G A L + C YG +P
Sbjct: 203 DRLCVLESGRKIAEGRPHA----LIDEQIGCNVIEIYGGDP 239
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-13
Identities = 54/209 (25%), Positives = 94/209 (44%), Gaps = 42/209 (20%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYE 121
S L+R L+ ++D G+I NG + K R G ++Q P L+V E
Sbjct: 44 STLLRS-LNGLVD--PTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLE 100
Query: 122 HLYFMALLKLDRR----------VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171
++ L +L K + AL L +G+++ + R +
Sbjct: 101 NV---LLGRLGYTSTWRSLFGLFSKEDKAQAL--DALERVGILDKAYQRAST-------- 147
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P ++L DEP LD SA K++ +++++ + TV+ +HQ
Sbjct: 148 LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQ 207
Query: 232 PSSELIDM----FDKIILLADSRTAFIGS 256
+D+ D+II L R F G
Sbjct: 208 -----VDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-13
Identities = 51/173 (29%), Positives = 76/173 (43%), Gaps = 20/173 (11%)
Query: 85 IDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIAL 143
+DG V +P E + R GF+ LT E+L YF L L + A
Sbjct: 64 VDG-FDVVKEPAEARRR--LGFVSDSTGLYDRLTARENLEYFAGLYGLKGD----ELTAR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L LG+ R+G S G R++++ A L+ DP +LL DEPTTGLD
Sbjct: 117 LEELADRLGMEELLDRRVGG--------FSTGMRQKVAIARALVHDPPVLLLDEPTTGLD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIG 255
+ L +R+L + K + T I Q L D++++L R + G
Sbjct: 169 VMATRALREFIRQLRALGKCILFSTHIMQEVERLC---DRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 69.9 bits (172), Expect = 2e-13
Identities = 42/154 (27%), Positives = 75/154 (48%), Gaps = 22/154 (14%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G + V+G + K R G ++QH +L S S TV+E++ AL L++ KA
Sbjct: 60 GSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLS-SRTVFENV---ALPLEIAGVPKA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + LL +GL + LSGG+++R+ A L +P +LLCDE
Sbjct: 116 -EIEERVLELLELVGLEDKADAYPAQ--------LSGGQKQRVGIARALANNPKVLLCDE 166
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
T+ LD + ++ ++R++ + T++ H+
Sbjct: 167 ATSALDPETTQSILALLRDINRELGLTIVLITHE 200
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 68.8 bits (169), Expect = 2e-13
Identities = 51/168 (30%), Positives = 84/168 (50%), Gaps = 25/168 (14%)
Query: 86 DGDIRVNGKPVEGKFR-SACGFMYQ---HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G I +NGKP++ K R + G++ Q + LF+ S V E L L L ++
Sbjct: 54 SGSILLNGKPIKAKERRKSIGYVMQDVDYQLFTDS--VREELL----LGLKELDAGNEQA 107
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ L +L + +H LSGG+++RL+ A LL+ LL+ DEPT+G
Sbjct: 108 ETVLKDL-DLYALKERHPLS----------LSGGQKQRLAIAAALLSGKDLLIFDEPTSG 156
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLAD 248
LD + ++ ++REL +Q K V+ H E + D+++LLA+
Sbjct: 157 LDYKNMERVGELIRELAAQ-GKAVIVITHDY--EFLAKVCDRVLLLAN 201
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.6 bits (171), Expect = 3e-13
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 30/203 (14%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYE 121
S L+R ++++++ G I + G + K R G ++QH LTV E
Sbjct: 42 STLLRC-INRLVE--PSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLE 98
Query: 122 H-----LYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174
+ L + + L R + + AL S L +GL + + R LSG
Sbjct: 99 NVLHGRLGYKPTWRSLLGRFSEEDKERAL--SALERVGLADKAYQRADQ--------LSG 148
Query: 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
G+++R++ A L P L+L DEP LD ++ +++ ++ + + TV+ +HQ
Sbjct: 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQ--V 206
Query: 235 ELIDMF-DKIILLADSRTAFIGS 256
+L + D+I+ L F G+
Sbjct: 207 DLAKKYADRIVGLKAGEIVFDGA 229
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.1 bits (169), Expect = 3e-13
Identities = 50/174 (28%), Positives = 86/174 (49%), Gaps = 14/174 (8%)
Query: 87 GDIRVNGKPV--EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
G IR+NG+ GF++QH LTV +++ F L++ + KA + A +
Sbjct: 55 GRIRLNGQDATRVHARDRKIGFVFQHYALFKHLTVRDNIAFG--LEIRKHPKAKIK-ARV 111
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
LL + L +G Q LSGG+R+R++ A L +P +LL DEP LD+
Sbjct: 112 EELLELVQL-----EGLGDRYPNQ---LSGGQRQRVALARALAVEPQVLLLDEPFGALDA 163
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+L +R+L + T + H E +++ D+I+++++ + IGS D
Sbjct: 164 KVRKELRSWLRKLHDEVHVTTVFVTHD-QEEAMEVADRIVVMSNGKIEQIGSPD 216
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 69.5 bits (171), Expect = 4e-13
Identities = 45/186 (24%), Positives = 75/186 (40%), Gaps = 32/186 (17%)
Query: 85 IDGDIRVNGKPVEGK----FRSACGFMYQHDLFSPSLTVYE---------HLYFMALLKL 131
G++ ++GK + ++ Q LTVYE F K
Sbjct: 55 KSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKE 114
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
D + + L LGL + + LSGGER+R+ A L +
Sbjct: 115 DEEI--------VEEALELLGLEHLADRPVDE--------LSGGERQRVLIARALAQETP 158
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSR 250
+LL DEPT+ LD +++ ++R+L ++ TV+ +H L + D +ILL D +
Sbjct: 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL--NLAARYADHLILLKDGK 216
Query: 251 TAFIGS 256
G+
Sbjct: 217 IVAQGT 222
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 6e-13
Identities = 54/153 (35%), Positives = 73/153 (47%), Gaps = 27/153 (17%)
Query: 87 GDIRVNGKPVEGKFRSA---CGFMYQHDLFSPSLTVYEHL-----YFMALLKLDRRVKAY 138
G I + G+PV + R A G + Q D P TV E+L YF + A
Sbjct: 62 GSISLCGEPVPSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYF--------GLSAA 113
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
AL+ LL L N ++G LSGG ++RL+ A L+ DP +L+ DEP
Sbjct: 114 AARALVPPLLEFAKLENKADAKVGE--------LSGGMKRRLTLARALVNDPDVLVLDEP 165
Query: 199 TTGLDSFSASKLI-RMMRELTSQRKKTVLCTIH 230
TTGLD A L+ +R L + R KT+L T H
Sbjct: 166 TTGLDP-QARHLMWERLRSLLA-RGKTILLTTH 196
|
Length = 306 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 67.9 bits (167), Expect = 6e-13
Identities = 48/178 (26%), Positives = 87/178 (48%), Gaps = 34/178 (19%)
Query: 87 GDIRVNGKPVEG------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA-Y 138
G I ++G + + R G ++Q +LF P LTV E++ +A +K+ KA
Sbjct: 55 GTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF-PHLTVLENI-TLAPIKVKGMSKAEA 112
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ AL LL ++GL + LSGG+++R++ A L +P ++L DEP
Sbjct: 113 EERAL--ELLEKVGLADKADAYPAQ--------LSGGQQQRVAIARALAMNPKVMLFDEP 162
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-F-----DKIILLADSR 250
T+ LD +++ +M++L ++ T++ H +M F D++I + D R
Sbjct: 163 TSALDPELVGEVLDVMKDL-AEEGMTMVVVTH-------EMGFAREVADRVIFMDDGR 212
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 7e-13
Identities = 38/178 (21%), Positives = 81/178 (45%), Gaps = 29/178 (16%)
Query: 84 IIDGDIRVNGKPV----EGKFRSACG----FMYQH--DLFSPSLTVYEHLYFMALLKLDR 133
I G++ ++G+ + E + R G ++Q +P +T+ + + L+L
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQI--REALRLHG 122
Query: 134 RVKAYQRIALINSLLIELGL----MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
+ + LL ++GL ++ LSGG R+R+ A L
Sbjct: 123 KGSRAEARKRAVELLEQVGLPDPERRDRYPH----------QLSGGMRQRVMIAMALALK 172
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILL 246
P LL+ DEPTT LD + ++++ ++++L + VL H ++ ++ D+++++
Sbjct: 173 PKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL--GVVAELADRVVVM 228
|
Length = 539 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 68.0 bits (167), Expect = 9e-13
Identities = 46/179 (25%), Positives = 85/179 (47%), Gaps = 22/179 (12%)
Query: 87 GDIRVNG-----KPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLY-FMALLKLDRRVKAYQ 139
G I ++G P+ + R G++ Q +F LTV E++ + + L ++ +
Sbjct: 55 GKILLDGQDITKLPMHKRARLGIGYLPQEASIFR-KLTVEENILAVLEIRGLSKK----E 109
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R + LL E + + + ++ SS LSGGER+R+ A L T+P LL DEP
Sbjct: 110 REEKLEELLEEFHITHLRKSK-ASS-------LSGGERRRVEIARALATNPKFLLLDEPF 161
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
G+D + + ++++ L R VL T H E + + D+ ++ + + G+ +
Sbjct: 162 AGVDPIAVQDIQKIIKIL-KDRGIGVLITDHN-VRETLSITDRAYIIYEGKVLAEGTPE 218
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 68.2 bits (167), Expect = 9e-13
Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 13/162 (8%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G I++NG+ +EG + G ++Q++ P L V +++ F L+L R ++ QR + +
Sbjct: 59 RGSIQLNGRRIEGP-GAERGVVFQNEALLPWLNVIDNVAFG--LQL-RGIEKAQRREIAH 114
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L +GL ++H I LSGG R+R+ A L +P LLL DEP LD+
Sbjct: 115 QMLALVGLEGAEHKYI--------WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDAL 166
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+ ++ ++ +L + K VL H L + ++++L+
Sbjct: 167 TREQMQELLLDLWQETGKQVLLITHDIEEALF-LATRLVVLS 207
|
Length = 259 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-12
Identities = 42/147 (28%), Positives = 64/147 (43%), Gaps = 14/147 (9%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G V G V + R G ++Q LT +E+LY A L + +RI
Sbjct: 55 GRATVAGHDVVREPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERID- 113
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LL +GL+ + + + SGG R+RL A L+ P +L DEPT GLD
Sbjct: 114 --ELLDFVGLLEAADRLVKT--------YSGGMRRRLEIARSLVHRPEVLFLDEPTIGLD 163
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIH 230
+ + + + +L + T+L T H
Sbjct: 164 PQTRAHVWEYIEKLKEEFGMTILLTTH 190
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 1e-12
Identities = 31/80 (38%), Positives = 50/80 (62%), Gaps = 4/80 (5%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+LSGG+R+R++ A LL DP +L+ DE T+ LD + + ++ +R L + KTV+ H
Sbjct: 96 ILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALA--KGKTVIVIAH 153
Query: 231 QPSSELIDMFDKIILLADSR 250
+ S+ I D+II+L D R
Sbjct: 154 RLST--IRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (162), Expect = 3e-12
Identities = 44/177 (24%), Positives = 84/177 (47%), Gaps = 22/177 (12%)
Query: 87 GDIRVNGK-----PVEGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I +NGK P E + ++ Q + LF P +TVY+++ + + + + ++
Sbjct: 54 GKILLNGKDITNLPPE---KRDISYVPQNYALF-PHMTVYKNIAYGLKKRKVDKKEIERK 109
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ I +L L+N + LSGGE++R++ A L+ +P +LL DEP +
Sbjct: 110 VLEIAEMLGIDHLLNRKPET-----------LSGGEQQRVAIARALVVNPKILLLDEPFS 158
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
LD + KL ++++ + TVL H E + DK+ ++ + + +G
Sbjct: 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHD-FEEAWALADKVAIMLNGKLIQVGKP 214
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 8e-12
Identities = 44/161 (27%), Positives = 61/161 (37%), Gaps = 36/161 (22%)
Query: 87 GDIRVNGKPVEGK----------FRSACGFMYQHDLFSPSLTVYE--------HLYFMAL 128
G + G+ + G R+ +Q P LTV E L L
Sbjct: 59 GTVIFRGRDITGLPPHRIARLGIART-----FQITRLFPGLTVLENVAVGAHARLGLSGL 113
Query: 129 LKLDRRVKAYQRI---ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
L R K + A LL +GL G+ LS G+++RL A
Sbjct: 114 LGRPRARKEEREARERAR--ELLEFVGLGELADRPAGN--------LSYGQQRRLEIARA 163
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
L T P LLL DEP GL+ +L ++REL + T+L
Sbjct: 164 LATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTIL 204
|
Length = 250 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 9e-12
Identities = 47/147 (31%), Positives = 72/147 (48%), Gaps = 19/147 (12%)
Query: 87 GDIRVNGKPVEGK-----FRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLDRRVKAYQ 139
G I ++GKP+ K F ++Q S P TV L L+ K+ Q
Sbjct: 62 GSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL--SEPLRPHGLSKSQQ 119
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
RIA LL ++GL S R + LSGG+R+R++ A L+ +P LL+ DEPT
Sbjct: 120 RIA---ELLDQVGLPPSFLDR----RPHE---LSGGQRQRIAIARALIPEPKLLILDEPT 169
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVL 226
+ LD ++++ ++ EL +R T L
Sbjct: 170 SALDVSVQAQILNLLLELKKERGLTYL 196
|
Length = 252 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-11
Identities = 30/84 (35%), Positives = 48/84 (57%), Gaps = 4/84 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
SGGER+RL+ A LL D ++L DEPT GLD + +L+ ++ E+ + KT++ H
Sbjct: 99 FSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHH 156
Query: 232 PSSELIDMFDKIILLADSRTAFIG 255
+ I+ DKI+ L + + G
Sbjct: 157 LTG--IEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 1e-11
Identities = 47/174 (27%), Positives = 72/174 (41%), Gaps = 19/174 (10%)
Query: 87 GDIRVNGKP---VEGKF--RSACGF--MYQHDLFSPSLTVYEHLY--FMALLKLDRRVKA 137
GD+ + G+ E F R G H+ F TV + + F A + + +
Sbjct: 86 GDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLT 145
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ +A LL LG + GS LS GE++R+ A L+ DP LL+ DE
Sbjct: 146 AEDLAAAQWLLELLGAKHLADRPFGS--------LSQGEQRRVLIARALVKDPELLILDE 197
Query: 198 PTTGLDSFSASKLIRMMREL-TSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
P GLD + +L+ + EL S +L H E+ F +LL +
Sbjct: 198 PAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRLLLKEGE 250
|
Length = 257 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 63.8 bits (156), Expect = 2e-11
Identities = 48/170 (28%), Positives = 78/170 (45%), Gaps = 25/170 (14%)
Query: 87 GDIRVNGKPV--EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
G+I +GK + G + + F P+LT E+L +A L R+ I
Sbjct: 55 GEITFDGKSYQKNIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRK-------KRI 107
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
+ +L +GL +S ++ S+ G ++RL A LL +P LL+ DEPT GLD
Sbjct: 108 DEVLDVVGLKDSAKKKVKGFSL--------GMKQRLGIALALLGNPDLLILDEPTNGLDP 159
Query: 205 FSASKLIRMMRELT---SQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
I+ +REL + TVL + H SE+ + D+I ++ +
Sbjct: 160 DG----IKELRELILSLRDQGITVLISSHL-LSEIQKVADRIGIINKGKL 204
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-11
Identities = 53/188 (28%), Positives = 96/188 (51%), Gaps = 18/188 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128
+ IR+ L ++ D G++ +GKP++ R+ G++ + P + V + L ++A
Sbjct: 40 TTTIRMILGIILPD---SGEVLFDGKPLDIAARNRIGYLPEERGLYPKMKVIDQLVYLAQ 96
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
LK ++ +A +RI + L L L + R+ LS G ++++ F ++
Sbjct: 97 LKGLKKEEARRRI---DEWLERLELSEYANKRVEE--------LSKGNQQKVQFIAAVIH 145
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLA 247
DP LL+ DEP +GLD + L ++REL KTV+ + HQ EL+ ++ D+++LL
Sbjct: 146 DPELLILDEPFSGLDPVNVELLKDVIRELARA-GKTVILSTHQ--MELVEELCDRVLLLN 202
Query: 248 DSRTAFIG 255
R G
Sbjct: 203 KGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 3e-11
Identities = 44/155 (28%), Positives = 77/155 (49%), Gaps = 10/155 (6%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
GF++QH P +TV +++ F ++ +R +A R A + LL L+ +
Sbjct: 80 GFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIR-ARVEELLR---LVQLEGL--ADR 133
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
Q LSGG+R+R++ A L +P +LL DEP LD+ +L R +R+L + T
Sbjct: 134 YPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVT 190
Query: 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259
+ H E +++ D++++L R +G D
Sbjct: 191 TVFVTHDQ-EEALELADRVVVLNQGRIEQVGPPDE 224
|
Length = 345 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-11
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAY 138
G IRVNG+ V R G ++Q P VYE++ F + + + R
Sbjct: 56 GTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPRE-IR 114
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+R+ + L +GL + LSGGE++R++ A ++ P +L+ DEP
Sbjct: 115 KRVP---AALELVGLSHKHRALPAE--------LSGGEQQRVAIARAIVNSPTILIADEP 163
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238
T LD + +++ +++++ ++ TV+ H + EL+D
Sbjct: 164 TGNLDPDTTWEIMNLLKKI-NKAGTTVVVATH--AKELVD 200
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 65.4 bits (160), Expect = 4e-11
Identities = 51/182 (28%), Positives = 80/182 (43%), Gaps = 18/182 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPV----EGKFRSACGFMYQHDLFSPSLTVYEHLY 124
S L+ L L V +G I VNG P+ +R ++ QH T+ E++
Sbjct: 362 STLLNLLLGFVDPT---EGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG-TIAENIR 417
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
D ++ A ++ + L T IG LSGG+ +RL+ A
Sbjct: 418 LARPDASDAEIREALERAGLDEFVAALPQG--LDTPIGEGG----AGLSGGQAQRLALAR 471
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L D LLL DEPT LD+ + ++++ +R L R TVL H+ L + D+I+
Sbjct: 472 AFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGR--TVLLVTHRL--ALAALADRIV 527
Query: 245 LL 246
+L
Sbjct: 528 VL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 4e-11
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 21/172 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G++R+ G+P+ R+ GF++Q P+LT E++ L+ + +
Sbjct: 65 GEVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSR 124
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+LL +GL R+ LSGGE++R++ A P +L DEP
Sbjct: 125 AGAK---ALLEAVGLGK----RLTHYPAQ----LSGGEQQRVALARAFAGRPDVLFADEP 173
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
T LD + K+ ++ L +R T++ H P L D+ + L R
Sbjct: 174 TGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQ--LAARCDRQLRLRSGR 223
|
Length = 228 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 48/179 (26%), Positives = 79/179 (44%), Gaps = 36/179 (20%)
Query: 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-------KLD 132
G +R+ G+ V R G ++Q P TVYE++ L ++
Sbjct: 57 GQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVAL-PLEVRGKKEREIQ 115
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
RRV A L ++GL + LSGGE++R++ A ++ P L
Sbjct: 116 RRVGA---------ALRQVGLEHKADAFPEQ--------LSGGEQQRVAIARAIVNSPPL 158
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK-IILLADSR 250
LL DEPT LD + +++ +++ L ++R TV+ H L+D +I+L D R
Sbjct: 159 LLADEPTGNLDPDLSERILDLLKRL-NKRGTTVIVATHDL--SLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 62.8 bits (154), Expect = 4e-11
Identities = 45/161 (27%), Positives = 64/161 (39%), Gaps = 39/161 (24%)
Query: 87 GDIRVNGKPVEGK----------FRSACGFMYQHD-LFSPSLTVYE----------HLYF 125
G + +G+ + G R+ +Q LF P LTV E
Sbjct: 55 GSVLFDGEDITGLPPHEIARLGIGRT-----FQIPRLF-PELTVLENVMVAAQARTGSGL 108
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+ +A +R LL +GL + G LS G+++RL A
Sbjct: 109 LLARARREEREARERAE---ELLERVGLADLADRPAGE--------LSYGQQRRLEIARA 157
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
L TDP LLL DEP GL+ +L ++REL +R TVL
Sbjct: 158 LATDPKLLLLDEPAAGLNPEETEELAELIREL-RERGITVL 197
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 6e-11
Identities = 47/181 (25%), Positives = 87/181 (48%), Gaps = 17/181 (9%)
Query: 87 GDIRVNGKPVEGKF----RSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G+I ++G + R G + Q LFS T+ E++ D ++ ++
Sbjct: 384 GEILIDGIDIRDISLDSLRKRIGIVSQDPLLFS--GTIRENIALGRPDATDEEIEEALKL 441
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A + + L + T +G + LSGG+R+RL+ A LL +P +L+ DE T+
Sbjct: 442 ANAHEFIANLP--DGYDTIVGERGVN----LSGGQRQRLAIARALLRNPPILILDEATSA 495
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LD+ + + + +++L + +T L H+ S+ I D+II+L + R G+ + L
Sbjct: 496 LDTETEALIQDALKKLL--KGRTTLIIAHRLST--IKNADRIIVLDNGRIVERGTHEELL 551
Query: 262 A 262
A
Sbjct: 552 A 552
|
Length = 567 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 6e-11
Identities = 48/177 (27%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRI 141
I+ D + P+ + R G++ Q +F LTV +++ MA+L++ ++ +K +R
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFR-KLTVEDNI--MAVLEIREKDLKKAERK 117
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+++LL E + + + ++ S LSGGER+R+ A L +P +L DEP G
Sbjct: 118 EELDALLEEFHITHLRDSKAYS--------LSGGERRRVEIARALAANPKFILLDEPFAG 169
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+D + + R+++ L R VL T H E +D+ D+ +++D + GS +
Sbjct: 170 VDPIAVIDIQRIIKHLKD-RGIGVLITDHN-VRETLDICDRAYIISDGKVLAEGSPE 224
|
Length = 243 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 7e-11
Identities = 44/168 (26%), Positives = 70/168 (41%), Gaps = 20/168 (11%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G + G+ V +R + Q LF TV ++L F ++ R R
Sbjct: 57 SGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGD--TVEDNLIFPWQIRNRR----PDR 110
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
A ++ LL L I + +IT+ LSGGE++R++ L P +LL DE T+
Sbjct: 111 AAALD-LLARFAL----PDSILTKNITE---LSGGEKQRIALIRNLQFMPKILLLDEITS 162
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
LD + + M+ ++ VL H + I DK+I L
Sbjct: 163 ALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQP 209
|
Length = 223 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 7e-11
Identities = 33/93 (35%), Positives = 54/93 (58%), Gaps = 4/93 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A LL DP +LL DEPT+ +D+ S + ++ + KT++ H+
Sbjct: 602 LSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHR 659
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFL 264
S L+D+ D+II++ + R G KD L L
Sbjct: 660 TS--LLDLVDRIIVMDNGRIVADGPKDQVLEAL 690
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 9e-11
Identities = 39/146 (26%), Positives = 69/146 (47%), Gaps = 13/146 (8%)
Query: 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
LT E+L + A L R + RIA L L L+ R+G S G
Sbjct: 90 LTARENLKYFARLNGLSRKEIKARIA---ELSKRLQLLEYLDRRVGE--------FSTGM 138
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236
+++++ A L+ DP++L+ DEPT+GLD + K +++L ++ + + + E+
Sbjct: 139 KQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSS--HIMQEV 196
Query: 237 IDMFDKIILLADSRTAFIGSKDAALA 262
+ D++I+L GS +A A
Sbjct: 197 EALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 32/79 (40%), Positives = 50/79 (63%), Gaps = 4/79 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ ++ A LL DP +LL DEPT+ +D S +L +R+L KT++ H+
Sbjct: 141 LSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGD--KTLIIITHR 198
Query: 232 PSSELIDMFDKIILLADSR 250
PS L+D+ D+II++ R
Sbjct: 199 PS--LLDLVDRIIVMDSGR 215
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 47/162 (29%), Positives = 86/162 (53%), Gaps = 15/162 (9%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIALIN 145
G I ++GKPVEG + G ++Q++ P V +++ F + L +++ QR+ + +
Sbjct: 56 GSITLDGKPVEGP-GAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKM----QRLEIAH 110
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L ++GL ++ I LSGG+R+R+ A L +P LLL DEP LD+F
Sbjct: 111 QMLKKVGLEGAEKRYIWQ--------LSGGQRQRVGIARALAANPQLLLLDEPFGALDAF 162
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247
+ ++ ++ +L + K VL H E + M +++LL+
Sbjct: 163 TREQMQTLLLKLWQETGKQVLLITHD-IEEAVFMATELVLLS 203
|
Length = 255 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 30/91 (32%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L +P +LL DE T+ LD+ + ++ +R+++ + +T + H+
Sbjct: 138 LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVS--KGRTTIVIAHR 195
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S +++ DKII+L D R G+ + LA
Sbjct: 196 -LSTIVNA-DKIIVLKDGRIVERGTHEELLA 224
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 2e-10
Identities = 49/175 (28%), Positives = 83/175 (47%), Gaps = 18/175 (10%)
Query: 87 GDIRVNGKPVE----GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVK-AYQRI 141
G+IRVNG + +R ++ Q+ + T+ E++ D + A +
Sbjct: 376 GEIRVNGIDLRDLSPEAWRKQISWVSQNPYL-FAGTIRENILLARPDASDEEIIAALDQA 434
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
L+ + GL T IG LSGG+ +RL+ A LL+ +LLL DEPT
Sbjct: 435 GLLEFVPKPDGL----DTVIGEGGAG----LSGGQAQRLALARALLSPASLLLLDEPTAH 486
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
LD+ + +++ ++EL ++KTVL H+ E D+I++L + R G+
Sbjct: 487 LDAETEQIILQALQELA--KQKTVLVITHRL--EDAADADRIVVLDNGRLVEQGT 537
|
Length = 559 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 3e-10
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++ ++ H
Sbjct: 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITH 212
|
Length = 316 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 3e-10
Identities = 29/75 (38%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T +G LSGGER+RL+ A LL D +LL DEPT LD+ +A +L+ +
Sbjct: 462 DTVLGEGGAR----LSGGERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAA 517
Query: 218 TSQRKKTVLCTIHQP 232
S R TV+ H
Sbjct: 518 LSGR--TVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 3e-10
Identities = 39/173 (22%), Positives = 84/173 (48%), Gaps = 18/173 (10%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQ-HDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIA 142
G I+VN + G ++ ++Q ++LF LTV +++ L L ++ A Q+
Sbjct: 53 GSIKVNDQSHTGLAPYQRPVSMLFQENNLF-AHLTVRQNI---GLGLHPGLKLNAEQQ-E 107
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ ++G+ + LSGG+R+R++ A L+ +LL DEP + L
Sbjct: 108 KVVDAAQQVGIADYLDRLPEQ--------LSGGQRQRVALARCLVRPNPILLLDEPFSAL 159
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
D +++ ++++L S+R++T+L H S+ + +I +++ + +
Sbjct: 160 DPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVS 211
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 46/173 (26%), Positives = 88/173 (50%), Gaps = 15/173 (8%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++G+ + + G ++Q + LF P +TV E++ F LK+ +++K + A
Sbjct: 60 GEILLDGEDITDVPPEKRPIGMVFQSYALF-PHMTVEENVAFG--LKVRKKLKKAEIKAR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L +GL Q LSGG+++R++ A L+ +P +LL DEP + LD
Sbjct: 117 VEEALELVGL--EGF---ADRKPHQ---LSGGQQQRVALARALVPEPKVLLLDEPLSALD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
+ ++ + ++EL + T + H E + M D+I ++ D R +G+
Sbjct: 169 AKLREQMRKELKELQRELGITFVYVTH-DQEEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 3e-10
Identities = 51/184 (27%), Positives = 90/184 (48%), Gaps = 37/184 (20%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQHDLFSPSLT 118
S L+R F L ++ ++ ++G++R+ G+ P+E R G ++Q+ P LT
Sbjct: 44 STLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE--VRREVGMVFQYPNPFPHLT 101
Query: 119 VYEH----LYFMALLK----LDRRVK-AYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169
+Y++ + L+K LD RV+ A ++ AL + + L S
Sbjct: 102 IYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSN------------ 149
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
LSGG+R+RL A L P +LL DEPT +D +K+ ++ EL +++ T++
Sbjct: 150 --LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFEL--KKEYTIVLVT 205
Query: 230 HQPS 233
H P+
Sbjct: 206 HSPA 209
|
Length = 253 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.2 bits (147), Expect = 4e-10
Identities = 50/188 (26%), Positives = 90/188 (47%), Gaps = 35/188 (18%)
Query: 86 DGDIRVNGKPVEGK-----FRSACGFMYQH-DLFSPSLTVYEHLYF--MALLKLDRRVKA 137
G I V+G+ V K R G ++Q +LF P LTV E++ + + KL + +A
Sbjct: 56 SGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLF-PHLTVLENVTLAPVKVKKLSKA-EA 113
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
++ AL LL ++GL + LSGG+++R++ A L DP ++L DE
Sbjct: 114 REK-AL--ELLEKVGLADKADAYPAQ--------LSGGQQQRVAIARALAMDPKVMLFDE 162
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-F-----DKIILLADSRT 251
PT+ LD +++ +M++L ++ T++ H +M F D++I + +
Sbjct: 163 PTSALDPELVGEVLDVMKDL-AEEGMTMIIVTH-------EMGFAREVADRVIFMDQGKI 214
Query: 252 AFIGSKDA 259
G +
Sbjct: 215 IEEGPPEE 222
|
Length = 240 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 4e-10
Identities = 33/95 (34%), Positives = 54/95 (56%), Gaps = 4/95 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ + R TV+
Sbjct: 135 QGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGR--TVII 192
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ + D+II++ R GS D LA
Sbjct: 193 IAHRLST--VKNADRIIVMEKGRIVEQGSHDELLA 225
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 43/172 (25%), Positives = 82/172 (47%), Gaps = 23/172 (13%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTV 119
S L+RL L+ +I +G++ ++GK + R G ++Q + F ++
Sbjct: 40 STLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP--GSI 97
Query: 120 YEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
Y+++ A L+L + + L + L + R+ + LSGG+++
Sbjct: 98 YDNV---AYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALG------LSGGQQQ 148
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
RL A L +P +LL DEPT+ LD S +K+ ++ EL +++ T++ H
Sbjct: 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAEL--KKEYTIVIVTH 198
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 59.9 bits (146), Expect = 4e-10
Identities = 52/182 (28%), Positives = 84/182 (46%), Gaps = 19/182 (10%)
Query: 87 GDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I ++G V R G + Q D+F + TV E++ + V+ R A
Sbjct: 57 GRILIDGHDVRDYTLASLRRQIGLVSQ-DVFLFNDTVAENIAYGRPGATREEVEEAARAA 115
Query: 143 LINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ ++EL G T IG + LSGG+R+R++ A LL DP +L+ DE T+
Sbjct: 116 NAHEFIMELPEGY----DTVIGERGVK----LSGGQRQRIAIARALLKDPPILILDEATS 167
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
LD+ S + + L R T H+ S+ I+ D+I++L D + G+ +
Sbjct: 168 ALDTESERLVQAALERLMKNR--TTFVIAHRLST--IENADRIVVLEDGKIVERGTHEEL 223
Query: 261 LA 262
LA
Sbjct: 224 LA 225
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 5e-10
Identities = 40/126 (31%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
GF+YQ P T E++ M LL ++ AL +L +GL + + R S
Sbjct: 90 GFIYQFHHLLPDFTALENVA-MPLLIGKKKPAEINSRAL--EMLAAVGLEHRANHR--PS 144
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGER+R++ A L+ +P L+L DEPT LD+ +A + +++ EL +
Sbjct: 145 E------LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTA 198
Query: 225 VLCTIH 230
L H
Sbjct: 199 FLVVTH 204
|
Length = 233 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 7e-10
Identities = 29/84 (34%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R++ A L+ D +LL DEP LD ++++ ++ +L ++ K TVL HQ
Sbjct: 129 LSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQ 188
Query: 232 PSSELIDMFDKIILLADSRTAFIG 255
P + + +++ L + R A G
Sbjct: 189 P-EDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 7e-10
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 18/146 (12%)
Query: 87 GDIRVNGKPVEGK---FRSACGFMY---QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I +G+ + G R+ G Y +F P LTV E+L + + +
Sbjct: 58 GRIIFDGEDITGLPPHERARLGIAYVPEGRRIF-PRLTVEENL-LLGAYARRDKEAQERD 115
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + L L ++ R G+ LSGGE++ L+ A L++ P LLL DEP+
Sbjct: 116 LEEVYELFPRLKER--RNQRAGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVL 226
GL ++ ++EL + T+L
Sbjct: 166 GLAPKIVEEIFEAIKELRKEGGMTIL 191
|
Length = 237 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.2 bits (149), Expect = 8e-10
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 19/175 (10%)
Query: 87 GDIRVNGKPV----EGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRV-KAYQR 140
G I +NG + E R + Q LFS +L ++L D + A Q+
Sbjct: 393 GSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLR--DNLRLANPDASDEELWAALQQ 450
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ L L + +T +G LSGGER+RL+ A LL D L L DEPT
Sbjct: 451 VGLEKLLE---SAPDGLNTWLGEGGRR----LSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
GLD + +++ ++ E KT+L H+ ++ D+II+L + + G
Sbjct: 504 GLDPITERQVLALLFEHA--EGKTLLMVTHRLRG--LERMDRIIVLDNGKIIEEG 554
|
Length = 573 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 1e-09
Identities = 59/233 (25%), Positives = 99/233 (42%), Gaps = 40/233 (17%)
Query: 86 DGDIRVNGKPV----EGKFRSACGFMYQ-HDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQ 139
G+I ++G+ + + R G++ Q LF P LTV E++ + LL D+ + +
Sbjct: 55 SGEILIDGEDISDLDPVELRRKIGYVIQQIGLF-PHLTVAENIATVPKLLGWDKE-RIKK 112
Query: 140 RIALINSLLIELGLMNSQH-TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
R + LL +GL S++ R LSGG+++R+ A L DP +LL DEP
Sbjct: 113 RA---DELLDLVGLDPSEYADRYPHE-------LSGGQQQRVGVARALAADPPILLMDEP 162
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
LD + +L ++EL + KT++ H E + + D+I ++ + D
Sbjct: 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHD-IDEALKLADRIAVMDAGEIVQYDTPD 221
Query: 259 AALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDF 311
LA NPA+ ++ R R+ SV D
Sbjct: 222 EILA-------------NPANDFVEDF-------FGESERGLRLLSLVSVADA 254
|
Length = 309 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 45/133 (33%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
++ ++A ++ L+ L L + T IG T LSGG+R+R++ A L DP
Sbjct: 421 PEKIIEAAKLAGVHELI--LRLPDGYDTVIGPGGAT----LSGGQRQRIALARALYGDPK 474
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
L++ DEP + LD L ++ L R TV+ H+PS L+ DKI++L D R
Sbjct: 475 LVVLDEPNSNLDEEGEQALANAIKAL-KARGITVVVITHRPS--LLGCVDKILVLQDGRI 531
Query: 252 AFIGSKDAALAFL 264
A G +D LA L
Sbjct: 532 ARFGERDEVLAKL 544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 60.7 bits (148), Expect = 1e-09
Identities = 31/91 (34%), Positives = 54/91 (59%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+RL+ A LL+ P +LL DE T+ LD + + +++ + ++ + +TV+ H+
Sbjct: 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQI--LQGRTVIIIAHR 667
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ I D+II+L + GS + LA
Sbjct: 668 LST--IRSADRIIVLDQGKIVEQGSHEELLA 696
|
Length = 709 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 39/104 (37%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218
TRIG T LSGG+R+R++ A L DP L++ DEP + LDS + L +
Sbjct: 464 TRIGEGGAT----LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAA- 518
Query: 219 SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
R TV+ H+PS + DKI++L D R A G ++ LA
Sbjct: 519 KARGGTVVVIAHRPS--ALASVDKILVLQDGRIAAFGPREEVLA 560
|
Length = 580 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.5 bits (141), Expect = 2e-09
Identities = 42/146 (28%), Positives = 74/146 (50%), Gaps = 11/146 (7%)
Query: 86 DGDIRVNG-KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144
D DI G PV R G ++Q P++++Y+++ +A KL+ RV + ++
Sbjct: 70 DTDIYDRGVDPV--SIRRRVGMVFQKPNPFPAMSIYDNV--IAGYKLNGRVNRSEADEIV 125
Query: 145 NSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
S L + L + R+ S+++ LSGG+++RL A + P ++L DEP + LD
Sbjct: 126 ESSLKRVALWDEVKDRLKSNAME----LSGGQQQRLCIARTIAVKPEVILMDEPASALDP 181
Query: 205 FSASKLIRMMRELTSQRKKTVLCTIH 230
S K+ ++ EL K T++ H
Sbjct: 182 ISTLKIEELIEELK--EKYTIIIVTH 205
|
Length = 252 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 2e-09
Identities = 45/174 (25%), Positives = 82/174 (47%), Gaps = 27/174 (15%)
Query: 69 SELIRLF--LS-----QVIDDCIIDGD--IRVNGKPVEGKFRSACGFMYQH-DLFSPSLT 118
S L+RL L V +DG ++ + + R G ++QH +L S S T
Sbjct: 46 STLLRLINLLERPTSGSVF----VDGQDLTALSEAELR-QLRQKIGMIFQHFNLLS-SRT 99
Query: 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
V+E++ F L+L KA + + LL +GL + LSGG+++
Sbjct: 100 VFENVAFP--LELAGVPKA-EIKQRVAELLELVGLSDKADRYPAQ--------LSGGQKQ 148
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
R++ A L +P +LLCDE T+ LD + ++ +++++ + T++ H+
Sbjct: 149 RVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM 202
|
Length = 339 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-09
Identities = 45/177 (25%), Positives = 77/177 (43%), Gaps = 23/177 (12%)
Query: 101 RSACGFMYQHDLFSPSLTVYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159
+ G+++Q P L+V +L Y M +R + +R ++ LG+ +
Sbjct: 74 KRRIGYVFQEARLFPHLSVRGNLRYGM------KRARPSERRISFERVIELLGIGHLLGR 127
Query: 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219
G LSGGE++R++ LL+ P LLL DEP LD +++ + L +
Sbjct: 128 LPGR--------LSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG-------SKDAALAFLESQGY 269
+ +L H E++ + D++++L D R A G S D E QG
Sbjct: 180 EFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWLAREDQGS 235
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 59.8 bits (146), Expect = 2e-09
Identities = 47/177 (26%), Positives = 80/177 (45%), Gaps = 36/177 (20%)
Query: 87 GDIRVNGKPVEGK---FRSACGFMY------QHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G+I ++GKPV + G Y L +++ E + L L R +
Sbjct: 314 GEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLV-LDMSIAE---NITLASLRRFSRR 369
Query: 138 YQRI-----ALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
AL + L + S IG+ LSGG ++++ A L TDP
Sbjct: 370 GLIDRRKERALAERYIRRLRIKTPSPEQPIGT--------LSGGNQQKVVLARWLATDPK 421
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L+ DEPT G+D + +++ R++REL ++ K ++ I SSEL +++ L+D
Sbjct: 422 VLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILM--I---SSEL----PELLGLSD 469
|
Length = 500 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.1 bits (140), Expect = 2e-09
Identities = 42/140 (30%), Positives = 74/140 (52%), Gaps = 14/140 (10%)
Query: 85 IDGDIRVNGKPVEGK----FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY- 138
IDG + + GK V+ + R G ++Q ++F S +YE++ + KL +K
Sbjct: 58 IDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKS--IYENISYAP--KLHGMIKNKD 113
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ AL+ L ++GL ++ +++ LSGG+++RL A L P LLL DEP
Sbjct: 114 EEEALVVDCLQKVGLFEEVKDKLKQNALA----LSGGQQQRLCIARALAIKPKLLLLDEP 169
Query: 199 TTGLDSFSASKLIRMMRELT 218
T+ LD S+ + +++EL+
Sbjct: 170 TSALDPISSGVIEELLKELS 189
|
Length = 246 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.0 bits (140), Expect = 2e-09
Identities = 51/182 (28%), Positives = 84/182 (46%), Gaps = 20/182 (10%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I D DI + P+ + R G++ Q L+VY++L MA+L++ + A QR
Sbjct: 62 IDDEDISL--LPLHARARRGIGYLPQEASIFRRLSVYDNL--MAVLQIRDDLSAEQREDR 117
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
N L+ E + +H R S+ Q LSGGER+R+ A L +P +L DEP G+D
Sbjct: 118 ANELMEEF---HIEHLR---DSMGQS--LSGGERRRVEIARALAANPKFILLDEPFAGVD 169
Query: 204 SFSA---SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
S ++I +R+ VL T H E + + ++ +++ G+
Sbjct: 170 PISVIDIKRIIEHLRD----SGLGVLITDHN-VRETLAVCERAYIVSQGHLIAHGTPTEI 224
Query: 261 LA 262
L
Sbjct: 225 LQ 226
|
Length = 241 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 37/115 (32%), Positives = 51/115 (44%), Gaps = 14/115 (12%)
Query: 117 LTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
LT E+L M L L + A +R LL L + +G+ SGG
Sbjct: 81 LTGRENLEMMGRLYGLPKDE-AEERAE---ELLELFELGEAADRPVGT--------YSGG 128
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
R+RL A L+ P +L DEPTTGLD + + +R L + T+L T H
Sbjct: 129 MRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEE-GVTILLTTH 182
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 3e-09
Identities = 24/59 (40%), Positives = 32/59 (54%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LS G+R R A LL +P +L DEPT GLD + + ++E +R TVL T H
Sbjct: 154 LSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSH 212
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 3e-09
Identities = 51/187 (27%), Positives = 88/187 (47%), Gaps = 39/187 (20%)
Query: 87 GDIRVNGKPVE------GKFRSACGFMYQ---HDLFSPSLTVYEHLYFMAL-LKL-DRRV 135
G I +GKP++ K R + G ++Q + LFS S VY+ + F A+ LKL + V
Sbjct: 61 GRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSAS--VYQDVSFGAVNLKLPEDEV 118
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALL 193
+ AL R G + K LS G++KR++ A L+ +P +L
Sbjct: 119 RKRVDNAL---------------KRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVL 163
Query: 194 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF----DKIILLADS 249
+ DEPT GLD S++++++ E+ + T++ H ID+ D + ++ +
Sbjct: 164 VLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHD-----IDIVPLYCDNVFVMKEG 218
Query: 250 RTAFIGS 256
R G+
Sbjct: 219 RVILQGN 225
|
Length = 283 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 3e-09
Identities = 29/91 (31%), Positives = 53/91 (58%), Gaps = 1/91 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A L+ + +LL DEP + LD ++++ ++ +L +RK T+L H
Sbjct: 130 LSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHH 189
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
P + + D+++ L + R A GS L+
Sbjct: 190 P-EDAARIADRVVFLDNGRIAAQGSTQELLS 219
|
Length = 231 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 33/95 (34%), Positives = 56/95 (58%), Gaps = 4/95 (4%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
+ LSGG+R+R++ A L+ +P +L+ DE T+ LD S + ++R MRE+ R +TV+
Sbjct: 590 KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVII 647
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ S+ + D+II+L + A G + LA
Sbjct: 648 IAHRLST--VRACDRIIVLEKGQIAESGRHEELLA 680
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 59.0 bits (143), Expect = 4e-09
Identities = 34/97 (35%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R+ A +L +P L L DEPT LD +A + + E +++ T H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 232 PSSELI-DMFDKIILLADSRTAFIGSKDAALA-FLES 266
P E+I D+ DK I L + G+ D +A F+E
Sbjct: 229 P--EVIEDLSDKAIWLENGEIKEEGTPDEVVAVFMEG 263
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 4e-09
Identities = 30/91 (32%), Positives = 46/91 (50%), Gaps = 10/91 (10%)
Query: 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL---IRMMRELTS 219
S SI + + LSGG+R+RL A L +P +L+ DEP + LD L I ++
Sbjct: 89 SGSIAENI-LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA--- 144
Query: 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
T + H+P E + D+I++L D R
Sbjct: 145 -AGATRIVIAHRP--ETLASADRILVLEDGR 172
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 4e-09
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 15/172 (8%)
Query: 86 DGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + + GK + G R ++Q+ P LTV E++ +A+ ++ + +R A+
Sbjct: 39 SGGVILEGKQITEPGPDRMV---VFQNYSLLPWLTVRENIA-LAVDRVLPDLSKSERRAI 94
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + +GL + R G LSGG ++R++ A L P +LL DEP LD
Sbjct: 95 VEEHIALVGLTEAADKRPGQ--------LSGGMKQRVAIARALSIRPKVLLLDEPFGALD 146
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
+ + L + ++ + + TVL H L+ + D++++L + A IG
Sbjct: 147 ALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALL-LSDRVVMLTNGPAANIG 197
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.7 bits (143), Expect = 5e-09
Identities = 49/194 (25%), Positives = 84/194 (43%), Gaps = 30/194 (15%)
Query: 86 DGDIRVNGKPVEGKFRSAC-------GFMYQHDLFSPSLTVYEHLYFMALLK-----LDR 133
G+I ++GKPV F S ++Q P+L+V E+++ +DR
Sbjct: 62 SGEILIDGKPVA--FSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDR 119
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 193
+ +R LL LGL T +G LS +R+ + A L D +L
Sbjct: 120 K-AMRRRAR---ELLARLGLDIDPDTLVGD--------LSIAQRQMVEIARALSFDARVL 167
Query: 194 LCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253
+ DEPT L +L ++R L +Q + + H+ E+ ++ D+I +L D R
Sbjct: 168 ILDEPTAALTVKETERLFDLIRRLKAQGVAIIYIS-HRL-DEVFEIADRITVLRDGRV-- 223
Query: 254 IGSKDAALAFLESQ 267
+G++ A E +
Sbjct: 224 VGTRPTAAETSEDE 237
|
Length = 500 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 5e-09
Identities = 43/150 (28%), Positives = 68/150 (45%), Gaps = 28/150 (18%)
Query: 87 GDIRVNGKPVEGK-----FRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G IR +G+ + G R+ G++ + +F P LTV E+L + R + R
Sbjct: 55 GSIRFDGRDITGLPPHERARAGIGYVPEGRRIF-PELTVEENL-LLGAYARRRAKRK-AR 111
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + L L + G+ LSGGE++ L+ A L++ P LLL DEP+
Sbjct: 112 LERVYELFPRLKER--RKQLAGT--------LSGGEQQMLAIARALMSRPKLLLLDEPSE 161
Query: 201 GLDSFSASKLI----RMMRELTSQRKKTVL 226
GL A K++ +REL T+L
Sbjct: 162 GL----APKIVEEIFEAIREL-RDEGVTIL 186
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 6e-09
Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 21/150 (14%)
Query: 87 GDIRVNGKPV---EGKFRSA-----CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G I +G+ + G+ R F + +P +TV + L L++
Sbjct: 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL--AEPLRIHGGGSGA 403
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCD 196
+R A + LL +GL + LSGG+R+R++ A L +P LL+ D
Sbjct: 404 ERRARVAELLELVGL---------PPEFLDRYPHELSGGQRQRVAIARALALEPKLLILD 454
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
EP + LD ++++ ++++L + T L
Sbjct: 455 EPVSALDVSVQAQVLNLLKDLQEELGLTYL 484
|
Length = 539 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 6e-09
Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 22/172 (12%)
Query: 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G I VNG + R G ++Q P TVYE++ L + + + +
Sbjct: 57 GKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVAL-PLRVIGKPPREIR 115
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R ++ +L +GL + LSGGE++R++ A ++ PA+LL DEPT
Sbjct: 116 R--RVSEVLDLVGLKHKARA--------LPSQLSGGEQQRVAIARAIVNQPAVLLADEPT 165
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK-IILLADSR 250
LD + +++R+ E+ ++ TVL H EL++ ++ L D R
Sbjct: 166 GNLDPDLSWEIMRLFEEI-NRLGTTVLMATH--DLELVNRMRHRVLALEDGR 214
|
Length = 223 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 8e-09
Identities = 44/151 (29%), Positives = 73/151 (48%), Gaps = 24/151 (15%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G ++V G+ V + + G++ +H+ + V E+L F+A + + QR+
Sbjct: 57 GSVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEE 116
Query: 144 INSLLIEL-GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+IEL GL QH +IG LS G R+R+ A L+ DP +L+ DEPTTGL
Sbjct: 117 ----MIELVGLRPEQHKKIGQ--------LSKGYRQRVGLAQALIHDPKVLILDEPTTGL 164
Query: 203 DS---FSASKLIRMMRELTSQRKKTVLCTIH 230
D +I+ + + KT++ + H
Sbjct: 165 DPNQLVEIRNVIKNI-----GKDKTIILSTH 190
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 8e-09
Identities = 44/170 (25%), Positives = 83/170 (48%), Gaps = 17/170 (10%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVY 120
S L+R F ++ +I C I GDI NG+ + R G ++Q P ++Y
Sbjct: 46 STLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPK-SIY 104
Query: 121 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180
E++ + + ++ K I + L L + R+ S+++ LSGG+++RL
Sbjct: 105 ENVAYGPRIHGEKNKKTLDTI--VEKSLKGAALWDEVKDRLHDSALS----LSGGQQQRL 158
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
A L +P ++L DEP + LD + +K+ ++ +L +++ TV+ H
Sbjct: 159 CIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDL--KKEYTVIIVTH 206
|
Length = 253 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 1e-08
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 42/181 (23%)
Query: 86 DGDIRVNGKPVEG------KFRSACGFMYQH---DLFSPSLTVYEHLYFMAL-LKLD--- 132
G++ + G+P++ + R G ++Q+ LF+P TV E + F L L L
Sbjct: 56 SGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP--TVEEDVAFGPLNLGLSKEE 113
Query: 133 --RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLT 188
+RVK AL +G K LSGG++KR++ A L
Sbjct: 114 VEKRVKE----AL---------------KAVGMEGFENKPPHHLSGGQKKRVAIAGILAM 154
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLA 247
P +++ DEPT+GLD AS++++++ +L ++ T++ + H +L+ ++ DK+ +++
Sbjct: 155 KPEIIVLDEPTSGLDPMGASQIMKLLYDL-NKEGITIIISTHD--VDLVPVYADKVYVMS 211
Query: 248 D 248
D
Sbjct: 212 D 212
|
Length = 275 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.2 bits (135), Expect = 1e-08
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 30/216 (13%)
Query: 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEV----PNVDFSELIRLFLSQVIDDCIIDGDI 89
V+ I L + ++ A I NN P+ + L+++I+ I D I
Sbjct: 10 VFNISRLYLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE--IYDSKI 67
Query: 90 RVNGKPV----------EGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVK 136
+V+GK + K R G ++Q P L++Y+++ + +K R +K
Sbjct: 68 KVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIK 127
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
++ L ++GL + R+ S + LSGG+++RL+ A L P +LL D
Sbjct: 128 K-----IVEECLRKVGLWKEVYDRLNSPASQ----LSGGQQQRLTIARALALKPKVLLMD 178
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
EPT+ +D ++ + +++ EL + + ++ H P
Sbjct: 179 EPTSMIDIVNSQAIEKLITEL--KNEIAIVIVSHNP 212
|
Length = 257 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 44/176 (25%), Positives = 80/176 (45%), Gaps = 12/176 (6%)
Query: 86 DGDIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIA 142
G I G+ GF++QH +TV++++ F + + R + A
Sbjct: 56 SGTILFGGEDATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA 115
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
++ LL L+ Q + Q LSGG+R+R++ A L +P +LL DEP L
Sbjct: 116 KVHELL---KLV--QLDWLADRYPAQ---LSGGQRQRVALARALAVEPKVLLLDEPFGAL 167
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
D+ +L R +R L + T + H E +++ D+++++ R +G+ D
Sbjct: 168 DAKVRKELRRWLRRLHDELHVTTVFVTHD-QEEALEVADRVVVMNKGRIEQVGTPD 222
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 53.6 bits (130), Expect = 1e-08
Identities = 31/76 (40%), Positives = 38/76 (50%), Gaps = 7/76 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE+ RL+ A LL +P LLL DEPT LD S L ++E TV+ H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSH- 125
Query: 232 PSSELIDMF-DKIILL 246
+D KII L
Sbjct: 126 -DRYFLDQVATKIIEL 140
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-08
Identities = 50/191 (26%), Positives = 71/191 (37%), Gaps = 34/191 (17%)
Query: 84 IIDGDIRVNGKPVEGKFRSA----CGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
++ G++ P+ G + G+ QH D P TV E L
Sbjct: 367 LLAGEL----GPLSGTVKVGETVKIGYFDQHRDELDPDKTVLEEL---------SEGFPD 413
Query: 139 QRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + L G Q +G VLSGGE+ RL A LL P LLL DE
Sbjct: 414 GDEQEVRAYLGRFGFTGEDQEKPVG--------VLSGGEKARLLLAKLLLQPPNLLLLDE 465
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGS 256
PT LD S + + E + TVL H +D + +I L+ D F G
Sbjct: 466 PTNHLDIES----LEALEEALLDFEGTVLLVSHDR--YFLDRVATRIWLVEDKVEEFEGG 519
Query: 257 KDAALAFLESQ 267
+ L + +
Sbjct: 520 YEDYLEQKKER 530
|
Length = 530 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 1e-08
Identities = 49/185 (26%), Positives = 84/185 (45%), Gaps = 24/185 (12%)
Query: 87 GDIRVNGKPV----EGKFRSACGFMYQH-DLFSPSLTVYEHLYFM-ALLKLDR---RVKA 137
G+I ++G+ + + R G++ Q LF P +TV E++ + LLK + R +A
Sbjct: 56 GEIFIDGEDIREQDPVELRRKIGYVIQQIGLF-PHMTVEENIALVPKLLKWPKEKIRERA 114
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ +AL+ L + R LSGG+++R+ A L DP LLL DE
Sbjct: 115 DELLALVG--LDPAEFAD----RYPHE-------LSGGQQQRVGVARALAADPPLLLMDE 161
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257
P LD + +L + L + KT++ H E + D+I ++ + +G+
Sbjct: 162 PFGALDPITRDQLQEEFKRLQQELGKTIVFVTHD-IDEAFRLADRIAIMKNGEIVQVGTP 220
Query: 258 DAALA 262
D L
Sbjct: 221 DEILR 225
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 1e-08
Identities = 53/188 (28%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 87 GDIRVNGKPVEGK----FRSACGFMYQH---DLFSPSLTVYEHLYFMAL-LKLDRRVKAY 138
G + + G+P+ + R G ++Q+ +FSP TV + + F + L LD A+
Sbjct: 59 GSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP--TVEQDIAFGPINLGLDEETVAH 116
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ ++S L LGL R+ LSGGE+KR++ A + +P +L+ DEP
Sbjct: 117 R----VSSALHMLGL-EELRDRVPHH-------LSGGEKKRVAIAGVIAMEPQVLVLDEP 164
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI-DMFDKIILLADSRTAFIGSK 257
T GLD +LI + +L TV+ + HQ +L+ +M D I ++ R +
Sbjct: 165 TAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQ--LDLVPEMADYIYVMDKGR--IVAYG 220
Query: 258 DAALAFLE 265
FL+
Sbjct: 221 TVEEIFLQ 228
|
Length = 277 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 34/149 (22%), Positives = 56/149 (37%), Gaps = 21/149 (14%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + +NG P+ ++ +L+V E+L F D
Sbjct: 55 GRVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSD---------EQ 105
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L +GL + + LS G+++R++ A LL+ L + DEPTT LD
Sbjct: 106 VEEALARVGLNGFEDRPVAQ--------LSAGQQRRVALARLLLSGRPLWILDEPTTALD 157
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQP 232
++ M R V+ T HQ
Sbjct: 158 KAGVARFAEAMAGHC-ARGGMVVLTTHQD 185
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.8 bits (135), Expect = 2e-08
Identities = 40/171 (23%), Positives = 84/171 (49%), Gaps = 17/171 (9%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
G+I NG P+ + ++ G++ + P +TV + L ++A LK + + +++ +
Sbjct: 57 GEITWNGGPLSQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKL---QA 113
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
L L ++ + +I LS G ++++ F + ++ +P LL+ DEP +GLD +
Sbjct: 114 WLERLEIVGKKTKKIKE--------LSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVN 165
Query: 207 ASKLIRMMRELTSQRKKTVLCTIHQPS--SELIDMFDKIILLADSRTAFIG 255
L + EL + T++ + H+ EL D++++L +T G
Sbjct: 166 VELLKDAIFEL-KEEGATIIFSSHRMEHVEELC---DRLLMLKKGQTVLYG 212
|
Length = 300 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 2e-08
Identities = 33/115 (28%), Positives = 60/115 (52%), Gaps = 16/115 (13%)
Query: 120 YEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179
Y H+ ++ RR K R ++ + L + ++ +H +IG LSGG++KR
Sbjct: 106 YGHMGWL------RRAKKRDR-QIVTAALARVDMVEFRHRQIGE--------LSGGQKKR 150
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
+ A + ++L DEP TG+D + +++I ++REL + KT+L + H S
Sbjct: 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDE-GKTMLVSTHNLGS 204
|
Length = 272 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 2e-08
Identities = 45/168 (26%), Positives = 85/168 (50%), Gaps = 19/168 (11%)
Query: 87 GDIRVNGKPVEGKF---RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G + V GK +E R + G QH++ LTV EH+ F A LK ++++ L
Sbjct: 985 GTVLVGGKDIETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLK----GRSWEEAQL 1040
Query: 144 -INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ ++L + GL + ++ LSGG +++LS A + D +++ DEPT+G+
Sbjct: 1041 EMEAMLEDTGLHHKRNEEAQD--------LSGGMQRKLSVAIAFVGDAKVVVLDEPTSGV 1092
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
D +S + ++ + S R ++ T H ++L+ D+I +++ R
Sbjct: 1093 DPYSRRSIWDLLLKYRSGR-TIIMSTHHMDEADLLG--DRIAIISQGR 1137
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 2e-08
Identities = 32/100 (32%), Positives = 51/100 (51%), Gaps = 6/100 (6%)
Query: 159 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R S + + + LSGGER+R+ A L +P LLL DEPT LD + + + ++RE
Sbjct: 123 ARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRE 182
Query: 217 LTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFIG 255
L + TV+ +H + L + D +++L R G
Sbjct: 183 LAATG-VTVVAALHDLN--LAASYCDHVVVLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 2e-08
Identities = 45/183 (24%), Positives = 79/183 (43%), Gaps = 22/183 (12%)
Query: 85 IDGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHL-YFMALLKLD---RRVKAY 138
IDG+ + PVE R G ++Q P +T+ ++ LL R+ KA
Sbjct: 52 IDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKAL 111
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + L+ GL +H LSGG ++R+ A L +P +LL DE
Sbjct: 112 ELLKLV-------GLEEYEHRYPDE--------LSGGMQQRVGLARALAAEPDILLMDEA 156
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD + +++L + +KT++ H E I + D+I+++ +G+ D
Sbjct: 157 FSALDPLIRDSMQDELKKLQATLQKTIVFITHD-LDEAIRIGDRIVIMKAGEIVQVGTPD 215
Query: 259 AAL 261
L
Sbjct: 216 EIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.7 bits (134), Expect = 3e-08
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 12/149 (8%)
Query: 84 IIDG-DIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
I+DG D+ K R G ++QH S TV+ ++ L + + +++
Sbjct: 63 IVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV- 121
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
LL +GL + + + LSGG+++R++ A L ++P +LLCDE T+ L
Sbjct: 122 --TELLALVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDEATSAL 171
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
D + ++ +++E+ + T+L H+
Sbjct: 172 DPATTQSILELLKEINRRLGLTILLITHE 200
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 3e-08
Identities = 36/149 (24%), Positives = 58/149 (38%), Gaps = 19/149 (12%)
Query: 87 GDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++R NG + + ++ P L+ E+L+F A + +
Sbjct: 55 GEVRWNGTALAEQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIED---- 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
L +GL + LS G+++RL+ A L+ L + DEPTT LD
Sbjct: 111 ---ALAAVGLTGFEDLPAAQ--------LSAGQQRRLALARLWLSRAPLWILDEPTTALD 159
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQP 232
+ L ++R R VL T HQ
Sbjct: 160 KAGVALLAGLLRAHL-ARGGIVLLTTHQD 187
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 3e-08
Identities = 48/187 (25%), Positives = 78/187 (41%), Gaps = 40/187 (21%)
Query: 84 IIDGDIRVNGKPV---EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------D 132
G I + G+ V K R ++Q+ P +TVY+++ F LKL D
Sbjct: 52 PTSGRIYIGGRDVTDLPPKDRDI-AMVFQNYALYPHMTVYDNIAFG--LKLRKVPKDEID 108
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
RV+ + I LL + + LSGG+R+R++ ++ +P +
Sbjct: 109 ERVREVAELLQIEHLL-------DRKPK----------QLSGGQRQRVALGRAIVREPKV 151
Query: 193 LLCDEPTTGLDSFSASKLIRMMR----ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
L DEP + LD +KL MR L + T + H E + M D+I ++ D
Sbjct: 152 FLMDEPLSNLD----AKLRVQMRAELKRLQQRLGTTTIYVTHD-QVEAMTMADRIAVMND 206
Query: 249 SRTAFIG 255
+ IG
Sbjct: 207 GQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 4e-08
Identities = 24/46 (52%), Positives = 34/46 (73%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGGER+R+ A LLT P LL+ DEPTT LD +++++++REL
Sbjct: 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLREL 202
|
Length = 529 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 4e-08
Identities = 47/156 (30%), Positives = 80/156 (51%), Gaps = 20/156 (12%)
Query: 105 GFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163
G ++Q + LF P+LTV +++ + LK +R + + + LL +GL S+ G
Sbjct: 79 GIVFQSYALF-PNLTVADNIAYG--LK-NRGMGRAEVAERVAELLDLVGLPGSERKYPGQ 134
Query: 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK- 222
LSGG+++R++ A L T P LLL DEP + LD+ L +R+L QR+
Sbjct: 135 --------LSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQL--QRRL 184
Query: 223 --KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T++ T Q E + M D+I+++ +G+
Sbjct: 185 GVTTIMVTHDQ--EEALSMADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 4e-08
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE+KR++ A + P +LL DEPT GLD +++ ++R L ++ V+ T
Sbjct: 128 LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVIST 184
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 5e-08
Identities = 33/91 (36%), Positives = 53/91 (58%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++RL A LL D LLL DEPT GLD+ + +++ ++ E + KTVL H+
Sbjct: 476 LSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHR 533
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ FD+I ++ + + G+ LA
Sbjct: 534 LT--GLEQFDRICVMDNGQIIEQGTHQELLA 562
|
Length = 574 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (129), Expect = 6e-08
Identities = 43/174 (24%), Positives = 83/174 (47%), Gaps = 25/174 (14%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S +RLF ++ +I ++G+IR++G+ + K R G ++Q P +++
Sbjct: 43 STFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPK-SIF 101
Query: 121 EHLYFMALLKLDRRVKAYQRIALINSLLIE----LGLMNSQHTRIGSSSITQKVVLSGGE 176
E++ + RV + A I + E L + ++ S+ LSGG+
Sbjct: 102 ENVAY------GLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFA----LSGGQ 151
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
++RL A + P++LL DEP + LD S +K+ ++ EL ++ T++ H
Sbjct: 152 QQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL--KKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 6e-08
Identities = 27/59 (45%), Positives = 38/59 (64%), Gaps = 1/59 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R A L D ++L DEPTT LD +L+R+MREL + + KTV+ +H
Sbjct: 139 LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMREL-NTQGKTVVTVLH 196
|
Length = 255 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 7e-08
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 18/151 (11%)
Query: 87 GDIRVNGKP---VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++ G+P V + A ++ LT E+L+F +R A
Sbjct: 57 GEVYWQGEPIQNVRESYHQALLYLGHQPGIKTELTALENLHFW------QRFHGSGNAAT 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I L ++GL + +G LS G+++R++ A L+ L + DEP T LD
Sbjct: 111 IWEALAQVGLAGLEDLPVGQ--------LSAGQQRRVALARLWLSPAPLWILDEPFTALD 162
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234
+ L +M + VL T HQP
Sbjct: 163 KEGVALLTALMAAHA-AQGGIVLLTTHQPLP 192
|
Length = 209 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 7e-08
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 2/75 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R+ A L T P++LL DEP TGLD + L + EL + +L T H
Sbjct: 114 LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL-AGAGTAILMTTHD 172
Query: 232 PSSELIDMFDKIILL 246
++ + D+++LL
Sbjct: 173 -LAQAMATCDRVVLL 186
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 9e-08
Identities = 46/163 (28%), Positives = 72/163 (44%), Gaps = 34/163 (20%)
Query: 105 GFMYQHDLFSPSLTVYEHLYF-MALLKLDR-----RVKAYQRIALINSLLIELGLMNSQH 158
++Q P +TV E++ F + + K+ R RV R L++L
Sbjct: 45 NMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIKPRVLEALR-------LVQLEEF---- 93
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMREL 217
Q LSGG+++R++ A L+ P +LL DEP + LD KL +M EL
Sbjct: 94 ---ADRKPHQ---LSGGQQQRVALARALVFKPKILLLDEPLSALD----KKLRDQMQLEL 143
Query: 218 -TSQRK---KTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T Q + V T Q E + M D+I ++ + A IG+
Sbjct: 144 KTIQEQLGITFVFVTHDQ--EEAMTMSDRIAIMRKGKIAQIGT 184
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 52.9 bits (127), Expect = 1e-07
Identities = 39/161 (24%), Positives = 71/161 (44%), Gaps = 31/161 (19%)
Query: 86 DGDIRVNGKPV-------EGKFRSA-CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
G++ + G+P+ K R+ GF++Q + P+L E++ ALL+ + ++
Sbjct: 64 SGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQS 123
Query: 138 YQRIALINSLLIELGL------MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+LL +LGL + +Q LSGGE++R++ A P
Sbjct: 124 RNGAK---ALLEQLGLGKRLDHLPAQ--------------LSGGEQQRVALARAFNGRPD 166
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
+L DEPT LD + K+ ++ L + T++ H
Sbjct: 167 VLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL 207
|
Length = 228 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 1e-07
Identities = 56/213 (26%), Positives = 99/213 (46%), Gaps = 31/213 (14%)
Query: 30 GSVQVYAIVNL-------LVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQVID 81
G V+V VNL +M + S T++ F+ LI L+ ++V
Sbjct: 14 GQVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRV----------FNRLIELYPEARVSG 63
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQR 140
+ +DG +E + R F + + P+L+++E++ AL LKL+R VK+ +
Sbjct: 64 EVYLDGQDIFKMDVIELRRRVQMVFQIPNPI--PNLSIFENV---ALGLKLNRLVKSKKE 118
Query: 141 I-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ + L + L + R+ + + LSGG+++RL A L P +LL DEPT
Sbjct: 119 LQERVRWALEKAQLWDEVKDRLDAPAGK----LSGGQQQRLCIARALAFQPEVLLADEPT 174
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
LD + +K+ + EL ++ T++ H P
Sbjct: 175 ANLDPENTAKIESLFLEL--KKDMTIVLVTHFP 205
|
Length = 250 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 39/132 (29%), Positives = 63/132 (47%), Gaps = 24/132 (18%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E +F + K+ R+++ L ++GL + ++G + T LSGG
Sbjct: 131 MTVEEALEFFENIPKIARKLQT----------LCDVGL---GYIKLGQPATT----LSGG 173
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
E +R+ A EL T L + DEPTTGL KL+ +++ L + TV+ H
Sbjct: 174 EAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK-GNTVVVIEHN- 231
Query: 233 SSELIDMFDKII 244
++I D II
Sbjct: 232 -LDVIKCADWII 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 1e-07
Identities = 42/154 (27%), Positives = 67/154 (43%), Gaps = 27/154 (17%)
Query: 87 GDIRVNGKPVEGKFRSA-------CGFMYQHDLFSPSLTVYEHLYF----MALLKLDRRV 135
G+IRV+GK V +S G ++QH + P+LTV E++ +DRR
Sbjct: 59 GEIRVDGKEVR--IKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRR- 115
Query: 136 KAYQRIA-LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A RI L + + ++ LS GE++R+ L LL+
Sbjct: 116 QARARIKELSERYGLPVDP----DAKVAD--------LSVGEQQRVEILKALYRGARLLI 163
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
DEPT L A +L ++R L ++ K + T
Sbjct: 164 LDEPTAVLTPQEADELFEILRRLAAEGKTIIFIT 197
|
Length = 501 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 1e-07
Identities = 29/99 (29%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
T+IGS LSGG ++++ LLT P +L+ DEPT G+D + ++ +++
Sbjct: 384 GHRTQIGS--------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIA 435
Query: 216 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
EL + K ++ + P EL+ + D+I+++++ A I
Sbjct: 436 ELAKKDKGIIIISSEMP--ELLGITDRILVMSNGLVAGI 472
|
Length = 491 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 2e-07
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 85 IDGDIRVNGKPVEGKFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRR----VKAY 138
IDG + V K V + + ++Q L +P LT+ E+L +A + +R
Sbjct: 65 IDG-VDVTKKSVAKR-ANLLARVFQDPLAGTAPELTIEENL-ALAESRGKKRGLSSALNE 121
Query: 139 QRIALINSLL--IELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+R + L + LGL N RIG +LSGG+R+ LS L P +LL D
Sbjct: 122 RRRSSFRERLARLGLGLENRLSDRIG--------LLSGGQRQALSLLMATLHPPKILLLD 173
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
E T LD +A ++ + ++ + K T L H
Sbjct: 174 EHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTH 207
|
Length = 263 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 39/148 (26%), Positives = 70/148 (47%), Gaps = 19/148 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLY-----FMALLKLDRRVKAYQR 140
DG ++V K R+ ++QH +TV E++ + L K + R +A
Sbjct: 76 DGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA--- 132
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+ + + I+ + V LSGG+++R+S A L +P +LL DEPT+
Sbjct: 133 VKYLAKVGID-----------ERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTS 181
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCT 228
LD +++R+M++L + K V+ T
Sbjct: 182 ALDPELVGEVLRIMQQLAEEGKTMVVVT 209
|
Length = 257 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 2e-07
Identities = 41/172 (23%), Positives = 80/172 (46%), Gaps = 28/172 (16%)
Query: 84 IIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYF-MALLKL-----DRR 134
G+I ++G+ V + R ++Q+ P +TVYE++ F + L + D+R
Sbjct: 55 PTSGEILIDGRDVTDLPPEKRG-IAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKR 113
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
VK ++ LGL + + + LSGG+R+R++ A L+ P + L
Sbjct: 114 VKEVAKL---------LGLEHLLNRKPLQ--------LSGGQRQRVALARALVRKPKVFL 156
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
DEP + LD+ + +++L + T + H E + + D+I+++
Sbjct: 157 LDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVM 207
|
Length = 338 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 2e-07
Identities = 44/169 (26%), Positives = 76/169 (44%), Gaps = 41/169 (24%)
Query: 80 IDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLK 130
ID ++G++ GK PV R G ++Q + F S +Y+++ + ++
Sbjct: 92 IDAARVEGELTFRGKNVYDADVDPV--ALRRRIGMVFQKPNPFPKS--IYDNVAYGLKIQ 147
Query: 131 -----LDRRV-KAYQRIAL---INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181
+D RV ++ +R AL + L GL LSGG+++RL
Sbjct: 148 GYDGDIDERVEESLRRAALWDEVKDQLDSSGL-----------------DLSGGQQQRLC 190
Query: 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
A + DP ++L DEP + LD + SK+ ++ EL + TV+ H
Sbjct: 191 IARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEY--TVVIVTH 237
|
Length = 285 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 18/55 (32%), Positives = 34/55 (61%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGG+R+R+ A L +P L++ DEP + LD ++++ ++++L + T L
Sbjct: 110 LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYL 164
|
Length = 268 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 2e-07
Identities = 45/195 (23%), Positives = 93/195 (47%), Gaps = 20/195 (10%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ +I I G++ + G+ + + R G ++Q P ++YE++ + L
Sbjct: 54 MNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRL 112
Query: 130 KLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
VK + + + L + + + + S+++ LSGG+++R+ A L
Sbjct: 113 A---GVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALS----LSGGQQQRVCIARVLAV 165
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC-TIHQPS--SELIDMF--DKI 243
P ++L DEPT+ LD S++++ M+ EL Q ++ ++HQ S S+ F +
Sbjct: 166 KPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225
Query: 244 ILLADSRTAFIGSKD 258
I AD++ F+ K+
Sbjct: 226 IEFADTKQMFLNPKE 240
|
Length = 252 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 41/143 (28%), Positives = 64/143 (44%), Gaps = 13/143 (9%)
Query: 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
F+P LT E++Y L R + ++I I ELG + + +
Sbjct: 95 FNPELTGRENIYLNGRLLGLSRKEIDEKIDEIIE-FSELG--DFIDLPVKT--------Y 143
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
S G + RL+FA +P +LL DE D+ K R +REL Q K +L + H P
Sbjct: 144 SSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVS-HDP 202
Query: 233 SSELIDMFDKIILLADSRTAFIG 255
SS + + D+ ++L + F G
Sbjct: 203 SS-IKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 3e-07
Identities = 28/77 (36%), Positives = 45/77 (58%), Gaps = 9/77 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG ++++ A L DP +L+ DEPT G+D + +++ R++REL K +L
Sbjct: 105 LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLI---- 160
Query: 232 PSSELIDMFDKIILLAD 248
SSEL D+++ L D
Sbjct: 161 -SSEL----DELLGLCD 172
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 42/150 (28%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 87 GDIRVNGKPVEG-KFRS---ACGFMYQHDLFSPSLTVYEHLY--FMALLKLDRRVKAYQR 140
G+I ++G+P+ R A F+P T+ H +L KL ++ +A
Sbjct: 45 GEILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARA--- 101
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
LI L +GL + + + Q LSGG +R+ A LL +P L+ DEPTT
Sbjct: 102 --LILEALEAVGLPDPE--EVLKKYPFQ---LSGGMLQRVMIALALLLEPPFLIADEPTT 154
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LD + +++++++REL +L H
Sbjct: 155 DLDVVNQARVLKLLRELRQLFGTGILLITH 184
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 3e-07
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL--INSLLIELGLMNSQHTRIG 162
G+++Q P TV +L + R + Q +AL I LL R
Sbjct: 79 GYVFQDARLFPHYTVRGNLRYGM--WKSMRAQFDQLVALLGIEHLL----------DRYP 126
Query: 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
+ LSGGE++R++ LLT P LLL DEP LD +++ + L +
Sbjct: 127 GT-------LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEIN 179
Query: 223 KTVLCTIHQPSSELIDMFDKIILLADSR 250
+L H E++ + D++++L + +
Sbjct: 180 IPILYVSHSL-DEVLRLADRVVVLENGK 206
|
Length = 352 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 3e-07
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 31/165 (18%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSP-SLTV 119
S L+R ++ ++ I+G + +G+ + K R G ++Q +P +++
Sbjct: 41 STLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQK--PNPFPMSI 98
Query: 120 YEHLYFMALLK-------LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
Y+++ + L LD V+ L + L + R+ S++ L
Sbjct: 99 YDNIAYGPRLHGIKDKKELDEIVEE---------SLKKAALWDEVKDRLHDSALG----L 145
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
SGG+++RL A L +P +LL DEPT+ LD + K+ +++EL
Sbjct: 146 SGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQEL 190
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 53.0 bits (128), Expect = 3e-07
Identities = 35/114 (30%), Positives = 57/114 (50%), Gaps = 22/114 (19%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E +F A+ K+ R+++ L+++GL + ++G + T LSGG
Sbjct: 784 MTVEEALEFFEAIPKIARKLQ----------TLVDVGL---GYIKLGQPATT----LSGG 826
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
E +R+ A EL T L + DEPTTGL KL+ ++ L + TV+
Sbjct: 827 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDK-GNTVI 879
|
Length = 935 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 4e-07
Identities = 39/159 (24%), Positives = 66/159 (41%), Gaps = 19/159 (11%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164
++Q+ P L V +++ F L+ + KA I + + L +
Sbjct: 82 ALLFQNYALFPHLKVEDNVAFG--LRAQKMPKA-----DIAERVAD-ALKLVGLGDAAAH 133
Query: 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS----FSASKLIRMMRELTSQ 220
Q LSGG ++R++ A + +P +LL DEP + LD+ ++ + EL
Sbjct: 134 LPAQ---LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPEL 190
Query: 221 RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259
T+LC H L + DK ++ D R A G A
Sbjct: 191 ---TILCVTHDQDDALT-LADKAGIMKDGRLAAHGEPQA 225
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 4e-07
Identities = 34/117 (29%), Positives = 50/117 (42%), Gaps = 15/117 (12%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS 146
+ R++ P + G ++Q L P L+V ++L L L +K R N+
Sbjct: 65 NEQRLDMLPAA---QRQIGILFQDALLFPHLSVGQNL----LFALPATLKGNARRNAANA 117
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
L GL + H LSGG+R R++ LL P LL DEP + LD
Sbjct: 118 ALERSGLDGAFHQ--------DPATLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 4e-07
Identities = 38/141 (26%), Positives = 69/141 (48%), Gaps = 22/141 (15%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A+ L +P +++ DE T+ LD ++ ++M +L RKKT++ H
Sbjct: 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITH- 201
Query: 232 PSSELIDM-----FDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFLIK 283
DM DK+I+ ++ + G L LE P+ Y + +K
Sbjct: 202 ------DMDEAILADKVIVFSEGKLIAQGKPKEILNNKEILEKAKIDSPFIYKLSK-KLK 254
Query: 284 SLAVTTN-DELSSRRRLKRIC 303
+ T N +EL +++IC
Sbjct: 255 GIDPTYNEEEL-----IEQIC 270
|
Length = 271 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 5e-07
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 1/79 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P LLL DEP LD+ + ++ ++ L Q TVL H
Sbjct: 134 LSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHD 193
Query: 232 PSSELIDMFDKIILLADSR 250
SE + M D+++L+ + +
Sbjct: 194 -VSEAVAMADRVLLIEEGK 211
|
Length = 257 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 5e-07
Identities = 24/59 (40%), Positives = 33/59 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LS G+R R A LL P +L DEPT GLD + + + ++E +R+ TVL T H
Sbjct: 157 LSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
|
Length = 325 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.3 bits (126), Expect = 5e-07
Identities = 22/59 (37%), Positives = 37/59 (62%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R+ A L +P LL+ DEPTT LD ++++ +++EL ++ +L H
Sbjct: 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITH 216
|
Length = 534 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (121), Expect = 6e-07
Identities = 39/157 (24%), Positives = 71/157 (45%), Gaps = 35/157 (22%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL------------LKLDRR 134
DIR K R+ G+++Q L+V E++ AL +++
Sbjct: 79 RDIR--------KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQK 130
Query: 135 VKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+A Q L +G+++ H R+ + LSGG+++R++ A L+ ++L
Sbjct: 131 QRALQA-------LTRVGMVHFAHQRVST--------LSGGQQQRVAIARALMQQAKVIL 175
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
DEP LD SA ++ +R++ TV+ T+HQ
Sbjct: 176 ADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQ 212
|
Length = 262 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 7e-07
Identities = 45/197 (22%), Positives = 84/197 (42%), Gaps = 43/197 (21%)
Query: 82 DCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY--- 138
D G+IR+NGK + + SP V + MA + RR +
Sbjct: 313 DKRAGGEIRLNGKDISPR--------------SPLDAVKKG---MAYITESRRDNGFFPN 355
Query: 139 ----QRIALINSLLI-----ELGLMNSQHTR-----------IGSSSITQKVV-LSGGER 177
Q +A+ SL +GL + + + S+ Q + LSGG +
Sbjct: 356 FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQ 415
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237
+++ + L P +++ DEPT G+D + +++ ++MR+L K ++ + P E+I
Sbjct: 416 QKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELP--EII 473
Query: 238 DMFDKIILLADSRTAFI 254
+ D+I + + R I
Sbjct: 474 TVCDRIAVFCEGRLTQI 490
|
Length = 510 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (121), Expect = 7e-07
Identities = 26/64 (40%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
TQ + LSGG+++RL A L T+P +LL DEPT+ LD S K+ ++ +L + K T++
Sbjct: 151 TQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKL--KEKYTIV 208
Query: 227 CTIH 230
H
Sbjct: 209 IVTH 212
|
Length = 259 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 7e-07
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 14/83 (16%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI- 229
VLSGGE++RL+FA LL P + DE T+ LD S +L ++++EL T+
Sbjct: 91 VLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--------GITVI 142
Query: 230 ---HQPSSELIDMFDKIILLADS 249
H+PS L D+++ L
Sbjct: 143 SVGHRPS--LWKFHDRVLDLDGE 163
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 24/149 (16%)
Query: 86 DGDIRVNGKPVEG-----KFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G IR++G+ + + R+ ++ Q ++F P LTV E+L L L + +
Sbjct: 54 SGSIRLDGEDITKLPPHERARAGIAYVPQGREIF-PRLTVEENL----LTGLAALPRRSR 108
Query: 140 RI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+I I L L M R G LSGG++++L+ A L+T P LLL DEP
Sbjct: 109 KIPDEIYELFPVLKEM--LGRRGG--------DLSGGQQQQLAIARALVTRPKLLLLDEP 158
Query: 199 TTGLDSFSASKLI-RMMRELTSQRKKTVL 226
T G+ S K I R++R L ++ +L
Sbjct: 159 TEGIQP-SIIKDIGRVIRRLRAEGGMAIL 186
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 8e-07
Identities = 44/170 (25%), Positives = 78/170 (45%), Gaps = 17/170 (10%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
G I ++G + RS G + Q LFS T+ E++ D V +
Sbjct: 57 KGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSG--TIMENIRLGRPNATDEEVIEAAK 114
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
A + +++L N T +G + LS GER+ L+ A +L DP +L+ DE T+
Sbjct: 115 EAGAHDFIMKL--PNGYDTVLGENGGN----LSQGERQLLAIARAMLRDPKILILDEATS 168
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+D+ + + + +L + +T + H+ S+ I DKI++L D +
Sbjct: 169 NIDTETEKLIQEALEKL--MKGRTSIIIAHRLST--IKNADKILVLDDGK 214
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 9e-07
Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 10/98 (10%)
Query: 171 VLSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGE++R+ A + L DEPT+ LD +R+ R+L +
Sbjct: 135 TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREG-GA 193
Query: 225 VLCTIHQPSSELIDMF-DKIILLADSRTAFIGSKDAAL 261
VL +H + L + D+I+LL R GS L
Sbjct: 194 VLAVLHDLN--LAAQYADRIVLLHQGRVIASGSPQDVL 229
|
Length = 259 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (120), Expect = 9e-07
Identities = 42/169 (24%), Positives = 81/169 (47%), Gaps = 15/169 (8%)
Query: 87 GDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
GD+ + G+ + +FR G ++Q P +++ +++ +A ++ + V +
Sbjct: 81 GDVLLGGRSIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNV--LAGVRAHKLVPRKEFR 137
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
+ + L E+GL ++ R+ S LSGG+++ L A L +P +LL DEPT+
Sbjct: 138 GVAQARLTEVGLWDAVKDRLSDSPFR----LSGGQQQLLCLARTLAVNPEVLLLDEPTSA 193
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
LD + K+ +R L + TV+ H ++ + D+ L D R
Sbjct: 194 LDPTTTEKIEEFIRSLAD--RLTVIIVTHN-LAQAARISDRAALFFDGR 239
|
Length = 276 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 9e-07
Identities = 40/165 (24%), Positives = 77/165 (46%), Gaps = 29/165 (17%)
Query: 79 VIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALL--- 129
+I I+G++ ++G+ + R G ++Q P +++Y+++ +
Sbjct: 55 LIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI 113
Query: 130 ----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
KLD V+ + A L + R+ S++ LSGG+++RL A
Sbjct: 114 KDKKKLDEIVEKSLKGA---------ALWDEVKDRLKKSALG----LSGGQQQRLCIARA 160
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
L +P +LL DEPT+ LD S K+ +++EL ++ T++ H
Sbjct: 161 LAVEPEVLLMDEPTSALDPISTLKIEELIQEL--KKDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 1e-06
Identities = 37/174 (21%), Positives = 59/174 (33%), Gaps = 31/174 (17%)
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ A L+ LG + + S LSGG R+R++ A LL +P LLL D
Sbjct: 128 GWTLEARAEEALLGLGF-PDEDRPVSS--------LSGGWRRRVALARALLEEPDLLLLD 178
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS------- 249
EPT LD S L ++ TV+ H +D IL D
Sbjct: 179 EPTNHLDLESIEWLEDYLKR----YPGTVIVVSH--DRYFLDNVATHILELDRGKLTPYK 232
Query: 250 --RTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKR 301
++++ K L + Y + ++ + K+
Sbjct: 233 GNYSSYLEQKAERLRQEAAA-------YEKQQKELAKEQEWIRRGKAAASKAKK 279
|
Length = 530 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (121), Expect = 1e-06
Identities = 31/102 (30%), Positives = 46/102 (45%), Gaps = 19/102 (18%)
Query: 172 LSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGE++R+ A E P LL DEPT+ LD ++R+ R+L +R V
Sbjct: 135 LSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAV 194
Query: 226 LCTIHQPSSELID-----MF-DKIILLADSRTAFIGSKDAAL 261
+ +H D + D+I+LL R G+ L
Sbjct: 195 IVVLH-------DLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 30/131 (22%), Positives = 58/131 (44%), Gaps = 16/131 (12%)
Query: 87 GDIRVNGKPVE-GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G I+++G ++ AC ++ + P+LTV E+L F A + + +
Sbjct: 57 GTIKLDGGDIDDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAV- 115
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
GL H G LS G+++R++ A L+++ + + DEPT LD+
Sbjct: 116 ------GLAPLAHLPFG--------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAA 161
Query: 206 SASKLIRMMRE 216
+ + ++R
Sbjct: 162 AVALFAELIRA 172
|
Length = 207 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 1e-06
Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
Q + LSGGE +R++ A LL + L DEP+ LD R +R L+ + KKT L
Sbjct: 68 QYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALV 127
Query: 228 TIH 230
H
Sbjct: 128 VEH 130
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 1e-06
Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 21/108 (19%)
Query: 117 LTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+TV E + +F A+ + R+++ L ++GL + R+G + T LSGG
Sbjct: 791 MTVEEAYEFFEAVPSISRKLQ----------TLCDVGL---GYIRLGQPATT----LSGG 833
Query: 176 ERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
E +R+ A EL T L + DEPTTGL KL+ +++ L +
Sbjct: 834 EAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDK 881
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 32/91 (35%), Positives = 45/91 (49%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R+ A L +LL DEPT LD + + ++R L KT + IH
Sbjct: 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDD-GKTAVAAIH- 197
Query: 232 PSSELIDMF-DKIILLADSRTAFIGSKDAAL 261
+L + D+++LLAD R G L
Sbjct: 198 -DLDLAARYCDELVLLADGRVRAAGPPADVL 227
|
Length = 402 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-06
Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 172 LSGGERKRLSFATEL---LTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC 227
LSGGE++ + A L P L + DE GLD L + E + V+
Sbjct: 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEH-LVKGAQVIV 136
Query: 228 TIHQPSSELIDMFDKII 244
H P EL ++ DK+I
Sbjct: 137 ITHLP--ELAELADKLI 151
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 51.2 bits (122), Expect = 2e-06
Identities = 42/153 (27%), Positives = 77/153 (50%), Gaps = 16/153 (10%)
Query: 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
++++YE++ F VK + A I+ IE L N T +G + LSGG
Sbjct: 1309 NMSIYENIKFGKEDATREDVKRACKFAAIDEF-IE-SLPNKYDTNVGPYGKS----LSGG 1362
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235
+++R++ A LL +P +LL DE T+ LDS S + + + ++ + KT++ H+ +S
Sbjct: 1363 QKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIAS- 1421
Query: 236 LIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268
I DKI++ + D +F+++ G
Sbjct: 1422 -IKRSDKIVVF--------NNPDRTGSFVQAHG 1445
|
Length = 1466 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 39/159 (24%), Positives = 71/159 (44%), Gaps = 27/159 (16%)
Query: 87 GDIRVNG-------------KPVEGK----FRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
G IRVNG KP + + R+ G ++QH +TV E++ +
Sbjct: 61 GSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVH 120
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
L V + I L ++G+ LSGG+++R++ A L +
Sbjct: 121 VL--GVSKAEAIERAEKYLAKVGIAEKADA--------YPAHLSGGQQQRVAIARALAME 170
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
P ++L DEPT+ LD +++++M++L + + V+ T
Sbjct: 171 PEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVT 209
|
Length = 256 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 2e-06
Identities = 30/94 (31%), Positives = 47/94 (50%), Gaps = 9/94 (9%)
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
QR+ LL LGL + + LSGG+++R+S A L+ ++L DEP
Sbjct: 120 QRLLRAQELLQRLGLEDRVEYQPSQ--------LSGGQQQRVSIARALMNGGQVILADEP 171
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
T LDS S +++ ++ +L R TV+ H P
Sbjct: 172 TGALDSHSGEEVMAILHQL-RDRGHTVIIVTHDP 204
|
Length = 648 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 2e-06
Identities = 52/178 (29%), Positives = 88/178 (49%), Gaps = 18/178 (10%)
Query: 87 GDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR--I 141
G IR +G V + R GF++QH +TV++++ F L L RR +R
Sbjct: 57 GHIRFHGTDVSRLHARDRKV-GFVFQHYALFRHMTVFDNIAF-GLTVLPRR----ERPNA 110
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A I + + +L M Q + Q LSGG+++R++ A L +P +LL DEP
Sbjct: 111 AAIKAKVTQLLEM-VQLAHLADRYPAQ---LSGGQKQRVALARALAVEPQILLLDEPFGA 166
Query: 202 LDSFSASKLIRMMRELTSQRKKT-VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
LD+ +L R +R+L + K T V T Q E +++ D++++++ G+ D
Sbjct: 167 LDAQVRKELRRWLRQLHEELKFTSVFVTHDQ--EEAMEVADRVVVMSQGNIEQAGTPD 222
|
Length = 353 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.9 bits (116), Expect = 3e-06
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L TDP +LL DEPT+ LD + + + ++ +L + K T+L H
Sbjct: 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDL--KNKVTILIVTH 218
|
Length = 265 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.8 bits (116), Expect = 3e-06
Identities = 39/173 (22%), Positives = 81/173 (46%), Gaps = 24/173 (13%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S IR ++ +I +C I+G + + G+ + R G ++Q P +++Y
Sbjct: 52 STFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFP-MSIY 110
Query: 121 EHLYFMALLKLDRRVKAYQRIAL---INSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177
+++ + R+ + L + + L L + R+ S +++ LSGG++
Sbjct: 111 DNVAY------GPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALS----LSGGQQ 160
Query: 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+RL A L P ++L DEPT+ LD S +++ ++ L ++ T++ H
Sbjct: 161 QRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNL--KKDYTIVIVTH 211
|
Length = 258 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 4e-06
Identities = 45/151 (29%), Positives = 64/151 (42%), Gaps = 14/151 (9%)
Query: 81 DDCIIDGDIRVNGKPVE---GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
D + GD V GK + G+ Q D LT EHLY A L R V A
Sbjct: 1988 DTTVTSGDATVAGKSILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARL---RGVPA 2044
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ + N + LGL G+ SGG +++LS A L+ P L+L DE
Sbjct: 2045 EEIEKVANWSIQSLGLSLYADRLAGT--------YSGGNKRKLSTAIALIGCPPLVLLDE 2096
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
PTTG+D + L + + + + VL +
Sbjct: 2097 PTTGMDPQARRMLWNTIVSIIREGRAVVLTS 2127
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 4e-06
Identities = 20/60 (33%), Positives = 36/60 (60%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L P ++L DE T+ LD +++ ++R L S+ T+L H+
Sbjct: 147 LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHE 206
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 5e-06
Identities = 30/103 (29%), Positives = 51/103 (49%), Gaps = 6/103 (5%)
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
L +L R L+ L + L + + R+ +++ LSGG+++RL A L
Sbjct: 161 LARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALG----LSGGQQQRLCIARCLA 216
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
DP ++L DEP + LD + SK+ ++ EL + TV+ H
Sbjct: 217 VDPEVILMDEPASALDPIATSKIEDLIEELAEEY--TVVVVTH 257
|
Length = 305 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 54/228 (23%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC--------GFMYQHDLFSPSLTVY 120
S L+R ++++I+ G + ++G+ + R ++Q P TV
Sbjct: 64 STLLRC-INRLIE--PTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFALLPHRTVL 120
Query: 121 EHLYF----MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
E++ F + + +R +A + + L+ GL +H LSGG
Sbjct: 121 ENVAFGLEVQGVPRAEREERAAEALELV-------GLEGWEHKYPDE--------LSGGM 165
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRE---LTSQRKKTVLCTIHQ 231
++R+ A L DP +LL DE + LD LIR M E L ++ +KT++ H
Sbjct: 166 QQRVGLARALAVDPDILLMDEAFSALDP-----LIRREMQDELLRLQAELQKTIVFITHD 220
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPAD 279
E + + D+I ++ D R +G+ + L NPA+
Sbjct: 221 L-DEALRLGDRIAIMKDGRLVQVGTPEEILT-------------NPAN 254
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 5e-06
Identities = 25/86 (29%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + +P +L+ DEPT GLD +++ ++EL + T++ H
Sbjct: 145 LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSH- 203
Query: 232 PSSELIDMF-DKIILLADSRTAFIGS 256
S E + D+II++ + G+
Sbjct: 204 -SMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 48.2 bits (115), Expect = 5e-06
Identities = 47/186 (25%), Positives = 89/186 (47%), Gaps = 31/186 (16%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQH-DLFSPSL 117
S ++R F L+ +I ++G + +GK PVE R G ++Q + F S
Sbjct: 50 STILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE--VRRRIGMVFQKPNPFPKS- 106
Query: 118 TVYEHLYFMALLKLDRRVKAYQ--RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175
+Y+++ + A R+ Y+ L+ L + L + ++ S ++ LSGG
Sbjct: 107 -IYDNIAYGA------RINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLS----LSGG 155
Query: 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH--QPS 233
+++RL A + P ++L DEP + LD S ++ +M EL + + T++ H Q +
Sbjct: 156 QQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHEL--KEQYTIIIVTHNMQQA 213
Query: 234 SELIDM 239
+ + DM
Sbjct: 214 ARVSDM 219
|
Length = 264 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 5e-06
Identities = 31/100 (31%), Positives = 48/100 (48%), Gaps = 2/100 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
SGGE+KR LL +P L + DEP +GLD + + + L + + ++ T +Q
Sbjct: 145 FSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQ 204
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPC 271
+ I DK+ +L D R G + A LE +GY
Sbjct: 205 RLLDYIKP-DKVHVLYDGRIVKSGDPELAE-ELEEKGYDW 242
|
Length = 251 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 6e-06
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V LSGG+R+R++ A +L D +LL DE T+ LD+ S + + + L R T L
Sbjct: 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGR--TTLIIA 532
Query: 230 HQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
H+ ++ + D+I+++ R G+ +A
Sbjct: 533 HRLAT--VLKADRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 6e-06
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 26/178 (14%)
Query: 87 GDIRVNGKPVEG--KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G+I ++GK + + ++Q+ LF P LTV+E++ F L+L + KA +
Sbjct: 55 GEILLDGKDITNLPPHKRPVNTVFQNYALF-PHLTVFENIAFG--LRLKKLPKAEIK-ER 110
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L + L + + LSGG+++R++ A L+ +P +LL DEP LD
Sbjct: 111 VAEALDLVQLEGYANRKPSQ--------LSGGQQQRVAIARALVNEPKVLLLDEPLGALD 162
Query: 204 SFSASKLIRMMR-ELTSQRKKT----VLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256
KL + M+ EL +K+ V T Q E + M D+I ++ + IG+
Sbjct: 163 ----LKLRKDMQLELKRLQKELGITFVFVTHDQ--EEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 6e-06
Identities = 50/167 (29%), Positives = 90/167 (53%), Gaps = 29/167 (17%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTV 119
S L+R F ++ ++D+C I+G+IR++G+ + K R G ++Q + F S +
Sbjct: 65 STLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKS--I 122
Query: 120 YEHLYFMALLKL----DRRV--KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173
YE++ + L+L +RRV +A +R +L + L + R+ ++ LS
Sbjct: 123 YENVVYG--LRLQGINNRRVLDEAVER-SLRGA-----ALWDEVKDRLHENAFG----LS 170
Query: 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
GG+++RL A + +P +LL DEPT+ LD S K+ ++ EL S+
Sbjct: 171 GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSK 217
|
Length = 272 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 6e-06
Identities = 41/194 (21%), Positives = 88/194 (45%), Gaps = 18/194 (9%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ +I + I+G++ ++GK + K R G ++Q P +++Y+++ + +
Sbjct: 53 MNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRI 111
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
+ K +I + L + L + + S++ LSGG+++RL A +
Sbjct: 112 HGIKDKKELDKI--VEWALKKAALWDEVKDDLKKSALK----LSGGQQQRLCIARTIAVK 165
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-----MFDKII 244
P ++L DEPT+ LD S K+ +M EL + ++ Q +S + D + +I
Sbjct: 166 PDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLI 225
Query: 245 LLADSRTAFIGSKD 258
+ F+ +
Sbjct: 226 EFNKTEKIFLEPQK 239
|
Length = 251 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 20/48 (41%), Positives = 30/48 (62%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRE 200
|
Length = 258 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 7e-06
Identities = 24/60 (40%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGER+R++ LL+ P +LL DEPT LD+ S + L + ++E TV+ H
Sbjct: 161 KLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PGTVVAVTH 216
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 7e-06
Identities = 47/170 (27%), Positives = 82/170 (48%), Gaps = 30/170 (17%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSL---TVYE 121
S LI+L ++++ID +G I ++G ++ R G ++Q P L TV +
Sbjct: 43 STLIKL-INRLIDP--TEGSILIDGVDIKTIDVIDLRRKIGMVFQQ----PHLFEGTVKD 95
Query: 122 HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV-LSGGERKRL 180
++ + +LK ++ V ++++ GL TR V LSGGE +R+
Sbjct: 96 NIEYGPMLKGEKNVDVEYYLSIV-------GLNKEYATR--------DVKNLSGGEAQRV 140
Query: 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
S A L +P +LL DEPT+ LD S + ++ +L ++ TV+ H
Sbjct: 141 SIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITH 190
|
Length = 241 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 7e-06
Identities = 21/46 (45%), Positives = 29/46 (63%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A L P +LL DEPT+ LD S K+ ++ EL
Sbjct: 150 LSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITEL 195
|
Length = 253 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 30/88 (34%), Positives = 38/88 (43%), Gaps = 10/88 (11%)
Query: 172 LSGGERKRLSFATEL---------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
LSGGE R+ FA L P LL DEPT LD +L+ +R L
Sbjct: 146 LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWN 205
Query: 223 KTVLCTIHQPSSELIDMFDKIILLADSR 250
VL +H P+ D+I +LAD
Sbjct: 206 LGVLAIVHDPNLA-ARHADRIAMLADGA 232
|
Length = 272 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 8e-06
Identities = 33/99 (33%), Positives = 53/99 (53%), Gaps = 8/99 (8%)
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211
L T IG + V+LSGG+R+RL+ A LL D +L+ DE T+ LD+ S +
Sbjct: 454 KLPLGLDTPIGENG----VLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQ 509
Query: 212 RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+ L + +T L H+ S+ I+ D+I+++ D R
Sbjct: 510 AALERL--MQGRTTLVIAHRLST--IEKADRIVVMDDGR 544
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 8e-06
Identities = 31/91 (34%), Positives = 48/91 (52%), Gaps = 8/91 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T IG + LS G+ +RL+ A LL LLL DEPT LD+ S +++ +
Sbjct: 476 DTPIGDQAAG----LSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
S+R+ T++ T HQ +L D+I ++ D
Sbjct: 532 -SRRQTTLMVT-HQ-LEDLAQW-DQIWVMQD 558
|
Length = 588 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 44/159 (27%), Positives = 82/159 (51%), Gaps = 20/159 (12%)
Query: 80 IDDCIIDGDIRVNG-KPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA 137
+ D ID ++ K + + R GF++Q+ +LF P TV E++ ++ VK
Sbjct: 62 VGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLF-PHRTVLENIIEGPVI-----VKG 115
Query: 138 YQR---IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194
+ A LL ++GL + +S ++ LSGG+++R++ A L P ++L
Sbjct: 116 EPKEEATARARELLAKVGLAGKE------TSYPRR--LSGGQQQRVAIARALAMRPEVIL 167
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233
DEPT+ LD +++ +R+L +Q K+T++ H+ S
Sbjct: 168 FDEPTSALDPELVGEVLNTIRQL-AQEKRTMVIVTHEMS 205
|
Length = 250 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 1e-05
Identities = 25/84 (29%), Positives = 48/84 (57%), Gaps = 7/84 (8%)
Query: 147 LLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LL++LG + S S Q +SGG+ ++++ + L +P +++ DEPT GLD S
Sbjct: 128 LLMDLGFSRD----VMSQSPFQ---MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180
Query: 207 ASKLIRMMRELTSQRKKTVLCTIH 230
+++R+++ L + KT++ H
Sbjct: 181 KRQVMRLLKSLQTDENKTIILVSH 204
|
Length = 286 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 41/144 (28%), Positives = 65/144 (45%), Gaps = 24/144 (16%)
Query: 84 IIDGDIRVNGKPVEGK------FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVK 136
I GD+ V+G V R G ++Q LF P LT E++ F RV+
Sbjct: 53 ITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLF-PHLTALENVMFGP-----LRVR 106
Query: 137 AYQRIA---LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL 193
+ LL ++GL H LSGG+++R++ A L P L+
Sbjct: 107 GASKEEAEKQARELLAKVGLAERAHHYPSE--------LSGGQQQRVAIARALAVKPKLM 158
Query: 194 LCDEPTTGLDSFSASKLIRMMREL 217
L DEPT+ LD +++++M++L
Sbjct: 159 LFDEPTSALDPELRHEVLKVMQDL 182
|
Length = 240 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 1e-05
Identities = 29/81 (35%), Positives = 49/81 (60%), Gaps = 4/81 (4%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + + EL Q+ +T L
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIA 536
Query: 230 HQPSSELIDMFDKIILLADSR 250
H+ S+ I+ D+I+++ D
Sbjct: 537 HRLST--IEKADEILVVEDGE 555
|
Length = 582 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 1e-05
Identities = 38/160 (23%), Positives = 78/160 (48%), Gaps = 31/160 (19%)
Query: 85 IDGDIRVNGKPV-EGK-----FRSACGFMYQHDLFSPSLTVYEHLYFMALL-------KL 131
++G I G+ + + + +R G ++Q P +++Y+++ F + KL
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGVKSKHKL 119
Query: 132 DRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
DR V ++ ++ AL + + EL ++ LSGG+++RL A L +P
Sbjct: 120 DRIVEESLKKAALWDEVKSELNKPGTR--------------LSGGQQQRLCIARALAVEP 165
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
++L DEPT+ LD + ++ +++ EL+ T++ H
Sbjct: 166 EVILLDEPTSALDPIATQRIEKLLEELS--ENYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 22/59 (37%), Positives = 37/59 (62%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L +P +LL DEPT+ LD S +++ +M +L ++ T++ H
Sbjct: 149 LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDL--KKVTTIIIVTH 205
|
Length = 252 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 16/115 (13%)
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS----A 207
L + T +G +Q LSGG+++R++ A LL +P +LL DE T+ LD+ S
Sbjct: 124 SLPDGYDTLVGERG-SQ---LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQ 179
Query: 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
L R M+ +T + H+ S+ I D I +L + + G+ D +A
Sbjct: 180 EALDRAMKG------RTTIVIAHRLST--IRNADLIAVLQNGQVVEQGTHDELMA 226
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.7 bits (111), Expect = 1e-05
Identities = 46/187 (24%), Positives = 80/187 (42%), Gaps = 30/187 (16%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALL 129
++ + + I G I NG + R G ++Q P +++YE++ + L
Sbjct: 54 MNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRL 112
Query: 130 KLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
K +K Q + + L + + R+ S++ LSGG+++R+ A L T
Sbjct: 113 K---GIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG----LSGGQQQRVCIARVLAT 165
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH--QPSSELIDMFDKIILL 246
P ++L DEPT+ LD SA K+ + L + T+L Q +S + D
Sbjct: 166 SPKIILLDEPTSALDPISAGKIEETLLGL--KDDYTMLLVTRSMQQASRISD-------- 215
Query: 247 ADSRTAF 253
RT F
Sbjct: 216 ---RTGF 219
|
Length = 252 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 16/49 (32%), Positives = 30/49 (61%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
SGGE++R++ A + D +LL DEPT LD+ + ++ ++ E ++
Sbjct: 151 SGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARG 199
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+R+ L A LL P +L+ DE T +D + + + + +RE + T+L H+
Sbjct: 126 LSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT--NSTILTIAHR 183
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ +ID +DKI+++
Sbjct: 184 LRT-IID-YDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 2e-05
Identities = 51/203 (25%), Positives = 96/203 (47%), Gaps = 27/203 (13%)
Query: 69 SELIRLFLSQVID----DCIIDG-DI-RVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH 122
S ++RL L+++I+ +IDG DI +++ + R ++Q P +TV ++
Sbjct: 68 STMVRL-LNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHMTVLDN 126
Query: 123 LYF-MALLKL---DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
F M L + +RR KA L ++GL N H+ LSGG R+
Sbjct: 127 TAFGMELAGINAEERREKALDA-------LRQVGLENYAHSYPDE--------LSGGMRQ 171
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238
R+ A L +P +LL DE + LD +++ + +L ++ ++T++ H E +
Sbjct: 172 RVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD-LDEAMR 230
Query: 239 MFDKIILLADSRTAFIGSKDAAL 261
+ D+I ++ + +G+ D L
Sbjct: 231 IGDRIAIMQNGEVVQVGTPDEIL 253
|
Length = 400 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 2e-05
Identities = 25/85 (29%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + D L+ DEPT GLD I + L + KK ++ H
Sbjct: 151 LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHN 210
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+++ + D++I++ + + IGS
Sbjct: 211 -MDQVLRIADEVIVMHEGKVISIGS 234
|
Length = 289 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 2e-05
Identities = 22/58 (37%), Positives = 32/58 (55%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L V+ H
Sbjct: 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTH 207
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L +P +L+ DE T+ LD+ + + +RE+++ R T L H+
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGR--TTLVIAHR 457
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ +ID D+II+L + R G+ + LA
Sbjct: 458 LST-IIDA-DEIIVLDNGRIVERGTHEELLA 486
|
Length = 497 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 2e-05
Identities = 22/76 (28%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L P +L+ DEPT GLD ++++++ + KTV H
Sbjct: 177 LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILD-AKANNKTVFVITHT 235
Query: 232 PSSELIDMFDKIILLA 247
++++ D++I++
Sbjct: 236 -MEHVLEVADEVIVMD 250
|
Length = 320 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 3e-05
Identities = 29/83 (34%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG +++L A EL P LL+ +PT GLD + + + EL K +L
Sbjct: 404 LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLI---- 459
Query: 232 PSSELIDMFDKIILLADSRTAFI 254
S +L D+I+ L+D R A I
Sbjct: 460 -SEDL----DEILELSD-RIAVI 476
|
Length = 501 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.3 bits (109), Expect = 3e-05
Identities = 29/94 (30%), Positives = 53/94 (56%), Gaps = 9/94 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A + +P +LL DEPT+ LD + +K+ ++ EL ++K +++ H
Sbjct: 226 LSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILEL--KKKYSIIIVTHS 283
Query: 231 -----QPSSELIDMFDKIILLA-DSRTAFIGSKD 258
+ S E + + I A +++T FI K+
Sbjct: 284 MAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317
|
Length = 329 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 3e-05
Identities = 26/91 (28%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS GE ++ L+++P LL+ DEP GLD S +L ++ L + L +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASL--HQSGITLVLVLN 193
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
E+ D +LAD A G ++ L
Sbjct: 194 RFDEIPDFVQFAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 3e-05
Identities = 32/113 (28%), Positives = 55/113 (48%), Gaps = 19/113 (16%)
Query: 137 AYQRIALINSL--LIELGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELL--TDPA 191
+ ++ I+ L LI++GL G ++ QK+ LSGGE +R+ A+EL
Sbjct: 58 SRNKLIFIDQLQFLIDVGL--------GYLTLGQKLSTLSGGELQRVKLASELFSEPPGT 109
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP-----SSELIDM 239
L + DEP+TGL ++L+ +++ L TV+ H + +ID
Sbjct: 110 LFILDEPSTGLHQQDINQLLEVIKGLIDL-GNTVILIEHNLDVLSSADWIIDF 161
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I+ +L + L N+ + S+ G ++RL A LL P LL+ DEPT GLD
Sbjct: 105 IDEVLNIVDLTNTGKKKAKQFSL--------GMKQRLGIAIALLNHPKLLILDEPTNGLD 156
Query: 204 SFSASKLIRMMRELTSQ 220
+L ++R Q
Sbjct: 157 PIGIQELRELIRSFPEQ 173
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 22/58 (37%), Positives = 33/58 (56%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
SGG ++RL A L+T P L+ DEPT GLD ++L+ ++R L + V+ H
Sbjct: 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTH 210
|
Length = 258 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 3e-05
Identities = 23/61 (37%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229
+ LSGGE++R+ A ++ PA+LL DEPT LD + ++R+ E ++ TVL
Sbjct: 136 IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF-NRVGVTVLMAT 194
Query: 230 H 230
H
Sbjct: 195 H 195
|
Length = 222 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 27/73 (36%), Positives = 43/73 (58%), Gaps = 6/73 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A L +P +LL DEPT+ LD + +K+ +++EL T++ H
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSY--TIMIVTHN 240
Query: 231 -QPSSELID--MF 240
Q +S + D MF
Sbjct: 241 MQQASRVSDYTMF 253
|
Length = 286 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 44.0 bits (105), Expect = 4e-05
Identities = 25/81 (30%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS GER+ + A L + LL+ DEPT L +L +++R L +Q V+ H+
Sbjct: 83 LSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ-GVAVIFISHR 141
Query: 232 PSSELIDMFDKIILLADSRTA 252
E+ ++ D++ +L D R
Sbjct: 142 L-DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 37/158 (23%), Positives = 76/158 (48%), Gaps = 16/158 (10%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVY 120
S +R F ++ + +C + G++ ++G V R+ G ++Q P ++Y
Sbjct: 45 STFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK-SIY 103
Query: 121 EHLYFMALLKLDRRVKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179
+++ + KL K +++ ++ L +GL R+ S+ LSGG+++R
Sbjct: 104 DNVAYGP--KLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE----LSGGQQQR 157
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
L A + P +LL DEP + LD + + + +++EL
Sbjct: 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQEL 195
|
Length = 251 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 4e-05
Identities = 21/59 (35%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A + +P ++L DEPT+ LD + K+ +M EL ++ T++ H
Sbjct: 146 LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEEL--KKNYTIVIVTH 202
|
Length = 249 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 4e-05
Identities = 36/103 (34%), Positives = 53/103 (51%), Gaps = 12/103 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD--SFSA-SKLIRMMRELTSQRKKTVLCT 228
SGGE+KR LL +P L + DEP +GLD + +++I +RE K+VL
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE----EGKSVLII 160
Query: 229 IHQPSSELIDMF--DKIILLADSRTAFIGSKDAALAFLESQGY 269
H L+D D++ +L D R G K+ AL +E +GY
Sbjct: 161 THYQ--RLLDYIKPDRVHVLYDGRIVKSGDKELALE-IEKKGY 200
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 4e-05
Identities = 48/180 (26%), Positives = 82/180 (45%), Gaps = 37/180 (20%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------DRRVKAY 138
G+ R+N V R G ++Q P L+V E++ F LKL ++RV
Sbjct: 63 GEKRMN--DVPPAERGV-GMVFQSYALYPHLSVAENMSFG--LKLAGAKKEEINQRVNQV 117
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + LL R + LSGG+R+R++ L+ +P++ L DEP
Sbjct: 118 AEVLQLAHLL----------DR-------KPKALSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 199 TTGLDSFSASKLIRMMRELTSQRKK---TVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255
+ LD A+ ++M E++ K+ T++ H E + + DKI++L R A +G
Sbjct: 161 LSNLD---AALRVQMRIEISRLHKRLGRTMIYVTHD-QVEAMTLADKIVVLDAGRVAQVG 216
|
Length = 369 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.3 bits (107), Expect = 4e-05
Identities = 26/70 (37%), Positives = 41/70 (58%), Gaps = 4/70 (5%)
Query: 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207
L + L + R+ SS+++ LSGG+++RL A L PA+LL DEP + LD S
Sbjct: 145 LTKAALWDEVKDRLHSSALS----LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISN 200
Query: 208 SKLIRMMREL 217
+K+ ++ EL
Sbjct: 201 AKIEELITEL 210
|
Length = 268 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 5e-05
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221
LSGGER+RL+ A LL DP +L+ DE T+ LD + +K+ + EL R
Sbjct: 472 LSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
|
Length = 588 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 5e-05
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Query: 159 TRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
+ +G + ++V LSGGER+R A + D LL DEPT+ LD ++ ++
Sbjct: 133 SLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHR 192
Query: 217 LTSQRKKTVLCTIH 230
L+ +R TV+ +H
Sbjct: 193 LSQERGLTVIAVLH 206
|
Length = 265 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 4/85 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+R+ L A LL +L+ DE T +D + + + + +RE TVL H+
Sbjct: 140 LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDC--TVLTIAHR 197
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ +ID D+I++L R S
Sbjct: 198 LDT-IID-SDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 6e-05
Identities = 25/52 (48%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Query: 172 LSGGERKRLSFATELLT---DPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGGE +RL A ELL P L + DEPTTGL + LI +++ LT Q
Sbjct: 810 LSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ 861
|
Length = 1809 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 6e-05
Identities = 24/79 (30%), Positives = 48/79 (60%), Gaps = 4/79 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ +P +L+ DE T+ LD+ S ++ + + + ++TVL H+
Sbjct: 151 LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYD--WPERRTVLVIAHR 208
Query: 232 PSSELIDMFDKIILLADSR 250
S ++ D+I++L R
Sbjct: 209 LS--TVERADQILVLDGGR 225
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 6e-05
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 13/94 (13%)
Query: 151 LGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASK 209
L L+++QH R Q + LS G++KR++ A L+ LL DEPT GLD ++
Sbjct: 121 LTLVDAQHFR------HQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQ 174
Query: 210 LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243
+I ++R + +Q ++ SS ID+ +I
Sbjct: 175 MIAIIRRIVAQGNHVII------SSHDIDLIYEI 202
|
Length = 271 |
| >gnl|CDD|223912 COG0842, COG0842, ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.9 bits (106), Expect = 6e-05
Identities = 41/226 (18%), Positives = 80/226 (35%), Gaps = 14/226 (6%)
Query: 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID 389
L+ F R ++ ++I+ ++ L + S+D
Sbjct: 31 ILSRFLRRLLEFQVLVDASALIIAPILYLIIFGLLFGLREGLSGRLYHW-----SNPSLD 85
Query: 390 LTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDM--LPLFHREYSSGLYSAFQFYLSYI 447
V + +M FS ++S S R S + F +
Sbjct: 86 YLAFIV----PGVILMSV--LFSGIFSFSSALFREREFGTLERLLVSPVSRLFILLGKIV 139
Query: 448 LSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVS 507
+ +I ++ VI + + + L+ +L+ +L+ VA ++ + A S +
Sbjct: 140 PYLVVASLIAGLVLLVIAFLLGVPFLGSLLLLLLLLLLLLLATVALG-LLLSTFAKSQLQ 198
Query: 508 TAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEAL 553
A A L +GVF+ L LP + I Y++ L Y+ +AL
Sbjct: 199 CASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDAL 244
|
Length = 286 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 6e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+++R++ A L +P L+ DEPT GLD +++ + L Q K +L T
Sbjct: 166 LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVT 222
|
Length = 305 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 7e-05
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 14/132 (10%)
Query: 99 KFRSACGFMYQHDLFSPSLTVYEHLYF--MALLKLDRRVKAYQRIALINSLLIELGLMNS 156
R G ++Q P LTV E+L +L L + + L+ L
Sbjct: 79 DLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRL--------- 129
Query: 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
R+ + + LSGG+++R++ A L+ +P +LL DEPT LD ++++ +++E
Sbjct: 130 ---RLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKE 186
Query: 217 LTSQRKKTVLCT 228
L V+ T
Sbjct: 187 LAETGITQVIVT 198
|
Length = 242 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 8e-05
Identities = 31/105 (29%), Positives = 53/105 (50%), Gaps = 9/105 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T + + +SGG+++R++ A LLTD +L+ DE T+ LD+ + K++ + L
Sbjct: 602 QTELSEEGSS----ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL 657
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
KT++ H+ S + DKII+L + GS D L
Sbjct: 658 Q---DKTIIFVAHRLS--VAKQSDKIIVLDHGKIIEQGSHDELLD 697
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 8e-05
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R A L D +L DEP LD + ++++++R L + KT++ +H
Sbjct: 136 LSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHD 195
Query: 232 PSSELIDM----FDKIILLADSRTAFIGSKD 258
I+ D I+ L + + GS D
Sbjct: 196 -----INFASCYSDHIVALKNGKVVKQGSPD 221
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (106), Expect = 8e-05
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+ +R++ A L +P +L+ DEPT GLD +++ M +L ++ T + H
Sbjct: 146 LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHS 205
|
Length = 290 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.2 bits (104), Expect = 9e-05
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A + T+P +LL DEP + LD + ++ +M EL
Sbjct: 150 LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVEL 195
|
Length = 261 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 9e-05
Identities = 33/133 (24%), Positives = 59/133 (44%), Gaps = 16/133 (12%)
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
K +R +A + + L+ GL LSGG ++R+ A L D
Sbjct: 138 KAEREERALEALELV-------GLEGYADKYPNE--------LSGGMQQRVGLARALAND 182
Query: 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249
P +LL DE + LD +++ + EL ++ KKT++ H E + + D+I ++ D
Sbjct: 183 PDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHD-LDEALRIGDRIAIMKDG 241
Query: 250 RTAFIGSKDAALA 262
+G+ + L
Sbjct: 242 EIVQVGTPEEILL 254
|
Length = 386 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (104), Expect = 9e-05
Identities = 40/140 (28%), Positives = 65/140 (46%), Gaps = 5/140 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+ +R++ A L +P +L+ DEPT GLD + +++++ E Q +TV+ H
Sbjct: 145 LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLF-ESIHQSGQTVVLVTHL 203
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA---FLESQGYPCPYGYNPADFLIKSLAVT 288
++ D D + LL G+ FL++ P + AD L K+ AVT
Sbjct: 204 -MDDVADYADYVYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQLQKTGAVT 262
Query: 289 TNDELSSRRRLKRICDEFSV 308
+R L + SV
Sbjct: 263 FEKLPITRAELVTLLTSLSV 282
|
Length = 288 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.4 bits (105), Expect = 9e-05
Identities = 38/176 (21%), Positives = 87/176 (49%), Gaps = 20/176 (11%)
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+R V + I ++ +L ++G+++ + + LSGG+++R++ A L +P
Sbjct: 112 NRAVPRPEMIKIVRDVLADVGMLDYIDS--------EPANLSGGQKQRVAIAGILAVEPK 163
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID---MFDKIILLAD 248
+++ DE T+ LD ++++++R+L + TV+ H ID M D++++L D
Sbjct: 164 IIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHD-----IDEANMADQVLVLDD 218
Query: 249 SRTAFIGSKD---AALAFLESQGYPCPYGYNPADFLIKSLAVTTNDELSSRRRLKR 301
+ GS + + L+ G P+ Y + L + ++ E+++ +L +
Sbjct: 219 GKLLAQGSPVEIFSKVEMLKEIGLDIPFVYKLKNKLKEK-GISVPQEINTEEKLVQ 273
|
Length = 282 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 20/45 (44%), Positives = 29/45 (64%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
SGG R+R+ A LL P LL+ DEPTT LD ++++ ++ EL
Sbjct: 163 SGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNEL 207
|
Length = 330 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 40/154 (25%), Positives = 73/154 (47%), Gaps = 27/154 (17%)
Query: 80 IDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYF---MALLK 130
I++ I G+I+ G+ + G + R G ++Q P +VY+++ + +A +K
Sbjct: 57 IENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGVK 115
Query: 131 ----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+D+RV+ + A I + N+Q SGG+++R+ A L
Sbjct: 116 DKELIDQRVEESLKQAAIWKETKDNLDRNAQ-------------AFSGGQQQRICIARAL 162
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
P ++L DEPT+ LD S+S++ + EL Q
Sbjct: 163 AVRPKVVLLDEPTSALDPISSSEIEETLMELKHQ 196
|
Length = 251 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 35/164 (21%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 76 LSQVIDDCIIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPS---LTVYEHLYFM 126
++ +++ I+G++ GK + + R G ++Q +P+ +++Y+++ +
Sbjct: 56 MNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQ----TPNPFLMSIYDNISYG 111
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+ + K I + L + L N ++ +++++ LSGG+++RL A L
Sbjct: 112 PKIHGTKDKKKLDEI--VEQSLKKSALWNEVKDKLNTNALS----LSGGQQQRLCIARTL 165
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+P ++L DEPT+ LD S K+ ++ L + T++ H
Sbjct: 166 AIEPNVILMDEPTSALDPISTGKIEELIINL--KESYTIIIVTH 207
|
Length = 254 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 20/49 (40%), Positives = 27/49 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A + P +LL DEP + LD S +L M EL
Sbjct: 164 LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKN 212
|
Length = 267 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (103), Expect = 1e-04
Identities = 19/48 (39%), Positives = 31/48 (64%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
+ LSGG+++RL A L +P ++L DEP + LD S ++ +M+EL
Sbjct: 146 LALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQEL 193
|
Length = 251 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 1e-04
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+R+R A L + A++L DEPTT LD L+ ++ EL ++ T+ +H
Sbjct: 144 LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLH 202
|
Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 1e-04
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGER+R++ LL P +LL DEPT LD
Sbjct: 163 KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLD 195
|
Length = 556 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 2e-04
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 9/78 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R++ A L + L L DEP+ LD +K+IR E +KT L
Sbjct: 456 LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIE---NNEKTALVV 512
Query: 229 IHQPSSELIDMF-DKIIL 245
H +ID D++I+
Sbjct: 513 DHDIY--MIDYVSDRLIV 528
|
Length = 591 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 33/154 (21%), Positives = 59/154 (38%), Gaps = 28/154 (18%)
Query: 87 GDIRVNGKPVEGKFRSACGFMYQHDLF--------SPSLTVYEHLYFMALLKLDRRVKAY 138
G++ G+P+ Y DL LT E+L F R+
Sbjct: 56 GEVLWQGEPI-----RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQ------RLHGP 104
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ L ++GL + + LS G+++R++ A LT L + DEP
Sbjct: 105 GDDEALWEALAQVGLAGFEDVPVR--------QLSAGQQRRVALARLWLTRAPLWILDEP 156
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
T +D ++L ++ + ++ V+ T HQ
Sbjct: 157 FTAIDKQGVARLEALLAQHA-EQGGMVILTTHQD 189
|
Length = 204 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/85 (28%), Positives = 46/85 (54%), Gaps = 1/85 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG R+R+ A L PA+L+ DEPTT LD ++++++++ L + V+ H
Sbjct: 169 LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHD 228
Query: 232 PSSELIDMFDKIILLADSRTAFIGS 256
+ ++ D+++++ GS
Sbjct: 229 -MGVVAEIADRVLVMYQGEAVETGS 252
|
Length = 623 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A L P +LL DEP GLD ++ K+ +++ L + + T++ H
Sbjct: 151 LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSH 209
|
Length = 261 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 17/44 (38%), Positives = 30/44 (68%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216
SGGE++R++ A + D +LL DEPT LD+ + + ++ ++RE
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 2e-04
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A L +P ++L DEPT+ LD S K+ +++EL
Sbjct: 168 LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQEL 213
|
Length = 271 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 27/93 (29%), Positives = 47/93 (50%), Gaps = 8/93 (8%)
Query: 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MREL 217
T IG I LSGG+++R+S A + +D + L D+P + +D+ + + L
Sbjct: 119 TEIGEKGIN----LSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGL 174
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
K +L T HQ +L+ D+I++L + R
Sbjct: 175 LLNNKTRILVT-HQL--QLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 30/98 (30%), Positives = 45/98 (45%), Gaps = 4/98 (4%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQ 231
SGGE+KR L +P L + DE +GLD A K++ + L + ++ T +Q
Sbjct: 146 SGGEKKRNEILQMALLEPKLAILDEIDSGLD-IDALKIVAEGINRLREPDRSFLIITHYQ 204
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGY 269
I D + +L D R G + A LE +GY
Sbjct: 205 RLLNYIKP-DYVHVLLDGRIVKSGDVELAKE-LEEKGY 240
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 44/164 (26%), Positives = 76/164 (46%), Gaps = 33/164 (20%)
Query: 71 LIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFM--YQHDL----------FSPSLT 118
L+RL SQ G+IR +G+ ++G R M + + SP +T
Sbjct: 333 LLRLIPSQ--------GEIRFDGQDIDGLSRKE---MRPLRRRMQVVFQDPYGSLSPRMT 381
Query: 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178
V + L + ++ A +R + L E+GL + R SGG+R+
Sbjct: 382 V-GQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHE-------FSGGQRQ 433
Query: 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
R++ A L+ P L+L DEPT+ LD ++++ ++R+L Q+K
Sbjct: 434 RIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDL--QQK 475
|
Length = 534 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 20/38 (52%), Positives = 23/38 (60%), Gaps = 2/38 (5%)
Query: 168 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK V LSGGER R+ A L + +LL DEPT LD
Sbjct: 438 QKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD 475
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 7/62 (11%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCT 228
LSGGE +R++ A LL D + DEP++ LD +A+++I REL ++ K V+
Sbjct: 214 LSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVI---REL-AEDGKYVIVV 269
Query: 229 IH 230
H
Sbjct: 270 EH 271
|
Length = 591 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (100), Expect = 3e-04
Identities = 35/133 (26%), Positives = 61/133 (45%), Gaps = 18/133 (13%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A + P +++ DE T+ LD +++R++ E+ + + TVL H
Sbjct: 141 LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHD 200
Query: 232 ----PSSE--LIDMFDKIILLADSRTAFIGSKDAA------------LAFLESQGYPCPY 273
SS+ L+ +II A F S+D + L G+ P
Sbjct: 201 LDEAASSDRILVMKAGEIIKEAAPSELFATSEDMVEIGLDVPFSSNLMKDLRKNGFDLPE 260
Query: 274 GYNPADFLIKSLA 286
Y D L++ LA
Sbjct: 261 KYLSEDELVELLA 273
|
Length = 277 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 3e-04
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
VLSGGE++RL+FA LL P + DE T+ LD + +L ++++E TV+ H
Sbjct: 515 VLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPD--ATVISVGH 572
Query: 231 QPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+P+ L + + + L D A
Sbjct: 573 RPT--LWNFHSRQLELLDDAGGQNLKPPALPT 602
|
Length = 604 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 3e-04
Identities = 30/88 (34%), Positives = 40/88 (45%), Gaps = 16/88 (18%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS---FSASKLI-RMMRELTSQRKKTVLC 227
LSGGE +R++ A L D L L DEP+ LD + +K I R+ E R+ T L
Sbjct: 454 LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEE----REATALV 509
Query: 228 TIHQPSSELIDMFDKIILLADSRTAFIG 255
H I M D ++D F G
Sbjct: 510 VDHD-----IYMID---YISDRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 33/137 (24%), Positives = 64/137 (46%), Gaps = 13/137 (9%)
Query: 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
I D I +N + R G ++Q P +++YE++ + +++ ++ +
Sbjct: 76 IYDPRININ------RLRRQIGMVFQRPNPFP-MSIYENVAYG--VRISAKLPQADLDEI 126
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ S L L ++ S++ LSGG+++RL A L P +LL DEP + LD
Sbjct: 127 VESALKGAALWQEVKDKLNKSALG----LSGGQQQRLCIARALAIKPKVLLMDEPCSALD 182
Query: 204 SFSASKLIRMMRELTSQ 220
+ K+ ++ L S+
Sbjct: 183 PIATMKVEELIHSLRSE 199
|
Length = 259 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 18/49 (36%), Positives = 28/49 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A + P +LL DEP + LD S ++ ++ EL
Sbjct: 157 LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQD 205
|
Length = 260 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (102), Expect = 3e-04
Identities = 18/32 (56%), Positives = 22/32 (68%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
LSGGE++R++ LLT P LLL DEP LD
Sbjct: 129 LSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
|
Length = 352 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++RL A + +P ++L DEP + LD S K+ M EL
Sbjct: 155 LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHEL 200
|
Length = 269 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 20/36 (55%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK LSGGE +R+ A LL P LL+ DEPT G+D
Sbjct: 119 QK--LSGGETQRVLLARALLNRPQLLVLDEPTQGVD 152
|
Length = 251 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.0 bits (102), Expect = 4e-04
Identities = 26/75 (34%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+RL A L+ +P++L+ DE T+ LD + + +R +R T + H+
Sbjct: 616 LSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLR----RRGCTCIIVAHR 671
Query: 232 PSSELIDMFDKIILL 246
S+ I D+II+L
Sbjct: 672 LST--IRDCDEIIVL 684
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 4e-04
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++R++ A L +P++++ DE T+ LD + L+ ++R++ S+ T++ H
Sbjct: 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITH 201
|
Length = 269 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LSGG+++RL A L +P +LL DEP + LD + K+ ++ EL ++
Sbjct: 150 LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKAR 198
|
Length = 253 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 5e-04
Identities = 19/46 (41%), Positives = 33/46 (71%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
LSGG+++R++ A L+ +P +LL DEPT LD ++++ ++REL
Sbjct: 142 LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIREL 187
|
Length = 242 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223
LSGG +R+ A + P LL+ DEPTT LD +++I ++ EL Q+K+
Sbjct: 154 LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLEL--QQKE 203
|
Length = 326 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 36/136 (26%), Positives = 63/136 (46%), Gaps = 17/136 (12%)
Query: 114 SPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170
+P+L TVY++L F + R + ++ L L ++ I + +I +
Sbjct: 89 TPTLFGDTVYDNLIFPWQI----RNQQPDPAIFLDDL-ERFALPDT----ILTKNIAE-- 137
Query: 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGGE++R+S L P +LL DE T+ LD + + ++ ++ VL H
Sbjct: 138 -LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTH 196
Query: 231 QPSSELIDMFDKIILL 246
+ I+ DK+I L
Sbjct: 197 --DKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 7e-04
Identities = 42/126 (33%), Positives = 70/126 (55%), Gaps = 22/126 (17%)
Query: 87 GDIRVNGKPV----EGKFRSA---CGFMYQH-DLFSPSLTVYEHLYFMAL-LKLDRRVKA 137
G + V+G+ + E + R A G ++QH +L S S TV++++ AL L+L KA
Sbjct: 60 GRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLS-SRTVFDNV---ALPLELAGTPKA 115
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A + LL +GL + + R + LSGG+++R++ A L ++P +LLCDE
Sbjct: 116 -EIKARVTELLELVGLSD-KADRYPAQ-------LSGGQKQRVAIARALASNPKVLLCDE 166
Query: 198 PTTGLD 203
T+ LD
Sbjct: 167 ATSALD 172
|
Length = 343 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 16/149 (10%)
Query: 80 IDDCIIDGDIRVNGK--------PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131
ID C + G I ++G+ VE R+ G ++Q P ++YE++ + +
Sbjct: 72 IDGCRVTGKITLDGEDIYDPRLDVVE--LRARVGMVFQKPNPFPK-SIYENVAYGPRIHG 128
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
R KA + SL + GL R+ LSGG+++RL A + P
Sbjct: 129 LARSKAELDEIVETSLR-KAGLWEEVKDRLHEPGTG----LSGGQQQRLCIARAIAVSPE 183
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
++L DEP + LD + +K+ ++ EL
Sbjct: 184 VILMDEPCSALDPIATAKVEELIDELRQN 212
|
Length = 267 |
| >gnl|CDD|221721 pfam12698, ABC2_membrane_3, ABC-2 family transporter protein | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 25/116 (21%), Positives = 48/116 (41%), Gaps = 6/116 (5%)
Query: 429 HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILY-WISGLRNSLSVFLMAVLICIL 487
R SG+ S ++ L IL L +IQ ++ ++L+ N L + L+ +L +
Sbjct: 127 ERLLVSGV-SPLKYLLGKILGDLLVGLIQLLIILLLLFGLGIPFGNLLLLLLLFLLYGLA 185
Query: 488 IINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYL 543
I + G + F + A+ + L G + L ++P + WI +
Sbjct: 186 YI----ALGALLGSLFKNSEAAILVISILILLLSGFFGGLFPLPNMPSFLQWIFSI 237
|
This family is related to the ABC-2 membrane transporter family pfam01061. Length = 278 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 7e-04
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCT 228
LSGG+ +R++ A L +P +L+ DEPT GLD +L+ + ++L VL T
Sbjct: 146 LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVT 202
|
Length = 280 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 7e-04
Identities = 17/59 (28%), Positives = 33/59 (55%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+SGG +R+ A LL + ++ DEPTT LD + ++++ ++ + +R +L H
Sbjct: 141 MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTH 199
|
Length = 254 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 7e-04
Identities = 38/136 (27%), Positives = 58/136 (42%), Gaps = 31/136 (22%)
Query: 118 TVYEHLYFMALLKLDRRVKAYQRIALINSL--LIELGLMNSQHTRIGSSSITQKVVLSGG 175
TV E ++ LL + R+ + L L+++GL + + S+ T LSGG
Sbjct: 97 TVTEIYDYLRLL--------FARVGIRERLGFLVDVGL---GYLTLSRSAPT----LSGG 141
Query: 176 ERKRLSFATEL---LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232
E +R+ AT++ LT L + DEP+ GL +LI ++ L TVL H
Sbjct: 142 EAQRIRLATQIGSGLTG-VLYVLDEPSIGLHPRDNDRLIETLKRLRDL-GNTVLVVEHDE 199
Query: 233 SSELIDMFDKIILLAD 248
I AD
Sbjct: 200 ---------DTIRAAD 206
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 8e-04
Identities = 41/152 (26%), Positives = 60/152 (39%), Gaps = 19/152 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-- 143
DGD + P R+ G +Q +LTV E+L L D+ V A L
Sbjct: 65 DGDTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENL--ELALNRDKSVFASLFARLRA 122
Query: 144 -----INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
I+ LL +GL + + LS G+++ L L DP LLL DEP
Sbjct: 123 EERRRIDELLATIGLGDERDRLAAL--------LSHGQKQWLEIGMLLAQDPKLLLLDEP 174
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
G+ K +++ L K ++L H
Sbjct: 175 VAGMTDAETEKTAELLKSL--AGKHSILVVEH 204
|
Length = 249 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 8e-04
Identities = 19/79 (24%), Positives = 47/79 (59%), Gaps = 2/79 (2%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG +++ A LLT+P +L+ DEPT G+D + ++ +++ +L + ++ +
Sbjct: 404 LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSEL 463
Query: 232 PSSELIDMFDKIILLADSR 250
E++ + D+++++ + +
Sbjct: 464 A--EVLGLSDRVLVIGEGK 480
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 42.0 bits (100), Expect = 9e-04
Identities = 21/38 (55%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 168 QKVV--LSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
QK V LSGGER RL A L +LL DEPT LD
Sbjct: 440 QKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD 477
|
Length = 556 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 9e-04
Identities = 42/177 (23%), Positives = 72/177 (40%), Gaps = 32/177 (18%)
Query: 87 GDIRVNGKPVEGKFRSA-------CGFMYQHDLFSPSLTVYEHLYFMAL---LKLDRRVK 136
G I ++G+ + +F S +YQ P +TV E+LY L + R
Sbjct: 59 GSILIDGQEM--RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRL 116
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
L LG+ T + SI G+R+ + A L + ++ D
Sbjct: 117 LNYEAREQ---LEHLGVDIDPDTPLKYLSI--------GQRQMVEIAKALARNARVIAFD 165
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253
EPT+ L + +L R++REL ++ + +L H+ ++I L D+ T F
Sbjct: 166 EPTSSLSAREIEQLFRVIRELRAE-GRVILYVSHR--------MEEIFALCDAITVF 213
|
Length = 501 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 0.001
Identities = 49/180 (27%), Positives = 84/180 (46%), Gaps = 30/180 (16%)
Query: 87 GDIRVNGKPVEGKFRS-----ACGFMY-----QHDLFSPSLTVYEHLYFMALLKLDR--- 133
G + ++G V RS A G +Y + D ++V E++ AL R
Sbjct: 307 GYVTLDGHEV--VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGG 364
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV-VLSGGERKRLSFATELLTDPAL 192
+K ++ + L N I + S+ Q + +LSGG +++++ A L+T P +
Sbjct: 365 SLKHADEQQAVSDFI---RLFN-----IKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKV 416
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS--ELIDMFDKIILLADSR 250
L+ DEPT G+D A K I +L +Q K L I S E++ M D+I+++ + R
Sbjct: 417 LILDEPTRGVD-VGAKKEI---YQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGR 472
|
Length = 501 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.001
Identities = 36/98 (36%), Positives = 49/98 (50%), Gaps = 13/98 (13%)
Query: 107 MYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSS 165
M+Q P +TV +++ F LK D+ KA I S + E LGL++ Q
Sbjct: 96 MFQSYALFPHMTVEQNIAFG--LKQDKLPKAE-----IASRVNEMLGLVHMQ--EFAKRK 146
Query: 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
Q LSGG+R+R++ A L P LLL DEP LD
Sbjct: 147 PHQ---LSGGQRQRVALARSLAKRPKLLLLDEPMGALD 181
|
Length = 377 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.001
Identities = 36/149 (24%), Positives = 68/149 (45%), Gaps = 12/149 (8%)
Query: 78 QVIDDCIIDGDIRVNGKPVEGK------FRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131
+VI ++G++ ++G+ + G R G ++Q P++++ +++ +A LKL
Sbjct: 55 EVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNV--VAGLKL 112
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+ L+ L L N R+ LSGG+++RL A + +P
Sbjct: 113 NGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGG----LSGGQQQRLCIARAIAVEPD 168
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
+LL DEP + LD S + ++ EL
Sbjct: 169 VLLMDEPCSALDPISTLAIEDLINELKQD 197
|
Length = 258 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG+++RL A + P ++L DEP + LD S +K+ ++ +L + T++ H
Sbjct: 147 LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKL--KEDYTIVIVTH 203
|
Length = 250 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH- 230
LSGG+++RL A + P +LL DEP + LD S ++ + EL Q T++ H
Sbjct: 162 LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQY--TIIMVTHN 219
Query: 231 -QPSSELID 238
Q +S + D
Sbjct: 220 MQQASRVAD 228
|
Length = 274 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 0.001
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
Y + + L IE +++ + LSGGE +R++ A L D + L D
Sbjct: 93 PYFKTEIAKPLQIE-QILDREVPE-----------LSGGELQRVAIAACLSKDADIYLLD 140
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
EP+ LD +++R +KT H
Sbjct: 141 EPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/84 (32%), Positives = 38/84 (45%), Gaps = 13/84 (15%)
Query: 172 LSGGERKRLSFATEL-LTD--------PALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
LSGGER S A L L+D L L DEP LD KL ++ EL S +
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFL-DEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 223 KTVLCTIHQPSSELIDMFDKIILL 246
+ ++ + + EL + D I +
Sbjct: 875 QIIIISHVE---ELKERADVRIRV 895
|
Length = 908 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.001
Identities = 37/146 (25%), Positives = 66/146 (45%), Gaps = 14/146 (9%)
Query: 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176
+TV E+L M +R + +RI + L L + R G+ +SGGE
Sbjct: 95 MTVEENLA-MGGFFAERD-QFQERIKWVYELFPRL--HERRIQRAGT--------MSGGE 142
Query: 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236
++ L+ L++ P LLL DEP+ GL ++ + +L Q L + Q +++
Sbjct: 143 QQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFL--VEQNANQA 200
Query: 237 IDMFDKIILLADSRTAFIGSKDAALA 262
+ + D+ +L + + DA LA
Sbjct: 201 LKLADRGYVLENGHVVLEDTGDALLA 226
|
Length = 237 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 16/50 (32%), Positives = 34/50 (68%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222
SGG+R+R++ A L+ P+L++ DEPT+ LD ++++ +++ L + +
Sbjct: 427 SGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQ 476
|
Length = 529 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
LSGG ++R+ A T+ +LL DEP + LD ++L + EL S+ KKT++ H
Sbjct: 165 LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSH 223
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 30/74 (40%), Positives = 35/74 (47%), Gaps = 8/74 (10%)
Query: 130 KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189
KLD + A+ + SLL LG N Q R S SGG R RL+ A L+
Sbjct: 116 KLDA-IDAWTIRSRAASLLHGLGFSNEQLERPVSD-------FSGGWRMRLNLAQALICR 167
Query: 190 PALLLCDEPTTGLD 203
LLL DEPT LD
Sbjct: 168 SDLLLLDEPTNHLD 181
|
Length = 638 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
L+ GE +++ A L P LL+ DEPT ++ + +++ R++ L T+L H
Sbjct: 159 LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
|
Length = 330 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 24/75 (32%), Positives = 46/75 (61%), Gaps = 6/75 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+++R++ A L+ P +L+ DE T+ LD+ ++++E S+ +TVL H+
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECE----QLLQESRSRASRTVLLIAHR 673
Query: 232 PSSELIDMFDKIILL 246
S ++ D+I++L
Sbjct: 674 LS--TVERADQILVL 686
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.002
Identities = 36/130 (27%), Positives = 56/130 (43%), Gaps = 18/130 (13%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCT 228
+ LSGG+R R+S A + D L L D P T LD + ++ + +L S + + ++ +
Sbjct: 547 ITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTS 606
Query: 229 IHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT 288
E + DKI+LL + F G+ F E Q DF L +
Sbjct: 607 ----KLEHLKKADKILLLHEGVCYFYGT------FSELQA-------KRPDFSSLLLGLE 649
Query: 289 TNDELSSRRR 298
D S+ RR
Sbjct: 650 AFDNFSAERR 659
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 44/182 (24%), Positives = 79/182 (43%), Gaps = 19/182 (10%)
Query: 86 DGDIRVNGKPVEGKF-----RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR 140
DG+I +G P++ R+ ++Q P L+V E+++ + L AY
Sbjct: 57 DGEIYWSGSPLKASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNA 116
Query: 141 IAL-INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ L +LL EL L TR GG+++ + A L LL+ DEP+
Sbjct: 117 MYLRAKNLLRELQLDADNVTRPVGD-------YGGGQQQLVEIAKALNKQARLLILDEPS 169
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ L L+ ++R+L + V C I +E+ + D I ++ D + + +KD
Sbjct: 170 SSLTEKETEILLDIIRDL---KAHGVACVYISHKLNEVKAVCDTICVIRDGQ--HVATKD 224
Query: 259 AA 260
+
Sbjct: 225 MS 226
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 31/90 (34%), Positives = 49/90 (54%), Gaps = 11/90 (12%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTS-QRK---KTVL 226
LSGG+++R++ A ++ P +LL DE + LD KL + M+ EL + QRK V
Sbjct: 145 LSGGQQQRVAIARAVVNKPKVLLLDESLSALD----YKLRKQMQNELKALQRKLGITFVF 200
Query: 227 CTIHQPSSELIDMFDKIILLADSRTAFIGS 256
T Q E + M D+I+++ D R G+
Sbjct: 201 VTHDQ--EEALTMSDRIVVMRDGRIEQDGT 228
|
Length = 375 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.3 bits (95), Expect = 0.003
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 162 GSSSITQKV-VLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
I + V VLSGGE+ R+ F ++ P +L+ DEPT +D
Sbjct: 428 SQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMD 470
|
Length = 530 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.003
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 31/149 (20%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G I+ G+P+E + R ++ Q ++ V+++L L + +
Sbjct: 50 GSIQFAGQPLEAWSAAELARHR---AYLSQQQTPPFAMPVFQYL----TLHQPDKTRTEA 102
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE--RKRLSFATELLTDPA------ 191
+ +N + LGL + S+ Q LSGGE R RL+ A L P
Sbjct: 103 VASALNEVAEALGLDDKLGR-----SVNQ---LSGGEWQRVRLA-AVVLQVWPDINPAGQ 153
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220
LLL DEP LD + L R++ EL Q
Sbjct: 154 LLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
|
Length = 248 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.003
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LS G+++R A L P +LL DE LD +A ++ R + EL + T++ H+
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHR 567
Query: 232 PSSELIDMF--DKIILLA 247
P E+ + D +IL+
Sbjct: 568 P--EVGNALRPDTLILVG 583
|
Length = 593 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 0.003
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 9/104 (8%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG ++++ A L P LL+ DEPT G+D + + + +++R + +Q + I
Sbjct: 404 LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLF--ISS 461
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDA-------ALAFLESQG 268
E+ M D+++++ + + A LAF E Q
Sbjct: 462 DLEEIEQMADRVLVMHQGEISGALTGAAINVDTIMRLAFGEHQA 505
|
Length = 510 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.003
Identities = 19/43 (44%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLD-SFSASKLIRMM 214
SGG+R+R++ A L+ DP +++ DEP + LD S A L MM
Sbjct: 156 SGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMM 198
|
Length = 327 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.004
Identities = 36/153 (23%), Positives = 65/153 (42%), Gaps = 24/153 (15%)
Query: 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRV---------KAYQRIALINSLLIELGLMN 155
G +YQ LTV E+LY L ++V + R A+ +L+ +GL
Sbjct: 83 GIIYQELSVIDELTVLENLYIGRHLT--KKVCGVNIIDWREMRVRAAM---MLLRVGLKV 137
Query: 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR 215
++ + SI+ K + L A L+ D +++ DEPT+ L + L +M
Sbjct: 138 DLDEKVANLSISHK--------QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMN 189
Query: 216 ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+L + V I +E+ + D+ ++ D
Sbjct: 190 QLRKEGTAIVY--ISHKLAEIRRICDRYTVMKD 220
|
Length = 510 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.004
Identities = 23/64 (35%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 160 RIGSSSITQKVVLSGGERKRLSFATELL---TDPALLLCDEPTTGLDSFSASKLIRMMRE 216
++G + T LSGGE +R+ A EL T L + DEPTTGL KL+ ++
Sbjct: 823 KLGQPATT----LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHR 878
Query: 217 LTSQ 220
L +
Sbjct: 879 LVDK 882
|
Length = 943 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| KOG0061|consensus | 613 | 100.0 | ||
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0065|consensus | 1391 | 100.0 | ||
| KOG0065|consensus | 1391 | 100.0 | ||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| KOG0057|consensus | 591 | 100.0 | ||
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| KOG0059|consensus | 885 | 100.0 | ||
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.98 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.98 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.98 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.98 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.97 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.97 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.97 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.97 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.97 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.97 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.97 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.97 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.97 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.97 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.96 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.96 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.96 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.95 | |
| KOG0054|consensus | 1381 | 99.95 | ||
| KOG0054|consensus | 1381 | 99.95 | ||
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.94 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.94 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.94 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.94 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.92 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.92 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.92 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.92 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.91 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.91 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.9 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.9 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.89 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.88 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.88 | |
| PF01061 | 210 | ABC2_membrane: ABC-2 type transporter; InterPro: I | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| KOG0927|consensus | 614 | 99.87 | ||
| KOG0927|consensus | 614 | 99.87 | ||
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.86 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.84 | |
| KOG2355|consensus | 291 | 99.83 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.83 | |
| KOG0062|consensus | 582 | 99.82 | ||
| KOG0062|consensus | 582 | 99.81 | ||
| KOG0060|consensus | 659 | 99.8 | ||
| KOG0066|consensus | 807 | 99.79 | ||
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.78 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.77 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.77 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.77 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.75 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.73 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.7 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.69 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.69 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.69 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.68 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.65 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.62 | |
| KOG0064|consensus | 728 | 99.61 | ||
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.57 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.57 | |
| KOG0063|consensus | 592 | 99.53 | ||
| KOG0066|consensus | 807 | 99.52 | ||
| TIGR01247 | 236 | drrB daunorubicin resistance ABC transporter membr | 99.52 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.49 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.48 | |
| TIGR03062 | 208 | pip_yhgE_Cterm YhgE/Pip C-terminal domain. This fa | 99.44 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.43 | |
| TIGR01291 | 253 | nodJ ABC-2 type transporter, NodJ family. Nearly a | 99.39 | |
| TIGR00025 | 232 | Mtu_efflux ABC transporter efflux protein, DrrB fa | 99.37 | |
| TIGR03861 | 253 | phenyl_ABC_PedC alcohol ABC transporter, permease | 99.36 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.36 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.32 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.29 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.28 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.27 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.26 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.21 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.2 | |
| KOG0063|consensus | 592 | 99.2 | ||
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.19 | |
| PRK15066 | 257 | inner membrane transport permease; Provisional | 99.19 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.16 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.12 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.11 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.07 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.06 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.04 | |
| PRK13695 | 174 | putative NTPase; Provisional | 98.98 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 98.97 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 98.96 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 98.92 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 98.9 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 98.89 | |
| COG0842 | 286 | ABC-type multidrug transport system, permease comp | 98.89 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 98.86 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 98.85 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 98.8 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 98.79 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 98.77 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 98.77 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 98.73 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 98.69 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 98.67 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 98.67 | |
| TIGR01248 | 152 | drrC daunorubicin resistance protein C. The model | 98.65 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 98.64 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 98.56 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 98.54 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 98.48 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 98.48 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 98.44 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.44 | |
| TIGR03518 | 240 | ABC_perm_GldF gliding motility-associated ABC tran | 98.38 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.29 | |
| COG1682 | 263 | TagG ABC-type polysaccharide/polyol phosphate expo | 98.26 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 98.26 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.2 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 98.2 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 98.17 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.1 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.07 | |
| PRK15176 | 264 | Vi polysaccharide export inner membrane protein Ve | 98.07 | |
| PF12679 | 277 | ABC2_membrane_2: ABC-2 family transporter protein | 98.05 | |
| PF12698 | 344 | ABC2_membrane_3: ABC-2 family transporter protein; | 97.99 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 97.98 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 97.98 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.93 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 97.9 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 97.89 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 97.88 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 97.82 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 97.73 | |
| PF06422 | 103 | PDR_CDR: CDR ABC transporter; InterPro: IPR010929 | 97.7 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 97.63 | |
| cd01122 | 271 | GP4d_helicase GP4d_helicase is a homohexameric 5'- | 97.52 | |
| TIGR00416 | 454 | sms DNA repair protein RadA. The gene protuct code | 97.51 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 97.47 | |
| PF09818 | 448 | ABC_ATPase: Predicted ATPase of the ABC class; Int | 97.46 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.45 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 97.36 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 97.36 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 97.32 | |
| PRK13764 | 602 | ATPase; Provisional | 97.31 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 97.3 | |
| COG1277 | 278 | NosY ABC-type transport system involved in multi-c | 97.26 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 97.24 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 97.22 |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-105 Score=909.57 Aligned_cols=578 Identities=39% Similarity=0.705 Sum_probs=518.3
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
|++++|+++|+++ ++|+.++++|++ ||||||||++|+|+.+++...+|+|.+||++++. .+++.+|||+
T Consensus 36 ~~~~iL~~vs~~i-----~~Ge~~aI~G~s-----GsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~~~~~~i~yv~ 105 (617)
T TIGR00955 36 PRKHLLKNVSGVA-----KPGELLAVMGSS-----GAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQ 105 (617)
T ss_pred CccccccCCEEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHHHHhhhceeec
Confidence 4678999999999 677778888776 8999999999999998754468999999999864 5788999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|++.+++.+||+|||.|++.++.+...++++++++++++++.+||.+++|+.+|+ +..++||||||||||+||++|+.
T Consensus 106 Q~~~~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~--~~~~~~LSgGqrkRvsia~aL~~ 183 (617)
T TIGR00955 106 QDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGV--PGRVKGLSGGERKRLAFASELLT 183 (617)
T ss_pred cccccCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCC--CCCCCCcCcchhhHHHHHHHHHc
Confidence 9999999999999999999888765556667778899999999999999999997 44467899999999999999999
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHHhCC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLESQG 268 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~~~g 268 (622)
+|++++|||||+|||+.++.++++.|+++++ .|+|||+++|||+.++.++||++++|++|++++.|+++++.+||++.|
T Consensus 184 ~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~-~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~~~f~~~g 262 (617)
T TIGR00955 184 DPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQ-KGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVPFFSDLG 262 (617)
T ss_pred CCCEEEeeCCCcchhHHHHHHHHHHHHHHHh-CCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHHHHHHHcC
Confidence 9999999999999999999999999999997 699999999999778999999999999999999999999999999999
Q ss_pred CCCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCC--ccccccCCCCcCCChhHH
Q psy2519 269 YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTY--DFLADFNSRKIKKPFWFT 346 (622)
Q Consensus 269 ~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 346 (622)
++||++.||+|+++++++.+++.+.+..+..+++.+.|+.++...+.....+......+. .........++..+ |++
T Consensus 263 ~~~p~~~n~ad~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 341 (617)
T TIGR00955 263 HPCPENYNPADFYVQVLAVIPGSENESRERIEKICDSFAVSDIGRDMLVNTNLWSGKAGGLVKDSENMEGIGYNAS-WWT 341 (617)
T ss_pred CCCCCCCChHHHHHHHhhcCcccccchHHHHHHHHHHHhcchhhHHHHHHhhhhhccccccccccccccccccCCC-HHH
Confidence 999999999999999987655444444556677888888876665554433111000000 00001122345677 999
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh
Q psy2519 347 IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLP 426 (622)
Q Consensus 347 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~ 426 (622)
|+.+|++|++++.+|||.++..|+++.+++|+++|++|+++ ++++.++++|.|++|+++++++|.+++++++.|+.||+
T Consensus 342 q~~~l~~R~~~~~~R~~~~~~~~~~~~i~~~li~G~~f~~~-~~~~~~~~~~~g~lf~~~~~~~f~~~~~~~~~f~~er~ 420 (617)
T TIGR00955 342 QFYALLKRSWLSVLRDPLLLKVRLIQTMMTAILIGLIYLGQ-GLTQKGVQNINGALFLFLTNMTFQNVFPVINVFTAELP 420 (617)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 89999999999999999999999998899999999999
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2519 427 LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSV 506 (622)
Q Consensus 427 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~ 506 (622)
+|.||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+|+++++.+||+|++++++..+++.++|+++++++|+.
T Consensus 421 v~~rE~~~~~Y~~~~y~la~~l~~lp~~~~~~~if~~i~Y~~~gl~~~~~~f~~f~l~~~l~~~~~~s~~~~i~~~~~~~ 500 (617)
T TIGR00955 421 VFLRETRSGLYRVSAYFLAKTIAELPLFIILPALFTSITYWMIGLRSGATHFLTFLFLVTLVANVATSFGYLISCAFSST 500 (617)
T ss_pred HHHHhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhhheeccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCC-CCCCCCccChHHHHhhc
Q psy2519 507 STAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFD-NPDLPCLEDGAQVINNM 585 (622)
Q Consensus 507 ~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~-~~~~~c~~~g~~~L~~~ 585 (622)
.+|+.+++++++++++|+||+++.++||+||+|++|+||++||+||++.|||.+..+.+|.+ +....|+.+|+++|+.+
T Consensus 501 ~~a~~~~~~~~~~~~lf~G~~i~~~~ip~~~~W~~~isp~~ya~~al~~nef~~~~~~~c~~~~~~~~c~~~g~~~l~~~ 580 (617)
T TIGR00955 501 SMALTVGPPFVIPFLLFGGFFINSDSIPVYFKWLSYLSWFRYGNEGLLINQWSDVDNIECTSANTTGPCPSSGEVILETL 580 (617)
T ss_pred HHHHHHHHHHHHHHHHHhhcccChhhccHHHHHHHHcCHHHHHHHHHHHHHhCCCccccccCcCcCCCCCcChHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999987668976 33346999999999999
Q ss_pred CCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 586 NFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 586 ~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
|++.++.|.++++|++++++|++++|++|+++.|++|
T Consensus 581 g~~~~~~~~~~~il~~~~~~~~~l~~~~L~~~~~~~~ 617 (617)
T TIGR00955 581 SFRNADLYLDLIGLVILIFFFRLLAYFALRIRIRRKR 617 (617)
T ss_pred CCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999887
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-105 Score=897.65 Aligned_cols=585 Identities=33% Similarity=0.578 Sum_probs=516.7
Q ss_pred cCCcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 15 KNNEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
+...++++++.+.... .+++|++|+..+ ++|+-.+++|+ ||||||||||+|+|+..++...+|+|++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~-----~~Gel~AimG~-----SGsGKtTLL~~Lagr~~~~~~~~G~ilv 92 (613)
T KOG0061|consen 23 PVKLSFRNLTLSSKEKSKKTKTILKGVSGTA-----KPGELLAIMGP-----SGSGKTTLLNALAGRLNGGLKLSGEILL 92 (613)
T ss_pred cceeEEEEEEEEecCCCCccceeeeCcEEEE-----ecCeEEEEECC-----CCCCHHHHHHHHhccccCCCcceEEEEE
Confidence 3445556666665433 378999999999 67777777766 4899999999999999976568999999
Q ss_pred CCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 92 NGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 92 ~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
||++... .+++.+|||.|||.++|+|||+|++.|++++++++..++++++++|+++++++||.+++|+.+|+ ++. |
T Consensus 93 NG~~~~~~~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~--~~~-r 169 (613)
T KOG0061|consen 93 NGRPRDSRSFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGN--PGI-R 169 (613)
T ss_pred CCccCchhhhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecC--CCC-C
Confidence 9987765 58999999999999999999999999999999988788899999999999999999999999999 455 9
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|+||||||||+||.+|++||.||+|||||+|||+.++.++++.|+++|++ |+|||+++|||+.++++++|++++|++|+
T Consensus 170 giSGGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~-grtVi~tIHQPss~lf~lFD~l~lLs~G~ 248 (613)
T KOG0061|consen 170 GLSGGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARS-GRTVICTIHQPSSELFELFDKLLLLSEGE 248 (613)
T ss_pred ccccchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhC-CCEEEEEEeCCcHHHHHHHhHhhhhcCCc
Confidence 99999999999999999999999999999999999999999999999995 99999999999999999999999999999
Q ss_pred eEEecChHHHHHHHHhCCCCCCCCCChHHHHHHhhccC-CchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCCc
Q psy2519 251 TAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVT-TNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYD 329 (622)
Q Consensus 251 iv~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (622)
++|+|+++++.+||...|++||++.||+||++|+++.+ ...+.....+.....+.++..+...+..... .......+
T Consensus 249 ~vy~G~~~~~~~ff~~~G~~~P~~~Npadf~l~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 326 (613)
T KOG0061|consen 249 VVYSGSPRELLEFFSSLGFPCPELENPADFLLDLLSVDSGTRELEEAVRIAKLINKFSQTDNLKKTLEAL--EKSLSTSK 326 (613)
T ss_pred EEEecCHHHHHHHHHhCCCCCCCcCChHHHHHHHHccCCCchhHHhHHHHHHHhhhccccchhhhhHHHH--hhhccccc
Confidence 99999999999999999999999999999999999863 3333333333344444443211111110000 00000000
Q ss_pred cccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHH
Q psy2519 330 FLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTEN 409 (622)
Q Consensus 330 ~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~ 409 (622)
.......++ ||.|+++|++|.+++.+|||.+...|+++.+++|+++|++||++ ++++.++++|.|++|+++.++
T Consensus 327 ----~~~~~~~~s-~~~q~~~L~~R~~~~~~R~~~~~~~r~~~~~~~~~~lg~~~~~~-~~~~~~~~~~~g~~~~~~~~~ 400 (613)
T KOG0061|consen 327 ----KVEIGTSPS-WWTQFKILLKRSLKNIRRDPSLLLLRLIQSLVTGLLLGLLYLNL-GNDAKGIQNRLGLFFFILSFM 400 (613)
T ss_pred ----ccccccCCc-HHHHHHHHHHHHhHHHhhcHHHHHHHHHHHHHHHHHHHHHhhCC-CCchHHHHHHHHHHHHHHHHH
Confidence 000111566 99999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHH
Q psy2519 410 TFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILII 489 (622)
Q Consensus 410 ~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~ 489 (622)
.|.+++++++.|+.||++|.||+.+|+|+.++|++|++++++|+.++.+++|.+|+|||+|++++..+|++|++++++..
T Consensus 401 ~f~~~~~~i~~f~~e~~~f~rE~~~~~Y~~s~y~la~~l~~lP~~~i~~~if~~i~Y~m~gl~~~~~~f~~~~l~~~~~~ 480 (613)
T KOG0061|consen 401 TFLSMFGAVPVFPQERPIFLRETSSGLYRLSSYYLAKTLAELPFLLVLSIIFSSIVYWMVGLNPGLSRFLYFLLIILLSS 480 (613)
T ss_pred HHHHHHhHHHHhHHHHHHHHHHHhcCchhHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCC
Q psy2519 490 NVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDN 569 (622)
Q Consensus 490 ~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~ 569 (622)
++++++|+++++.+||...|+.+++++.+++++|+||+++.+++|.||+|++|+||++|++|+++.|||.+ ....|...
T Consensus 481 ~~a~s~~~~i~~~~~~~~~a~~~~~~~~~~f~l~~G~fi~~~~ip~~~~w~~~~S~~ry~~e~l~~n~~~~-~~~~~~~~ 559 (613)
T KOG0061|consen 481 LVAESLGLFISAIVPNLSLATSLGPVLLLPFLLFGGFFINFDSIPKYFRWISYLSYFRYAFEALLINQFSG-GSSRCFLS 559 (613)
T ss_pred HHHHHHHHHHHHhccchhheeehHHHHHHHHHHHhhhhcCcccccHHHHHHHHHhHHHHHHHHHHHHHhhc-cccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999997 33477653
Q ss_pred CCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 570 PDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 570 ~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
....|..+|.++++..++++.+.|.|+.+++++.++|++++|++|+++.|++|
T Consensus 560 ~~~~~~~~~~~~l~~~~~~~~~~~~~l~~l~~~~~~~~il~y~~L~~~~~~~~ 612 (613)
T KOG0061|consen 560 GNLCCESTGEDVLKQLGFEDSSFWLDLLVLLAFIVFFRVLGYLALRFRVKRKR 612 (613)
T ss_pred cCCcccccHHHHHHhcCCcccccchhHHHHHHHHHHHHHHHHHHHHhhccccC
Confidence 32477789999999999999999999999999999999999999999988865
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-101 Score=880.74 Aligned_cols=571 Identities=26% Similarity=0.441 Sum_probs=482.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++|++++| +++++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+|+. .+|+|.+||+++.
T Consensus 69 ~~~~~l~~~~--~~~~iL~~vs~~i-----~~Ge~~aI~Gpn-----GaGKSTLL~iLaG~~~~~~-~sG~I~inG~~~~ 135 (659)
T PLN03211 69 PKISDETRQI--QERTILNGVTGMA-----SPGEILAVLGPS-----GSGKSTLLNALAGRIQGNN-FTGTILANNRKPT 135 (659)
T ss_pred cccccccccC--CCCeeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCc-eeEEEEECCEECc
Confidence 4577888875 6778999999999 677888888776 8999999999999998742 5899999999986
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++++|||+|++.+++.+||+||+.|.+.++.+...++++++++++++++.+||.+++|+.+|+ ...++||||||
T Consensus 136 ~~~~~~i~yv~Q~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~---~~~~~LSgGer 212 (659)
T PLN03211 136 KQILKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGN---SFIRGISGGER 212 (659)
T ss_pred hhhccceEEECcccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCC---CCCCCcChhhh
Confidence 655678999999999999999999999988776543344556667899999999999999999987 34567999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
||++||++|+.+|++|+|||||+|||+.++.++++.|+++++ +|+|||+++|||+.++.++||++++|++|++++.|++
T Consensus 213 qRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~ 291 (659)
T PLN03211 213 KRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQ-KGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKG 291 (659)
T ss_pred hHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHh-CCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCH
Confidence 999999999999999999999999999999999999999997 6999999999997678999999999999999999999
Q ss_pred HHHHHHHHhCCCCCCCCCChHHHHHHhhccCCch----hhhhHHHHHHHHHHhhhChhHHHHHHHhhh---ccccCCC--
Q psy2519 258 DAALAFLESQGYPCPYGYNPADFLIKSLAVTTND----ELSSRRRLKRICDEFSVCDFAKEVDLEINY---QTHVGTY-- 328 (622)
Q Consensus 258 ~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 328 (622)
+++.+||++.|++||++.||+||++++++.+... +.+.....+.+.+.|+.... .+....... .......
T Consensus 292 ~~~~~~f~~~G~~~P~~~NpADf~ldv~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 370 (659)
T PLN03211 292 SDAMAYFESVGFSPSFPMNPADFLLDLANGVCQTDGVSEREKPNVKQSLVASYNTLLA-PKVKAAIEMSHFPQANARFVG 370 (659)
T ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHcCccccCCCccccccchHHHHHHHHHHhhcc-HHHHHHHhhhhhhcchhhhhh
Confidence 9999999999999999999999999998643211 11112223445566643211 111111100 0000000
Q ss_pred -cc-ccc-cCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHH
Q psy2519 329 -DF-LAD-FNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIM 405 (622)
Q Consensus 329 -~~-~~~-~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~ 405 (622)
.. ... .....+.++ |++|+.+|++|++++ +||+.+...|+++++++|+++|++||++ + +.++++|.|++||+
T Consensus 371 ~~~~~~~~~~~~~~~~s-~~~Q~~~L~~R~~~~-~r~~~~~~~r~~~~i~~~ll~G~lf~~~-~--~~~~~~r~g~lff~ 445 (659)
T PLN03211 371 SASTKEHRSSDRISIST-WFNQFSILLQRSLKE-RKHESFNTLRVFQVIAAALLAGLMWWHS-D--FRDVQDRLGLLFFI 445 (659)
T ss_pred cccccccccCCCccCCC-HHHHHHHHHHHHHHH-HhCcHHHHHHHHHHHHHHHHHHHHHhcC-C--HHHHHHHHHHHHHH
Confidence 00 000 011124467 999999999999998 8999999999999999999999999998 4 67899999999999
Q ss_pred HHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHH
Q psy2519 406 VTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLIC 485 (622)
Q Consensus 406 ~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~ 485 (622)
++++++.+++++++.|+.||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|++++
T Consensus 446 ~~~~~~~~~~~~~~~f~~er~v~~rE~~~~~Y~~~~Y~la~~l~elP~~~~~~~if~~i~Y~m~Gl~~~~~~F~~f~li~ 525 (659)
T PLN03211 446 SIFWGVFPSFNSVFVFPQERAIFVKERASGMYTLSSYFMARIVGDLPMELILPTIFLTVTYWMAGLKPELGAFLLTLLVL 525 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHhhhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeEcCCCcCCHHHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcc--
Q psy2519 486 ILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTN-- 563 (622)
Q Consensus 486 ~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~-- 563 (622)
++..++++++|+++++++|+..+|+.+++++++++++|+||+++ +||+||+|++|+||++||+||++.|||++...
T Consensus 526 ~l~~~~~~s~g~~i~a~~~~~~~a~~~~~~~~~~~~lfsGf~i~--~ip~~~~W~~ylS~~~y~~eal~~nef~~~~~~~ 603 (659)
T PLN03211 526 LGYVLVSQGLGLALGAAIMDAKKASTIVTVTMLAFVLTGGFYVH--KLPSCMAWIKYISTTFYSYRLLINVQYGEGKRIS 603 (659)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhhhhHh--hchHHHHHHHHhCHHHHHHHHHHHHhcCCccccc
Confidence 99999999999999999999999999999999999999999997 79999999999999999999999999986532
Q ss_pred --cccCCC---CCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 564 --ITCFDN---PDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 564 --~~C~~~---~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
++|..+ ....|...++.++ ...+.|.++++|++++++|++++|++|++.+
T Consensus 604 ~~~~C~~~~~~~~~~c~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~l~~~~L~~~~ 658 (659)
T PLN03211 604 SLLGCSLPHGSDRASCKFVEEDVA-----GQISPATSVSVLIFMFVGYRLLAYLALRRIK 658 (659)
T ss_pred cccCCCCcccCCCCCCccchhhhh-----cccchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 368642 1134655554444 3457899999999999999999999998754
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-96 Score=895.34 Aligned_cols=571 Identities=23% Similarity=0.316 Sum_probs=495.3
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCEecCc---cccccEEE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNGKPVEG---KFRSACGF 106 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G~~~~~---~~r~~igy 106 (622)
++++|+++|+.+ ++|+.++++|+| |||||||||+|+|+.++. ...+|+|.+||+++.. ..|+.++|
T Consensus 73 ~~~iL~~vs~~i-----~~Ge~~aIlG~n-----GsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~~~~r~~i~y 142 (1394)
T TIGR00956 73 TFDILKPMDGLI-----KPGELTVVLGRP-----GSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIKKHYRGDVVY 142 (1394)
T ss_pred cceeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHHhhcCceeEE
Confidence 467999999999 677788888776 899999999999997421 1269999999998753 35677999
Q ss_pred EecCCCCCCCCCHHHHHHHHHHcCCCc----cccHHHHHHH-HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHH
Q psy2519 107 MYQHDLFSPSLTVYEHLYFMALLKLDR----RVKAYQRIAL-INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181 (622)
Q Consensus 107 V~Q~~~l~~~lTV~E~l~f~~~l~~~~----~~~~~~~~~~-v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvs 181 (622)
|+|++.++|.+||+||+.|+++++.+. ..++++..++ ++++++.+||.+++|+++|+ ..++||||||||||+
T Consensus 143 v~Q~d~~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~---~~~~~LSGGerkRvs 219 (1394)
T TIGR00956 143 NAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGN---DFVRGVSGGERKRVS 219 (1394)
T ss_pred eccccccCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCC---CcCCCCCcccchHHH
Confidence 999999999999999999998876432 1233443333 56789999999999999998 456789999999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|||+++|||++++.++||++++|++|+++++|+++++.
T Consensus 220 IA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 220 IAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred HHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 99999999999999999999999999999999999997569999999999888999999999999999999999999999
Q ss_pred HHHHhCCCCCCCCCChHHHHHHhhccCC-----chhhhhHHHHHHHHHHhhhChhHHHHHHHhhhc--cccC--------
Q psy2519 262 AFLESQGYPCPYGYNPADFLIKSLAVTT-----NDELSSRRRLKRICDEFSVCDFAKEVDLEINYQ--THVG-------- 326 (622)
Q Consensus 262 ~~~~~~g~~~p~~~n~~d~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~-------- 326 (622)
+||+++|++||++.||+||++++.+.+. +.|...+...+++++.|++|+..+++.++++.. ....
T Consensus 300 ~yF~~lG~~~p~~~n~aDfl~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (1394)
T TIGR00956 300 QYFEKMGFKCPDRQTTADFLTSLTSPAERQIKPGYEKKVPRTPQEFETYWRNSPEYAQLMKEIDEYLDRCSESDTKEAYR 379 (1394)
T ss_pred HHHHHcCCCCCCCCChHHHHHhccChhhhhccccccccCCCCHHHHHHHHHcCHHHHHHHHHHHHHhhhccchhhHHHHH
Confidence 9999999999999999999999875321 112222345678899999988766555443210 0000
Q ss_pred ---CC-ccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHH
Q psy2519 327 ---TY-DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGAL 402 (622)
Q Consensus 327 ---~~-~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~l 402 (622)
.. ........+++..| +++|+++|++|++++.+|||.+++.|+++.+++|+++|++||++ +++++++++|.|++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~s-~~~Q~~~l~~R~~~~~~Rd~~~~~~r~~~~ii~~li~G~~F~~~-~~~~~~~~~r~g~l 457 (1394)
T TIGR00956 380 ESHVAKQSKRTRPSSPYTVS-FSMQVKYCLARNFLRMKGNPSFTLFMVFGNIIMALILSSVFYNL-PKNTSDFYSRGGAL 457 (1394)
T ss_pred HHHHhhhcccccCCCCCcCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCC-CCCchhHHHHHHHH
Confidence 00 00011123457788 99999999999999999999999999999999999999999999 88999999999999
Q ss_pred HHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHH
Q psy2519 403 FIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAV 482 (622)
Q Consensus 403 f~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~ 482 (622)
||++++.+|+++.+ +..+..||++|+||+.+|+|++++|++|++++|+|+.++.+++|++|+|||+||++++.+||+|+
T Consensus 458 f~~~~~~~~~~~~~-i~~~~~eR~i~~re~~~~~Y~~~ay~la~~l~~iP~~~~~~~if~~i~Yfm~gl~~~~~~Ff~f~ 536 (1394)
T TIGR00956 458 FFAILFNAFSSLLE-IASMYEARPIVEKHRKYALYHPSADAIASIISEIPFKIIESVVFNIILYFMVNFRRTAGRFFFYL 536 (1394)
T ss_pred HHHHHHHHHHHHHH-HHHHHhcCcceeeeccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhhEEcCCCcccHHHHHHHH
Confidence 99999999999755 55566799999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCc
Q psy2519 483 LICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVT 562 (622)
Q Consensus 483 ~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~ 562 (622)
++++++.+++.+++.++++++|+..+|+.+++++++++++|+||+++.++||+||+|++|+||++|||||++.|||++.+
T Consensus 537 l~~~l~~~~~~~~~~~i~a~~~~~~~A~~~~~~~~~~~~lf~Gf~i~~~~mp~~~~W~~yisp~~yafeal~~nef~~~~ 616 (1394)
T TIGR00956 537 LILFICTLAMSHLFRSIGAVTKTLSEAMTPAAILLLALSIYTGFAIPRPSMLGWSKWIYYVNPLAYAFESLMVNEFHGRR 616 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcccccChhhccHHHHHHHHcCHHHHHHHHHHHhhhcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred ccccCC---------C---CCCCC----------ccChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 563 NITCFD---------N---PDLPC----------LEDGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 563 ~~~C~~---------~---~~~~c----------~~~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
+ +|.. + ....| ..+|+++|+ .++++++++|+|+++|++++++|++++++++.+.+
T Consensus 617 ~-~C~~~~p~g~~y~~~~~~~~~C~~~g~~~g~~~~~G~~~L~~~~~~~~~~~w~n~gil~~~~v~f~~~~~l~l~~~~ 694 (1394)
T TIGR00956 617 F-ECSQYVPSGGGYDNLGVTNKVCTVVGAEPGQDYVDGDDYLKLSFQYYNSHKWRNFGIIIGFTVFFFFVYILLTEFNK 694 (1394)
T ss_pred c-cccccccCCCCCCCCCccCccccCCCCcCCcccccHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4 8952 0 11246 348999998 68999999999999999999999999999998765
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-96 Score=890.54 Aligned_cols=580 Identities=22% Similarity=0.336 Sum_probs=499.5
Q ss_pred cccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++++.. +++++|+++|+++ ++|+.+.|+|+| |||||||||+|+|+.+++...+|+|.+||++
T Consensus 760 l~~~nl~~~~~~~~~~~~iL~~vs~~i-----~~Ge~~aI~G~s-----GaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~ 829 (1394)
T TIGR00956 760 FHWRNLTYEVKIKKEKRVILNNVDGWV-----KPGTLTALMGAS-----GAGKTTLLNVLAERVTTGVITGGDRLVNGRP 829 (1394)
T ss_pred EEEEeeEEEecCCCCCcEeeeCCEEEE-----ECCEEEEEECCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEE
Confidence 468999998742 3568999999999 677788888776 8999999999999998543357999999999
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+...+|+.+|||+|++.+++.+||+||+.|++.++.+...+++++.++++++++.+||.+++|+.+++ ++ ++||||
T Consensus 830 ~~~~~~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~--~~--~~LSgG 905 (1394)
T TIGR00956 830 LDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGV--PG--EGLNVE 905 (1394)
T ss_pred CChhhhcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCC--CC--CCCCHH
Confidence 87667889999999999999999999999998887654445566778899999999999999999986 22 269999
Q ss_pred HHHHHHHHHHHhhCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC-ceEE
Q psy2519 176 ERKRLSFATELLTDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS-RTAF 253 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~-lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G-~iv~ 253 (622)
|||||+||+||+.+|+ +|||||||+|||+.++.++++.|+++++ +|+|||+++|||+..+++.||++++|++| ++++
T Consensus 906 qrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~-~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 906 QRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLAD-HGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHH-cCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 9999999999999997 9999999999999999999999999987 69999999999976677899999999987 9999
Q ss_pred ecCh----HHHHHHHHhCCC-CCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhhc-cccCC
Q psy2519 254 IGSK----DAALAFLESQGY-PCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQ-THVGT 327 (622)
Q Consensus 254 ~G~~----~~~~~~~~~~g~-~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~ 327 (622)
.|++ +++.+||++.|+ +||++.|||||++|+++...+.+ ..+.+.+.|+.++..++...+++.. .....
T Consensus 985 ~G~~~~~~~~~~~yf~~~G~~~~p~~~NpAd~~ldvi~~~~~~~-----~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1059 (1394)
T TIGR00956 985 FGDLGENSHTIINYFEKHGAPKCPEDANPAEWMLEVIGAAPGAH-----ANQDYHEVWRNSSEYQAVKNELDRLEAELSK 1059 (1394)
T ss_pred ECCcccccchHHHHHHhcCCCCCCCCCCHHHHHHHHhhcccccc-----hhccHHHHHhcCHHHHHHHHHHHHhhccccc
Confidence 9997 568899999996 99999999999999986543221 1235777888776655544332111 11010
Q ss_pred C-ccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHH
Q psy2519 328 Y-DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMV 406 (622)
Q Consensus 328 ~-~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~ 406 (622)
. .........++++| |++|+++|++|++++.||||.++..|+++.+++|+++|++||++ ++++.++++|.|++|+++
T Consensus 1060 ~~~~~~~~~~~~~~~s-~~~q~~~l~~R~~~~~~R~~~~~~~r~~~~i~~~l~~G~~f~~~-~~~~~~i~~~~g~~f~~~ 1137 (1394)
T TIGR00956 1060 AEDDNDPDALSKYAAS-LWYQFKLVLWRTFQQYWRTPDYLYSKFFLTIFAALFIGFTFFKV-GTSLQGLQNQMFAVFMAT 1137 (1394)
T ss_pred CccccccccccccCCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHHH
Confidence 1 00011122457888 99999999999999999999999999999999999999999999 899999999999999988
Q ss_pred HHHHHHhHHHHHhhhhhhhhHH-HHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHH-------H
Q psy2519 407 TENTFSPMYSVLSQFPDMLPLF-HREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSV-------F 478 (622)
Q Consensus 407 ~~~~~~~~~~~~~~f~~er~v~-~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~-------f 478 (622)
++..+. +..+++.|+.||.++ +||+.+|+|++.+|++|++++|+|+.++.+++|.+|+|||+||++++.. |
T Consensus 1138 ~~~~~~-~~~~~~~f~~~r~~~~~RE~~s~~Y~~~~y~~a~~l~elP~~~~~~~if~~i~Y~~~Gl~~~~~~~~~~~~~f 1216 (1394)
T TIGR00956 1138 VLFNPL-IQQYLPPFVAQRDLYEVRERPSRTFSWLAFIAAQITVEIPYNLVAGTIFFFIWYYPVGFYWNASKTGQVHERG 1216 (1394)
T ss_pred HHHHHH-HHHhhhhHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhheeecccccCcccccccccchH
Confidence 877665 346788888888886 8999999999999999999999999999999999999999999988765 9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHh
Q psy2519 479 LMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558 (622)
Q Consensus 479 ~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef 558 (622)
++|++++++..+++.++|+++++++|+..+|+.++++++.++++|+||+++.++||.||+|++|+||++|++++++.|||
T Consensus 1217 ~~~~~~~~~~~~~~~s~g~~~~~~~~~~~~a~~~~~~~~~~~~lf~G~~~~~~~ip~~~~w~~~~sp~~y~~~~l~~~~~ 1296 (1394)
T TIGR00956 1217 VLFWLLSTMFFLYFSTLGQMVISFNPNADNAAVLASLLFTMCLSFCGVLAPPSRMPGFWIFMYRCSPFTYLVQALLSTGL 1296 (1394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhccccCChhHCcHHHhHHHhcCHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccCCC------------------------------C--C---CCCcc-ChHHHHhhcCCCCCCchhhHHHHHHH
Q psy2519 559 QGVTNITCFDN------------------------------P--D---LPCLE-DGAQVINNMNFSPDNLYPNLIAMVVL 602 (622)
Q Consensus 559 ~~~~~~~C~~~------------------------------~--~---~~c~~-~g~~~L~~~~~~~~~~~~~~~il~~~ 602 (622)
++.+ ++|.++ + . .+|+. +|+++|+.++++.++.|+|+++++++
T Consensus 1297 ~~~~-~~C~~~e~~~f~pp~~~tC~~y~~~~~~~~~G~l~~~~a~~~C~yC~~~~~~~~l~~~~~~~~~~w~~~~i~~~~ 1375 (1394)
T TIGR00956 1297 ADVP-VTCKVKELLTFNPPSGQTCGEYMKPYLENAGGYLLNPNATDSCSFCQYSYTNDFLEPISSKYSGRWRNFGIFIAF 1375 (1394)
T ss_pred CCCe-eecCccccceecCCCCCCHHHHHHHHHhhCCcEeeCCCCCCCCCcCCCCCHHHHHHHcCCcccccccchhhhhHH
Confidence 9875 366531 0 1 24554 99999999999999999999999998
Q ss_pred HHHHHHHHHHHHHhhcccCC
Q psy2519 603 YFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 603 ~~~f~~l~~~~L~~~~~~~~ 622 (622)
++++ ++++++|+|+.|.+|
T Consensus 1376 ~~~~-~~~~~~l~~~~r~~k 1394 (1394)
T TIGR00956 1376 IFFN-IIATVFFYWLARVPK 1394 (1394)
T ss_pred HHHH-HHHHHhhheEEEcCC
Confidence 8888 888899988776554
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-95 Score=885.20 Aligned_cols=580 Identities=20% Similarity=0.334 Sum_probs=500.3
Q ss_pred cccCCccccccc-----------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 18 EEVPNVDFSEIV-----------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 18 ~~~~~~~~~~~~-----------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
+..+||++++.. ++.++|+++|+.+ ++|+.++++|+| |||||||||+|+|+.+++ ..+
T Consensus 868 ~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i-----~~Gel~aL~G~s-----GaGKTTLL~~LaG~~~~g-~~~ 936 (1470)
T PLN03140 868 MSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAF-----RPGVLTALMGVS-----GAGKTTLMDVLAGRKTGG-YIE 936 (1470)
T ss_pred EEEEEEEEEEccCccccccccCcCCceEeeCcEEEE-----ECCeEEEEECCC-----CCCHHHHHHHHcCCCCCC-ccc
Confidence 456778777532 3457999999999 677788888776 899999999999998753 368
Q ss_pred eEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 87 GDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 87 G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
|+|.+||++... .+++.+|||+|++.++|.+||+|||.|++.++.+...+++++.++++++++.+||.+++|+.+|.
T Consensus 937 G~I~inG~~~~~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~-- 1014 (1470)
T PLN03140 937 GDIRISGFPKKQETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGL-- 1014 (1470)
T ss_pred ceEEECCccCChHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCC--
Confidence 999999998764 46778999999999999999999999998777654445566677899999999999999999987
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
| .++||||||||||+||++|+.+|++|||||||+|||+.++.++++.|+++++ .|+|||+++|||+.++++.||++++
T Consensus 1015 ~-~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~-~g~tVI~t~Hq~~~~i~~~~D~vll 1092 (1470)
T PLN03140 1015 P-GVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLL 1092 (1470)
T ss_pred C-CCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCCCHHHHHhCCEEEE
Confidence 3 3467999999999999999999999999999999999999999999999997 6999999999997678899999999
Q ss_pred ecC-CceEEecCh----HHHHHHHHhC-CCC-CCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHH
Q psy2519 246 LAD-SRTAFIGSK----DAALAFLESQ-GYP-CPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLE 318 (622)
Q Consensus 246 L~~-G~iv~~G~~----~~~~~~~~~~-g~~-~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 318 (622)
|++ |+++++|++ +++.+||+++ |.+ ||+..|||||++++++..... ....++++.|+.|+.+++....
T Consensus 1093 L~~gG~~v~~G~~~~~~~~~~~yF~~~~g~~~~p~~~NPAd~~l~v~~~~~~~-----~~~~d~~~~~~~s~~~~~~~~~ 1167 (1470)
T PLN03140 1093 MKRGGQVIYSGPLGRNSHKIIEYFEAIPGVPKIKEKYNPATWMLEVSSLAAEV-----KLGIDFAEHYKSSSLYQRNKAL 1167 (1470)
T ss_pred EcCCCEEEEECCcccccccHHHHHHhcCCCCCCCCCCCchhhhhhhhcccccc-----cccchHHHHHhccHHHHHHHHH
Confidence 996 899999996 5789999997 664 999999999999997643211 1123688899988877665443
Q ss_pred hhhccccCCCccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCCh---hhH
Q psy2519 319 INYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQ---RGV 395 (622)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~---~~~ 395 (622)
...... ............++++| +++|+.+|++|+++++||||.+++.|+++.+++|+++|++||++ ++++ .++
T Consensus 1168 ~~~~~~-~~~~~~~~~~~~~~~~s-~~~Q~~~l~~R~~~~~~R~p~~~~~r~~~~i~~al~~G~~f~~~-~~~~~~~~~~ 1244 (1470)
T PLN03140 1168 VKELST-PPPGASDLYFATQYSQS-TWGQFKSCLWKQWWTYWRSPDYNLVRFFFTLAAALMVGTIFWKV-GTKRSNANDL 1244 (1470)
T ss_pred HHHhcc-CCCCccccccCccccCC-HHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHhhCC-CCCcchhhhH
Confidence 311000 00000011123457788 99999999999999999999999999999999999999999999 6654 577
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccH
Q psy2519 396 QSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSL 475 (622)
Q Consensus 396 ~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~ 475 (622)
+++.|++|+++++.++..+.++++.|..||++|+||+++|+|++++|++|++++|+|+.++.+++|.+|+|||+||++++
T Consensus 1245 ~~~~g~l~~~~~~~~~~~~~~~~p~~~~eR~vf~REr~~~~Y~~~~y~la~~l~eiP~~~~~~~if~~i~Y~m~Gl~~~~ 1324 (1470)
T PLN03140 1245 TMVIGAMYAAVLFVGINNCSTVQPMVAVERTVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAFEWTA 1324 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCccH
Confidence 88999999999999998888889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHH
Q psy2519 476 SVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTI 555 (622)
Q Consensus 476 ~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~ 555 (622)
..||+|++++++..+++.++|+++++++|+.++|+.++++++.++++|+||+++.++||.||+|++|+||++|++++++.
T Consensus 1325 ~~f~~~~~~~~l~~~~~~~~g~~~~a~~p~~~~A~~~~~~~~~~~~lf~Gf~i~~~~iP~~~~W~~~isp~~y~~~~l~~ 1404 (1470)
T PLN03140 1325 AKFFWFYFISFFSFLYFTYYGMMTVSLTPNQQVAAIFAAAFYGLFNLFSGFFIPRPKIPKWWVWYYWICPVAWTVYGLIV 1404 (1470)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHeeeccChHHCchHHHHHHHcCHHHHHHhhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCcccccCCCCCCCCccChHHH-HhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcccCC
Q psy2519 556 TQWQGVTNITCFDNPDLPCLEDGAQV-INNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRPKS 622 (622)
Q Consensus 556 nef~~~~~~~C~~~~~~~c~~~g~~~-L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~~~ 622 (622)
|||++.+. +|..++. ....+++++ ++.+|++.+++|++++++++|+++|++++++++++.+..||
T Consensus 1405 ~~f~~~~~-~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~il~~~~~~f~~~~~~~~~~~~~q~r 1470 (1470)
T PLN03140 1405 SQYGDVED-TIKVPGG-APDPTIKWYIQDHYGYDPDFMGPVAAVLVGFTVFFAFIFAFCIRTLNFQTR 1470 (1470)
T ss_pred HHhCCCCC-cccCCCC-CCCCcHHHHHHHhcCcCcccccchhhhHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99998764 4432110 011256666 57899999999999999999999999999999999888887
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-94 Score=873.49 Aligned_cols=569 Identities=20% Similarity=0.308 Sum_probs=487.6
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q 109 (622)
++++|+++|+.+ ++|+.++++|+| |||||||||+|+|+++|+...+|+|.+||++++. ..++.+|||+|
T Consensus 177 ~~~IL~~vs~~i-----~~Ge~~~llGpn-----GSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~~~~i~yv~Q 246 (1470)
T PLN03140 177 KLTILKDASGII-----KPSRMTLLLGPP-----SSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVPRKTSAYISQ 246 (1470)
T ss_pred cceeccCCeEEE-----eCCeEEEEEcCC-----CCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcccceeEEecc
Confidence 467999999999 678888888776 8999999999999998854469999999999865 34778999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCc-------cccHHHH------------------------HHHHHHHHHHhCCCcccC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDR-------RVKAYQR------------------------IALINSLLIELGLMNSQH 158 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~-------~~~~~~~------------------------~~~v~~~l~~lgL~~~~~ 158 (622)
+|.++|.+||+||+.|+++++... ..+++++ ...++++++.+||++++|
T Consensus 247 ~d~~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~ 326 (1470)
T PLN03140 247 NDVHVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKD 326 (1470)
T ss_pred cccCCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccC
Confidence 999999999999999998765321 0111111 123678999999999999
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
+.+|+ ..++||||||||||+||++|+.+|++++|||||+|||+.++.++++.|++++++.|+|+|+++|||.+++++
T Consensus 327 t~vg~---~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~ 403 (1470)
T PLN03140 327 TIVGD---EMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFD 403 (1470)
T ss_pred ceeCC---ccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHH
Confidence 99998 556889999999999999999999999999999999999999999999999876699999999999889999
Q ss_pred hccceeeecCCceEEecChHHHHHHHHhCCCCCCCCCChHHHHHHhhccCCchhh---h-h---HHHHHHHHHHhhhChh
Q psy2519 239 MFDKIILLADSRTAFIGSKDAALAFLESQGYPCPYGYNPADFLIKSLAVTTNDEL---S-S---RRRLKRICDEFSVCDF 311 (622)
Q Consensus 239 ~~D~v~~L~~G~iv~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~~~~~~~~~---~-~---~~~~~~l~~~~~~~~~ 311 (622)
+||+|++|++|+++|+|+++++.+||+++|++||+..||+||++++.+....... . . ....+++++.|+.++.
T Consensus 404 lfD~vilL~~G~ivy~G~~~~~~~yF~~lGf~cP~~~n~ADFl~~v~s~~~~~~~~~~~~~p~~~~~~~~~~~~~~~s~~ 483 (1470)
T PLN03140 404 LFDDIILLSEGQIVYQGPRDHILEFFESCGFKCPERKGTADFLQEVTSKKDQEQYWADRNKPYRYISVSEFAERFKSFHV 483 (1470)
T ss_pred HhheEEEeeCceEEEeCCHHHHHHHHHHcCCCCCCCCChHHHHHHhcCchhhhhhhhccCCccccCCHHHHHHHHHhcHH
Confidence 9999999999999999999999999999999999999999999998764211010 0 0 1246788999998877
Q ss_pred HHHHHHHhhhccccCCCccccccCCCCcCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCC
Q psy2519 312 AKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT 391 (622)
Q Consensus 312 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~ 391 (622)
..++..+++.......... .....+++..+ ++.|++.+++|+++..+||+..+..|+++.+++|+++|++||++ +.+
T Consensus 484 ~~~~~~~~~~~~~~~~~~~-~~~~~~~y~~s-~~~q~~~~~~R~~~~~~Rd~~~~~~r~~~~ii~ali~GsvF~~~-~~~ 560 (1470)
T PLN03140 484 GMQLENELSVPFDKSQSHK-AALVFSKYSVP-KMELLKACWDKEWLLMKRNAFVYVFKTVQIIIVAAIASTVFLRT-EMH 560 (1470)
T ss_pred HHHHHHHHhhhhhhhhccc-ccccCCCCcCC-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCC
Confidence 6665554321100000000 11123457888 99999999999999999999999999999999999999999999 543
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhc
Q psy2519 392 ---QRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWI 468 (622)
Q Consensus 392 ---~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~ 468 (622)
..+.+.+.|++||++++.+|.++ ..++.+..||+||+|||.+++|++++|++|++++|+|+.++.+++|++|+|||
T Consensus 561 ~~~~~~~~~~~g~lff~~l~~~~~~~-~~l~~~~~~r~vf~ker~~~~Y~~~ay~la~~l~~iP~~~i~~~if~~I~Y~m 639 (1470)
T PLN03140 561 TRNEEDGALYIGALLFSMIINMFNGF-AELALMIQRLPVFYKQRDLLFHPPWTFTLPTFLLGIPISIIESVVWVVITYYS 639 (1470)
T ss_pred CCcchhHHHHHHHHHHHHHHHHHHHH-HHHHHHHhccchhHHhhhccCcCHHHHHHHHHHHHHHHHHHHHHHHHhHHhhh
Confidence 23457788999999999888876 56788889999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHH
Q psy2519 469 SGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEY 548 (622)
Q Consensus 469 ~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Y 548 (622)
+||++++++||+|+++++++++++.+++.++++++++..+|+.+++++++++++|+||+++.++||+||+|++|+||++|
T Consensus 640 ~Gl~~~~~~Ff~f~l~~~l~~~~~~~l~~~i~a~~~~~~~A~~~~~~~~l~~~lf~Gf~i~~~~ip~w~~W~~yisp~~Y 719 (1470)
T PLN03140 640 IGFAPEASRFFKQLLLVFLIQQMAAGIFRLIASVCRTMIIANTGGALVLLLVFLLGGFILPKGEIPNWWEWAYWVSPLSY 719 (1470)
T ss_pred cCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHccceechHhCchHHHHHHHhCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCC--chhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 549 SNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDN--LYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 549 a~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~--~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
|+||++.|||.+.....|...+ .+...|+++|+.+|+.+++ .|+++++|++++++|+++++++|++.+
T Consensus 720 a~eal~~NEf~~~~~~~~~~~~--~~~~~G~~~L~~~g~~~~~~~~w~~~~iL~~~~v~f~~l~~l~L~~~~ 789 (1470)
T PLN03140 720 GFNALAVNEMFAPRWMNKMASD--NSTRLGTAVLNIFDVFTDKNWYWIGVGALLGFTILFNVLFTLALTYLN 789 (1470)
T ss_pred HHHHHHHHhccCccccCcccCC--CCcccHHHHHHhcCcCccccchhhhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999875432221111 2345999999999998654 489999999999999999999999765
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-89 Score=785.59 Aligned_cols=565 Identities=24% Similarity=0.350 Sum_probs=481.6
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
+++++|++|+=-+ ++|.-+++.|. ||||||||||+|+||...+. ++|+|++||.|.++ .++|.+|||.
T Consensus 802 ~~~qLL~~V~G~~-----kPG~LTALMG~-----SGAGKTTLLdvLA~R~t~G~-I~Gdi~i~G~p~~q~tF~R~~GYvq 870 (1391)
T KOG0065|consen 802 GTRQLLNNVSGAF-----KPGVLTALMGE-----SGAGKTTLLDVLAGRKTGGY-IEGDILISGFPKDQETFARVSGYVE 870 (1391)
T ss_pred cceEhhhcCceEe-----cCCceeehhcC-----CCCchHHHHHHHhcCcccce-EEeEEEECCeeCchhhhccccceee
Confidence 3456666666555 44445555544 59999999999999987654 89999999999984 6999999999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|+|.+.|.+||+|.|.|+|.+|++..++.+++.+.|+++++.++|++++|..||. |+ +|||..||||++||.+|+.
T Consensus 871 Q~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~--~G--~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 871 QQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGL--PG--SGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred cccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccC--CC--CCCCHHHhceeeEEEEEec
Confidence 9999999999999999999999998899898889999999999999999999999 66 7999999999999999999
Q ss_pred CC-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CCceEEecChHH----HHH
Q psy2519 189 DP-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAFIGSKDA----ALA 262 (622)
Q Consensus 189 ~P-~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G~iv~~G~~~~----~~~ 262 (622)
+| .||+|||||||||+.++..|++.+|++++ .|+||+|++|||+.++++.||++++|+ .|++||.|+..+ +++
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~-tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~~s~~li~ 1025 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLAD-TGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGENSSKLIE 1025 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHh-cCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcccccHHHHH
Confidence 99 89999999999999999999999999998 899999999999999999999999997 689999999764 668
Q ss_pred HHHhCC-CCCCCCCChHHHHHHhhccCCchhhhhHHHHHHHHHHhhhChhHHHHHHHhhh-ccccCCCccccccCCCCcC
Q psy2519 263 FLESQG-YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINY-QTHVGTYDFLADFNSRKIK 340 (622)
Q Consensus 263 ~~~~~g-~~~p~~~n~~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 340 (622)
||+++| .+||...|||||++|++....+.+. -.++++.|+.|+.++.+.++++. +...+. .........+++
T Consensus 1026 YFes~~~~~~~~~~NPA~~mLevi~~~~~~~~-----~~D~a~~w~~S~e~k~~~e~v~~l~~~~~~-~~~~~~~~~~fa 1099 (1391)
T KOG0065|consen 1026 YFESIGGVKCISDENPAEWMLEVIGAGAEASL-----SVDFAEIWKNSEEYKRNKELVKELSQPPPG-FSTDLEFKTRFA 1099 (1391)
T ss_pred HHHhcCCccCCCCCChHHHHHhhccccccccc-----CccHHHHHhccHHHHHHHHHHHHHhcCCcc-CCcccccccccc
Confidence 999875 8999999999999999875443322 23789999999988877666531 111111 111233445688
Q ss_pred CChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy2519 341 KPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQ 420 (622)
Q Consensus 341 ~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 420 (622)
+| +|.|++.+++|++..+||+|.++..|++..++.|+++|+.||+. ++..+++||.+|++|+.+++..-.......+.
T Consensus 1100 ~s-~~~Q~k~~l~Rq~~syWRsp~y~~ar~~~~i~~gl~iGf~F~~~-g~~~q~lqn~m~a~yma~v~~~~~~~~~~~~~ 1177 (1391)
T KOG0065|consen 1100 QS-LWYQFKLCLWRQFLSYWRSPDYLMARFALTIVAGLFIGFTFWKV-GHNVQGLQNAMGAAYMATVFSGPNNNQLQQPA 1177 (1391)
T ss_pred hh-HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhheeeeeec-CCcHHHHHHHHHHHHHHHHHhhhhhhhhhhhH
Confidence 89 99999999999999999999999999999999999999999999 89999999999999999887665544345566
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+..||.+++||+++|+||+.+|++|++++|+|+.++++.+|.+|+|+++|++.++.+|++|++..+++.++...+|+++.
T Consensus 1178 v~~e~~y~~RE~~s~mYs~~~~~~aq~~vEiP~~l~~stl~~~~~Y~~iGF~~~a~~~~~f~~~~~~f~lYf~~~Gmm~~ 1257 (1391)
T KOG0065|consen 1178 VATERLYEYRERASNMYSWTPFALAQVLVEIPYNLLQSTLFFLITYYPIGFYWTASKFFWFLLFMFIFFLYFTTLGMMLV 1257 (1391)
T ss_pred HhhhhhheeeecccCcccHHHHHHHHHHHHHHHHHHHHHHhheeeeeeccchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCC----CCCCcc
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNP----DLPCLE 576 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~----~~~c~~ 576 (622)
+++||.+.|..+.++++..+.+|+||+++++.||.||+|++|+||+.|-.++++..++++.+ .+|...+ +++|..
T Consensus 1258 s~tPn~~~Aav~~s~~~s~~~~F~G~l~p~~~iP~fW~wmy~lsP~ty~l~gli~~~~~d~~-v~c~~~e~~~~~pp~g~ 1336 (1391)
T KOG0065|consen 1258 SLTPNLQTAAVIASLFFSFWNLFSGFLQPRSLIPKFWIWMYYLSPVTYTLEGLISSQLGDVE-VTCEDSEMNYFDPPSGQ 1336 (1391)
T ss_pred HhCCChhHHHHHHHHHHHHHHHhcccccccccccceeeeeeecCcHHHHHHHHHHHHhCCCc-eeeecCCccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999876 4786411 113332
Q ss_pred -ChHHHHhhcC----CCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 577 -DGAQVINNMN----FSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 577 -~g~~~L~~~~----~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
.|+.+...+| +..+.......+.+.+.+++..++.+.+++.++
T Consensus 1337 tcge~m~~~~~~~~Gy~~n~~a~~~c~~c~y~v~~~~l~~f~~~y~~~ 1384 (1391)
T KOG0065|consen 1337 TCGEFMEDFFGEGTGYLHNPLATTACVYCAYTVADAFLAAFNIKYLNF 1384 (1391)
T ss_pred CHHHHHHHHhccCcceeccCcceeEEEEeeeehHHHHHHHHHHHHHHH
Confidence 2444444566 444333333444555666666666666665443
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-84 Score=741.58 Aligned_cols=569 Identities=24% Similarity=0.364 Sum_probs=496.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQH 110 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~ 110 (622)
.+++++++..+ ++|+.+.++|++ ||||||||++|+|.+.......|+|.+||.+.+. ..++.++|..|+
T Consensus 128 ~~il~~~sg~~-----~pg~m~lvLG~p-----gsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~~~~~aY~~e~ 197 (1391)
T KOG0065|consen 128 IQILKDISGII-----KPGEMTLVLGPP-----GSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVPKKTVAYNSEQ 197 (1391)
T ss_pred ceeecCcceeE-----cCCceEEEecCC-----CCchHHHHHHHhCCCcccccCCCceeECCCcccccccCceEEecccc
Confidence 46889998888 677777777665 8999999999999988755557899999999876 247889999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCcc----ccHHHHH-HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRR----VKAYQRI-ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~----~~~~~~~-~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|.++|.|||+|+|.|+++++.+.. .++.++. +..+.+++.+||++++|+.+|+ ..+||+||||||||++|.+
T Consensus 198 DvH~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGn---d~~RGvSGGerKRvsi~E~ 274 (1391)
T KOG0065|consen 198 DVHFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGN---DMVRGVSGGERKRVSIGEM 274 (1391)
T ss_pred ccccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecc---cccccccCcccceeeeeee
Confidence 999999999999999999987621 2223222 2678999999999999999999 7789999999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
++.+|+++++||+|.|||+.++.++++.|+++++..+.|++++.|||+++++++||+|++|.+|+++|+||.+++++||+
T Consensus 275 ~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~~yFe 354 (1391)
T KOG0065|consen 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVLPYFE 354 (1391)
T ss_pred eecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHHHHHH
Confidence 99999999999999999999999999999999998899999999999999999999999999999999999999999999
Q ss_pred hCCCCCCCCCChHHHHHHhhccCCc----hh---hhhHHHHHHHHHHhhhChhHHHHHHHhhhccccCCCccccccCCCC
Q psy2519 266 SQGYPCPYGYNPADFLIKSLAVTTN----DE---LSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRK 338 (622)
Q Consensus 266 ~~g~~~p~~~n~~d~~~~~~~~~~~----~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (622)
+.|+.||+..++|||+.++.+.... .+ ........++.+.|..++.+.++..+++..-...+ ..+.....++
T Consensus 355 ~~Gf~cP~r~~~ADfLt~vts~k~~~~~~~~~~~~~~~~~~~ef~~~~~~s~~~~~l~~~l~~~~~~~k-~~~~al~s~~ 433 (1391)
T KOG0065|consen 355 DMGFKCPPRKGTADFLTEVTSKKDQEQYWNKRSKPYPYTSVSEFAEYFLNSEDYAKLKKELSKPYDKSK-KHKAALVSSK 433 (1391)
T ss_pred hcCccCCCccCHHHHHHHhhcCccccccccccCCCcccCCHHHHHHHHhcchhhHHHHHHhcchhhhhh-ccchhhcCCc
Confidence 9999999999999999999872110 00 11122346888899999888877776532111111 1112346678
Q ss_pred cCCChhHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCC-CChhhHHHHHHHHHHHHHHHHHHhHHHH
Q psy2519 339 IKKPFWFTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSID-LTQRGVQSVQGALFIMVTENTFSPMYSV 417 (622)
Q Consensus 339 ~~~~~~~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~-~~~~~~~~~~g~lf~~~~~~~~~~~~~~ 417 (622)
+..| +|.|++.+++|.+....||..++..++++.+++|+++|++|++. + .+..+.+.|.|++||.+++.+|.++.+.
T Consensus 434 y~v~-~~~qvk~c~~R~f~l~k~n~~~~~~~~~~~~i~ali~gslF~~~-~~~t~~~~~~~~~~lffsll~~~f~~laEi 511 (1391)
T KOG0065|consen 434 YSVP-YWEQVKACTIREFLLMKRNYFYYVFKTVQLVIQALITGSLFYRT-PMSTTSGGYSRGGALFFALLFNLFNGLAEI 511 (1391)
T ss_pred eecc-HHHHHHHHHHHHHHHHhCCceEEEhHHHHHHHHHHHHhhheeec-cCcccccchhhhhHHHHHHHHHHHHhHHHH
Confidence 8999 99999999999999999999999999999999999999999999 6 6777889999999999999999998665
Q ss_pred HhhhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 418 LSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGI 497 (622)
Q Consensus 418 ~~~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~ 497 (622)
-..| +.||||+|+|...+|++++|.++.++.++|+.++.+++|.+|+||++||.+++++||.++++++++++++.++..
T Consensus 512 ~~~~-~~~pv~~Khr~~~fY~p~A~al~s~l~~~P~~~i~~~vf~iI~Yfl~gl~~~A~rFF~~fL~lf~~~~~~s~lFr 590 (1391)
T KOG0065|consen 512 ALTF-QRLPVFYKHRDLSFYPPWAEALASTLLKIPSSFIESVVFVIITYFLIGLKRNAGRFFIQFLFLFLCQFCMSGLFR 590 (1391)
T ss_pred HHHH-hhcchHHHhhcccccChHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555 569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCC------C--
Q psy2519 498 MFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFD------N-- 569 (622)
Q Consensus 498 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~------~-- 569 (622)
++++++++...|+.++++.++.+.+++||+++.++||+||+|++|+||+.||+|+++.|||.+... .|.. |
T Consensus 591 ~ia~l~~t~~~An~~g~~~~L~i~m~~Gf~Ip~~~m~~W~~Wi~yinPl~Y~fesl~~NEF~~~~~-~c~p~gp~y~n~~ 669 (1391)
T KOG0065|consen 591 FIASLSRTLSIANLIGGILLLVLFMYGGFVIPKKDMPPWFRWIAYINPLMYAFESLMSNEFHGRRW-PCSPSGPAYDNIS 669 (1391)
T ss_pred HHHHhcchHHHHhhHhHHHHHHHHHHcceeeeccccchHHHHHHHHCHHHHHHHHHHHhhhhcccC-CCCCCCCcccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999864 8972 1
Q ss_pred -CCCCCcc----------ChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 570 -PDLPCLE----------DGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 570 -~~~~c~~----------~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
.+..|.. .|.++++ .+++.+.+.|++++|++++.++|.++..+++.+.+
T Consensus 670 ~~~~~c~~~~~~~G~~~v~g~~~l~~~~~y~~~~~Wr~~gillgf~v~f~~~~~ia~~yl~ 730 (1391)
T KOG0065|consen 670 IENKVCAATGATLGNDYVSGRDYLKVQYQYEYKWYWRNFGILLGFTVFFNFVFLIALEYLK 730 (1391)
T ss_pred cccccchhhccccCceEEecccccccccccccceeEeehhHHHHHHHHHHHHHHHHHHhcC
Confidence 1135632 4555553 46666899999999999999999999999987654
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-55 Score=415.26 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=199.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |+.++|+++|+++ ++|+.++|+|| ||||||||||+|.|+.+| .+|+|.++|+++
T Consensus 2 mi~i~~l~K~f--g~~~VLkgi~l~v-----~~Gevv~iiGp-----SGSGKSTlLRclN~LE~~---~~G~I~i~g~~~ 66 (240)
T COG1126 2 MIEIKNLSKSF--GDKEVLKGISLSV-----EKGEVVVIIGP-----SGSGKSTLLRCLNGLEEP---DSGSITVDGEDV 66 (240)
T ss_pred eEEEEeeeEEe--CCeEEecCcceeE-----cCCCEEEEECC-----CCCCHHHHHHHHHCCcCC---CCceEEECCEec
Confidence 57899999995 9999999999999 67788888866 489999999999999999 599999999877
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+|+++|+|||+.+|||++||.||+..+...-. +.++++.++++.++|+++||.+.+|.++..
T Consensus 67 ~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~--~~~k~eA~~~A~~lL~~VGL~~ka~~yP~q-------- 136 (240)
T COG1126 67 GDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK--KLSKAEAREKALELLEKVGLADKADAYPAQ-------- 136 (240)
T ss_pred cchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc--CCCHHHHHHHHHHHHHHcCchhhhhhCccc--------
Confidence 43 479999999999999999999999999865432 356788889999999999999999999555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||||+.+|+++|+|||||+|||....++++.+++||+ +|+|.|+|||++ ..+.+.+|||++|++|++
T Consensus 137 LSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~-eGmTMivVTHEM-~FAr~VadrviFmd~G~i 214 (240)
T COG1126 137 LSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMIIVTHEM-GFAREVADRVIFMDQGKI 214 (240)
T ss_pred cCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHH-cCCeEEEEechh-HHHHHhhheEEEeeCCEE
Confidence 999999999999999999999999999999999999999999999998 799999999996 688999999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+|++++
T Consensus 215 ie~g~p~~~f 224 (240)
T COG1126 215 IEEGPPEEFF 224 (240)
T ss_pred EEecCHHHHh
Confidence 9999998764
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-51 Score=396.46 Aligned_cols=218 Identities=23% Similarity=0.312 Sum_probs=199.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||||.| +...+++++||++ .+|+-++++|+ |||||||+||+|.++.+| ++|+|++||+++
T Consensus 1 MI~~~nvsk~y--~~~~av~~v~l~I-----~~gef~vliGp-----SGsGKTTtLkMINrLiep---t~G~I~i~g~~i 65 (309)
T COG1125 1 MIEFENVSKRY--GNKKAVDDVNLTI-----EEGEFLVLIGP-----SGSGKTTTLKMINRLIEP---TSGEILIDGEDI 65 (309)
T ss_pred Cceeeeeehhc--CCceeeeeeeEEe-----cCCeEEEEECC-----CCCcHHHHHHHHhcccCC---CCceEEECCeec
Confidence 57899999996 7888999999999 55666666655 599999999999999999 599999999999
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~ 170 (622)
.. ++|++||||-|+-.|||++||.||+++...+.. .++++.+++++++++.+||+. +++++ |++
T Consensus 66 ~~~d~~~LRr~IGYviQqigLFPh~Tv~eNIa~VP~L~~---w~k~~i~~r~~ELl~lvgL~p~~~~~Ry-----P~e-- 135 (309)
T COG1125 66 SDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLG---WDKERIKKRADELLDLVGLDPSEYADRY-----PHE-- 135 (309)
T ss_pred ccCCHHHHHHhhhhhhhhcccCCCccHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHhCCCHHHHhhcC-----chh--
Confidence 76 589999999999999999999999999988764 466778899999999999964 77888 555
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||.+||||+.+|++||+|||+++|||.++.++.+.++++.++.|+|||+||||. +|+.+++|||++|++|+
T Consensus 136 -LSGGQQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDi-dEA~kLadri~vm~~G~ 213 (309)
T COG1125 136 -LSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDI-DEALKLADRIAVMDAGE 213 (309)
T ss_pred -cCcchhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCH-HHHHhhhceEEEecCCe
Confidence 9999999999999999999999999999999999999999999999998899999999996 79999999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..++|++++
T Consensus 214 i~Q~~~P~~il 224 (309)
T COG1125 214 IVQYDTPDEIL 224 (309)
T ss_pred EEEeCCHHHHH
Confidence 99999999887
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-51 Score=408.61 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=202.5
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++++|+|.|..+ ...++++|||++ .+|+.+.++|.+ |||||||+|++.++.+| ++|+|.++|
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I-----~~GeI~GIIG~S-----GAGKSTLiR~iN~Le~P---tsG~v~v~G 67 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEI-----PKGEIFGIIGYS-----GAGKSTLLRLINLLERP---TSGSVFVDG 67 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEE-----cCCcEEEEEcCC-----CCcHHHHHHHHhccCCC---CCceEEEcC
Confidence 57899999998542 368999999999 678888888774 89999999999999999 599999999
Q ss_pred EecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 94 KPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+++.. ..|++||++||+++|+...||.||++|+.++.. .+++++++||.++++.+||++.+++++.+
T Consensus 68 ~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk~~~yP~q--- 141 (339)
T COG1135 68 QDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDKADRYPAQ--- 141 (339)
T ss_pred EecccCChHHHHHHHhhccEEeccccccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhhhccCchh---
Confidence 98864 378999999999999999999999999988865 56788999999999999999999999555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++||+|||||+|||.++..|+++|++++++.|.||+++||++ +.+.++||||.+|
T Consensus 142 -----LSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm-~Vvk~ic~rVavm 215 (339)
T COG1135 142 -----LSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEM-EVVKRICDRVAVL 215 (339)
T ss_pred -----cCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHhhhheEe
Confidence 9999999999999999999999999999999999999999999999998999999999996 7999999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+..+++
T Consensus 216 ~~G~lvE~G~v~~vF 230 (339)
T COG1135 216 DQGRLVEEGTVSEVF 230 (339)
T ss_pred eCCEEEEeccHHHhh
Confidence 999999999999875
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-50 Score=387.53 Aligned_cols=221 Identities=29% Similarity=0.394 Sum_probs=201.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...+++++|+++ +|++.+++++||+| .+|+.+.++||+ |+|||||||+|.|+++| .+|+|.++|+
T Consensus 6 ~~~I~vr~v~~~--fG~~~Ild~v~l~V-----~~Gei~~iiGgS-----GsGKStlLr~I~Gll~P---~~GeI~i~G~ 70 (263)
T COG1127 6 EPLIEVRGVTKS--FGDRVILDGVDLDV-----PRGEILAILGGS-----GSGKSTLLRLILGLLRP---DKGEILIDGE 70 (263)
T ss_pred cceEEEeeeeee--cCCEEEecCceeee-----cCCcEEEEECCC-----CcCHHHHHHHHhccCCC---CCCeEEEcCc
Confidence 346789999998 49999999999999 678888888774 89999999999999999 5999999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~ 166 (622)
++.. ++|+++|++||+.+||..|||.||+.|..+.+. +.+++..++.+..-|+.+||... ++.+ |
T Consensus 71 ~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV~eNVafplre~~--~lp~~~i~~lv~~KL~~VGL~~~~~~~~-----P 143 (263)
T COG1127 71 DIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHT--KLPESLIRELVLMKLELVGLRGAAADLY-----P 143 (263)
T ss_pred chhccCHHHHHHHHhheeEEeeccccccccchhHhhheehHhhc--cCCHHHHHHHHHHHHHhcCCChhhhhhC-----c
Confidence 9854 378999999999999999999999999876654 45778888899999999999877 7887 4
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.+ ||||||||+++||||+.||++|++||||+||||.++..+.++|+++.++.|.|+++||||. ++++.+|||+++|
T Consensus 144 sE---LSGGM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl-~s~~~i~Drv~~L 219 (263)
T COG1127 144 SE---LSGGMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDL-DSLLTIADRVAVL 219 (263)
T ss_pred hh---hcchHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECCh-HHHHhhhceEEEE
Confidence 44 9999999999999999999999999999999999999999999999998899999999996 6899999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
.+|+++++|+++++.
T Consensus 220 ~~gkv~~~Gt~~el~ 234 (263)
T COG1127 220 ADGKVIAEGTPEELL 234 (263)
T ss_pred eCCEEEEeCCHHHHH
Confidence 999999999999886
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-49 Score=386.23 Aligned_cols=209 Identities=29% Similarity=0.376 Sum_probs=187.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+++++|+++| |+..+|+++||++ .+|+.+.++|+ ||||||||||+|+|+.+| .+|+|.++|++
T Consensus 2 ~~l~i~~v~~~f--~~~~vl~~i~L~v-----~~GEfvsilGp-----SGcGKSTLLriiAGL~~p---~~G~V~~~g~~ 66 (248)
T COG1116 2 ALLEIEGVSKSF--GGVEVLEDINLSV-----EKGEFVAILGP-----SGCGKSTLLRLIAGLEKP---TSGEVLLDGRP 66 (248)
T ss_pred ceEEEEeeEEEe--CceEEeccceeEE-----CCCCEEEEECC-----CCCCHHHHHHHHhCCCCC---CCceEEECCcc
Confidence 357889999996 7799999999999 66767777765 589999999999999999 59999999999
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+ ......+|||||++.|+|++||.||+.++..... .++++++++++++|+.+||.+..|+++.. ||||
T Consensus 67 v-~~p~~~~~~vFQ~~~LlPW~Tv~~NV~l~l~~~~---~~~~e~~~~a~~~L~~VgL~~~~~~~P~q--------LSGG 134 (248)
T COG1116 67 V-TGPGPDIGYVFQEDALLPWLTVLDNVALGLELRG---KSKAEARERAKELLELVGLAGFEDKYPHQ--------LSGG 134 (248)
T ss_pred c-CCCCCCEEEEeccCcccchhhHHhhheehhhccc---cchHhHHHHHHHHHHHcCCcchhhcCccc--------cChH
Confidence 8 4456789999999999999999999999987754 35566777999999999999999999444 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTA 252 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv 252 (622)
|||||+|||||+.+|++||||||+++||+.++.++.+.+.+++++.++||++||||. +|+..++|||++|++ |++.
T Consensus 135 MrQRVaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi-~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 135 MRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDV-DEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHhhhCEEEEecCCCccee
Confidence 999999999999999999999999999999999999999999998899999999996 688889999999998 4453
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=408.94 Aligned_cols=220 Identities=23% Similarity=0.343 Sum_probs=201.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| |+..+++++||++ ++|+-++++||+ |||||||||+|+|+..| ++|+|.++|++
T Consensus 4 ~~l~i~~v~k~y--g~~~av~~isl~i-----~~Gef~~lLGPS-----GcGKTTlLR~IAGfe~p---~~G~I~l~G~~ 68 (352)
T COG3842 4 PALEIRNVSKSF--GDFTAVDDISLDI-----KKGEFVTLLGPS-----GCGKTTLLRMIAGFEQP---SSGEILLDGED 68 (352)
T ss_pred ceEEEEeeeeec--CCeeEEecceeee-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEE
Confidence 467899999996 7999999999999 667777777664 89999999999999999 59999999999
Q ss_pred cCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 96 VEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
++. ..+|.+|+|||+.+|||+|||+||++|+.+++. ...+++++++++++++.++|++.+++++.+ ||
T Consensus 69 i~~lpp~kR~ig~VFQ~YALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~~~R~p~q--------LS 138 (352)
T COG3842 69 ITDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGFADRKPHQ--------LS 138 (352)
T ss_pred CCCCChhhcccceeecCcccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhhhhhChhh--------hC
Confidence 987 468999999999999999999999999987442 235566888999999999999999999555 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||++||||+.+|++||||||.|+||..-+.++...++++.++.|.|.|++|||. +|+..++|||++|++|+|..
T Consensus 139 GGQqQRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDq-eEAl~msDrI~Vm~~G~I~Q 217 (352)
T COG3842 139 GGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ-EEALAMSDRIAVMNDGRIEQ 217 (352)
T ss_pred hHHHHHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHhhhccceEEccCCceee
Confidence 99999999999999999999999999999999999999999999998899999999995 79999999999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+|+++.
T Consensus 218 ~gtP~eiY 225 (352)
T COG3842 218 VGTPEEIY 225 (352)
T ss_pred cCCHHHHh
Confidence 99999885
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-48 Score=403.57 Aligned_cols=219 Identities=25% Similarity=0.349 Sum_probs=201.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+..+++++|+++ +.|+-.+++||+ |||||||||+|+|+.+| ++|+|.++|+++
T Consensus 3 ~i~l~~v~K~y--g~~~~l~~i~l~i-----~~Gef~vllGPS-----GcGKSTlLr~IAGLe~~---~~G~I~i~g~~v 67 (338)
T COG3839 3 ELELKNVRKSF--GSFEVLKDVNLDI-----EDGEFVVLLGPS-----GCGKSTLLRMIAGLEEP---TSGEILIDGRDV 67 (338)
T ss_pred EEEEeeeEEEc--CCceeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 46899999996 7655899999999 667777777664 89999999999999999 599999999999
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|.||+|||+.+|||+|||+||+.|+.+.+. .++++.+++|+++.+.++|++..|+++.. |||
T Consensus 68 t~l~P~~R~iamVFQ~yALyPhmtV~~Niaf~Lk~~~---~~k~ei~~rV~eva~~L~l~~lL~r~P~~--------LSG 136 (338)
T COG3839 68 TDLPPEKRGIAMVFQNYALYPHMTVYENIAFGLKLRG---VPKAEIDKRVKEVAKLLGLEHLLNRKPLQ--------LSG 136 (338)
T ss_pred CCCChhHCCEEEEeCCccccCCCcHHHHhhhhhhhCC---CchHHHHHHHHHHHHHcCChhHHhcCccc--------CCh
Confidence 87 367899999999999999999999999998864 46788899999999999999999999665 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|+++|||||.|+||+..+.++...|+++.++.|.|+|.+|||. .|+..++|||++|++|++...
T Consensus 137 GQrQRVAlaRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq-~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 137 GQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ-VEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hhHHHHHHHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCH-HHHHhhCCEEEEEeCCeeeec
Confidence 9999999999999999999999999999999999999999999988899999999995 789999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+|.++.+
T Consensus 216 g~p~ely~ 223 (338)
T COG3839 216 GTPLELYE 223 (338)
T ss_pred CChHHHhh
Confidence 99998863
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=378.49 Aligned_cols=208 Identities=31% Similarity=0.442 Sum_probs=183.1
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|..|. .++|+++||++ ++|+.++|+|| |||||||||++|+|+.+| ++|+|.++|++
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i-----~~Ge~vaI~Gp-----SGSGKSTLLniig~ld~p---t~G~v~i~g~d 68 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEI-----EAGEFVAIVGP-----SGSGKSTLLNLLGGLDKP---TSGEVLINGKD 68 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEE-----cCCCEEEEECC-----CCCCHHHHHHHHhcccCC---CCceEEECCEE
Confidence 56899999987665 57999999999 67777777766 489999999999999999 59999999998
Q ss_pred cCc-------c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-CccCCcCC
Q psy2519 96 VEG-------K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-TRIGSSSI 166 (622)
Q Consensus 96 ~~~-------~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-~~v~~~~~ 166 (622)
++. . .++.||||||+..|.|++||+||+.++..+... +..+..++++++++.+||.+..+ +++.+
T Consensus 69 ~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~---~~~~~~~~~~~l~~~lgl~~~~~~~~p~e--- 142 (226)
T COG1136 69 LTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGK---SAGRRKRAAEELLEVLGLEDRLLKKKPSE--- 142 (226)
T ss_pred cCcCCHHHHHHHHHHhEEEECccCCCCCCCCHHHHHHhHHHHcCC---ChhHHHHHHHHHHHhcCChhhhccCCchh---
Confidence 864 1 468899999999999999999999998766542 22255677889999999997766 76555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|+++|+||||++||+.++.+|++++++++++.|+|||++|||+ ++...|||++.|
T Consensus 143 -----LSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~--~lA~~~dr~i~l 215 (226)
T COG1136 143 -----LSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDP--ELAKYADRVIEL 215 (226)
T ss_pred -----cCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCH--HHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999987799999999996 788999999999
Q ss_pred cCCce
Q psy2519 247 ADSRT 251 (622)
Q Consensus 247 ~~G~i 251 (622)
.+|++
T Consensus 216 ~dG~~ 220 (226)
T COG1136 216 KDGKI 220 (226)
T ss_pred eCCee
Confidence 99994
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-47 Score=395.31 Aligned_cols=222 Identities=30% Similarity=0.383 Sum_probs=200.1
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++||++.| | ++.+|++||+++ ++|+.+.++|+| |||||||||+|+|+.+| ++|+|.++|++
T Consensus 4 ~i~~~~l~k~~--~~~~~~l~~vs~~i-----~~Gei~gllG~N-----GAGKTTllk~l~gl~~p---~~G~i~i~G~~ 68 (293)
T COG1131 4 VIEVRNLTKKY--GGDKTALDGVSFEV-----EPGEIFGLLGPN-----GAGKTTLLKILAGLLKP---TSGEILVLGYD 68 (293)
T ss_pred eeeecceEEEe--CCCCEEEeceeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEEcCEe
Confidence 45779999996 7 689999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
... +.++++|||+|++.++|.+||+|||.|.+.++.... ...+++++++++.+||.+..++++++ |
T Consensus 69 ~~~~~~~~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~---~~~~~~~~~~l~~~~L~~~~~~~~~~--------l 137 (293)
T COG1131 69 VVKEPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSK---EEAEERIEELLELFGLEDKANKKVRT--------L 137 (293)
T ss_pred CccCHHHHHhheEEEccCCCCCccccHHHHHHHHHHHhCCCh---hHHHHHHHHHHHHcCCchhhCcchhh--------c
Confidence 865 578899999999999999999999999999986432 44567899999999999877777777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|+|||||++||+||+++|++|||||||+||||.++.++.++|++++++.|+||+++||++ +++.++||||++|++|+++
T Consensus 138 S~G~kqrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l-~e~~~~~d~v~il~~G~~~ 216 (293)
T COG1131 138 SGGMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHIL-EEAEELCDRVIILNDGKII 216 (293)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcH-HHHHHhCCEEEEEeCCEEE
Confidence 999999999999999999999999999999999999999999999985448999999996 7899999999999999999
Q ss_pred EecChHHHHHHHH
Q psy2519 253 FIGSKDAALAFLE 265 (622)
Q Consensus 253 ~~G~~~~~~~~~~ 265 (622)
+.|+++++...+.
T Consensus 217 ~~g~~~~l~~~~~ 229 (293)
T COG1131 217 AEGTPEELKEKFG 229 (293)
T ss_pred EeCCHHHHHHhhc
Confidence 9999998766554
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-48 Score=372.11 Aligned_cols=222 Identities=26% Similarity=0.358 Sum_probs=197.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|+ |++++|++||+++ .+|+.++|+|++ |||||||||+|+|+..| .+|+|.+||.++
T Consensus 3 ~i~~~nl~k~yp-~~~~aL~~Vnl~I-----~~GE~VaiIG~S-----GaGKSTLLR~lngl~d~---t~G~i~~~g~~i 68 (258)
T COG3638 3 MIEVKNLSKTYP-GGHQALKDVNLEI-----NQGEMVAIIGPS-----GAGKSTLLRSLNGLVDP---TSGEILFNGVQI 68 (258)
T ss_pred eEEEeeeeeecC-CCceeeeeEeEEe-----CCCcEEEEECCC-----CCcHHHHHHHHhcccCC---CcceEEecccch
Confidence 578999999985 8889999999999 677777777664 89999999999999998 589999999887
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ++|+++||+||+++|.|.+||.||+..+..-+.+. ....++.+.++-+.|+++|+.+.+.++.++
T Consensus 69 ~~~~~k~lr~~r~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~- 147 (258)
T COG3638 69 TKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRAST- 147 (258)
T ss_pred hccchHHHHHHHHhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhcc-
Confidence 64 36899999999999999999999998864332210 112234556778999999999999999888
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||+|||+|||||+.+|+++|.|||+++|||.++.++++.|++++++.|.|||++.|+. +.+.++|||++
T Consensus 148 -------LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~v-dlA~~Y~~Rii 219 (258)
T COG3638 148 -------LSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQV-DLAKKYADRII 219 (258)
T ss_pred -------CCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechH-HHHHHHHhhhe
Confidence 9999999999999999999999999999999999999999999999998999999999996 68899999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
-|++|+++|+|+++++-
T Consensus 220 gl~~G~ivfDg~~~el~ 236 (258)
T COG3638 220 GLKAGRIVFDGPASELT 236 (258)
T ss_pred EecCCcEEEeCChhhhh
Confidence 99999999999998764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=383.02 Aligned_cols=221 Identities=25% Similarity=0.370 Sum_probs=198.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE--
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK-- 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~-- 94 (622)
++.++|+++. +|+.++++++++.+ ++|+.+.++|++ |||||||||+|+|+..| ++|.|.+||+
T Consensus 2 ~i~i~~~~~~--~~~~~a~~di~l~i-----~~Ge~vaLlGpS-----GaGKsTlLRiIAGLe~p---~~G~I~~~~~~l 66 (345)
T COG1118 2 SIRINNVKKR--FGAFGALDDISLDI-----KSGELVALLGPS-----GAGKSTLLRIIAGLETP---DAGRIRLNGRVL 66 (345)
T ss_pred ceeehhhhhh--cccccccccceeee-----cCCcEEEEECCC-----CCcHHHHHHHHhCcCCC---CCceEEECCEec
Confidence 4678899997 58999999999999 567777777665 89999999999999999 5999999999
Q ss_pred -ecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 -PVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 -~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
|.++ ...|+||||||+..||++|||.|||+|+.+.+. ...++.+++.++.++|+.+.|++..++++.+
T Consensus 67 ~D~~~~~~~~R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~la~ryP~Q-------- 137 (345)
T COG1118 67 FDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGLADRYPAQ-------- 137 (345)
T ss_pred cchhccchhhcceeEEEechhhcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccchhhcCchh--------
Confidence 5544 246889999999999999999999999987762 2335667888999999999999999998544
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||++||||+.+|++||||||+++||...+.++.+.|+++.++.|.|+++||||+ +|+.++||||++|++|+|
T Consensus 138 LSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~-eea~~ladrvvvl~~G~I 216 (345)
T COG1118 138 LSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQ-EEALELADRVVVLNQGRI 216 (345)
T ss_pred cChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCH-HHHHhhcceEEEecCCee
Confidence 9999999999999999999999999999999999999999999999987799999999996 799999999999999999
Q ss_pred EEecChHHHHH
Q psy2519 252 AFIGSKDAALA 262 (622)
Q Consensus 252 v~~G~~~~~~~ 262 (622)
...|+++|+.+
T Consensus 217 eqvg~p~ev~~ 227 (345)
T COG1118 217 EQVGPPDEVYD 227 (345)
T ss_pred eeeCCHHHHhc
Confidence 99999998853
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=358.48 Aligned_cols=213 Identities=24% Similarity=0.289 Sum_probs=191.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|.|..| .++|+++|+++ .+|+-..+.|+ ||||||||||+|.+..+| ++|+|.++|+++
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i-----~~Gef~fl~Gp-----SGAGKSTllkLi~~~e~p---t~G~i~~~~~dl 66 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHI-----PKGEFVFLTGP-----SGAGKSTLLKLIYGEERP---TRGKILVNGHDL 66 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEee-----cCceEEEEECC-----CCCCHHHHHHHHHhhhcC---CCceEEECCeec
Confidence 46889999999766 78999999999 45555555544 599999999999999999 599999999998
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+. .+||+||+||||..|.+..||+||++|+.+... .++.+.+++|.++|+.+||.+.++..+.+
T Consensus 67 ~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v~G---~~~~~i~~rV~~~L~~VgL~~k~~~lP~~------ 137 (223)
T COG2884 67 SRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIG---KPPREIRRRVSEVLDLVGLKHKARALPSQ------ 137 (223)
T ss_pred ccccccccchhhheeeeEeeeccccccchHhhhhhhhhhccC---CCHHHHHHHHHHHHHHhccchhhhcCccc------
Confidence 65 379999999999999999999999999987764 45677889999999999999999888444
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+||||++.+|++||.||||.+|||..+.+|++++.++++ .|+||++.||| ...+..+-.|++.|++|
T Consensus 138 --LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr-~GtTVl~ATHd-~~lv~~~~~rvl~l~~G 213 (223)
T COG2884 138 --LSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINR-LGTTVLMATHD-LELVNRMRHRVLALEDG 213 (223)
T ss_pred --cCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhh-cCcEEEEEecc-HHHHHhccCcEEEEeCC
Confidence 999999999999999999999999999999999999999999999998 89999999999 47888888999999999
Q ss_pred ceEEecC
Q psy2519 250 RTAFIGS 256 (622)
Q Consensus 250 ~iv~~G~ 256 (622)
+++.+..
T Consensus 214 rl~~d~~ 220 (223)
T COG2884 214 RLVRDES 220 (223)
T ss_pred EEEeccc
Confidence 9997654
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=384.16 Aligned_cols=221 Identities=24% Similarity=0.346 Sum_probs=197.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |++++++++|+++ .+|+.++|+||| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 2 ~L~~~~ls~~y--~~~~il~~ls~~i-----~~G~i~~iiGpN-----G~GKSTLLk~l~g~l~p---~~G~V~l~g~~i 66 (258)
T COG1120 2 MLEVENLSFGY--GGKPILDDLSFSI-----PKGEITGILGPN-----GSGKSTLLKCLAGLLKP---KSGEVLLDGKDI 66 (258)
T ss_pred eeEEEEEEEEE--CCeeEEecceEEe-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCC---CCCEEEECCCch
Confidence 46889999997 7889999999999 678888888887 79999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ++.+.+|||||+....+.+||+|-+.++..-+... ....++..+.+++.|+.+|+.+.+++.+.+
T Consensus 67 ~~~~~kelAk~ia~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~-------- 138 (258)
T COG1120 67 ASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDE-------- 138 (258)
T ss_pred hhcCHHHHhhhEEEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccc--------
Confidence 65 47899999999998889999999999985433211 112234455799999999999999999888
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||.|||||+.+|++|||||||+.||...+.+++++++++++++|+|||+++||+ +.+.++||++++|++|++
T Consensus 139 LSGGerQrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDl-N~A~ryad~~i~lk~G~i 217 (258)
T COG1120 139 LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDL-NLAARYADHLILLKDGKI 217 (258)
T ss_pred cChhHHHHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999987899999999997 688999999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+|++++
T Consensus 218 ~a~G~p~evl 227 (258)
T COG1120 218 VAQGTPEEVL 227 (258)
T ss_pred EeecCcchhc
Confidence 9999999775
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-47 Score=361.23 Aligned_cols=233 Identities=25% Similarity=0.336 Sum_probs=207.0
Q ss_pred CcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++.+++++| |+ ++++++|++++ +.|+.+.++|+| ||||||+||+|++++.| ++|.|+++|.+
T Consensus 1 Ml~v~~l~K~y--~~~v~AvrdVSF~a-----e~Gei~GlLG~N-----GAGKTT~LRmiatlL~P---~~G~v~idg~d 65 (245)
T COG4555 1 MLEVTDLTKSY--GSKVQAVRDVSFEA-----EEGEITGLLGEN-----GAGKTTLLRMIATLLIP---DSGKVTIDGVD 65 (245)
T ss_pred Ceeeeehhhhc--cCHHhhhhheeEEe-----ccceEEEEEcCC-----CCCchhHHHHHHHhccC---CCceEEEeecc
Confidence 57889999997 54 55999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
..+ ..|++||.++.+..++..||++|||.|.++++. +...+.+++++++.+.++|.++.|+++++ +
T Consensus 66 ~~~~p~~vrr~IGVl~~e~glY~RlT~rEnl~~Fa~L~~---l~~~~~kari~~l~k~l~l~~~~~rRv~~--------~ 134 (245)
T COG4555 66 TVRDPSFVRRKIGVLFGERGLYARLTARENLKYFARLNG---LSRKEIKARIAELSKRLQLLEYLDRRVGE--------F 134 (245)
T ss_pred cccChHHHhhhcceecCCcChhhhhhHHHHHHHHHHHhh---hhhhHHHHHHHHHHHHhChHHHHHHHHhh--------h
Confidence 865 479999999988899999999999999999875 45677788999999999999999999988 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|.||||||+|||||+++|++++|||||||||..++..+.+.++++.. +|++||++||.+ ++++++||||+++++|+++
T Consensus 135 S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~-egr~viFSSH~m-~EvealCDrvivlh~Gevv 212 (245)
T COG4555 135 STGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKN-EGRAVIFSSHIM-QEVEALCDRVIVLHKGEVV 212 (245)
T ss_pred chhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhc-CCcEEEEecccH-HHHHHhhheEEEEecCcEE
Confidence 99999999999999999999999999999999999999999999987 799999999996 7999999999999999999
Q ss_pred EecChHHHHHHHHhCCCCCCCCCChHHHHHHhh
Q psy2519 253 FIGSKDAALAFLESQGYPCPYGYNPADFLIKSL 285 (622)
Q Consensus 253 ~~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~~ 285 (622)
+.|+++++..-- ...|+.+.+...+
T Consensus 213 ~~gs~~~l~~r~--------~~~~le~~f~~~l 237 (245)
T COG4555 213 LEGSIEALDART--------VLRNLEEIFAFAL 237 (245)
T ss_pred EcCCHHHHHHHH--------hhcCHHHHHHHhh
Confidence 999999765321 1245555555544
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=356.47 Aligned_cols=221 Identities=22% Similarity=0.325 Sum_probs=191.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||++.| |+.++|++||+.+ .+++.++++|| ||||||||||++..... |+...+|+|.++|+
T Consensus 7 ~~~~~~l~~yY--g~~~aL~~i~l~i-----~~~~VTAlIGP-----SGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ 74 (253)
T COG1117 7 AIEVRDLNLYY--GDKHALKDINLDI-----PKNKVTALIGP-----SGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGK 74 (253)
T ss_pred eeEecceeEEE--CchhhhccCceec-----cCCceEEEECC-----CCcCHHHHHHHHHhhcccCcCceEEEEEEECCe
Confidence 46788999986 8999999999999 56667777766 48999999999998764 45678999999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCC
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~ 167 (622)
++-. ++|+++|+|||.+.-|| +|++||+.|+.+++... + ++..++|++.|+...|.+. .|+.-.+ +
T Consensus 75 ni~~~~~d~~~lRr~vGMVFQkPnPFp-~SIydNVayG~r~~g~~--~-~~ldeiVe~sLk~AaLWdEVKDrL~~s--a- 147 (253)
T COG1117 75 NIYDPKVDVVELRRRVGMVFQKPNPFP-MSIYDNVAYGLRLHGIK--D-KELDEIVESSLKKAALWDEVKDRLHKS--A- 147 (253)
T ss_pred eccCCCCCHHHHHHHheeeccCCCCCC-chHHHHHHHhHHhhccc--h-HHHHHHHHHHHHHhHhHHHhHHHhhCC--c-
Confidence 9854 47999999999999999 89999999999887632 2 6677889999999999654 4443222 2
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
.+||||||||++|||||+.+|+|||||||||+|||.++.+|-++|.+|++ .-|||+|||++ ..+.+.+|+..++.
T Consensus 148 --~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~--~yTIviVTHnm-qQAaRvSD~taFf~ 222 (253)
T COG1117 148 --LGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKK--KYTIVIVTHNM-QQAARVSDYTAFFY 222 (253)
T ss_pred --cCCChhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHh--ccEEEEEeCCH-HHHHHHhHhhhhhc
Confidence 34999999999999999999999999999999999999999999999985 68999999996 78999999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
.|++++.|++++++
T Consensus 223 ~G~LvE~g~T~~iF 236 (253)
T COG1117 223 LGELVEFGPTDKIF 236 (253)
T ss_pred ccEEEEEcCHHhhh
Confidence 99999999999775
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=366.89 Aligned_cols=221 Identities=21% Similarity=0.284 Sum_probs=197.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++|++|+|..+ .++++++|+++ ++|+.++++|+| |||||||+++|+|+++| .+|+|.++|.+
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i-----~~Ge~~~i~G~n-----GsGKSTL~~~l~GLl~p---~~G~v~~~g~~ 67 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEI-----EKGERVLLIGPN-----GSGKSTLLKLLNGLLKP---TSGEVLVDGLD 67 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCcCcC---CCCEEEECCee
Confidence 356789999998656 78999999999 677788888777 79999999999999999 58999999999
Q ss_pred cC--c---cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 96 VE--G---KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~--~---~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+. . ++|+++|||||++ ..+..-||.|.++|+..... .+.++.+++++++++.+|+.+.+++.+.+
T Consensus 68 ~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g---~~~~e~~~rv~~~l~~vgl~~~~~r~p~~------ 138 (235)
T COG1122 68 TSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLG---LPREEIEERVAEALELVGLEELLDRPPFN------ 138 (235)
T ss_pred ccchhhHHHhhcceEEEEECcccccccCcHHHHHhhchhhcC---CCHHHHHHHHHHHHHHcCchhhccCCccc------
Confidence 76 2 5899999999996 46667799999999986653 45567888999999999999999988665
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+||.+|+.+|++|+|||||+|||+..+.++++.+++++++.|+|+|++|||. +.+.+++||+++|++|
T Consensus 139 --LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~-~~~~~~ad~v~vl~~G 215 (235)
T COG1122 139 --LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDL-ELVLEYADRVVVLDDG 215 (235)
T ss_pred --cCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcH-HHHHhhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999986689999999996 7899999999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
+++++|+|.+++.
T Consensus 216 ~i~~~g~p~~i~~ 228 (235)
T COG1122 216 KILADGDPAEIFN 228 (235)
T ss_pred EEeecCCHHHHhh
Confidence 9999999987753
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-45 Score=384.55 Aligned_cols=220 Identities=22% Similarity=0.311 Sum_probs=195.2
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..+ ..++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i-----~~Gei~gIiG~s-----GaGKSTLlr~I~gl~~p---~~G~I~i~G~ 67 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHV-----PAGQIYGVIGAS-----GAGKSTLIRCVNLLERP---TSGSVIVDGQ 67 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCE
Confidence 46889999998532 357999999999 677788888776 89999999999999999 5899999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..|+.+||+||+..+++.+||+||+.++..... .++.+.++++.++++.+||.+..|+++++
T Consensus 68 ~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~e~l~~vgL~~~~~~~~~~---- 140 (343)
T TIGR02314 68 DLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEIKRKVTELLALVGLGDKHDSYPSN---- 140 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEECCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh----
Confidence 9853 147789999999999999999999999865432 24455667889999999999988988666
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||++||+.++.+++++|++++++.|.|||++||++ +.+.++||++++|+
T Consensus 141 ----LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~-~~v~~~~d~v~vl~ 215 (343)
T TIGR02314 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEM-DVVKRICDCVAVIS 215 (343)
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999985699999999996 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+++++.
T Consensus 216 ~G~iv~~g~~~~v~ 229 (343)
T TIGR02314 216 NGELIEQGTVSEIF 229 (343)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999998774
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=388.13 Aligned_cols=219 Identities=21% Similarity=0.275 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.|. |+.++|+++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~i~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~llG~s-----GsGKSTLLr~iaGl~~p---~~G~I~~~g~~i 68 (356)
T PRK11650 3 GLKLQAVRKSYD-GKTQVIKGIDLDV-----ADGEFIVLVGPS-----GCGKSTLLRMVAGLERI---TSGEIWIGGRVV 68 (356)
T ss_pred EEEEEeEEEEeC-CCCEEEeeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 468899999863 5678999999999 677778888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+..++++++++.+||.+..++++.+ |||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------LSg 137 (356)
T PRK11650 69 NELEPADRDIAMVFQNYALYPHMSVRENMAYGLKIRG---MPKAEIEERVAEAARILELEPLLDRKPRE--------LSG 137 (356)
T ss_pred CCCCHHHCCEEEEeCCccccCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhHhhCChhh--------CCH
Confidence 64 245789999999999999999999999876432 34455667899999999999999998766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++.|+|+|++|||+ .++.++||++++|++|+++..
T Consensus 138 Gq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~l~D~i~vl~~G~i~~~ 216 (356)
T PRK11650 138 GQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQ-VEAMTLADRVVVMNGGVAEQI 216 (356)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999999886699999999996 689999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 217 g~~~~~~ 223 (356)
T PRK11650 217 GTPVEVY 223 (356)
T ss_pred CCHHHHH
Confidence 9999875
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-45 Score=380.76 Aligned_cols=218 Identities=29% Similarity=0.380 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|.| |+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+++| .+|+|.++|.++
T Consensus 7 ~i~i~~l~k~~--~~~~~l~~vsl~i-----~~Gei~gllGpN-----GaGKSTLl~~l~Gl~~p---~~G~v~i~G~~~ 71 (306)
T PRK13537 7 PIDFRNVEKRY--GDKLVVDGLSFHV-----QRGECFGLLGPN-----GAGKTTTLRMLLGLTHP---DAGSISLCGEPV 71 (306)
T ss_pred eEEEEeEEEEE--CCeEEEecceEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEec
Confidence 57899999996 6788999999999 677788888887 89999999999999999 589999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++++|||+|++.+++.+||+||+.+.+..+. .+..+.+++++++++.++|.+..++.+++ ||
T Consensus 72 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 140 (306)
T PRK13537 72 PSRARHARQRVGVVPQFDNLDPDFTVRENLLVFGRYFG---LSAAAARALVPPLLEFAKLENKADAKVGE--------LS 140 (306)
T ss_pred ccchHHHHhcEEEEeccCcCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCchhh--------CC
Confidence 64 367889999999999999999999998776543 23344556788999999999989998877 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+++|++|+|||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||||++|++|++++
T Consensus 141 ~G~~qrl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~till~sH~l-~e~~~~~d~i~il~~G~i~~ 218 (306)
T PRK13537 141 GGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVIEEGRKIA 218 (306)
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 699999999996 68999999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 219 ~g~~~~l~~ 227 (306)
T PRK13537 219 EGAPHALIE 227 (306)
T ss_pred ECCHHHHHh
Confidence 999998753
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=386.18 Aligned_cols=218 Identities=22% Similarity=0.292 Sum_probs=196.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~~~g~~i 70 (351)
T PRK11432 6 FVVLKNITKRF--GSNTVIDNLNLTI-----KQGTMVTLLGPS-----GCGKTTVLRLVAGLEKP---TEGQIFIDGEDV 70 (351)
T ss_pred EEEEEeEEEEE--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 57889999996 6778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 71 ~~~~~~~r~ig~vfQ~~~lfp~~tv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~~gl~~~~~r~~~~--------LSg 139 (351)
T PRK11432 71 THRSIQQRDICMVFQSYALFPHMSLGENVGYGLKMLG---VPKEERKQRVKEALELVDLAGFEDRYVDQ--------ISG 139 (351)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCCHHHHHHHHHhHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCH
Confidence 65 246789999999999999999999999876542 34456677899999999999988888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++.++.|+|+|++|||+ +++.+++||+++|++|+++..
T Consensus 140 Gq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~e~~~laD~i~vm~~G~i~~~ 218 (351)
T PRK11432 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQ-SEAFAVSDTVIVMNKGKIMQI 218 (351)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 g~~~~~~ 225 (351)
T PRK11432 219 GSPQELY 225 (351)
T ss_pred cCHHHHH
Confidence 9999875
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-45 Score=363.99 Aligned_cols=219 Identities=28% Similarity=0.403 Sum_probs=187.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| +..++|+++|+++ .+|+.+.++||| |||||||+|+|.|+++| .+|+|.++|++
T Consensus 3 ~~i~v~nl~v~y--~~~~vl~~i~l~v-----~~G~~~~iiGPN-----GaGKSTLlK~iLGll~p---~~G~i~~~g~~ 67 (254)
T COG1121 3 PMIEVENLTVSY--GNRPVLEDISLSV-----EKGEITALIGPN-----GAGKSTLLKAILGLLKP---SSGEIKIFGKP 67 (254)
T ss_pred cEEEEeeeEEEE--CCEeeeeccEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCcC---CcceEEEcccc
Confidence 357899999997 4337999999999 677777788777 89999999999999999 59999999998
Q ss_pred cCcc-ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCC--CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEGK-FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKL--DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~~-~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~--~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.... -+.+||||||.. ..-..+||+|-+..+...+. -+... ++.++.++++|+++|+.+.+|+.+++
T Consensus 68 ~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~-~~d~~~v~~aL~~Vgm~~~~~r~i~~------- 139 (254)
T COG1121 68 VRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLN-KKDKEKVDEALERVGMEDLRDRQIGE------- 139 (254)
T ss_pred ccccccCCeEEEcCcccccCCCCCcCHHHHHHccCccccccccccc-HHHHHHHHHHHHHcCchhhhCCcccc-------
Confidence 8653 357899999954 22334699999988743322 11223 33467899999999999999999999
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||+|||-|||||+.+|++|+|||||+|+|+.++.++.++|++++++ |+||++||||+ ..+.+.||+|+.| +++
T Consensus 140 -LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-g~tIl~vtHDL-~~v~~~~D~vi~L-n~~ 215 (254)
T COG1121 140 -LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-GKTVLMVTHDL-GLVMAYFDRVICL-NRH 215 (254)
T ss_pred -cCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC-CCEEEEEeCCc-HHhHhhCCEEEEE-cCe
Confidence 9999999999999999999999999999999999999999999999985 99999999997 6899999999999 568
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 216 ~~~~G~~~~~~ 226 (254)
T COG1121 216 LIASGPPEEVL 226 (254)
T ss_pred eEeccChhhcc
Confidence 88999999875
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-45 Score=386.38 Aligned_cols=219 Identities=22% Similarity=0.319 Sum_probs=196.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~Gps-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~~ 68 (353)
T TIGR03265 4 YLSIDNIRKRF--GAFTALKDISLSV-----KKGEFVCLLGPS-----GCGKTTLLRIIAGLERQ---TAGTIYQGGRDI 68 (353)
T ss_pred EEEEEEEEEEe--CCeEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHCCCCC---CceEEEECCEEC
Confidence 47889999996 6677999999999 677788888776 89999999999999998 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++.+.+ |||
T Consensus 69 ~~~~~~~r~ig~v~Q~~~lfp~~tv~eNi~~~~~~~~---~~~~~~~~~~~~~l~~l~L~~~~~~~~~~--------LSg 137 (353)
T TIGR03265 69 TRLPPQKRDYGIVFQSYALFPNLTVADNIAYGLKNRG---MGRAEVAERVAELLDLVGLPGSERKYPGQ--------LSG 137 (353)
T ss_pred CCCCHHHCCEEEEeCCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCCchhhCChhh--------CCH
Confidence 64 346789999999999999999999999876432 34456677899999999999999988666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+.++.++.+.|+++.++.|.|+|++|||+ +++.+++||+++|++|++++.
T Consensus 138 Gq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~-~ea~~l~d~i~vl~~G~i~~~ 216 (353)
T TIGR03265 138 GQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQ-EEALSMADRIVVMNHGVIEQV 216 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999886699999999996 689999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++.+
T Consensus 217 g~~~~~~~ 224 (353)
T TIGR03265 217 GTPQEIYR 224 (353)
T ss_pred cCHHHHHh
Confidence 99998753
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=385.20 Aligned_cols=219 Identities=20% Similarity=0.299 Sum_probs=196.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee--eEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID--GDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~--G~I~~~G 93 (622)
+.++++||+++| |+..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+ |+|.++|
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~~~G~i~~~g 68 (362)
T TIGR03258 4 GGIRIDHLRVAY--GANTVLDDLSLEI-----EAGELLALIGKS-----GCGKTTLLRAIAGFVKA---AGLTGRIAIAD 68 (362)
T ss_pred eEEEEEEEEEEE--CCeEEEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCCEEEEECC
Confidence 357899999997 6678999999999 677788888776 89999999999999999 47 9999999
Q ss_pred EecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 94 KPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 94 ~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+++.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+
T Consensus 69 ~~~~~~~~~~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~~~~-------- 137 (362)
T TIGR03258 69 RDLTHAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQK---MPKADIAERVADALKLVGLGDAAAHLPAQ-------- 137 (362)
T ss_pred EECCCCCHHHCCEEEEECCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCCchhhCChhh--------
Confidence 99864 246789999999999999999999999876442 34455667899999999999999998766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-KKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++. |+|+|++|||+ +++.+++|||++|++|+
T Consensus 138 LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~-~ea~~l~dri~vl~~G~ 216 (362)
T TIGR03258 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQ-DDALTLADKAGIMKDGR 216 (362)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 99999999999999999999999999999999999999999999998754 89999999996 68899999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (362)
T TIGR03258 217 LAAHGEPQALY 227 (362)
T ss_pred EEEEcCHHHHH
Confidence 99999999875
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-45 Score=337.32 Aligned_cols=216 Identities=24% Similarity=0.368 Sum_probs=189.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.+++|.++| +..+- ..|+++ ..|+.+.|+|+ ||||||||||+|+|...| .+|+|++||++.
T Consensus 1 ~l~L~~V~~~y--~~~~~--~fdl~v-----~~ge~vAi~Gp-----SGaGKSTLLnLIAGF~~P---~~G~i~i~g~d~ 63 (231)
T COG3840 1 MLALDDVRFSY--GHLPM--RFDLTV-----PAGEIVAILGP-----SGAGKSTLLNLIAGFETP---ASGEILINGVDH 63 (231)
T ss_pred CccccceEEee--CcceE--EEEEee-----cCCcEEEEECC-----CCccHHHHHHHHHhccCC---CCceEEEcCeec
Confidence 46789999986 55443 345556 46777777766 489999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|=++++||+.+||.+|||.+|+.++..-.+ +.. .+.+++++.++.++||..+.++.+++ |||
T Consensus 64 t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L--kL~-a~~r~~v~~aa~~vGl~~~~~RLP~~--------LSG 132 (231)
T COG3840 64 TASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL--KLN-AEQREKVEAAAAQVGLAGFLKRLPGE--------LSG 132 (231)
T ss_pred CcCCcccCChhhhhhccccchhhhhhhhhcccCCccc--ccC-HHHHHHHHHHHHHhChhhHhhhCccc--------cCc
Confidence 76 467889999999999999999999999754332 122 45677899999999999999999666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||++||.|+.+-+||+||||+|+|||.-+.++..++.+++++++.|+++|||+| +++.+++|+++++++|||.+.
T Consensus 133 GqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~-~Da~~ia~~~~fl~~Gri~~~ 211 (231)
T COG3840 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHP-EDAARIADRVVFLDNGRIAAQ 211 (231)
T ss_pred hHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHHHHhhhceEEEeCCEEEee
Confidence 9999999999999999999999999999999999999999999998999999999998 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+.++.+
T Consensus 212 g~~~~~~ 218 (231)
T COG3840 212 GSTQELL 218 (231)
T ss_pred ccHHHHh
Confidence 9998664
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-44 Score=351.13 Aligned_cols=220 Identities=25% Similarity=0.321 Sum_probs=191.2
Q ss_pred CCcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++|++++|..+. .+++++||+++ .+|+.+.|+|. ||||||||.++|+|+.+| .+|+|.++|
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i-----~~Ge~lgivGe-----SGsGKSTL~r~l~Gl~~p---~~G~I~~~G 68 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEI-----ERGETLGIVGE-----SGSGKSTLARLLAGLEKP---SSGSILLDG 68 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEe-----cCCCEEEEEcC-----CCCCHHHHHHHHhcccCC---CCceEEECC
Confidence 3578999999973322 14999999999 67888888876 489999999999999999 599999999
Q ss_pred EecCc-----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcC
Q psy2519 94 KPVEG-----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSS 165 (622)
Q Consensus 94 ~~~~~-----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~ 165 (622)
++..+ .+++.+-+||||+ .+.|..||++.|.-+..... .++. .+++.++++.+||.+ .++++
T Consensus 69 ~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~---~~~~--~~~i~~~L~~VgL~~~~l~R~----- 138 (252)
T COG1124 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHG---LSKS--QQRIAELLDQVGLPPSFLDRR----- 138 (252)
T ss_pred cccCccccchhhccceeEEecCCccccCcchhHHHHHhhhhccCC---ccHH--HHHHHHHHHHcCCCHHHHhcC-----
Confidence 88765 3678999999997 69999999999988766532 2333 334899999999964 56777
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|++ ||||||||++|||||+.+|++|+||||||+||+..+.+|+++|.++.++.|.|.|++|||. ..+.++||||++
T Consensus 139 P~e---LSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl-~~v~~~cdRi~V 214 (252)
T COG1124 139 PHE---LSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDL-ALVEHMCDRIAV 214 (252)
T ss_pred chh---cChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcH-HHHHHHhhheee
Confidence 555 9999999999999999999999999999999999999999999999998899999999995 799999999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|++++.++.+++..
T Consensus 215 m~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 215 MDNGQIVEIGPTEELLS 231 (252)
T ss_pred eeCCeEEEeechhhhhc
Confidence 99999999999998763
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=347.76 Aligned_cols=218 Identities=25% Similarity=0.351 Sum_probs=194.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+..| |+.++|++||+++ ++|+.++++|+| |||||||||+|+|+.++ .+|+|.++|+|
T Consensus 2 ~mL~v~~l~~~Y--G~~~~L~gvsl~v-----~~Geiv~llG~N-----GaGKTTlLkti~Gl~~~---~~G~I~~~G~d 66 (237)
T COG0410 2 PMLEVENLSAGY--GKIQALRGVSLEV-----ERGEIVALLGRN-----GAGKTTLLKTIMGLVRP---RSGRIIFDGED 66 (237)
T ss_pred CceeEEeEeecc--cceeEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeeEEECCee
Confidence 467899999986 9999999999999 788888888888 79999999999999998 48999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~ 169 (622)
++. ..|+.++||||....||.|||+|||..++..+.. +...+..++++.+.+- |.+.++++.|+
T Consensus 67 it~~p~~~r~r~Gi~~VPegR~iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker~~~~aG~------ 136 (237)
T COG0410 67 ITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKERRNQRAGT------ 136 (237)
T ss_pred cCCCCHHHHHhCCeEeCcccccchhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHHhcCcccC------
Confidence 976 3689999999999999999999999998755421 1112223778888884 67888999888
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||.++|||||+.+|++|+|||||.||-|.-..+|.+.|++++++.|.||++|.++. ..+.+++||.++|.+|
T Consensus 137 --LSGGEQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~-~~Al~iaDr~yvle~G 213 (237)
T COG0410 137 --LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNA-RFALEIADRGYVLENG 213 (237)
T ss_pred --CChHHHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccH-HHHHHhhCEEEEEeCC
Confidence 9999999999999999999999999999999999999999999999986689999999995 6888999999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
+++++|+++++.
T Consensus 214 riv~~G~~~eL~ 225 (237)
T COG0410 214 RIVLSGTAAELL 225 (237)
T ss_pred EEEEecCHHHHh
Confidence 999999999875
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=381.80 Aligned_cols=218 Identities=19% Similarity=0.260 Sum_probs=194.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 14 ~L~l~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~LlGps-----GsGKSTLLr~IaGl~~p---~~G~I~~~g~~i 78 (375)
T PRK09452 14 LVELRGISKSF--DGKEVISNLDLTI-----NNGEFLTLLGPS-----GCGKTTVLRLIAGFETP---DSGRIMLDGQDI 78 (375)
T ss_pred eEEEEEEEEEE--CCeEEEeeeEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 36789999986 6678999999999 677778888776 89999999999999998 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||.||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 79 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~p~~--------LSg 147 (375)
T PRK09452 79 THVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQK---TPAAEITPRVMEALRMVQLEEFAQRKPHQ--------LSG 147 (375)
T ss_pred CCCCHHHCCEEEEecCcccCCCCCHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh--------CCH
Confidence 64 246789999999999999999999999865432 24455567889999999999999998666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ .++..++||+++|++|+++..
T Consensus 148 Gq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~-~ea~~laDri~vl~~G~i~~~ 226 (375)
T PRK09452 148 GQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQ-EEALTMSDRIVVMRDGRIEQD 226 (375)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999986699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 227 g~~~~i~ 233 (375)
T PRK09452 227 GTPREIY 233 (375)
T ss_pred cCHHHHH
Confidence 9999875
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-44 Score=379.36 Aligned_cols=220 Identities=25% Similarity=0.365 Sum_probs=194.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| |+..+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 3 L~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~i~g~~i~ 67 (353)
T PRK10851 3 IEIANIKKSF--GRTQVLNDISLDI-----PSGQMVALLGPS-----GSGKTTLLRIIAGLEHQ---TSGHIRFHGTDVS 67 (353)
T ss_pred EEEEEEEEEe--CCeEEEEEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEECC
Confidence 5789999986 6678999999999 677788888776 89999999999999998 5899999999986
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+|||||++.++|.+||+||+.|+.+.... ...++++..++++++++.++|.+..++++.+ |||
T Consensus 68 ~~~~~~r~i~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~--------LSg 139 (353)
T PRK10851 68 RLHARDRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQ--------LSG 139 (353)
T ss_pred CCCHHHCCEEEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhh--------CCH
Confidence 4 3457899999999999999999999998654211 1123455667899999999999988988766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++|||+ .++.++||||++|++|++++.
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~-~ea~~~~Dri~vl~~G~i~~~ 218 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQ-EEAMEVADRVVVMSQGNIEQA 218 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999885699999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 g~~~~i~ 225 (353)
T PRK10851 219 GTPDQVW 225 (353)
T ss_pred cCHHHHH
Confidence 9999875
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-44 Score=381.17 Aligned_cols=218 Identities=20% Similarity=0.264 Sum_probs=195.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 19 ~l~l~~v~~~~--~~~~~l~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~IaGl~~p---~~G~I~i~g~~i 83 (377)
T PRK11607 19 LLEIRNLTKSF--DGQHAVDDVSLTI-----YKGEIFALLGAS-----GCGKSTLLRMLAGFEQP---TAGQIMLDGVDL 83 (377)
T ss_pred eEEEEeEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 47789999986 6678999999999 677777787776 89999999999999999 589999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||.||+.|+.+.+. .++.+.+++++++++.++|.+..++++.+ |||
T Consensus 84 ~~~~~~~r~ig~vfQ~~~lfp~ltv~eNi~~~l~~~~---~~~~~~~~~v~~~l~~l~L~~~~~~~~~~--------LSg 152 (377)
T PRK11607 84 SHVPPYQRPINMMFQSYALFPHMTVEQNIAFGLKQDK---LPKAEIASRVNEMLGLVHMQEFAKRKPHQ--------LSG 152 (377)
T ss_pred CCCCHHHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCH
Confidence 64 357789999999999999999999999875432 24455667899999999999988888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||++||+..+.++.+.|+++.++.|.|+|++|||+ +++..++||+++|++|+++..
T Consensus 153 Gq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~laDri~vl~~G~i~~~ 231 (377)
T PRK11607 153 GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQ-EEAMTMAGRIAIMNRGKFVQI 231 (377)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEeCCEEEEE
Confidence 9999999999999999999999999999999999999999999876799999999996 688999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 232 g~~~~~~ 238 (377)
T PRK11607 232 GEPEEIY 238 (377)
T ss_pred cCHHHHH
Confidence 9999875
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=375.87 Aligned_cols=218 Identities=31% Similarity=0.362 Sum_probs=195.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+..+++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|+++
T Consensus 41 ~i~i~nl~k~y--~~~~~l~~is~~i-----~~Gei~gLlGpN-----GaGKSTLl~~L~Gl~~p---~~G~i~i~G~~~ 105 (340)
T PRK13536 41 AIDLAGVSKSY--GDKAVVNGLSFTV-----ASGECFGLLGPN-----GAGKSTIARMILGMTSP---DAGKITVLGVPV 105 (340)
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence 48899999996 7778999999999 678888888887 79999999999999999 489999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.+||+||++.+++.+||.||+.+....+. ....+..++++++++.++|.+..++.+++ ||
T Consensus 106 ~~~~~~~~~~ig~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~~~--------LS 174 (340)
T PRK13536 106 PARARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADARVSD--------LS 174 (340)
T ss_pred CcchHHHhccEEEEeCCccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhCCChhh--------CC
Confidence 64 367889999999999999999999998765542 22334456678899999999999999887 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+++|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||||++|++|++++
T Consensus 175 ~G~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~-~g~tilisSH~l-~e~~~~~d~i~il~~G~i~~ 252 (340)
T PRK13536 175 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLEAGRKIA 252 (340)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 699999999996 78999999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 253 ~g~~~~l~~ 261 (340)
T PRK13536 253 EGRPHALID 261 (340)
T ss_pred EcCHHHHHh
Confidence 999998764
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=358.11 Aligned_cols=218 Identities=26% Similarity=0.375 Sum_probs=189.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (235)
T cd03261 1 IELRGLTKSF--GGRTVLKGVDLDV-----RRGEILAIIGPS-----GSGKSTLLRLIVGLLRP---DSGEVLIDGEDIS 65 (235)
T ss_pred CeEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3688999986 6678999999999 678888888887 89999999999999998 5899999999874
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .+++.+|||+|++.+++.+||+||+.+...... ..+.++..++++++++.+||.+..++.+++
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (235)
T cd03261 66 GLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHT--RLSEEEIREIVLEKLEAVGLRGAEDLYPAE------- 136 (235)
T ss_pred ccChhhHHHHhcceEEEccCcccCCCCcHHHHHHHHHhhcc--CCCHHHHHHHHHHHHHHcCCchhhcCChhh-------
Confidence 3 246789999999999999999999998754321 123344456788999999998888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 137 -LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~-~~~~~~~d~v~~l~~G~ 214 (235)
T cd03261 137 -LSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDL-DTAFAIADRIAVLYDGK 214 (235)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhcCEEEEEECCe
Confidence 9999999999999999999999999999999999999999999999874589999999996 67888999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (235)
T cd03261 215 IVAEGTPEELR 225 (235)
T ss_pred EEEecCHHHHc
Confidence 99999988653
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-43 Score=377.14 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=193.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 4 l~i~~l~~~~--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLL~~iaGl~~p---~~G~I~~~g~~i~ 68 (369)
T PRK11000 4 VTLRNVTKAY--GDVVISKDINLDI-----HEGEFVVFVGPS-----GCGKSTLLRMIAGLEDI---TSGDLFIGEKRMN 68 (369)
T ss_pred EEEEEEEEEe--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 6789999986 6677999999999 677788888776 89999999999999998 5899999999986
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+|||+|++.++|.+||+||+.|+...+. .+..+.+++++++++.+||.+..++.+.+ ||||
T Consensus 69 ~~~~~~~~i~~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~lgL~~~~~~~~~~--------LSgG 137 (369)
T PRK11000 69 DVPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEEINQRVNQVAEVLQLAHLLDRKPKA--------LSGG 137 (369)
T ss_pred CCCHhHCCEEEEeCCcccCCCCCHHHHHHhHHhhcC---CCHHHHHHHHHHHHHHcCChhhhcCChhh--------CCHH
Confidence 4 245789999999999999999999999865432 23345567889999999999888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|+|++|||+ +++.++||++++|++|+++..|
T Consensus 138 q~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~-~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 138 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999875699999999996 6888999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+++++.
T Consensus 217 ~~~~i~ 222 (369)
T PRK11000 217 KPLELY 222 (369)
T ss_pred CHHHHH
Confidence 999875
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=346.83 Aligned_cols=221 Identities=25% Similarity=0.311 Sum_probs=199.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++ ||+..++++||+++ .+|+.+.+|||| |||||||+|+|+|..+| ++|+|.++|+++
T Consensus 4 lL~v~~l~k~--FGGl~Al~~Vsl~v-----~~Gei~~LIGPN-----GAGKTTlfNlitG~~~P---~~G~v~~~G~~i 68 (250)
T COG0411 4 LLEVRGLSKR--FGGLTAVNDVSLEV-----RPGEIVGLIGPN-----GAGKTTLFNLITGFYKP---SSGTVIFRGRDI 68 (250)
T ss_pred eeeeccceee--cCCEEEEeceeEEE-----cCCeEEEEECCC-----CCCceeeeeeecccccC---CCceEEECCccc
Confidence 4689999998 59999999999999 678888888888 79999999999999999 489999999999
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC--------Cc-cccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--------DR-RVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~--------~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
+. ..|..++--||...+|+.|||.||+..++..+. +. ....++.++++.++|+.+||.+.+|+..+
T Consensus 69 t~l~p~~iar~Gi~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~ 148 (250)
T COG0411 69 TGLPPHRIARLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAG 148 (250)
T ss_pred CCCCHHHHHhccceeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhh
Confidence 76 257888999999999999999999999865331 11 11345667889999999999999999998
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||+|||||+.|||||+++|++|+||||.+||.+..+.++.+.|++++++.|.||+++.||+ ..+..+|||
T Consensus 149 ~--------LsyG~qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM-~~Vm~l~dr 219 (250)
T COG0411 149 N--------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDM-KLVMGLADR 219 (250)
T ss_pred c--------CChhHhHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEecc-HHHhhhccE
Confidence 8 9999999999999999999999999999999999999999999999986789999999996 799999999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|+.|+++++|+|+++.
T Consensus 220 i~Vl~~G~~IAeG~P~eV~ 238 (250)
T COG0411 220 IVVLNYGEVIAEGTPEEVR 238 (250)
T ss_pred EEeccCCcCcccCCHHHHh
Confidence 9999999999999999886
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-44 Score=355.37 Aligned_cols=205 Identities=26% Similarity=0.315 Sum_probs=187.6
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-------c-cccc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------K-FRSA 103 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-------~-~r~~ 103 (622)
+..++++||++ ..|+.++|.|- ||||||||+|+|.++.+| ++|+|+++|+++.+ + .|++
T Consensus 41 vvGv~~~sl~v-----~~GeIfViMGL-----SGSGKSTLvR~~NrLiep---t~G~ilv~g~di~~~~~~~Lr~~Rr~~ 107 (386)
T COG4175 41 VVGVNDASLDV-----EEGEIFVIMGL-----SGSGKSTLVRLLNRLIEP---TRGEILVDGKDIAKLSAAELRELRRKK 107 (386)
T ss_pred EEeeccceeee-----cCCeEEEEEec-----CCCCHHHHHHHHhccCCC---CCceEEECCcchhcCCHHHHHHHHhhh
Confidence 44578889988 56666776655 589999999999999999 59999999999854 1 4688
Q ss_pred EEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH
Q psy2519 104 CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA 183 (622)
Q Consensus 104 igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA 183 (622)
+++|||+..|+|+.||.||..|+.+++. ++++++++++.++|+.+||....++++.+ |||||||||.+|
T Consensus 108 ~sMVFQ~FaLlPhrtVl~Nv~fGLev~G---v~~~er~~~a~~~l~~VgL~~~~~~yp~e--------LSGGMqQRVGLA 176 (386)
T COG4175 108 ISMVFQSFALLPHRTVLENVAFGLEVQG---VPKAEREERALEALELVGLEGYADKYPNE--------LSGGMQQRVGLA 176 (386)
T ss_pred hhhhhhhhccccchhHhhhhhcceeecC---CCHHHHHHHHHHHHHHcCchhhhhcCccc--------ccchHHHHHHHH
Confidence 9999999999999999999999988864 67888999999999999999999999555 999999999999
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 184 TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 184 ~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||+.+|+|||+|||+|+|||--+.++.+.|.+|.++.++|||++|||. +|+.++.|||.+|++|+++..|+|+|++
T Consensus 177 RAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDL-dEAlriG~rIaimkdG~ivQ~Gtp~eIl 253 (386)
T COG4175 177 RALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDL-DEALRIGDRIAIMKDGEIVQVGTPEEIL 253 (386)
T ss_pred HHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHHhccceEEEecCCeEEEeCCHHHHH
Confidence 9999999999999999999999999999999999988899999999996 7999999999999999999999999987
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=349.67 Aligned_cols=216 Identities=26% Similarity=0.343 Sum_probs=189.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~~~~~~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 65 (220)
T cd03265 1 IEVENLVKKY--GDFEAVRGVSFRV-----RRGEIFGLLGPN-----GAGKTTTIKMLTTLLKP---TSGRATVAGHDVV 65 (220)
T ss_pred CEEEEEEEEE--CCEEeeeceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecC
Confidence 3688999986 6678999999999 678888888887 89999999999999998 5999999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.++|.+..++++++ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 134 (220)
T cd03265 66 REPREVRRRIGIVFQDLSVDDELTGWENLYIHARLYG---VPGAERRERIDELLDFVGLLEAADRLVKT--------YSG 134 (220)
T ss_pred cChHHHhhcEEEecCCccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhh--------CCH
Confidence 3 356789999999999999999999998765432 22334456788999999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||+||+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.|||+++|++|+++..
T Consensus 135 G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~-~~~~~~~d~i~~l~~G~i~~~ 213 (220)
T cd03265 135 GMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYM-EEAEQLCDRVAIIDHGRIIAE 213 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999874589999999996 688889999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03265 214 GTPEEL 219 (220)
T ss_pred CChHHc
Confidence 987753
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-44 Score=338.19 Aligned_cols=219 Identities=24% Similarity=0.335 Sum_probs=198.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+.++|+.|+| ++.+|+++||+++ ++|+.+.++||| ||||||.+.++.|+.+| .+|+|.+||.++
T Consensus 4 ~L~a~~l~K~y--~kr~Vv~~Vsl~v-----~~GEiVGLLGPN-----GAGKTT~Fymi~Glv~~---d~G~i~ld~~di 68 (243)
T COG1137 4 TLVAENLAKSY--KKRKVVNDVSLEV-----NSGEIVGLLGPN-----GAGKTTTFYMIVGLVRP---DSGKILLDDEDI 68 (243)
T ss_pred EEEehhhhHhh--CCeeeeeeeeEEE-----cCCcEEEEECCC-----CCCceeEEEEEEEEEec---CCceEEECCccc
Confidence 46789999996 8899999999999 788888888887 79999999999999999 499999999999
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+. ..|..+||+||++..|..|||+||+......+.. ...+.+++++++++|+++++.|.++++..+
T Consensus 69 T~lPm~~RArlGigYLpQE~SIFr~LtV~dNi~~vlE~~~~-d~~~~~~~~~l~~LL~ef~i~hlr~~~a~s-------- 139 (243)
T COG1137 69 TKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREK-DLKKAERKEELDALLEEFHITHLRDSKAYS-------- 139 (243)
T ss_pred ccCChHHHhhcCcccccccchHhhcCcHHHHHHHHHhhhhc-chhHHHHHHHHHHHHHHhchHHHhcCcccc--------
Confidence 86 3578899999999999999999999988777642 123345666789999999999999999777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||+|+.|||||+.+|+.++||||++|.||.+..+|.++++.|++ .|..|+++-|+. .|...+|||.+++++|++
T Consensus 140 LSGGERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~-rgiGvLITDHNV-REtL~i~dRaYIi~~G~v 217 (243)
T COG1137 140 LSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKD-RGIGVLITDHNV-RETLDICDRAYIISDGKV 217 (243)
T ss_pred cccchHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHh-CCceEEEccccH-HHHHhhhheEEEEecCeE
Confidence 999999999999999999999999999999999999999999999998 799999999997 588899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
.++|+|+++.
T Consensus 218 la~G~p~ei~ 227 (243)
T COG1137 218 LAEGSPEEIV 227 (243)
T ss_pred EecCCHHHHh
Confidence 9999999886
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-43 Score=366.21 Aligned_cols=218 Identities=31% Similarity=0.378 Sum_probs=192.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 4 ~i~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~l~G~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (303)
T TIGR01288 4 AIDLVGVSKSY--GDKVVVNDLSFTI-----ARGECFGLLGPN-----GAGKSTIARMLLGMISP---DRGKITVLGEPV 68 (303)
T ss_pred EEEEEeEEEEe--CCeEEEcceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 46889999986 6678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.+||++|++.+++.+||+||+.+...... .+..+.+++++++++.++|.+..++.+++ ||
T Consensus 69 ~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~ll~~~~l~~~~~~~~~~--------LS 137 (303)
T TIGR01288 69 PSRARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFG---MSTREIEAVIPSLLEFARLESKADVRVAL--------LS 137 (303)
T ss_pred cccHHHHhhcEEEEeccccCCcCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCchhh--------CC
Confidence 53 357889999999999999999999987654432 22334455678899999999888888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||+||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++++
T Consensus 138 gG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~til~~sH~~-~~~~~~~d~i~~l~~G~i~~ 215 (303)
T TIGR01288 138 GGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLA-RGKTILLTTHFM-EEAERLCDRLCVLESGRKIA 215 (303)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 699999999996 68889999999999999999
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+++++..
T Consensus 216 ~g~~~~~~~ 224 (303)
T TIGR01288 216 EGRPHALID 224 (303)
T ss_pred EcCHHHHHh
Confidence 999998753
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-43 Score=371.30 Aligned_cols=220 Identities=21% Similarity=0.321 Sum_probs=193.1
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..+ +.++++++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i-----~~Gei~~iiG~n-----GsGKSTLlk~L~Gl~~p---~~G~I~~~g~ 67 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHI-----PAGEIFGVIGAS-----GAGKSTLIRCINLLERP---TSGRVLVDGQ 67 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCE
Confidence 36789999998422 467999999999 677788888777 89999999999999998 5899999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..++.+|||+|++.+++.+||+||+.+...... .++.+.+++++++++.+||.+..++.+.+
T Consensus 68 ~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~---- 140 (343)
T PRK11153 68 DLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAG---TPKAEIKARVTELLELVGLSDKADRYPAQ---- 140 (343)
T ss_pred ECCcCCHHHHHHHhcCEEEEeCCCccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh----
Confidence 8853 136789999999999999999999999865432 23344556789999999999888888766
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|+
T Consensus 141 ----LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~-~~i~~~~d~v~~l~ 215 (343)
T PRK11153 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEM-DVVKRICDRVAVID 215 (343)
T ss_pred ----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+++++.
T Consensus 216 ~G~i~~~g~~~~~~ 229 (343)
T PRK11153 216 AGRLVEQGTVSEVF 229 (343)
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999998774
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-43 Score=370.58 Aligned_cols=208 Identities=23% Similarity=0.328 Sum_probs=187.2
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cc----
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KF---- 100 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~---- 100 (622)
+|++.+++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.. .+
T Consensus 3 ~~~~~~l~~vs~~i-----~~Gei~~l~G~s-----GsGKSTLLr~L~Gl~~p---~~G~I~i~G~~i~~~~~~~~~~~r 69 (363)
T TIGR01186 3 TGGKKGVNDADLAI-----AKGEIFVIMGLS-----GSGKSTTVRMLNRLIEP---TAGQIFIDGENIMKQSPVELREVR 69 (363)
T ss_pred cCCceeEEeeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhCCCCC---CceEEEECCEECCcCCHHHHHHHH
Confidence 47788999999999 678888888776 89999999999999999 59999999999864 23
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++.+|||+|++.++|++||+||+.|...... .++++..+++.++++.+||++..++++.+ |||||||||
T Consensus 70 r~~i~~v~Q~~~l~~~~TV~eNi~~~~~~~~---~~~~~~~~~~~~~l~~vgL~~~~~~~p~~--------LSGGq~QRV 138 (363)
T TIGR01186 70 RKKIGMVFQQFALFPHMTILQNTSLGPELLG---WPEQERKEKALELLKLVGLEEYEHRYPDE--------LSGGMQQRV 138 (363)
T ss_pred hCcEEEEECCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhcCCchhhhCChhh--------CCHHHHHHH
Confidence 6789999999999999999999999876542 34455677899999999999888888766 999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
+|||||+.+|++|||||||++||+.++.++.+.+++++++.|+|||++|||+ +++.++||||++|++|+++..|+++++
T Consensus 139 ~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~-~ea~~~~drI~vl~~G~iv~~g~~~ei 217 (363)
T TIGR01186 139 GLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDL-DEAIRIGDRIVIMKAGEIVQVGTPDEI 217 (363)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 9999999999999999999999999999999999999875699999999996 688899999999999999999999987
Q ss_pred H
Q psy2519 261 L 261 (622)
Q Consensus 261 ~ 261 (622)
.
T Consensus 218 ~ 218 (363)
T TIGR01186 218 L 218 (363)
T ss_pred H
Confidence 5
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=341.68 Aligned_cols=221 Identities=21% Similarity=0.369 Sum_probs=207.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++ ||+..+++|+|+++ .+|+.+.++|+| ||||||++|+|.|+++| ++|+|.++|.++
T Consensus 2 ~L~ie~vtK~--Fg~k~av~~isf~v-----~~G~i~GllG~N-----GAGKTTtfRmILglle~---~~G~I~~~g~~~ 66 (300)
T COG4152 2 ALEIEGVTKS--FGDKKAVDNISFEV-----PPGEIFGLLGPN-----GAGKTTTFRMILGLLEP---TEGEITWNGGPL 66 (300)
T ss_pred ceEEecchhc--cCceeeecceeeee-----cCCeEEEeecCC-----CCCccchHHHHhccCCc---cCceEEEcCcch
Confidence 4689999998 59999999999999 688888888888 79999999999999999 599999999999
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+...+.+|||+|.+..|+|.+||.|.|.|.++++. +++++.+++++.+|+++++.....++|.+ ||.|+
T Consensus 67 ~~~~~~rIGyLPEERGLy~k~tv~dql~yla~LkG---m~~~e~~~~~~~wLer~~i~~~~~~kIk~--------LSKGn 135 (300)
T COG4152 67 SQEIKNRIGYLPEERGLYPKMTVEDQLKYLAELKG---MPKAEIQKKLQAWLERLEIVGKKTKKIKE--------LSKGN 135 (300)
T ss_pred hhhhhhhcccChhhhccCccCcHHHHHHHHHHhcC---CcHHHHHHHHHHHHHhccccccccchHHH--------hhhhh
Confidence 98888999999999999999999999999999975 67788889999999999999999999888 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
+|++.+-.+++++|++++||||+|||||.+.+.+-+.+.++++ +|.|||+++|.+ +.++++||++++|++|+.|.+|+
T Consensus 136 qQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~-~GatIifSsH~M-e~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 136 QQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE-EGATIIFSSHRM-EHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHh-cCCEEEEecchH-HHHHHHhhhhheecCCceEEecc
Confidence 9999999999999999999999999999999999999999998 799999999996 79999999999999999999999
Q ss_pred hHHHHHHHH
Q psy2519 257 KDAALAFLE 265 (622)
Q Consensus 257 ~~~~~~~~~ 265 (622)
.+++.+-+.
T Consensus 214 v~~ir~~~G 222 (300)
T COG4152 214 VEDIRRSFG 222 (300)
T ss_pred HHHHHHhcC
Confidence 999886443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=347.05 Aligned_cols=211 Identities=27% Similarity=0.369 Sum_probs=183.6
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 65 (213)
T cd03259 1 LELKGLSKTY--GSVRALDDLSLTV-----EPGEFLALLGPS-----GCGKTTLLRLIAGLERP---DSGEILIDGRDVT 65 (213)
T ss_pred CeeeeeEEEe--CCeeeecceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEcC
Confidence 3678999986 5577999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+||+||+.+...... ....+..++++++++.++|.+..++.+.+ ||||
T Consensus 66 ~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 134 (213)
T cd03259 66 GVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRG---VPKAEIRARVRELLELVGLEGLLNRYPHE--------LSGG 134 (213)
T ss_pred cCchhhccEEEEcCchhhccCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhcChhh--------CCHH
Confidence 4 245789999999999999999999998754321 12333456788999999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 135 ~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 135 QQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQ-EEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875589999999996 6788999999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-43 Score=347.89 Aligned_cols=209 Identities=23% Similarity=0.332 Sum_probs=181.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 67 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHI-----TKGEMVFLVGHS-----GAGKSTFLKLILGIEKP---TRGKIRFNGQDL 67 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEeh
Confidence 36789999997433357999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.++|++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 138 (216)
T TIGR00960 68 TRLRGREIPFLRRHIGMVFQDHRLLSDRTVYDNVAFPLRIIG---VPPRDANERVSAALEKVGLEGKAHALPMQ------ 138 (216)
T ss_pred hhcChhHHHHHHHhceEEecCccccccccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh------
Confidence 42 146789999999999999999999998765432 12334456788999999999888888666
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||++++|++|
T Consensus 139 --LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~l~~G 214 (216)
T TIGR00960 139 --LSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNR-RGTTVLVATHDI-NLVETYRHRTLTLSRG 214 (216)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999987 589999999996 6788899999999999
Q ss_pred ce
Q psy2519 250 RT 251 (622)
Q Consensus 250 ~i 251 (622)
++
T Consensus 215 ~i 216 (216)
T TIGR00960 215 RL 216 (216)
T ss_pred cC
Confidence 75
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=360.70 Aligned_cols=238 Identities=21% Similarity=0.264 Sum_probs=199.7
Q ss_pred CcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+++++||+++|..++ +++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~v~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g 67 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEV-----KKGSYTALIGHT-----GSGKSTLLQHLNGLLQP---TEGKVTVGD 67 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCcEEEECC
Confidence 467899999984332 35999999999 678888888887 89999999999999998 589999999
Q ss_pred EecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccC
Q psy2519 94 KPVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIG 162 (622)
Q Consensus 94 ~~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~ 162 (622)
+++.. ..++.+|||+|++ .+++ .||.||+.|+..... .++.+.++++.++++.+||. +..++.+.
T Consensus 68 ~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 143 (288)
T PRK13643 68 IVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-ETVLKDVAFGPQNFG---IPKEKAEKIAAEKLEMVGLADEFWEKSPF 143 (288)
T ss_pred EECccccccccHHHHHhhEEEEecCcchhccc-chHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCChhhccCCcc
Confidence 98741 2578899999986 4555 699999999865432 23455567889999999996 46677766
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++|||
T Consensus 144 ~--------LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~vtHd~-~~~~~~~dr 213 (288)
T PRK13643 144 E--------LSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQ-SGQTVVLVTHLM-DDVADYADY 213 (288)
T ss_pred c--------CCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999987 699999999996 678889999
Q ss_pred eeeecCCceEEecChHHHH---HHHHhCCCCCCCCCChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL---AFLESQGYPCPYGYNPADFL 281 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~~~n~~d~~ 281 (622)
|++|++|++++.|+++++. +.+...|+.+|.....++.+
T Consensus 214 i~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 255 (288)
T PRK13643 214 VYLLEKGHIISCGTPSDVFQEVDFLKAHELGVPKATHFADQL 255 (288)
T ss_pred EEEEECCEEEEECCHHHHHcCHHHHHHcCCCCChHHHHHHHH
Confidence 9999999999999999875 34556777777655555444
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=357.05 Aligned_cols=231 Identities=19% Similarity=0.302 Sum_probs=193.7
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEI-----EDGEFVGLIGHT-----GSGKSTLIQHLNGLLKP---TSGKIIIDGV 69 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CccEEEECCE
Confidence 67899999984322 47999999999 678888888887 89999999999999999 5999999999
Q ss_pred ecCc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--cccCCccCCcC
Q psy2519 95 PVEG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~~~ 165 (622)
++.. ..++.+|||||++. .+...||+||+.|+..... .++++..++++++++.+||. +..++.+..
T Consensus 70 ~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~-- 144 (287)
T PRK13637 70 DITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLG---LSEEEIENRVKRAMNIVGLDYEDYKDKSPFE-- 144 (287)
T ss_pred ECCCcCccHHHHhhceEEEecCchhccccccHHHHHHhHHHHCC---CCHHHHHHHHHHHHHHcCCCchhhccCCccc--
Confidence 9853 35678999999863 3345799999998764432 24455667789999999997 567777666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +++.++|||+++
T Consensus 145 ------LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~drv~~ 217 (287)
T PRK13637 145 ------LSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSM-EDVAKLADRIIV 217 (287)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 678889999999
Q ss_pred ecCCceEEecChHHHHH---HHHhCCCCCCC
Q psy2519 246 LADSRTAFIGSKDAALA---FLESQGYPCPY 273 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~---~~~~~g~~~p~ 273 (622)
|++|++++.|+++++.+ .+...|+..|.
T Consensus 218 l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 248 (287)
T PRK13637 218 MNKGKCELQGTPREVFKEVETLESIGLAVPQ 248 (287)
T ss_pred EECCEEEEECCHHHHHhCHHHHHHcCCCCCh
Confidence 99999999999998753 23344555443
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=362.77 Aligned_cols=208 Identities=27% Similarity=0.320 Sum_probs=185.8
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEE
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACG 105 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~ig 105 (622)
+|+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+++| .+|+|.++|+++.. ..++.+|
T Consensus 3 y~~~~~l~~vs~~i-----~~Ge~~~l~G~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~ 69 (302)
T TIGR01188 3 YGDFKAVDGVNFKV-----REGEVFGFLGPN-----GAGKTTTIRMLTTLLRP---TSGTARVAGYDVVREPRKVRRSIG 69 (302)
T ss_pred eCCeeEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcccCHHHHHhhcE
Confidence 36778999999999 678888888887 89999999999999998 58999999998754 3567899
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 106 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 106 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|++|++.+++.+||+||+.+.+..+. .+..+..++++++++.+||.+..++.+++ |||||||||+||+|
T Consensus 70 ~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~qrv~la~a 138 (302)
T TIGR01188 70 IVPQYASVDEDLTGRENLEMMGRLYG---LPKDEAEERAEELLELFELGEAADRPVGT--------YSGGMRRRLDIAAS 138 (302)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhCCchhh--------CCHHHHHHHHHHHH
Confidence 99999999999999999999776542 23344456789999999999888998777 99999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++++.|+++++.+
T Consensus 139 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~-~g~tvi~~sH~~-~~~~~~~d~v~~l~~G~i~~~g~~~~l~~ 213 (302)
T TIGR01188 139 LIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKE-EGVTILLTTHYM-EEADKLCDRIAIIDHGRIIAEGTPEELKR 213 (302)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEECCHHHHHH
Confidence 9999999999999999999999999999999987 599999999996 68999999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=350.65 Aligned_cols=220 Identities=25% Similarity=0.332 Sum_probs=189.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (239)
T cd03296 3 IEVRNVSKRF--GDFVALDDVSLDI-----PSGELVALLGPS-----GSGKTTLLRLIAGLERP---DSGTILFGGEDAT 67 (239)
T ss_pred EEEEeEEEEE--CCEEeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 5789999997 5577999999999 678888888887 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++||+|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+.+ |||
T Consensus 68 ~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 139 (239)
T cd03296 68 DVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQ--------LSG 139 (239)
T ss_pred cCCccccceEEEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhh--------CCH
Confidence 4 2356899999999999999999999987543211 0012233445688999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.
T Consensus 140 G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~l~~G~i~~~ 218 (239)
T cd03296 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQ-EEALEVADRVVVMNKGRIEQV 218 (239)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999999874589999999996 678889999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 ~~~~~~~ 225 (239)
T cd03296 219 GTPDEVY 225 (239)
T ss_pred cCHHHHh
Confidence 9988653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=326.75 Aligned_cols=218 Identities=23% Similarity=0.337 Sum_probs=193.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+.|.| |+..+|++|||+. .+|..+.|||. |||||||+||||.=+.+| ..|+|.+||+.+
T Consensus 6 ~l~v~dlHK~~--G~~eVLKGvSL~A-----~~GdVisIIGs-----SGSGKSTfLRCiN~LE~P---~~G~I~v~geei 70 (256)
T COG4598 6 ALEVEDLHKRY--GEHEVLKGVSLQA-----NAGDVISIIGS-----SGSGKSTFLRCINFLEKP---SAGSIRVNGEEI 70 (256)
T ss_pred ceehhHHHhhc--ccchhhcceeeec-----CCCCEEEEecC-----CCCchhHHHHHHHhhcCC---CCceEEECCeEE
Confidence 57889999985 9999999999998 56666677655 589999999999999999 489999999987
Q ss_pred Cc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 97 EG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 97 ~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.- .+|.+.|+|||+.+|+++|||.||+.-+...-+ ..++.+..++++.+|+++|+.+..|.
T Consensus 71 ~~k~~~~G~l~~ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVL--g~~k~ea~e~Ae~~L~kVGi~ek~~~ 148 (256)
T COG4598 71 RLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVL--GVSKAEAIERAEKYLAKVGIAEKADA 148 (256)
T ss_pred EeeeCCCCCeeeCCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhh--cCCHHHHHHHHHHHHHHhCchhhhhc
Confidence 31 257789999999999999999999987653322 24677888999999999999999998
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
++.. |||||+||++|||||+.+|+++++|||||+|||.-.-++++.+++||+ +|+|.+++||.+ ..+.+.
T Consensus 149 YP~~--------LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAe-EgrTMv~VTHEM-~FAR~V 218 (256)
T COG4598 149 YPAH--------LSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAE-EGRTMVVVTHEM-GFARDV 218 (256)
T ss_pred Cccc--------cCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHH-hCCeEEEEeeeh-hHHHhh
Confidence 8555 999999999999999999999999999999999999999999999998 799999999996 688899
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
..+|++|++|.|-.+|+|++++
T Consensus 219 ss~v~fLh~G~iEE~G~P~qvf 240 (256)
T COG4598 219 SSHVIFLHQGKIEEEGPPEQVF 240 (256)
T ss_pred hhheEEeecceecccCChHHHh
Confidence 9999999999999999999875
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-42 Score=348.54 Aligned_cols=219 Identities=26% Similarity=0.348 Sum_probs=188.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (236)
T cd03219 1 LEVRGLTKRF--GGLVALDDVSFSV-----RPGEIHGLIGPN-----GAGKTTLFNLISGFLRP---TSGSVLFDGEDIT 65 (236)
T ss_pred CeeeeeEEEE--CCEEEecCceEEe-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCceEEECCEECC
Confidence 3678999986 5677999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc-------ccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-------VKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~-------~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
. . .++.++|++|++.+++.+||+||+.+......... ....+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 143 (236)
T cd03219 66 GLPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGE-- 143 (236)
T ss_pred CCCHHHHHhcCEEEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhh--
Confidence 4 1 24679999999999999999999998764332110 01233456788999999999888888766
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++
T Consensus 144 ------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~vsH~~-~~~~~~~d~i~~ 215 (236)
T cd03219 144 ------LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRE-RGITVLLVEHDM-DVVMSLADRVTV 215 (236)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 216 l~~G~i~~~~~~~~~~ 231 (236)
T cd03219 216 LDQGRVIAEGTPDEVR 231 (236)
T ss_pred EeCCEEEeecCHHHhc
Confidence 9999999999988763
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-42 Score=361.84 Aligned_cols=216 Identities=23% Similarity=0.326 Sum_probs=193.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| |+..+++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~~l~~is~~i-----~~Gei~~l~G~N-----GaGKTTLl~~l~Gl~~~---~~G~i~i~g~~~~ 67 (301)
T TIGR03522 3 IRVSSLTKLY--GTQNALDEVSFEA-----QKGRIVGFLGPN-----GAGKSTTMKIITGYLPP---DSGSVQVCGEDVL 67 (301)
T ss_pred EEEEEEEEEE--CCEEEEEEeEEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 6789999996 6788999999999 678888888887 79999999999999998 5899999999885
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+||++|++.+++.+||.||+.+.+.++. .+.++..++++++++.+||.+..++.+++ |||
T Consensus 68 ~~~~~~~~~ig~~~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS~ 136 (301)
T TIGR03522 68 QNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAGIYG---MKGQLLKQRVEEMIELVGLRPEQHKKIGQ--------LSK 136 (301)
T ss_pred cChHHHHhceEEecCCCCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCchhh--------CCH
Confidence 4 357889999999999999999999998876543 23344456788999999999989998777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||+||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||+++|++|++++.
T Consensus 137 G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiii~sH~l-~~~~~~~d~i~~l~~G~i~~~ 213 (301)
T TIGR03522 137 GYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK--DKTIILSTHIM-QEVEAICDRVIIINKGKIVAD 213 (301)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999999963 69999999996 689999999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 214 g~~~~~~~ 221 (301)
T TIGR03522 214 KKLDELSA 221 (301)
T ss_pred CCHHHHHH
Confidence 99998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-43 Score=320.71 Aligned_cols=211 Identities=24% Similarity=0.330 Sum_probs=188.5
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+++++++++...+ +.++|++|+|.+ ++|+.+.|+|++ ||||||||-+++|+..| .+|+|.+.|+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v-----~~Ge~vaiVG~S-----GSGKSTLl~vlAGLd~~---ssGeV~l~G~ 72 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVV-----KRGETVAIVGPS-----GSGKSTLLAVLAGLDDP---SSGEVRLLGQ 72 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEe-----cCCceEEEEcCC-----CCcHHhHHHHHhcCCCC---CCceEEEcCc
Confidence 56899999987544 478999999999 788888888764 89999999999999999 5999999999
Q ss_pred ecCc-------c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG-------K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-------~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.+ . ..+++|||||...|.|+||..||++.++.++.. +..+.+..+.++|+.+||.+..+.+++.
T Consensus 73 ~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge---~~~~~~~~A~~lL~~vGLg~Rl~HyP~q--- 146 (228)
T COG4181 73 PLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVALPLELRGE---SSADSRAGAKALLEAVGLGKRLTHYPAQ--- 146 (228)
T ss_pred chhhcCHHHHHHhhccceeEEEEeeeccccchhhhhccchhhhcCC---ccccHHHHHHHHHHHhCcccccccCccc---
Confidence 9864 1 458899999999999999999999999988763 2233456678999999999999988555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+||||++..|++||.||||.+||..+..+|.+++-.++++.|+|.|+||||| .+...|||.+-|
T Consensus 147 -----LSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~--~LA~Rc~R~~r~ 219 (228)
T COG4181 147 -----LSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDP--QLAARCDRQLRL 219 (228)
T ss_pred -----cCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCH--HHHHhhhheeee
Confidence 9999999999999999999999999999999999999999999999998999999999997 677899999999
Q ss_pred cCCceEE
Q psy2519 247 ADSRTAF 253 (622)
Q Consensus 247 ~~G~iv~ 253 (622)
.+|+++.
T Consensus 220 ~~G~l~~ 226 (228)
T COG4181 220 RSGRLVE 226 (228)
T ss_pred ecceecc
Confidence 9999975
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=342.88 Aligned_cols=211 Identities=22% Similarity=0.328 Sum_probs=184.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~v~~~g~~~~ 65 (213)
T cd03301 1 VELENVTKRF--GNVTALDDLNLDI-----ADGEFVVLLGPS-----GCGKTTTLRMIAGLEEP---TSGRIYIGGRDVT 65 (213)
T ss_pred CEEEeeEEEE--CCeeeeeceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 3678999986 5568999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+||+||+.+...... ...++.+++++++++.+|+.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 134 (213)
T cd03301 66 DLPPKDRDIAMVFQNYALYPHMTVYDNIAFGLKLRK---VPKDEIDERVREVAELLQIEHLLDRKPKQ--------LSGG 134 (213)
T ss_pred cCCcccceEEEEecChhhccCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHHhCChhh--------CCHH
Confidence 4 235679999999999999999999998754432 22344456788999999999888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 135 ~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~-~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 135 QRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQ-VEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999875589999999996 6888899999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=344.20 Aligned_cols=215 Identities=27% Similarity=0.351 Sum_probs=185.0
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++|++++|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~ 67 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSV-----EEGEFVALVGPS-----GCGKSTLLRIIAGLERP---TSGEVLVDGEP 67 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEE
Confidence 36789999873211 67999999999 677788888887 89999999999999988 58999999998
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+.. .++.++||+|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+.+ ||||
T Consensus 68 ~~~-~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 135 (220)
T cd03293 68 VTG-PGPDRGYVFQQDALLPWLTVLDNVALGLELQG---VPKAEARERAEELLELVGLSGFENAYPHQ--------LSGG 135 (220)
T ss_pred Ccc-ccCcEEEEecccccccCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCCccc--------CCHH
Confidence 753 46789999999999999999999998764432 12233456788999999998888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAF 253 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~ 253 (622)
||||++|||||+.+|+++||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|+ +|+++.
T Consensus 136 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~~~G~i~~ 214 (220)
T cd03293 136 MRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDI-DEAVFLADRVVVLSARPGRIVA 214 (220)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCCCEEEE
Confidence 999999999999999999999999999999999999999999765689999999996 57888999999999 799998
Q ss_pred ecChH
Q psy2519 254 IGSKD 258 (622)
Q Consensus 254 ~G~~~ 258 (622)
.++.+
T Consensus 215 ~~~~~ 219 (220)
T cd03293 215 EVEVD 219 (220)
T ss_pred EEEec
Confidence 87653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=347.05 Aligned_cols=218 Identities=23% Similarity=0.311 Sum_probs=189.5
Q ss_pred CcccCCccccccccce----eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVGSV----QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~----~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||++.| ++. ++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 1 ~i~~~~l~~~~--~~~~~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~ 65 (233)
T cd03258 1 MIELKNVSKVF--GDTGGKVTALKDVSLSV-----PKGEIFGIIGRS-----GAGKSTLIRCINGLERP---TSGSVLVD 65 (233)
T ss_pred CeEEecceEEc--cCCCCceeeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEEC
Confidence 35789999997 443 7999999999 678888888877 89999999999999998 58999999
Q ss_pred CEecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 93 GKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 93 G~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
|+++.. ..++.++|++|++.+++.+|++||+.+....+. ....+..+.++++++.++|.+..++.+.+
T Consensus 66 g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-- 140 (233)
T cd03258 66 GTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAG---VPKAEIEERVLELLELVGLEDKADAYPAQ-- 140 (233)
T ss_pred CEEcccCCHHHHHHHHhheEEEccCcccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhcChhh--
Confidence 998753 136789999999999999999999998754432 22333456788999999999888888666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++
T Consensus 141 ------LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~-~~~~~~~d~i~~ 213 (233)
T cd03258 141 ------LSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEM-EVVKRICDRVAV 213 (233)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 678889999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 214 l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 214 MEKGEVVEEGTVEEVF 229 (233)
T ss_pred EECCEEEEecCHHHHh
Confidence 9999999999887653
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-42 Score=358.01 Aligned_cols=230 Identities=20% Similarity=0.256 Sum_probs=192.6
Q ss_pred cccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..+ ..++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSI-----PSGSYVAIIGHT-----GSGKSTLLQHLNGLLQP---TSGTVTIGER 69 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 5789999998432 256999999999 678888888777 89999999999999998 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+|||+|++ .++ ..||.||+.|+..... .+..+.+++++++++.+||. +..++.+.+
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~-~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (290)
T PRK13634 70 VITAGKKNKKLKPLRKKVGIVFQFPEHQLF-EETVEKDICFGPMNFG---VSEEDAKQKAREMIELVGLPEELLARSPFE 145 (290)
T ss_pred ECccccccchHHHHHhhEEEEeeCchhhhh-hhhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCChhhhhCCccc
Confidence 8741 3567899999986 355 4699999998764332 23344556789999999997 567887666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|.|||++||++ +++.++|||+
T Consensus 146 --------LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~-~~~~~~~drv 216 (290)
T PRK13634 146 --------LSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSM-EDAARYADQI 216 (290)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH---HHHHhCCCCCCC
Q psy2519 244 ILLADSRTAFIGSKDAAL---AFLESQGYPCPY 273 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 273 (622)
++|++|++++.|+++++. ..+...+...|.
T Consensus 217 ~~l~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~ 249 (290)
T PRK13634 217 VVMHKGTVFLQGTPREIFADPDELEAIGLDLPE 249 (290)
T ss_pred EEEECCEEEEECCHHHHhcCHHHHHHCCCCCCH
Confidence 999999999999998874 234444555443
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-42 Score=353.86 Aligned_cols=231 Identities=20% Similarity=0.261 Sum_probs=195.1
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++|..+ ..++|+++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~ 70 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHV-----KQGEWLSIIGHN-----GSGKSTTVRLIDGLLEA---ESGQIIIDGDL 70 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence 57899999998432 246999999999 677788888777 89999999999999998 59999999999
Q ss_pred cCc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+|||+|++ .+++.+||+||+.|+..... .++++..++++++++.+||.+..++.+.+
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------- 140 (279)
T PRK13650 71 LTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG---IPHEEMKERVNEALELVGMQDFKEREPAR------- 140 (279)
T ss_pred CCcCcHHHHHhhceEEEcChHHhcccccHHHHHHhhHHhCC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc-------
Confidence 854 3567899999997 47788899999998754321 23445566789999999999888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|++++++.|+|||++||++ +++ ..|||+++|++|+
T Consensus 141 -LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~-~~~-~~~dri~~l~~G~ 217 (279)
T PRK13650 141 -LSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDL-DEV-ALSDRVLVMKNGQ 217 (279)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875599999999996 566 5899999999999
Q ss_pred eEEecChHHHHH---HHHhCCCCCCC
Q psy2519 251 TAFIGSKDAALA---FLESQGYPCPY 273 (622)
Q Consensus 251 iv~~G~~~~~~~---~~~~~g~~~p~ 273 (622)
++..|+++++.. .+...++..|.
T Consensus 218 i~~~g~~~~~~~~~~~~~~~~~~~~~ 243 (279)
T PRK13650 218 VESTSTPRELFSRGNDLLQLGLDIPF 243 (279)
T ss_pred EEEECCHHHHHcChHHHHHcCCCCcH
Confidence 999999987652 34445555443
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=362.45 Aligned_cols=222 Identities=18% Similarity=0.310 Sum_probs=191.3
Q ss_pred CcccCCccccccc-----------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce
Q psy2519 17 NEEVPNVDFSEIV-----------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII 85 (622)
Q Consensus 17 ~~~~~~~~~~~~~-----------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~ 85 (622)
.++++||+++|.. +..++++++|+++ ++|+.+.++|+| |||||||+++|+|+++| .
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~lvG~s-----GsGKSTLlk~i~Gl~~p---~ 74 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRL-----YEGETLGVVGES-----GCGKSTFARAIIGLVKA---T 74 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHCCCCC---C
Confidence 4789999999853 1367999999999 677788888776 89999999999999998 4
Q ss_pred eeEEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-c
Q psy2519 86 DGDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-N 155 (622)
Q Consensus 86 ~G~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~ 155 (622)
+|+|.++|+++.. .+++.++||+|++ .++|.+||.||+.+......+ ..++++.++++.++++.+||. +
T Consensus 75 ~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~-~~~~~~~~~~~~~~l~~vgl~~~ 153 (331)
T PRK15079 75 DGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHP-KLSRQEVKDRVKAMMLKVGLLPN 153 (331)
T ss_pred CcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHcCCChH
Confidence 8999999999853 2467899999997 689999999999987544311 124455667888999999994 4
Q ss_pred ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 156 ~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
..++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.++.++|++++++.|.|+|++|||+ ..
T Consensus 154 ~~~~~p~~--------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl-~~ 224 (331)
T PRK15079 154 LINRYPHE--------FSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL-AV 224 (331)
T ss_pred HhcCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HH
Confidence 66777555 9999999999999999999999999999999999999999999999875699999999996 68
Q ss_pred HHhhccceeeecCCceEEecChHHHH
Q psy2519 236 LIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 236 i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+.++||||++|.+|++++.|+++++.
T Consensus 225 ~~~~~dri~vl~~G~ive~g~~~~i~ 250 (331)
T PRK15079 225 VKHISDRVLVMYLGHAVELGTYDEVY 250 (331)
T ss_pred HHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 88899999999999999999998775
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=345.84 Aligned_cols=216 Identities=24% Similarity=0.336 Sum_probs=188.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 65 (232)
T cd03218 1 LRAENLSKRY--GKRKVVNGVSLSV-----KQGEIVGLLGPN-----GAGKTTTFYMIVGLVKP---DSGKILLDGQDIT 65 (232)
T ss_pred CeEEEEEEEe--CCEEeeccceeEe-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3688999987 5667999999999 677788888887 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. . .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+++.+..++.+.+ |
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 134 (232)
T cd03218 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRG---LSKKEREEKLEELLEEFHITHLRKSKASS--------L 134 (232)
T ss_pred cCCHhHHHhccEEEecCCccccccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh--------C
Confidence 3 1 34679999999999999999999998754332 12333455788999999999888888766 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|+++
T Consensus 135 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~ 212 (232)
T cd03218 135 SGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKD-RGIGVLITDHNV-RETLSITDRAYIIYEGKVL 212 (232)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987 689999999996 6889999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 213 ~~~~~~~~~ 221 (232)
T cd03218 213 AEGTPEEIA 221 (232)
T ss_pred EEeCHHHhh
Confidence 999988653
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=343.51 Aligned_cols=216 Identities=27% Similarity=0.376 Sum_probs=187.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNV-----YKGEIFGLLGHN-----GAGKTTTLKMLTGELRP---TSGTAYINGYSIR 67 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3678999987433377999999999 677788888887 89999999999999998 5999999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.+|||+|++.+++.+||+||+.+...... .+..+..++++++++.++|.+..++.+++ |||
T Consensus 68 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 136 (220)
T cd03263 68 TDRKAARQSLGYCPQFDALFDELTVREHLRFYARLKG---LPKSEIKEEVELLLRVLGLTDKANKRART--------LSG 136 (220)
T ss_pred cchHHHhhhEEEecCcCCccccCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhChhhh--------CCH
Confidence 4 356789999999999999999999998765432 12333456788999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+.||++++|++|+++..
T Consensus 137 G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~ 213 (220)
T cd03263 137 GMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRK--GRSIILTTHSM-DEAEALCDRIAIMSDGKLRCI 213 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEcCCH-HHHHHhcCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999975 48999999997 578889999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 214 ~~~~~~ 219 (220)
T cd03263 214 GSPQEL 219 (220)
T ss_pred CCHHHc
Confidence 988754
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=343.65 Aligned_cols=210 Identities=27% Similarity=0.340 Sum_probs=184.1
Q ss_pred cccCCccccccccce----eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 18 EEVPNVDFSEIVGSV----QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~----~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++||++.| ++. ++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|
T Consensus 2 l~~~~v~~~~--~~~~~~~~il~~~sl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g 66 (218)
T cd03266 2 ITADALTKRF--RDVKKTVQAVDGVSFTV-----KPGEVTGLLGPN-----GAGKTTTLRMLAGLLEP---DAGFATVDG 66 (218)
T ss_pred eEEEEEEEec--CCCCccceeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEEECC
Confidence 5789999997 333 7999999999 677788888777 89999999999999998 589999999
Q ss_pred EecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 94 KPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 94 ~~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+++.. .+++.+||++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++
T Consensus 67 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (218)
T cd03266 67 FDVVKEPAEARRRLGFVSDSTGLYDRLTARENLEYFAGLYG---LKGDELTARLEELADRLGMEELLDRRVGG------- 136 (218)
T ss_pred EEcccCHHHHHhhEEEecCCcccCcCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHHhhhhhh-------
Confidence 98754 356789999999999999999999998755432 22344556788999999999888888777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.+++|++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 213 (218)
T cd03266 137 -FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA-LGKCILFSTHIM-QEVERLCDRVVVLHRGR 213 (218)
T ss_pred -cCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999976 699999999996 68889999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++.|
T Consensus 214 i~~~~ 218 (218)
T cd03266 214 VVYEG 218 (218)
T ss_pred EeecC
Confidence 98754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=370.42 Aligned_cols=220 Identities=24% Similarity=0.280 Sum_probs=192.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |++++++++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 3 ~L~~~nls~~y--~~~~vL~~vs~~i-----~~Geiv~liGpN-----GaGKSTLLk~LaGll~p---~sG~I~l~G~~i 67 (402)
T PRK09536 3 MIDVSDLSVEF--GDTTVLDGVDLSV-----REGSLVGLVGPN-----GAGKTTLLRAINGTLTP---TAGTVLVAGDDV 67 (402)
T ss_pred eEEEeeEEEEE--CCEEEEEeeEEEE-----CCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 57889999986 6788999999999 678888888887 79999999999999999 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ++++++|||+|++.+++.+||+||+.++...+... .....+.+++++++++.+||.+..++.+.+
T Consensus 68 ~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~-------- 139 (402)
T PRK09536 68 EALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTS-------- 139 (402)
T ss_pred CcCCHHHHhcceEEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhh--------
Confidence 54 36788999999999999999999999864321100 001123456789999999999988988777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+++|++|||||||+|||+.++.+++++|+++++ +|+|||+++|++ +++.++|||+++|++|++
T Consensus 140 LSgGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~-~g~TIIivsHdl-~~~~~~adrii~l~~G~i 217 (402)
T PRK09536 140 LSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVD-DGKTAVAAIHDL-DLAARYCDELVLLADGRV 217 (402)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 689999999996 788899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 218 v~~G~~~ev~ 227 (402)
T PRK09536 218 RAAGPPADVL 227 (402)
T ss_pred EEecCHHHHh
Confidence 9999999753
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-42 Score=340.68 Aligned_cols=210 Identities=28% Similarity=0.431 Sum_probs=183.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~v~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (210)
T cd03269 1 LEVENVTKRF--GRVTALDDISFSV-----EKGEIFGLLGPN-----GAGKTTTIRMILGIILP---DSGEVLFDGKPLD 65 (210)
T ss_pred CEEEEEEEEE--CCEEEEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCCchh
Confidence 3678999986 5678999999999 677778888777 89999999999999988 5999999999876
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+|+.+..++.+.+ ||||||
T Consensus 66 ~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 134 (210)
T cd03269 66 IAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKG---LKKEEARRRIDEWLERLELSEYANKRVEE--------LSKGNQ 134 (210)
T ss_pred HHHHccEEEeccCCcCCcCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCChHHHhCcHhh--------CCHHHH
Confidence 5556789999999999999999999998765432 12334456788999999998888887666 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||++||++|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|++++.|
T Consensus 135 qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 135 QKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELAR-AGKTVILSTHQM-ELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999999999987 589999999996 6788899999999999998764
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=346.81 Aligned_cols=220 Identities=22% Similarity=0.326 Sum_probs=186.7
Q ss_pred cccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++||+++| ++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~--~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 65 (241)
T cd03256 1 IEVENLSKTY--PNGKKALKDVSLSI-----NPGEFVALIGPS-----GAGKSTLLRCLNGLVEP---TSGSVLIDGTDI 65 (241)
T ss_pred CEEeeEEEec--CCccEEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEEECCEec
Confidence 3578999987 44 67999999999 677888888777 89999999999999988 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-----CccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.++|++|++.+++.+||+||+.+...... .......+..++++++++.++|.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 144 (241)
T cd03256 66 NKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQ- 144 (241)
T ss_pred cccCHhHHHHHHhccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCccc-
Confidence 53 246789999999999999999999987542110 00011123345688999999998888887666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||+++
T Consensus 145 -------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~~~~d~v~ 216 (241)
T cd03256 145 -------LSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV-DLAREYADRIV 216 (241)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEE
Confidence 9999999999999999999999999999999999999999999999875689999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 217 GLKDGRIVFDGPPAELT 233 (241)
T ss_pred EEECCEEEeecCHHHhh
Confidence 99999999999988753
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=351.69 Aligned_cols=219 Identities=21% Similarity=0.348 Sum_probs=189.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 71 (269)
T PRK11831 7 LVDMRGVSFTR--GNRCIFDNISLTV-----PRGKITAIMGPS-----GIGKTTLLRLIGGQIAP---DHGEILFDGENI 71 (269)
T ss_pred eEEEeCeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEc
Confidence 46899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.++|++|+..+++.+||.||+.+....... .+..+..+++.++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------ 143 (269)
T PRK11831 72 PAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQ--LPAPLLHSTVMMKLEAVGLRGAAKLMPSE------ 143 (269)
T ss_pred cccChhhHHHHhhcEEEEecccccCCCCCHHHHHHHHHHHccC--CCHHHHHHHHHHHHHHcCChhhhhCChhh------
Confidence 53 1356799999999999999999999886432211 12333455678899999999888888776
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|
T Consensus 144 --LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~~d~v~~l~~G 220 (269)
T PRK11831 144 --LSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDV-PEVLSIADHAYIVADK 220 (269)
T ss_pred --CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhhCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875589999999996 6888999999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (269)
T PRK11831 221 KIVAHGSAQALQ 232 (269)
T ss_pred EEEEeCCHHHHh
Confidence 999999988664
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=345.86 Aligned_cols=217 Identities=24% Similarity=0.332 Sum_probs=188.2
Q ss_pred cccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++||+++| ++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 l~~~~l~~~~--~~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 65 (242)
T cd03295 1 IEFENVTKRY--GGGKKAVNNLNLEI-----AKGEFLVLIGPS-----GSGKTTTMKMINRLIEP---TSGEIFIDGEDI 65 (242)
T ss_pred CEEEEEEEEe--CCcceEeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCeEc
Confidence 3678999986 44 67999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++.+||+||+.+...... ....+..+++.++++.+||.+ ..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~------- 135 (242)
T cd03295 66 REQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLK---WPKEKIRERADELLALVGLDPAEFADRYPHE------- 135 (242)
T ss_pred CcCChHHhhcceEEEccCccccCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcHHHHhcChhh-------
Confidence 53 356789999999999999999999998755432 223344567889999999985 67777666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+++|++++|++|+
T Consensus 136 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~-~~~~~~~d~i~~l~~G~ 213 (242)
T cd03295 136 -LSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDI-DEAFRLADRIAIMKNGE 213 (242)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999874589999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 214 i~~~~~~~~~~ 224 (242)
T cd03295 214 IVQVGTPDEIL 224 (242)
T ss_pred EEEecCHHHHH
Confidence 99999987653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=357.32 Aligned_cols=231 Identities=19% Similarity=0.221 Sum_probs=192.6
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+++| .+|+|.++|+
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~v~iiG~n-----GsGKSTLl~~L~Gl~~p---~~G~i~~~g~ 69 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEI-----NQGEFIAIIGQT-----GSGKTTFIEHLNALLLP---DTGTIEWIFK 69 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEEece
Confidence 67899999984322 36899999999 678888888887 89999999999999998 4899999987
Q ss_pred ecC----------------------------ccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHH
Q psy2519 95 PVE----------------------------GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145 (622)
Q Consensus 95 ~~~----------------------------~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~ 145 (622)
+.. ...++.+|||||++ ..+...||+||+.|+..... .++++..++++
T Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~---~~~~~~~~~~~ 146 (305)
T PRK13651 70 DEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMG---VSKEEAKKRAA 146 (305)
T ss_pred ecccccccccccccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcC---CCHHHHHHHHH
Confidence 641 13567899999985 33445799999998765432 34455567889
Q ss_pred HHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 146 SLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 146 ~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
++++.+||. +..++.+.+ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|
T Consensus 147 ~~l~~~gL~~~~~~~~~~~--------LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~t 217 (305)
T PRK13651 147 KYIELVGLDESYLQRSPFE--------LSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNK-QGKT 217 (305)
T ss_pred HHHHHcCCChhhhhCChhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCE
Confidence 999999996 677888666 999999999999999999999999999999999999999999999986 6999
Q ss_pred EEEEeccCcHHHHhhccceeeecCCceEEecChHHHH---HHHHhCCCCCCCC
Q psy2519 225 VLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL---AFLESQGYPCPYG 274 (622)
Q Consensus 225 vi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~~ 274 (622)
||++|||+ +.+.+.|||+++|++|++++.|+++++. +.+...+...|..
T Consensus 218 iiivtHd~-~~~~~~adrv~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~~ 269 (305)
T PRK13651 218 IILVTHDL-DNVLEWTKRTIFFKDGKIIKDGDTYDILSDNKFLIENNMEPPKL 269 (305)
T ss_pred EEEEeeCH-HHHHHhCCEEEEEECCEEEEECCHHHHhcCHHHHHHCCCCCChH
Confidence 99999996 6788999999999999999999999875 2334455554443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-42 Score=348.62 Aligned_cols=221 Identities=24% Similarity=0.287 Sum_probs=186.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~~-~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 66 (243)
T TIGR02315 1 MLEVENLSKVYP-NGKQALKNINLNI-----NPGEFVAIIGPS-----GAGKSTLLRCINRLVEP---SSGSILLEGTDI 66 (243)
T ss_pred CeEEEeeeeecC-CCcceeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CccEEEECCEEh
Confidence 357899999873 2567999999999 677788888776 89999999999999998 589999999987
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-----CccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-----DRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-----~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. .+++.+|||+|++.+++.+||+||+.++..... .......+.+++++++++.+||.+..++.+.+
T Consensus 67 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 145 (243)
T TIGR02315 67 TKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQ- 145 (243)
T ss_pred hhCCHHHHHHHHhheEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCccc-
Confidence 53 146789999999999999999999987532100 00011223456788999999998888888666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||+++
T Consensus 146 -------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~-~~~~~~~d~v~ 217 (243)
T TIGR02315 146 -------LSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV-DLAKKYADRIV 217 (243)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 9999999999999999999999999999999999999999999999875589999999996 67888999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|++++.|+++++
T Consensus 218 ~l~~G~i~~~~~~~~~ 233 (243)
T TIGR02315 218 GLKAGEIVFDGAPSEL 233 (243)
T ss_pred EEECCEEEecCCHHHh
Confidence 9999999999988764
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=351.09 Aligned_cols=217 Identities=23% Similarity=0.283 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~~-~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 69 (274)
T PRK13647 4 IIEVEDLHFRYK-DGTKALKGLSLSI-----PEGSKTALLGPN-----GAGKSTLLLHLNGIYLP---QRGRVKVMGREV 69 (274)
T ss_pred eEEEEEEEEEeC-CCCeeeeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 467999999873 3467999999999 678888888877 89999999999999998 589999999988
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. .++..||.||+.|+..... .++.+.+++++++++.+||.+..++.+.+
T Consensus 70 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-------- 138 (274)
T PRK13647 70 NAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMG---LDKDEVERRVEEALKAVRMWDFRDKPPYH-------- 138 (274)
T ss_pred CCCCHHHHHhhEEEEecChhhhhccCcHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCChhh--------
Confidence 53 34678999999863 4556899999998754321 23344456788999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++|||+++|++|++
T Consensus 139 LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tili~tH~~-~~~~~~~d~i~~l~~G~i 216 (274)
T PRK13647 139 LSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHN-QGKTVIVATHDV-DLAAEWADQVIVLKEGRV 216 (274)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 678889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
++.|+++++
T Consensus 217 ~~~g~~~~~ 225 (274)
T PRK13647 217 LAEGDKSLL 225 (274)
T ss_pred EEECCHHHh
Confidence 999998754
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=350.16 Aligned_cols=219 Identities=21% Similarity=0.260 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GaGKSTLl~~i~G~~~p---~~G~i~~~g~~i 71 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSV-----YEGEWVAIVGHN-----GSGKSTLAKLLNGLLLP---EAGTITVGGMVL 71 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 47899999997433467999999999 677788888777 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+||++|++ .+++..||.||+.+...... ...++..++++++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~-------- 140 (279)
T PRK13635 72 SEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIG---VPREEMVERVDQALRQVGMEDFLNREPHR-------- 140 (279)
T ss_pred CcCcHHHHhhheEEEEeCHHHhcccccHHHHHhhhHhhCC---CCHHHHHHHHHHHHHHcCChhhhhCCccc--------
Confidence 64 3567899999997 47778899999998754432 23344566789999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .|||+++|++|++
T Consensus 141 LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~-~~~~-~~d~i~~l~~G~i 218 (279)
T PRK13635 141 LSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDL-DEAA-QADRVIVMNKGEI 218 (279)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCH-HHHH-cCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 5665 5999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 219 ~~~g~~~~~~ 228 (279)
T PRK13635 219 LEEGTPEEIF 228 (279)
T ss_pred EEECCHHHHh
Confidence 9999988765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-39 Score=394.94 Aligned_cols=221 Identities=22% Similarity=0.290 Sum_probs=197.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|.|..|++++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 928 ~L~I~nLsK~y~~~~k~aL~~lsl~I-----~~Gei~aLLG~N-----GAGKSTLLkiLaGLl~P---tsG~I~i~G~dI 994 (2272)
T TIGR01257 928 GVCVKNLVKIFEPSGRPAVDRLNITF-----YENQITAFLGHN-----GAGKTTTLSILTGLLPP---TSGTVLVGGKDI 994 (2272)
T ss_pred eEEEEeEEEEecCCCceEEEeeEEEE-----cCCcEEEEECCC-----CChHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 56789999998545678999999999 678888888887 89999999999999999 599999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..|+.+||++|++.+++.+||+||+.|.++++. .+.++.+++++++++.+||.+.+|+.+++ ||
T Consensus 995 ~~~~~~~r~~IG~~pQ~~~L~~~LTV~E~L~f~~~lkg---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~--------LS 1063 (2272)
T TIGR01257 995 ETNLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKG---RSWEEAQLEMEAMLEDTGLHHKRNEEAQD--------LS 1063 (2272)
T ss_pred cchHHHHhhcEEEEecCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CC
Confidence 64 367889999999999999999999999877653 23344556789999999999999999877 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||+||+||+.+|+++||||||+|||+.++++++++|++++ +|+|||++||++ +++..+|||+++|++|+++.
T Consensus 1064 GGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~--~g~TIIltTHdm-dea~~laDrI~iL~~GkL~~ 1140 (2272)
T TIGR01257 1064 GGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYR--SGRTIIMSTHHM-DEADLLGDRIAIISQGRLYC 1140 (2272)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEE
Confidence 999999999999999999999999999999999999999999994 489999999996 68889999999999999999
Q ss_pred ecChHHHHHHH
Q psy2519 254 IGSKDAALAFL 264 (622)
Q Consensus 254 ~G~~~~~~~~~ 264 (622)
.|++.++.+.+
T Consensus 1141 ~Gs~~~Lk~~~ 1151 (2272)
T TIGR01257 1141 SGTPLFLKNCF 1151 (2272)
T ss_pred ecCHHHHHHhc
Confidence 99999887654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-42 Score=340.57 Aligned_cols=208 Identities=28% Similarity=0.380 Sum_probs=178.3
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||+++|..++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i-----~~G~~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~ 67 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSI-----EKGEFVAIVGPS-----GSGKSTLLNILGGLDRP---TSGEVRVDGTD 67 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEE-----cCCCEEEEEcCC-----CCCHHHHHHHHhCCcCC---CceeEEECCEe
Confidence 36889999873221 67999999999 678888888887 89999999999999998 58999999998
Q ss_pred cCc-c-------ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 96 VEG-K-------FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 96 ~~~-~-------~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+.. . .++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 140 (218)
T cd03255 68 ISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAG---VPKKERRERAEELLERVGLGDRLNHYPSE---- 140 (218)
T ss_pred hhhcchhHHHHHHhhcEEEEeeccccCCCCcHHHHHHHHHhhcC---CCHHHHHHHHHHHHHHcCCchhhhcChhh----
Confidence 753 1 24679999999999999999999999765432 12233456788999999998888888766
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .||++++|+
T Consensus 141 ----LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~-~~d~v~~l~ 214 (218)
T cd03255 141 ----LSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAE-YADRIIELR 214 (218)
T ss_pred ----cCHHHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCH-HHHh-hhcEEEEee
Confidence 9999999999999999999999999999999999999999999999874589999999996 5665 999999999
Q ss_pred CCce
Q psy2519 248 DSRT 251 (622)
Q Consensus 248 ~G~i 251 (622)
+|++
T Consensus 215 ~G~i 218 (218)
T cd03255 215 DGKI 218 (218)
T ss_pred CCcC
Confidence 9974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=346.64 Aligned_cols=218 Identities=24% Similarity=0.312 Sum_probs=188.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (250)
T PRK11264 3 AIEVKNLVKKF--HGQTVLHGIDLEV-----KPGEVVAIIGPS-----GSGKTTLLRCINLLEQP---EAGTIRVGDITI 67 (250)
T ss_pred cEEEeceEEEE--CCeeeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEc
Confidence 47899999997 5667999999999 677788888777 89999999999999988 589999999987
Q ss_pred Cc------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.+|||+|++.+++.+||.||+.++...... ....+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~gl~~~~~~~~~~- 144 (250)
T PRK11264 68 DTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKG--EPKEEATARARELLAKVGLAGKETSYPRR- 144 (250)
T ss_pred cccccccchhhHHHHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhCChhh-
Confidence 42 2467899999999999999999999886432111 12334456788999999998878887666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|.|||++||++ +++.++||+++
T Consensus 145 -------LS~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~tH~~-~~~~~~~d~i~ 215 (250)
T PRK11264 145 -------LSGGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQ-EKRTMVIVTHEM-SFARDVADRAI 215 (250)
T ss_pred -------CChHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEE
Confidence 999999999999999999999999999999999999999999999987 589999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 216 ~l~~G~i~~~~~~~~~~ 232 (250)
T PRK11264 216 FMDQGRIVEQGPAKALF 232 (250)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988663
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=365.82 Aligned_cols=216 Identities=22% Similarity=0.309 Sum_probs=186.9
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++++.+.| |...+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++..
T Consensus 30 ~~~~~~~~~--~~~~~L~~isl~i-----~~Gei~~LvG~N-----GsGKSTLLr~I~Gl~~p---~sG~I~i~G~~i~~ 94 (400)
T PRK10070 30 SKEQILEKT--GLSLGVKDASLAI-----EEGEIFVIMGLS-----GSGKSTMVRLLNRLIEP---TRGQVLIDGVDIAK 94 (400)
T ss_pred cHHHHHhhc--CCeEEEEeEEEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCC---CCCEEEECCEECCc
Confidence 344555553 5556899999999 677888888776 89999999999999999 58999999999753
Q ss_pred ----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 99 ----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 99 ----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .++.+|||+|++.+++.+||+||+.+....+. .+..+..++++++++.+||.+..++++.+
T Consensus 95 ~~~~~l~~~~~~~igyv~Q~~~l~~~~Tv~enl~~~~~~~~---~~~~~~~~~~~e~L~~~gL~~~~~~~~~~------- 164 (400)
T PRK10070 95 ISDAELREVRRKKIAMVFQSFALMPHMTVLDNTAFGMELAG---INAEERREKALDALRQVGLENYAHSYPDE------- 164 (400)
T ss_pred CCHHHHHHHHhCCEEEEECCCcCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCChhhhcCccc-------
Confidence 1 24679999999999999999999999865542 23344556788999999999888888666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 165 -LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~-~~~~~~~Dri~vL~~G~ 242 (400)
T PRK10070 165 -LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDL-DEAMRIGDRIAIMQNGE 242 (400)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875699999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 243 i~~~g~~~~l~ 253 (400)
T PRK10070 243 VVQVGTPDEIL 253 (400)
T ss_pred EEecCCHHHHH
Confidence 99999998764
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=353.30 Aligned_cols=218 Identities=20% Similarity=0.288 Sum_probs=187.2
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..+. .++|+++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~L~Gl~~p---~~G~i~~~g~ 69 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEF-----EQGKYYAIVGQT-----GSGKSTLIQNINALLKP---TTGTVTVDDI 69 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 57899999984322 46999999999 677788888877 89999999999999999 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. .+++.+|||||++ .+++ .||.||+.|+..... .+..+..++++++++.+||. +..++.+.+
T Consensus 70 ~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (286)
T PRK13646 70 TITHKTKDKYIRPVRKRIGMVFQFPESQLFE-DTVEREIIFGPKNFK---MNLDEVKNYAHRLLMDLGFSRDVMSQSPFQ 145 (286)
T ss_pred ECccccccchHHHHHhheEEEecChHhccch-hhHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 8742 3577899999985 4555 599999998754321 23445566789999999996 677777666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +++.++|||+
T Consensus 146 --------LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~-~~~~~~~dri 216 (286)
T PRK13646 146 --------MSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDM-NEVARYADEV 216 (286)
T ss_pred --------CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEE
Confidence 9999999999999999999999999999999999999999999999875699999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 217 ~~l~~G~i~~~g~~~~~~ 234 (286)
T PRK13646 217 IVMKEGSIVSQTSPKELF 234 (286)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999998765
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=344.33 Aligned_cols=217 Identities=25% Similarity=0.344 Sum_probs=188.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 66 (240)
T PRK09493 2 IEFKNVSKHF--GPTQVLHNIDLNI-----DQGEVVVIIGPS-----GSGKSTLLRCINKLEEI---TSGDLIVDGLKVN 66 (240)
T ss_pred EEEEeEEEEE--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECC
Confidence 5789999986 5677999999999 678888888877 89999999999999998 5899999999875
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+||+||+.+...... .....+..+++.++++.+||.+..++.+.+
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-------- 136 (240)
T PRK09493 67 DPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVR--GASKEEAEKQARELLAKVGLAERAHHYPSE-------- 136 (240)
T ss_pred cCChhHHHHhhceEEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCChHHHhcChhh--------
Confidence 3 246789999999999999999999988642111 122334456788999999998888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.+.||++++|++|++
T Consensus 137 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i 214 (240)
T PRK09493 137 LSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAE-EGMTMVIVTHEI-GFAEKVASRLIFIDKGRI 214 (240)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 689999999996 678889999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 215 ~~~g~~~~~~ 224 (240)
T PRK09493 215 AEDGDPQVLI 224 (240)
T ss_pred EeeCCHHHHh
Confidence 9999988764
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=356.94 Aligned_cols=230 Identities=19% Similarity=0.262 Sum_probs=192.0
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.++++||+++|..+ ..++|+++|+++ ++|+.++|+|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~L~Gl~~p---~~G~I~i~g 87 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTF-----EKNKIYFIIGNS-----GSGKSTLVTHFNGLIKS---KYGTIQVGD 87 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECC
Confidence 36889999998432 246999999999 677788888776 89999999999999998 589999999
Q ss_pred EecCc--------------------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh
Q psy2519 94 KPVEG--------------------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL 151 (622)
Q Consensus 94 ~~~~~--------------------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l 151 (622)
+++.. ..++.+|||+|++ .+++ .||+||+.|+..... .+.++..++++++++.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~-~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~ 163 (320)
T PRK13631 88 IYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFK-DTIEKDIMFGPVALG---VKKSEAKKLAKFYLNKM 163 (320)
T ss_pred EEcccccccccccccccccccchHHHHHhcEEEEEECchhcccc-chHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHc
Confidence 87632 2568899999986 4665 499999998754321 23444556788999999
Q ss_pred CCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 152 GLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 152 gL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
||. +..++.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||
T Consensus 164 gL~~~~~~~~~~~--------LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~-~g~TiiivtH 234 (320)
T PRK13631 164 GLDDSYLERSPFG--------LSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKA-NNKTVFVITH 234 (320)
T ss_pred CCChhHhcCCccc--------CCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEec
Confidence 996 567777655 999999999999999999999999999999999999999999999986 6999999999
Q ss_pred cCcHHHHhhccceeeecCCceEEecChHHHH---HHHHhCCCCCCC
Q psy2519 231 QPSSELIDMFDKIILLADSRTAFIGSKDAAL---AFLESQGYPCPY 273 (622)
Q Consensus 231 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~---~~~~~~g~~~p~ 273 (622)
++ +++.+.|||+++|++|+++..|+++++. +.+...++..|.
T Consensus 235 d~-~~~~~~adri~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~p~ 279 (320)
T PRK13631 235 TM-EHVLEVADEVIVMDKGKILKTGTPYEIFTDQHIINSTSIQVPR 279 (320)
T ss_pred CH-HHHHHhCCEEEEEECCEEEEeCCHHHHhcCHHHHHHcCCCCCh
Confidence 96 5788899999999999999999999775 334455665554
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=342.07 Aligned_cols=217 Identities=27% Similarity=0.387 Sum_probs=187.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~i 65 (236)
T TIGR03864 1 ALEVAGLSFAY--GARRALDDVSFTV-----RPGEFVALLGPN-----GAGKSTLFSLLTRLYVA---QEGQISVAGHDL 65 (236)
T ss_pred CEEEEeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEc
Confidence 35789999986 5678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.++|++|++.+++.+||+||+.+....+. ....+..++++++++.+||.+..++.+++ ||
T Consensus 66 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS 134 (236)
T TIGR03864 66 RRAPRAALARLGVVFQQPTLDLDLSVRQNLRYHAALHG---LSRAEARERIAALLARLGLAERADDKVRE--------LN 134 (236)
T ss_pred ccCChhhhhhEEEeCCCCCCcccCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhcCChhh--------CC
Confidence 53 234689999999988899999999988764432 12333455688999999999888888776 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++. .||++++|++|+++.
T Consensus 135 ~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~-~~d~i~~l~~G~i~~ 212 (236)
T TIGR03864 135 GGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLV-DEIE-ADDRLVVLHRGRVLA 212 (236)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCh-hhHh-hCCEEEEEeCCeEEE
Confidence 99999999999999999999999999999999999999999999864689999999997 5665 599999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+++++.
T Consensus 213 ~~~~~~~~ 220 (236)
T TIGR03864 213 DGAAAELR 220 (236)
T ss_pred eCCHHHHH
Confidence 99988664
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-42 Score=343.14 Aligned_cols=213 Identities=22% Similarity=0.324 Sum_probs=182.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC-----CCCCceeeEEEEC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV-----IDDCIIDGDIRVN 92 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~-----~~~~~~~G~I~~~ 92 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +| .+|+|.++
T Consensus 1 i~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~---~~G~i~~~ 65 (227)
T cd03260 1 IELRDLNVYY--GDKHALKDISLDI-----PKGEITALIGPS-----GCGKSTLLRLLNRLNDLIPGAP---DEGEVLLD 65 (227)
T ss_pred CEEEEEEEEc--CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCC---CCeEEEEC
Confidence 3688999986 5667999999999 677788888777 899999999999999 77 58999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc--CCc
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI--GSS 164 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v--~~~ 164 (622)
|+++.. ..++.+||++|++.++ .+||+||+.+....... ....+..++++++++.+||.+..++.+ .+
T Consensus 66 g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 141 (227)
T cd03260 66 GKDIYDLDVDVLELRRRVGMVFQKPNPF-PGSIYDNVAYGLRLHGI--KLKEELDERVEEALRKAALWDEVKDRLHALG- 141 (227)
T ss_pred CEEhhhcchHHHHHHhhEEEEecCchhc-cccHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCChHHhccCCccc-
Confidence 998742 2467899999998888 79999999987654321 122224567889999999987766653 44
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++++ + +|||++||++ +++.++||+++
T Consensus 142 -------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~~~~~d~i~ 211 (227)
T cd03260 142 -------LSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKK-E-YTIVIVTHNM-QQAARVADRTA 211 (227)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhh-C-cEEEEEeccH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 5 8999999996 67888999999
Q ss_pred eecCCceEEecChHH
Q psy2519 245 LLADSRTAFIGSKDA 259 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~ 259 (622)
+|++|++++.|++++
T Consensus 212 ~l~~G~i~~~g~~~~ 226 (227)
T cd03260 212 FLLNGRLVEFGPTEQ 226 (227)
T ss_pred EEeCCEEEEecCccc
Confidence 999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=340.24 Aligned_cols=214 Identities=26% Similarity=0.391 Sum_probs=185.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (222)
T cd03224 1 LEVENLNAGY--GKSQILFGVSLTV-----PEGEIVALLGRN-----GAGKTTLLKTIMGLLPP---RSGSIRFDGRDIT 65 (222)
T ss_pred CEEeeEEeec--CCeeEeeeeeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence 3688999986 5667999999999 678888888777 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-CCCcccCCccCCcCCCCccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~g 171 (622)
. . .++.++|++|++.+++.+|++||+.+...... ..+..++++++++.+ ++.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~~~~~~~~-------- 132 (222)
T cd03224 66 GLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKERRKQLAGT-------- 132 (222)
T ss_pred CCCHHHHHhcCeEEeccccccCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhhhhCchhh--------
Confidence 3 1 35679999999999999999999998754331 122345567888888 577777887666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++.++.+.|+++++ .|+|||++||++ +++.++||++++|++|++
T Consensus 133 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i 210 (222)
T cd03224 133 LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRD-EGVTILLVEQNA-RFALEIADRAYVLERGRV 210 (222)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhccEEEEeeCCeE
Confidence 999999999999999999999999999999999999999999999987 689999999996 678899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (222)
T cd03224 211 VLEGTAAELL 220 (222)
T ss_pred EEeCCHHHHh
Confidence 9999887653
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=348.68 Aligned_cols=216 Identities=23% Similarity=0.295 Sum_probs=188.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.++||++.| |..++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 26 ~~~~~~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~L~Gl~~p---~~G~i~i~g~~~~~ 90 (269)
T cd03294 26 SKEEILKKT--GQTVGVNDVSLDV-----REGEIFVIMGLS-----GSGKSTLLRCINRLIEP---TSGKVLIDGQDIAA 90 (269)
T ss_pred hhhhhhhhc--CCceEeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEccc
Confidence 567888875 7788999999999 678888888777 89999999999999998 48999999998753
Q ss_pred ----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 99 ----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 99 ----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .++.+||++|++.+++.+||+||+.+...... ....+..++++++++.+||.+..++.+++
T Consensus 91 ~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 160 (269)
T cd03294 91 MSRKELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQG---VPRAEREERAAEALELVGLEGWEHKYPDE------- 160 (269)
T ss_pred cChhhhhhhhcCcEEEEecCcccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCCccc-------
Confidence 1 14679999999999999999999998754432 12334456788999999999888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+
T Consensus 161 -LS~Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~-~~~~~~~d~v~~l~~G~ 238 (269)
T cd03294 161 -LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDL-DEALRLGDRIAIMKDGR 238 (269)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999864589999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 239 i~~~g~~~~~~ 249 (269)
T cd03294 239 LVQVGTPEEIL 249 (269)
T ss_pred EEEeCCHHHHH
Confidence 99999988764
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-42 Score=320.60 Aligned_cols=217 Identities=26% Similarity=0.368 Sum_probs=191.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.+++++.+|.--...+++++|+++ ++|+.++++|+ ||||||||||+++|..+| ..|+|.+||+++
T Consensus 3 ~l~~~~~sl~y~g~~~~~le~vsL~i-----a~ge~vv~lGp-----SGcGKTTLLnl~AGf~~P---~~G~i~l~~r~i 69 (259)
T COG4525 3 MLNVSHLSLSYEGKPRSALEDVSLTI-----ASGELVVVLGP-----SGCGKTTLLNLIAGFVTP---SRGSIQLNGRRI 69 (259)
T ss_pred eeehhheEEecCCcchhhhhccceee-----cCCCEEEEEcC-----CCccHHHHHHHHhcCcCc---ccceEEECCEec
Confidence 45678999987322244899999999 67777777766 489999999999999999 589999999999
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+.. ...-|.|||++.|+|++||.||++|+.+++. +++.++++++.+.+..+||++..++++-+ |||||
T Consensus 70 ~gP-gaergvVFQ~~~LlPWl~~~dNvafgL~l~G---i~k~~R~~~a~q~l~~VgL~~~~~~~i~q--------LSGGm 137 (259)
T COG4525 70 EGP-GAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALVGLEGAEHKYIWQ--------LSGGM 137 (259)
T ss_pred cCC-CccceeEeccCccchhhHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHhCcccccccceEe--------ecchH
Confidence 752 2234899999999999999999999998875 67888999999999999999999999777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~ 254 (622)
||||.|||||+.+|++|+||||+++||..+++++.++|-+++++.|+.++++||+. +|+.-+++|+++|+ .||++..
T Consensus 138 rQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~i-eEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 138 RQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDI-EEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred HHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHhhhheeEEecCCCceeeEe
Confidence 99999999999999999999999999999999999999999998899999999996 67777999999998 5899987
Q ss_pred cChHH
Q psy2519 255 GSKDA 259 (622)
Q Consensus 255 G~~~~ 259 (622)
=+++-
T Consensus 217 ~~~df 221 (259)
T COG4525 217 LPLDF 221 (259)
T ss_pred cCCCH
Confidence 77663
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=356.98 Aligned_cols=222 Identities=18% Similarity=0.255 Sum_probs=191.5
Q ss_pred CCcccCCccccccc--------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 16 NNEEVPNVDFSEIV--------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
..++++||+++|.. +..+++++||+++ .+|+.+.|+|+| |||||||+++|+|+++| .+|
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~IvG~s-----GsGKSTLl~~l~gl~~p---~~G 70 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTL-----ERGKTLAVVGES-----GCGKSTLARLLTMIETP---TGG 70 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHHcCCCC---CCc
Confidence 35789999999852 1367999999999 677888888776 89999999999999998 489
Q ss_pred EEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-ccc
Q psy2519 88 DIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQ 157 (622)
Q Consensus 88 ~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 157 (622)
+|.++|+++.. .+|+.+|||||++ .+.|.+||.+++........ ...+.+.++++.++++.+||. +..
T Consensus 71 ~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL~~~~~ 148 (327)
T PRK11308 71 ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINT--SLSAAERREKALAMMAKVGLRPEHY 148 (327)
T ss_pred EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHcc--CCCHHHHHHHHHHHHHHCCCChHHh
Confidence 99999999753 2567899999997 69999999999987655432 123445667889999999996 356
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.
T Consensus 149 ~~~p~~--------LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~ 219 (327)
T PRK11308 149 DRYPHM--------FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL-SVVE 219 (327)
T ss_pred cCCCcc--------CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHH
Confidence 777555 9999999999999999999999999999999999999999999999886699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||+|++|++|++++.|+++++.
T Consensus 220 ~~adrv~vm~~G~ive~g~~~~~~ 243 (327)
T PRK11308 220 HIADEVMVMYLGRCVEKGTKEQIF 243 (327)
T ss_pred HhCCEEEEEECCEEEEECCHHHHh
Confidence 899999999999999999999875
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=338.73 Aligned_cols=206 Identities=26% Similarity=0.339 Sum_probs=181.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~~~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 65 (208)
T cd03268 1 LKTNDLTKTY--GKKRVLDDISLHV-----KKGEIYGFLGPN-----GAGKTTTMKIILGLIKP---DSGEITFDGKSYQ 65 (208)
T ss_pred CEEEEEEEEE--CCeEeEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCCccc
Confidence 3678999987 5678999999999 677788888777 89999999999999998 5999999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++||+|++.+++.+||+||+.++..... . ..++++++++.++|.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~----~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 130 (208)
T cd03268 66 KNIEALRRIGALIEAPGFYPNLTARENLRLLARLLG---I----RKKRIDEVLDVVGLKDSAKKKVKG--------FSLG 130 (208)
T ss_pred chHHHHhhEEEecCCCccCccCcHHHHHHHHHHhcC---C----cHHHHHHHHHHcCCHHHHhhhHhh--------CCHH
Confidence 3 356789999999999999999999998764332 1 134578899999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++ +++.+++|++++|++|++++.|
T Consensus 131 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 131 MKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRD-QGITVLISSHLL-SEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999987 689999999996 6788899999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=339.89 Aligned_cols=215 Identities=25% Similarity=0.328 Sum_probs=183.3
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||++.|..++ .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~ 71 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSI-----GEGEMMAIVGSS-----GSGKSTLLHLLGGLDTP---TSGDVIFNGQ 71 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCE
Confidence 468999999984332 57999999999 677788888777 89999999999999998 5999999999
Q ss_pred ecCcc-------c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEGK-------F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~~-------~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++... . ++.+||++|++.+++.+||+||+.+...... ....+.+++++++++.+||.+..++.+.+
T Consensus 72 ~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 145 (233)
T PRK11629 72 PMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGK---KKPAEINSRALEMLAAVGLEHRANHRPSE--- 145 (233)
T ss_pred EcCcCCHHHHHHHHhccEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh---
Confidence 87531 2 3679999999999999999999998754321 12334456788999999998888887666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++||++ +++.. +|++++|
T Consensus 146 -----LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~-~~~~~-~~~~~~l 218 (233)
T PRK11629 146 -----LSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDL-QLAKR-MSRQLEM 218 (233)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHh-hCEEEEE
Confidence 9999999999999999999999999999999999999999999999864689999999996 56655 5899999
Q ss_pred cCCceEEecCh
Q psy2519 247 ADSRTAFIGSK 257 (622)
Q Consensus 247 ~~G~iv~~G~~ 257 (622)
++|++++.|+.
T Consensus 219 ~~G~i~~~~~~ 229 (233)
T PRK11629 219 RDGRLTAELSL 229 (233)
T ss_pred ECCEEEEEecc
Confidence 99999988763
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=343.08 Aligned_cols=224 Identities=21% Similarity=0.291 Sum_probs=193.4
Q ss_pred cccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC-C-CCceeeEEEECC
Q psy2519 18 EEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI-D-DCIIDGDIRVNG 93 (622)
Q Consensus 18 ~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~-~~~~~G~I~~~G 93 (622)
++++||+.+|.. |.+++++||||++ ++|+.+.|+|. |||||||+.++|.|+++ + +...+|+|.++|
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i-----~~GE~lgiVGE-----SGsGKS~~~~aim~llp~~~~~i~~G~i~f~g 71 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFEL-----KKGEILGIVGE-----SGSGKSVLAKAIMGLLPKPNARIVGGEILFDG 71 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEE-----cCCcEEEEEcC-----CCCCHHHHHHHHHhccCCCCCeEeeeEEEECC
Confidence 578999999865 3478999999999 67777777766 48999999999999997 4 345789999999
Q ss_pred EecCc-------c-ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc---cCCc
Q psy2519 94 KPVEG-------K-FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS---QHTR 160 (622)
Q Consensus 94 ~~~~~-------~-~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~---~~~~ 160 (622)
+++.. + ..+.|+|+||++ .|.|.+||.+.+.-..+.+.... .+++.++++.++|+.+||.+. .+.+
T Consensus 72 ~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~-~~~ea~~~a~~~L~~Vgi~~~~~~~~~Y 150 (316)
T COG0444 72 KDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGL-SKKEAKERAIELLELVGIPDPERRLKSY 150 (316)
T ss_pred cccccCCHHHHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcch-hhHHHHHHHHHHHHHcCCCCHHHHHhhC
Confidence 98743 1 357899999996 69999999999988776543111 355677889999999999753 3555
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
|++ |||||||||.||.||+.+|++||.||||++||...+.+|+++|++++++.|+++|++|||+ ..+.++|
T Consensus 151 -----Phe---lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl-~vva~~a 221 (316)
T COG0444 151 -----PHE---LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDL-GVVAEIA 221 (316)
T ss_pred -----Ccc---cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhc
Confidence 777 9999999999999999999999999999999999999999999999988899999999996 6899999
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||+||..|++|+.|++++++
T Consensus 222 Dri~VMYaG~iVE~g~~~~i~ 242 (316)
T COG0444 222 DRVAVMYAGRIVEEGPVEEIF 242 (316)
T ss_pred ceEEEEECcEEEEeCCHHHHh
Confidence 999999999999999999776
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-41 Score=349.41 Aligned_cols=219 Identities=21% Similarity=0.328 Sum_probs=189.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~~-~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GaGKSTLl~~i~Gl~~p---~~G~i~i~g~~~ 70 (283)
T PRK13636 5 ILKVEELNYNYS-DGTHALKGININI-----KKGEVTAILGGN-----GAGKSTLFQNLNGILKP---SSGRILFDGKPI 70 (283)
T ss_pred eEEEEeEEEEeC-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CccEEEECCEEC
Confidence 478999999973 3567999999999 677888888887 89999999999999998 589999999987
Q ss_pred Cc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. .+++.+||++|++. .+...||+||+.+...... .+..+..++++++++.+||.+..++.+.+
T Consensus 71 ~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~------ 141 (283)
T PRK13636 71 DYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLK---LPEDEVRKRVDNALKRTGIEHLKDKPTHC------ 141 (283)
T ss_pred CCCcchHHHHHhhEEEEecCcchhhccccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhhhhCCccc------
Confidence 41 35678999999863 3445799999998654321 23344556789999999999888888777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.++|++++++.|+|||++||++ +++.++|||+++|++|
T Consensus 142 --LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~-~~~~~~~dri~~l~~G 218 (283)
T PRK13636 142 --LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDI-DIVPLYCDNVFVMKEG 218 (283)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999875599999999996 6788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 219 ~i~~~g~~~~~~ 230 (283)
T PRK13636 219 RVILQGNPKEVF 230 (283)
T ss_pred EEEEeCCHHHHh
Confidence 999999998865
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=335.66 Aligned_cols=202 Identities=26% Similarity=0.359 Sum_probs=174.5
Q ss_pred ccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 19 EVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 19 ~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+++||+++| ++ .++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~l~~~~--~~~~~~l~~v~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 65 (205)
T cd03226 1 RIENISFSY--KKGTEILDDLSLDL-----YAGEIIALTGKN-----GAGKTTLAKILAGLIKE---SSGSILLNGKPIK 65 (205)
T ss_pred CcccEEEEe--CCcCceeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEhh
Confidence 478999987 44 67999999999 677788888777 89999999999999998 5999999999875
Q ss_pred c-cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G-KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~-~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++. .+..+||+||+.++..... . ..++++++++.+||.+..++.+.+ ||||
T Consensus 66 ~~~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 130 (205)
T cd03226 66 AKERRKSIGYVMQDVDYQLFTDSVREELLLGLKELD----A---GNEQAETVLKDLDLYALKERHPLS--------LSGG 130 (205)
T ss_pred hHHhhcceEEEecChhhhhhhccHHHHHhhhhhhcC----c---cHHHHHHHHHHcCCchhcCCCchh--------CCHH
Confidence 4 45678999999974 3446799999988653321 1 124678999999999888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++
T Consensus 131 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~-~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 131 QKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAA-QGKAVIVITHDY-EFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999999999999999999987 699999999996 6788899999999999875
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-41 Score=342.72 Aligned_cols=219 Identities=21% Similarity=0.332 Sum_probs=186.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~ 68 (247)
T TIGR00972 1 AIEIENLNLFY--GEKEALKNINLDI-----PKNQVTALIGPS-----GCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQ 68 (247)
T ss_pred CEEEEEEEEEE--CCeeeecceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCCCcCCCCceEEEECCE
Confidence 35789999986 5667999999999 677788888777 8999999999999998720 11899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ +||.||+.+....+. ..+..+..++++++++.+||. +..++.+++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 144 (247)
T TIGR00972 69 DIYDKKIDVVELRRRVGMVFQKPNPFP-MSIYDNIAYGPRLHG--IKDKKELDEIVEESLKKAALWDEVKDRLHDSALG- 144 (247)
T ss_pred EccccccchHHHHhheEEEecCcccCC-CCHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCcchhhHhhCCccc-
Confidence 8752 24678999999998888 999999998764432 112334456788999999997 666777665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 145 -------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i~ 214 (247)
T TIGR00972 145 -------LSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKK--KYTIVIVTHNM-QQAARISDRTA 214 (247)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--cCeEEEEecCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999976 38999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 215 ~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 215 FFYDGELVEYGPTEQIF 231 (247)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=336.24 Aligned_cols=206 Identities=25% Similarity=0.377 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~il~~is~~i-----~~G~~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (214)
T TIGR02673 2 IEFHNVSKAYP-GGVAALHDVSLHI-----RKGEFLFLTGPS-----GAGKTTLLKLLYGALTP---SRGQVRIAGEDVN 67 (214)
T ss_pred EEEEeeeEEeC-CCceeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcc
Confidence 57899999873 4567999999999 677788888777 89999999999999988 5899999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. .+++.++|++|++.+++.+||.||+.+...... ....+..++++++++.++|.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 137 (214)
T TIGR02673 68 RLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRG---KKEREIQRRVGAALRQVGLEHKADAFPEQ------- 137 (214)
T ss_pred cCCHHHHHHHHhheEEEecChhhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh-------
Confidence 3 246789999999999999999999998754432 12233456788999999998877887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+
T Consensus 138 -LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~tH~~-~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 138 -LSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNK-RGTTVIVATHDL-SLVDRVAHRVIILDDGR 214 (214)
T ss_pred -CCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999999999999999986 689999999996 68888999999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=341.74 Aligned_cols=218 Identities=23% Similarity=0.305 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~~sl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (241)
T PRK10895 3 TLTAKNLAKAY--KGRRVVEDVSLTV-----NSGEIVGLLGPN-----GAGKTTTFYMVVGIVPR---DAGNIIIDDEDI 67 (241)
T ss_pred eEEEeCcEEEe--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 46789999987 5678999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.++|++|++.+++.+||.||+.+...... .....+.+++++++++.+|+.+..++.+++
T Consensus 68 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 137 (241)
T PRK10895 68 SLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRD--DLSAEQREDRANELMEEFHIEHLRDSMGQS-------- 137 (241)
T ss_pred CCCCHHHHHHhCeEEeccCCcccccCcHHHHHhhhhhccc--ccCHHHHHHHHHHHHHHcCCHHHhhcchhh--------
Confidence 53 145789999999999999999999988654321 112334456788999999998877777666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.++++++ .|+|||++||++ +++.+.||++++|++|++
T Consensus 138 LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~d~v~~l~~G~i 215 (241)
T PRK10895 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRD-SGLGVLITDHNV-RETLAVCERAYIVSQGHL 215 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEEcCH-HHHHHhcCEEEEEeCCeE
Confidence 999999999999999999999999999999999999999999999986 699999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 216 ~~~~~~~~~~ 225 (241)
T PRK10895 216 IAHGTPTEIL 225 (241)
T ss_pred EeeCCHHHHh
Confidence 9999988764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=343.10 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=188.1
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 68 (257)
T PRK10619 4 NKLNVIDLHKRY--GEHEVLKGVSLQA-----NAGDVISIIGSS-----GSGKSTFLRCINFLEKP---SEGSIVVNGQT 68 (257)
T ss_pred ccEEEeeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence 467899999997 5678999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHH-cCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 96 VEG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 96 ~~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
+.. .+++.++||+|++.+++.+||+||+.++.. ... ....+.++++.++++.+|+.+..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~ 145 (257)
T PRK10619 69 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKQEARERAVKYLAKVGIDERA 145 (257)
T ss_pred cccccccccccccccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHHcCCChhh
Confidence 641 246789999999999999999999987542 221 12344456788999999998764
Q ss_pred -CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 158 -HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 158 -~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
++.+.+ ||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++
T Consensus 146 ~~~~~~~--------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsH~~-~~~ 215 (257)
T PRK10619 146 QGKYPVH--------LSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFA 215 (257)
T ss_pred hhCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH
Confidence 666555 999999999999999999999999999999999999999999999987 699999999996 678
Q ss_pred HhhccceeeecCCceEEecChHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++|||+++|++|++++.|+++++.
T Consensus 216 ~~~~d~i~~l~~G~i~~~~~~~~~~ 240 (257)
T PRK10619 216 RHVSSHVIFLHQGKIEEEGAPEQLF 240 (257)
T ss_pred HHhcCEEEEEECCEEEEeCCHHHhh
Confidence 8899999999999999999988654
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=343.57 Aligned_cols=214 Identities=27% Similarity=0.376 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 65 (255)
T PRK11248 1 MLQISHLYADY--GGKPALEDINLTL-----ESGELLVVLGPS-----GCGKTTLLNLIAGFVPY---QHGSITLDGKPV 65 (255)
T ss_pred CEEEEEEEEEe--CCeeeEeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 36789999986 5677999999999 678888888887 89999999999999998 589999999987
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
.. .++.+||++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+.+ |||||
T Consensus 66 ~~-~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgGq 133 (255)
T PRK11248 66 EG-PGAERGVVFQNEGLLPWRNVQDNVAFGLQLAG---VEKMQRLEIAHQMLKKVGLEGAEKRYIWQ--------LSGGQ 133 (255)
T ss_pred CC-CCCcEEEEeCCCccCCCCcHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCChhHhhCChhh--------CCHHH
Confidence 54 34568999999999999999999988754332 22334456788999999998888887666 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~ 254 (622)
|||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|+ +|+++..
T Consensus 134 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~-~~~~~~~d~i~~l~~~~G~i~~~ 212 (255)
T PRK11248 134 RQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDI-EEAVFMATELVLLSPGPGRVVER 212 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEeCCCcEEEEE
Confidence 99999999999999999999999999999999999999999764689999999996 68889999999998 5999988
Q ss_pred cChH
Q psy2519 255 GSKD 258 (622)
Q Consensus 255 G~~~ 258 (622)
++.+
T Consensus 213 ~~~~ 216 (255)
T PRK11248 213 LPLN 216 (255)
T ss_pred ecCC
Confidence 7654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=335.72 Aligned_cols=208 Identities=27% Similarity=0.417 Sum_probs=180.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++| .++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~--~~~~~l~~vs~~i-----~~g-~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 64 (211)
T cd03264 1 LQLENLTKRY--GKKRALDGVSLTL-----GPG-MYGLLGPN-----GAGKTTLMRILATLTPP---SSGTIRIDGQDVL 64 (211)
T ss_pred CEEEEEEEEE--CCEEEEcceeEEE-----cCC-cEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCCccc
Confidence 3678999986 5567999999999 565 77777776 89999999999999998 5899999998875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||.||+.+...... ....+..++++++++.+||.+..++.+.+ |||
T Consensus 65 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 133 (211)
T cd03264 65 KQPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKG---IPSKEVKARVDEVLELVNLGDRAKKKIGS--------LSG 133 (211)
T ss_pred cchHHHHhheEEecCCCcccccCCHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHCCCHHHHhCchhh--------CCH
Confidence 3 357789999999999999999999998765432 12233456788999999998888888666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||+++|++|++++.
T Consensus 134 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 134 GMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGE--DRIVILSTHIV-EDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEcCCH-HHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999999975 48999999996 678889999999999999876
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 211 g 211 (211)
T cd03264 211 G 211 (211)
T ss_pred C
Confidence 5
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=343.22 Aligned_cols=221 Identities=22% Similarity=0.306 Sum_probs=188.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 69 (255)
T PRK11300 5 LLSVSGLMMRF--GGLLAVNNVNLEV-----REQEIVSLIGPN-----GAGKTTVFNCLTGFYKP---TGGTILLRGQHI 69 (255)
T ss_pred eEEEeeEEEEE--CCEEEEEeeeeEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCcCC---CcceEEECCEEC
Confidence 47899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC----------c--cccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD----------R--RVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~----------~--~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.. . .+..++|++|++.+++.+||+||+.++...... . .....+..++++++++.+||.+..++
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~ 149 (255)
T PRK11300 70 EGLPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANR 149 (255)
T ss_pred CCCCHHHHHhcCeEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhC
Confidence 53 1 345699999999999999999999986431100 0 00112234567889999999888888
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+++ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++
T Consensus 150 ~~~~--------LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~-~~~~~~ 220 (255)
T PRK11300 150 QAGN--------LAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDM-KLVMGI 220 (255)
T ss_pred Chhh--------CCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHHHh
Confidence 8777 9999999999999999999999999999999999999999999999874589999999996 688899
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 221 ~d~i~~l~~g~i~~~~~~~~~~ 242 (255)
T PRK11300 221 SDRIYVVNQGTPLANGTPEEIR 242 (255)
T ss_pred CCEEEEEECCeEEecCCHHHHh
Confidence 9999999999999999988653
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=352.55 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=188.2
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~G 93 (622)
.++++||+++|..++ .+++++|||++ .+|+.+.++|+| |||||||+++|+|++++.. ..+|+|.++|
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~lvG~s-----GsGKSTL~~~l~Gll~~~~~~~~G~i~~~G 72 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSV-----KQGEVVGIVGES-----GSGKSVSSLAIMGLIDYPGRVMAEKLEFNG 72 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCCCCCCcceEEEECC
Confidence 468999999984322 57999999999 677778888776 8999999999999997421 2589999999
Q ss_pred EecCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCCc
Q psy2519 94 KPVEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTR 160 (622)
Q Consensus 94 ~~~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~ 160 (622)
+++.. . .++.+|||||++ .+.|.+||.+++........ ...+++.++++.++++.+||.+ ..+++
T Consensus 73 ~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~--~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~ 150 (326)
T PRK11022 73 QDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQ--GGNKKTRRQRAIDLLNQVGIPDPASRLDVY 150 (326)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 99753 1 235799999997 58999999999877654432 1234455678899999999974 34666
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+++ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.+++
T Consensus 151 p~~--------LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl-~~~~~~a 221 (326)
T PRK11022 151 PHQ--------LSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDL-ALVAEAA 221 (326)
T ss_pred chh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhC
Confidence 444 9999999999999999999999999999999999999999999999876799999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|||++|++|++++.|+++++.
T Consensus 222 dri~vm~~G~ive~g~~~~~~ 242 (326)
T PRK11022 222 HKIIVMYAGQVVETGKAHDIF 242 (326)
T ss_pred CEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999875
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=352.59 Aligned_cols=224 Identities=19% Similarity=0.297 Sum_probs=189.4
Q ss_pred CcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.++++||+++|.. |..++++++|+++ .+|+.+.++|+| |||||||+++|+|+++|+...+|+|.++|+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~ivG~s-----GsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~ 81 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSL-----RAGETLGIVGES-----GSGKSQTAFALMGLLAANGRIGGSATFNGR 81 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCCCCCCCeEEEECCE
Confidence 4789999999843 3467999999999 677888888776 899999999999999884224899999999
Q ss_pred ecCc----c---c-cccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc---CCcc
Q psy2519 95 PVEG----K---F-RSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ---HTRI 161 (622)
Q Consensus 95 ~~~~----~---~-r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~---~~~v 161 (622)
++.. + + ++.++||||++ .+.|.+|+.+++........+ ..+.+..+++.++++.+||.+.. +++
T Consensus 82 ~i~~~~~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~--~~~~~~~~~~~~~L~~vgL~~~~~~~~~~- 158 (330)
T PRK09473 82 EILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG--MSKAEAFEESVRMLDAVKMPEARKRMKMY- 158 (330)
T ss_pred ECCcCCHHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCCChHHHhcCC-
Confidence 9853 1 2 25799999997 689999999999876544321 23455567889999999997532 344
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
|++ |||||||||+|||||+.+|++||+||||+|||+.++.+++++|++++++.|.|+|++|||+ ..+.+++|
T Consensus 159 ----p~~---LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl-~~~~~~~D 230 (330)
T PRK09473 159 ----PHE---FSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDL-GVVAGICD 230 (330)
T ss_pred ----ccc---CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCH-HHHHHhCC
Confidence 444 9999999999999999999999999999999999999999999999886699999999996 67888999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+++|++|++++.|+++++.
T Consensus 231 ri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 231 KVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999999875
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=348.49 Aligned_cols=217 Identities=18% Similarity=0.252 Sum_probs=186.3
Q ss_pred cccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..+ +.++++++|+++ .+|+.+.++|+| ||||||||++|+|+++| .+|+|.++|+
T Consensus 3 i~~~~l~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~iiG~N-----GaGKSTLl~~l~Gl~~p---~~G~i~~~g~ 69 (287)
T PRK13641 3 IKFENVDYIYSPGTPMEKKGLDNISFEL-----EEGSFVALVGHT-----GSGKSTLMQHFNALLKP---SSGTITIAGY 69 (287)
T ss_pred EEEEEEEEEcCCCCCccccceeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 5689999997422 146999999999 678888888887 89999999999999999 5999999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+||++|++ .++ .+||.||+.+...... ...++..++++++++.+||. +..++.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~-~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 145 (287)
T PRK13641 70 HITPETGNKNLKKLRKKVSLVFQFPEAQLF-ENTVLKDVEFGPKNFG---FSEDEAKEKALKWLKKVGLSEDLISKSPFE 145 (287)
T ss_pred ECccccccchHHHHHhceEEEEeChhhhhc-cchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhhCCccc
Confidence 8742 2457899999986 344 5799999998754332 23344556789999999997 677888777
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++
T Consensus 146 --------LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tvlivsH~~-~~~~~~~d~v 215 (287)
T PRK13641 146 --------LSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQK-AGHTVILVTHNM-DDVAEYADDV 215 (287)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13641 216 LVLEHGKLIKHASPKEIF 233 (287)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-41 Score=343.62 Aligned_cols=218 Identities=26% Similarity=0.335 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~p---~~G~i~~~g~~~ 66 (258)
T PRK13548 2 MLEARNLSVRL--GGRTLLDDVSLTL-----RPGEVVAILGPN-----GAGKSTLLRALSGELSP---DSGEVRLNGRPL 66 (258)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEEc
Confidence 46789999986 5677999999999 677788888887 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+||++|++.+++.+||+||+.+...... ...++..++++++++.+||.+..++.+++ |
T Consensus 67 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 135 (258)
T PRK13548 67 ADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHG---LSRAEDDALVAAALAQVDLAHLAGRDYPQ--------L 135 (258)
T ss_pred ccCCHHHhhhheEEEccCCcCCCCCCHHHHHHhhhcccC---CCcHHHHHHHHHHHHHcCCHhHhcCCccc--------C
Confidence 53 345789999999988888999999988643221 11223345678999999998888888777 9
Q ss_pred ChHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||++||++|+ .+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|
T Consensus 136 SgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l 214 (258)
T PRK13548 136 SGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL-NLAARYADRIVLL 214 (258)
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhcCEEEEE
Confidence 999999999999999 599999999999999999999999999999844689999999996 6788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 215 ~~G~i~~~~~~~~~~ 229 (258)
T PRK13548 215 HQGRLVADGTPAEVL 229 (258)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999988664
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=341.35 Aligned_cols=218 Identities=22% Similarity=0.315 Sum_probs=188.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 65 (252)
T TIGR03005 1 VRFSDVTKRF--GILTVLDGLNFSV-----AAGEKVALIGPS-----GSGKSTILRILMTLEPI---DEGQIQVEGEQLY 65 (252)
T ss_pred CEEEEEEEEe--CCeeEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3688999987 5678999999999 678888888887 89999999999999998 5899999999873
Q ss_pred c-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc
Q psy2519 98 G-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 160 (622)
Q Consensus 98 ~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 160 (622)
. ..++.++|++|++.+++.+||.||+.++..... .....+..++++++++.+|+.+..++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 143 (252)
T TIGR03005 66 HMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVL--GMARAEAEKRAMELLDMVGLADKADHM 143 (252)
T ss_pred ccccccccccccchhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCChhHhhcC
Confidence 1 246789999999999999999999988643211 122334456788999999998888887
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+.+ ||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.+++
T Consensus 144 ~~~--------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~ 214 (252)
T TIGR03005 144 PAQ--------LSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEM-GFAREFA 214 (252)
T ss_pred hhh--------cCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhc
Confidence 666 9999999999999999999999999999999999999999999999875589999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||+++|++|++++.|+++++.
T Consensus 215 d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 215 DRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988663
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=345.03 Aligned_cols=217 Identities=19% Similarity=0.230 Sum_probs=186.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+++| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 65 (271)
T PRK13638 1 MLATSDLWFRY--QDEPVLKGLNLDF-----SLSPVTGLVGAN-----GCGKSTLFMNLSGLLRP---QKGAVLWQGKPL 65 (271)
T ss_pred CeEEEEEEEEc--CCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CccEEEECCEEc
Confidence 46789999997 5667999999999 677788888877 89999999999999998 589999999987
Q ss_pred Cc------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..++.+|||+|++. .+...|+.||+.+...... ....+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 136 (271)
T PRK13638 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLG---VPEAEITRRVDEALTLVDAQHFRHQPIQC------ 136 (271)
T ss_pred ccccCCHHHHHhheEEEeeChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHhHhcCCchh------
Confidence 41 24678999999875 3455689999988654331 12334455688999999998888888766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|
T Consensus 137 --LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vtH~~-~~~~~~~d~i~~l~~G 212 (271)
T PRK13638 137 --LSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVA-QGNHVIISSHDI-DLIYEISDAVYVLRQG 212 (271)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 589999999996 6788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 213 ~i~~~g~~~~~~ 224 (271)
T PRK13638 213 QILTHGAPGEVF 224 (271)
T ss_pred EEEEeCCHHHHh
Confidence 999999998764
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-41 Score=333.77 Aligned_cols=207 Identities=22% Similarity=0.343 Sum_probs=179.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~~sl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 66 (214)
T cd03292 1 IEFINVTKTYP-NGTAALDGINISI-----SAGEFVFLVGPS-----GAGKSTLLKLIYKEELP---TSGTIRVNGQDVS 66 (214)
T ss_pred CEEEEEEEEeC-CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcc
Confidence 35789999873 2357999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.++|++|++.+++.+|++||+.+....+. ...++..++++++++.+||++..++.+++
T Consensus 67 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 136 (214)
T cd03292 67 DLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTG---VPPREIRKRVPAALELVGLSHKHRALPAE------- 136 (214)
T ss_pred cCCHHHHHHHHHheEEEecCchhccCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCChhh-------
Confidence 3 246789999999999999999999998765432 12334456788999999998888888666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.++||++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tiiivtH~~-~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 137 -LSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINK-AGTTVVVATHAK-ELVDTTRHRVIALERGK 213 (214)
T ss_pred -cCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCc
Confidence 999999999999999999999999999999999999999999999976 589999999996 67888999999999997
Q ss_pred e
Q psy2519 251 T 251 (622)
Q Consensus 251 i 251 (622)
+
T Consensus 214 ~ 214 (214)
T cd03292 214 L 214 (214)
T ss_pred C
Confidence 4
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=345.52 Aligned_cols=219 Identities=25% Similarity=0.344 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++..+++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (277)
T PRK13652 3 LIETRDLCYSYS-GSKEALNNINFIA-----PRNSRIAVIGPN-----GAGKSTLFRHFNGILKP---TSGSVLIRGEPI 68 (277)
T ss_pred eEEEEEEEEEeC-CCCceeeEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 367899999973 3456999999999 677788888877 89999999999999998 599999999987
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. .+...||.||+.+...... .+..+..++++++++.+||.+..++.+.+
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 137 (277)
T PRK13652 69 TKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLG---LDEETVAHRVSSALHMLGLEELRDRVPHH-------- 137 (277)
T ss_pred CcCCHHHHHhheEEEecCcccccccccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHCCChhHhcCCccc--------
Confidence 53 35678999999963 3446799999988654321 23344456788999999999888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.|||+++|++|++
T Consensus 138 LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~~~~~drv~~l~~G~i 216 (277)
T PRK13652 138 LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQL-DLVPEMADYIYVMDKGRI 216 (277)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 217 ~~~g~~~~~~ 226 (277)
T PRK13652 217 VAYGTVEEIF 226 (277)
T ss_pred EEECCHHHHh
Confidence 9999999875
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=344.34 Aligned_cols=217 Identities=24% Similarity=0.278 Sum_probs=186.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|.++
T Consensus 1 ml~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 66 (274)
T PRK13644 1 MIRLENVSYSYP-DGTPALENINLVI-----KKGEYIGIIGKN-----GSGKSTLALHLNGLLRP---QKGKVLVSGIDT 66 (274)
T ss_pred CEEEEEEEEEcC-CCCceeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEEC
Confidence 367899999973 3466999999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+||++|++. .++..||.||+.+...... .+..+..++++++++.+||.+..++.+++
T Consensus 67 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~------- 136 (274)
T PRK13644 67 GDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLC---LPPIEIRKRVDRALAEIGLEKYRHRSPKT------- 136 (274)
T ss_pred CccccHHHHHhheEEEEEChhhhcccchHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHHHhcCCccc-------
Confidence 42 34678999999975 4667899999998754331 23344456788999999999888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++ +.||++++|++|+
T Consensus 137 -LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~-~g~til~~tH~~-~~~-~~~d~v~~l~~G~ 212 (274)
T PRK13644 137 -LSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHE-KGKTIVYITHNL-EEL-HDADRIIVMDRGK 212 (274)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-hhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999986 699999999996 566 5699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 213 i~~~g~~~~~~ 223 (274)
T PRK13644 213 IVLEGEPENVL 223 (274)
T ss_pred EEEECCHHHHh
Confidence 99999998764
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=346.30 Aligned_cols=222 Identities=21% Similarity=0.325 Sum_probs=189.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++.|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|....+|+|.++|+++
T Consensus 5 ~l~i~~l~~~~~~~~~~~l~~v~l~i-----~~Ge~~~I~G~n-----GaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~ 74 (282)
T PRK13640 5 IVEFKHVSFTYPDSKKPALNDISFSI-----PRGSWTALIGHN-----GSGKSTISKLINGLLLPDDNPNSKITVDGITL 74 (282)
T ss_pred eEEEEEEEEEcCCCCccceeeEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcccCCCCCCCcEEEECCEEC
Confidence 57899999997433456999999999 677788888777 89999999999999988411139999999998
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++. +++..||.||+.+...... .+.++..++++++++.+||.+..++.+.+
T Consensus 75 ~~~~~~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~-------- 143 (282)
T PRK13640 75 TAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRA---VPRPEMIKIVRDVLADVGMLDYIDSEPAN-------- 143 (282)
T ss_pred CcCCHHHHHhheEEEEECHHHhhccCCHHHHHHhhHHhCC---CCHHHHHHHHHHHHHHCCChhHhcCCccc--------
Confidence 54 35678999999974 6778999999998654332 23445566789999999999888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++ ..||++++|++|++
T Consensus 144 LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~-~~~-~~~d~i~~l~~G~i 221 (282)
T PRK13640 144 LSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDI-DEA-NMADQVLVLDDGKL 221 (282)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874599999999997 466 57999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 222 ~~~g~~~~~~ 231 (282)
T PRK13640 222 LAQGSPVEIF 231 (282)
T ss_pred EEeCCHHHHh
Confidence 9999998775
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=334.36 Aligned_cols=209 Identities=21% Similarity=0.285 Sum_probs=181.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 67 (222)
T PRK10908 2 IRFEHVSKAYL-GGRQALQGVTFHM-----RPGEMAFLTGHS-----GAGKSTLLKLICGIERP---SAGKIWFSGHDIT 67 (222)
T ss_pred EEEEeeEEEec-CCCeEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 57899999873 4567999999999 678888888887 89999999999999998 5999999999875
Q ss_pred c-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.++|++|++.+++.+||+||+.+...... ....+..++++++++.+++.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 137 (222)
T PRK10908 68 RLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAG---ASGDDIRRRVSAALDKVGLLDKAKNFPIQ------- 137 (222)
T ss_pred cCChhHHHHHHhheEEEecCccccccccHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCCchh-------
Confidence 3 146789999999988899999999998754432 22334455678999999998877887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ +|.|+|++||++ +++.+.||++++|++|+
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 214 (222)
T PRK10908 138 -LSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNR-VGVTVLMATHDI-GLISRRSYRMLTLSDGH 214 (222)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 589999999996 68888999999999999
Q ss_pred eEE
Q psy2519 251 TAF 253 (622)
Q Consensus 251 iv~ 253 (622)
++.
T Consensus 215 i~~ 217 (222)
T PRK10908 215 LHG 217 (222)
T ss_pred Ecc
Confidence 864
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=308.36 Aligned_cols=214 Identities=21% Similarity=0.296 Sum_probs=188.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+.++|+++.| |..++|.+++++. .+|+..+++|| ||||||||+|.|.-+..| .+|+..+.|...+
T Consensus 3 irv~~in~~y--g~~q~lfdi~l~~-----~~getlvllgp-----sgagkssllr~lnlle~p---~sg~l~ia~~~fd 67 (242)
T COG4161 3 IQLNGINCFY--GAHQALFDITLDC-----PEGETLVLLGP-----SGAGKSSLLRVLNLLEMP---RSGTLNIAGNHFD 67 (242)
T ss_pred eEEccccccc--ccchheeeeeecC-----CCCCEEEEECC-----CCCchHHHHHHHHHHhCC---CCCeEEecccccc
Confidence 5789999986 9999999999998 45556666655 589999999999998888 5999999887542
Q ss_pred --c--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 98 --G--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 98 --~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
. .+|+.+|+|||+..++|+|||.||+.-+...- .++++++.+.++.++++++.|.+.+|+.+-.
T Consensus 68 ~s~~~~~k~i~~lr~~vgmvfqqy~lwphltv~enlieap~kv--~gl~~~qa~~~a~ellkrlrl~~~adr~plh---- 141 (242)
T COG4161 68 FSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRV--LGLSKDQALARAEKLLKRLRLKPYADRYPLH---- 141 (242)
T ss_pred cccCccHHHHHHHHHhhhhhhhhhccCchhHHHHHHHhhhHHH--hCCCHHHHHHHHHHHHHHhccccccccCcee----
Confidence 1 37899999999999999999999997754221 1357778888999999999999999998555
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||+|||+|||||+++|++|++||||++|||.-..+++++|++++. .|.|-+++||.. +.+.+.+.||+.|.
T Consensus 142 ----lsggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~-tgitqvivthev-~va~k~as~vvyme 215 (242)
T COG4161 142 ----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAE-TGITQVIVTHEV-EVARKTASRVVYME 215 (242)
T ss_pred ----cccchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHh-cCceEEEEEeeh-hHHHhhhhheEeee
Confidence 999999999999999999999999999999999999999999999997 799999999996 67888999999999
Q ss_pred CCceEEecChH
Q psy2519 248 DSRTAFIGSKD 258 (622)
Q Consensus 248 ~G~iv~~G~~~ 258 (622)
+|+|++.|+.+
T Consensus 216 ~g~ive~g~a~ 226 (242)
T COG4161 216 NGHIVEQGDAS 226 (242)
T ss_pred cCeeEeecchh
Confidence 99999999876
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.62 Aligned_cols=219 Identities=21% Similarity=0.280 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 66 (242)
T TIGR03411 2 ILYLEGLSVSF--DGFKALNDLSLYV-----DPGELRVIIGPN-----GAGKTTMMDVITGKTRP---DEGSVLFGGTDL 66 (242)
T ss_pred eEEEEeeEEEc--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECCeec
Confidence 46789999987 5567999999999 678888888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC--c---cccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD--R---RVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~--~---~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
.. ..++.++|++|++.+++.+||+||+.++...... . ....++..++++++++.+|+.+..++.+++
T Consensus 67 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 143 (242)
T TIGR03411 67 TGLPEHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGL--- 143 (242)
T ss_pred CCCCHHHHHhcCeeEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhh---
Confidence 53 1345799999999999999999999986432110 0 011233456788999999999888888777
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++|
T Consensus 144 -----LS~Ge~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~~l 215 (242)
T TIGR03411 144 -----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAG--KHSVVVVEHDM-EFVRSIADKVTVL 215 (242)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhc--CCEEEEEECCH-HHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999975 68999999996 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 216 ~~g~~~~~~~~~~~~ 230 (242)
T TIGR03411 216 HQGSVLAEGSLDQVQ 230 (242)
T ss_pred ECCeEEeeCCHHHHh
Confidence 999999999988653
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-41 Score=338.70 Aligned_cols=215 Identities=20% Similarity=0.289 Sum_probs=185.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 69 (237)
T PRK11614 5 MLSFDKVSAHY--GKIQALHEVSLHI-----NQGEIVTLIGAN-----GAGKTTLLGTLCGDPRA---TSGRIVFDGKDI 69 (237)
T ss_pred EEEEEeEEEee--CCceeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCceEEECCEec
Confidence 57789999986 5678999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-CCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++.+||.||+.+..... ...+..++++++++.+ ++.+..++.+.+
T Consensus 70 ~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~------- 137 (237)
T PRK11614 70 TDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFA-----ERDQFQERIKWVYELFPRLHERRIQRAGT------- 137 (237)
T ss_pred CCCCHHHHHHhCEEEeccCcccCCCCcHHHHHHHhhhcc-----ChhHHHHHHHHHHHHHHHHHHHHhCchhh-------
Confidence 53 14678999999999999999999998864321 1122334567788888 577666776655
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+.|||+++|++|+
T Consensus 138 -LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~ 214 (237)
T PRK11614 138 -MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLRE-QGMTIFLVEQNA-NQALKLADRGYVLENGH 214 (237)
T ss_pred -CCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHhhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~~~~~~~~ 225 (237)
T PRK11614 215 VVLEDTGDALL 225 (237)
T ss_pred EEeeCCHHHHh
Confidence 99999998764
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=344.98 Aligned_cols=219 Identities=21% Similarity=0.278 Sum_probs=187.4
Q ss_pred CcccCCcccccccc----ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVG----SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g----~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||+++|..+ ++++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~i~ 70 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEV-----KKGEFLVILGRN-----GSGKSTIAKHMNALLIP---SEGKVYVD 70 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEEC
Confidence 57899999998432 357999999999 677788888777 89999999999999998 58999999
Q ss_pred CEecCc-----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 93 GKPVEG-----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 93 G~~~~~-----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
|+++.. ..++.+|||+|++. .+...||.||+.|...... .++.+.+++++++++.+||.+..++.+++
T Consensus 71 g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--- 144 (280)
T PRK13633 71 GLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLG---IPPEEIRERVDESLKKVGMYEYRRHAPHL--- 144 (280)
T ss_pred CEeccccccHHHHhhheEEEecChhhhhccccHHHHHHhhHhhcC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc---
Confidence 998753 35788999999963 2334699999998764332 23344556789999999999888888776
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.. ||++++|
T Consensus 145 -----LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~-~~~~~-~d~v~~l 217 (280)
T PRK13633 145 -----LSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYM-EEAVE-ADRIIVM 217 (280)
T ss_pred -----CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCh-HHHhc-CCEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999997 46654 9999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 218 ~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 218 DSGKVVMEGTPKEIF 232 (280)
T ss_pred ECCEEEEecCHHHHh
Confidence 999999999999875
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-41 Score=333.56 Aligned_cols=210 Identities=29% Similarity=0.410 Sum_probs=176.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~- 64 (213)
T cd03235 1 EVEDLTVSY--GGHPVLEDVSFEV-----KPGEFLAIVGPN-----GAGKSTLLKAILGLLKP---TSGSIRVFGKPLE- 64 (213)
T ss_pred CcccceeEE--CCEEeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCccHH-
Confidence 578999987 5567999999999 677888888777 89999999999999998 5899999998775
Q ss_pred cccccEEEEecCCCCC--CCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 99 KFRSACGFMYQHDLFS--PSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 99 ~~r~~igyV~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
..++.++||+|++.+. +.+||+||+.+....... ......+..++++++++.+++.+..++.+++ ||||
T Consensus 65 ~~~~~i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG 136 (213)
T cd03235 65 KERKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGE--------LSGG 136 (213)
T ss_pred HHHhheEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCccc--------CCHH
Confidence 3567899999998763 348999999886432110 0011123345788999999998878888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++| +++.|
T Consensus 137 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 137 QQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRR-EGMTILVVTHDL-GLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999999999987 699999999996 6888899999999875 66554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-41 Score=335.08 Aligned_cols=214 Identities=22% Similarity=0.296 Sum_probs=177.8
Q ss_pred cccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|...+ .++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 68 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSI-----KKGETLGLVGES-----GSGKSTLARAILGLLKP---TSGSIIFDGKD 68 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEE
Confidence 56899999873211 27999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHH-HHHHHHHhCCC-cccCCccCCc
Q psy2519 96 VEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-INSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~-v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
+.. ..++.+||++|++ .+++.+||+||+.+........ ...+..+. ++++++.+++. +..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 145 (228)
T cd03257 69 LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKL--SKKEARKEAVLLLLVGVGLPEEVLNRYPHE- 145 (228)
T ss_pred ccccchhhHHHhhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCC--cHHHHHHHHHHHHHHHCCCChhHhhCCchh-
Confidence 753 2467899999997 5778899999998875443211 11122222 36889999995 567777666
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||+++
T Consensus 146 -------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~ 217 (228)
T cd03257 146 -------LSGGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDL-GVVAKIADRVA 217 (228)
T ss_pred -------cCHHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCeEE
Confidence 9999999999999999999999999999999999999999999999874489999999996 67888999999
Q ss_pred eecCCceEEec
Q psy2519 245 LLADSRTAFIG 255 (622)
Q Consensus 245 ~L~~G~iv~~G 255 (622)
+|++|+++..|
T Consensus 218 ~l~~G~i~~~g 228 (228)
T cd03257 218 VMYAGKIVEEG 228 (228)
T ss_pred EEeCCEEEecC
Confidence 99999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=342.64 Aligned_cols=221 Identities=21% Similarity=0.251 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~i~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 75 (265)
T PRK10575 11 TFALRNVSFRV--PGRTLLHPLSLTF-----PAGKVTGLIGHN-----GSGKSTLLKMLGRHQPP---SEGEILLDAQPL 75 (265)
T ss_pred eEEEeeEEEEE--CCEEEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCEeh
Confidence 35789999986 5668999999999 678888888777 89999999999999988 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.++|++|+..+++.+||.||+.+....... ......+..++++++++.++|.+..++.+++
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 147 (265)
T PRK10575 76 ESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDS-------- 147 (265)
T ss_pred hhCCHHHHhhheEEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc--------
Confidence 43 3567899999998888999999999875321100 0001122345688999999998888888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++|++
T Consensus 148 LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~-~~i~~~~d~i~~l~~G~i 226 (265)
T PRK10575 148 LSGGERQRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDI-NMAARYCDYLVALRGGEM 226 (265)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 227 ~~~~~~~~~~ 236 (265)
T PRK10575 227 IAQGTPAELM 236 (265)
T ss_pred EEecCHHHhc
Confidence 9999887653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=343.77 Aligned_cols=219 Identities=23% Similarity=0.325 Sum_probs=188.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i 73 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEI-----NEGEYVAILGHN-----GSGKSTISKILTGLLKP---QSGEIKIDGITI 73 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEec
Confidence 57899999997434567999999999 677788888777 89999999999999998 589999999998
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.+||++|++. .++.+||+||+.+...... ...++.+++++++++.+||.+..++.+.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 142 (271)
T PRK13632 74 SKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKK---VPPKKMKDIIDDLAKKVGMEDYLDKEPQN-------- 142 (271)
T ss_pred CcCCHHHHhcceEEEEeCHHHhcCcccHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCHHHhhCCccc--------
Confidence 53 35778999999974 6778999999998754321 12334456788999999999888888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.++|||++||++ +++ ..||++++|++|++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i 220 (271)
T PRK13632 143 LSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDM-DEA-ILADKVIVFSEGKL 220 (271)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEech-hHH-hhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874469999999997 456 47999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 221 ~~~g~~~~~~ 230 (271)
T PRK13632 221 IAQGKPKEIL 230 (271)
T ss_pred EEecCHHHHh
Confidence 9999988764
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=355.55 Aligned_cols=208 Identities=23% Similarity=0.291 Sum_probs=184.0
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE----ecCc----c-
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK----PVEG----K- 99 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~----~~~~----~- 99 (622)
+|...+++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+ ++.. .
T Consensus 34 ~g~~~~l~~vsf~i-----~~Gei~~I~G~n-----GsGKSTLlr~L~Gl~~p---~~G~I~idG~~~~~~i~~~~~~~l 100 (382)
T TIGR03415 34 TGLVVGVANASLDI-----EEGEICVLMGLS-----GSGKSSLLRAVNGLNPV---SRGSVLVKDGDGSIDVANCDAATL 100 (382)
T ss_pred hCCEEEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEECCEecccccccCCHHHH
Confidence 58888999999999 677788888776 89999999999999999 5899999997 3321 1
Q ss_pred --c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 100 --F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 100 --~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
. ++.+|||||++.++|.+||.||+.++..... .++.+.+++++++++.+||.+..++++++ |||||
T Consensus 101 ~~~r~~~i~~vfQ~~~l~p~~Tv~eNi~~~~~~~g---~~~~~~~~~a~e~le~vgL~~~~~~~~~~--------LSgGq 169 (382)
T TIGR03415 101 RRLRTHRVSMVFQKFALMPWLTVEENVAFGLEMQG---MPEAERRKRVDEQLELVGLAQWADKKPGE--------LSGGM 169 (382)
T ss_pred HHHhcCCEEEEECCCcCCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCHHH
Confidence 2 3689999999999999999999999865432 23455667889999999999888888766 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.+++||+++|++|+++..|+
T Consensus 170 ~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl-~e~~~l~DrI~vl~~G~iv~~g~ 248 (382)
T TIGR03415 170 QQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDL-DEALKIGNRIAIMEGGRIIQHGT 248 (382)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999999875699999999996 68889999999999999999999
Q ss_pred hHHHH
Q psy2519 257 KDAAL 261 (622)
Q Consensus 257 ~~~~~ 261 (622)
++++.
T Consensus 249 ~~ei~ 253 (382)
T TIGR03415 249 PEEIV 253 (382)
T ss_pred HHHHh
Confidence 98875
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=331.53 Aligned_cols=206 Identities=26% Similarity=0.366 Sum_probs=175.6
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||+++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i-----~~G~~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~ 67 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTI-----KKGEFVLIVGPN-----GSGKSTLLRLLNGLLGP---TSGEVLVDGKDLTK 67 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEEccc
Confidence 478999987322267999999999 677788888887 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 ----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.++|++|++. .++.+||+||+.+...... ....+..++++++++.++|.+..++.+++ ||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~~~~t~~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 136 (211)
T cd03225 68 LSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLG---LPEEEIEERVEEALELVGLEGLRDRSPFT--------LS 136 (211)
T ss_pred CCHHHHHhhceEEecChhhhcCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCcHhhhcCCccc--------CC
Confidence 35678999999974 4678899999988654321 12233445688999999998888888666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+
T Consensus 137 gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 137 GGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKA-EGKTIIIVTHDL-DLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999999999999987 599999999996 68888999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=341.71 Aligned_cols=209 Identities=22% Similarity=0.318 Sum_probs=182.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.+
T Consensus 11 ~~l~i~~l~~~~--~~~~il~~isl~i-----~~Ge~~~I~G~N-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~ 75 (257)
T PRK11247 11 TPLLLNAVSKRY--GERTVLNQLDLHI-----PAGQFVAVVGRS-----GCGKSTLLRLLAGLETP---SAGELLAGTAP 75 (257)
T ss_pred CcEEEEEEEEEE--CCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEE
Confidence 346789999987 5667999999999 677888888777 89999999999999998 58999999987
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+. ..++.++|++|++.+++.+||+||+.+... . ...++++++++.+||.+..++.+.+ ||||
T Consensus 76 ~~-~~~~~i~~v~q~~~l~~~~tv~enl~~~~~-------~--~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgG 137 (257)
T PRK11247 76 LA-EAREDTRLMFQDARLLPWKKVIDNVGLGLK-------G--QWRDAALQALAAVGLADRANEWPAA--------LSGG 137 (257)
T ss_pred HH-HhhCceEEEecCccCCCCCcHHHHHHhccc-------c--hHHHHHHHHHHHcCChhHhcCChhh--------CCHH
Confidence 64 356789999999999999999999988531 0 1234678899999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++++.|
T Consensus 138 qkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~-~~~~~~~d~i~~l~~G~i~~~~ 216 (257)
T PRK11247 138 QKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDV-SEAVAMADRVLLIEEGKIGLDL 216 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEeec
Confidence 999999999999999999999999999999999999999999765689999999996 5788899999999999999887
Q ss_pred ChH
Q psy2519 256 SKD 258 (622)
Q Consensus 256 ~~~ 258 (622)
+.+
T Consensus 217 ~~~ 219 (257)
T PRK11247 217 TVD 219 (257)
T ss_pred ccc
Confidence 654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=342.15 Aligned_cols=221 Identities=20% Similarity=0.261 Sum_probs=187.6
Q ss_pred CcccCCcccccccc-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
+++++||+++|..+ +.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i 68 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSI-----EEGETVGLLGRS-----GCGKSTLARLLLGLEKP---AQGTV 68 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEE
Confidence 46789999998432 467999999999 678888888777 89999999999999998 58999
Q ss_pred EECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 90 RVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 90 ~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
.++|+++.. ..++.+||++|++ .+++.+||+||+.+...... .....+..++++++++.+||. +..++
T Consensus 69 ~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 146 (265)
T TIGR02769 69 SFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLT--SLDESEQKARIAELLDMVGLRSEDADK 146 (265)
T ss_pred EECCEEccccCHHHHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHcCCChhhhhC
Confidence 999998753 1467899999986 47788999999987653211 112233456788999999996 66777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+++ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +.+.++
T Consensus 147 ~~~~--------LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~-~~~~~~ 217 (265)
T TIGR02769 147 LPRQ--------LSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDL-RLVQSF 217 (265)
T ss_pred Chhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHH
Confidence 7666 9999999999999999999999999999999999999999999999874589999999996 678889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 218 ~d~i~~l~~G~i~~~g~~~~~~ 239 (265)
T TIGR02769 218 CQRVAVMDKGQIVEECDVAQLL 239 (265)
T ss_pred hcEEEEEeCCEEEEECCHHHHc
Confidence 9999999999999999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=355.51 Aligned_cols=209 Identities=24% Similarity=0.367 Sum_probs=182.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
|+++ ||+++| |+..+ ++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~-~l~k~~--~~~~~--~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~iaGl~~p---~~G~I~~~g~~~ 62 (352)
T PRK11144 1 MLEL-NFKQQL--GDLCL--TVNLTL-----PAQGITAIFGRS-----GAGKTSLINAISGLTRP---QKGRIVLNGRVL 62 (352)
T ss_pred CeEE-EEEEEe--CCEEE--EEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEc
Confidence 3566 888886 55433 788888 577788888776 89999999999999998 489999999987
Q ss_pred Cc--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.+|||+|+..++|.+||+||+.++... ...++++++++.+||.+..++.+.+
T Consensus 63 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~~~~~~~~----- 128 (352)
T PRK11144 63 FDAEKGICLPPEKRRIGYVFQDARLFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPLLDRYPGS----- 128 (352)
T ss_pred cccccccccchhhCCEEEEcCCcccCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchhhhCCccc-----
Confidence 42 2467899999999999999999999986421 1235678999999999888888766
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|+|++|||+ +++.++||++++|++
T Consensus 129 ---LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~-~~~~~~~d~i~~l~~ 204 (352)
T PRK11144 129 ---LSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSL-DEILRLADRVVVLEQ 204 (352)
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999875589999999996 688999999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 205 G~i~~~g~~~~i~ 217 (352)
T PRK11144 205 GKVKAFGPLEEVW 217 (352)
T ss_pred CEEEEecCHHHHH
Confidence 9999999999875
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=337.64 Aligned_cols=215 Identities=21% Similarity=0.295 Sum_probs=185.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (242)
T PRK11124 3 IQLNGINCFY--GAHQALFDITLDC-----PQGETLVLLGPS-----GAGKSSLLRVLNLLEMP---RSGTLNIAGNHFD 67 (242)
T ss_pred EEEEeeEEEE--CCeeeEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecc
Confidence 5789999987 5668999999999 677788888776 89999999999999998 5899999999862
Q ss_pred ------c----cccccEEEEecCCCCCCCCCHHHHHHHH-HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 98 ------G----KFRSACGFMYQHDLFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 98 ------~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
. ..++.++|++|++.+++.+||.||+.+. ..... ....+..+++.++++.+||.+..++.+.+
T Consensus 68 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--- 141 (242)
T PRK11124 68 FSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLG---LSKDQALARAEKLLERLRLKPYADRFPLH--- 141 (242)
T ss_pred cccccchhhHHHHHhheEEEecCccccCCCcHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh---
Confidence 1 2467899999999999999999999753 22221 12233456788999999998888888766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++ .++.+++|++++|
T Consensus 142 -----LS~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l 214 (242)
T PRK11124 142 -----LSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAE-TGITQVIVTHEV-EVARKTASRVVYM 214 (242)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 6788899999999
Q ss_pred cCCceEEecChHHH
Q psy2519 247 ADSRTAFIGSKDAA 260 (622)
Q Consensus 247 ~~G~iv~~G~~~~~ 260 (622)
++|++++.|+++++
T Consensus 215 ~~g~i~~~~~~~~~ 228 (242)
T PRK11124 215 ENGHIVEQGDASCF 228 (242)
T ss_pred ECCEEEEeCCHHHh
Confidence 99999999988754
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=351.23 Aligned_cols=226 Identities=18% Similarity=0.199 Sum_probs=186.0
Q ss_pred CcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G 93 (622)
.++++||+++|.. |...+++++|+++ .+|+.+.|+|+| |||||||+++|+|++++. ...+|+|.++|
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i-----~~Ge~~~ivG~s-----GsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g 72 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTL-----TEGEIRGLVGES-----GSGKSLIAKAICGVTKDNWRVTADRMRFDD 72 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHccCCCCCCCcceEEEECC
Confidence 4689999999843 4567999999999 677788888776 899999999999999742 12589999999
Q ss_pred EecCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCC--Ccc-ccHHHHHHHHHHHHHHhCCCcc---c
Q psy2519 94 KPVEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKL--DRR-VKAYQRIALINSLLIELGLMNS---Q 157 (622)
Q Consensus 94 ~~~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~--~~~-~~~~~~~~~v~~~l~~lgL~~~---~ 157 (622)
+++.. + .++.++||||++. +.|.+||.+++........ ... ....+.++++.++++.+||.+. .
T Consensus 73 ~~i~~~~~~~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~ 152 (330)
T PRK15093 73 IDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAM 152 (330)
T ss_pred EECCcCCHHHHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHH
Confidence 98753 1 2357999999975 7899999999986432111 000 0112345678899999999753 4
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++||+||||+|||+.++.++.++|++++++.|.|||++|||+ ..+.
T Consensus 153 ~~~p~~--------LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl-~~v~ 223 (330)
T PRK15093 153 RSFPYE--------LTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDL-QMLS 223 (330)
T ss_pred hCCchh--------CCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHH
Confidence 566444 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++|||+++|++|++++.|+++++.
T Consensus 224 ~~~dri~vm~~G~ive~g~~~~i~ 247 (330)
T PRK15093 224 QWADKINVLYCGQTVETAPSKELV 247 (330)
T ss_pred HhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999998764
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=342.56 Aligned_cols=217 Identities=21% Similarity=0.316 Sum_probs=186.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~~-~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~~ 67 (275)
T PRK13639 2 LETRDLKYSYP-DGTEALKGINFKA-----EKGEMVALLGPN-----GAGKSTLFLHFNGILKP---TSGEVLIKGEPIK 67 (275)
T ss_pred EEEEEEEEEeC-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEECc
Confidence 57899999973 3457999999999 678888888887 89999999999999998 4899999999874
Q ss_pred c------cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 98 G------KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
. ..++.+||++|++. .+...||.||+.+...... ...++..+++.++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------- 137 (275)
T PRK13639 68 YDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLG---LSKEEVEKRVKEALKAVGMEGFENKPPHH------- 137 (275)
T ss_pred cccchHHHHHhheEEEeeChhhhhccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchhhcCChhh-------
Confidence 2 24678999999963 3345799999988643221 23344556788999999999888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ +|.|||++||++ +++.++||++++|++|+
T Consensus 138 -LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~-~~~til~vtH~~-~~~~~~~d~i~~l~~G~ 214 (275)
T PRK13639 138 -LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNK-EGITIIISTHDV-DLVPVYADKVYVMSDGK 214 (275)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 599999999996 67888999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (275)
T PRK13639 215 IIKEGTPKEVF 225 (275)
T ss_pred EEEeCCHHHHh
Confidence 99999999875
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=342.18 Aligned_cols=223 Identities=22% Similarity=0.311 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|+...+|+|.++|+++
T Consensus 4 ~l~~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~ 71 (262)
T PRK09984 4 IIRVEKLAKTF--NQHQALHAVDLNI-----HHGEMVALLGPS-----GSGKSTLLRHLSGLITGDKSAGSHIELLGRTV 71 (262)
T ss_pred EEEEeeEEEEe--CCeEEEecceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCCCCCCceEEEECCEec
Confidence 47899999986 6678999999999 677888888777 89999999999999987421369999999987
Q ss_pred Cc---------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 97 EG---------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 97 ~~---------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
.. ..++.++|++|++.+++.+||.||+.+......+. .....+.+++++++++.+||.+..++.++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 151 (262)
T PRK09984 72 QREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVS 151 (262)
T ss_pred ccccccchhHHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 42 23567999999999999999999998764211000 00112344578899999999888888877
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||+
T Consensus 152 ~--------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~-~~~~~~~d~ 222 (262)
T PRK09984 152 T--------LSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQV-DYALRYCER 222 (262)
T ss_pred c--------cCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCE
Confidence 6 9999999999999999999999999999999999999999999999875689999999996 678899999
Q ss_pred eeeecCCceEEecChHHH
Q psy2519 243 IILLADSRTAFIGSKDAA 260 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~ 260 (622)
+++|++|++++.|+++++
T Consensus 223 i~~l~~g~i~~~g~~~~~ 240 (262)
T PRK09984 223 IVALRQGHVFYDGSSQQF 240 (262)
T ss_pred EEEEECCEEEEeCCHHHh
Confidence 999999999999998753
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-41 Score=336.00 Aligned_cols=213 Identities=24% Similarity=0.320 Sum_probs=183.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (230)
T TIGR03410 1 LEVSNLNVYY--GQSHILRGVSLEV-----PKGEVTCVLGRN-----GVGKTTLLKTLMGLLPV---KSGSIRLDGEDIT 65 (230)
T ss_pred CEEEeEEEEe--CCeEEecceeeEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEECC
Confidence 3678999986 5668999999999 678888888877 89999999999999998 5899999999875
Q ss_pred c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCccc
Q psy2519 98 G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~~g 171 (622)
. . .++.+||++|++.+++.+|+.||+.+...... .. ..+.++++++.++ +.+..++.+.+
T Consensus 66 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~---~~---~~~~~~~~l~~~~~l~~~~~~~~~~-------- 131 (230)
T TIGR03410 66 KLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALP---RR---SRKIPDEIYELFPVLKEMLGRRGGD-------- 131 (230)
T ss_pred CCCHHHHHHhCeEEeccCCcccCCCcHHHHHHHHHHhcC---cc---hHHHHHHHHHHHHhHHHHhhCChhh--------
Confidence 3 1 35679999999999999999999998754331 11 1233567788876 56667777666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||+++++++|++
T Consensus 132 LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~g~i 210 (230)
T TIGR03410 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYL-DFARELADRYYVMERGRV 210 (230)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 688889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
+..|+++++
T Consensus 211 ~~~~~~~~~ 219 (230)
T TIGR03410 211 VASGAGDEL 219 (230)
T ss_pred EEECCHHHc
Confidence 999998865
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=332.14 Aligned_cols=209 Identities=24% Similarity=0.353 Sum_probs=177.8
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||+++|..+ ..++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 68 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSI-----GKGEIVAIVGSS-----GSGKSTLLHLLGGLDNP---TSGEVLFNGQS 68 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 4689999997422 257999999999 678888888887 89999999999999998 59999999998
Q ss_pred cCc----c---cc-ccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 96 VEG----K---FR-SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 96 ~~~----~---~r-~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+.. . ++ +.++||+|++.+++.+||+||+.+....+. ....+..+++.++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~---- 141 (221)
T TIGR02211 69 LSKLSSNERAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGK---KSVKEAKERAYEMLEKVGLEHRINHRPSE---- 141 (221)
T ss_pred hhhcCHhHHHHHHHhcEEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh----
Confidence 753 1 22 679999999999999999999998754332 12233455678999999998888888666
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .+|++++|+
T Consensus 142 ----LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~-~~~~-~~d~v~~l~ 215 (221)
T TIGR02211 142 ----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDL-ELAK-KLDRVLEMK 215 (221)
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHh-hcCEEEEEe
Confidence 9999999999999999999999999999999999999999999999875589999999997 4664 589999999
Q ss_pred CCceE
Q psy2519 248 DSRTA 252 (622)
Q Consensus 248 ~G~iv 252 (622)
+|+++
T Consensus 216 ~G~i~ 220 (221)
T TIGR02211 216 DGQLF 220 (221)
T ss_pred CCEec
Confidence 99875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=354.32 Aligned_cols=209 Identities=23% Similarity=0.359 Sum_probs=182.1
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--- 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--- 98 (622)
||+++| |+..+ ++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 4 ~l~~~~--~~~~~--~isl~i-----~~Gei~~l~G~n-----GsGKSTLl~~iaGl~~p---~~G~I~~~g~~i~~~~~ 66 (354)
T TIGR02142 4 RFSKRL--GDFSL--DADFTL-----PGQGVTAIFGRS-----GSGKTTLIRLIAGLTRP---DEGEIVLNGRTLFDSRK 66 (354)
T ss_pred EEEEEE--CCEEE--EEEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEECccCcc
Confidence 677775 66544 888888 577788888776 89999999999999998 58999999998742
Q ss_pred -----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 -----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 -----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.+|||+|++.+++.+||+||+.|+.... ...+..++++++++.+||.+..++.+.+ ||
T Consensus 67 ~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~-----~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------LS 133 (354)
T TIGR02142 67 GIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRA-----RPSERRISFERVIELLGIGHLLGRLPGR--------LS 133 (354)
T ss_pred ccccchhhCCeEEEecCCccCCCCcHHHHHHHHhhcc-----ChhHHHHHHHHHHHHcCChhHhcCChhh--------CC
Confidence 24678999999999999999999999875432 1233455788999999999888888776 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++||++ +++.+++|++++|++|+++.
T Consensus 134 gGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~-~~~~~~~d~i~~l~~G~i~~ 212 (354)
T TIGR02142 134 GGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSL-QEVLRLADRVVVLEDGRVAA 212 (354)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEE
Confidence 99999999999999999999999999999999999999999999875589999999996 68889999999999999999
Q ss_pred ecChHHHH
Q psy2519 254 IGSKDAAL 261 (622)
Q Consensus 254 ~G~~~~~~ 261 (622)
.|+++++.
T Consensus 213 ~g~~~~~~ 220 (354)
T TIGR02142 213 AGPIAEVW 220 (354)
T ss_pred ECCHHHHh
Confidence 99998765
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=340.88 Aligned_cols=219 Identities=20% Similarity=0.247 Sum_probs=187.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++|..+..++++++|+++ ++|+.++|+|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~~~ 73 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNI-----PKGQWTSIVGHN-----GSGKSTIAKLMIGIEKV---KSGEIFYNNQAI 73 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997422346899999999 678888888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+||++|++. +++..|+.+|+.+...... ...++..++++++++.+++.+..++.+.+
T Consensus 74 ~~~~~~~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 142 (269)
T PRK13648 74 TDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHA---VPYDEMHRRVSEALKQVDMLERADYEPNA-------- 142 (269)
T ss_pred CcCCHHHHHhheeEEEeChHHhcccccHHHHHHhhHHhcC---CCHHHHHHHHHHHHHHcCCchhhhCCccc--------
Confidence 53 35778999999974 7788899999988754322 12334456788999999999888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.. |||+++|++|++
T Consensus 143 LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~-~~~~~-~d~i~~l~~G~i 220 (269)
T PRK13648 143 LSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDL-SEAME-ADHVIVMNKGTV 220 (269)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCc-hHHhc-CCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999999874589999999997 56654 999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 221 ~~~g~~~~~~ 230 (269)
T PRK13648 221 YKEGTPTEIF 230 (269)
T ss_pred EEecCHHHHh
Confidence 9999998764
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=331.06 Aligned_cols=209 Identities=25% Similarity=0.358 Sum_probs=177.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.. .++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~--~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~gl~~~---~~G~i~~~g~~~~ 63 (211)
T cd03298 1 VRLDKIRFSY--GEQP--MHFDLTF-----AQGEITAIVGPS-----GSGKSTLLNLIAGFETP---QSGRVLINGVDVT 63 (211)
T ss_pred CEEEeEEEEe--CCEe--cceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEcC
Confidence 3678999986 4443 2888888 577788888887 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++.+++.+||+||+.+....... . .++.+++++++++.+||.+..++.+.+ ||||
T Consensus 64 ~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~--~-~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 132 (211)
T cd03298 64 AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSPGLK--L-TAEDRQAIEVALARVGLAGLEKRLPGE--------LSGG 132 (211)
T ss_pred cCCHhHccEEEEecccccCCCCcHHHHHhcccccccC--c-cHHHHHHHHHHHHHcCCHHHHhCCccc--------CCHH
Confidence 4 2457899999999999999999999886432211 1 123345688999999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|+++..|
T Consensus 133 ~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 133 ERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQP-EDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999999999999875689999999996 6888899999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=332.58 Aligned_cols=217 Identities=33% Similarity=0.512 Sum_probs=183.9
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC---CCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI---DDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~---~~~~~~G~I~~ 91 (622)
..+++||++.|+.- .+++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ | .+|+|.+
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~G~~~~~~~---~~G~i~~ 69 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHV-----ESGQVMAILGSS-----GSGKTTLLDAISGRVEGGGT---TSGQILF 69 (226)
T ss_pred cceeecceeeeecCccccccccCceEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCccCCCCC---CceEEEE
Confidence 35689999998422 368999999999 677788888777 8999999999999998 6 5899999
Q ss_pred CCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHH-HHHHhCCCcccCCccCCcCCCCc
Q psy2519 92 NGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINS-LLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 92 ~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~-~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
+|+++.. ..++.+||++|++.+++.+||+||+.+......+.........+++++ .++.+++.+..++.+++
T Consensus 70 ~g~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------ 143 (226)
T cd03234 70 NGQPRKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKG------ 143 (226)
T ss_pred CCEECChHHhcccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccC------
Confidence 9998764 467889999999999999999999998765432211122223334555 89999998888887766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|+|++||++..++.+.||++++|++|
T Consensus 144 --LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~i~~l~~G 220 (226)
T cd03234 144 --ISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLAR-RNRIVILTIHQPRSDLFRLFDRILLLSSG 220 (226)
T ss_pred --cCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999987 58999999999645789999999999999
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 221 ~i~~~g 226 (226)
T cd03234 221 EIVYSG 226 (226)
T ss_pred EEEecC
Confidence 999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=330.91 Aligned_cols=207 Identities=24% Similarity=0.352 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~~s~~i-----~~G~~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (213)
T cd03262 1 IEIKNLHKSF--GDFHVLKGIDLTV-----KKGEVVVIIGPS-----GSGKSTLLRCINLLEEP---DSGTIIIDGLKLT 65 (213)
T ss_pred CEEEEEEEEE--CCeEeecCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEECC
Confidence 3678999986 5577999999999 678888888887 89999999999999998 5899999999873
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+|+.||+.+...... .....+..++++++++.+|+.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 135 (213)
T cd03262 66 DDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVK--GMSKAEAEERALELLEKVGLADKADAYPAQ-------- 135 (213)
T ss_pred ccchhHHHHHhcceEEecccccCCCCcHHHHHHhHHHHhc--CCCHHHHHHHHHHHHHHcCCHhHhhhCccc--------
Confidence 2 256789999999999999999999988643211 112334456788999999998888888666
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.++||++++|++|++
T Consensus 136 LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tvi~~sh~~-~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 136 LSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAE-EGMTMVVVTHEM-GFAREVADRVIFMDDGRI 213 (213)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999999999999987 689999999996 688899999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=342.77 Aligned_cols=222 Identities=18% Similarity=0.237 Sum_probs=188.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 6 ~~l~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~ 70 (265)
T PRK10253 6 ARLRGEQLTLGY--GKYTVAENLTVEI-----PDGHFTAIIGPN-----GCGKSTLLRTLSRLMTP---AHGHVWLDGEH 70 (265)
T ss_pred cEEEEEEEEEEE--CCEEEeeecceEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCcEEEECCEE
Confidence 356789999997 5677999999999 677788888777 89999999999999998 58999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+||++|++.+++.+||+||+.+......+ .....+...++++++++.+||.+..++.+.+
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 143 (265)
T PRK10253 71 IQHYASKEVARRIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT------- 143 (265)
T ss_pred hhhCCHHHHhhheEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCccc-------
Confidence 753 3456899999999999999999999875311100 0001122345678999999998888888766
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++|+
T Consensus 144 -LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~-~~~~~~~d~i~~l~~G~ 221 (265)
T PRK10253 144 -LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDL-NQACRYASHLIALREGK 221 (265)
T ss_pred -CChHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999874589999999996 68889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 222 i~~~g~~~~~~ 232 (265)
T PRK10253 222 IVAQGAPKEIV 232 (265)
T ss_pred EEEeCCHHHHh
Confidence 99999988764
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=340.39 Aligned_cols=219 Identities=24% Similarity=0.330 Sum_probs=186.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (255)
T PRK11231 3 LRTENLTVGY--GTKRILNDLSLSL-----PTGKITALIGPN-----GCGKSTLLKCFARLLTP---QSGTVFLGDKPIS 67 (255)
T ss_pred EEEEeEEEEE--CCEEEEeeeeeEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CCcEEEECCEEhH
Confidence 6789999986 6678999999999 677788888887 89999999999999988 5899999999874
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.+||++|+..+++.+|+.||+.++...... ......+..++++++++.+||.+..++.+++ |
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 139 (255)
T PRK11231 68 MLSSRQLARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTD--------L 139 (255)
T ss_pred HCCHHHHhhheEEecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCccc--------C
Confidence 3 3567799999999888999999999885311000 0011123345678999999998888888766 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|+++
T Consensus 140 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~-~~~tiii~tH~~-~~~~~~~d~i~~l~~G~i~ 217 (255)
T PRK11231 140 SGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNT-QGKTVVTVLHDL-NQASRYCDHLVVLANGHVM 217 (255)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHHHHhcCEEEEEECCeEE
Confidence 99999999999999999999999999999999999999999999987 589999999996 6888999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 218 ~~~~~~~~~ 226 (255)
T PRK11231 218 AQGTPEEVM 226 (255)
T ss_pred EEcCHHHhc
Confidence 999887653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=340.75 Aligned_cols=222 Identities=19% Similarity=0.275 Sum_probs=188.2
Q ss_pred CCcccCCccccccc-------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 16 NNEEVPNVDFSEIV-------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 16 ~~~~~~~~~~~~~~-------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
.+++++||+++|.. |+.++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~Gl~~p---~~G~ 69 (267)
T PRK15112 3 TLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTL-----REGQTLAIIGEN-----GSGKSTLAKMLAGMIEP---TSGE 69 (267)
T ss_pred ceEEEeceEEEecCCCCcccccccceeeeeeEEe-----cCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CCCE
Confidence 35789999999842 2357999999999 678888888887 89999999999999998 5899
Q ss_pred EEECCEecCc----cccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 89 IRVNGKPVEG----KFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 89 I~~~G~~~~~----~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
|.++|+++.. ..++.+|||+|++. +++.+||.|++.+..+.... ....+..++++++++.+||. +..++.+
T Consensus 70 i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 147 (267)
T PRK15112 70 LLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTD--LEPEQREKQIIETLRQVGLLPDHASYYP 147 (267)
T ss_pred EEECCEECCCCchhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCCChHHHhcCc
Confidence 9999998753 23467999999874 67889999999887654321 12334456788999999994 5667776
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.+ ||||||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||
T Consensus 148 ~~--------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~-~~~~~~~d 218 (267)
T PRK15112 148 HM--------LAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHL-GMMKHISD 218 (267)
T ss_pred hh--------cCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHHHhcC
Confidence 65 9999999999999999999999999999999999999999999999875589999999996 68888999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++++|++|+++..|+++++.
T Consensus 219 ~i~~l~~G~i~~~~~~~~~~ 238 (267)
T PRK15112 219 QVLVMHQGEVVERGSTADVL 238 (267)
T ss_pred EEEEEECCEEEecCCHHHHh
Confidence 99999999999999888664
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=334.77 Aligned_cols=216 Identities=20% Similarity=0.328 Sum_probs=184.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.. .++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--~~~~--~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 63 (232)
T PRK10771 1 MLKLTDITWLY--HHLP--MRFDLTV-----ERGERVAILGPS-----GAGKSTLLNLIAGFLTP---ASGSLTLNGQDH 63 (232)
T ss_pred CeEEEEEEEEE--CCcc--ceeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCeec
Confidence 35789999997 3333 3788888 578888888887 89999999999999998 589999999987
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.++|++|++.+++.+|+.||+.+...... ... +...+++.++++.+||.+..++.+.+ |||
T Consensus 64 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 132 (232)
T PRK10771 64 TTTPPSRRPVSMLFQENNLFSHLTVAQNIGLGLNPGL--KLN-AAQREKLHAIARQMGIEDLLARLPGQ--------LSG 132 (232)
T ss_pred CcCChhhccEEEEecccccccCCcHHHHHhccccccc--CCC-HHHHHHHHHHHHHcCcHHHHhCCccc--------CCH
Confidence 54 235679999999999999999999987532111 111 23355688999999998888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.
T Consensus 133 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~ 211 (232)
T PRK10771 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSL-EDAARIAPRSLVVADGRIAWD 211 (232)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875589999999996 678889999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 212 g~~~~~~ 218 (232)
T PRK10771 212 GPTDELL 218 (232)
T ss_pred CCHHHHH
Confidence 9988664
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=336.59 Aligned_cols=221 Identities=23% Similarity=0.318 Sum_probs=185.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++|+
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14247 3 KIEIRDLKVSF--GQVEVLDGVNLEI-----PDNTITALMGPS-----GSGKSTLLRVFNRLIELYPEARVSGEVYLDGQ 70 (250)
T ss_pred eEEEEeeEEEE--CCeeeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCCCCCCCCceEEEECCE
Confidence 46889999986 5667999999999 677788888777 899999999999998741 115899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~ 166 (622)
++.. .+++.+||++|++.+++.+||.||+.+....... .....+..+++.++++.+||.+ ..++.+.+
T Consensus 71 ~i~~~~~~~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 146 (250)
T PRK14247 71 DIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRL-VKSKKELQERVRWALEKAQLWDEVKDRLDAPAGK--- 146 (250)
T ss_pred ECCcCCHHHHhccEEEEeccCccCCCCcHHHHHHHHHHhccc-cCCHHHHHHHHHHHHHHcCCCcchhhhhcCCccc---
Confidence 8753 3567899999999889999999999987543211 0122344567889999999864 34666555
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.+.||++++|
T Consensus 147 -----LSgG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~~l 218 (250)
T PRK14247 147 -----LSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKK--DMTIVLVTHFP-QQAARISDYVAFL 218 (250)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCEEEEE
Confidence 999999999999999999999999999999999999999999999953 79999999996 5788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 219 ~~G~i~~~g~~~~~~ 233 (250)
T PRK14247 219 YKGQIVEWGPTREVF 233 (250)
T ss_pred ECCeEEEECCHHHHH
Confidence 999999999988764
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=340.84 Aligned_cols=217 Identities=22% Similarity=0.311 Sum_probs=184.1
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||+++|..++ .++++++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~ 69 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTI-----EDGSYTAFIGHT-----GSGKSTIMQLLNGLHVP---TQGSVRVDDT 69 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 57899999974222 46999999999 677888888887 89999999999999998 5899999999
Q ss_pred ecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 95 PVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++.. ..++.+||++|++ .+++ .||+||+.+...... ...++..++++++++.+||. +..++.+++
T Consensus 70 ~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 145 (280)
T PRK13649 70 LITSTSKNKDIKQIRKKVGLVFQFPESQLFE-ETVLKDVAFGPQNFG---VSQEEAEALAREKLALVGISESLFEKNPFE 145 (280)
T ss_pred EccccccccCHHHHHhheEEEeeChhhhhcc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhhhhCCccc
Confidence 8742 2467899999986 4554 699999998754321 12334456688999999997 456777666
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++
T Consensus 146 --------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~-~~~~~~~d~i 215 (280)
T PRK13649 146 --------LSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQ-SGMTIVLVTHLM-DDVANYADFV 215 (280)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999987 589999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (280)
T PRK13649 216 YVLEKGKLVLSGKPKDIF 233 (280)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=333.90 Aligned_cols=219 Identities=21% Similarity=0.207 Sum_probs=183.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~~ 95 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~~ 65 (243)
T TIGR01978 1 LKIKDLHVSV--EDKEILKGVNLTV-----KKGEIHAIMGPN-----GSGKSTLSKTIAGHPSYEV---TSGTILFKGQD 65 (243)
T ss_pred CeEeeEEEEE--CCEEEEeccceEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CcceEEECCEe
Confidence 3689999997 5677999999999 677788888777 899999999999995 56 58999999998
Q ss_pred cCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC--c--cccHHHHHHHHHHHHHHhCCC-cccCCccC-Cc
Q psy2519 96 VEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD--R--RVKAYQRIALINSLLIELGLM-NSQHTRIG-SS 164 (622)
Q Consensus 96 ~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~--~--~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~~ 164 (622)
+.. . .+..++||+|++.+++.+|++|++.+....... . .....+..++++++++.+||. +..++.+. +
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~- 144 (243)
T TIGR01978 66 LLELEPDERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEG- 144 (243)
T ss_pred cCCCCHHHhhccceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccC-
Confidence 753 1 244599999999999999999999886543210 0 012233346788999999997 45666654 3
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccce
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKI 243 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.+. ||++
T Consensus 145 -------LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tvi~vsH~~-~~~~~~~~d~i 215 (243)
T TIGR01978 145 -------FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE-PDRSFLIITHYQ-RLLNYIKPDYV 215 (243)
T ss_pred -------cCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHH-CCcEEEEEEecH-HHHHhhcCCeE
Confidence 999999999999999999999999999999999999999999999986 689999999996 677777 8999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~i~~~g~~~~~~ 233 (243)
T TIGR01978 216 HVLLDGRIVKSGDVELAK 233 (243)
T ss_pred EEEeCCEEEEecCHHHhc
Confidence 999999999999987543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=337.50 Aligned_cols=218 Identities=20% Similarity=0.293 Sum_probs=183.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 12 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 79 (258)
T PRK14268 12 QIKVENLNLWY--GEKQALKNVSMQI-----PKNSVTALIGPS-----GCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGE 79 (258)
T ss_pred eEEEeeeEEEe--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCcccCCCcceEEEECCE
Confidence 57789999986 6677999999999 677788888777 8999999999999987510 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ +||+||+.+...... .+.++..++++++++.+++. +..++.+++
T Consensus 80 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 154 (258)
T PRK14268 80 DIYEPDVDVVELRKNVGMVFQKPNPFP-MSIYDNVAYGPRIHG---ANKKDLDGVVENALRSAALWDETSDRLKSPALS- 154 (258)
T ss_pred EcccccchHHHHhhhEEEEecCCccCc-ccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCCcchhhhhcCChhh-
Confidence 8742 24678999999988888 899999998754432 12333445688899999984 345666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||+++
T Consensus 155 -------LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~--~~tiiivsH~~-~~~~~~~d~i~ 224 (258)
T PRK14268 155 -------LSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKK--DYTIVIVTHNM-QQAARISDYTG 224 (258)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999963 79999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 225 ~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 225 FFLMGELIEFGQTRQIF 241 (258)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988764
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=337.70 Aligned_cols=221 Identities=19% Similarity=0.267 Sum_probs=184.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~ 92 (622)
..+++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|.. ..+|+|.++
T Consensus 5 ~~~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~ 72 (254)
T PRK14273 5 EAIIETENLNLFY--TDFKALNNINIKI-----LKNSITALIGPS-----GCGKSTFLRTLNRMNDLVEGIKIEGNVIYE 72 (254)
T ss_pred CceEEEeeeEEEe--CCceeecceeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccCCcCCCCceEEEEC
Confidence 3467899999987 5567999999999 678888888777 8999999999999998620 138999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+||++|++.+++ +||+||+.+....... ....+..++++++++.+++. +..++.+.
T Consensus 73 g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 149 (254)
T PRK14273 73 GKNIYSNNFDILELRRKIGMVFQTPNPFL-MSIYDNISYGPKIHGT--KDKKKLDEIVEQSLKKSALWNEVKDKLNTNAL 149 (254)
T ss_pred CEecccccccHHHHhhceEEEeecccccc-CcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhCCchhhHHHHhCCcc
Confidence 998742 35678999999988875 8999999987543211 12233456678899999873 44566655
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++||
T Consensus 150 ~--------LSgG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~sH~~-~~~~~~~d~ 218 (254)
T PRK14273 150 S--------LSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKE--SYTIIIVTHNM-QQAGRISDR 218 (254)
T ss_pred c--------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999953 68999999996 678889999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|+++..|+++++.
T Consensus 219 i~~l~~G~i~~~g~~~~~~ 237 (254)
T PRK14273 219 TAFFLNGCIEEESSTDELF 237 (254)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999998764
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=332.66 Aligned_cols=202 Identities=22% Similarity=0.324 Sum_probs=175.1
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEE
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACG 105 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~ig 105 (622)
+|+.++|+++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.. ..++.++
T Consensus 31 ~~~~~il~~vs~~i-----~~Ge~~~i~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~i~ 97 (236)
T cd03267 31 YREVEALKGISFTI-----EKGEIVGFIGPN-----GAGKTTTLKILSGLLQP---TSGEVRVAGLVPWKRRKKFLRRIG 97 (236)
T ss_pred cCCeeeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEccccchhhcccEE
Confidence 47778999999999 677788888887 89999999999999998 58999999997643 3567899
Q ss_pred EEe-cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 106 FMY-QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 106 yV~-Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
|++ |++.+++.+||+||+.+...... ....+..++++++++.+||.+..++.+.+ ||||||||++||+
T Consensus 98 ~~~~~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------LS~G~~qrl~la~ 166 (236)
T cd03267 98 VVFGQKTQLWWDLPVIDSFYLLAAIYD---LPPARFKKRLDELSELLDLEELLDTPVRQ--------LSLGQRMRAEIAA 166 (236)
T ss_pred EEcCCccccCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChhh--------CCHHHHHHHHHHH
Confidence 998 45678899999999998765432 12333455678899999999888888777 9999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
+|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++|++++.|
T Consensus 167 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 167 ALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYM-KDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCH-HHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999999999999999999999875589999999996 6788999999999999998765
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=336.06 Aligned_cols=213 Identities=22% Similarity=0.283 Sum_probs=183.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 67 (241)
T PRK14250 3 EIEFKEVSYSS--FGKEILKDISVKF-----EGGAIYTIVGPS-----GAGKSTLIKLINRLIDP---TEGSILIDGVDI 67 (241)
T ss_pred eEEEEeEEEEe--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEh
Confidence 46789999986 5677999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.++|++|++.+++ .||+||+.+...... . ..+++.++++.++|. +..++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~----~---~~~~~~~~l~~~~l~~~~~~~~~~~-------- 131 (241)
T PRK14250 68 KTIDVIDLRRKIGMVFQQPHLFE-GTVKDNIEYGPMLKG----E---KNVDVEYYLSIVGLNKEYATRDVKN-------- 131 (241)
T ss_pred hhcChHHhhhcEEEEecCchhch-hhHHHHHhcchhhcC----c---HHHHHHHHHHHcCCCHHHhhCCccc--------
Confidence 53 35678999999988887 699999987543221 1 134577899999996 566777555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++||++++|++|++
T Consensus 132 LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~-~~~~~~~d~i~~l~~G~i 210 (241)
T PRK14250 132 LSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNM-EQAKRIGDYTAFLNKGIL 210 (241)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccH-HHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 678889999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 211 ~~~~~~~~~~ 220 (241)
T PRK14250 211 VEYAKTYDFF 220 (241)
T ss_pred EEeCCHHHHh
Confidence 9999988764
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=337.92 Aligned_cols=219 Identities=24% Similarity=0.309 Sum_probs=186.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 66 (256)
T TIGR03873 2 LRLSRVSWSA--GGRLIVDGVDVTA-----PPGSLTGLLGPN-----GSGKSTLLRLLAGALRP---DAGTVDLAGVDLH 66 (256)
T ss_pred ceEEeEEEEE--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCCEEEECCEEcc
Confidence 4689999986 6678999999999 678888888887 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.++|++|++.+++.+||+||+.++...... ......+..+++.++++.+++.+..++.+.+ |
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 138 (256)
T TIGR03873 67 GLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMST--------L 138 (256)
T ss_pred cCCHHHHhhheEEecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCccc--------C
Confidence 4 3466799999998888889999999885311100 0011122345688999999998888888776 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++
T Consensus 139 S~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~ 216 (256)
T TIGR03873 139 SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAA-TGVTVVAALHDL-NLAASYCDHVVVLDGGRVV 216 (256)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEeCCCEE
Confidence 99999999999999999999999999999999999999999999986 689999999996 6888999999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 217 ~~g~~~~~~ 225 (256)
T TIGR03873 217 AAGPPREVL 225 (256)
T ss_pred EecCHHHhh
Confidence 999988653
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=331.57 Aligned_cols=209 Identities=25% Similarity=0.317 Sum_probs=183.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+++| .+|+|.++|+++.
T Consensus 1 l~l~~v~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~~~~~~ 65 (223)
T TIGR03740 1 LETKNLSKRF--GKQTAVNNISLTV-----PKNSVYGLLGPN-----GAGKSTLLKMITGILRP---TSGEIIFDGHPWT 65 (223)
T ss_pred CEEEeEEEEE--CCEEEEeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEecc
Confidence 3678999986 5678999999999 677788888777 89999999999999998 5999999999876
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|++.+++.+|++||+.+...... .. .+++.++++.+||.+..++.+.+ ||||||
T Consensus 66 ~~~~~~~~~~~q~~~~~~~~t~~~~~~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 130 (223)
T TIGR03740 66 RKDLHKIGSLIESPPLYENLTARENLKVHTTLLG---LP----DSRIDEVLNIVDLTNTGKKKAKQ--------FSLGMK 130 (223)
T ss_pred ccccccEEEEcCCCCccccCCHHHHHHHHHHHcC---CC----HHHHHHHHHHcCCcHHHhhhHhh--------CCHHHH
Confidence 4334579999999999999999999988764432 11 23567899999999888888766 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +++.+.|||+++|++|+++..|++
T Consensus 131 ~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~g~i~~~~~~ 208 (223)
T TIGR03740 131 QRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPE-QGITVILSSHIL-SEVQQLADHIGIISEGVLGYQGKI 208 (223)
T ss_pred HHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHhcCEEEEEeCCEEEEecCh
Confidence 999999999999999999999999999999999999999986 689999999996 678889999999999999999986
Q ss_pred H
Q psy2519 258 D 258 (622)
Q Consensus 258 ~ 258 (622)
.
T Consensus 209 ~ 209 (223)
T TIGR03740 209 N 209 (223)
T ss_pred h
Confidence 5
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=339.89 Aligned_cols=219 Identities=19% Similarity=0.275 Sum_probs=187.8
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++||+++|... +.++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~ 70 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSI-----TKGEWVSIIGQN-----GSGKSTTARLIDGLFEE---FEGKVKIDGEL 70 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCCEEEECCEE
Confidence 46799999998422 246899999999 678888888887 89999999999999998 58999999998
Q ss_pred cCc----cccccEEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.+||++|++. +++..||.||+.++..... ..+.+..++++++++.+||.+..++.+..
T Consensus 71 i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 140 (277)
T PRK13642 71 LTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQG---IPREEMIKRVDEALLAVNMLDFKTREPAR------- 140 (277)
T ss_pred CCcCCHHHHhcceEEEEECHHHhhccCCHHHHHHhhHHHcC---CCHHHHHHHHHHHHHHCCCHhHhhCCccc-------
Confidence 753 35788999999974 6778899999988654321 23344456788999999998888887666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++. .+|++++|++|+
T Consensus 141 -LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~-~~~~-~~d~i~~l~~G~ 217 (277)
T PRK13642 141 -LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDL-DEAA-SSDRILVMKAGE 217 (277)
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH-hCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999999875599999999996 5664 699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 218 i~~~g~~~~~~ 228 (277)
T PRK13642 218 IIKEAAPSELF 228 (277)
T ss_pred EEEeCCHHHHh
Confidence 99999998765
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=327.55 Aligned_cols=210 Identities=20% Similarity=0.315 Sum_probs=179.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|. . .+.++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 ~~~~~l~~~~~--~--~~~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 63 (213)
T TIGR01277 1 LALDKVRYEYE--H--LPMEFDLNV-----ADGEIVAIMGPS-----GAGKSTLLNLIAGFIEP---ASGSIKVNDQSHT 63 (213)
T ss_pred CeEEeeeEEeC--C--cceeeEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEcc
Confidence 36899999873 2 467889888 678888888777 89999999999999998 5899999999875
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+|||+|++.+++.+|+.||+.+....... ...+.+++++++++.+||.+..++.+.+ ||||
T Consensus 64 ~~~~~~~~i~~v~q~~~~~~~~t~~en~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 132 (213)
T TIGR01277 64 GLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLK---LNAEQQEKVVDAAQQVGIADYLDRLPEQ--------LSGG 132 (213)
T ss_pred cCChhccceEEEeccCccCCCCcHHHHHHhHhhccCC---ccHHHHHHHHHHHHHcCcHHHhhCCccc--------CCHH
Confidence 4 3567899999999999999999999876432211 1122345678899999998888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++|+++..|
T Consensus 133 ~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~-~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 133 QRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHL-SDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCeEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999999874589999999996 6788899999999999999887
Q ss_pred C
Q psy2519 256 S 256 (622)
Q Consensus 256 ~ 256 (622)
+
T Consensus 212 ~ 212 (213)
T TIGR01277 212 D 212 (213)
T ss_pred C
Confidence 5
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-40 Score=335.63 Aligned_cols=221 Identities=23% Similarity=0.312 Sum_probs=185.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|+ ...+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~ 71 (253)
T PRK14267 4 AIETVNLRVYY--GSNHVIKGVDLKI-----PQNGVFALMGPS-----GCGKSTLLRTFNRLLELNEEARVEGEVRLFGR 71 (253)
T ss_pred eEEEEeEEEEe--CCeeeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 46789999986 5667999999999 677788888777 899999999999999872 014899999999
Q ss_pred ecC--c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVE--G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~--~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++. . .+++.+||++|++.+++.+||.||+.++...+.. ..+.++..++++++++.+|+.+ ..++.+.+
T Consensus 72 ~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 149 (253)
T PRK14267 72 NIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGL-VKSKKELDERVEWALKKAALWDEVKDRLNDYPSN- 149 (253)
T ss_pred EccccccChHHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCc-cCCHHHHHHHHHHHHHHcCCccchhhhhccChhh-
Confidence 874 1 3567899999999999999999999987543211 0122334456788999999853 34555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 150 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~ 219 (253)
T PRK14267 150 -------LSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKK--EYTIVLVTHSP-AQAARVSDYVA 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhh--CCEEEEEECCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 220 ~l~~G~i~~~~~~~~~~ 236 (253)
T PRK14267 220 FLYLGKLIEVGPTRKVF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=329.79 Aligned_cols=217 Identities=23% Similarity=0.306 Sum_probs=189.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| +.+++++++|+++ ++|+.+.++|+| |||||||+++|+|..+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~il~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~g~~~~---~~G~i~~~g~~~~ 65 (232)
T cd03300 1 IELENVSKFY--GGFVALDGVSLDI-----KEGEFFTLLGPS-----GCGKTTLLRLIAGFETP---TSGEILLDGKDIT 65 (232)
T ss_pred CEEEeEEEEe--CCeeeeccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 3578999986 5567999999999 678888888777 89999999999999998 4899999999886
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.+||++|++.+++.+|+.||+.+....+. .......++++++++.+||.+..++.+.+ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------lS~G 134 (232)
T cd03300 66 NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKK---LPKAEIKERVAEALDLVQLEGYANRKPSQ--------LSGG 134 (232)
T ss_pred cCChhhcceEEEecccccCCCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchhhcCChhh--------CCHH
Confidence 4 246789999999999999999999988765432 12233455778999999999888888666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||+++|++ +++.+.||++++|++|++++.|
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 135 QQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQ-EEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-HHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999999874589999999996 6788999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+.+++.
T Consensus 214 ~~~~~~ 219 (232)
T cd03300 214 TPEEIY 219 (232)
T ss_pred CHHHHH
Confidence 887654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-40 Score=330.00 Aligned_cols=212 Identities=23% Similarity=0.317 Sum_probs=180.3
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..++ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~ 72 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVV-----KRGETIALIGES-----GSGKSTLLAILAGLDDG---SSGEVSLVGQ 72 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCeeEEECCE
Confidence 467899999974322 36999999999 678888888887 89999999999999998 5899999999
Q ss_pred ecCc---c----c-cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG---K----F-RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~---~----~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.. . . ++.+||++|++.+++.+||.||+.+....+. ....+.+++++++++.++|.+..++.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 146 (228)
T PRK10584 73 PLHQMDEEARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRG---ESSRQSRNGAKALLEQLGLGKRLDHLPAQ--- 146 (228)
T ss_pred EcccCCHHHHHHHHhheEEEEEcccccCCCcCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhh---
Confidence 8753 1 1 3579999999999999999999988654321 12334456788999999998888888666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +.+ +.+|++++|
T Consensus 147 -----LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~-~~~d~i~~l 219 (228)
T PRK10584 147 -----LSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDL-QLA-ARCDRRLRL 219 (228)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHH-HhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999874589999999996 466 559999999
Q ss_pred cCCceEEe
Q psy2519 247 ADSRTAFI 254 (622)
Q Consensus 247 ~~G~iv~~ 254 (622)
++|++++.
T Consensus 220 ~~g~i~~~ 227 (228)
T PRK10584 220 VNGQLQEE 227 (228)
T ss_pred ECCEEEec
Confidence 99998753
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=342.29 Aligned_cols=220 Identities=20% Similarity=0.280 Sum_probs=184.9
Q ss_pred CCcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+.++++||+++|.... .++++++|+++ .+|+.++++|+| |||||||+|+|+|+.+| .+|+|.++
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~ 71 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTF-----KKNKVTCVIGTT-----GSGKSTMIQLTNGLIIS---ETGQTIVG 71 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEEC
Confidence 5578999999973211 35999999999 677788888777 89999999999999998 58999999
Q ss_pred CEecCc---------cccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCc
Q psy2519 93 GKPVEG---------KFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTR 160 (622)
Q Consensus 93 G~~~~~---------~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~ 160 (622)
|+++.. .+++.+|||+|++. +++ .||+||+.+...... ...++..++++++++.++|. +..++.
T Consensus 72 g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~tv~enl~~~~~~~~---~~~~~~~~~~~~ll~~~~L~~~~~~~~ 147 (289)
T PRK13645 72 DYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-ETIEKDIAFGPVNLG---ENKQEAYKKVPELLKLVQLPEDYVKRS 147 (289)
T ss_pred CEEccccccccccHHHHhccEEEEEeCcchhhhh-hHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCChhHhcCC
Confidence 998631 34678999999863 444 599999998754321 12334456688899999994 677777
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+++ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.++|
T Consensus 148 ~~~--------LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~-~~~~~~~ 218 (289)
T PRK13645 148 PFE--------LSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNM-DQVLRIA 218 (289)
T ss_pred hhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhC
Confidence 666 9999999999999999999999999999999999999999999999874589999999996 6788999
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|++++|++|++++.|+++++.
T Consensus 219 d~i~~l~~G~i~~~g~~~~~~ 239 (289)
T PRK13645 219 DEVIVMHEGKVISIGSPFEIF 239 (289)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=326.82 Aligned_cols=202 Identities=25% Similarity=0.343 Sum_probs=174.3
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--- 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--- 98 (622)
||+|+| |+..+ ++|+++ .+ +.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 5 ~l~~~~--~~~~~--~vsl~i-----~~-e~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~~~ 66 (214)
T cd03297 5 DIEKRL--PDFTL--KIDFDL-----NE-EVTGIFGAS-----GAGKSTLLRCIAGLEKP---DGGTIVLNGTVLFDSRK 66 (214)
T ss_pred eeeEec--CCeee--CceEEE-----cc-eeEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEecccccc
Confidence 788886 66555 889888 56 788888777 89999999999999998 58999999998742
Q ss_pred -----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 99 -----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 -----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
..++.++|++|++.+++.+|++||+.+..... .....+++++++++.+|+.+..++.+.+ ||
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS 133 (214)
T cd03297 67 KINLPPQQRKIGLVFQQYALFPHLNVRENLAFGLKRK-----RNREDRISVDELLDLLGLDHLLNRYPAQ--------LS 133 (214)
T ss_pred hhhhhhHhhcEEEEecCCccCCCCCHHHHHHHHHhhC-----CHHHHHHHHHHHHHHcCCHhHhhcCccc--------CC
Confidence 24678999999999999999999998875322 1223345688999999998878887666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++||++|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|+++.
T Consensus 134 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDL-SEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCH-HHHHHhcCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999874589999999996 67888999999999999987
Q ss_pred ec
Q psy2519 254 IG 255 (622)
Q Consensus 254 ~G 255 (622)
.|
T Consensus 213 ~g 214 (214)
T cd03297 213 IG 214 (214)
T ss_pred cC
Confidence 65
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=330.83 Aligned_cols=217 Identities=27% Similarity=0.359 Sum_probs=189.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 i~i~~l~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~i~g~~~~ 65 (237)
T TIGR00968 1 IEIANISKRF--GSFQALDDVNLEV-----PTGSLVALLGPS-----GSGKSTLLRIIAGLEQP---DSGRIRLNGQDAT 65 (237)
T ss_pred CEEEEEEEEE--CCeeeeeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEcC
Confidence 3688999986 5668999999999 677788888777 89999999999999988 5899999999876
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+|+.||+.+....+. .......+.++++++.+++.+..++.+++ ||||
T Consensus 66 ~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------lS~G 134 (237)
T TIGR00968 66 RVHARDRKIGFVFQHYALFKHLTVRDNIAFGLEIRK---HPKAKIKARVEELLELVQLEGLGDRYPNQ--------LSGG 134 (237)
T ss_pred cCChhhcCEEEEecChhhccCCcHHHHHHhHHHhcC---CCHHHHHHHHHHHHHHcCCHhHhhCChhh--------CCHH
Confidence 4 346789999999999999999999998765432 12233446778999999998888888766 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.||++++|++|++++.|
T Consensus 135 ~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~-~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 135 QRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQ-EEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHhhcCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999874489999999996 6788999999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
+.+++.
T Consensus 214 ~~~~~~ 219 (237)
T TIGR00968 214 SPDEVY 219 (237)
T ss_pred CHHHHH
Confidence 988764
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=329.50 Aligned_cols=216 Identities=23% Similarity=0.289 Sum_probs=187.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++. +++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 1 l~~~~l~~~~--~~~-~l~~is~~i-----~~Ge~~~i~G~n-----G~GKStLl~~l~G~~~p---~~G~v~i~g~~~~ 64 (235)
T cd03299 1 LKVENLSKDW--KEF-KLKNVSLEV-----ERGDYFVILGPT-----GSGKSVLLETIAGFIKP---DSGKILLNGKDIT 64 (235)
T ss_pred CeeEeEEEEe--CCc-eeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCEEcC
Confidence 3578999986 443 799999999 677888888877 89999999999999998 5899999999876
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.++|++|++.+++.+|+.||+.+...... ....+..+++.++++.+||.+..++.+.+ ||||
T Consensus 65 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 133 (235)
T cd03299 65 NLPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRK---VDKKEIERKVLEIAEMLGIDHLLNRKPET--------LSGG 133 (235)
T ss_pred cCChhHcCEEEEeecCccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHHhcCccc--------CCHH
Confidence 4 246789999999999999999999988754321 12344455678899999998888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||++ .++.++||++++|++|+++..|
T Consensus 134 ~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~-~~~~~~~d~i~~l~~G~i~~~~ 212 (235)
T cd03299 134 EQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDF-EEAWALADKVAIMLNGKLIQVG 212 (235)
T ss_pred HHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999999874599999999996 6788899999999999999999
Q ss_pred ChHHHH
Q psy2519 256 SKDAAL 261 (622)
Q Consensus 256 ~~~~~~ 261 (622)
++++..
T Consensus 213 ~~~~~~ 218 (235)
T cd03299 213 KPEEVF 218 (235)
T ss_pred CHHHHH
Confidence 987654
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-40 Score=334.13 Aligned_cols=219 Identities=19% Similarity=0.301 Sum_probs=181.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.. |....+|+|.++|+
T Consensus 6 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14242 6 KMEARGLSFFY--GDFQALHDISLEF-----EQNQVTALIGPS-----GCGKSTFLRCLNRMNDLIPGARVEGEILLDGE 73 (253)
T ss_pred EEEEeeeEEEE--CCeeeecceeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHHhhcccCCCCCCceEEEECCE
Confidence 35688999986 5667999999999 677788888887 8999999999999864 10014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ .||+||+.+....+.. ...++..++++++++.+|+.+ ..++.+++
T Consensus 74 ~i~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 149 (253)
T PRK14242 74 NIYDPHVDVVELRRRVGMVFQKPNPFP-KSIFENVAYGLRVNGV--KDKAYLAERVERSLRHAALWDEVKDRLHESALG- 149 (253)
T ss_pred EccccccCHHHHhhcEEEEecCCCCCc-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCchhhhHHhhCCccc-
Confidence 8742 24678999999988888 5999999987543321 122334567888999999854 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ |+|||++||++ +++.++||+++
T Consensus 150 -------LSgGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tvii~tH~~-~~~~~~~d~v~ 219 (253)
T PRK14242 150 -------LSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA--RYTIIIVTHNM-QQAARVSDVTA 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCeEEEEEecH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14242 220 FFYMGKLIEVGPTEQIF 236 (253)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988653
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=337.85 Aligned_cols=224 Identities=21% Similarity=0.270 Sum_probs=186.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-----ceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-----IIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-----~~~G~I~~ 91 (622)
+++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++|.. ..+|+|.+
T Consensus 1 ml~~~nl~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~ 68 (272)
T PRK13547 1 MLTADHLHVAR--RHRAILRDLSLRI-----EPGRVTALLGRN-----GAGKSTLLKALAGDLTGGGAPRGARVTGDVTL 68 (272)
T ss_pred CeEEEEEEEEE--CCEeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCcccccccCCceEEEE
Confidence 36789999986 6678999999999 677788888777 8999999999999998730 12899999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+|+++.. ..++.++|++|++.+++.+||+||+.+....... ......+..++++++++.+||.+..++.+.+
T Consensus 69 ~g~~~~~~~~~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--- 145 (272)
T PRK13547 69 NGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTT--- 145 (272)
T ss_pred CCEEcccCCHHHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCccc---
Confidence 9998753 3466789999998766679999999885321110 0111123345688999999998888887766
Q ss_pred CCccccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 167 TQKVVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
|||||||||+|||+|+ .+|++|||||||+|||+.++..+.+.|++++++.|+|||++||++ +++.
T Consensus 146 -----LSgG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~-~~~~ 219 (272)
T PRK13547 146 -----LSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDP-NLAA 219 (272)
T ss_pred -----CCHHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCH-HHHH
Confidence 9999999999999999 599999999999999999999999999999874489999999996 6788
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||++++|++|++++.|+++++.
T Consensus 220 ~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 220 RHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred HhCCEEEEEECCeEEEecCHHHHc
Confidence 899999999999999999988663
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=331.50 Aligned_cols=221 Identities=20% Similarity=0.286 Sum_probs=184.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
+.++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 3 ~~l~~~nl~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g 70 (252)
T PRK14256 3 NKVKLEQLNVHF--GKNHAVKDVSMDF-----PENSVTAIIGPS-----GCGKSTVLRSINRMHDLVPSARVTGKILLDD 70 (252)
T ss_pred cEEEEEEEEEEe--CCeeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcccCCCCCCCceEEEECC
Confidence 457899999997 5667999999999 677888888777 8999999999999986 3111489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. .+++.++|++|++.+++.+||.||+.+...... .....+..++++++++.+++.+ ..++.+++
T Consensus 71 ~~i~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 148 (252)
T PRK14256 71 TDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNG--RVNRSEADEIVESSLKRVALWDEVKDRLKSNAME 148 (252)
T ss_pred EEcccccCChHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCc
Confidence 98742 357789999999999999999999987654321 1122333456789999999854 33455444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++
T Consensus 149 --------LS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~~~~~~d~i 217 (252)
T PRK14256 149 --------LSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKE--KYTIIIVTHNM-QQAARVSDYT 217 (252)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh--CCcEEEEECCH-HHHHhhCCEE
Confidence 999999999999999999999999999999999999999999999975 58999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14256 218 AFFYMGDLVECGETKKIF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=332.87 Aligned_cols=220 Identities=20% Similarity=0.286 Sum_probs=184.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 4 ~l~i~~v~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~ 71 (258)
T PRK14241 4 RIDVKDLNIYY--GSFHAVEDVNLNI-----EPRSVTAFIGPS-----GCGKSTVLRTLNRMHEVIPGARVEGEVLLDGE 71 (258)
T ss_pred cEEEeeEEEEE--CCEeeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCcccCCCcceEEEECCE
Confidence 57899999997 5567999999999 677788888777 8999999999999987421 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++.+||+||+.+....+.. .+..+.+++++++++.+||. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 148 (258)
T PRK14241 72 DLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGV--RNKKDLDELVEKSLRGANLWNEVKDRLDKPGGG- 148 (258)
T ss_pred eccccccChHHHhcceEEEccccccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhHhhCCccc-
Confidence 8731 3567899999999999999999999987643321 12334456788999999984 345566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.||+++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tviivsH~~-~~~~~~~d~i~ 218 (258)
T PRK14241 149 -------LSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQ--DYTIVIVTHNM-QQAARVSDQTA 218 (258)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eec------CCceEEecChHHHH
Q psy2519 245 LLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~------~G~iv~~G~~~~~~ 261 (622)
+|+ +|++++.|+++++.
T Consensus 219 ~l~~~~~~~~g~i~~~~~~~~~~ 241 (258)
T PRK14241 219 FFNLEATGKPGRLVEIDDTEKIF 241 (258)
T ss_pred EEecccCCCCceEEecCCHHHHH
Confidence 997 79999999988764
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=330.19 Aligned_cols=220 Identities=22% Similarity=0.315 Sum_probs=182.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|....+|+|.++|+++
T Consensus 2 ~~~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i 69 (246)
T PRK14269 2 IAKTTNLNLFY--GKKQALFDINMQI-----EQNKITALIGAS-----GCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDV 69 (246)
T ss_pred ceeeeeeEEEE--CCEeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCCCCCCceEEEECCEec
Confidence 35789999987 5678999999999 677788888776 89999999999999752111589999999988
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCCCC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~~~ 168 (622)
.. ..++.+||++|++.+++ .||+||+.++...+... ....+.+++++++++.++|.+ ..++.+.+
T Consensus 70 ~~~~~~~~~~~i~~~~q~~~l~~-~tv~eni~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~----- 142 (246)
T PRK14269 70 KNQDVVALRKNVGMVFQQPNVFV-KSIYENISYAPKLHGMI-KNKDEEEALVVDCLQKVGLFEEVKDKLKQNALA----- 142 (246)
T ss_pred ccCCHHHHhhhEEEEecCCcccc-ccHHHHhhhHHhhcCcc-cChHHHHHHHHHHHHHcCCChhhhHHhcCCccc-----
Confidence 54 35778999999998887 69999999875443210 012334456789999999953 34555444
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |+|+|++||++ +++.+.+|++++|++
T Consensus 143 ---LS~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~i~~l~~ 216 (246)
T PRK14269 143 ---LSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSH--NLSMIMVTHNM-QQGKRVADYTAFFHL 216 (246)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-HHHHhhCcEEEEEEC
Confidence 999999999999999999999999999999999999999999999963 79999999996 678889999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 217 G~i~~~g~~~~~~ 229 (246)
T PRK14269 217 GELIEFGESKEFF 229 (246)
T ss_pred CEEEEECCHHHHH
Confidence 9999999988764
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=332.70 Aligned_cols=220 Identities=20% Similarity=0.322 Sum_probs=183.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 11 ~~l~i~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g 78 (259)
T PRK14274 11 EVYQINGMNLWY--GQHHALKNINLSI-----PENEVTAIIGPS-----GCGKSTFIKTLNLMIQMVPNVKLTGEMNYNG 78 (259)
T ss_pred ceEEEeeEEEEE--CCeeeEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhccCCCCCCCceEEEECC
Confidence 357899999986 5678999999999 677788888777 8999999999999987 3211489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++. ||+||+.+....... ..+++..++++++++.+++.+ ..++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~ 155 (259)
T PRK14274 79 SNILKGKVDLVELRKNIGMVFQKGNPFPQ-SIFDNVAYGPRIHGT--KNKKKLQEIVEKSLKDVALWDEVKDRLHTQALS 155 (259)
T ss_pred EEccccccCHHHHhhceEEEecCCccccc-CHHHHHHhHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhhhhhhCCccc
Confidence 98742 346789999999888885 999999987543321 122344556788999999853 34555555
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|+|++||++ +++.+.|||+
T Consensus 156 --------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~i 224 (259)
T PRK14274 156 --------LSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKE--KYTIVIVTHNM-QQAARVSDQT 224 (259)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 6888999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 225 ~~l~~G~i~~~g~~~~~~ 242 (259)
T PRK14274 225 AFFYMGELVECNDTNKMF 242 (259)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998764
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=366.87 Aligned_cols=221 Identities=20% Similarity=0.253 Sum_probs=190.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+|+ ..+|+|.++|+++
T Consensus 5 ~l~~~nl~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~-~~~G~i~~~g~~~ 71 (506)
T PRK13549 5 LLEMKNITKTF--GGVKALDNVSLKV-----RAGEIVSLCGEN-----GAGKSTLMKVLSGVYPHG-TYEGEIIFEGEEL 71 (506)
T ss_pred eEEEeeeEEEe--CCeEeecceeEEE-----eCCeEEEEECCC-----CCCHHHHHHHHhCCCCCC-CCCeEEEECCEEC
Confidence 57899999986 6678999999999 677788888887 899999999999999862 1489999999988
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. ..++.+|||+|++.+++.+||+||+.++...+.....+.++..++++++++.+||.+..++.+++
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 143 (506)
T PRK13549 72 QASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGN-------- 143 (506)
T ss_pred CCCCHHHHHHCCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhh--------
Confidence 53 13577999999999999999999999875432101112334456788999999998888888777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|++
T Consensus 144 LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvi~~tH~~-~~~~~~~d~v~~l~~G~i 221 (506)
T PRK13549 144 LGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKA-HGIACIYISHKL-NEVKAISDTICVIRDGRH 221 (506)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhcCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 688889999999999999
Q ss_pred EEecChHHH
Q psy2519 252 AFIGSKDAA 260 (622)
Q Consensus 252 v~~G~~~~~ 260 (622)
++.|+++++
T Consensus 222 ~~~~~~~~~ 230 (506)
T PRK13549 222 IGTRPAAGM 230 (506)
T ss_pred eeecccccC
Confidence 999988764
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=332.90 Aligned_cols=220 Identities=23% Similarity=0.330 Sum_probs=183.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
..++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 12 ~~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g 79 (260)
T PRK10744 12 SKIQVRNLNFYY--GKFHALKNINLDI-----AKNQVTAFIGPS-----GCGKSTLLRTFNRMYELYPEQRAEGEILLDG 79 (260)
T ss_pred ceEEEEEEEEEe--CCeEEeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCcceEEEECC
Confidence 346789999987 5667999999999 677888888777 8999999999999986 2111489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~ 163 (622)
+++.. .+++.++|++|++.+++ .||+||+.+...... ..+..+..++++++++.+++. +..++.+++
T Consensus 80 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 156 (260)
T PRK10744 80 ENILTPKQDIALLRAKVGMVFQKPTPFP-MSIYDNIAFGVRLFE--KLSRAEMDERVEWALTKAALWNEVKDKLHQSGYS 156 (260)
T ss_pred EEccccccchHHHhcceEEEecCCccCc-CcHHHHHhhhHhhcC--CCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCC
Confidence 98742 35678999999988887 899999988754321 123334456788999999984 345666555
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+++|++
T Consensus 157 --------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~-~~~~~~~d~i 225 (260)
T PRK10744 157 --------LSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQ--DYTVVIVTHNM-QQAARCSDYT 225 (260)
T ss_pred --------CCHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999953 68999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 226 ~~l~~G~i~~~g~~~~~~ 243 (260)
T PRK10744 226 AFMYLGELIEFGNTDTIF 243 (260)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=352.82 Aligned_cols=227 Identities=21% Similarity=0.290 Sum_probs=198.2
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G 93 (622)
.++|+||+++|...+ ++++++||+++ .+|+.+.|+|.+ ||||||+.++|.|+++++ ...+|+|.++|
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v-----~~GE~lgIvGES-----GsGKSt~a~~i~gll~~~~~~~~G~I~~~g 74 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEV-----EPGEILGIVGES-----GSGKSTLALALMGLLPEGGRITSGEVILDG 74 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEe-----cCCcEEEEEcCC-----CCCHHHHHHHHhccCCCCCcccceEEEECC
Confidence 678999999985332 47999999999 678888888764 899999999999999986 34689999999
Q ss_pred EecCc--------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC
Q psy2519 94 KPVEG--------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~--------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 163 (622)
+++.. ...+.|+||||++ .+.|-+||.+.+.-....+.. .+.++.++++.++++++||.+.... +
T Consensus 75 ~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~--~~~~ea~~~a~elL~~Vgl~~~~~~---~ 149 (539)
T COG1123 75 RDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGK--GSRAEARKRAVELLEQVGLPDPERR---D 149 (539)
T ss_pred cchhcCCHHHHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHHcCCCChhhh---c
Confidence 97643 1458899999996 588889999999887766642 2367788899999999999887655 3
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.+|++ |||||||||.||+||+.+|++|++||||++||+.++.+|+++|+++.++.|+++|++|||+ ..+.++||||
T Consensus 150 ~yPhe---LSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl-~Vva~~aDrv 225 (539)
T COG1123 150 RYPHQ---LSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVAELADRV 225 (539)
T ss_pred cCCcc---cCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCH-HHHHHhcCeE
Confidence 34777 9999999999999999999999999999999999999999999999988999999999997 7899999999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|.+|++++.|+++++++
T Consensus 226 ~Vm~~G~iVE~G~~~~i~~ 244 (539)
T COG1123 226 VVMYKGEIVETGPTEEILS 244 (539)
T ss_pred EEEECCEEEEecCHHHHHh
Confidence 9999999999999998874
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=333.25 Aligned_cols=220 Identities=19% Similarity=0.305 Sum_probs=184.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|. ...+|+|.++|+
T Consensus 19 ~l~~~nl~~~~--~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~ 86 (267)
T PRK14235 19 KMRARDVSVFY--GEKQALFDVDLDI-----PEKTVTAFIGPS-----GCGKSTFLRCLNRMNDTIDGCRVTGKITLDGE 86 (267)
T ss_pred eEEEEeEEEEE--CCEEEEEEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 67899999997 5678999999999 678888888777 899999999999998741 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.+||++|++.+++. ||.||+.+....+.. .....+..++++++++.+||.+ ..++.+++
T Consensus 87 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 163 (267)
T PRK14235 87 DIYDPRLDVVELRARVGMVFQKPNPFPK-SIYENVAYGPRIHGL-ARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTG- 163 (267)
T ss_pred ECcccccchHHHhhceEEEecCCCCCCC-cHHHHHHHHHHhccc-ccchHHHHHHHHHHHHHcCCchhhhHHhhCCccc-
Confidence 8742 256789999999888875 999999987644321 0122334567889999999964 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +.+.++||+++
T Consensus 164 -------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~--~~tiiivtH~~-~~~~~~~d~v~ 233 (267)
T PRK14235 164 -------LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQ--NYTIVIVTHSM-QQAARVSQRTA 233 (267)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhc--CCeEEEEEcCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 234 ~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14235 234 FFHLGNLVEVGDTEKMF 250 (267)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=353.19 Aligned_cols=222 Identities=22% Similarity=0.288 Sum_probs=193.7
Q ss_pred CCcccCCccccccc---------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 16 NNEEVPNVDFSEIV---------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 16 ~~~~~~~~~~~~~~---------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
..++++||++.|.. |.+.++++|||.+ .+|+.+.++|. ||||||||.|+|+|+.+| .+
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l-----~~GE~lglVGe-----SGsGKSTlar~i~gL~~P---~~ 345 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDL-----REGETLGLVGE-----SGSGKSTLARILAGLLPP---SS 345 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEe-----cCCCEEEEECC-----CCCCHHHHHHHHhCCCCC---CC
Confidence 45679999999973 3478899999999 67777777766 489999999999999999 48
Q ss_pred eEEEECCEecC--c----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-cc
Q psy2519 87 GDIRVNGKPVE--G----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQ 157 (622)
Q Consensus 87 G~I~~~G~~~~--~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~ 157 (622)
|+|.++|.+.. . ..|+.+-+|||++ .|.|.+||.+++.-....+... ...+++++++++++.+||.. ..
T Consensus 346 G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~--~~~~~~~rv~~ll~~VgL~~~~l 423 (539)
T COG1123 346 GSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG--SGAERRARVAELLELVGLPPEFL 423 (539)
T ss_pred ceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc--chHHHHHHHHHHHHHcCCCHHHH
Confidence 99999998732 1 3567888999986 6999999999999987765432 24566778999999999975 57
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
+++ |++ ||||||||++|||||+.+|++|++|||||.||+..+.++.++|+++.++.|.|.|++|||+ +.+.
T Consensus 424 ~ry-----P~e---lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl-~vV~ 494 (539)
T COG1123 424 DRY-----PHE---LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDL-AVVR 494 (539)
T ss_pred hcC-----chh---cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCH-HHHH
Confidence 777 455 9999999999999999999999999999999999999999999999998899999999996 7999
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||++|.+|++|..|+.++++
T Consensus 495 ~i~drv~vm~~G~iVE~G~~~~v~ 518 (539)
T COG1123 495 YIADRVAVMYDGRIVEEGPTEKVF 518 (539)
T ss_pred hhCceEEEEECCeEEEeCCHHHHh
Confidence 999999999999999999888776
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=331.55 Aligned_cols=219 Identities=18% Similarity=0.192 Sum_probs=184.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP- 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~- 95 (622)
.++++||++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~l~~~~l~~~~--~~~~il~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 70 (258)
T PRK11701 6 LLSVRGLTKLY--GPRKGCRDVSFDL-----YPGEVLGIVGES-----GSGKTTLLNALSARLAP---DAGEVHYRMRDG 70 (258)
T ss_pred eEEEeeeEEEc--CCceeeeeeeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCccc
Confidence 57899999987 5567999999999 678888888887 89999999999999998 58999999998
Q ss_pred ----cCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCc
Q psy2519 96 ----VEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTR 160 (622)
Q Consensus 96 ----~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~ 160 (622)
+.. . .++.+|||+|++ .+++.+|+.||+.+....... ....+..++++++++.+++.+ ..++.
T Consensus 71 ~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (258)
T PRK11701 71 QLRDLYALSEAERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA--RHYGDIRATAGDWLERVEIDAARIDDL 148 (258)
T ss_pred cccccccCCHHHHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhcc--CcHHHHHHHHHHHHHHcCCChhHHhCC
Confidence 542 1 245799999996 477889999999775322110 112234556889999999974 66777
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+.+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +.+.+.|
T Consensus 149 ~~~--------LS~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~-~~~~~~~ 219 (258)
T PRK11701 149 PTT--------FSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-AVARLLA 219 (258)
T ss_pred Ccc--------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCH-HHHHHhc
Confidence 666 9999999999999999999999999999999999999999999999875589999999996 6788899
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|++++|++|++++.|+++++.
T Consensus 220 d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 220 HRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred CEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999988764
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-40 Score=364.95 Aligned_cols=219 Identities=21% Similarity=0.255 Sum_probs=189.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 4 ~i~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~ 68 (501)
T PRK10762 4 LLQLKGIDKAF--PGVKALSGAALNV-----YPGRVMALVGEN-----GAGKSTMMKVLTGIYTR---DAGSILYLGKEV 68 (501)
T ss_pred eEEEeeeEEEe--CCeEEeeeeeEEE-----cCCeEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 57899999987 5678999999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. . .++.+|||+|++.+++.+||+||+.++...... ...+..+.+++++++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------- 141 (501)
T PRK10762 69 TFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE------- 141 (501)
T ss_pred CCCCHHHHHhCCEEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhh-------
Confidence 53 1 356799999999999999999999986433210 1112233456788999999999888888777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++|||+ +++.++||++++|++|+
T Consensus 142 -LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tvii~sHd~-~~~~~~~d~i~~l~~G~ 218 (501)
T PRK10762 142 -LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKS-QGRGIVYISHRL-KEIFEICDDVTVFRDGQ 218 (501)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999986 699999999996 68889999999999999
Q ss_pred eEEecChHHH
Q psy2519 251 TAFIGSKDAA 260 (622)
Q Consensus 251 iv~~G~~~~~ 260 (622)
++..|+++++
T Consensus 219 i~~~~~~~~~ 228 (501)
T PRK10762 219 FIAEREVADL 228 (501)
T ss_pred EEEecCcCcC
Confidence 9999987754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=329.72 Aligned_cols=218 Identities=19% Similarity=0.307 Sum_probs=181.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC---CCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV---IDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~---~~~~~~~G~I~~~G 93 (622)
+++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +|. ..+|+|.++|
T Consensus 3 ~l~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~-~~~G~i~~~g 69 (250)
T PRK14245 3 KIDARDVNFWY--GDFHALKGISMEI-----EEKSVVAFIGPS-----GCGKSTFLRLFNRMNDLIPAT-RLEGEIRIDG 69 (250)
T ss_pred EEEEEEEEEEE--CCEeEEeeeeEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhhhhcccCCC-CCceEEEECC
Confidence 46789999986 6678999999999 677888888777 899999999999973 331 1389999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.++|++|++.+++ .|+.||+.+....+.. .......+.++++++.+||.+ ..++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~ 146 (250)
T PRK14245 70 RNIYDKGVQVDELRKNVGMVFQRPNPFP-KSIFENVAYGLRVNGV--KDNAFIRQRVEETLKGAALWDEVKDKLKESAFA 146 (250)
T ss_pred EecccccccHHHHhhheEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCcchhhhhhCCccc
Confidence 98743 24678999999988887 5999999887544321 112234456789999999864 34555444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ .++|||++||++ +++.++|||+
T Consensus 147 --------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiivtH~~-~~~~~~~d~v 215 (250)
T PRK14245 147 --------LSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELK--KDYTIVIVTHNM-QQAARVSDKT 215 (250)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCH-HHHHhhCCEE
Confidence 99999999999999999999999999999999999999999999995 379999999996 6788999999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 216 ~~l~~G~~~~~~~~~~~~ 233 (250)
T PRK14245 216 AFFYMGEMVEYDDTKKIF 233 (250)
T ss_pred EEEECCEEEEECCHHHHh
Confidence 999999999999998774
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=330.14 Aligned_cols=218 Identities=20% Similarity=0.245 Sum_probs=183.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~G~~ 95 (622)
.++++||+++| + .++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|++
T Consensus 4 ~l~~~~l~~~~--~-~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~ 70 (254)
T PRK10418 4 QIELRNIALQA--A-QPLVHGVSLTL-----QRGRVLALVGGS-----GSGKSLTCAAALGILPAGVRQTAGRVLLDGKP 70 (254)
T ss_pred EEEEeCeEEEe--c-cceecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCCCCcCCEEEECCee
Confidence 56889999997 3 57999999999 678888888887 8999999999999998721 138999999998
Q ss_pred cCc-c-ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCCccCCcCCCC
Q psy2519 96 VEG-K-FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~-~-~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~~v~~~~~~~ 168 (622)
+.. . .++.++||+|++. +.+.+|+.+++.+.+..... .. ..+++.++++.++|.+ ..++.+++
T Consensus 71 i~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~----- 140 (254)
T PRK10418 71 VAPCALRGRKIATIMQNPRSAFNPLHTMHTHARETCLALGK---PA--DDATLTAALEAVGLENAARVLKLYPFE----- 140 (254)
T ss_pred ccccccccceEEEEecCCccccCccccHHHHHHHHHHHcCC---Ch--HHHHHHHHHHHcCCCChhhhhhcCCcc-----
Confidence 854 2 3467999999974 55778999998775433211 11 2256789999999976 45666666
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.++||++++|++
T Consensus 141 ---LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~-~~~~~~~d~v~~l~~ 216 (254)
T PRK10418 141 ---MSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDM-GVVARLADDVAVMSH 216 (254)
T ss_pred ---cCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999875589999999996 678889999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 217 G~i~~~~~~~~~~ 229 (254)
T PRK10418 217 GRIVEQGDVETLF 229 (254)
T ss_pred CEEEEecCHHHHh
Confidence 9999999988764
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=363.13 Aligned_cols=213 Identities=21% Similarity=0.296 Sum_probs=187.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 75 (510)
T PRK15439 11 LLCARSISKQY--SGVEVLKGIDFTL-----HAGEVHALLGGN-----GAGKSTLMKIIAGIVPP---DSGTLEIGGNPC 75 (510)
T ss_pred eEEEEeEEEEe--CCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 57899999986 6677999999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. . .++.+|||+|++.+++.+||+||+.+.... ..+.+++++++++.+||.+..++.+++
T Consensus 76 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 140 (510)
T PRK15439 76 ARLTPAKAHQLGIYLVPQEPLLFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLDLDSSAGS-------- 140 (510)
T ss_pred CCCCHHHHHhCCEEEEeccCccCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCccccCChhh--------
Confidence 53 1 235799999999999999999999886321 123345688999999999888888777
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++
T Consensus 141 LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~i~~l~~G~i 218 (510)
T PRK15439 141 LEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLA-QGVGIVFISHKL-PEIRQLADRISVMRDGTI 218 (510)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 219 ~~~g~~~~~~ 228 (510)
T PRK15439 219 ALSGKTADLS 228 (510)
T ss_pred EEecChHHcC
Confidence 9999988653
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=328.41 Aligned_cols=220 Identities=21% Similarity=0.272 Sum_probs=183.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+|+|+|+++|.. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 71 (252)
T PRK14272 4 LLSAQDVNIYY--GDKQAVKNVNLDV-----QRGTVNALIGPS-----GCGKTTFLRAINRMHDLTPGARVTGRILLDGQ 71 (252)
T ss_pred EEEEeeeEEEE--CCEEeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCCCcCCCCceeEEECCE
Confidence 57899999987 5678999999999 677788888777 8999999999999987631 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++.+|+.||+.+....... ..+++..++++++++.+++. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 148 (252)
T PRK14272 72 DIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGI--RDRDHLMEVAERSLRGAALWDEVKDRLKTPATG- 148 (252)
T ss_pred EcccCccCHHHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCcchhhhhhhcCCccc-
Confidence 8742 3467899999999999999999999876543211 12233345667777877763 344666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.|||++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~i~ 218 (252)
T PRK14272 149 -------LSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK--VTTIIIVTHNM-HQAARVSDTTS 218 (252)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 69999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14272 219 FFLVGDLVEHGPTDQLF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=328.50 Aligned_cols=221 Identities=20% Similarity=0.272 Sum_probs=184.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~ 92 (622)
+-+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++
T Consensus 2 ~~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~~~~~~~~G~i~~~ 69 (251)
T PRK14270 2 KIKMESKNLNLWY--GEKQALNDINLPI-----YENKITALIGPS-----GCGKSTFLRCLNRMNDLISNVKIEGEVLLD 69 (251)
T ss_pred ccEEEEEEeEEEE--CCeeeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCcccCCCCccEEEEC
Confidence 3467899999986 5677999999999 677888888777 899999999999998741 1148999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+||++|++.+++ +|++||+.+....... ....+..++++++++.++|. +..++.++
T Consensus 70 g~~i~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 146 (251)
T PRK14270 70 GKNIYDKDVDVVELRKRVGMVFQKPNPFP-MSIYDNVAYGPRIHGI--KDKKELDKIVEWALKKAALWDEVKDDLKKSAL 146 (251)
T ss_pred CEecccccccHHHHHhheEEEecCCCcCC-CcHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcc
Confidence 998742 24678999999998887 8999999987544321 12233455678899999884 33455555
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||
T Consensus 147 ~--------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~d~ 215 (251)
T PRK14270 147 K--------LSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKK--EYTIVIVTHNM-QQASRVSDY 215 (251)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEEcCH-HHHHHhcCE
Confidence 4 999999999999999999999999999999999999999999999975 48999999996 688899999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+++++.
T Consensus 216 v~~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14270 216 TAFFLMGDLIEFNKTEKIF 234 (251)
T ss_pred EEEEECCeEEEeCCHHHHh
Confidence 9999999999999998764
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=329.88 Aligned_cols=218 Identities=22% Similarity=0.309 Sum_probs=173.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~~ 67 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRI-----KPGEVVGIVGRS-----GSGKSTLTKLIQRFYVP---ENGRVLVDGHDLA 67 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCeehH
Confidence 3578999997444567999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.+||++|++.+++ .||.||+.+....................++++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~-------- 138 (237)
T cd03252 68 LADPAWLRRQVGVVLQENVLFN-RSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAG-------- 138 (237)
T ss_pred hcCHHHHhhcEEEEcCCchhcc-chHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCc--------
Confidence 3 35678999999987775 69999998753211000000000111234555555 555555566555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +++ +.||++++|++|++
T Consensus 139 LSgG~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~sH~~-~~~-~~~d~v~~l~~G~i 214 (237)
T cd03252 139 LSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDIC--AGRTVIIIAHRL-STV-KNADRIIVMEKGRI 214 (237)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHH-HhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999996 389999999997 466 46999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
++.|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (237)
T cd03252 215 VEQGSHDELL 224 (237)
T ss_pred EEEcCHHHHH
Confidence 9999988764
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=363.31 Aligned_cols=219 Identities=21% Similarity=0.267 Sum_probs=189.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 5 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i 69 (510)
T PRK09700 5 YISMAGIGKSF--GPVHALKSVNLTV-----YPGEIHALLGEN-----GAGKSTLMKVLSGIHEP---TKGTITINNINY 69 (510)
T ss_pred eEEEeeeEEEc--CCeEEeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCcCC---CccEEEECCEEC
Confidence 57899999986 6678999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcC----CCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
.. . .++.+|||+|++.+++.+||+||+.++.... .....+..+..++++++++.+||.+..++.+++
T Consensus 70 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 145 (510)
T PRK09700 70 NKLDHKLAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVAN---- 145 (510)
T ss_pred CCCCHHHHHHCCeEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhh----
Confidence 54 1 3467999999999999999999998754211 100012234456788999999999888888777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||++++|+
T Consensus 146 ----LSgG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tiiivsHd~-~~~~~~~d~v~~l~ 219 (510)
T PRK09700 146 ----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK-EGTAIVYISHKL-AEIRRICDRYTVMK 219 (510)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999999
Q ss_pred CCceEEecChHHH
Q psy2519 248 DSRTAFIGSKDAA 260 (622)
Q Consensus 248 ~G~iv~~G~~~~~ 260 (622)
+|++++.|+++++
T Consensus 220 ~G~i~~~g~~~~~ 232 (510)
T PRK09700 220 DGSSVCSGMVSDV 232 (510)
T ss_pred CCEEeeecchhhC
Confidence 9999999998764
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-39 Score=326.89 Aligned_cols=219 Identities=21% Similarity=0.313 Sum_probs=182.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC--CCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID--DCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~--~~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++ ....+|+|.++|+
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~ 70 (250)
T PRK14240 3 KISVKDLDLFY--GDFQALKKINLDI-----EENQVTALIGPS-----GCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQ 70 (250)
T ss_pred eEEEEEEEEEE--CCceeeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 46789999987 5567999999999 677788888777 89999999999998763 2114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++ +|+.||+.+....... .+.++..++++++++.+++. +..++.+++
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~t~~~ni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 146 (250)
T PRK14240 71 DIYKSDIDVNQLRKRVGMVFQQPNPFP-MSIYDNVAYGPRTHGI--KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALG- 146 (250)
T ss_pred EccccccchHHHhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCC-
Confidence 8752 25778999999988887 8999999987543321 12233456678889999874 334566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+.+|+++
T Consensus 147 -------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sH~~-~~~~~~~d~v~ 216 (250)
T PRK14240 147 -------LSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK--DYTIVIVTHNM-QQASRISDKTA 216 (250)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEEeCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~~~~~~~~ 233 (250)
T PRK14240 217 FFLNGEIVEFGDTVDLF 233 (250)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=327.44 Aligned_cols=219 Identities=21% Similarity=0.249 Sum_probs=181.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 5 ~l~~~~l~~~~--~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~ 72 (252)
T PRK14239 5 ILQVSDLSVYY--NKKKALNSVSLDF-----YPNEITALIGPS-----GSGKSTLLRSINRMNDLNPEVTITGSIVYNGH 72 (252)
T ss_pred eEEEEeeEEEE--CCeeeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccccCCCCCccceEEECCE
Confidence 47899999987 5667999999999 677788888777 8999999999999853 52113899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.+|||+|++.+++ +||+||+.+....... .......++++++++.+++.+ ..++.+++
T Consensus 73 ~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 148 (252)
T PRK14239 73 NIYSPRTDTVDLRKEIGMVFQQPNPFP-MSIYENVVYGLRLKGI--KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALG- 148 (252)
T ss_pred ECcCcccchHhhhhcEEEEecCCccCc-CcHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCchhHHHHHhcCccc-
Confidence 8742 24678999999988887 8999999987543311 112233456788899998743 34555555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.|||++
T Consensus 149 -------LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sH~~-~~~~~~~d~i~ 218 (252)
T PRK14239 149 -------LSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKD--DYTMLLVTRSM-QQASRISDRTG 218 (252)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhh--CCeEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 219 ~l~~G~i~~~g~~~~~~ 235 (252)
T PRK14239 219 FFLDGDLIEYNDTKQMF 235 (252)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-39 Score=327.34 Aligned_cols=218 Identities=21% Similarity=0.347 Sum_probs=180.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCEec
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGKPV 96 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~~~ 96 (622)
+++||++.| ++.++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+ |....+|+|.++|+++
T Consensus 7 ~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i 74 (251)
T PRK14244 7 SVKNLNLWY--GSKQILFDINLDI-----YKREVTAFIGPS-----GCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDV 74 (251)
T ss_pred EeeeEEEEE--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccCCCCCcceEEEECCEeh
Confidence 578999986 5678999999999 677788888777 8999999999999986 2111489999999987
Q ss_pred Cc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcCC
Q psy2519 97 EG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSSI 166 (622)
Q Consensus 97 ~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~~ 166 (622)
.. ..++.+||++|++.+++. ||.||+.+....+.. .....+..+.+.++++.+||.+ ..++.+++
T Consensus 75 ~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~~ni~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~--- 149 (251)
T PRK14244 75 YSVDTNVVLLRAKVGMVFQKPNPFPK-SIYDNVAYGPKLHGL-AKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFE--- 149 (251)
T ss_pred HhcccchHHHhhhEEEEecCcccccC-CHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhh---
Confidence 42 257789999999888886 999999987543321 1122334456788999999965 23455444
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +++.+.||++++|
T Consensus 150 -----LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~--~~~tiiiisH~~-~~~~~~~d~i~~l 221 (251)
T PRK14244 150 -----LSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELK--KNFTIIVVTHSM-KQAKKVSDRVAFF 221 (251)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCeEEEEeCCH-HHHHhhcCEEEEE
Confidence 99999999999999999999999999999999999999999999995 379999999996 6788899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~~~~~~~~ 236 (251)
T PRK14244 222 QSGRIVEYNTTQEIF 236 (251)
T ss_pred ECCEEEEeCCHHHHh
Confidence 999999999988664
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=326.75 Aligned_cols=219 Identities=20% Similarity=0.304 Sum_probs=182.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+|. ...+|+|.++|.
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~ 70 (250)
T PRK14262 3 IIEIENFSAYY--GEKKAVKNVTMKI-----FKNQITAIIGPS-----GCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQ 70 (250)
T ss_pred eEEEEeeEEEe--CCceeEeeeeEee-----cCCCEEEEECCC-----CCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 46899999986 5678999999999 677788888887 899999999999998741 114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++ .||+||+.+....... ....+.++.++++++.+++.+ ..++.+.+
T Consensus 71 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 146 (250)
T PRK14262 71 DIYDPQLDVTEYRKKVGMVFQKPTPFP-MSIYDNVAFGPRIHGV--KSKHKLDRIVEESLKKAALWDEVKSELNKPGTR- 146 (250)
T ss_pred EcccchhhHHHhhhhEEEEecCCccCc-ccHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHcCCCchhHHHHhCChhh-
Confidence 8742 24678999999998887 8999999987543211 122334456788999999854 34555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|+|||||+|||+.++..+.+.|+++++ ++|||++||++ +.+.+++|+++
T Consensus 147 -------LS~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tili~sH~~-~~~~~~~d~i~ 216 (250)
T PRK14262 147 -------LSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSE--NYTIVIVTHNI-GQAIRIADYIA 216 (250)
T ss_pred -------cCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhc--CcEEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 57889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 217 ~l~~G~i~~~g~~~~~~ 233 (250)
T PRK14262 217 FMYRGELIEYGPTREIV 233 (250)
T ss_pred EEECCEEEEecCHHHHH
Confidence 99999999999988764
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=328.43 Aligned_cols=220 Identities=19% Similarity=0.195 Sum_probs=183.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|++
T Consensus 2 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 66 (253)
T TIGR02323 2 PLLQVSGLSKSY--GGGKGCRDVSFDL-----YPGEVLGIVGES-----GSGKSTLLGCLAGRLAP---DHGTATYIMRS 66 (253)
T ss_pred ceEEEeeeEEEe--CCceEeecceEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEEeccc
Confidence 467899999987 5567899999999 677788888777 89999999999999998 58999999987
Q ss_pred -----cCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 96 -----VEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 96 -----~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
+.. . .++.+||++|++. +.+.+|+.||+.+........ ...+..++++++++.+|+. +..++
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~l~l~~~~~~~ 144 (253)
T TIGR02323 67 GAELELYQLSEAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR--HYGNIRAAAHDWLEEVEIDPTRIDD 144 (253)
T ss_pred ccccccccCCHHHHHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc--chHHHHHHHHHHHHHcCCChhhhhc
Confidence 532 1 2457999999864 566789999997643211100 1123346788999999997 46777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.
T Consensus 145 ~~~~--------LSgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~-~~~~~~ 215 (253)
T TIGR02323 145 LPRA--------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDL-GVARLL 215 (253)
T ss_pred Cchh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 688889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+|++++|++|+++..|+++++.
T Consensus 216 ~d~~~~l~~G~i~~~~~~~~~~ 237 (253)
T TIGR02323 216 AQRLLVMQQGRVVESGLTDQVL 237 (253)
T ss_pred cCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999988664
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=323.49 Aligned_cols=204 Identities=23% Similarity=0.379 Sum_probs=176.1
Q ss_pred cccccccceeeeEeeeeEEEEcccCCC-cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----
Q psy2519 24 DFSEIVGSVQVYAIVNLLVIMDQTAST-SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---- 98 (622)
Q Consensus 24 ~~~~~~g~~~~l~~v~l~~~~~~~~~~-~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---- 98 (622)
++....|...+ ++|+.. ++ |.+++-|. ||||||||+|+|+|+.+| .+|.|.+||+-+.+
T Consensus 5 ~~~~~lG~~~l--~a~~~~------p~~GvTAlFG~-----SGsGKTslin~IaGL~rP---deG~I~lngr~L~Ds~k~ 68 (352)
T COG4148 5 NFRQRLGNFAL--DANFTL------PARGITALFGP-----SGSGKTSLINMIAGLTRP---DEGRIELNGRVLVDAEKG 68 (352)
T ss_pred ehhhhcCceEE--EEeccC------CCCceEEEecC-----CCCChhhHHHHHhccCCc---cccEEEECCEEeecccCC
Confidence 34444455433 445554 45 66666655 589999999999999999 59999999997643
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.-+|+|||||||..|||++||+.||.|+.... .....+++.+.+|++|..++++.+ |||
T Consensus 69 i~lp~~~RriGYVFQDARLFpH~tVrgNL~YG~~~~---------~~~~fd~iv~lLGI~hLL~R~P~~--------LSG 131 (352)
T COG4148 69 IFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKS---------MRAQFDQLVALLGIEHLLDRYPGT--------LSG 131 (352)
T ss_pred cccChhhheeeeEeeccccccceEEecchhhhhccc---------chHhHHHHHHHhCcHHHHhhCCCc--------cCc
Confidence 24789999999999999999999999986432 234567899999999999999777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+++|++|+||||.+.||-.-..+++-.|.+++++.+..|+.|||.+ +|+.+++|+|++|++|++.+.
T Consensus 132 GEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~-~Ev~RLAd~vV~le~GkV~A~ 210 (352)
T COG4148 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSL-DEVLRLADRVVVLENGKVKAS 210 (352)
T ss_pred chhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCH-HHHHhhhheEEEecCCeEEec
Confidence 9999999999999999999999999999999999999999999998899999999996 799999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+.+++.
T Consensus 211 g~~e~v~ 217 (352)
T COG4148 211 GPLEEVW 217 (352)
T ss_pred CcHHHHh
Confidence 9999775
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-39 Score=328.52 Aligned_cols=221 Identities=18% Similarity=0.262 Sum_probs=185.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||+++| ++..+++++|+++ ++|+.+.++|+| ||||||||++|+|+.+|+. ..+|+|.++|+
T Consensus 7 ~l~~~nl~~~~--~~~~il~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~ 74 (261)
T PRK14258 7 AIKVNNLSFYY--DTQKILEGVSMEI-----YQSKVTAIIGPS-----GCGKSTFLKCLNRMNELESEVRVEGRVEFFNQ 74 (261)
T ss_pred eEEEeeEEEEe--CCeeEeeceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCCCCCccccceEEECCE
Confidence 57899999987 5667999999999 678888888777 8999999999999998731 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. .+++.++|++|++.+++ +|++||+.+....... .+..+..+++.++++.+++.+ ..++.+.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 150 (261)
T PRK14258 75 NIYERRVNLNRLRRQVSMVHPKPNLFP-MSVYDNVAYGVKIVGW--RPKLEIDDIVESALKDADLWDEIKHKIHKSALD- 150 (261)
T ss_pred EhhccccchHHhhccEEEEecCCccCc-ccHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchhhhHhcCCccc-
Confidence 8631 35678999999988888 8999999886543211 122333456788999999854 34555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++++.|.|||++||++ .++.++||+++
T Consensus 151 -------LSgGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~-~~i~~~~d~i~ 222 (261)
T PRK14258 151 -------LSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNL-HQVSRLSDFTA 222 (261)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhcCEEE
Confidence 9999999999999999999999999999999999999999999999764589999999996 68899999999
Q ss_pred eecC-----CceEEecChHHHH
Q psy2519 245 LLAD-----SRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~-----G~iv~~G~~~~~~ 261 (622)
+|++ |++++.|+++++.
T Consensus 223 ~l~~~~~~~G~i~~~~~~~~~~ 244 (261)
T PRK14258 223 FFKGNENRIGQLVEFGLTKKIF 244 (261)
T ss_pred EEccCCCcCceEEEeCCHHHHH
Confidence 9999 9999999999874
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=330.71 Aligned_cols=219 Identities=19% Similarity=0.286 Sum_probs=180.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++|+++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 21 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 88 (268)
T PRK14248 21 ILEVKDLSIYY--GEKRAVNDISMDI-----EKHAVTALIGPS-----GCGKSTFLRSINRMNDLIPSARSEGEILYEGL 88 (268)
T ss_pred eEEEEEEEEEe--CCceeeeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcccccCCCCCceEEEECCE
Confidence 47889999987 5677999999999 677788888887 8999999999999864 10015899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++. |+.||+.+....... .......+.+.+.++.+++. +..++.+++
T Consensus 89 ~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 164 (268)
T PRK14248 89 NILDSNINVVNLRREIGMVFQKPNPFPK-SIYNNITHALKYAGE--RRKSVLDEIVEESLTKAALWDEVKDRLHSSALS- 164 (268)
T ss_pred EcccccccHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCCcchHHHHhcCccc-
Confidence 8742 246789999999988885 999999987543211 11222345577888888885 334566555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||++
T Consensus 165 -------LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~~~~~~d~v~ 234 (268)
T PRK14248 165 -------LSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKE--EYSIIIVTHNM-QQALRVSDRTA 234 (268)
T ss_pred -------CCHHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhc--CCEEEEEEeCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 235 ~l~~G~i~~~~~~~~~~ 251 (268)
T PRK14248 235 FFLNGDLVEYDQTEQIF 251 (268)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=317.67 Aligned_cols=198 Identities=25% Similarity=0.333 Sum_probs=170.9
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 i~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~~ 65 (206)
T TIGR03608 1 LKNISKKF--GDKIILDDLNLTI-----EKGKMYAIIGES-----GSGKSTLLNIIGLLEKF---DSGQVYLNGKETPPL 65 (206)
T ss_pred CcceEEEE--CCEEEEeceEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCEEcccc
Confidence 57899986 5678999999999 677788888777 89999999999999998 58999999998531
Q ss_pred -------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 99 -------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 99 -------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
..++.++|++|++.+++.+|++||+.+...... ..+.+..++++++++.+||.+..++.+.+
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~e~~~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 134 (206)
T TIGR03608 66 NSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKK---LSKKEKREKKKEALEKVGLNLKLKQKIYE-------- 134 (206)
T ss_pred chhhHHHHHHhCeeEEecchhhccCCcHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCchhhhcCChhh--------
Confidence 246789999999999999999999998754321 22344456788999999998888888766
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +. .+.||++++|
T Consensus 135 lS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~-~~~~d~i~~l 206 (206)
T TIGR03608 135 LSGGEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELND-EGKTIIIVTHDP-EV-AKQADRVIEL 206 (206)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HH-HhhcCEEEeC
Confidence 999999999999999999999999999999999999999999999987 599999999997 44 4689999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=372.21 Aligned_cols=229 Identities=24% Similarity=0.341 Sum_probs=189.2
Q ss_pred eEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 10 TVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
....-.+.++++||+|.|...+.++|+|+|+++ ++|+.++|+|++ |||||||+|+|+|+.+| .+|+|
T Consensus 464 ~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I-----~~Ge~vaIvG~S-----GsGKSTL~KLL~gly~p---~~G~I 530 (709)
T COG2274 464 HLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEI-----PPGEKVAIVGRS-----GSGKSTLLKLLLGLYKP---QQGRI 530 (709)
T ss_pred cccccCceEEEEEEEEEeCCCCcchhhceeEEe-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceE
Confidence 455566789999999999766668999999999 678888888775 89999999999999999 59999
Q ss_pred EECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
++||.|++. .+|+++|||+||+.++.. |++||+.++......+..-...+.+-+++.+. .++...|+.+++
T Consensus 531 ~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~g-SI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~--~lP~gy~t~v~E-- 605 (709)
T COG2274 531 LLDGVDLNDIDLASLRRQVGYVLQDPFLFSG-SIRENIALGNPEATDEEIIEAAQLAGAHEFIE--NLPMGYDTPVGE-- 605 (709)
T ss_pred EECCEeHHhcCHHHHHhheeEEcccchhhcC-cHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHH--hccccccccccc--
Confidence 999999876 489999999999988766 99999998753221111111111122333333 345567888877
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
...+||||||||++|||||+++|+||+||||||+||+.+.+.|.+.|.++.+ |+|+|+++|.+ ...+.||||++
T Consensus 606 --~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~--~~T~I~IaHRl--~ti~~adrIiV 679 (709)
T COG2274 606 --GGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ--GRTVIIIAHRL--STIRSADRIIV 679 (709)
T ss_pred --CCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhc--CCeEEEEEccc--hHhhhccEEEE
Confidence 2356999999999999999999999999999999999999999999999974 79999999997 56789999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|+++.+|+.+|+.+
T Consensus 680 l~~Gkiv~~gs~~ell~ 696 (709)
T COG2274 680 LDQGKIVEQGSHEELLA 696 (709)
T ss_pred ccCCceeccCCHHHHHH
Confidence 99999999999998874
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-39 Score=395.91 Aligned_cols=225 Identities=22% Similarity=0.249 Sum_probs=200.9
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|.|..+++.+++++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I-----~~GEi~gLLG~N-----GAGKTTLlkmL~Gll~p---tsG~I~i~G~ 2001 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGV-----RPGECFGLLGVN-----GAGKTTTFKMLTGDTTV---TSGDATVAGK 2001 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEE-----cCCcEEEEECCC-----CCcHHHHHHHHhCCCCC---CccEEEECCE
Confidence 3568899999998432467999999999 788888888887 79999999999999999 4899999999
Q ss_pred ecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 PVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 ~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
++.. +.++.+||++|++.+++.+||+|++.+.++++. .++++.+++++++++.+||.+.+|+++++
T Consensus 2002 ~i~~~~~~~r~~IGy~pQ~~~L~~~LTv~E~L~l~a~l~g---~~~~~~~~~v~~lLe~lgL~~~~dk~~~~-------- 2070 (2272)
T TIGR01257 2002 SILTNISDVHQNMGYCPQFDAIDDLLTGREHLYLYARLRG---VPAEEIEKVANWSIQSLGLSLYADRLAGT-------- 2070 (2272)
T ss_pred ECcchHHHHhhhEEEEeccccCCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCHHHhcCChhh--------
Confidence 9853 357789999999999999999999999877653 23344566788999999999999999887
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+||+||+.+|++|||||||+||||.+++++++.|+++++ +|+|||++||++ +++.++|||+++|++|++
T Consensus 2071 LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~-~g~TIILtTH~m-ee~e~lcDrV~IL~~G~i 2148 (2272)
T TIGR01257 2071 YSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIR-EGRAVVLTSHSM-EECEALCTRLAIMVKGAF 2148 (2272)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 799999999999999999
Q ss_pred EEecChHHHHHHHH
Q psy2519 252 AFIGSKDAALAFLE 265 (622)
Q Consensus 252 v~~G~~~~~~~~~~ 265 (622)
+..|+++++...+.
T Consensus 2149 ~~~Gs~q~Lk~~~g 2162 (2272)
T TIGR01257 2149 QCLGTIQHLKSKFG 2162 (2272)
T ss_pred EEECCHHHHHHHhC
Confidence 99999999877664
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-39 Score=331.80 Aligned_cols=219 Identities=20% Similarity=0.239 Sum_probs=181.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~ 92 (622)
..+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.++.. ..+|+|.++
T Consensus 11 ~~~l~i~nl~~~~--~~~~il~~is~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~ 78 (269)
T PRK14259 11 NIIISLQNVTISY--GTFEAVKNVFCDI-----PRGKVTALIGPS-----GCGKSTVLRSLNRMNDLIEGCSLKGRVLFD 78 (269)
T ss_pred CceEEEEeEEEEE--CCEEEEcceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEEC
Confidence 3468899999986 6678999999999 677788888877 8999999999999987310 158999999
Q ss_pred CEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 93 GKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
|+++.. ..++.+|||+|++.+++. ||+||+.+....+. .. .+..++++++++.+++. +..++.+.
T Consensus 79 g~~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 153 (269)
T PRK14259 79 GTDLYDPRVDPVEVRRRIGMVFQQPNPFPK-SIYENIAFGARING---YT-GDMDELVERSLRKAAVWDECKDKLNESGY 153 (269)
T ss_pred CEEcccccCCHHHHhhceEEEccCCccchh-hHHHHHhhhhhhcC---Cc-HHHHHHHHHHHHHhCCcchhhhhhCCCcc
Confidence 998741 356789999999988884 99999998764432 11 12345567888888874 34566655
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++||+
T Consensus 154 ~--------LS~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~--~~tiiivtH~~-~~~~~~~d~ 222 (269)
T PRK14259 154 S--------LSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKK--NFTIVIVTHNM-QQAVRVSDM 222 (269)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCE
Confidence 5 999999999999999999999999999999999999999999999953 68999999996 688899999
Q ss_pred eeeecC-----------CceEEecChHHHH
Q psy2519 243 IILLAD-----------SRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~-----------G~iv~~G~~~~~~ 261 (622)
+++|++ |++++.|+++++.
T Consensus 223 i~~l~~~~~~~~~~g~~g~~~~~~~~~~~~ 252 (269)
T PRK14259 223 TAFFNAEEVEGGSGGKVGYLVEFNETKKIF 252 (269)
T ss_pred EEEEeccccccccccccceEEEeCCHHHHH
Confidence 999996 6789999998775
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=323.60 Aligned_cols=201 Identities=24% Similarity=0.337 Sum_probs=170.7
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++... ....+|++|++.++
T Consensus 1 l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~-~~~~~~v~q~~~l~ 66 (230)
T TIGR01184 1 LKGVNLTI-----QQGEFISLIGHS-----GCGKSTLLNLISGLAQP---TSGGVILEGKQITEP-GPDRMVVFQNYSLL 66 (230)
T ss_pred CCceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEECCCC-ChhheEEecCcccC
Confidence 35778888 577788888777 89999999999999998 599999999987642 22358999999999
Q ss_pred CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 115 ~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
+.+||+||+.+....... ...+.+.+++++++++.+||.+..++.+++ ||||||||++|||+|+.+|++||
T Consensus 67 ~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~qrv~la~al~~~p~lll 137 (230)
T TIGR01184 67 PWLTVRENIALAVDRVLP-DLSKSERRAIVEEHIALVGLTEAADKRPGQ--------LSGGMKQRVAIARALSIRPKVLL 137 (230)
T ss_pred CCCCHHHHHHHHHHhccc-CCCHHHHHHHHHHHHHHcCCHHHHcCChhh--------CCHHHHHHHHHHHHHHcCCCEEE
Confidence 999999999886431111 123344456788999999999888888766 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHH
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 259 (622)
|||||+|||+.++.++.+.|++++++.|+|||++||++ +++.++||++++|++|+++..|+..+
T Consensus 138 LDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~-~~~~~~~d~v~~l~~G~i~~~~~~~~ 201 (230)
T TIGR01184 138 LDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDV-DEALLLSDRVVMLTNGPAANIGQILE 201 (230)
T ss_pred EcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCcEecccCcee
Confidence 99999999999999999999999875589999999996 67889999999999999999886553
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-39 Score=326.03 Aligned_cols=219 Identities=20% Similarity=0.264 Sum_probs=182.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~il~~~s~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 71 (251)
T PRK14249 4 KIKIRGVNFFY--HKHQVLKNINMDF-----PERQITAIIGPS-----GCGKSTLLRALNRMNDIVSGARLEGAVLLDNE 71 (251)
T ss_pred eEEEEEEEEEE--CCeeEecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCccccCCcccEEEECCE
Confidence 57789999986 5677999999999 677788888777 8999999999999998731 12699999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++. ||+||+.+....+... .+++..+.++++++.+++.+ ..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 147 (251)
T PRK14249 72 NIYSPNLDVVNLRKRVGMVFQQPNPFPK-SIFDNVAFGPRMLGTT--AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLA- 147 (251)
T ss_pred EccccccChHHhhceEEEEecCCccCcC-cHHHHHhhHHHhcCCC--hhhHHHHHHHHHHHHhCCchhhhhHhhCCccc-
Confidence 8742 357889999999988875 9999999876433211 12223455777888888753 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ +++|||++||++ +++.+.||+++
T Consensus 148 -------LS~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~~tilivsh~~-~~~~~~~d~i~ 217 (251)
T PRK14249 148 -------LSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELK--QNYTIAIVTHNM-QQAARASDWTG 217 (251)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHh--cCCEEEEEeCCH-HHHHhhCCEEE
Confidence 99999999999999999999999999999999999999999999994 479999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14249 218 FLLTGDLVEYGRTGEIF 234 (251)
T ss_pred EEeCCeEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-39 Score=329.45 Aligned_cols=221 Identities=22% Similarity=0.297 Sum_probs=187.1
Q ss_pred CcccCCcccccccc-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
+++++||++.|..| +.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~sG~i 69 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSL-----KSGETVALLGRS-----GCGKSTLARLLVGLESP---SQGNV 69 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEE
Confidence 36789999998431 467999999999 677788888777 89999999999999988 59999
Q ss_pred EECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCC
Q psy2519 90 RVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHT 159 (622)
Q Consensus 90 ~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~ 159 (622)
.++|+++.. ..++.+||++|++ .+++..|+.|++.+...... .....+..++++++++.+|+. +..++
T Consensus 70 ~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~ 147 (268)
T PRK10419 70 SWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAVDLDDSVLDK 147 (268)
T ss_pred EECCEeccccChhHHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhc--cCCHHHHHHHHHHHHHHcCCChhHhhC
Confidence 999998743 2467899999997 47788999999987543211 112334456789999999996 56777
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.++
T Consensus 148 ~~~~--------LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~-~~i~~~ 218 (268)
T PRK10419 148 RPPQ--------LSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDL-RLVERF 218 (268)
T ss_pred CCcc--------CChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 688889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++++|++|++++.|+++++.
T Consensus 219 ~d~i~~l~~G~i~~~g~~~~~~ 240 (268)
T PRK10419 219 CQRVMVMDNGQIVETQPVGDKL 240 (268)
T ss_pred CCEEEEEECCEEeeeCChhhcc
Confidence 9999999999999999988754
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=327.58 Aligned_cols=227 Identities=18% Similarity=0.221 Sum_probs=187.2
Q ss_pred ceEEeec---CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--C
Q psy2519 9 KTVILFK---NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--C 83 (622)
Q Consensus 9 ~~~~~~~---~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~ 83 (622)
..+|++- ..++++||+++| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|. .
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~--~~~~il~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~~~~ 76 (267)
T PRK14237 9 RHIITFPEEEIALSTKDLHVYY--GKKEAIKGIDMQF-----EKNKITALIGPS-----GSGKSTYLRSLNRMNDTIDIA 76 (267)
T ss_pred ceeEecCCCCeEEEEeeEEEEE--CCeeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCccCCC
Confidence 3455553 457889999987 6678999999999 678888888777 899999999999998641 0
Q ss_pred ceeeEEEECCEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--
Q psy2519 84 IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-- 155 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-- 155 (622)
..+|+|.++|+++.. ..++.+|||+|++.+++ .||+||+.++..... ...+.+..+++.++++.++|.+
T Consensus 77 ~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~i 153 (267)
T PRK14237 77 RVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFA-KSIYENITFALERAG--VKDKKVLDEIVETSLKQAALWDQV 153 (267)
T ss_pred CcceEEEECCEEcccccCChHHHhcceEEEecCCcccc-ccHHHHHHhHHHhcC--CCCHHHHHHHHHHHHHHcCCCchh
Confidence 158999999998742 24778999999988887 599999998754321 1123344566888999999853
Q ss_pred --ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 156 --SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 156 --~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
..++.+++ ||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++
T Consensus 154 ~~~~~~~~~~--------LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~- 222 (267)
T PRK14237 154 KDDLHKSALT--------LSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKK--NYTIIIVTHNM- 222 (267)
T ss_pred hhhhcCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-
Confidence 34555444 999999999999999999999999999999999999999999999953 68999999996
Q ss_pred HHHHhhccceeeecCCceEEecChHHHH
Q psy2519 234 SELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 234 ~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+++.++||++++|++|++++.|+++++.
T Consensus 223 ~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 250 (267)
T PRK14237 223 QQAARASDYTAFFYLGDLIEYDKTRNIF 250 (267)
T ss_pred HHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 6788999999999999999999998764
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=321.35 Aligned_cols=209 Identities=23% Similarity=0.350 Sum_probs=179.4
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++++||++.|..+ ..++++++|+++ .+|+.+.|+|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i-----~~G~~~~I~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~ 68 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEI-----NPGEIVILTGPS-----GSGKTTLLTLIGGLRSV---QEGSLKVLGQE 68 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEE
Confidence 4678999987432 267999999999 677788888777 89999999999999998 59999999998
Q ss_pred cCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 96 VEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
+.. ..++.++|++|++.+++.+|+.||+.+....... ...++..++++++++.+||.+..++.+.+
T Consensus 69 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 141 (220)
T TIGR02982 69 LYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMALELQPN--LSYQEARERARAMLEAVGLGDHLDYYPHN----- 141 (220)
T ss_pred hHhcCHhHHHHHHhheEEEcCChhhcCCCCHHHHHHHHHHhccC--CCHHHHHHHHHHHHHHcCChhhhhcChhh-----
Confidence 753 2467899999999999999999999987654321 23344556789999999998888888666
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|||++||++ + ..++||++++|++
T Consensus 142 ---lS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~-~-~~~~~d~v~~l~~ 216 (220)
T TIGR02982 142 ---LSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDN-R-ILDVADRIVHMED 216 (220)
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCH-H-HHhhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999875589999999996 3 5689999999999
Q ss_pred Cce
Q psy2519 249 SRT 251 (622)
Q Consensus 249 G~i 251 (622)
|++
T Consensus 217 g~~ 219 (220)
T TIGR02982 217 GKL 219 (220)
T ss_pred CEE
Confidence 986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=325.57 Aligned_cols=219 Identities=20% Similarity=0.288 Sum_probs=182.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+|. ...+|+|.++|.
T Consensus 3 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~ 70 (249)
T PRK14253 3 KFNIENLDLFY--GENQALKSINLPI-----PARQVTALIGPS-----GCGKSTLLRCLNRMNDLIEGVKITGKLTMDGE 70 (249)
T ss_pred eEEEeccEEEE--CCeeeeecceEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcccccCCCCceEEEECCE
Confidence 46789999986 5678999999999 678888888887 899999999999998852 014899999999
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~ 165 (622)
++.. ..++.+||++|++.+++ .||.||+.+...... ...+....+++.+.++.+++.+ ..++.+++
T Consensus 71 ~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-- 145 (249)
T PRK14253 71 DIYGNIDVADLRIKVGMVFQKPNPFP-MSIYENVAYGLRAQG--IKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFG-- 145 (249)
T ss_pred EcccccchHHHHhheeEEecCCCcCc-ccHHHHHHhHHHhcC--CCchHHHHHHHHHHHHHcCCchhhhHHhhcCccc--
Confidence 8742 35678999999998887 899999988754321 1122334456778888888753 34455444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||++++
T Consensus 146 ------LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~~~d~i~~ 216 (249)
T PRK14253 146 ------LSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKK--NYTIVIVTHSM-QQARRISDRTAF 216 (249)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEecCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 217 l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 217 FLMGELVEHDDTQVIF 232 (249)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999988653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-39 Score=365.58 Aligned_cols=221 Identities=19% Similarity=0.246 Sum_probs=190.4
Q ss_pred CcccCCccccccc--c-------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 17 NEEVPNVDFSEIV--G-------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 17 ~~~~~~~~~~~~~--g-------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
.++++||+++|.. + ..++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~lvG~n-----GsGKSTLlk~i~Gl~~p---~~G 379 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDL-----WPGETLSLVGES-----GSGKSTTGRALLRLVES---QGG 379 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCc
Confidence 5889999999842 1 257999999999 677788888776 89999999999999998 589
Q ss_pred EEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-ccc
Q psy2519 88 DIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQ 157 (622)
Q Consensus 88 ~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~ 157 (622)
+|.++|+++.. .+++.+|||||++ .++|.+||.||+.+....+.. ..+.+.+++++++++.+||. +..
T Consensus 380 ~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~--~~~~~~~~~~~~~L~~~gL~~~~~ 457 (623)
T PRK10261 380 EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGL--LPGKAAAARVAWLLERVGLLPEHA 457 (623)
T ss_pred EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCHHHh
Confidence 99999998743 1467899999996 589999999999987544321 12334456788999999996 567
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||+ +.+.
T Consensus 458 ~~~~~~--------LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl-~~v~ 528 (623)
T PRK10261 458 WRYPHE--------FSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM-AVVE 528 (623)
T ss_pred hCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHH
Confidence 888666 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||++|++|++++.|+++++.
T Consensus 529 ~~~dri~vl~~G~iv~~g~~~~i~ 552 (623)
T PRK10261 529 RISHRVAVMYLGQIVEIGPRRAVF 552 (623)
T ss_pred HhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999875
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=325.36 Aligned_cols=219 Identities=19% Similarity=0.293 Sum_probs=181.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 4 ~l~~~~l~~~~--~~~~~l~~~sl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~ 71 (251)
T PRK14251 4 IISAKDVHLSY--GNYEALHGISLDF-----EEKELTALIGPS-----GCGKSTFLRCLNRMNDDIENIKITGEIKFEGQ 71 (251)
T ss_pred eEEEEeeEEEE--CCeeeeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhccccccCCCcceEEEECCE
Confidence 46789999986 6678999999999 677788888777 8999999999999986 21114899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++ .||+||+.+....... ...+...++++++++.+++. +..++.+.+
T Consensus 72 ~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 147 (251)
T PRK14251 72 NIYGSKMDLVELRKEVGMVFQQPTPFP-FSVYDNVAYGLKIAGV--KDKELIDQRVEESLKQAAIWKETKDNLDRNAQA- 147 (251)
T ss_pred EcccccchHHHhhccEEEEecCCccCC-CcHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHHcCCCcchHHHhccChhh-
Confidence 8742 25678999999988886 7999999886543211 11222345678899999984 334555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||+++
T Consensus 148 -------LS~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiiiisH~~-~~~~~~~d~i~ 217 (251)
T PRK14251 148 -------FSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKH--QYTFIMVTHNL-QQAGRISDQTA 217 (251)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHc--CCeEEEEECCH-HHHHhhcCEEE
Confidence 999999999999999999999999999999999999999999999954 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 218 ~l~~G~i~~~~~~~~~~ 234 (251)
T PRK14251 218 FLMNGDLIEAGPTEEMF 234 (251)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-39 Score=315.52 Aligned_cols=194 Identities=28% Similarity=0.459 Sum_probs=164.4
Q ss_pred cccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++||+|+|+.| +.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|....+|+|.++|++
T Consensus 4 ~~~~~~~~~~~~~~~~~~il~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~ 73 (202)
T cd03233 4 LSWRNISFTTGKGRSKIPILKDFSGVV-----KPGEMVLVLGRP-----GSGCSTLLKALANRTEGNVSVEGDIHYNGIP 73 (202)
T ss_pred EEEEccEEEeccCCCCceeeeeEEEEE-----CCCcEEEEECCC-----CCCHHHHHHHhcccCCCCCCcceEEEECCEE
Confidence 4689999999765 678999999999 678888888777 8999999999999998311158999999998
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+.. ..++.++|++|++.+++.+||+||+.+..... .++.+.+ |
T Consensus 74 ~~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~--------------------------~~~~~~~--------L 119 (202)
T cd03233 74 YKEFAEKYPGEIIYVSEEDVHFPTLTVRETLDFALRCK--------------------------GNEFVRG--------I 119 (202)
T ss_pred CccchhhhcceEEEEecccccCCCCcHHHHHhhhhhhc--------------------------cccchhh--------C
Confidence 754 35778999999999999999999998764210 3444444 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|||||||+|||+.++..+.+.|++++++.+.|+|+++|+..+++.+.||++++|++|+++
T Consensus 120 S~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~ 199 (202)
T cd03233 120 SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQI 199 (202)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999987446777776665446888999999999999998
Q ss_pred Eec
Q psy2519 253 FIG 255 (622)
Q Consensus 253 ~~G 255 (622)
+.|
T Consensus 200 ~~g 202 (202)
T cd03233 200 YYG 202 (202)
T ss_pred ecC
Confidence 765
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=356.76 Aligned_cols=216 Identities=18% Similarity=0.228 Sum_probs=185.7
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~ 65 (491)
T PRK10982 1 MSNISKSF--PGVKALDNVNLKV-----RPHSIHALMGEN-----GAGKSTLLKCLFGIYQK---DSGSILFQGKEIDFK 65 (491)
T ss_pred CCceEEEe--CCEEeeeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CceEEEECCEECCCC
Confidence 47899986 6678999999999 677788888777 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+|||+|++.+++.+||+||+.++.........+..+..++++++++.+++.+..++.+++ |||
T Consensus 66 ~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 137 (491)
T PRK10982 66 SSKEALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVAT--------LSV 137 (491)
T ss_pred CHHHHHhCCEEEEecccccccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhh--------CCH
Confidence 24678999999998999999999998864211110012233456788999999998888888777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ .|+|||++||++ +++.++||++++|++|+++..
T Consensus 138 Gq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvii~tH~~-~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 138 SQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKE-RGCGIVYISHKM-EEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999999999999999987 699999999996 688899999999999999999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|++++.
T Consensus 216 ~~~~~~ 221 (491)
T PRK10982 216 QPLAGL 221 (491)
T ss_pred cChhhC
Confidence 987764
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=324.19 Aligned_cols=220 Identities=19% Similarity=0.285 Sum_probs=180.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G 93 (622)
.+++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+ |....+|+|.++|
T Consensus 4 ~~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 71 (252)
T PRK14255 4 KIITSSDVHLFY--GKFEALKGIDLDF-----NQNEITALIGPS-----GCGKSTYLRTLNRMNDLIPGVTITGNVSLRG 71 (252)
T ss_pred ceEEEEeEEEEE--CCeeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCcccEEEEcC
Confidence 357899999986 5678999999999 677788888777 8999999999999875 3211489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++ .||+||+.+....+... ..+...+++.+.++.+++. +..++.+++
T Consensus 72 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~ 148 (252)
T PRK14255 72 QNIYAPNEDVVQLRKQVGMVFQQPNPFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESALS 148 (252)
T ss_pred EEcccccccHHHhcCeEEEEECCCccCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCccc
Confidence 98742 35678999999988888 69999999875433211 1222234567788888774 334555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||++
T Consensus 149 --------LS~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~vsH~~-~~~~~~~d~i 217 (252)
T PRK14255 149 --------LSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRD--QYTIILVTHSM-HQASRISDKT 217 (252)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEECCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 6788899999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|++.++.
T Consensus 218 ~~l~~G~i~~~~~~~~~~ 235 (252)
T PRK14255 218 AFFLTGNLIEFADTKQMF 235 (252)
T ss_pred EEEECCEEEEeCCHHHHh
Confidence 999999999999988764
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=320.80 Aligned_cols=206 Identities=22% Similarity=0.261 Sum_probs=173.0
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-CceeeEEEECCEecCc-c-ccccEEEEecC
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-CIIDGDIRVNGKPVEG-K-FRSACGFMYQH 110 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-~~~~G~I~~~G~~~~~-~-~r~~igyV~Q~ 110 (622)
+++++|+++ ++|+.++++|+| |||||||+|+|+|+.+|. ...+|+|.++|+++.. . .++.+||++|+
T Consensus 1 ~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~~~~~~~i~~~~q~ 70 (230)
T TIGR02770 1 LVQDLNLSL-----KRGEVLALVGES-----GSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIRGRHIATIMQN 70 (230)
T ss_pred CccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCCccCccccEEEECCEechhhhhhhheeEEEecC
Confidence 467889888 677788888887 899999999999999871 0038999999998864 2 24689999999
Q ss_pred CC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC---cccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 111 DL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM---NSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 111 ~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~---~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
+. +.+.+|++||+.+....... ...+..++++++++.++|. +..++.+++ |||||||||+|||+
T Consensus 71 ~~~~~~~~~t~~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~--------LS~G~~qrv~lara 139 (230)
T TIGR02770 71 PRTAFNPLFTMGNHAIETLRSLGK---LSKQARALILEALEAVGLPDPEEVLKKYPFQ--------LSGGMLQRVMIALA 139 (230)
T ss_pred chhhcCcccCHHHHHHHHHHHcCc---cHHHHHHHHHHHHHHcCCCchHHHHhCChhh--------cCHHHHHHHHHHHH
Confidence 74 66789999999876543211 1233456788999999997 456777666 99999999999999
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+.+|++|+|||||+|||+.++..+.+.|++++++.|+|||++||++ +++.+.+|++++|++|+++..|+++++.
T Consensus 140 l~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 214 (230)
T TIGR02770 140 LLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDL-GVVARIADEVAVMDDGRIVERGTVKEIF 214 (230)
T ss_pred HhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999874589999999996 6888899999999999999999988764
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-38 Score=326.61 Aligned_cols=219 Identities=18% Similarity=0.273 Sum_probs=182.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCc--eeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCI--IDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~--~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|+.. .+|+|.++|+
T Consensus 7 ~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~ 74 (259)
T PRK14260 7 AIKVKDLSFYY--NTSKAIEGISMDI-----YRNKVTAIIGPS-----GCGKSTFIKTLNRISELEGPVKVEGVVDFFGQ 74 (259)
T ss_pred eEEEEEEEEEE--CCeEeecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhcCcccCCccceEEEECCE
Confidence 46789999986 5677999999999 678888888777 89999999999999885311 3899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++ +||+||+.+....+.. .++.+..++++++++.+++. +..++.+.+
T Consensus 75 ~i~~~~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 150 (259)
T PRK14260 75 NIYDPRININRLRRQIGMVFQRPNPFP-MSIYENVAYGVRISAK--LPQADLDEIVESALKGAALWQEVKDKLNKSALG- 150 (259)
T ss_pred eccccccchHhhhhheEEEecccccCC-ccHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHHcCCcchhhhHhcCCccc-
Confidence 8742 24678999999998887 8999999887543321 12233445678889999884 345555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 151 -------LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiii~tH~~-~~i~~~~d~i~ 220 (259)
T PRK14260 151 -------LSGGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRS--ELTIAIVTHNM-QQATRVSDFTA 220 (259)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhcCeEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 68889999999
Q ss_pred eec-----CCceEEecChHHHH
Q psy2519 245 LLA-----DSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~-----~G~iv~~G~~~~~~ 261 (622)
+|+ +|++++.|+++++.
T Consensus 221 ~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 221 FFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred EEeccCCCCceEEEeCCHHHHh
Confidence 998 59999999999764
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-39 Score=325.24 Aligned_cols=218 Identities=25% Similarity=0.311 Sum_probs=174.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|...+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDI-----PAGETVALVGPS-----GSGKSTLVNLIPRFYDV---DSGRILIDGHDVR 67 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccC---CCCEEEECCEEhh
Confidence 3678999987322237899999999 677788888877 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++ .||+||+.+..................+++.++.+ ++.+..++.+.+
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~-------- 138 (234)
T cd03251 68 DYTLASLRRQIGLVSQDVFLFN-DTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK-------- 138 (234)
T ss_pred hCCHHHHHhhEEEeCCCCeecc-ccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc--------
Confidence 3 35678999999988886 69999998764221100000001111345666666 666666666555
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ |.|||++||++ +++.. ||++++|++|++
T Consensus 139 LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~-~d~v~~l~~G~i 214 (234)
T cd03251 139 LSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMK--NRTTFVIAHRL-STIEN-ADRIVVLEDGKI 214 (234)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEecCH-HHHhh-CCEEEEecCCeE
Confidence 999999999999999999999999999999999999999999999963 79999999997 56654 999999999999
Q ss_pred EEecChHHHH
Q psy2519 252 AFIGSKDAAL 261 (622)
Q Consensus 252 v~~G~~~~~~ 261 (622)
+..|+++++.
T Consensus 215 ~~~~~~~~~~ 224 (234)
T cd03251 215 VERGTHEELL 224 (234)
T ss_pred eeeCCHHHHH
Confidence 9999988764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-38 Score=330.33 Aligned_cols=219 Identities=20% Similarity=0.278 Sum_probs=181.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+ |....+|+|.++|+
T Consensus 39 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~ 106 (286)
T PRK14275 39 HVVAKNFSIYY--GEFEAVKKVNADI-----LSKYVTAIIGPS-----GCGKSTFLRAINRMNDLIPSCHTTGALMFDGE 106 (286)
T ss_pred EEEEeeeEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccCCCCCCceEEEECCE
Confidence 46889999987 5567999999999 678888888877 8999999999999864 21014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~~~ 164 (622)
++.. ..++.+|||+|++.+++. ||.||+.+....+.. .+....++++.++++.+|+. +..++.+.+
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 182 (286)
T PRK14275 107 DIYGKFTDEVLLRKKIGMVFQKPNPFPK-SIFDNIAYGPRLHGI--NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALG- 182 (286)
T ss_pred EhhhcccchHHhhhcEEEECCCCCCCcc-CHHHHHHhHHHhcCC--CcHHHHHHHHHHHHHHhCCccchhhHhhCChhh-
Confidence 8742 246789999999988875 999999987543321 12223345677889999874 345666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||++
T Consensus 183 -------LSgGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tvIivsH~~-~~~~~~~d~i~ 252 (286)
T PRK14275 183 -------LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRG--SYTIMIVTHNM-QQASRVSDYTM 252 (286)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999974 58999999996 68888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 253 ~L~~G~i~~~g~~~~~~ 269 (286)
T PRK14275 253 FFYEGVLVEHAPTAQLF 269 (286)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988764
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=323.28 Aligned_cols=222 Identities=19% Similarity=0.222 Sum_probs=182.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC--CCCCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ--VIDDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~--~~~~~~~~G~I~~~ 92 (622)
+.+++++||++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+ .+| .+|+|.++
T Consensus 5 ~~~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~Gl~~~~~---~~G~i~~~ 69 (252)
T CHL00131 5 KPILEIKNLHASV--NENEILKGLNLSI-----NKGEIHAIMGPN-----GSGKSTLSKVIAGHPAYKI---LEGDILFK 69 (252)
T ss_pred CceEEEEeEEEEe--CCEEeeecceeEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCcCcC---CCceEEEC
Confidence 3457899999987 4567999999999 678888888887 89999999999998 356 58999999
Q ss_pred CEecCc----cccc-cEEEEecCCCCCCCCCHHHHHHHHHHcCCC----ccccHHHHHHHHHHHHHHhCCC-cccCCccC
Q psy2519 93 GKPVEG----KFRS-ACGFMYQHDLFSPSLTVYEHLYFMALLKLD----RRVKAYQRIALINSLLIELGLM-NSQHTRIG 162 (622)
Q Consensus 93 G~~~~~----~~r~-~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~----~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~ 162 (622)
|.++.. ..++ .++|++|++.+++.+|+.|++.+....... ......+..+++.++++.+|+. +..++.++
T Consensus 70 g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 149 (252)
T CHL00131 70 GESILDLEPEERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVN 149 (252)
T ss_pred CEEcccCChhhhheeeEEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccc
Confidence 998754 1222 488999999999999999999876432110 0112223345678899999997 45666654
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-cc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FD 241 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D 241 (622)
. .|||||||||+|||+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ +.+... +|
T Consensus 150 ~-------~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~~tH~~-~~~~~~~~d 220 (252)
T CHL00131 150 E-------GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMT-SENSIILITHYQ-RLLDYIKPD 220 (252)
T ss_pred c-------CCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHhhhCC
Confidence 1 2999999999999999999999999999999999999999999999986 689999999996 566666 89
Q ss_pred ceeeecCCceEEecChHHH
Q psy2519 242 KIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~ 260 (622)
++++|++|++++.|+++.+
T Consensus 221 ~i~~l~~G~i~~~~~~~~~ 239 (252)
T CHL00131 221 YVHVMQNGKIIKTGDAELA 239 (252)
T ss_pred EEEEEeCCEEEEecChhhh
Confidence 9999999999999998843
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=308.59 Aligned_cols=220 Identities=23% Similarity=0.280 Sum_probs=199.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |++.+++++|+.+ .+|+.+.++||| ||||||||.+++.+++. .+|+|.++|+++
T Consensus 1 MI~i~nv~K~y--~~~~vl~~isl~i-----~~g~iTs~IGPN-----GAGKSTLLS~~sRL~~~---d~G~i~i~g~~~ 65 (252)
T COG4604 1 MITIENVSKSY--GTKVVLDDVSLDI-----PKGGITSIIGPN-----GAGKSTLLSMMSRLLKK---DSGEITIDGLEL 65 (252)
T ss_pred CeeehhhhHhh--CCEEeeccceeee-----cCCceeEEECCC-----CccHHHHHHHHHHhccc---cCceEEEeeeec
Confidence 57899999996 9999999999999 688899999888 79999999999999998 599999999999
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ++.+.++.+-|+......+||+|-+.|+.-.+. +.....+.+..+++.++.++|++..|++..+ |
T Consensus 66 ~~~~s~~LAk~lSILkQ~N~i~~rlTV~dLv~FGRfPYS-qGRlt~eD~~~I~~aieyl~L~~l~dryLd~--------L 136 (252)
T COG4604 66 TSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYS-QGRLTKEDRRIINEAIEYLHLEDLSDRYLDE--------L 136 (252)
T ss_pred ccCChHHHHHHHHHHHhhchhhheeEHHHHhhcCCCccc-CCCCchHHHHHHHHHHHHhcccchHHHhHHh--------c
Confidence 65 478889999999999999999999999743332 2223355677899999999999999999888 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||.-||+.|+.+.+.++||||.++||-..+.++++.|++++++.|+|||+|.||. ..+-.++|+|+-|++|+++
T Consensus 137 SGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDI-NfAS~YsD~IVAlK~G~vv 215 (252)
T COG4604 137 SGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDI-NFASCYSDHIVALKNGKVV 215 (252)
T ss_pred ccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecc-cHHHhhhhheeeecCCEEE
Confidence 999999999999999999999999999999999999999999999998999999999996 5778899999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+++++.
T Consensus 216 ~~G~~~eii 224 (252)
T COG4604 216 KQGSPDEII 224 (252)
T ss_pred ecCCHHHhc
Confidence 999999886
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=323.87 Aligned_cols=219 Identities=20% Similarity=0.270 Sum_probs=182.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++|+++|+++ .+|+.+.++|+| |||||||+++|+|+..+.. ..+|+|.++|+
T Consensus 6 ~i~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~ 73 (253)
T PRK14261 6 ILSTKNLNLWY--GEKHALYDITISI-----PKNRVTALIGPS-----GCGKSTLLRCFNRMNDLIPGCRITGDILYNGE 73 (253)
T ss_pred eEEEeeeEEEE--CCeeeeeeeEEEE-----CCCcEEEEECCC-----CCCHHHHHHHHhccccCCCCCCcceEEEECCE
Confidence 46789999986 6678999999999 677788888777 8999999999999876311 13799999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.+||++|++.+++. ||+||+.+..+.+.. ....+.++.+.++++.+++.+ ..++.+.+
T Consensus 74 ~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~- 149 (253)
T PRK14261 74 NIMDSGADVVALRRKIGMVFQRPNPFPK-SIYENVAYGPRIHGE--KNKKTLDTIVEKSLKGAALWDEVKDRLHDSALS- 149 (253)
T ss_pred EccccccchhhhhceEEEEecCCccCcc-cHHHHHHhhHHhcCC--CCHHHHHHHHHHHHHHhcCchhhHHHhhcChhh-
Confidence 8742 346789999999988885 999999987654321 122333456788899988853 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+.+|+++
T Consensus 150 -------LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~--~~tvii~sh~~-~~~~~~~d~v~ 219 (253)
T PRK14261 150 -------LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK--EYTVIIVTHNM-QQAARVSDYTG 219 (253)
T ss_pred -------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhh--CceEEEEEcCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999975 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 220 ~l~~G~i~~~g~~~~~~ 236 (253)
T PRK14261 220 FMYLGKLIEFDKTTQIF 236 (253)
T ss_pred EEECCEEEEcCCHHHHH
Confidence 99999999999988764
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=327.19 Aligned_cols=219 Identities=24% Similarity=0.332 Sum_probs=182.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++. ...+|+|.++|+
T Consensus 25 ~l~~~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~ 92 (272)
T PRK14236 25 ALEVRNLNLFY--GDKQALFDISMRI-----PKNRVTAFIGPS-----GCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQ 92 (272)
T ss_pred EEEEEEEEEEE--CCeeEeeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcCCCccCCCCceEEEECCE
Confidence 47899999987 5667999999999 677888888777 899999999999998731 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++|++|++.+++. ||+||+.+....... ..+.+.+++++++++.+++.+ ..++.+.+
T Consensus 93 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~- 168 (272)
T PRK14236 93 NIYDKKVDVAELRRRVGMVFQRPNPFPK-SIYENVVYGLRLQGI--NNRRVLDEAVERSLRGAALWDEVKDRLHENAFG- 168 (272)
T ss_pred ECcccccCHHHHhccEEEEecCCccCcc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCChhHHHHhhCCccc-
Confidence 8752 357789999999988886 999999887543321 122233456788999999853 34555544
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.+.||+++
T Consensus 169 -------LS~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~~~~~~~d~i~ 238 (272)
T PRK14236 169 -------LSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKS--KYTIVIVTHNM-QQAARVSDYTA 238 (272)
T ss_pred -------CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh--CCeEEEEeCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999974 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 239 ~l~~G~i~~~g~~~~~~ 255 (272)
T PRK14236 239 FMYMGKLVEYGDTDTLF 255 (272)
T ss_pred EEECCEEEecCCHHHHh
Confidence 99999999999988663
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=323.65 Aligned_cols=209 Identities=22% Similarity=0.314 Sum_probs=179.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++. .+|+++|+++ .+|+.+.++|+| |||||||+++|+|+.++ +|+|.++|+++..
T Consensus 2 ~~~~l~~~------~~l~~vsl~i-----~~Gei~~l~G~n-----GsGKSTLl~~l~Gl~~~----~G~i~~~g~~i~~ 61 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEV-----RAGEILHLVGPN-----GAGKSTLLARMAGLLPG----SGSIQFAGQPLEA 61 (248)
T ss_pred cccccchh------ceecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC----CeEEEECCEecCc
Confidence 57888884 2799999999 677788888777 89999999999999853 7999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+||++|++.+++.+||.||+.+..... ....+..++++++++.+||.+..++.+++ |||
T Consensus 62 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 129 (248)
T PRK03695 62 WSAAELARHRAYLSQQQTPPFAMPVFQYLTLHQPDK----TRTEAVASALNEVAEALGLDDKLGRSVNQ--------LSG 129 (248)
T ss_pred CCHHHHhhheEEecccCccCCCccHHHHHHhcCccC----CCcHHHHHHHHHHHHHcCCHhHhcCCccc--------CCH
Confidence 24567999999988888999999998863221 12233456788999999998888888776 999
Q ss_pred HHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 175 GERKRLSFATELLT-------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 175 GqrqRvsIA~aL~~-------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||++||++|+. +|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|+
T Consensus 130 G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~~~tvi~~sH~~-~~~~~~~d~i~~l~ 207 (248)
T PRK03695 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQ-QGIAVVMSSHDL-NHTLRHADRVWLLK 207 (248)
T ss_pred HHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHHHHhCCEEEEEE
Confidence 99999999999998 6799999999999999999999999999986 689999999996 67889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 208 ~G~i~~~g~~~~~~ 221 (248)
T PRK03695 208 QGKLLASGRRDEVL 221 (248)
T ss_pred CCEEEEECCHHHHh
Confidence 99999999987653
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=364.32 Aligned_cols=222 Identities=16% Similarity=0.237 Sum_probs=188.6
Q ss_pred CCcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++||+++|.. ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++|
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v-----~~Ge~~~lvG~n-----GsGKSTLl~~l~Gll~p---~~G~i~~~g 77 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSL-----QRGETLAIVGES-----GSGKSVTALALMRLLEQ---AGGLVQCDK 77 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CCeEEEECC
Confidence 36789999999843 2467999999999 678888888776 89999999999999998 489999998
Q ss_pred EecC-------------c----cc-cccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC
Q psy2519 94 KPVE-------------G----KF-RSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 94 ~~~~-------------~----~~-r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL 153 (622)
.++. . .. ++.+|||+|++ .++|.+||.||+.++.+.+. ..+..+.+++++++++.+||
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~--~~~~~~~~~~~~~~l~~~gL 155 (623)
T PRK10261 78 MLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQ--GASREEAMVEAKRMLDQVRI 155 (623)
T ss_pred EEeccccccccccccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCC
Confidence 7441 0 12 25799999997 68899999999999865431 12344556788999999999
Q ss_pred Cc---ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 154 MN---SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 154 ~~---~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
.+ ..++++.+ |||||||||+||+||+.+|++|||||||++||+.++.++.++|++++++.|+|||++||
T Consensus 156 ~~~~~~~~~~~~~--------LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itH 227 (623)
T PRK10261 156 PEAQTILSRYPHQ--------LSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITH 227 (623)
T ss_pred CChhhHHhCCCcc--------CCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcC
Confidence 64 46777666 99999999999999999999999999999999999999999999998756999999999
Q ss_pred cCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 231 QPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 231 ~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+ ..+.++||||++|++|++++.|+++++.
T Consensus 228 dl-~~~~~~adri~vl~~G~i~~~g~~~~~~ 257 (623)
T PRK10261 228 DM-GVVAEIADRVLVMYQGEAVETGSVEQIF 257 (623)
T ss_pred CH-HHHHHhCCEEEEeeCCeecccCCHHHhh
Confidence 96 6888999999999999999999988764
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=347.66 Aligned_cols=222 Identities=27% Similarity=0.368 Sum_probs=188.9
Q ss_pred cceEEeecCCcccC--CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce
Q psy2519 8 SKTVILFKNNEEVP--NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII 85 (622)
Q Consensus 8 ~~~~~~~~~~~~~~--~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~ 85 (622)
.|......+..+++ |+++.|+.|+ +++.++|+++ ++|+.++++|++ |||||||+++|+|+.+| +
T Consensus 309 ~~~~~~~~~~~ei~~~~l~~~y~~g~-~~l~~l~~t~-----~~g~~talvG~S-----GaGKSTLl~lL~G~~~~---~ 374 (559)
T COG4988 309 EKAEVANEPPIEISLENLSFRYPDGK-PALSDLNLTI-----KAGQLTALVGAS-----GAGKSTLLNLLLGFLAP---T 374 (559)
T ss_pred cccccccCCCceeeecceEEecCCCC-cccCCceeEe-----cCCcEEEEECCC-----CCCHHHHHHHHhCcCCC---C
Confidence 34345555666766 9999998777 8999999999 678888888775 89999999999999999 5
Q ss_pred eeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc------
Q psy2519 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN------ 155 (622)
Q Consensus 86 ~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~------ 155 (622)
+|+|.+||.+..+ .+|++++||+|++.+++. |++||+.++..- .+ ++.+.+++++.||.+
T Consensus 375 ~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-TireNi~l~~~~-----~s----~e~i~~al~~a~l~~~v~~p~ 444 (559)
T COG4988 375 QGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-TIRENILLARPD-----AS----DEEIIAALDQAGLLEFVPKPD 444 (559)
T ss_pred CceEEECCccccccCHHHHHhHeeeeCCCCccccc-cHHHHhhccCCc-----CC----HHHHHHHHHHhcHHHhhcCCC
Confidence 9999999998865 489999999999998887 999999986421 12 234566777777754
Q ss_pred ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 156 SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 156 ~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
..|+.+|+ ..+||||||+|||++||||+.+++++++||||++||..+.+.|.+.|.++++ ++|++++||++ .
T Consensus 445 GLdt~ige----~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~--~ktvl~itHrl--~ 516 (559)
T COG4988 445 GLDTVIGE----GGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAK--QKTVLVITHRL--E 516 (559)
T ss_pred cccchhcc----CCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHh--CCeEEEEEcCh--H
Confidence 34666766 4578999999999999999999999999999999999999999999999996 59999999997 4
Q ss_pred HHhhccceeeecCCceEEecChHHHH
Q psy2519 236 LIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 236 i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
...-+|+|++|++|+++..|..+++.
T Consensus 517 ~~~~~D~I~vld~G~l~~~g~~~~L~ 542 (559)
T COG4988 517 DAADADRIVVLDNGRLVEQGTHEELS 542 (559)
T ss_pred HHhcCCEEEEecCCceeccCCHHHHh
Confidence 55789999999999999999999875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=333.77 Aligned_cols=226 Identities=18% Similarity=0.253 Sum_probs=183.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G 93 (622)
+.++++|++++|..++.++|+++|+++ .+|+.++++|+| ||||||||++|+|+.++. ...+|+|.++|
T Consensus 79 ~~i~~~nls~~y~~~~~~~L~~is~~I-----~~Ge~v~IvG~~-----GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG 148 (329)
T PRK14257 79 NVFEIRNFNFWYMNRTKHVLHDLNLDI-----KRNKVTAFIGPS-----GCGKSTFLRNLNQLNDLIEGTSHEGEIYFLG 148 (329)
T ss_pred ceEEEEeeEEEecCCCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECC
Confidence 467899999998545567999999999 677788888776 899999999999998631 11489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
+++.. .+++.++||||++.+++ .|++||+.|+..... ...++...+.+.++++.++|.+..++.+++
T Consensus 149 ~~i~~~~~~~~~lr~~i~~v~q~~~~~~-~ti~eNi~~~~~~~~--~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~---- 221 (329)
T PRK14257 149 TNTRSKKISSLELRTRIGMVFQKPTPFE-MSIFDNVAYGPRNNG--INDRKILEKIVEKSLKSAALWDEVKDDLDK---- 221 (329)
T ss_pred EEccccccchHhhhccEEEEecCCccCC-CcHHHHHHhHHHhcC--CChHHHHHHHHHHHHHHcCCcchhhhhhhC----
Confidence 99852 35788999999998875 799999998754321 111222334567888998885433222222
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
....||||||||++|||||+.+|+||||||||+|||+.+...+.+.|+++++ ++|||++||++ +.+.+.||||++|+
T Consensus 222 ~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~--~~Tii~iTH~l-~~i~~~~Driivl~ 298 (329)
T PRK14257 222 AGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKK--KYSIIIVTHSM-AQAQRISDETVFFY 298 (329)
T ss_pred CcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 1223999999999999999999999999999999999999999999999975 58999999996 67888899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 299 ~G~i~e~g~~~~l~ 312 (329)
T PRK14257 299 QGWIEEAGETKTIF 312 (329)
T ss_pred CCEEEEeCCHHHHh
Confidence 99999999999875
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=323.69 Aligned_cols=221 Identities=19% Similarity=0.298 Sum_probs=182.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC---ceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC---IIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~---~~~G~I~~~ 92 (622)
.+++++|++++| |+.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ...|++.++
T Consensus 9 ~~i~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~ 76 (257)
T PRK14246 9 DVFNISRLYLYI--NDKAILKDITIKI-----PNNSIFGIMGPS-----GSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76 (257)
T ss_pred hheeeeeEEEec--CCceeEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCcCceeEcCEEEEC
Confidence 468899999996 7788999999999 677888888877 8999999999999998830 112555555
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
|+++.. ..++.++|++|++.+++.+||+||+.+....... ..+.+.++++.++++.+++.+ ..++.++.
T Consensus 77 g~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~- 153 (257)
T PRK14246 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGI--KEKREIKKIVEECLRKVGLWKEVYDRLNSPASQ- 153 (257)
T ss_pred CcccccCCHHHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHcCCCccchhhhcCCccc-
Confidence 565532 3577899999999999999999999987543211 123344567889999999964 34555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ ..+.+.||+++
T Consensus 154 -------LS~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tiilvsh~~-~~~~~~~d~v~ 223 (257)
T PRK14246 154 -------LSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKN--EIAIVIVSHNP-QQVARVADYVA 223 (257)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CcEEEEEECCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 58999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 224 ~l~~g~i~~~g~~~~~~ 240 (257)
T PRK14246 224 FLYNGELVEWGSSNEIF 240 (257)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988764
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=356.78 Aligned_cols=222 Identities=18% Similarity=0.295 Sum_probs=188.1
Q ss_pred CCcccCCccccccc---------cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 16 NNEEVPNVDFSEIV---------GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 16 ~~~~~~~~~~~~~~---------g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
.+++++||++.|.. ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+ .+
T Consensus 274 ~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLlk~l~Gl~~----~~ 339 (529)
T PRK15134 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL-----RPGETLGLVGES-----GSGKSTTGLALLRLIN----SQ 339 (529)
T ss_pred CcccccCcEEEeecCccccccccccceeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCcCC----CC
Confidence 36899999999842 2467999999999 677788888777 8999999999999984 38
Q ss_pred eEEEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cc
Q psy2519 87 GDIRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NS 156 (622)
Q Consensus 87 G~I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~ 156 (622)
|+|.++|+++.. .+++.+|||+|++ .+++.+||.||+.++...+.. ..+..+.+++++++++.+||. +.
T Consensus 340 G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~ 418 (529)
T PRK15134 340 GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQP-TLSAAQREQQVIAVMEEVGLDPET 418 (529)
T ss_pred cEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHcCCCHHH
Confidence 999999998743 1356799999986 488999999999987543211 112334456788999999997 46
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++.+.+ |||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++
T Consensus 419 ~~~~~~~--------LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~-~~~ 489 (529)
T PRK15134 419 RHRYPAE--------FSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDL-HVV 489 (529)
T ss_pred HhcCCcc--------CCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCH-HHH
Confidence 7888766 9999999999999999999999999999999999999999999999875589999999996 688
Q ss_pred HhhccceeeecCCceEEecChHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++||++++|++|+++..|+++++.
T Consensus 490 ~~~~d~i~~l~~G~i~~~~~~~~~~ 514 (529)
T PRK15134 490 RALCHQVIVLRQGEVVEQGDCERVF 514 (529)
T ss_pred HHhcCeEEEEECCEEEEEcCHHHHh
Confidence 8999999999999999999988764
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=326.40 Aligned_cols=219 Identities=19% Similarity=0.273 Sum_probs=179.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+ |....+|+|.++|+
T Consensus 24 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~I~G~n-----GsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~ 91 (271)
T PRK14238 24 VFDTQNLNLWY--GEDHALKNINLDI-----HENEVTAIIGPS-----GCGKSTYIKTLNRMVELVPSVKTTGKILYRDQ 91 (271)
T ss_pred EEEEeeeEEEE--CCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhccCCCCCCCceeEEECCE
Confidence 47899999986 5567999999999 677888888777 8999999999999987 21115899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC----CcccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL----MNSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL----~~~~~~~v~~~ 164 (622)
++.. .+++.+||++|++.+++. ||.||+.++...... .+.....+.+.++++.+++ .+..++.+++
T Consensus 92 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~- 167 (271)
T PRK14238 92 NIFDKSYSVEELRTNVGMVFQKPNPFPK-SIYDNVTYGPKIHGI--KDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYG- 167 (271)
T ss_pred EcccccccHHHHhhhEEEEecCCccccc-cHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHcCCcchHHHHHhcCccc-
Confidence 8742 356789999999888874 999999987543211 1122234456777777754 3334555444
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++||+++
T Consensus 168 -------LSgGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~--~~tiiivsH~~-~~i~~~~d~i~ 237 (271)
T PRK14238 168 -------LSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKK--DYSIIIVTHNM-QQAARISDKTA 237 (271)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHc--CCEEEEEEcCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999964 68999999996 67888999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 238 ~l~~G~i~~~g~~~~~~ 254 (271)
T PRK14238 238 FFLNGYVNEYDDTDKIF 254 (271)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999988763
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=355.99 Aligned_cols=219 Identities=22% Similarity=0.240 Sum_probs=186.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEEC---
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVN--- 92 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~--- 92 (622)
++++||+++| |+.++++++|+++ .+|+.+.|+|+| |||||||||+|+|+. +| .+|+|.++
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~~~p---~~G~i~~~~~~ 65 (520)
T TIGR03269 1 IEVKNLTKKF--DGKEVLKNISFTI-----EEGEVLGILGRS-----GAGKSVLMHVLRGMDQYEP---TSGRIIYHVAL 65 (520)
T ss_pred CEEEEEEEEE--CCeEeeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhcccCCC---CceEEEEeccc
Confidence 4688999987 6678999999999 677788888777 899999999999997 56 48999997
Q ss_pred --------------------CEecC----------c----cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccH
Q psy2519 93 --------------------GKPVE----------G----KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKA 137 (622)
Q Consensus 93 --------------------G~~~~----------~----~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~ 137 (622)
|.++. . ..++.+|||+|+ +.+++.+||+||+.+...... .+.
T Consensus 66 ~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~---~~~ 142 (520)
T TIGR03269 66 CEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIG---YEG 142 (520)
T ss_pred cccccccccccccccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcC---CCH
Confidence 32220 0 235679999997 678999999999998754332 233
Q ss_pred HHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 138 ~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
.+.+++++++++.+||.+..++.+++ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~~--------LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l 214 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIARD--------LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEA 214 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCccc--------CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHH
Confidence 44556789999999998888888776 9999999999999999999999999999999999999999999999
Q ss_pred HhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHH
Q psy2519 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 218 ~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~ 263 (622)
+++.|+|||++|||+ +.+.++||++++|++|++++.|+++++.+.
T Consensus 215 ~~~~g~tviivtHd~-~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 259 (520)
T TIGR03269 215 VKASGISMVLTSHWP-EVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259 (520)
T ss_pred HHhcCcEEEEEeCCH-HHHHHhcCEEEEEeCCEEeeecCHHHHHHH
Confidence 775699999999996 678889999999999999999999877654
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=355.11 Aligned_cols=216 Identities=20% Similarity=0.264 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~--~~~~il~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~i 68 (501)
T PRK11288 4 YLSFDGIGKTF--PGVKALDDISFDC-----RAGQVHALMGEN-----GAGKSTLLKILSGNYQP---DAGSILIDGQEM 68 (501)
T ss_pred eEEEeeeEEEE--CCEEEEeeeeEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECCEEC
Confidence 57899999987 5677999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
.. .+++.+|||+|++.+++.+||.||+.++............+.+++++++++.+||.+..++.+++
T Consensus 69 ~~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-------- 140 (501)
T PRK11288 69 RFASTTAALAAGVAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY-------- 140 (501)
T ss_pred CCCCHHHHHhCCEEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhh--------
Confidence 53 24678999999999999999999999864211101112334456788999999998777888776
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||++++|++|++
T Consensus 141 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiiiitHd~-~~~~~~~d~i~~l~~G~i 218 (501)
T PRK11288 141 LSIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRA-EGRVILYVSHRM-EEIFALCDAITVFKDGRY 218 (501)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 688899999999999999
Q ss_pred EEecCh
Q psy2519 252 AFIGSK 257 (622)
Q Consensus 252 v~~G~~ 257 (622)
+..++.
T Consensus 219 ~~~~~~ 224 (501)
T PRK11288 219 VATFDD 224 (501)
T ss_pred EeecCc
Confidence 877653
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-38 Score=355.07 Aligned_cols=219 Identities=21% Similarity=0.288 Sum_probs=185.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+|+ ..+|+|.++|+++.
T Consensus 2 l~i~~l~~~~--~~~~il~~isl~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~G~~~~~-~~~G~i~~~g~~~~ 68 (500)
T TIGR02633 2 LEMKGIVKTF--GGVKALDGIDLEV-----RPGECVGLCGEN-----GAGKSTLMKILSGVYPHG-TWDGEIYWSGSPLK 68 (500)
T ss_pred EEEEeEEEEe--CCeEeecceEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCCCC-CCCeEEEECCEECC
Confidence 5789999987 6678999999999 677788888777 899999999999999862 13899999999875
Q ss_pred c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCccc-CCccCCcCCCCcc
Q psy2519 98 G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKV 170 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~~~~~~~~ 170 (622)
. ..++.+|||+|++.+++.+||.||+.++....... ....++..++++++++.++|.+.. ++.+++
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~------- 141 (500)
T TIGR02633 69 ASNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGD------- 141 (500)
T ss_pred CCCHHHHHhCCEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhh-------
Confidence 4 13567999999999999999999998865432110 012233456788999999998764 466666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|+
T Consensus 142 -LSgG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviiitHd~-~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 142 -YGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA-HGVACVYISHKL-NEVKAVCDTICVIRDGQ 218 (500)
T ss_pred -CCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHHhCCEEEEEeCCe
Confidence 999999999999999999999999999999999999999999999986 699999999996 68889999999999999
Q ss_pred eEEecChHH
Q psy2519 251 TAFIGSKDA 259 (622)
Q Consensus 251 iv~~G~~~~ 259 (622)
++..|++++
T Consensus 219 i~~~~~~~~ 227 (500)
T TIGR02633 219 HVATKDMST 227 (500)
T ss_pred EeeecCccc
Confidence 999988764
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-38 Score=327.61 Aligned_cols=217 Identities=20% Similarity=0.280 Sum_probs=180.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| ||||||||++|+|+.+|.. ..+|+|.++|+
T Consensus 39 ~l~i~~l~~~~--~~~~il~~is~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~ 106 (285)
T PRK14254 39 VIEARDLNVFY--GDEQALDDVSMDI-----PENQVTAMIGPS-----GCGKSTFLRCINRMNDLIDAARVEGELTFRGK 106 (285)
T ss_pred eEEEEEEEEEE--CCEeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCcccCCCCceEEEECCE
Confidence 46789999986 5678999999999 677788888877 8999999999999986200 14899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCc
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSS 164 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~ 164 (622)
++.. ..++.++||+|++.+++. ||.||+.+...... ... +..++++++++.++|.+ ..++.+++
T Consensus 107 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~---~~~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~- 180 (285)
T PRK14254 107 NVYDADVDPVALRRRIGMVFQKPNPFPK-SIYDNVAYGLKIQG---YDG-DIDERVEESLRRAALWDEVKDQLDSSGLD- 180 (285)
T ss_pred EccccccchHhhhccEEEEecCCccCcC-CHHHHHHHHHHHcC---CcH-HHHHHHHHHHHHcCCCchhHHHHhCCccc-
Confidence 8742 356789999999888885 99999998755432 122 23456889999999853 45666555
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++++ + .|||++||++ +++.++|||++
T Consensus 181 -------LSgGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~-~-~tiii~tH~~-~~i~~~~dri~ 250 (285)
T PRK14254 181 -------LSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAE-E-YTVVIVTHNM-QQAARISDKTA 250 (285)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhc-C-CEEEEEeCCH-HHHHhhcCEEE
Confidence 999999999999999999999999999999999999999999999976 3 7999999996 68888999975
Q ss_pred -eecCCceEEecChHHHH
Q psy2519 245 -LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 -~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 251 v~l~~G~i~~~g~~~~~~ 268 (285)
T PRK14254 251 VFLTGGELVEFDDTDKIF 268 (285)
T ss_pred EEeeCCEEEEeCCHHHHH
Confidence 67999999999988653
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=325.18 Aligned_cols=218 Identities=20% Similarity=0.270 Sum_probs=180.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC--CCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID--DCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~--~~~~~G~I~~~G 93 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+..+ ....+|+|.++|
T Consensus 9 ~~l~i~~v~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g 76 (264)
T PRK14243 9 TVLRTENLNVYY--GSFLAVKNVWLDI-----PKNQITAFIGPS-----GCGKSTILRCFNRLNDLIPGFRVEGKVTFHG 76 (264)
T ss_pred eEEEEeeeEEEE--CCEEEeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhhcccCCCCCceEEEECC
Confidence 357899999986 6678999999999 678888888877 89999999999999763 101489999999
Q ss_pred EecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCC
Q psy2519 94 KPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGS 163 (622)
Q Consensus 94 ~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~ 163 (622)
+++.. ..++.+||++|++.+++. ||.||+.+...... .. .+..++++++++.+++.+ ..++.+.+
T Consensus 77 ~~i~~~~~~~~~~~~~i~~v~q~~~~~~~-tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 151 (264)
T PRK14243 77 KNLYAPDVDPVEVRRRIGMVFQKPNPFPK-SIYDNIAYGARING---YK-GDMDELVERSLRQAALWDEVKDKLKQSGLS 151 (264)
T ss_pred EEccccccChHHHhhhEEEEccCCccccc-cHHHHHHhhhhhcC---cc-hHHHHHHHHHHHHhCchhhHHHHhcCCccc
Confidence 98741 356789999999888874 99999988754321 11 123345677788888743 34555444
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.++|||+
T Consensus 152 --------LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tvi~vtH~~-~~~~~~~d~v 220 (264)
T PRK14243 152 --------LSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKE--QYTIIIVTHNM-QQAARVSDMT 220 (264)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCEEEEEecCH-HHHHHhCCEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 6899999999
Q ss_pred eeec---------CCceEEecChHHHH
Q psy2519 244 ILLA---------DSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~---------~G~iv~~G~~~~~~ 261 (622)
++|+ +|++++.|+++++.
T Consensus 221 ~~l~~~~~~~~~~~g~i~~~~~~~~~~ 247 (264)
T PRK14243 221 AFFNVELTEGGGRYGYLVEFDRTEKIF 247 (264)
T ss_pred EEEecccccccccCceEEEeCCHHHHH
Confidence 9998 89999999998774
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=335.02 Aligned_cols=183 Identities=22% Similarity=0.318 Sum_probs=163.8
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~ 141 (622)
|||||||||++|+|+.+| .+|+|.++|+++.. ..++.+||++|++.+++.+||+||+.|+.+.+. ..+.+.+
T Consensus 5 nGsGKSTLl~~iaGl~~p---~~G~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~ 78 (325)
T TIGR01187 5 SGCGKTTLLRLLAGFEQP---DSGSIMLDGEDVTNVPPHLRHINMVFQSYALFPHMTVEENVAFGLKMRK---VPRAEIK 78 (325)
T ss_pred CCCCHHHHHHHHHCCCCC---CceEEEECCEECCCCCHHHCCEEEEecCccccCCCcHHHHHHHHHhhcC---CCHHHHH
Confidence 489999999999999998 58999999998854 246789999999999999999999999865432 2334445
Q ss_pred HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC
Q psy2519 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR 221 (622)
Q Consensus 142 ~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~ 221 (622)
++++++++.++|.+..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.
T Consensus 79 ~~~~~~l~~~~l~~~~~~~~~~--------LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~ 150 (325)
T TIGR01187 79 PRVLEALRLVQLEEFADRKPHQ--------LSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL 150 (325)
T ss_pred HHHHHHHHHcCCcchhcCChhh--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc
Confidence 6789999999999888888766 99999999999999999999999999999999999999999999998756
Q ss_pred CCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 222 KKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 222 g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+|+|++||++ +++.++|||+++|++|+++..|+++++.
T Consensus 151 g~tiiivTHd~-~e~~~~~d~i~vl~~G~i~~~g~~~~~~ 189 (325)
T TIGR01187 151 GITFVFVTHDQ-EEAMTMSDRIAIMRKGKIAQIGTPEEIY 189 (325)
T ss_pred CCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999996 6888999999999999999999999875
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-38 Score=325.44 Aligned_cols=219 Identities=21% Similarity=0.294 Sum_probs=183.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
.++++||+++| ++.++++++|+++ ++|+.+.|+|+| |||||||+++|+|+.+|. ...+|+|.++|+
T Consensus 21 ~l~i~nl~~~~--~~~~il~~vs~~i-----~~Ge~~~I~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~ 88 (276)
T PRK14271 21 AMAAVNLTLGF--AGKTVLDQVSMGF-----PARAVTSLMGPT-----GSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGR 88 (276)
T ss_pred EEEEeeEEEEE--CCEEEeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhccCCcCCCCCCceEEEECCE
Confidence 46899999997 5678999999999 677788888776 899999999999999851 014899999999
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc----cCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS----QHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~----~~~~v~~~~ 165 (622)
++.. ..++.++|++|++.+++ .||+||+.+...... ..+..+.++++.++++.++|.+. .++.+++
T Consensus 89 ~i~~~~~~~~~~~~i~~v~q~~~l~~-~tv~eni~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~-- 163 (276)
T PRK14271 89 SIFNYRDVLEFRRRVGMLFQRPNPFP-MSIMDNVLAGVRAHK--LVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFR-- 163 (276)
T ss_pred EccccchhHHHhhheEEeccCCccCC-ccHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHcCCCchhhhHhhCCccc--
Confidence 8742 35778999999998888 799999988653321 11333444567788999999743 3455444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ ++|||++||++ +++.+++||+++
T Consensus 164 ------LSgGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiiivsH~~-~~~~~~~dri~~ 234 (276)
T PRK14271 164 ------LSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLAD--RLTVIIVTHNL-AQAARISDRAAL 234 (276)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999975 48999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+++..|+++++.
T Consensus 235 l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 235 FFDGRLVEEGPTEQLF 250 (276)
T ss_pred EECCEEEEeCCHHHHH
Confidence 9999999999998764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=319.26 Aligned_cols=210 Identities=21% Similarity=0.305 Sum_probs=176.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|++
T Consensus 6 ~~i~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~ 70 (225)
T PRK10247 6 PLLQLQNVGYLA--GDAKILNNISFSL-----RAGEFKLITGPS-----GCGKSTLLKIVASLISP---TSGTLLFEGED 70 (225)
T ss_pred ceEEEeccEEee--CCceeeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCeEEECCEE
Confidence 457899999986 5677999999999 677788888777 89999999999999988 59999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~ 170 (622)
+.. ..++.++|++|++.+++. ||+||+.+....+.. .. ..++++++++.+++. ...++.+.+
T Consensus 71 ~~~~~~~~~~~~i~~~~q~~~l~~~-tv~enl~~~~~~~~~---~~--~~~~~~~~l~~~~l~~~~~~~~~~~------- 137 (225)
T PRK10247 71 ISTLKPEIYRQQVSYCAQTPTLFGD-TVYDNLIFPWQIRNQ---QP--DPAIFLDDLERFALPDTILTKNIAE------- 137 (225)
T ss_pred cCcCCHHHHHhccEEEecccccccc-cHHHHHHhHHhhcCC---Ch--HHHHHHHHHHHcCCChHHhcCCccc-------
Confidence 753 256789999999888875 999999886543321 11 134577899999996 466777666
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DS 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G 249 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|||++||++ +++ +.||++++|+ ++
T Consensus 138 -LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~-~~~-~~~d~i~~l~~~~ 214 (225)
T PRK10247 138 -LSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDK-DEI-NHADKVITLQPHA 214 (225)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCh-HHH-HhCCEEEEEeccc
Confidence 9999999999999999999999999999999999999999999999875689999999996 566 4699999994 56
Q ss_pred ceEEecC
Q psy2519 250 RTAFIGS 256 (622)
Q Consensus 250 ~iv~~G~ 256 (622)
..+.+|.
T Consensus 215 ~~~~~~~ 221 (225)
T PRK10247 215 GEMQEAR 221 (225)
T ss_pred chHhhhh
Confidence 5555554
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=326.54 Aligned_cols=219 Identities=20% Similarity=0.311 Sum_probs=180.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|. ++.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~-~~~~il~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 71 (272)
T PRK15056 6 GIVVNDVTVTWR-NGHTALRDASFTV-----PGGSIAALVGVN-----GSGKSTLFKALMGFVRL---ASGKISILGQPT 71 (272)
T ss_pred eEEEEeEEEEec-CCcEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEh
Confidence 367899999873 3567999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cccc-cccEEEEecCCCCC--CCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EGKF-RSACGFMYQHDLFS--PSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~~~-r~~igyV~Q~~~l~--~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.... ++.++|++|++.+. ...+++|++.++...... ......+..++++++++.+||.+..++.+++ |
T Consensus 72 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------L 143 (272)
T PRK15056 72 RQALQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE--------L 143 (272)
T ss_pred HHhhccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCccc--------C
Confidence 5433 34699999997542 234789998754211000 0011122345678899999999888888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +|+|||++||++ +++.++||+++++ +|+++
T Consensus 144 SgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~-~g~tviivsH~~-~~~~~~~d~v~~~-~G~i~ 220 (272)
T PRK15056 144 SGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRD-EGKTMLVSTHNL-GSVTEFCDYTVMV-KGTVL 220 (272)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEE
Confidence 99999999999999999999999999999999999999999999987 699999999996 6888999999877 89999
Q ss_pred EecChHHH
Q psy2519 253 FIGSKDAA 260 (622)
Q Consensus 253 ~~G~~~~~ 260 (622)
+.|+++++
T Consensus 221 ~~g~~~~~ 228 (272)
T PRK15056 221 ASGPTETT 228 (272)
T ss_pred eecCHHhc
Confidence 99998865
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=324.42 Aligned_cols=228 Identities=20% Similarity=0.255 Sum_probs=185.2
Q ss_pred cccceEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--C
Q psy2519 6 STSKTVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--C 83 (622)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~ 83 (622)
|.|.|+---..+++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.++. .
T Consensus 9 ~~~~~~~~~~~~l~~~nl~~~~--~~~~~l~~vs~~i-----~~Ge~~~IiG~n-----GsGKSTLl~~l~Gl~~~~~~~ 76 (274)
T PRK14265 9 SDSATINPDHSVFEVEGVKVFY--GGFLALVDVHLKI-----PAKKIIAFIGPS-----GCGKSTLLRCFNRMNDLIPGA 76 (274)
T ss_pred ccccccCCCCceEEEeeEEEEe--CCeEEEeeeeeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccccccCC
Confidence 4444444444578899999986 5667999999999 678888888887 899999999999998631 1
Q ss_pred ceeeEEEECCEecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC---
Q psy2519 84 IIDGDIRVNGKPVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--- 154 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--- 154 (622)
..+|+|.++|+++.. .+++.++|++|++.+++. ||.||+.+....+. .. .+..+.+++.++.+++.
T Consensus 77 ~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~~nl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~l 151 (274)
T PRK14265 77 KVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPNPFPK-SIYENIAFAPRANG---YK-GNLDELVEDSLRRAAIWEEV 151 (274)
T ss_pred CcCceEEECCEecccccchhHHHhhcEEEEccCCccccc-cHHHHHHhHHHhcC---ch-HHHHHHHHHHHHHcccchhh
Confidence 148999999998742 356789999999888875 99999988754321 11 11234466778888874
Q ss_pred -cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 155 -NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 155 -~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+..++.+.+ |||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++
T Consensus 152 ~~~~~~~~~~--------LSgGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~--~~tiii~sH~~- 220 (274)
T PRK14265 152 KDKLKEKGTA--------LSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKE--QYTIIMVTHNM- 220 (274)
T ss_pred HHHhcCCccc--------CCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-
Confidence 334555444 999999999999999999999999999999999999999999999964 58999999996
Q ss_pred HHHHhhccceeeec---------CCceEEecChHHHH
Q psy2519 234 SELIDMFDKIILLA---------DSRTAFIGSKDAAL 261 (622)
Q Consensus 234 ~~i~~~~D~v~~L~---------~G~iv~~G~~~~~~ 261 (622)
+++.++|||+++|+ +|++++.|+++++.
T Consensus 221 ~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~ 257 (274)
T PRK14265 221 QQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMF 257 (274)
T ss_pred HHHHHhCCEEEEEecccccccccCceEEEeCCHHHHH
Confidence 68889999999997 89999999999774
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=353.98 Aligned_cols=220 Identities=21% Similarity=0.258 Sum_probs=186.1
Q ss_pred CcccCCccccccc---cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC-
Q psy2519 17 NEEVPNVDFSEIV---GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN- 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~- 92 (622)
+++++||++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~ 345 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEV-----KEGEIFGIVGTS-----GAGKTTLSKIIAGVLEP---TSGEVNVRV 345 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEEec
Confidence 5889999999742 3457999999999 677788888887 89999999999999998 58999996
Q ss_pred CEe---cCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-----cc
Q psy2519 93 GKP---VEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQ 157 (622)
Q Consensus 93 G~~---~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~ 157 (622)
|.+ +.. ..++.+|||+|++.+++.+||.||+.+...... +..+.+++++++++.+||.+ ..
T Consensus 346 g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~----~~~~~~~~~~~~l~~~~l~~~~~~~~~ 421 (520)
T TIGR03269 346 GDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLEL----PDELARMKAVITLKMVGFDEEKAEEIL 421 (520)
T ss_pred CCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCC----CHHHHHHHHHHHHHhCCCCCccchhhh
Confidence 642 211 235679999999889999999999988643321 22333467889999999975 45
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++.+ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ +++.
T Consensus 422 ~~~~~~--------LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~ 492 (520)
T TIGR03269 422 DKYPDE--------LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDM-DFVL 492 (520)
T ss_pred hCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCH-HHHH
Confidence 777666 9999999999999999999999999999999999999999999999875699999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
++|||+++|++|+++..|+++++.+
T Consensus 493 ~~~d~i~~l~~G~i~~~g~~~~~~~ 517 (520)
T TIGR03269 493 DVCDRAALMRDGKIVKIGDPEEIVE 517 (520)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999887653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=322.05 Aligned_cols=216 Identities=22% Similarity=0.293 Sum_probs=170.9
Q ss_pred cccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++++|+++.|..+ +.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~ 67 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTI-----PPGKTVALVGSS-----GCGKSTVVSLLERFYDP---TSGEILLDGVDI 67 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEe-----cCCCEEEEEeCC-----CCCHHHHHHHHhccCCC---CCCEEEECCEeh
Confidence 3578999987432 256899999999 678888888887 89999999999999998 599999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHH-HH--HHHHHHHHHh--CCCcccCCccCCcCCC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ-RI--ALINSLLIEL--GLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~-~~--~~v~~~l~~l--gL~~~~~~~v~~~~~~ 167 (622)
.. ..++.++|++|++.+++ .||+||+.+...... ..... .. ..+.+.++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---- 139 (238)
T cd03249 68 RDLNLRWLRSQIGLVSQEPVLFD-GTIAENIRYGKPDAT---DEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQ---- 139 (238)
T ss_pred hhcCHHHHHhhEEEECCchhhhh-hhHHHHhhccCCCCC---HHHHHHHHHHcChHHHHHhhccccceeeccCCcc----
Confidence 53 24577999999988876 699999987532211 01100 00 0123333444 444444555444
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+||++|+.+|++|+|||||+|||+.++.++.+.|++++ +|+|||++||++ +++. .||++++|+
T Consensus 140 ----LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~--~g~~vi~~sh~~-~~~~-~~d~v~~l~ 211 (238)
T cd03249 140 ----LSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAM--KGRTTIVIAHRL-STIR-NADLIAVLQ 211 (238)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHh-hCCEEEEEE
Confidence 99999999999999999999999999999999999999999999996 589999999996 5665 899999999
Q ss_pred CCceEEecChHHHHH
Q psy2519 248 DSRTAFIGSKDAALA 262 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~ 262 (622)
+|++++.|+.+++.+
T Consensus 212 ~G~i~~~~~~~~~~~ 226 (238)
T cd03249 212 NGQVVEQGTHDELMA 226 (238)
T ss_pred CCEEEEeCCHHHHhh
Confidence 999999999877653
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-38 Score=354.59 Aligned_cols=224 Identities=22% Similarity=0.283 Sum_probs=187.4
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~ 92 (622)
+++++||+++|..+ ..++++++|+++ .+|+.++++|+| |||||||||+|+|+++|. ...+|+|.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~i~G~~~~~~~~~~~G~i~~~ 74 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQI-----EAGETLALVGES-----GSGKSVTALSILRLLPSPPVVYPSGDIRFH 74 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhcCCCCCcCCccceEEEEC
Confidence 57899999998432 357999999999 677888888777 899999999999999862 1148999999
Q ss_pred CEecCc----c---c-cccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc---ccCC
Q psy2519 93 GKPVEG----K---F-RSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN---SQHT 159 (622)
Q Consensus 93 G~~~~~----~---~-r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~---~~~~ 159 (622)
|+++.. . . ++.+|||+|++. +.+.+||+|++.+...... ..+..+..++++++++.+||.+ ..++
T Consensus 75 g~~i~~~~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 75 GESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHR--GMRREAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred CEecccCCHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHCCCCChHHHHhh
Confidence 998743 1 2 257999999864 6788999999987543221 1233445677899999999976 3577
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~ 239 (622)
++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|+|||++||++ +.+.++
T Consensus 153 ~~~~--------LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~ 223 (529)
T PRK15134 153 YPHQ--------LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNL-SIVRKL 223 (529)
T ss_pred CCcc--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcH-HHHHHh
Confidence 7666 9999999999999999999999999999999999999999999999875589999999996 678889
Q ss_pred ccceeeecCCceEEecChHHHH
Q psy2519 240 FDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
||||++|++|++++.|+++++.
T Consensus 224 ~dri~~l~~G~i~~~g~~~~~~ 245 (529)
T PRK15134 224 ADRVAVMQNGRCVEQNRAATLF 245 (529)
T ss_pred cCEEEEEECCEEEEeCCHHHHh
Confidence 9999999999999999988764
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-38 Score=312.70 Aligned_cols=199 Identities=19% Similarity=0.244 Sum_probs=172.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 1 ~l~~~~l~~~~--~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~p---~~G~v~~~g~~~ 65 (204)
T PRK13538 1 MLEARNLACER--DERILFSGLSFTL-----NAGELVQIEGPN-----GAGKTSLLRILAGLARP---DAGEVLWQGEPI 65 (204)
T ss_pred CeEEEEEEEEE--CCEEEEecceEEE-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEc
Confidence 36789999986 5677999999999 678888888887 89999999999999998 589999999987
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.. ..++.++|++|++.+++.+||.||+.+...... . +..++++++++.+||.+..++.+.+ ||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~~tv~e~l~~~~~~~~---~---~~~~~~~~~l~~~gl~~~~~~~~~~--------LS 131 (204)
T PRK13538 66 RRQRDEYHQDLLYLGHQPGIKTELTALENLRFYQRLHG---P---GDDEALWEALAQVGLAGFEDVPVRQ--------LS 131 (204)
T ss_pred ccchHHhhhheEEeCCccccCcCCcHHHHHHHHHHhcC---c---cHHHHHHHHHHHcCCHHHhhCChhh--------cC
Confidence 53 356789999999999999999999998764432 0 1235678999999998878887766 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||++||+||+.+|++++|||||+|||+.++..+.+.|+++++ +|.|||++||++ +.+.+..+|++++
T Consensus 132 ~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i~~~~~~~~~~ 202 (204)
T PRK13538 132 AGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAE-QGGMVILTTHQD-LPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCh-hhhccCCceEEec
Confidence 9999999999999999999999999999999999999999999986 689999999996 5776666777766
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=320.03 Aligned_cols=218 Identities=24% Similarity=0.331 Sum_probs=169.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~~-~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 67 (229)
T cd03254 2 EIEFENVNFSYD-EKKPVLKDINFSI-----KPGETVAIVGPT-----GAGKTTLINLLMRFYDP---QKGQILIDGIDI 67 (229)
T ss_pred eEEEEEEEEecC-CCCccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCEeH
Confidence 357899999873 2356999999999 677777888776 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.++|++|++.+++. ||.||+.+...................++.++.+ ++....++.+.+
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~-tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~------- 139 (229)
T cd03254 68 RDISRKSLRSMIGVVLQDTFLFSG-TIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN------- 139 (229)
T ss_pred HHcCHHHHhhhEEEecCCchhhhh-HHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc-------
Confidence 53 357789999999888876 9999998753211000000000001122333333 344444444444
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|++++ +|+|||++||++ +++. .||++++|++|+
T Consensus 140 -LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~~-~~d~i~~l~~g~ 214 (229)
T cd03254 140 -LSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLM--KGRTSIIIAHRL-STIK-NADKILVLDDGK 214 (229)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HHHh-hCCEEEEEeCCe
Confidence 99999999999999999999999999999999999999999999995 389999999997 4664 699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+.+++.
T Consensus 215 ~~~~~~~~~~~ 225 (229)
T cd03254 215 IIEEGTHDELL 225 (229)
T ss_pred EEEeCCHHHHH
Confidence 99999887654
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-38 Score=312.26 Aligned_cols=201 Identities=21% Similarity=0.260 Sum_probs=175.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~i 75 (214)
T PRK13543 11 LLAAHALAFSR--NEEPVFGPLDFHV-----DAGEALLVQGDN-----GAGKTTLLRVLAGLLHV---ESGQIQIDGKTA 75 (214)
T ss_pred eEEEeeEEEec--CCceeeecceEEE-----CCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CCeeEEECCEEc
Confidence 46789999986 5667999999999 677888888887 89999999999999998 489999999988
Q ss_pred Cc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. ..++.++|++|++.+++.+|+.||+.+....+. .. ..++++++++.++|.+..++.+.+ ||||
T Consensus 76 ~~~~~~~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~---~~---~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 141 (214)
T PRK13543 76 TRGDRSRFMAYLGHLPGLKADLSTLENLHFLCGLHG---RR---AKQMPGSALAIVGLAGYEDTLVRQ--------LSAG 141 (214)
T ss_pred cchhhhhceEEeecCcccccCCcHHHHHHHHHHhcC---Cc---HHHHHHHHHHHcCChhhccCChhh--------CCHH
Confidence 64 345679999999999999999999988754432 11 234567889999998888888776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||++|||+++.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.++||++++++.
T Consensus 142 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 142 QKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLR-GGGAALVTTHGA-YAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEecCh-hhhhhhcceEEEEee
Confidence 99999999999999999999999999999999999999999987 689999999996 689999999999864
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-38 Score=353.48 Aligned_cols=222 Identities=18% Similarity=0.259 Sum_probs=186.0
Q ss_pred CcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+|. .+|+|.++|++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~~~--~~G~i~~~g~~ 326 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSL-----RRGEILGIAGLV-----GAGRTELVQCLFGAYPGR--WEGEIFIDGKP 326 (506)
T ss_pred eEEEecCccccccccccccccceeeEE-----cCCcEEEEeCCC-----CCCHHHHHHHHhCCCCCC--CCcEEEECCEE
Confidence 5789999998743 3467999999999 677788888877 899999999999999831 48999999998
Q ss_pred cCc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHH--cCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 96 VEG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
++. ..++.+|||+|++ .+++.+||.||+.+... ..........+.+++++++++.++|. +..++++++
T Consensus 327 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 405 (506)
T PRK13549 327 VKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIAR- 405 (506)
T ss_pred CCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCccccccc-
Confidence 753 2356799999985 47889999999987632 11100012233446788999999996 577888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.++|+++++ +|+|||++|||+ +++.++|||++
T Consensus 406 -------LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~~sHd~-~~~~~~~d~v~ 476 (506)
T PRK13549 406 -------LSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQ-QGVAIIVISSEL-PEVLGLSDRVL 476 (506)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68899999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|+++..|+++++
T Consensus 477 ~l~~G~i~~~~~~~~~ 492 (506)
T PRK13549 477 VMHEGKLKGDLINHNL 492 (506)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999987654
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-38 Score=361.19 Aligned_cols=212 Identities=20% Similarity=0.294 Sum_probs=176.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|.|+ ++.++|+++|+++ ++|+.++++|++ |||||||+++|+|+. | .+|+|.+||.++
T Consensus 349 ~i~~~~vsf~~~-~~~~vL~~i~l~i-----~~G~~vaIvG~S-----GsGKSTL~~lL~g~~-p---~~G~I~i~g~~i 413 (588)
T PRK11174 349 TIEAEDLEILSP-DGKTLAGPLNFTL-----PAGQRIALVGPS-----GAGKTSLLNALLGFL-P---YQGSLKINGIEL 413 (588)
T ss_pred eEEEEeeEEecc-CCCeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCC-C---CCcEEEECCEec
Confidence 588999998763 4567999999999 788888888775 899999999999999 7 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~~ 165 (622)
.+ .+|+.+|||+|++.+|+. |++|||.++.. ..+++ +++++++..++ ++..|+.+|+
T Consensus 414 ~~~~~~~lr~~i~~v~Q~~~LF~~-TI~eNI~~g~~-----~~~~e----ei~~al~~a~l~~~i~~lp~G~dT~vge-- 481 (588)
T PRK11174 414 RELDPESWRKHLSWVGQNPQLPHG-TLRDNVLLGNP-----DASDE----QLQQALENAWVSEFLPLLPQGLDTPIGD-- 481 (588)
T ss_pred ccCCHHHHHhheEEecCCCcCCCc-CHHHHhhcCCC-----CCCHH----HHHHHHHHhCHHHHHHhccccccccccc--
Confidence 65 478999999999998876 99999998631 11222 23334444333 3456777776
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....||||||||++|||||+.+|++|+||||||+||+.+..++.+.|+++. .++|+|++||++ ...+.||+|++
T Consensus 482 --~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~--~~~TvIiItHrl--~~i~~aD~Iiv 555 (588)
T PRK11174 482 --QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAAS--RRQTTLMVTHQL--EDLAQWDQIWV 555 (588)
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEecCh--HHHHhCCEEEE
Confidence 234599999999999999999999999999999999999999999999986 479999999997 34567999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 556 l~~G~i~e~G~~~eL~ 571 (588)
T PRK11174 556 MQDGQIVQQGDYAELS 571 (588)
T ss_pred EeCCeEeecCCHHHHH
Confidence 9999999999998875
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=301.13 Aligned_cols=219 Identities=22% Similarity=0.286 Sum_probs=189.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++.+||+++. .++.++++|++.+ .+|+...|+||| |||||||||.|+|.+.| .+|++.+||.++
T Consensus 1 mi~a~nls~~~--~Gr~ll~~vsl~~-----~pGev~ailGPN-----GAGKSTlLk~LsGel~p---~~G~v~~~g~~l 65 (259)
T COG4559 1 MIRAENLSYSL--AGRRLLDGVSLDL-----RPGEVLAILGPN-----GAGKSTLLKALSGELSP---DSGEVTLNGVPL 65 (259)
T ss_pred CeeeeeeEEEe--ecceeccCcceec-----cCCcEEEEECCC-----CccHHHHHHHhhCccCC---CCCeEeeCCcCh
Confidence 46788999884 6678999999999 788888999888 79999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+. ++.++-+.++|+..+-...||.|-+.++..-..... ...+..+.+++.++..++.+.+.+.... |
T Consensus 66 ~~~~~~~lA~~raVlpQ~s~laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~la~R~y~~--------L 136 (259)
T COG4559 66 NSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGLAGRDYRT--------L 136 (259)
T ss_pred hhCCHHHHHHHhhhcccCcccccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhhhccchhh--------c
Confidence 65 456778999999888777899999999864432111 2234455678999999999988887766 9
Q ss_pred ChHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||.+||.|+. ++++||||||||.||...+..++++.+++++ +|..|+++.||. +....+||||++|
T Consensus 137 SGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~-~g~~V~~VLHDL-NLAA~YaDrivll 214 (259)
T COG4559 137 SGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAR-EGGAVLAVLHDL-NLAAQYADRIVLL 214 (259)
T ss_pred CchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHh-cCCcEEEEEccc-hHHHHhhheeeee
Confidence 9999999999999985 3459999999999999999999999999999 689999999997 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++||++..|+|++++
T Consensus 215 ~~Grv~a~g~p~~vl 229 (259)
T COG4559 215 HQGRVIASGSPQDVL 229 (259)
T ss_pred eCCeEeecCCHHHhc
Confidence 999999999999875
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=316.85 Aligned_cols=224 Identities=17% Similarity=0.164 Sum_probs=179.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+. +| .+|+|.++|+
T Consensus 1 ~i~~~nl~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~---~~G~i~~~g~ 65 (248)
T PRK09580 1 MLSIKDLHVSV--EDKAILRGLNLEV-----RPGEVHAIMGPN-----GSGKSTLSATLAGREDYEV---TGGTVEFKGK 65 (248)
T ss_pred CeEEEEEEEEe--CCeeeeecceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCccCCC---CceEEEECCC
Confidence 36789999987 4567999999999 677888888877 899999999999995 46 5899999998
Q ss_pred ecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHH-cCC--C-ccccHHHHHHHHHHHHHHhCCC-cccCCccC-C
Q psy2519 95 PVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMAL-LKL--D-RRVKAYQRIALINSLLIELGLM-NSQHTRIG-S 163 (622)
Q Consensus 95 ~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~~--~-~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~-~ 163 (622)
++.. . .++.++|++|++.+++.+|+.+++.+... ... . ......+..+++++.++.+++. +..++.+. +
T Consensus 66 ~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (248)
T PRK09580 66 DLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVG 145 (248)
T ss_pred ccccCCHHHHhhcceEEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCC
Confidence 8753 1 23579999999999998888877654321 110 0 0011223345678899999995 44555543 3
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccc
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDK 242 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~ 242 (622)
|||||||||+|||||+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|||++||++ +.+... +|+
T Consensus 146 --------LS~G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~-~~~tiii~sH~~-~~~~~~~~d~ 215 (248)
T PRK09580 146 --------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRD-GKRSFIIVTHYQ-RILDYIKPDY 215 (248)
T ss_pred --------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHhhhCCE
Confidence 999999999999999999999999999999999999999999999986 689999999996 567666 899
Q ss_pred eeeecCCceEEecChHHHHHHHHh
Q psy2519 243 IILLADSRTAFIGSKDAALAFLES 266 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~~~~~ 266 (622)
+++|++|++++.|+++.+ +.++.
T Consensus 216 i~~l~~g~i~~~g~~~~~-~~~~~ 238 (248)
T PRK09580 216 VHVLYQGRIVKSGDFTLV-KQLEE 238 (248)
T ss_pred EEEEECCeEEEeCCHHHH-HHHHh
Confidence 999999999999998855 34443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-38 Score=339.71 Aligned_cols=216 Identities=24% Similarity=0.291 Sum_probs=194.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++|+| |.+++|++|||++ .+|+...++|.| |||||||+|+|+|..+| ++|+|.++|++.
T Consensus 8 ll~~~~i~K~F--ggV~AL~~v~l~v-----~~GEV~aL~GeN-----GAGKSTLmKiLsGv~~p---~~G~I~~~G~~~ 72 (500)
T COG1129 8 LLELRGISKSF--GGVKALDGVSLTV-----RPGEVHALLGEN-----GAGKSTLMKILSGVYPP---DSGEILIDGKPV 72 (500)
T ss_pred eeeeecceEEc--CCceeeccceeEE-----eCceEEEEecCC-----CCCHHHHHHHHhCcccC---CCceEEECCEEc
Confidence 46799999995 9999999999999 688888888888 79999999999999999 599999999998
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. .....|+.|+|+..|.|+|||.||+.++..... ...++.++.++++.++|+.+|+....++++++
T Consensus 73 ~~~sp~~A~~~GI~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~------- 145 (500)
T COG1129 73 AFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGD------- 145 (500)
T ss_pred cCCCHHHHHhCCcEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhh-------
Confidence 53 257889999999999999999999988765433 22356667788899999999996558888888
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||.||||.|+|||||..++++|+|||||+.|+...+..++++++++++ +|.+||++||.+ +|++++|||+.+|+||+
T Consensus 146 -LsiaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~-~Gv~ii~ISHrl-~Ei~~i~DritVlRDG~ 222 (500)
T COG1129 146 -LSIAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKA-QGVAIIYISHRL-DEVFEIADRITVLRDGR 222 (500)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCcH-HHHHHhcCEEEEEeCCE
Confidence 999999999999999999999999999999999999999999999997 799999999996 79999999999999999
Q ss_pred eEEecCh
Q psy2519 251 TAFIGSK 257 (622)
Q Consensus 251 iv~~G~~ 257 (622)
.+..++.
T Consensus 223 ~v~~~~~ 229 (500)
T COG1129 223 VVGTRPT 229 (500)
T ss_pred Eeeeccc
Confidence 9998883
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-38 Score=307.70 Aligned_cols=185 Identities=37% Similarity=0.645 Sum_probs=162.5
Q ss_pred CcccCCcccccccc----ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEE
Q psy2519 17 NEEVPNVDFSEIVG----SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIR 90 (622)
Q Consensus 17 ~~~~~~~~~~~~~g----~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~ 90 (622)
.++++||++.|..+ +.++++++|+++ .+|+.+.++|+| |||||||+++|+|+. +| .+|+|.
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i-----~~Ge~~~l~G~n-----GsGKStLl~~i~Gl~~~~~---~~G~i~ 69 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKA-----KPGELTAIMGPS-----GAGKSTLLNALAGRRTGLG---VSGEVL 69 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CceEEE
Confidence 36789999998432 367999999999 677888888777 899999999999999 87 589999
Q ss_pred ECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 91 VNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 91 ~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
++|+++.. ..++.++|++|++.+++.+|++||+.+..... +
T Consensus 70 ~~g~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~~~--------------------------------~------ 111 (194)
T cd03213 70 INGRPLDKRSFRKIIGYVPQDDILHPTLTVRETLMFAAKLR--------------------------------G------ 111 (194)
T ss_pred ECCEeCchHhhhheEEEccCcccCCCCCcHHHHHHHHHHhc--------------------------------c------
Confidence 99999865 46778999999999999999999997653110 4
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||||||++|||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|+|++||++..++.+.||++++|++|
T Consensus 112 --LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~~~~~~~~~d~v~~l~~G 188 (194)
T cd03213 112 --LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLAD-TGRTIICSIHQPSSEIFELFDKLLLLSQG 188 (194)
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCchHHHHHhcCEEEEEeCC
Confidence 999999999999999999999999999999999999999999999986 59999999999744688899999999999
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 189 ~i~~~~ 194 (194)
T cd03213 189 RVIYFG 194 (194)
T ss_pred EEEecC
Confidence 998764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=318.60 Aligned_cols=216 Identities=19% Similarity=0.227 Sum_probs=179.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~~ 95 (622)
+.++++++.| |+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+|.. ..+|+|.++|++
T Consensus 9 ~~~~~~~~~~--~~~~~l~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~ 76 (261)
T PRK14263 9 MDCKLDKIFY--GNFMAVRDSHVPI-----RKNEITGFIGPS-----GCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQD 76 (261)
T ss_pred EEEEeEEEEe--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcccccccCCCCceEEEECCEe
Confidence 4567777775 7778999999999 678888888887 8999999999999997610 148999999998
Q ss_pred cCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc----CCccCCcC
Q psy2519 96 VEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ----HTRIGSSS 165 (622)
Q Consensus 96 ~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~----~~~v~~~~ 165 (622)
+.. ..++.++|++|++.++ .+|+.||+.+....+. .. .+..++++++++.++|.+.. ++.+++
T Consensus 77 i~~~~~~~~~~~~~i~~v~q~~~~~-~~tv~enl~~~~~~~~---~~-~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~-- 149 (261)
T PRK14263 77 VYGKGVDPVVVRRYIGMVFQQPNPF-SMSIFDNVAFGLRLNR---YK-GDLGDRVKHALQGAALWDEVKDKLKVSGLS-- 149 (261)
T ss_pred ccccccchHhhhhceEEEecCCccc-cccHHHHHHHHHhhcC---ch-HHHHHHHHHHHHHcCCchhhhhhhhCCccc--
Confidence 742 2467899999998877 5999999998765432 11 22345788999999986432 333333
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++++ ++|+|++||++ +++.++|||+++
T Consensus 150 ------LS~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~--~~tii~isH~~-~~i~~~~d~v~~ 220 (261)
T PRK14263 150 ------LSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKK--DYTIALVTHNM-QQAIRVADTTAF 220 (261)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEeCCH-HHHHHhCCEEEE
Confidence 999999999999999999999999999999999999999999999953 68999999996 678899999999
Q ss_pred ec--------CCceEEecChHHHH
Q psy2519 246 LA--------DSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~--------~G~iv~~G~~~~~~ 261 (622)
|+ +|+++..|+++++.
T Consensus 221 l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 221 FSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred EecccccccCCceEEEeCCHHHHH
Confidence 95 89999999988764
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-38 Score=306.85 Aligned_cols=187 Identities=33% Similarity=0.588 Sum_probs=161.9
Q ss_pred cCCcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEE
Q psy2519 15 KNNEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIR 90 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~ 90 (622)
|..++++|+++.|..+ +.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.. | .+|+|.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~~~~l~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~~~---~~G~i~ 67 (192)
T cd03232 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYV-----KPGTLTALMGES-----GAGKTTLLDVLAGRKTAGV---ITGEIL 67 (192)
T ss_pred CcEEEEeeeEEEecCCCCceEeEEccEEEE-----eCCcEEEEECCC-----CCCHHHHHHHHhCCCcCCC---cceEEE
Confidence 3456899999998432 267999999999 577788888776 8999999999999864 4 589999
Q ss_pred ECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 91 VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 91 ~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
++|+++....++.++|++|++.+++.+||+||+.+.... + +
T Consensus 68 ~~g~~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~-------------------~-------------~------- 108 (192)
T cd03232 68 INGRPLDKNFQRSTGYVEQQDVHSPNLTVREALRFSALL-------------------R-------------G------- 108 (192)
T ss_pred ECCEehHHHhhhceEEecccCccccCCcHHHHHHHHHHH-------------------h-------------c-------
Confidence 999988655677899999999999999999999875311 0 4
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-C
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-S 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G 249 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|+|+|++||++..++.+.||++++|++ |
T Consensus 109 -LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiiivtH~~~~~~~~~~d~i~~l~~~g 186 (192)
T cd03232 109 -LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLAD-SGQAILCTIHQPSASIFEKFDRLLLLKRGG 186 (192)
T ss_pred -CCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHH-cCCEEEEEEcCChHHHHhhCCEEEEEcCCC
Confidence 999999999999999999999999999999999999999999999986 6899999999973246789999999998 9
Q ss_pred ceEEec
Q psy2519 250 RTAFIG 255 (622)
Q Consensus 250 ~iv~~G 255 (622)
++++.|
T Consensus 187 ~i~~~g 192 (192)
T cd03232 187 KTVYFG 192 (192)
T ss_pred eEEeCC
Confidence 999865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-37 Score=317.70 Aligned_cols=218 Identities=19% Similarity=0.263 Sum_probs=180.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC--CCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI--DDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~--~~~~~~G~I~~~G~~ 95 (622)
++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.. |....+|+|.++|++
T Consensus 4 l~~~~v~~~~--~~~~~l~~~s~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~ 71 (250)
T PRK14266 4 IEVENLNTYF--DDAHILKNVNLDI-----PKNSVTALIGPS-----GCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVD 71 (250)
T ss_pred EEEEeEEEEe--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhhhccCCCCCCccEEEECCEE
Confidence 5689999986 5677999999999 677788888777 8999999999999864 211148999999998
Q ss_pred cCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc----ccCCccCCcC
Q psy2519 96 VEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN----SQHTRIGSSS 165 (622)
Q Consensus 96 ~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~----~~~~~v~~~~ 165 (622)
+.. ..++.++|++|++.+++. |+.||+.+....... ...+..++++.++++.+++.+ ..++.+++
T Consensus 72 i~~~~~~~~~~~~~i~~~~q~~~~~~~-t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~-- 146 (250)
T PRK14266 72 IYDPAVDVVELRKKVGMVFQKPNPFPK-SIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSALG-- 146 (250)
T ss_pred cccccccHHHHhhheEEEecCCccCcc-hHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCccc--
Confidence 742 356789999999988885 999999886543211 122334567888999999853 33555444
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||++ .++.+.+|++++
T Consensus 147 ------LS~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~~~~~~i~~ 217 (250)
T PRK14266 147 ------LSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKE--DYTIVIVTHNM-QQATRVSKYTSF 217 (250)
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhc--CCeEEEEECCH-HHHHhhcCEEEE
Confidence 999999999999999999999999999999999999999999999953 78999999996 688899999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 218 l~~G~i~~~g~~~~~~ 233 (250)
T PRK14266 218 FLNGEIIESGLTDQIF 233 (250)
T ss_pred EECCeEEEeCCHHHHH
Confidence 9999999999988764
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-37 Score=355.21 Aligned_cols=227 Identities=23% Similarity=0.336 Sum_probs=183.5
Q ss_pred EeecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 12 ILFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
-..+..+|++||.|+|+.. ++++|+++|+.+ .+|+.+.++|+ |||||||++++|.++..| .+|+|+
T Consensus 345 ~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i-----~~G~~valVG~-----SGsGKST~i~LL~RfydP---~~G~V~ 411 (1228)
T KOG0055|consen 345 SSIKGEIEFRNVCFSYPSRPDVKILKGVSLKI-----PSGQTVALVGP-----SGSGKSTLIQLLARFYDP---TSGEVL 411 (1228)
T ss_pred cccccceEEEEEEecCCCCCcchhhCCeEEEe-----CCCCEEEEECC-----CCCCHHHHHHHHHHhcCC---CCceEE
Confidence 3456889999999999765 478999999999 56666666655 489999999999999999 599999
Q ss_pred ECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 91 VNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 91 ~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+||.|+.. .+|.+||.|+|+|.||. .|++||+.|+..-.......+..+.+.+.+.+. .|.+..++.+|+.
T Consensus 412 idG~di~~~~~~~lr~~iglV~QePvlF~-~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~--~lp~g~~T~vge~-- 486 (1228)
T KOG0055|consen 412 IDGEDIRNLNLKWLRSQIGLVSQEPVLFA-TTIRENIRYGKPDATREEIEEAAKAANAHDFIL--KLPDGYDTLVGER-- 486 (1228)
T ss_pred EcCccchhcchHHHHhhcCeeeechhhhc-ccHHHHHhcCCCcccHHHHHHHHHHccHHHHHH--hhHHhhcccccCC--
Confidence 99999875 47999999999997775 599999999742211011111111122233333 4566788998872
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
...||||||||++|||||+.+|+|||||||||+||+.+...+.+.|.+.. .|+|.|+++|+. +.+.. +|+|++|
T Consensus 487 --g~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~--~grTTivVaHRL-StIrn-aD~I~v~ 560 (1228)
T KOG0055|consen 487 --GVQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKAS--KGRTTIVVAHRL-STIRN-ADKIAVM 560 (1228)
T ss_pred --CCCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhh--cCCeEEEEeeeh-hhhhc-cCEEEEE
Confidence 12399999999999999999999999999999999999999999999986 489999999997 56755 9999999
Q ss_pred cCCceEEecChHHHHH
Q psy2519 247 ADSRTAFIGSKDAALA 262 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~~ 262 (622)
++|+|++.|+++|++.
T Consensus 561 ~~G~IvE~G~h~ELi~ 576 (1228)
T KOG0055|consen 561 EEGKIVEQGTHDELIA 576 (1228)
T ss_pred ECCEEEEecCHHHHHh
Confidence 9999999999999874
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=366.37 Aligned_cols=214 Identities=25% Similarity=0.302 Sum_probs=180.7
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+.++++||+|+|+.++.++|+++|+++ ++|++++++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 448 ~~~~I~~~nvsf~Y~~~~~~vL~~isl~i-----~~Ge~vaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg 514 (686)
T TIGR03797 448 LSGAIEVDRVTFRYRPDGPLILDDVSLQI-----EPGEFVAIVGPS-----GSGKSTLLRLLLGFETP---ESGSVFYDG 514 (686)
T ss_pred CCceEEEEEEEEEcCCCCccceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCEEEECC
Confidence 34568999999998645578999999999 788888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~ 162 (622)
+++.. .+|+.+|||+|++.+++. |++|||.++.. .+. +++.++++..|+.+ ..|+.++
T Consensus 515 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~~~~~------~~~----e~i~~al~~a~l~~~i~~lp~G~dt~ig 583 (686)
T TIGR03797 515 QDLAGLDVQAVRRQLGVVLQNGRLMSG-SIFENIAGGAP------LTL----DEAWEAARMAGLAEDIRAMPMGMHTVIS 583 (686)
T ss_pred EEcCcCCHHHHHhccEEEccCCccCcc-cHHHHHhcCCC------CCH----HHHHHHHHHcCcHHHHHhcccccccccc
Confidence 99875 479999999999998876 99999988632 122 23455666666543 4466676
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ....||||||||++|||||+.+|++|+||||||+||+.+.+++.+.|+++ ++|+|++||++ +..+.+|+
T Consensus 584 e----~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~----~~T~IiItHr~--~~i~~~D~ 653 (686)
T TIGR03797 584 E----GGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL----KVTRIVIAHRL--STIRNADR 653 (686)
T ss_pred C----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh----CCeEEEEecCh--HHHHcCCE
Confidence 5 23569999999999999999999999999999999999999999999875 47999999997 44567999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|++|++++.|+.+++.
T Consensus 654 Iivl~~G~iv~~G~~~~Ll 672 (686)
T TIGR03797 654 IYVLDAGRVVQQGTYDELM 672 (686)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-38 Score=360.96 Aligned_cols=216 Identities=22% Similarity=0.305 Sum_probs=180.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+.++.++|+++|+++ ++|++++|+|++ |||||||+++|+|+.+| .+|+|.+||++
T Consensus 340 ~~i~~~~vsf~y~~~~~~il~~i~l~i-----~~G~~~aIvG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~g~~ 406 (582)
T PRK11176 340 GDIEFRNVTFTYPGKEVPALRNINFKI-----PAGKTVALVGRS-----GSGKSTIANLLTRFYDI---DEGEILLDGHD 406 (582)
T ss_pred CeEEEEEEEEecCCCCCccccCceEEe-----CCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCceEEECCEE
Confidence 458999999998544578999999999 788888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
++. .+++.++||+|++.+++. |++|||.++.. ...++ ++++++++..|+ ++..|+.+|+
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~al~~~~l~~~i~~lp~Gldt~ig~- 476 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFND-TIANNIAYART----EQYSR----EQIEEAARMAYAMDFINKMDNGLDTVIGE- 476 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecc-hHHHHHhcCCC----CCCCH----HHHHHHHHHhCcHHHHHhcccccCceeCC-
Confidence 865 478899999999998875 99999988521 11122 234445555553 3446777776
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
..+.||||||||++|||||+++|++|+||||||+||+.+..++.+.|+++. +++|+|++||++ ...+.||+|+
T Consensus 477 ---~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~--~~~tvI~VtHr~--~~~~~~D~Ii 549 (582)
T PRK11176 477 ---NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQ--KNRTSLVIAHRL--STIEKADEIL 549 (582)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 4567899999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+.+++.
T Consensus 550 ~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 550 VVEDGEIVERGTHAELL 566 (582)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999998775
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=315.92 Aligned_cols=211 Identities=26% Similarity=0.339 Sum_probs=169.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~ 69 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTI-----RAGEKVAIIGRV-----GSGKSTLLKLLAGLYKP---TSGSVLLDGTDIR 69 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCeEEECCEEhH
Confidence 5789999997433357999999999 677788888777 89999999999999988 5899999999874
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC---cCCCCcc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQKV 170 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~---~~~~~~~ 170 (622)
. ..++.++|++|++.+++ .||.||+.+.... .. .+++.++++.+++.+..++.+.. ..-....
T Consensus 70 ~~~~~~~~~~i~~~~q~~~~~~-~tv~e~l~~~~~~-----~~----~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 139 (220)
T cd03245 70 QLDPADLRRNIGYVPQDVTLFY-GTLRDNITLGAPL-----AD----DERILRAAELAGVTDFVNKHPNGLDLQIGERGR 139 (220)
T ss_pred HCCHHHHHhhEEEeCCCCcccc-chHHHHhhcCCCC-----CC----HHHHHHHHHHcCcHHHHHhccccccceecCCCc
Confidence 3 24678999999988877 6999999774211 11 12355778888887666554310 0000122
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
.||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ + +|||++||++ +.+ ++||++++|++|+
T Consensus 140 ~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~-~tii~~sH~~-~~~-~~~d~v~~l~~g~ 215 (220)
T cd03245 140 GLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLG-D-KTLIIITHRP-SLL-DLVDRIIVMDSGR 215 (220)
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC-C-CEEEEEeCCH-HHH-HhCCEEEEEeCCe
Confidence 3999999999999999999999999999999999999999999999975 3 8999999997 454 7999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++.|
T Consensus 216 i~~~~ 220 (220)
T cd03245 216 IVADG 220 (220)
T ss_pred EeecC
Confidence 98754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-38 Score=317.58 Aligned_cols=212 Identities=25% Similarity=0.345 Sum_probs=169.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++..+++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~-~~~~~l~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~v~~~g~~~~ 66 (236)
T cd03253 1 IEFENVTFAYD-PGRPVLKDVSFTI-----PAGKKVAIVGPS-----GSGKSTILRLLFRFYDV---SSGSILIDGQDIR 66 (236)
T ss_pred CEEEEEEEEeC-CCCceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCEEEECCEEhh
Confidence 35789999863 3456899999999 677788888777 89999999999999988 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH-----HHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~-----~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
. .+++.+||++|++.+++ .||.||+.+..... ...+.. ..+.+.++.+ ++....++.+.+
T Consensus 67 ~~~~~~~~~~i~~~~q~~~~~~-~tv~~nl~~~~~~~-----~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~--- 137 (236)
T cd03253 67 EVTLDSLRRAIGVVPQDTVLFN-DTIGYNIRYGRPDA-----TDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK--- 137 (236)
T ss_pred hCCHHHHHhhEEEECCCChhhc-chHHHHHhhcCCCC-----CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc---
Confidence 3 35678999999988886 69999998863211 111111 1122333333 333334444444
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|+++||||||+|||+.++..+.+.|+++++ |+|||++||++ +.+. .||++++|
T Consensus 138 -----LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tiii~sh~~-~~~~-~~d~~~~l 208 (236)
T cd03253 138 -----LSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSK--GRTTIVIAHRL-STIV-NADKIIVL 208 (236)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC--CCEEEEEcCCH-HHHH-hCCEEEEE
Confidence 999999999999999999999999999999999999999999999964 89999999996 5665 59999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+.+++.
T Consensus 209 ~~g~i~~~~~~~~~~ 223 (236)
T cd03253 209 KDGRIVERGTHEELL 223 (236)
T ss_pred ECCEEEeeCCHHHHh
Confidence 999999999887654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-37 Score=311.06 Aligned_cols=202 Identities=23% Similarity=0.254 Sum_probs=171.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+.++|+++.| |+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 23 l~~~~~~~~~--~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~g~~~~ 87 (224)
T cd03220 23 LGILGRKGEV--GEFWALKDVSFEV-----PRGERIGLIGRN-----GAGKSTLLRLLAGIYPP---DSGTVTVRGRVSS 87 (224)
T ss_pred hhhhhhhhhc--CCeEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEch
Confidence 4677888864 7888999999999 678888888887 89999999999999998 5899999998753
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
. ..+...+.+.+||+||+.+...... ....+.+++++++++.++|.+..++.+++ ||||||
T Consensus 88 ~--------~~~~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSgG~~ 148 (224)
T cd03220 88 L--------LGLGGGFNPELTGRENIYLNGRLLG---LSRKEIDEKIDEIIEFSELGDFIDLPVKT--------YSSGMK 148 (224)
T ss_pred h--------hcccccCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhhCChhh--------CCHHHH
Confidence 1 1122345678999999998765432 12234455678899999999888888776 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
||++|||+|+.+|+++||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.+.+|++++|++|++++.|
T Consensus 149 qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~-~~~tiii~sH~~-~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 149 ARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLK-QGKTVILVSHDP-SSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999987 589999999996 6788899999999999998765
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=307.75 Aligned_cols=195 Identities=21% Similarity=0.277 Sum_probs=170.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~i~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (201)
T cd03231 1 LEADELTCER--DGRALFSGLSFTL-----AAGEALQVTGPN-----GSGKTTLLRILAGLSPP---LAGRVLLNGGPLD 65 (201)
T ss_pred CEEEEEEEEe--CCceeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEecc
Confidence 3688999986 6677999999999 677888888777 89999999999999998 4899999999874
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.++|++|++.+++.+||+||+.+..... ..++++++++.+++.+..++.+.+ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~---------~~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 128 (201)
T cd03231 66 FQRDSIARGLLYLGHAPGIKTTLSVLENLRFWHADH---------SDEQVEEALARVGLNGFEDRPVAQ--------LSA 128 (201)
T ss_pred cccHHhhhheEEeccccccCCCcCHHHHHHhhcccc---------cHHHHHHHHHHcCChhhhcCchhh--------CCH
Confidence 3 36788999999999999999999998853211 134578899999998888887666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ +|.|+|++||++ .+....+|+++++
T Consensus 129 G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~sH~~-~~~~~~~~~~~~~ 198 (201)
T cd03231 129 GQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCA-RGGMVVLTTHQD-LGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCc-hhhhhccceeEec
Confidence 999999999999999999999999999999999999999999986 689999999997 5777899999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-38 Score=347.91 Aligned_cols=225 Identities=21% Similarity=0.331 Sum_probs=189.2
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
.-.+.++++||+|+|+.. ++++|+|+|+++ ++|+.++++||+ |+||||+.++|-.+..| .+|+|++
T Consensus 461 ~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti-----~pGe~vALVGPS-----GsGKSTiasLL~rfY~P---tsG~Ill 527 (716)
T KOG0058|consen 461 HLQGVIEFEDVSFAYPTRPDVPVLKNLSFTI-----RPGEVVALVGPS-----GSGKSTIASLLLRFYDP---TSGRILL 527 (716)
T ss_pred cccceEEEEEeeeecCCCCCchhhcCceeee-----CCCCEEEEECCC-----CCCHHHHHHHHHHhcCC---CCCeEEE
Confidence 456789999999999866 578999999999 677788887665 89999999999999999 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
||+|+.+ .+|++||+|.|||.||.. ||+|||.|+........+....+.+.+++.+. ++++..|+.+|+.
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~--~~p~gY~T~VGEk--- 601 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSG-SIRENIAYGLDNATDEEIEAAAKMANAHEFIT--NFPDGYNTVVGEK--- 601 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecc-cHHHHHhcCCCCCCHHHHHHHHHHhChHHHHH--hCccccccccCCc---
Confidence 9999976 379999999999999987 99999999875221111111222233444444 5677899999982
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++|||||+.||+||||||-||+||..+...|.+.|.++.+ ++|||++.|.. ...+.+|+|++++
T Consensus 602 -G~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~--~rTVlvIAHRL--STV~~Ad~Ivvi~ 676 (716)
T KOG0058|consen 602 -GSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQ--GRTVLVIAHRL--STVRHADQIVVID 676 (716)
T ss_pred -cccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhc--CCeEEEEehhh--hHhhhccEEEEEc
Confidence 235999999999999999999999999999999999999999999999985 59999999996 3457899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+.+|++
T Consensus 677 ~G~V~E~G~h~eLl 690 (716)
T KOG0058|consen 677 KGRVVEMGTHDELL 690 (716)
T ss_pred CCeEEecccHHHHh
Confidence 99999999999876
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=336.82 Aligned_cols=220 Identities=27% Similarity=0.413 Sum_probs=185.7
Q ss_pred ceEEeecCCcccCCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee
Q psy2519 9 KTVILFKNNEEVPNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG 87 (622)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G 87 (622)
.++-.+++.++++||+|+| |+. ++|+++|+++ .+|+++.|+|+| ||||||+||+|.+.... +|
T Consensus 343 ~~i~~~~~~I~F~dV~f~y--~~k~~iL~gvsf~I-----~kGekVaIvG~n-----GsGKSTilr~LlrF~d~----sG 406 (591)
T KOG0057|consen 343 LPIELFGGSIEFDDVHFSY--GPKRKVLKGVSFTI-----PKGEKVAIVGSN-----GSGKSTILRLLLRFFDY----SG 406 (591)
T ss_pred CCcccCCCcEEEEeeEEEe--CCCCceecceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHHHhcc----CC
Confidence 4677889999999999997 554 4999999999 688899999887 89999999999999874 89
Q ss_pred EEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------Ccc
Q psy2519 88 DIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNS 156 (622)
Q Consensus 88 ~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~ 156 (622)
+|++||+++.. .+|+.|||||||..||.. ||.+|+.++..- .+.+ +|-++.++.|+ ++.
T Consensus 407 ~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-TIl~NI~YGn~s-----as~e----eV~e~~k~a~~hd~i~~l~~G 476 (591)
T KOG0057|consen 407 SILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-TILYNIKYGNPS-----ASDE----EVVEACKRAGLHDVISRLPDG 476 (591)
T ss_pred cEEECCeeHhhhChHHhhhheeEeCCcccccch-hHHHHhhcCCCC-----cCHH----HHHHHHHHcCcHHHHHhcccc
Confidence 99999999875 489999999999888866 999999997422 1222 23333444444 344
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++.+|+ +.+-|||||||||+||||+++||+|+++|||||.||..+-.++++.+.+.. .|+|+|++.|+. ..
T Consensus 477 Y~T~VGe----rG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~--~~rTvI~IvH~l--~l 548 (591)
T KOG0057|consen 477 YQTLVGE----RGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVM--SGRTVIMIVHRL--DL 548 (591)
T ss_pred chhhHhh----cccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhc--CCCeEEEEEecc--hh
Confidence 5666776 334599999999999999999999999999999999999999999999954 589999999996 56
Q ss_pred HhhccceeeecCCceEEecChHHHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.+-||+|+++++|++...|+.+|++.
T Consensus 549 l~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 549 LKDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HhcCCEEEEEECCeeEEeccHHHHhh
Confidence 68899999999999999999998874
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-38 Score=322.46 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=179.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++|..+..++|+++|+++ ++|+.++++|+| |||||||+++|+|+.++ +|+|.++|.++
T Consensus 2 ~i~~~nls~~~~~~~~~~l~~isl~I-----~~Ge~~~IvG~n-----GsGKSTLl~~L~gl~~~----~G~I~i~g~~i 67 (275)
T cd03289 2 QMTVKDLTAKYTEGGNAVLENISFSI-----SPGQRVGLLGRT-----GSGKSTLLSAFLRLLNT----EGDIQIDGVSW 67 (275)
T ss_pred eEEEEEEEEEeCCCCCcceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhhcCC----CcEEEECCEEh
Confidence 36789999998656677999999999 678888888887 89999999999999863 79999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC---cCCCCc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS---SSITQK 169 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~---~~~~~~ 169 (622)
.. .+|+.++||+|++.+++. ||+||+..... ... +++.+.++.+||.+..++.++. ......
T Consensus 68 ~~~~~~~lr~~i~~v~q~~~lf~~-tv~~nl~~~~~------~~~----~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g 136 (275)
T cd03289 68 NSVPLQKWRKAFGVIPQKVFIFSG-TFRKNLDPYGK------WSD----EEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136 (275)
T ss_pred hhCCHHHHhhhEEEECCCcccchh-hHHHHhhhccC------CCH----HHHHHHHHHcCCHHHHHhCcccccceecCCC
Confidence 53 467899999999999875 99999964211 111 2456778889987655554321 000113
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+.||||||||++|||||+.+|++|+|||||++||+.+...+.+.|+++. .++|||++||++ +.+. .||||++|++|
T Consensus 137 ~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~--~~~tii~isH~~-~~i~-~~dri~vl~~G 212 (275)
T cd03289 137 CVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAF--ADCTVILSEHRI-EAML-ECQRFLVIEEN 212 (275)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEECCH-HHHH-hCCEEEEecCC
Confidence 4599999999999999999999999999999999999999999999874 489999999997 5665 59999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
++++.|+++++..
T Consensus 213 ~i~~~g~~~~l~~ 225 (275)
T cd03289 213 KVRQYDSIQKLLN 225 (275)
T ss_pred eEeecCCHHHHhh
Confidence 9999999998763
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-37 Score=323.05 Aligned_cols=221 Identities=21% Similarity=0.298 Sum_probs=180.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~~G~ 94 (622)
+++++||++.| ++.++|+++|+++ ++|+.+.|+|+| ||||||||++|+|+.+|. ...+|+|.++|+
T Consensus 45 ~l~i~nl~~~~--~~~~iL~~is~~i-----~~Ge~~~IvG~n-----GsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~ 112 (305)
T PRK14264 45 KLSVEDLDVYY--GDDHALKGVSMDI-----PEKSVTALIGPS-----GCGKSTFLRCLNRMNDRIKAARIDGSVELDGQ 112 (305)
T ss_pred eEEEEEEEEEe--CCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccccccCCCCCceEEEECCE
Confidence 57889999986 5678999999999 678888888887 899999999999998620 014899999999
Q ss_pred ecCc------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc---------cc-cHHHHHHHHHHHHHHhCCCc---
Q psy2519 95 PVEG------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR---------RV-KAYQRIALINSLLIELGLMN--- 155 (622)
Q Consensus 95 ~~~~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~---------~~-~~~~~~~~v~~~l~~lgL~~--- 155 (622)
++.. ..++.++||+|++.+++. ||+||+.+........ .. .....+++++++++.+++.+
T Consensus 113 ~i~~~~~~~~~~~~~i~~v~q~~~l~~~-tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 191 (305)
T PRK14264 113 DIYQDGVNLVELRKRVGMVFQSPNPFPK-SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVN 191 (305)
T ss_pred EcccccccHHHHhhceEEEccCCccccc-cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhh
Confidence 8742 246789999999888874 9999999875432100 01 11223456888999998853
Q ss_pred -ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 -SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 -~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
..++.+.+ ||||||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +.|||++||++ +
T Consensus 192 ~~~~~~~~~--------LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~--~~tiiivtH~~-~ 260 (305)
T PRK14264 192 DRLDDNALG--------LSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAE--EYTVVVVTHNM-Q 260 (305)
T ss_pred HHhcCcccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhc--CCEEEEEEcCH-H
Confidence 34555444 999999999999999999999999999999999999999999999976 38999999996 6
Q ss_pred HHHhhccce-eeecCCceEEecChHHHH
Q psy2519 235 ELIDMFDKI-ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 235 ~i~~~~D~v-~~L~~G~iv~~G~~~~~~ 261 (622)
.+.++||++ ++|++|+++..|+++++.
T Consensus 261 ~i~~~~d~i~~~l~~G~i~~~g~~~~~~ 288 (305)
T PRK14264 261 QAARISDQTAVFLTGGELVEYDDTDKIF 288 (305)
T ss_pred HHHHhcCEEEEEecCCEEEEeCCHHHHH
Confidence 788899997 578999999999988664
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-37 Score=317.25 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=180.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC--ceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC--IIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~--~~~G~I~~~G~ 94 (622)
.++++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+|.. ..+|+|.++|+
T Consensus 16 ~l~~~~l~~~~--~~~~vl~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~ 83 (265)
T PRK14252 16 KSEVNKLNFYY--GGYQALKNINMMV-----HEKQVTALIGPS-----GCGKSTFLRCFNRMHDLYPGNHYEGEIILHPD 83 (265)
T ss_pred eEEEEEEEEEE--CCeeeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCCCCCCCcccEEEEcCc
Confidence 47889999987 5567999999999 678888888877 8999999999999987521 14899999998
Q ss_pred ecC---c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC----cccCCccC
Q psy2519 95 PVE---G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM----NSQHTRIG 162 (622)
Q Consensus 95 ~~~---~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~----~~~~~~v~ 162 (622)
++. . .+++.+||++|++.+++. ||+||+.+....... ......+++++++++.+++. +..++.++
T Consensus 84 ~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~ 160 (265)
T PRK14252 84 NVNILSPEVDPIEVRMRISMVFQKPNPFPK-SIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDLAF 160 (265)
T ss_pred cccccccccCHHHHhccEEEEccCCcCCcc-hHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCcc
Confidence 763 1 356789999999988886 999999887543211 01122245677888888874 33455555
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++.++|||
T Consensus 161 ~--------LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~--~~tiiivth~~-~~~~~~~d~ 229 (265)
T PRK14252 161 N--------LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKN--KVTILIVTHNM-QQAARVSDY 229 (265)
T ss_pred c--------CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--CCEEEEEecCH-HHHHHhCCE
Confidence 5 999999999999999999999999999999999999999999999974 58999999996 688889999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|+++..|+.+++.
T Consensus 230 i~~l~~G~i~~~g~~~~~~ 248 (265)
T PRK14252 230 TAYMYMGELIEFGATDTIF 248 (265)
T ss_pred EEEEECCEEEEeCCHHHHH
Confidence 9999999999999988764
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=315.08 Aligned_cols=203 Identities=27% Similarity=0.318 Sum_probs=174.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|.
T Consensus 4 ~l~~~~l~~~~--~~~~vl~~vs~~i-----~~Ge~~~I~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~~~-- 66 (251)
T PRK09544 4 LVSLENVSVSF--GQRRVLSDVSLEL-----KPGKILTLLGPN-----GAGKSTLVRVVLGLVAP---DEGVIKRNGK-- 66 (251)
T ss_pred EEEEeceEEEE--CCceEEEeEEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCc--
Confidence 46789999987 5667999999999 678888888887 89999999999999998 5899999872
Q ss_pred CccccccEEEEecCCCCCCCC--CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EGKFRSACGFMYQHDLFSPSL--TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~l--TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+.++|++|++.+++.+ |+.+++.+.. ... .+++.++++.+||.+..++.+.+ |||
T Consensus 67 -----~~i~~v~q~~~~~~~l~~~~~~~~~~~~------~~~----~~~~~~~l~~~gl~~~~~~~~~~--------LSg 123 (251)
T PRK09544 67 -----LRIGYVPQKLYLDTTLPLTVNRFLRLRP------GTK----KEDILPALKRVQAGHLIDAPMQK--------LSG 123 (251)
T ss_pred -----cCEEEeccccccccccChhHHHHHhccc------ccc----HHHHHHHHHHcCChHHHhCChhh--------CCH
Confidence 4699999998877764 7888765421 111 23467899999999888888766 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++||++|+.+|++|||||||+|||+.++..+.+.|++++++.|.|||++||++ +++.+.||++++|++ +++..
T Consensus 124 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~-~~i~~~~d~i~~l~~-~i~~~ 201 (251)
T PRK09544 124 GETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDL-HLVMAKTDEVLCLNH-HICCS 201 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEECC-ceEee
Confidence 9999999999999999999999999999999999999999999874489999999996 688899999999964 79999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 202 g~~~~~~ 208 (251)
T PRK09544 202 GTPEVVS 208 (251)
T ss_pred CCHHHHh
Confidence 9988763
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-38 Score=315.42 Aligned_cols=212 Identities=22% Similarity=0.292 Sum_probs=172.0
Q ss_pred ecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+.++++++|++++|..+ +.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~ 74 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTL-----HPGEVTALVGPS-----GSGKSTVVALLENFYQP---QGGQVLLD 74 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCcEEEEC
Confidence 45678899999998432 246999999999 678888888777 89999999999999998 58999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
|+++.. ..++.++|++|++.+++ .||+||+.++..........+......++++++.+ |+.+..++.+.+
T Consensus 75 g~~~~~~~~~~~~~~i~~~~q~~~l~~-~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~--- 150 (226)
T cd03248 75 GKPISQYEHKYLHSKVSLVGQEPVLFA-RSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ--- 150 (226)
T ss_pred CCchHHcCHHHHHhhEEEEecccHHHh-hhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc---
Confidence 998753 35678999999988876 59999998754321100001111122356788888 787777777665
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||+|+.+|+++||||||+|||+.++..+.+.|+++++ +.|+|++||++ +++. .||++++|
T Consensus 151 -----LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~-~~d~i~~l 221 (226)
T cd03248 151 -----LSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPE--RRTVLVIAHRL-STVE-RADQILVL 221 (226)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcC--CCEEEEEECCH-HHHH-hCCEEEEe
Confidence 999999999999999999999999999999999999999999999864 58999999997 5665 59999999
Q ss_pred cCCce
Q psy2519 247 ADSRT 251 (622)
Q Consensus 247 ~~G~i 251 (622)
++|++
T Consensus 222 ~~g~i 226 (226)
T cd03248 222 DGGRI 226 (226)
T ss_pred cCCcC
Confidence 99974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-37 Score=347.85 Aligned_cols=214 Identities=21% Similarity=0.294 Sum_probs=181.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++.| + .+++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 265 ~l~~~~l~~~~--~--~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~p---~~G~I~~~g~~~ 327 (510)
T PRK09700 265 VFEVRNVTSRD--R--KKVRDISFSV-----CRGEILGFAGLV-----GSGRTELMNCLFGVDKR---AGGEIRLNGKDI 327 (510)
T ss_pred EEEEeCccccC--C--CcccceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCcC---CCCeEEECCEEC
Confidence 58899999864 3 3899999999 677788888887 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecC---CCCCCCCCHHHHHHHHHHcC---CCc--c-ccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 97 EG-----KFRSACGFMYQH---DLFSPSLTVYEHLYFMALLK---LDR--R-VKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~---~~l~~~lTV~E~l~f~~~l~---~~~--~-~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
.. ..++.+|||+|+ ..+++.+||.||+.+....+ ... . ....+.+++++++++.+||. +..++.+
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 407 (510)
T PRK09700 328 SPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNI 407 (510)
T ss_pred CCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCcc
Confidence 53 245689999998 46889999999998753221 000 0 01222345678999999997 7788887
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||+|+.+|++|||||||+|||+.++..+.++|+++++ +|.|||++|||+ +++.++||
T Consensus 408 ~~--------LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tvi~vsHd~-~~~~~~~d 477 (510)
T PRK09700 408 TE--------LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLAD-DGKVILMVSSEL-PEIITVCD 477 (510)
T ss_pred cc--------CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCC
Confidence 77 999999999999999999999999999999999999999999999987 699999999996 68889999
Q ss_pred ceeeecCCceEEecCh
Q psy2519 242 KIILLADSRTAFIGSK 257 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~ 257 (622)
|+++|++|+++..++.
T Consensus 478 ~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 478 RIAVFCEGRLTQILTN 493 (510)
T ss_pred EEEEEECCEEEEEecC
Confidence 9999999999988765
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=351.18 Aligned_cols=219 Identities=27% Similarity=0.406 Sum_probs=178.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||.
T Consensus 314 ~~~i~~~~v~~~y~~~~~~~l~~~~~~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~ 380 (544)
T TIGR01842 314 EGHLSVENVTIVPPGGKKPTLRGISFRL-----QAGEALAIIGPS-----GSGKSTLARLIVGIWPP---TSGSVRLDGA 380 (544)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCE
Confidence 3468999999998655568999999999 688888888776 89999999999999998 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHH-----HHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQR-----IALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~-----~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
++.. .+|+.++||+|++.+++. |++||+.++... .++++. ....++.++.+ ++..|+.+++
T Consensus 381 ~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~~~~~~~~~~~~~~~i~~l--~~gl~t~~~~-- 450 (544)
T TIGR01842 381 DLKQWDRETFGKHIGYLPQDVELFPG-TVAENIARFGEN-----ADPEKIIEAAKLAGVHELILRL--PDGYDTVIGP-- 450 (544)
T ss_pred ehhhCCHHHHhhheEEecCCcccccc-cHHHHHhccCCC-----CCHHHHHHHHHHhChHHHHHhC--ccccccccCC--
Confidence 9864 478899999999998876 999999854311 122211 11233445444 2234555544
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||||+.+|++|+|||||+|||+.++.++.+.|+++.+ .|+|+|++||++ + ..+.||++++
T Consensus 451 --~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~-~~~tvi~ith~~-~-~~~~~d~i~~ 525 (544)
T TIGR01842 451 --GGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKA-RGITVVVITHRP-S-LLGCVDKILV 525 (544)
T ss_pred --CcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-H-HHHhCCEEEE
Confidence 1344999999999999999999999999999999999999999999999975 589999999997 3 4578999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 526 l~~G~i~~~g~~~~l~ 541 (544)
T TIGR01842 526 LQDGRIARFGERDEVL 541 (544)
T ss_pred EECCEEEeeCCHHHHh
Confidence 9999999999988764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-38 Score=364.06 Aligned_cols=216 Identities=20% Similarity=0.266 Sum_probs=180.0
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+.++++||+|+|+.++.++|+++|+++ ++|+++.++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 474 ~~~~I~~~~vsf~y~~~~~~vL~~isl~i-----~~Ge~vaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg 540 (710)
T TIGR03796 474 LSGYVELRNITFGYSPLEPPLIENFSLTL-----QPGQRVALVGGS-----GSGKSTIAKLVAGLYQP---WSGEILFDG 540 (710)
T ss_pred CCCeEEEEEEEEecCCCCCCcccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECC
Confidence 34568999999998655578999999999 688888888776 89999999999999999 589999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~ 162 (622)
.++.. .+|+.+|||+|++.+++. |++|||.++.. ..+. +++.++++..++. +..|+.++
T Consensus 541 ~~i~~~~~~~lr~~i~~v~Q~~~lf~g-Ti~eNi~l~~~-----~~~~----~~i~~al~~~~l~~~i~~lp~gl~t~i~ 610 (710)
T TIGR03796 541 IPREEIPREVLANSVAMVDQDIFLFEG-TVRDNLTLWDP-----TIPD----ADLVRACKDAAIHDVITSRPGGYDAELA 610 (710)
T ss_pred EeHHHCCHHHHHhheeEEecCChhhhc-cHHHHhhCCCC-----CCCH----HHHHHHHHHhCCHHHHHhCcCcccceec
Confidence 99865 479999999999998865 99999987521 1122 2244555555553 34566666
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ...+||||||||++|||||+.+|++|+||||||+||+.+..++.+.|++ .++|+|++||++ ...+.|||
T Consensus 611 e----~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~----~~~T~IiitHrl--~~i~~~D~ 680 (710)
T TIGR03796 611 E----GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGCTCIIVAHRL--STIRDCDE 680 (710)
T ss_pred c----CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh----cCCEEEEEecCH--HHHHhCCE
Confidence 5 2356999999999999999999999999999999999999999999975 479999999997 34467999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|++|+++..|+.+++.+
T Consensus 681 Iivl~~G~i~~~G~~~~Ll~ 700 (710)
T TIGR03796 681 IIVLERGKVVQRGTHEELWA 700 (710)
T ss_pred EEEEeCCEEEEecCHHHHHH
Confidence 99999999999999998763
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-37 Score=311.23 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=166.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 69 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSI-----KPGEKVGIVGRT-----GSGKSSLLLALFRLVEL---SSGSILIDGVDIS 69 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCCEEEECCEEhH
Confidence 5789999998544457999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-----------CCccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-----------HTRIG 162 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-----------~~~v~ 162 (622)
. .+++.++|++|++.+++ .||+||+.+... .. .+++.+.++.+++.+.. +..+.
T Consensus 70 ~~~~~~~~~~i~~~~q~~~l~~-~tv~enl~~~~~------~~----~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~ 138 (221)
T cd03244 70 KIGLHDLRSRISIIPQDPVLFS-GTIRSNLDPFGE------YS----DEELWQALERVGLKEFVESLPGGLDTVVEEGGE 138 (221)
T ss_pred hCCHHHHhhhEEEECCCCcccc-chHHHHhCcCCC------CC----HHHHHHHHHHhCcHHHHHhcccccccccccCCC
Confidence 3 35788999999988776 599999965321 11 12344556666654433 23333
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +.|||++||++ +++. .||+
T Consensus 139 ~--------LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~-~~d~ 206 (221)
T cd03244 139 N--------LSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFK--DCTVLTIAHRL-DTII-DSDR 206 (221)
T ss_pred c--------CCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcC--CCEEEEEeCCH-HHHh-hCCE
Confidence 3 999999999999999999999999999999999999999999999864 68999999996 5665 4999
Q ss_pred eeeecCCceEEecC
Q psy2519 243 IILLADSRTAFIGS 256 (622)
Q Consensus 243 v~~L~~G~iv~~G~ 256 (622)
+++|++|++++.|+
T Consensus 207 i~~l~~g~~~~~~~ 220 (221)
T cd03244 207 ILVLDKGRVVEFDS 220 (221)
T ss_pred EEEEECCeEEecCC
Confidence 99999999998876
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-37 Score=345.59 Aligned_cols=220 Identities=20% Similarity=0.314 Sum_probs=184.2
Q ss_pred CcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++|+++.|.. |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+|. .+|+|.++|++
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p~--~~G~i~~~g~~ 324 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSL-----RRGEILGVAGLV-----GAGRTELVQALFGAYPGK--FEGNVFINGKP 324 (500)
T ss_pred eEEEeCCcccccccccccccccceeEE-----eCCcEEEEeCCC-----CCCHHHHHHHHhCCCCCC--CCeEEEECCEE
Confidence 5789999998632 3457999999999 677888888887 899999999999999851 38999999998
Q ss_pred cCc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHH--cCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCc
Q psy2519 96 VEG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMAL--LKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSS 164 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~--l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~ 164 (622)
+.. ..++++|||+|+. .+++.+||+||+.++.. ..........+.+++++++++.++|.+ ..++++++
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 403 (500)
T TIGR02633 325 VDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGR- 403 (500)
T ss_pred CCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCcccc-
Confidence 752 2467899999995 58999999999988642 110001122334567889999999974 57888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++||+++
T Consensus 404 -------LSgGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~v~ 474 (500)
T TIGR02633 404 -------LSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQ-EGVAIIVVSSEL-AEVLGLSDRVL 474 (500)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68899999999
Q ss_pred eecCCceEEecChH
Q psy2519 245 LLADSRTAFIGSKD 258 (622)
Q Consensus 245 ~L~~G~iv~~G~~~ 258 (622)
+|++|+++..++.+
T Consensus 475 ~l~~G~i~~~~~~~ 488 (500)
T TIGR02633 475 VIGEGKLKGDFVNH 488 (500)
T ss_pred EEECCEEEEEEccc
Confidence 99999999877654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-37 Score=346.75 Aligned_cols=209 Identities=19% Similarity=0.234 Sum_probs=179.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|.++
T Consensus 3 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~G~~~p---~~G~i~~~~~~~ 67 (490)
T PRK10938 3 SLQISQGTFRL--SDTKTLQLPSLTL-----NAGDSWAFVGAN-----GSGKSALARALAGELPL---LSGERQSQFSHI 67 (490)
T ss_pred eEEEEeEEEEc--CCeeecccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCceEEECCccc
Confidence 47899999997 5667999999999 677788888777 89999999999999998 589999999876
Q ss_pred Cc----cccccEEEEecCCCC--C------CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 97 EG----KFRSACGFMYQHDLF--S------PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l--~------~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.. ..++.+||++|++.+ + ..+||+|++.+. .+..++++++++.+||.+..++.+++
T Consensus 68 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~~~~~~~~- 135 (490)
T PRK10938 68 TRLSFEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITALLDRRFKY- 135 (490)
T ss_pred ccCCHHHHHHHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhhhhCCccc-
Confidence 42 245679999998542 1 157888887542 11235678999999999888888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+||++|+.+|++|||||||+|||+.++.++.+.|+++++ +|.|||++||++ +.+.+.||+++
T Consensus 136 -------LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvii~tH~~-~~~~~~~d~v~ 206 (490)
T PRK10938 136 -------LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQ-SGITLVLVLNRF-DEIPDFVQFAG 206 (490)
T ss_pred -------CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCeEEEEeCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68889999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 207 ~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 207 VLADCTLAETGEREEIL 223 (490)
T ss_pred EEECCEEEEeCCHHHHh
Confidence 99999999999988753
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=302.87 Aligned_cols=188 Identities=24% Similarity=0.291 Sum_probs=159.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~~G~~ 95 (622)
++++||+++| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+. +| .+|+|.++|++
T Consensus 1 l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~~p---~~G~i~~~g~~ 65 (200)
T cd03217 1 LEIKDLHVSV--GGKEILKGVNLTI-----KKGEVHALMGPN-----GSGKSTLAKTIMGHPKYEV---TEGEILFKGED 65 (200)
T ss_pred CeEEEEEEEe--CCEEeeeccceEE-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCcCCC---CccEEEECCEE
Confidence 3578999987 4567999999999 678888888777 899999999999994 56 58999999998
Q ss_pred cCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.. . .++.++|++|++.+++.+|+++++ +....+
T Consensus 66 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~l----------------------------------~~~~~~------- 104 (200)
T cd03217 66 ITDLPPEERARLGIFLAFQYPPEIPGVKNADFL----------------------------------RYVNEG------- 104 (200)
T ss_pred CCcCCHHHHhhCcEEEeecChhhccCccHHHHH----------------------------------hhcccc-------
Confidence 864 1 245699999999999988988876 001123
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hccceeeecCC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADS 249 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~~L~~G 249 (622)
||||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ .|+|||++||++ +.+.+ .+|++++|++|
T Consensus 105 -LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~-~~~tiii~sh~~-~~~~~~~~d~i~~l~~G 181 (200)
T cd03217 105 -FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLRE-EGKSVLIITHYQ-RLLDYIKPDRVHVLYDG 181 (200)
T ss_pred -CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999986 689999999997 56766 79999999999
Q ss_pred ceEEecChHHHHHHHH
Q psy2519 250 RTAFIGSKDAALAFLE 265 (622)
Q Consensus 250 ~iv~~G~~~~~~~~~~ 265 (622)
++++.|+.+ +.+.+.
T Consensus 182 ~i~~~~~~~-~~~~~~ 196 (200)
T cd03217 182 RIVKSGDKE-LALEIE 196 (200)
T ss_pred EEEEEccHH-HHhhhc
Confidence 999999544 554443
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-37 Score=302.39 Aligned_cols=194 Identities=23% Similarity=0.296 Sum_probs=166.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~~l~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (198)
T TIGR01189 1 LAARNLACSR--GERMLFEGLSFTL-----NAGEALQVTGPN-----GIGKTTLLRILAGLLRP---DSGEVRWNGTALA 65 (198)
T ss_pred CEEEEEEEEE--CCEEEEeeeeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEEcc
Confidence 3678999986 6678999999999 678888888887 89999999999999988 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. ..++.++|++|++.+++.+||.||+.+...... . + .++++++++.++|.+..++.+++ |||
T Consensus 66 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~----~-~--~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 130 (198)
T TIGR01189 66 EQRDEPHRNILYLGHLPGLKPELSALENLHFWAAIHG----G-A--QRTIEDALAAVGLTGFEDLPAAQ--------LSA 130 (198)
T ss_pred cchHHhhhheEEeccCcccccCCcHHHHHHHHHHHcC----C-c--HHHHHHHHHHcCCHHHhcCChhh--------cCH
Confidence 3 356789999999889999999999988754332 1 1 23567899999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++. .+ .+++++.
T Consensus 131 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sH~~~-~~--~~~~~~~ 197 (198)
T TIGR01189 131 GQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLA-RGGIVLLTTHQDL-GL--VEARELR 197 (198)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEEcccc-cc--cceEEee
Confidence 999999999999999999999999999999999999999999976 6899999999973 33 4577654
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=352.49 Aligned_cols=215 Identities=27% Similarity=0.395 Sum_probs=182.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+.++.++|+++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||++
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i-----~~G~~~aivG~s-----GsGKSTL~~ll~g~~~p---~~G~I~i~g~~ 403 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQI-----KAGEKVALLGRT-----GCGKSTLLQLLTRAWDP---QQGEILLNGQP 403 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCEE
Confidence 458899999998544467999999999 678888888775 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc------cCCccCCcC
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS------QHTRIGSSS 165 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~------~~~~v~~~~ 165 (622)
+.+ .+|+.+|||+|++.+++. |++||+.++.. ..+ .+.+.++++.+++.+. .|+.+|+
T Consensus 404 i~~~~~~~~r~~i~~v~Q~~~lf~~-ti~~Ni~~~~~-----~~~----~~~i~~al~~~~l~~~i~~p~GldT~vge-- 471 (574)
T PRK11160 404 IADYSEAALRQAISVVSQRVHLFSA-TLRDNLLLAAP-----NAS----DEALIEVLQQVGLEKLLEDDKGLNAWLGE-- 471 (574)
T ss_pred hhhCCHHHHHhheeEEcccchhhcc-cHHHHhhcCCC-----ccC----HHHHHHHHHHcCCHHHHcCccccCchhcC--
Confidence 865 478999999999988875 99999988631 112 2346677888887653 4566665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +++|+|+++|++ +.+ +.||+|++
T Consensus 472 --~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~--~~~tviiitHr~-~~~-~~~d~i~~ 545 (574)
T PRK11160 472 --GGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHA--QNKTVLMITHRL-TGL-EQFDRICV 545 (574)
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCh-hHH-HhCCEEEE
Confidence 234599999999999999999999999999999999999999999999986 479999999997 344 56999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+.+++.
T Consensus 546 l~~G~i~~~g~~~~l~ 561 (574)
T PRK11160 546 MDNGQIIEQGTHQELL 561 (574)
T ss_pred EeCCeEEEeCCHHHHH
Confidence 9999999999998775
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=316.07 Aligned_cols=225 Identities=18% Similarity=0.193 Sum_probs=175.2
Q ss_pred eEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 10 TVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
...-++..++++|++++|...+.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|
T Consensus 12 ~~~~~~~~i~~~~l~~~~~~~~~~il~~isl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i 78 (257)
T cd03288 12 GLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYI-----KPGQKVGICGRT-----GSGKSSLSLAFFRMVDI---FDGKI 78 (257)
T ss_pred ccccCCceEEEEEEEEEeCCCCCcceeEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcccCC---CCCeE
Confidence 345567889999999997432357999999999 678888888777 89999999999999988 58999
Q ss_pred EECCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGS 163 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~ 163 (622)
.++|+++.. .+++.++|++|++.+++ .|++||+...... .............+++.++.+ |++...+....+
T Consensus 79 ~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~-~tv~~nl~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~ 156 (257)
T cd03288 79 VIDGIDISKLPLHTLRSRLSIILQDPILFS-GSIRFNLDPECKC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGEN 156 (257)
T ss_pred EECCEEhhhCCHHHHhhhEEEECCCCcccc-cHHHHhcCcCCCC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCc
Confidence 999998754 35788999999998876 4999998542110 000000000011233444444 444444443333
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.+++++ ++.|||++||++ +++. .|||+
T Consensus 157 --------LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~--~~~tiii~sh~~-~~~~-~~dri 224 (257)
T cd03288 157 --------FSVGQRQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAF--ADRTVVTIAHRV-STIL-DADLV 224 (257)
T ss_pred --------CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhc--CCCEEEEEecCh-HHHH-hCCEE
Confidence 99999999999999999999999999999999999999999999974 489999999997 4665 49999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+++++.
T Consensus 225 ~~l~~G~i~~~g~~~~~~ 242 (257)
T cd03288 225 LVLSRGILVECDTPENLL 242 (257)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988764
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=353.08 Aligned_cols=213 Identities=21% Similarity=0.299 Sum_probs=181.1
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+ ++.++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.+
T Consensus 339 ~~i~~~~v~f~y~-~~~~il~~i~l~i-----~~Ge~iaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~idg~~ 404 (592)
T PRK10790 339 GRIDIDNVSFAYR-DDNLVLQNINLSV-----PSRGFVALVGHT-----GSGKSTLASLLMGYYPL---TEGEIRLDGRP 404 (592)
T ss_pred CeEEEEEEEEEeC-CCCceeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCceEEECCEE
Confidence 4588999999985 4467999999999 788888888775 89999999999999999 48999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+++ .+|++|+||+|++.+|+. |++|||.++. . .++ +++.++++.+|+. +..|+.+++
T Consensus 405 i~~~~~~~l~~~i~~v~Q~~~lF~~-Ti~~NI~~~~--~----~~d----~~i~~a~~~~gl~~~i~~lp~Gldt~i~e- 472 (592)
T PRK10790 405 LSSLSHSVLRQGVAMVQQDPVVLAD-TFLANVTLGR--D----ISE----EQVWQALETVQLAELARSLPDGLYTPLGE- 472 (592)
T ss_pred hhhCCHHHHHhheEEEccCCccccc-hHHHHHHhCC--C----CCH----HHHHHHHHHcCcHHHHHhccccccccccC-
Confidence 865 478999999999999987 9999999863 1 121 2355666666654 345666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++.+ ++|+|++||++ ...+.||+|+
T Consensus 473 ---~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~--~~tvIivtHr~--~~l~~~D~ii 545 (592)
T PRK10790 473 ---QGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVRE--HTTLVVIAHRL--STIVEADTIL 545 (592)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhC--CCEEEEEecch--HHHHhCCEEE
Confidence 2345999999999999999999999999999999999999999999999864 69999999997 4456799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 546 ~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 546 VLHRGQAVEQGTHQQLL 562 (592)
T ss_pred EEECCEEEEEcCHHHHH
Confidence 99999999999999875
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-37 Score=305.09 Aligned_cols=198 Identities=23% Similarity=0.348 Sum_probs=169.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||++.| ++..+++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 2 ~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 66 (207)
T PRK13539 2 MLEGEDLACVR--GGRVLFSGLSFTL-----AAGEALVLTGPN-----GSGKTTLLRLIAGLLPP---AAGTIKLDGGDI 66 (207)
T ss_pred EEEEEeEEEEE--CCeEEEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEeC
Confidence 36789999986 5667999999999 677888888777 89999999999999988 589999999886
Q ss_pred Cc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. ..++.++|++|++.+++.+||.||+.+...... .. .++++++++.+||.+..++.+++ ||||
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------LS~G 131 (207)
T PRK13539 67 DDPDVAEACHYLGHRNAMKPALTVAENLEFWAAFLG---GE----ELDIAAALEAVGLAPLAHLPFGY--------LSAG 131 (207)
T ss_pred cchhhHhhcEEecCCCcCCCCCcHHHHHHHHHHhcC---Cc----HHHHHHHHHHcCCHHHHcCChhh--------cCHH
Confidence 43 257789999999888999999999988654431 11 13478899999998777777666 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ .++.+ |+++.+..
T Consensus 132 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiii~sH~~-~~~~~--~~~~~~~~ 200 (207)
T PRK13539 132 QKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLA-QGGIVIAATHIP-LGLPG--ARELDLGP 200 (207)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCc-hhhcc--CcEEeecC
Confidence 99999999999999999999999999999999999999999987 699999999996 56654 88877743
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=295.20 Aligned_cols=169 Identities=32% Similarity=0.468 Sum_probs=152.6
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~~l~~~~--~~~~~l~~~~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~~ 66 (173)
T cd03230 2 EVRNLSKRY--GKKTALDDISLTV-----EKGEIYGLLGPN-----GAGKTTLIKIILGLLKP---DSGEIKVLGKDIKK 66 (173)
T ss_pred EEEEEEEEE--CCeeeeeeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEccc
Confidence 578999986 4557999999999 677788888777 89999999999999988 48999999998753
Q ss_pred ---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 99 ---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 99 ---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
..++.++|++|++.+++.+|+.||+. ||||
T Consensus 67 ~~~~~~~~i~~~~q~~~~~~~~tv~~~~~-----------------------------------------------LS~G 99 (173)
T cd03230 67 EPEEVKRRIGYLPEEPSLYENLTVRENLK-----------------------------------------------LSGG 99 (173)
T ss_pred chHhhhccEEEEecCCccccCCcHHHHhh-----------------------------------------------cCHH
Confidence 45678999999999999999999973 7999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.+.+|++++|++|++
T Consensus 100 ~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tiii~th~~-~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 100 MKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKK-EGKTILLSSHIL-EEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEECCCH-HHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999999999987 489999999996 678889999999999974
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-37 Score=302.10 Aligned_cols=193 Identities=19% Similarity=0.229 Sum_probs=165.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~~--~~~~il~~~s~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 66 (200)
T PRK13540 2 LDVIELDFDY--HDQPLLQQISFHL-----PAGGLLHLKGSN-----GAGKTTLLKLIAGLLNP---EKGEILFERQSIK 66 (200)
T ss_pred EEEEEEEEEe--CCeeEEeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeeEEECCCccc
Confidence 5789999986 5677999999999 678888888777 89999999999999998 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.+||++|+..+++.+||+||+.+..... . . ..+++++++.+++.+..++.+++ |||
T Consensus 67 ~~~~~~~~~i~~~~q~~~~~~~~tv~~~~~~~~~~~-----~-~--~~~~~~~l~~~~l~~~~~~~~~~--------LS~ 130 (200)
T PRK13540 67 KDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFS-----P-G--AVGITELCRLFSLEHLIDYPCGL--------LSS 130 (200)
T ss_pred cCHHHHHhheEEeccccccCcCCCHHHHHHHHHhcC-----c-c--hHHHHHHHHHcCCchhhhCChhh--------cCH
Confidence 3 35778999999988989999999999864321 1 1 23578999999998777777666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|+++++ .|.|||++||++ +..+.+|...
T Consensus 131 G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~--~~~~~~d~~~ 197 (200)
T PRK13540 131 GQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRA-KGGAVLLTSHQD--LPLNKADYEE 197 (200)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHH-cCCEEEEEeCCc--hhccccchhh
Confidence 999999999999999999999999999999999999999999976 699999999996 3445677544
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-37 Score=305.56 Aligned_cols=205 Identities=21% Similarity=0.268 Sum_probs=169.6
Q ss_pred CcccCCccccccc---c--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIV---G--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
+++++||++.|.. + +.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~ 67 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTV-----NAGECVALSGPS-----GAGKSTLLKSLYANYLP---DSGRILV 67 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEE
Confidence 3678999999732 1 257999999999 678888888777 89999999999999998 4899999
Q ss_pred C--CE--ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cC
Q psy2519 92 N--GK--PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QH 158 (622)
Q Consensus 92 ~--G~--~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~ 158 (622)
+ |+ ++.. . .++.+||++|++.+++.+||+||+.+...... ....+..+++.++++.+||.+. .+
T Consensus 68 ~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~ 144 (224)
T TIGR02324 68 RHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERG---VPREAARARARELLARLNIPERLWH 144 (224)
T ss_pred ecCCCccchhhcCHHHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhh
Confidence 8 43 4321 1 24579999999999999999999988654321 2223345577899999999763 46
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
+.+.+ ||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.+
T Consensus 145 ~~~~~--------LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~-~g~tii~vsH~~-~~~~~ 214 (224)
T TIGR02324 145 LPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKA-RGAALIGIFHDE-EVREL 214 (224)
T ss_pred CCccc--------CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHH
Confidence 66655 999999999999999999999999999999999999999999999986 699999999995 67778
Q ss_pred hccceeeec
Q psy2519 239 MFDKIILLA 247 (622)
Q Consensus 239 ~~D~v~~L~ 247 (622)
+||+++.+.
T Consensus 215 ~~d~i~~~~ 223 (224)
T TIGR02324 215 VADRVMDVT 223 (224)
T ss_pred hcceeEecC
Confidence 999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-36 Score=309.52 Aligned_cols=198 Identities=19% Similarity=0.175 Sum_probs=171.3
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
+..++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+ +++++|
T Consensus 35 ~~~~il~~is~~i-----~~Ge~~~liG~N-----GsGKSTLlk~L~Gl~~p---~~G~I~~~g~---------~~~~~~ 92 (264)
T PRK13546 35 KTFFALDDISLKA-----YEGDVIGLVGIN-----GSGKSTLSNIIGGSLSP---TVGKVDRNGE---------VSVIAI 92 (264)
T ss_pred CceEEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CceEEEECCE---------EeEEec
Confidence 4467899999999 678888888887 79999999999999998 4899999985 456778
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+..+.+.+|+.||+.+...... ...++..+.++++++.++|.+..++.+++ ||||||||++||++|+.+
T Consensus 93 ~~~~~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~Gq~qrv~Laral~~~ 161 (264)
T PRK13546 93 SAGLSGQLTGIENIEFKMLCMG---FKRKEIKAMTPKIIEFSELGEFIYQPVKK--------YSSGMRAKLGFSINITVN 161 (264)
T ss_pred ccCCCCCCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCccc--------CCHHHHHHHHHHHHHhhC
Confidence 7778888999999987654332 12334455677889999998888887766 999999999999999999
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHH
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|||||||+|||+.++..+.+.|.++++ .|.|||++||++ .++.+.||++++|++|+++..|+++++.+
T Consensus 162 p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~-~g~tiIiisH~~-~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 162 PDILVIDEALSVGDQTFAQKCLDKIYEFKE-QNKTIFFVSHNL-GQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 999999999999999999999999999976 699999999996 67888999999999999999999987754
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-37 Score=359.07 Aligned_cols=218 Identities=25% Similarity=0.361 Sum_probs=182.2
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 461 ~~~I~~~~vsf~Y~~~~~~vL~~i~l~i-----~~G~~iaIvG~s-----GsGKSTLlklL~gl~~p---~~G~I~idg~ 527 (694)
T TIGR03375 461 QGEIEFRNVSFAYPGQETPALDNVSLTI-----RPGEKVAIIGRI-----GSGKSTLLKLLLGLYQP---TEGSVLLDGV 527 (694)
T ss_pred cceEEEEEEEEEeCCCCccceeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCE
Confidence 4568999999998545567999999999 688888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++. |++|||.++.. ..+++ ++.++++..++ ++..|+.+++
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~~~lf~~-TI~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~T~i~e 597 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQDPRLFYG-TLRDNIALGAP-----YADDE----EILRAAELAGVTEFVRRHPDGLDMQIGE 597 (694)
T ss_pred EhhhCCHHHHHhccEEECCChhhhhh-hHHHHHhCCCC-----CCCHH----HHHHHHHHcChHHHHHhCcccccceecC
Confidence 9865 479999999999998876 99999988631 11222 23444444444 3455777766
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++++||||||+||+.+..++.+.|+++.+ ++|+|++||++ ...+.||+|
T Consensus 598 ----~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~--~~T~iiItHrl--~~~~~~D~i 669 (694)
T TIGR03375 598 ----RGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLA--GKTLVLVTHRT--SLLDLVDRI 669 (694)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH--HHHHhCCEE
Confidence 2345999999999999999999999999999999999999999999999864 79999999997 345789999
Q ss_pred eeecCCceEEecChHHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~~ 263 (622)
++|++|++++.|+.+++.+.
T Consensus 670 ivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 670 IVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred EEEeCCEEEeeCCHHHHHHH
Confidence 99999999999999987643
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-37 Score=351.38 Aligned_cols=222 Identities=27% Similarity=0.377 Sum_probs=181.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+ ++.++++++|+++ ++|+++.++|++ |||||||+++|.|+..| .+|+|.+||+|
T Consensus 327 ~~I~f~~vsf~y~-~~~~vl~~is~~i-----~~Ge~vaiVG~s-----GsGKSTl~~LL~r~~~~---~~G~I~idg~d 392 (567)
T COG1132 327 GSIEFENVSFSYP-GKKPVLKDISFSI-----EPGEKVAIVGPS-----GSGKSTLIKLLLRLYDP---TSGEILIDGID 392 (567)
T ss_pred CeEEEEEEEEEcC-CCCccccCceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCeEEECCEe
Confidence 4589999999982 3678999999999 678888888775 89999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
++. .+|+.+|||+|++.+|. -||+||+.++..-..+..+.+..+...+++.++.+ ++..|+.+|+ ....
T Consensus 393 I~~i~~~~lr~~I~~V~Qd~~LF~-~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~l--p~g~dt~vge----~G~~ 465 (567)
T COG1132 393 IRDISLDSLRKRIGIVSQDPLLFS-GTIRENIALGRPDATDEEIEEALKLANAHEFIANL--PDGYDTIVGE----RGVN 465 (567)
T ss_pred hhhcCHHHHHHhccEEcccceeec-ccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhC--cccccceecC----CCcc
Confidence 976 48999999999999998 69999999974321101111111112233444443 5567888885 2245
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||++||||++.+|++|+||||||+||+.+...+.+.++++.+ |+|+++++|.+ +.+. .+|+|++|++|++
T Consensus 466 LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~--~rT~iiIaHRl-sti~-~aD~IiVl~~G~i 541 (567)
T COG1132 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLK--GRTTLIIAHRL-STIK-NADRIIVLDNGRI 541 (567)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhc--CCEEEEEeccH-hHHH-hCCEEEEEECCEE
Confidence 999999999999999999999999999999999999999999998874 68999999997 4554 4999999999999
Q ss_pred EEecChHHHHH
Q psy2519 252 AFIGSKDAALA 262 (622)
Q Consensus 252 v~~G~~~~~~~ 262 (622)
++.|+.+++..
T Consensus 542 ~e~G~h~eLl~ 552 (567)
T COG1132 542 VERGTHEELLA 552 (567)
T ss_pred EEecCHHHHHH
Confidence 99999998864
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-38 Score=333.84 Aligned_cols=215 Identities=28% Similarity=0.370 Sum_probs=185.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+-.+.++|+|+|+++ ++|+++.|+|++ |||||||+.+|.|...| .+|+|.+||.++
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l-----~~GEkvAIlG~S-----GsGKSTllqLl~~~~~~---~~G~i~~~g~~~ 402 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTL-----AQGEKVAILGRS-----GSGKSTLLQLLAGAWDP---QQGSITLNGVEI 402 (573)
T ss_pred eeeeccceeecCCCccchhhccceee-----cCCCeEEEECCC-----CCCHHHHHHHHHhccCC---CCCeeeECCcCh
Confidence 57999999999655668999999999 789999999875 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~~~~ 165 (622)
.. .+|+.+++++|...+|.. |+++||.++..- -++ +.+.++++++||++. .|+.+|+
T Consensus 403 ~~l~~~~~~e~i~vl~Qr~hlF~~-Tlr~NL~lA~~~-----AsD----Eel~~aL~qvgL~~l~~~~p~gl~t~lge-- 470 (573)
T COG4987 403 ASLDEQALRETISVLTQRVHLFSG-TLRDNLRLANPD-----ASD----EELWAALQQVGLEKLLESAPDGLNTWLGE-- 470 (573)
T ss_pred hhCChhhHHHHHhhhccchHHHHH-HHHHHHhhcCCC-----CCH----HHHHHHHHHcCHHHHHHhChhhhhchhcc--
Confidence 64 378899999999888876 999999886421 122 345678888888654 3456666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+.||||||||++|||+|++|.++++|||||.|||+.+.+++++.|.+-++ |+|+|++||+.. .+ +.||||++
T Consensus 471 --~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~--~kTll~vTHrL~-~l-e~~drIiv 544 (573)
T COG4987 471 --GGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAE--GKTLLMVTHRLR-GL-ERMDRIIV 544 (573)
T ss_pred --CCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhc--CCeEEEEecccc-cH-hhcCEEEE
Confidence 2467999999999999999999999999999999999999999999999874 899999999973 44 68999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|+++.+|..+++..
T Consensus 545 l~~Gkiie~G~~~~Ll~ 561 (573)
T COG4987 545 LDNGKIIEEGTHAELLA 561 (573)
T ss_pred EECCeeeecCCHHhhhc
Confidence 99999999999998763
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=312.36 Aligned_cols=220 Identities=21% Similarity=0.332 Sum_probs=191.9
Q ss_pred cccCCcccccccc---------ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 18 EEVPNVDFSEIVG---------SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 18 ~~~~~~~~~~~~g---------~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
++.++|...|+.. ...+++++|+++ ++|+...++|. ||||||||=.+|.+++++ +|+
T Consensus 277 l~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L-----~~gqTlGlVGE-----SGSGKsTlG~allrL~~s----~G~ 342 (534)
T COG4172 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTL-----RRGQTLGLVGE-----SGSGKSTLGLALLRLIPS----QGE 342 (534)
T ss_pred EEecceEEEEecCCccccccchheEEeccceeEe-----cCCCeEEEEec-----CCCCcchHHHHHHhhcCc----Cce
Confidence 3556666665421 256789999999 56666666655 489999999999999987 699
Q ss_pred EEECCEecCc-------cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccC
Q psy2519 89 IRVNGKPVEG-------KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQH 158 (622)
Q Consensus 89 I~~~G~~~~~-------~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~ 158 (622)
|.|+|+++.. .+|+++-.||||+ .|.|.+||.|-+.-+...+.+ ..+..++.+++.++|+++||+. .++
T Consensus 343 I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~-~ls~~eR~~rv~~aL~EVGLDp~~r~ 421 (534)
T COG4172 343 IRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEP-KLSAAERDQRVIEALEEVGLDPATRN 421 (534)
T ss_pred EEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCC-CCCHHHHHHHHHHHHHHcCCChhHhh
Confidence 9999999974 2689999999997 599999999999998877654 3577889999999999999964 456
Q ss_pred CccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 159 TRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 159 ~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
++ |++ .|||||||++||||++.+|++++||||||+||-.-+.+|+++|++|.+++|.+-++++||. ..+..
T Consensus 422 RY-----PhE---FSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL-~VvrA 492 (534)
T COG4172 422 RY-----PHE---FSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDL-AVVRA 492 (534)
T ss_pred cC-----Ccc---cCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccH-HHHHH
Confidence 66 666 9999999999999999999999999999999999999999999999998999999999996 78999
Q ss_pred hccceeeecCCceEEecChHHHH
Q psy2519 239 MFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 239 ~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
+||+|++|++|+||++|+.++++
T Consensus 493 l~~~viVm~~GkiVE~G~~~~if 515 (534)
T COG4172 493 LCHRVIVMRDGKIVEQGPTEAVF 515 (534)
T ss_pred hhceEEEEeCCEEeeeCCHHHHh
Confidence 99999999999999999999876
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-37 Score=358.85 Aligned_cols=216 Identities=24% Similarity=0.323 Sum_probs=179.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|. ++.++|+++|+++ ++|+.++++|++ |||||||+++|+|+.+| .+|+|++||.
T Consensus 471 ~~~I~~~~vsf~y~-~~~~iL~~isl~i-----~~G~~vaIvG~S-----GsGKSTLlklL~gl~~p---~~G~I~idg~ 536 (708)
T TIGR01193 471 NGDIVINDVSYSYG-YGSNILSDISLTI-----KMNSKTTIVGMS-----GSGKSTLAKLLVGFFQA---RSGEILLNGF 536 (708)
T ss_pred CCcEEEEEEEEEcC-CCCcceeceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCcEEEECCE
Confidence 45689999999984 3467999999999 678888888775 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.+ .+|+.+|||+|++.+++. |++|||.++.... .+.+ ++.++++..++ ++..|+.+++
T Consensus 537 ~i~~~~~~~lr~~i~~v~Q~~~lf~g-TI~eNi~l~~~~~----~~~~----~i~~a~~~a~l~~~i~~lp~gldt~i~e 607 (708)
T TIGR01193 537 SLKDIDRHTLRQFINYLPQEPYIFSG-SILENLLLGAKEN----VSQD----EIWAACEIAEIKDDIENMPLGYQTELSE 607 (708)
T ss_pred EHHHcCHHHHHHheEEEecCceehhH-HHHHHHhccCCCC----CCHH----HHHHHHHHhCCHHHHHhcccccCcEecC
Confidence 9865 478999999999998876 9999999863211 1222 23344444444 3345777765
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++|++|+|||||++||+.+...+.+.|+++ .|+|+|++||++ ...+.+|+|
T Consensus 608 ----~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~---~~~T~IiitHr~--~~~~~~D~i 678 (708)
T TIGR01193 608 ----EGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL---QDKTIIFVAHRL--SVAKQSDKI 678 (708)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh---cCCEEEEEecch--HHHHcCCEE
Confidence 23459999999999999999999999999999999999999999999985 378999999997 345789999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|+++..|+.+++.+
T Consensus 679 ~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 679 IVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998753
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-37 Score=295.81 Aligned_cols=171 Identities=26% Similarity=0.385 Sum_probs=153.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|++++| +++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~~------~l~~vs~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~ 64 (182)
T cd03215 4 VLEVRGLSVKG------AVRDVSFEV-----RAGEIVGIAGLV-----GNGQTELAEALFGLRPP---ASGEITLDGKPV 64 (182)
T ss_pred EEEEeccEEEe------eecceEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 57889999985 899999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.++|++|++ .+++.+|++||+.+...
T Consensus 65 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~~---------------------------------------- 104 (182)
T cd03215 65 TRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIALSSL---------------------------------------- 104 (182)
T ss_pred CccCHHHHHhCCeEEecCCcccCcccCCCcHHHHHHHHhh----------------------------------------
Confidence 53 2467899999984 58889999999877421
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|+++||||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.++||++++|++
T Consensus 105 ---LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~v~~l~~ 179 (182)
T cd03215 105 ---LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELAD-AGKAVLLISSEL-DELLGLCDRILVMYE 179 (182)
T ss_pred ---cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEecC
Confidence 799999999999999999999999999999999999999999999986 589999999996 688899999999999
Q ss_pred Cce
Q psy2519 249 SRT 251 (622)
Q Consensus 249 G~i 251 (622)
|++
T Consensus 180 G~i 182 (182)
T cd03215 180 GRI 182 (182)
T ss_pred CcC
Confidence 975
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-37 Score=341.08 Aligned_cols=214 Identities=17% Similarity=0.277 Sum_probs=180.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++ .+++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 257 ~l~~~~l~~-------~~l~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~G~~~p---~~G~I~~~g~~i 316 (501)
T PRK10762 257 RLKVDNLSG-------PGVNDVSFTL-----RKGEILGVSGLM-----GAGRTELMKVLYGALPR---TSGYVTLDGHEV 316 (501)
T ss_pred EEEEeCccc-------CCcccceEEE-----cCCcEEEEecCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 356777775 2589999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCC---ccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLD---RRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~---~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
.. ..++.+|||+|++ .+++.+||.||+.+....... ......+.+++++++++.+||. +..++.+++
T Consensus 317 ~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 395 (501)
T PRK10762 317 VTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL- 395 (501)
T ss_pred CCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhh-
Confidence 53 2456799999995 588999999999875321100 0012233456788999999995 678888777
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++||+++
T Consensus 396 -------LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~g~tviivtHd~-~~~~~~~d~v~ 466 (501)
T PRK10762 396 -------LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKA-EGLSIILVSSEM-PEVLGMSDRIL 466 (501)
T ss_pred -------CCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 599999999996 68899999999
Q ss_pred eecCCceEEecChHHH
Q psy2519 245 LLADSRTAFIGSKDAA 260 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~ 260 (622)
+|++|+++..|+++++
T Consensus 467 ~l~~G~i~~~~~~~~~ 482 (501)
T PRK10762 467 VMHEGRISGEFTREQA 482 (501)
T ss_pred EEECCEEEEEeccccC
Confidence 9999999999987754
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-37 Score=348.96 Aligned_cols=215 Identities=23% Similarity=0.290 Sum_probs=178.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|+|+ ++.++|+++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 332 ~~~I~~~~vsf~y~-~~~~iL~~inl~i-----~~G~~v~IvG~s-----GsGKSTLl~lL~gl~~p---~~G~I~i~g~ 397 (588)
T PRK13657 332 KGAVEFDDVSFSYD-NSRQGVEDVSFEA-----KPGQTVAIVGPT-----GAGKSTLINLLQRVFDP---QSGRILIDGT 397 (588)
T ss_pred CCeEEEEEEEEEeC-CCCceecceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECCE
Confidence 44689999999985 4457999999999 778888888775 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++.. .+|+.++||+|++.+++. |++||+.++.. . .+++ ++.++++.+++. +..|+.+++
T Consensus 398 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~-~----~~d~----~i~~al~~~~l~~~i~~lp~gldt~i~~ 467 (588)
T PRK13657 398 DIRTVTRASLRRNIAVVFQDAGLFNR-SIEDNIRVGRP-D----ATDE----EMRAAAERAQAHDFIERKPDGYDTVVGE 467 (588)
T ss_pred EhhhCCHHHHHhheEEEecCcccccc-cHHHHHhcCCC-C----CCHH----HHHHHHHHhCHHHHHHhCcccccchhcC
Confidence 9875 478999999999998865 99999988521 1 1222 234445555443 345666665
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..+.||||||||++|||||+.+|++++||||||+||+.+...+.+.|+++. .++|+|++||++ ...+.+|+|
T Consensus 468 ----~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~--~~~tvIiitHr~--~~~~~~D~i 539 (588)
T PRK13657 468 ----RGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELM--KGRTTFIIAHRL--STVRNADRI 539 (588)
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--cCCEEEEEEecH--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 455789999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 540 i~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 540 LVFDNGRVVESGSFDELV 557 (588)
T ss_pred EEEECCEEEEeCCHHHHH
Confidence 999999999999988775
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=303.60 Aligned_cols=194 Identities=25% Similarity=0.337 Sum_probs=162.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC--CCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~--~~lTV~E~l~f 125 (622)
++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.. .++.++|++|++.++ ..+|+.||+.+
T Consensus 4 ~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~~~tv~~~l~~ 74 (223)
T TIGR03771 4 DKGELLGLLGPN-----GAGKTTLLRAILGLIPP---AKGTVKVAGASPGK-GWRHIGYVPQRHEFAWDFPISVAHTVMS 74 (223)
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCccchH-hhCcEEEecccccccCCCCccHHHHHHh
Confidence 467788888777 89999999999999998 58999999998643 467899999998664 34899999987
Q ss_pred HHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 126 MALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 126 ~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
+...... ......+..+++.++++.+++.+..++.+++ ||||||||++|||+|+.+|++++|||||+|||+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~qrv~laral~~~p~llilDEP~~~LD~ 146 (223)
T TIGR03771 75 GRTGHIGWLRRPCVADFAAVRDALRRVGLTELADRPVGE--------LSGGQRQRVLVARALATRPSVLLLDEPFTGLDM 146 (223)
T ss_pred ccccccccccCCcHHHHHHHHHHHHHhCCchhhcCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCH
Confidence 5321100 0011122345688999999999888888766 999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.++..+.+.|+++++ +|+|+|++||++ +++.+.||+++++ +|++++.|+++++.
T Consensus 147 ~~~~~l~~~l~~~~~-~~~tvii~sH~~-~~~~~~~d~i~~l-~G~i~~~~~~~~~~ 200 (223)
T TIGR03771 147 PTQELLTELFIELAG-AGTAILMTTHDL-AQAMATCDRVVLL-NGRVIADGTPQQLQ 200 (223)
T ss_pred HHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEE-CCEEEeecCHHHhc
Confidence 999999999999986 699999999996 6788999999999 89999999988764
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-36 Score=327.42 Aligned_cols=212 Identities=17% Similarity=0.188 Sum_probs=179.8
Q ss_pred CCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+++++||++.|..+. .++|+++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|.
T Consensus 20 ~mL~lknL~~~~~~~~~~~IL~nVSfsI-----~~GEivgIiGpN-----GSGKSTLLkiLaGLl~P---~sGeI~I~G~ 86 (549)
T PRK13545 20 PFDKLKDLFFRSKDGEYHYALNNISFEV-----PEGEIVGIIGLN-----GSGKSTLSNLIAGVTMP---NKGTVDIKGS 86 (549)
T ss_pred ceeEEEEEEEecCCCccceEEeeeEEEE-----eCCCEEEEEcCC-----CCCHHHHHHHHhCCCCC---CceEEEECCE
Confidence 5678899998874433 46899999999 677788888877 89999999999999998 5899999997
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ++.+...+.+.+||+||+.+...... .+..+..++++++++.++|.+..++.+++ |||
T Consensus 87 ~~---------~i~~~~~l~~~lTV~EnL~l~~~~~~---~~~~e~~e~i~elLe~lgL~~~ld~~~~~--------LSG 146 (549)
T PRK13545 87 AA---------LIAISSGLNGQLTGIENIELKGLMMG---LTKEKIKEIIPEIIEFADIGKFIYQPVKT--------YSS 146 (549)
T ss_pred ee---------eEEeccccCCCCcHHHHHHhhhhhcC---CCHHHHHHHHHHHHHHcCChhHhhCCccc--------CCH
Confidence 52 22234456788999999988654322 22344456678899999999888888776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++||++ +++.++||++++|++|+++..
T Consensus 147 GQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~-~G~TIIIVSHdl-~~i~~l~DrIivL~~GkIv~~ 224 (549)
T PRK13545 147 GMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKE-QGKTIFFISHSL-SQVKSFCTKALWLHYGQVKEY 224 (549)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999976 699999999996 688899999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 225 G~~~el~~ 232 (549)
T PRK13545 225 GDIKEVVD 232 (549)
T ss_pred CCHHHHHh
Confidence 99988764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=301.17 Aligned_cols=198 Identities=23% Similarity=0.246 Sum_probs=162.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++|..++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~~~~~~~~~l~~isl~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~Gl~~~---~~G~i~~~g~~~ 72 (207)
T cd03369 6 EIEVENLSVRYAPDLPPVLKNVSFKV-----KAGEKIGIVGRT-----GAGKSTLILALFRFLEA---EEGKIEIDGIDI 72 (207)
T ss_pred eEEEEEEEEEeCCCCcccccCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCeEEECCEEh
Confidence 46789999997433357999999999 677788888777 89999999999999998 589999999987
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+|||+|++.+++ .||+||+.+... .... .+.+.++ .++.+.+ |
T Consensus 73 ~~~~~~~~~~~i~~v~q~~~~~~-~tv~~~l~~~~~------~~~~----~~~~~l~-------~~~~~~~--------L 126 (207)
T cd03369 73 STIPLEDLRSSLTIIPQDPTLFS-GTIRSNLDPFDE------YSDE----EIYGALR-------VSEGGLN--------L 126 (207)
T ss_pred HHCCHHHHHhhEEEEecCCcccC-ccHHHHhcccCC------CCHH----HHHHHhh-------ccCCCCc--------C
Confidence 43 35678999999998877 499999965321 1111 1233333 2334333 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|+++||||||+|||+.++..+.+.|++++ .|+|+|++||++ +++.. +|++++|++|+++
T Consensus 127 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~--~~~tiii~th~~-~~~~~-~d~v~~l~~g~i~ 202 (207)
T cd03369 127 SQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEF--TNSTILTIAHRL-RTIID-YDKILVMDAGEVK 202 (207)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCH-HHHhh-CCEEEEEECCEEE
Confidence 9999999999999999999999999999999999999999999984 489999999997 46654 9999999999999
Q ss_pred EecCh
Q psy2519 253 FIGSK 257 (622)
Q Consensus 253 ~~G~~ 257 (622)
..|++
T Consensus 203 ~~g~~ 207 (207)
T cd03369 203 EYDHP 207 (207)
T ss_pred ecCCC
Confidence 88763
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=321.34 Aligned_cols=216 Identities=25% Similarity=0.315 Sum_probs=194.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|++|.| |+..++++|||++ ++|+.-+++|.| |||||||+++|.|..+| ++|+|.++|++
T Consensus 3 ~~l~~~~itK~f--~~~~And~V~l~v-----~~GeIHaLLGEN-----GAGKSTLm~iL~G~~~P---~~GeI~v~G~~ 67 (501)
T COG3845 3 PALEMRGITKRF--PGVVANDDVSLSV-----KKGEIHALLGEN-----GAGKSTLMKILFGLYQP---DSGEIRVDGKE 67 (501)
T ss_pred ceEEEeccEEEc--CCEEecCceeeee-----cCCcEEEEeccC-----CCCHHHHHHHHhCcccC---CcceEEECCEE
Confidence 356889999986 6889999999999 677788888887 79999999999999999 59999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
+.- ..+..||+|+|++.|+|++||.||+..+..-......+..+.+++++++.++.||.-..|.++++
T Consensus 68 v~~~sP~dA~~~GIGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~d------- 140 (501)
T COG3845 68 VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD------- 140 (501)
T ss_pred eccCCHHHHHHcCCcEEeeccccccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeec-------
Confidence 753 37889999999999999999999999986543222345667788999999999999889999998
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||-||||||.|-++|..+|++|||||||+-|-|....++++.++++++ +|+|||++||-. .|+.++|||+.+|.+|+
T Consensus 141 -LsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~-~G~tIi~ITHKL-~Ev~~iaDrvTVLR~Gk 217 (501)
T COG3845 141 -LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAA-EGKTIIFITHKL-KEVMAIADRVTVLRRGK 217 (501)
T ss_pred -CCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeccH-HHHHHhhCeeEEEeCCe
Confidence 999999999999999999999999999999999999999999999998 799999999996 79999999999999999
Q ss_pred eEEecC
Q psy2519 251 TAFIGS 256 (622)
Q Consensus 251 iv~~G~ 256 (622)
++..-+
T Consensus 218 vvgt~~ 223 (501)
T COG3845 218 VVGTVD 223 (501)
T ss_pred EEeeec
Confidence 987655
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-37 Score=355.22 Aligned_cols=217 Identities=24% Similarity=0.321 Sum_probs=179.7
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
....++++||+|+|+.++.++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||
T Consensus 452 ~~~~i~~~~vsf~y~~~~~~il~~i~l~i-----~~G~~vaivG~s-----GsGKSTL~~ll~g~~~p---~~G~I~idg 518 (694)
T TIGR01846 452 LRGAITFENIRFRYAPDSPEVLSNLNLDI-----KPGEFIGIVGPS-----GSGKSTLTKLLQRLYTP---QHGQVLVDG 518 (694)
T ss_pred CCCeEEEEEEEEEcCCCCccccccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECC
Confidence 44578999999998655567999999999 678888888776 89999999999999999 489999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~ 162 (622)
++++. .+|+.+|||+|++.+++. |++||+.++.. ..+.+ .+.++++..++ ++..|+.++
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~-ti~eNi~~~~~-----~~~~~----~i~~a~~~~~l~~~i~~lp~gl~t~i~ 588 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSR-SIRDNIALCNP-----GAPFE----HVIHAAKLAGAHDFISELPQGYNTEVG 588 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhh-hHHHHHhcCCC-----CCCHH----HHHHHHHHcChHHHHHhCcCccCcEec
Confidence 99865 478999999999988875 99999987421 11222 23334444443 334566666
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ..+.||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. .++|+|++||++ +.+ +.||+
T Consensus 589 ~----~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~~-~~~d~ 660 (694)
T TIGR01846 589 E----KGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREIC--RGRTVIIIAHRL-STV-RACDR 660 (694)
T ss_pred C----CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHh--CCCEEEEEeCCh-HHH-HhCCE
Confidence 5 134599999999999999999999999999999999999999999999985 479999999997 344 67999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+.+++.
T Consensus 661 ii~l~~G~i~~~g~~~~l~ 679 (694)
T TIGR01846 661 IIVLEKGQIAESGRHEELL 679 (694)
T ss_pred EEEEeCCEEEEeCCHHHHH
Confidence 9999999999999998875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=293.86 Aligned_cols=172 Identities=28% Similarity=0.416 Sum_probs=153.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.| ++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~--~~~~~l~~i~~~i-----~~G~~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~~~ 65 (178)
T cd03229 1 LELKNVSKRY--GQKTVLNDVSLNI-----EAGEIVALLGPS-----GSGKSTLLRCIAGLEEP---DSGSILIDGEDLT 65 (178)
T ss_pred CEEEEEEEEE--CCeEEEeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEcc
Confidence 3578999986 5677999999999 677788888777 89999999999999998 5899999999874
Q ss_pred c------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 98 G------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 98 ~------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
. ..++.++|++|++.+++.+|++||+.+.
T Consensus 66 ~~~~~~~~~~~~i~~~~q~~~~~~~~t~~~~l~~~--------------------------------------------- 100 (178)
T cd03229 66 DLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------------------------------- 100 (178)
T ss_pred ccchhHHHHhhcEEEEecCCccCCCCCHHHheeec---------------------------------------------
Confidence 2 3567899999999999999999987542
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|+|+|++||++ +++.+.||++++|++|+
T Consensus 101 lS~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~-~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 101 LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDL-DEAARLADRVVVLRDGK 178 (178)
T ss_pred CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhcCEEEEEeCCC
Confidence 7999999999999999999999999999999999999999999999874489999999996 67888999999999885
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-37 Score=296.20 Aligned_cols=176 Identities=30% Similarity=0.433 Sum_probs=152.9
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++||++.| ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+++..
T Consensus 1 ~~~~l~~~~--~~~~~l~~~~~~i-----~~G~~~~l~G~n-----GsGKStLl~~i~G~~~~---~~G~v~~~g~~~~~ 65 (180)
T cd03214 1 EVENLSVGY--GGRTVLDDLSLSI-----EAGEIVGILGPN-----GAGKSTLLKTLAGLLKP---SSGEILLDGKDLAS 65 (180)
T ss_pred CeeEEEEEE--CCeeeEeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEECCc
Confidence 578999986 4567999999999 677788888776 89999999999999998 58999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.+++.++|++| +++.+||.+..++.+.+ |||
T Consensus 66 ~~~~~~~~~i~~~~q-------------------------------------~l~~~gl~~~~~~~~~~--------LS~ 100 (180)
T cd03214 66 LSPKELARKIAYVPQ-------------------------------------ALELLGLAHLADRPFNE--------LSG 100 (180)
T ss_pred CCHHHHHHHHhHHHH-------------------------------------HHHHcCCHhHhcCCccc--------CCH
Confidence 24566888888 56677777666666655 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++++|||||+|||+.++..+.+.|++++++.|.|+|++||++ +++.++||++++|++|++++.
T Consensus 101 G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999999999874489999999996 678899999999999999865
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 180 ~ 180 (180)
T cd03214 180 G 180 (180)
T ss_pred C
Confidence 4
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=292.54 Aligned_cols=169 Identities=28% Similarity=0.428 Sum_probs=149.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|..++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSI-----EPGESLAIIGPS-----GSGKSTLARLILGLLRP---TSGRVRLDGADIS 67 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCeEEECCEEcc
Confidence 3578999987433356999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. .+++.++|++|++.+++. ||+||+ ||
T Consensus 68 ~~~~~~~~~~i~~~~q~~~~~~~-tv~~~l------------------------------------------------LS 98 (173)
T cd03246 68 QWDPNELGDHVGYLPQDDELFSG-SIAENI------------------------------------------------LS 98 (173)
T ss_pred cCCHHHHHhheEEECCCCccccC-cHHHHC------------------------------------------------cC
Confidence 4 357789999999888874 999987 69
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||++|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|+|+|++||++ +.+ +.||++++|++|++
T Consensus 99 ~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 99 GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA-AGATRIVIAHRP-ETL-ASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999999999999999999986 699999999996 455 68999999999975
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-37 Score=340.55 Aligned_cols=214 Identities=18% Similarity=0.246 Sum_probs=179.9
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++. .+++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 258 l~~~~~~~~------~~l~~isl~i-----~~Ge~~~iiG~N-----GsGKSTLlk~l~G~~~p---~~G~i~~~g~~~~ 318 (501)
T PRK11288 258 LRLDGLKGP------GLREPISFSV-----RAGEIVGLFGLV-----GAGRSELMKLLYGATRR---TAGQVYLDGKPID 318 (501)
T ss_pred EEEeccccC------CcccceeEEE-----eCCcEEEEEcCC-----CCCHHHHHHHHcCCCcC---CCceEEECCEECC
Confidence 556677642 4799999999 678888888887 79999999999999998 5899999999875
Q ss_pred c-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCC-Ccc--ccHHHHHHHHHHHHHHhCCC-cccCCccCCcC
Q psy2519 98 G-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKL-DRR--VKAYQRIALINSLLIELGLM-NSQHTRIGSSS 165 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~-~~~--~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~ 165 (622)
. ..++.+||++|++ .+++.+||.||+.+...... ... ....+.+++++++++.+++. +..++.+++
T Consensus 319 ~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 396 (501)
T PRK11288 319 IRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMN-- 396 (501)
T ss_pred CCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCcccc--
Confidence 2 2457899999985 48999999999987532111 000 01223345678999999994 678888877
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+||++|+.+|++|||||||+|||+.++.++.++|+++++ +|.|||++|||+ +++.++||++++
T Consensus 397 ------LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~-~g~tviivsHd~-~~~~~~~d~i~~ 468 (501)
T PRK11288 397 ------LSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAA-QGVAVLFVSSDL-PEVLGVADRIVV 468 (501)
T ss_pred ------CCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHhhCCEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 789999999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 469 l~~g~i~~~~~~~~~ 483 (501)
T PRK11288 469 MREGRIAGELAREQA 483 (501)
T ss_pred EECCEEEEEEccccC
Confidence 999999999987753
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-36 Score=294.49 Aligned_cols=178 Identities=23% Similarity=0.316 Sum_probs=151.7
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc------ccccc
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG------KFRSA 103 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~------~~r~~ 103 (622)
|+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.. ..++.
T Consensus 3 ~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~ 69 (190)
T TIGR01166 3 GGPEVLKGLNFAA-----ERGEVLALLGAN-----GAGKSTLLLHLNGLLRP---QSGAVLIDGEPLDYSRKGLLERRQR 69 (190)
T ss_pred CccceecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceeEEECCEEccccccchHHHHhh
Confidence 5667999999999 677788888777 89999999999999998 58999999998741 24678
Q ss_pred EEEEecCCC-CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH
Q psy2519 104 CGFMYQHDL-FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 104 igyV~Q~~~-l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
+||++|++. .+...||+||+.+...... ....+..++++++++.+||.+..++.+.+ ||||||||++|
T Consensus 70 i~~~~q~~~~~~~~~tv~~nl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~qrv~l 138 (190)
T TIGR01166 70 VGLVFQDPDDQLFAADVDQDVAFGPLNLG---LSEAEVERRVREALTAVGASGLRERPTHC--------LSGGEKKRVAI 138 (190)
T ss_pred EEEEecChhhccccccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCchhhhhCChhh--------CCHHHHHHHHH
Confidence 999999973 3335799999998754321 22334456788999999998888888766 99999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 183 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
||||+.+|++++|||||+|||+.++..+.+.|+++++ +|+|||++||++
T Consensus 139 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~-~~~tili~sH~~ 187 (190)
T TIGR01166 139 AGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRA-EGMTVVISTHDV 187 (190)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-cCCEEEEEeecc
Confidence 9999999999999999999999999999999999987 699999999996
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-36 Score=339.24 Aligned_cols=214 Identities=17% Similarity=0.213 Sum_probs=178.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++|+++. +++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 268 ~l~~~~l~~~-------~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~Gl~~p---~~G~i~~~g~~i 327 (510)
T PRK15439 268 VLTVEDLTGE-------GFRNISLEV-----RAGEILGLAGVV-----GAGRTELAETLYGLRPA---RGGRIMLNGKEI 327 (510)
T ss_pred eEEEeCCCCC-------CccceeEEE-----cCCcEEEEECCC-----CCCHHHHHHHHcCCCCC---CCcEEEECCEEC
Confidence 5778888842 589999999 677788888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCC
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~ 167 (622)
.. ..++.++||+|++ .+++.+|+.||+...............+.+++++++++.+||. +..++++++
T Consensus 328 ~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~---- 403 (510)
T PRK15439 328 NALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAART---- 403 (510)
T ss_pred CCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCcccc----
Confidence 53 1356799999984 5889999999996431110000001122345688999999997 678888777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++++ +|.|||++|||+ +++.++|||+++|+
T Consensus 404 ----LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~-~g~tiIivsHd~-~~i~~~~d~i~~l~ 477 (510)
T PRK15439 404 ----LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAA-QNVAVLFISSDL-EEIEQMADRVLVMH 477 (510)
T ss_pred ----CCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHh-CCCEEEEECCCH-HHHHHhCCEEEEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68999999999999
Q ss_pred CCceEEecChHHH
Q psy2519 248 DSRTAFIGSKDAA 260 (622)
Q Consensus 248 ~G~iv~~G~~~~~ 260 (622)
+|+++..|+++++
T Consensus 478 ~G~i~~~~~~~~~ 490 (510)
T PRK15439 478 QGEISGALTGAAI 490 (510)
T ss_pred CCEEEEEEccccC
Confidence 9999999877643
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-37 Score=355.01 Aligned_cols=214 Identities=19% Similarity=0.257 Sum_probs=176.0
Q ss_pred CCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
..++++||+|+|+.. +.++|+++|+++ ++|+.++++|++ |||||||+++|.|+.+| .+|+|.+||+
T Consensus 477 ~~I~~~nVsf~Y~~~~~~~vL~~isl~i-----~~Ge~vaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~idg~ 543 (711)
T TIGR00958 477 GLIEFQDVSFSYPNRPDVPVLKGLTFTL-----HPGEVVALVGPS-----GSGKSTVAALLQNLYQP---TGGQVLLDGV 543 (711)
T ss_pred CeEEEEEEEEECCCCCCCccccCceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCEEEECCE
Confidence 458899999998533 367999999999 788888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
|+.+ .+|++++||+|++.+++. |++|||.++..- .+ ++++.++++..++.+ ..|+.+|+
T Consensus 544 ~i~~~~~~~lr~~i~~v~Q~~~lF~g-TIreNI~~g~~~-----~~----~e~i~~al~~a~l~~~i~~lp~GldT~ige 613 (711)
T TIGR00958 544 PLVQYDHHYLHRQVALVGQEPVLFSG-SVRENIAYGLTD-----TP----DEEIMAAAKAANAHDFIMEFPNGYDTEVGE 613 (711)
T ss_pred EHHhcCHHHHHhhceEEecCcccccc-CHHHHHhcCCCC-----CC----HHHHHHHHHHcCCHHHHHhCCCccCCcccC
Confidence 9865 478999999999998875 999999886321 12 123445566666543 35666665
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++|++|+||||||+||+.+...+.+ .. .. .++|+|++||++ +..+.+|+|
T Consensus 614 ----~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~~--~~-~~~TvIiItHrl--~~i~~aD~I 683 (711)
T TIGR00958 614 ----KGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-SR--SR-ASRTVLLIAHRL--STVERADQI 683 (711)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-hh--cc-CCCeEEEEeccH--HHHHhCCEE
Confidence 234599999999999999999999999999999999999998888 22 22 579999999997 345679999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+.+++.+
T Consensus 684 ivL~~G~ive~Gt~~eL~~ 702 (711)
T TIGR00958 684 LVLKKGSVVEMGTHKQLME 702 (711)
T ss_pred EEEECCEEEEeeCHHHHHh
Confidence 9999999999999998763
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-36 Score=293.10 Aligned_cols=175 Identities=29% Similarity=0.449 Sum_probs=151.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|...+.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~g~~~~ 67 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLEL-----KQGEKIALLGRS-----GSGKSTLLQLLTGDLKP---QQGEITLDGVPVS 67 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCEEEECCEEHH
Confidence 3578999987322236999999999 677788888777 89999999999999998 5899999999875
Q ss_pred c---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 98 G---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 98 ~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
. .+++.++|++|++.+++ .|++||+ +.+ |||
T Consensus 68 ~~~~~~~~~i~~~~q~~~~~~-~tv~~~i-------------------------------------~~~--------LS~ 101 (178)
T cd03247 68 DLEKALSSLISVLNQRPYLFD-TTLRNNL-------------------------------------GRR--------FSG 101 (178)
T ss_pred HHHHHHHhhEEEEccCCeeec-ccHHHhh-------------------------------------ccc--------CCH
Confidence 3 35778999999988776 6999987 333 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
|||||++|||+|+.+|++|+|||||+|||+.++..+.+.|++++ ++.|||++||++ +++ +.+|++++|++|++++.
T Consensus 102 G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~--~~~tii~~sh~~-~~~-~~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 102 GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL--KDKTLIWITHHL-TGI-EHMDKILFLENGKIIMQ 177 (178)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999995 479999999997 466 47999999999999876
Q ss_pred c
Q psy2519 255 G 255 (622)
Q Consensus 255 G 255 (622)
|
T Consensus 178 ~ 178 (178)
T cd03247 178 G 178 (178)
T ss_pred C
Confidence 4
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-37 Score=346.36 Aligned_cols=217 Identities=23% Similarity=0.321 Sum_probs=181.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.++++||+|+|...+.++++++|+++ ++|+.+.|+|++ |||||||+++|+|+.+| .+|+|.+||.
T Consensus 328 ~~~i~~~~v~f~y~~~~~~il~~inl~i-----~~G~~v~IvG~s-----GsGKSTLl~lL~gl~~~---~~G~I~i~g~ 394 (571)
T TIGR02203 328 RGDVEFRNVTFRYPGRDRPALDSISLVI-----EPGETVALVGRS-----GSGKSTLVNLIPRFYEP---DSGQILLDGH 394 (571)
T ss_pred CCeEEEEEEEEEcCCCCCccccCeeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCeEEECCE
Confidence 3568899999998544567999999999 788888888776 89999999999999999 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++++ .+++.++||+|++.+++. |++|||.++.. +..++ ++++++++.+|+. +..|+.+++
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~~~lf~~-Ti~~Ni~~~~~----~~~~~----~~i~~~l~~~~l~~~i~~lp~gldt~i~~ 465 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQDVVLFND-TIANNIAYGRT----EQADR----AEIERALAAAYAQDFVDKLPLGLDTPIGE 465 (571)
T ss_pred eHHhcCHHHHHhhceEEccCcccccc-cHHHHHhcCCC----CCCCH----HHHHHHHHHcChHHHHHhCcCcccceecC
Confidence 9864 478899999999988866 99999987631 01122 2345566666653 345666765
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..+.||||||||++|||+++.+|++++|||||++||+.+..++.+.|++++ .++|+|++||++ ...+.||+|
T Consensus 466 ----~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~--~~~tiIiitH~~--~~~~~~D~i 537 (571)
T TIGR02203 466 ----NGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLM--QGRTTLVIAHRL--STIEKADRI 537 (571)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHh--CCCEEEEEehhh--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999986 379999999997 556889999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 538 i~l~~g~i~~~g~~~~l~ 555 (571)
T TIGR02203 538 VVMDDGRIVERGTHNELL 555 (571)
T ss_pred EEEeCCEEEeeCCHHHHH
Confidence 999999999999999875
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=344.57 Aligned_cols=215 Identities=20% Similarity=0.264 Sum_probs=178.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|++|+|+.++.++++++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||++
T Consensus 312 ~~I~~~~v~~~y~~~~~~~l~~i~~~i-----~~G~~~~ivG~s-----GsGKSTLl~ll~g~~~p---~~G~i~~~g~~ 378 (569)
T PRK10789 312 GELDVNIRQFTYPQTDHPALENVNFTL-----KPGQMLGICGPT-----GSGKSTLLSLIQRHFDV---SEGDIRFHDIP 378 (569)
T ss_pred CcEEEEEEEEECCCCCCccccCeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CCCEEEECCEE
Confidence 457899999998655677999999999 678888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
+.. .+|+.++||+|++.+++. |++||+.++... .+.+ .++++++..++ ++..|+.+++
T Consensus 379 ~~~~~~~~~~~~i~~v~q~~~lf~~-ti~~Ni~~~~~~-----~~~~----~~~~~~~~~~l~~~i~~lp~gl~t~~~~- 447 (569)
T PRK10789 379 LTKLQLDSWRSRLAVVSQTPFLFSD-TVANNIALGRPD-----ATQQ----EIEHVARLASVHDDILRLPQGYDTEVGE- 447 (569)
T ss_pred HhhCCHHHHHhheEEEccCCeeccc-cHHHHHhcCCCC-----CCHH----HHHHHHHHcCCHHHHHhCcCcccceecC-
Confidence 864 478899999999998875 999999875311 1222 23344444444 3445666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++++|||||++||+.+..++.+.|+++. .|+|+|++||++ +. .+.+|+++
T Consensus 448 ---~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tii~itH~~-~~-~~~~d~i~ 520 (569)
T PRK10789 448 ---RGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG--EGRTVIISAHRL-SA-LTEASEIL 520 (569)
T ss_pred ---CCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHh--CCCEEEEEecch-hH-HHcCCEEE
Confidence 124599999999999999999999999999999999999999999999985 489999999997 34 46799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 521 ~l~~G~i~~~g~~~~l~ 537 (569)
T PRK10789 521 VMQHGHIAQRGNHDQLA 537 (569)
T ss_pred EEeCCEEEEecCHHHHH
Confidence 99999999999998775
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=340.78 Aligned_cols=214 Identities=20% Similarity=0.233 Sum_probs=173.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+ ++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||.+
T Consensus 333 ~~i~~~~v~~~y~-~~~~~l~~i~~~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~~ 398 (585)
T TIGR01192 333 GAVEFRHITFEFA-NSSQGVFDVSFEA-----KAGQTVAIVGPT-----GAGKTTLINLLQRVYDP---TVGQILIDGID 398 (585)
T ss_pred CeEEEEEEEEECC-CCCccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHccCCCC---CCCEEEECCEE
Confidence 4588999999984 3356899999999 678888888776 89999999999999999 59999999998
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~v~~~ 164 (622)
+.. .+++.++||+|++.+++ .|++||+.++... .++++. .+.++..+ +.+..|+.+++
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~-~ti~~Ni~~~~~~-----~~~~~~----~~a~~~~~~~~~i~~l~~g~~t~~~~- 467 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFN-RSIRENIRLGREG-----ATDEEV----YEAAKAAAAHDFILKRSNGYDTLVGE- 467 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCc-ccHHHHHhcCCCC-----CCHHHH----HHHHHHhCcHHHHHhccccccchhcC-
Confidence 864 47889999999998886 5999999886311 122222 22222222 22334555554
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. .++|+|++||++ +.+ +.||+++
T Consensus 468 ---~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~--~~~tvI~isH~~-~~~-~~~d~i~ 540 (585)
T TIGR01192 468 ---RGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALR--KNRTTFIIAHRL-STV-RNADLVL 540 (585)
T ss_pred ---CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCh-HHH-HcCCEEE
Confidence 123499999999999999999999999999999999999999999999885 489999999997 455 6799999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+.+++.
T Consensus 541 ~l~~G~i~~~g~~~~l~ 557 (585)
T TIGR01192 541 FLDQGRLIEKGSFQELI 557 (585)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999988765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=299.81 Aligned_cols=202 Identities=17% Similarity=0.171 Sum_probs=164.9
Q ss_pred ccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccE
Q psy2519 25 FSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC 104 (622)
Q Consensus 25 ~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~i 104 (622)
|+|+ +....+.+++|++.-+.-.+|+.++++|+| ||||||||++|+|+.+| .+|+|.++|+ .+
T Consensus 1 ~~y~-~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~N-----GsGKSTLlk~L~G~~~p---~~G~i~~~g~--------~i 63 (246)
T cd03237 1 YTYP-TMKKTLGEFTLEVEGGSISESEVIGILGPN-----GIGKTTFIKMLAGVLKP---DEGDIEIELD--------TV 63 (246)
T ss_pred CCCc-ccccccCcEEEEEecCCcCCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCCeEEECCc--------eE
Confidence 3453 444577888888854444577888888887 89999999999999998 4899999985 58
Q ss_pred EEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 105 GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 105 gyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
+|++|+....+.+||+|++.+...... . ....++++++.++|.+..++.+++ |||||||||+||+
T Consensus 64 ~~~~q~~~~~~~~tv~e~l~~~~~~~~----~---~~~~~~~~l~~l~l~~~~~~~~~~--------LSgGe~qrv~iar 128 (246)
T cd03237 64 SYKPQYIKADYEGTVRDLLSSITKDFY----T---HPYFKTEIAKPLQIEQILDREVPE--------LSGGELQRVAIAA 128 (246)
T ss_pred EEecccccCCCCCCHHHHHHHHhhhcc----c---cHHHHHHHHHHcCCHHHhhCChhh--------CCHHHHHHHHHHH
Confidence 999999887788999999976533211 1 112356889999998888888776 9999999999999
Q ss_pred HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE--EecChHH
Q psy2519 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA--FIGSKDA 259 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv--~~G~~~~ 259 (622)
+|+.+|+++||||||++||+.++..+.+.|++++++.|+|||++||++ +++..+||++++|+++..+ ..+++.+
T Consensus 129 aL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~-~~~~~~~d~i~~l~~~~~~~~~~~~~~~ 204 (246)
T cd03237 129 CLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDI-IMIDYLADRLIVFEGEPSVNGVANPPQS 204 (246)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEcCCCeeEEEeCCchH
Confidence 999999999999999999999999999999999875689999999996 6888899999999765433 3444544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=342.46 Aligned_cols=215 Identities=21% Similarity=0.298 Sum_probs=178.1
Q ss_pred CCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 16 NNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
..++++||+|+|+.++ .++++++|+++ ++|+.++++|++ |||||||+|+|+|+.+| .+|+|.+||.
T Consensus 336 ~~i~~~~v~f~y~~~~~~~iL~~inl~i-----~~Ge~i~IvG~s-----GsGKSTLlklL~gl~~p---~~G~I~i~g~ 402 (576)
T TIGR02204 336 GEIEFEQVNFAYPARPDQPALDGLNLTV-----RPGETVALVGPS-----GAGKSTLFQLLLRFYDP---QSGRILLDGV 402 (576)
T ss_pred ceEEEEEEEEECCCCCCCccccceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHhccCC---CCCEEEECCE
Confidence 4588999999985433 57999999999 788888888776 89999999999999999 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++++ .+++.+||++|++.+++. |++|||.++.. ..+. +++.++++.+++.+ ..|+.+++
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~~~lf~~-Ti~~Ni~~~~~-----~~~~----~~~~~~l~~~~l~~~i~~l~~gl~t~i~~ 472 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQDPVLFAA-SVMENIRYGRP-----DATD----EEVEAAARAAHAHEFISALPEGYDTYLGE 472 (576)
T ss_pred EHHhcCHHHHHHhceEEccCCccccc-cHHHHHhcCCC-----CCCH----HHHHHHHHHcCcHHHHHhCCCCCCceeCC
Confidence 9864 478899999999988866 99999987521 1121 23455566665532 34555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++||||++.+|++|+|||||++||+.++..+.+.|+++. .++|+|++||++ +..+.+|++
T Consensus 473 ----~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~--~~~t~IiitH~~--~~~~~~d~v 544 (576)
T TIGR02204 473 ----RGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLM--KGRTTLIIAHRL--ATVLKADRI 544 (576)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHh--CCCEEEEEecch--HHHHhCCEE
Confidence 234599999999999999999999999999999999999999999999985 479999999997 445789999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|+++..|+.+++.
T Consensus 545 i~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 545 VVMDQGRIVAQGTHAELI 562 (576)
T ss_pred EEEECCEEEeeecHHHHH
Confidence 999999999999988764
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=279.14 Aligned_cols=203 Identities=24% Similarity=0.342 Sum_probs=176.2
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++++.. ..++.++|+++||++ .+|+...|.|| ||||||||+|+++.+..| ++|++++.|++++.
T Consensus 5 e~kq~~y--~a~~a~il~~isl~v-----~~Ge~iaitGP-----SG~GKStllk~va~Lisp---~~G~l~f~Ge~vs~ 69 (223)
T COG4619 5 ELKQVGY--LAGDAKILNNISLSV-----RAGEFIAITGP-----SGCGKSTLLKIVASLISP---TSGTLLFEGEDVST 69 (223)
T ss_pred HHHHHHh--hcCCCeeecceeeee-----cCCceEEEeCC-----CCccHHHHHHHHHhccCC---CCceEEEcCccccc
Confidence 3444444 357888999999999 57777777766 489999999999999999 59999999999975
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccC
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLS 173 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLS 173 (622)
.+|+.++|+.|.+.||+. ||++|+.|.-+.+..+. .+++..+.|++++|.+. .++.+.+ ||
T Consensus 70 ~~pea~Rq~VsY~~Q~paLfg~-tVeDNlifP~~~r~rr~-----dr~aa~~llar~~l~~~~L~k~it~--------lS 135 (223)
T COG4619 70 LKPEAYRQQVSYCAQTPALFGD-TVEDNLIFPWQIRNRRP-----DRAAALDLLARFALPDSILTKNITE--------LS 135 (223)
T ss_pred cChHHHHHHHHHHHcCcccccc-chhhccccchHHhccCC-----ChHHHHHHHHHcCCchhhhcchhhh--------cc
Confidence 489999999999999998 99999999887764321 24456789999999764 5677766 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||++|+|.|..-|+|||||||||+||+.+.+.|-++|.++.+++...++.+|||+ ++..+.+|+++-+..|++
T Consensus 136 GGE~QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~-dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 136 GGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDK-DQAIRHADKVITLQPGHA 212 (223)
T ss_pred chHHHHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecCh-HHHhhhhheEEEeccCcc
Confidence 99999999999999999999999999999999999999999999877899999999997 677789999999999876
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=283.62 Aligned_cols=220 Identities=21% Similarity=0.274 Sum_probs=193.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC-E
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG-K 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G-~ 94 (622)
..++++||+.+ ||+-.++.++|+++ .+|+-.++|||| ||||||+|++|+|..+| .+|+++++| .
T Consensus 4 ~iL~~~~vsVs--F~GF~Aln~ls~~v-----~~Gelr~lIGpN-----GAGKTT~mD~ItGKtrp---~~G~v~f~g~~ 68 (249)
T COG4674 4 IILYLDGVSVS--FGGFKALNDLSFSV-----DPGELRVLIGPN-----GAGKTTLMDVITGKTRP---QEGEVLFDGDT 68 (249)
T ss_pred ceEEEeceEEE--EcceeeeeeeEEEe-----cCCeEEEEECCC-----CCCceeeeeeecccCCC---CcceEEEcCch
Confidence 34678999998 58888999999999 678888888888 79999999999999999 589999999 7
Q ss_pred ecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-----cccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 95 PVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-----RVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-----~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
++++ ..|..||--||.+..|+.+||+|||..+......- .....+.+++++++|+..||.+.+|...+.
T Consensus 69 dl~~~~e~~IAr~GIGRKFQ~PtVfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~- 147 (249)
T COG4674 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAAL- 147 (249)
T ss_pred hhccCCHHHHHHhccCccccCCeehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhh-
Confidence 7765 25788999999999999999999999875432110 011234467899999999999999999888
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||.||||++.|++-++.+|++|+||||++|+--....+.-++|++++. +.+|+++.||+ ..+.+++|+|.
T Consensus 148 -------LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~--~hsilVVEHDM-~Fvr~~A~~VT 217 (249)
T COG4674 148 -------LSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAG--KHSILVVEHDM-GFVREIADKVT 217 (249)
T ss_pred -------hccchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhc--CceEEEEeccH-HHHHHhhheeE
Confidence 999999999999999999999999999999999999999999999985 68999999996 79999999999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|.+...|+.+++.
T Consensus 218 Vlh~G~VL~EGsld~v~ 234 (249)
T COG4674 218 VLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred EEeccceeecccHHHhh
Confidence 99999999999999874
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=338.39 Aligned_cols=218 Identities=24% Similarity=0.325 Sum_probs=189.5
Q ss_pred CcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++|+++.|..+ ..++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||+
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~Gl~~~---~~G~i~~~g~ 70 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDI-----YAGEMVAIVGAS-----GSGKSTLMNILGCLDKP---TSGTYRVAGQ 70 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECCE
Confidence 57899999998533 357999999999 678888888887 89999999999999998 5899999999
Q ss_pred ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 95 PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
++.. + .++.++|++|++.+++.+|+.||+.+...... ....+.++++.++++.+||.+..|+.+++
T Consensus 71 ~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~---~~~~~~~~~~~~~l~~lgl~~~~~~~~~~--- 144 (648)
T PRK10535 71 DVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAG---LERKQRLLRAQELLQRLGLEDRVEYQPSQ--- 144 (648)
T ss_pred EcCcCCHHHHHHHHhccEEEEeCCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCChhhhcCCccc---
Confidence 9764 1 25789999999999999999999998654322 23345566788999999999888888766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||++|||+|+.+|++|+|||||+|||+.++..+.+.++++++ .|+|+|++||++ +.+ +.|||+++|
T Consensus 145 -----LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~-~g~tilivsH~~-~~~-~~~d~i~~l 216 (648)
T PRK10535 145 -----LSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRD-RGHTVIIVTHDP-QVA-AQAERVIEI 216 (648)
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEECCCH-HHH-HhCCEEEEE
Confidence 999999999999999999999999999999999999999999999986 699999999996 444 679999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|++++..
T Consensus 217 ~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 217 RDGEIVRNPPAQEKV 231 (648)
T ss_pred ECCEEEeecCccccc
Confidence 999999999998764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=367.85 Aligned_cols=221 Identities=23% Similarity=0.338 Sum_probs=180.8
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----------
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD----------- 82 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~----------- 82 (622)
...++++||+|+|+.+ +.++|+++|+++ ++|+.++++|++ |||||||+++|.|+..|.
T Consensus 1163 ~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i-----~~G~~vAIVG~S-----GsGKSTl~~LL~r~ydp~~~~~~~~~~~~ 1232 (1466)
T PTZ00265 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSC-----DSKKTTAIVGET-----GSGKSTVMSLLMRFYDLKNDHHIVFKNEH 1232 (1466)
T ss_pred CceEEEEEEEEECCCCCCCccccCeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHHhCCCcccccccccccc
Confidence 3568999999999643 458999999999 678888888775 899999999999999872
Q ss_pred ----------------------------------------CceeeEEEECCEecCc----cccccEEEEecCCCCCCCCC
Q psy2519 83 ----------------------------------------CIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 83 ----------------------------------------~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lT 118 (622)
...+|+|++||.++.. .+|+.+|||+|++.||+ .|
T Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~-gT 1311 (1466)
T PTZ00265 1233 TNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFN-MS 1311 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccc-cc
Confidence 0148999999999865 48999999999999885 59
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-------CCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-------GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-------gL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
++|||.++.. ..+.++ ++++++.. .|++..|+.+|+ ....||||||||++|||||+.+|+
T Consensus 1312 IreNI~~g~~-----~at~ee----I~~A~k~A~l~~fI~~LP~GydT~VGe----~G~~LSGGQkQRIaIARALlr~p~ 1378 (1466)
T PTZ00265 1312 IYENIKFGKE-----DATRED----VKRACKFAAIDEFIESLPNKYDTNVGP----YGKSLSGGQKQRIAIARALLREPK 1378 (1466)
T ss_pred HHHHHhcCCC-----CCCHHH----HHHHHHHcCCHHHHHhCccccCCccCC----CCCcCCHHHHHHHHHHHHHhcCCC
Confidence 9999999732 112222 33333333 345667888886 234599999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC----CceE-EecChHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD----SRTA-FIGSKDAAL 261 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~----G~iv-~~G~~~~~~ 261 (622)
|||||||||+||+.+...|.+.|+++.+..++|+|+++|.+ ...+.||+|++|++ |+++ +.|+.++++
T Consensus 1379 ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRl--sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl 1451 (1466)
T PTZ00265 1379 ILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRI--ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELL 1451 (1466)
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechH--HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHH
Confidence 99999999999999999999999998632589999999996 34578999999999 9955 899999875
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=293.06 Aligned_cols=193 Identities=22% Similarity=0.287 Sum_probs=150.0
Q ss_pred cccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++++||++.|..++ .++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i-----~~G~~~~i~G~n-----G~GKSTLl~~i~G~~~~---~~G~i~~~g- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEV-----PKGELVAIVGPV-----GSGKSSLLSALLGELEK---LSGSVSVPG- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCcCCC---CCCeEEEcC-
Confidence 36899999974322 36999999999 678888888777 89999999999999998 589999998
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHH-----HHHHHHHHh--CCCcccCCccCCcCCC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA-----LINSLLIEL--GLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~-----~v~~~l~~l--gL~~~~~~~v~~~~~~ 167 (622)
.+||++|++.++ ..|++||+.+.... ......+ .+.+.++.+ ++....+....
T Consensus 67 --------~i~~~~q~~~l~-~~t~~enl~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----- 126 (204)
T cd03250 67 --------SIAYVSQEPWIQ-NGTIRENILFGKPF------DEERYEKVIKACALEPDLEILPDGDLTEIGEKGI----- 126 (204)
T ss_pred --------EEEEEecCchhc-cCcHHHHhccCCCc------CHHHHHHHHHHcCcHHHHHhccCcccceecCCCC-----
Confidence 599999999887 46999999885321 1111111 011222222 22222333333
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||++|||+|+.+|++++|||||+|||+.++..+.+ +++++++ .|.|||++||++ +.+.. +|++++|
T Consensus 127 ---~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~-~~~tvi~~sh~~-~~~~~-~d~i~~l 200 (204)
T cd03250 127 ---NLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLL-NNKTRILVTHQL-QLLPH-ADQIVVL 200 (204)
T ss_pred ---cCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcc-CCCEEEEEeCCH-HHHhh-CCEEEEE
Confidence 399999999999999999999999999999999999999998 5677766 589999999996 56665 9999999
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
++|+
T Consensus 201 ~~G~ 204 (204)
T cd03250 201 DNGR 204 (204)
T ss_pred eCCC
Confidence 9985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-35 Score=288.53 Aligned_cols=191 Identities=17% Similarity=0.195 Sum_probs=159.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++| ++..+++ +|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.++.
T Consensus 2 l~~~~l~~~~--~~~~l~~-vs~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~g~~i~ 65 (195)
T PRK13541 2 LSLHQLQFNI--EQKNLFD-LSITF-----LPSAITYIKGAN-----GCGKSSLLRMIAGIMQP---SSGNIYYKNCNIN 65 (195)
T ss_pred eEEEEeeEEE--CCcEEEE-EEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCcccC
Confidence 5689999997 4555555 99998 677788888777 89999999999999998 5899999999875
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
...++.++|++|+..+++.+||+||+.+...... ..++++++++.+++.+..++.+++ ||||||
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~tv~~~l~~~~~~~~--------~~~~~~~~l~~~~l~~~~~~~~~~--------LS~G~~ 129 (195)
T PRK13541 66 NIAKPYCTYIGHNLGLKLEMTVFENLKFWSEIYN--------SAETLYAAIHYFKLHDLLDEKCYS--------LSSGMQ 129 (195)
T ss_pred hhhhhhEEeccCCcCCCccCCHHHHHHHHHHhcc--------cHHHHHHHHHHcCCHhhhccChhh--------CCHHHH
Confidence 4334569999999888889999999988653321 123567889999998878887766 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||++|||+|+.+|++++|||||+|||+.++..+.+.|++.++ .|.|+|++||++ +.+ +.+|-+
T Consensus 130 ~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~i-~~~~~~ 192 (195)
T PRK13541 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN-SGGIVLLSSHLE-SSI-KSAQIL 192 (195)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCc-ccc-chhhee
Confidence 999999999999999999999999999999999999988765 689999999997 344 346544
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=329.37 Aligned_cols=210 Identities=19% Similarity=0.268 Sum_probs=174.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|.
T Consensus 1 ml~i~~ls~~~--~~~~il~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~~-- 63 (530)
T PRK15064 1 MLSTANITMQF--GAKPLFENISVKF-----GGGNRYGLIGAN-----GCGKSTFMKILGGDLEP---SAGNVSLDPN-- 63 (530)
T ss_pred CEEEEEEEEEe--CCcEeEeCCEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCC--
Confidence 36789999986 6678999999999 678888888887 89999999999999998 4899999873
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHH-cC-----------CCc-cc----------------cHHHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-LK-----------LDR-RV----------------KAYQRIALINSL 147 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l~-----------~~~-~~----------------~~~~~~~~v~~~ 147 (622)
+.+|||+|++.+++.+||+|++.++.. .. .+. .. ...+.+++++++
T Consensus 64 -----~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (530)
T PRK15064 64 -----ERLGKLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGEL 138 (530)
T ss_pred -----CEEEEEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHH
Confidence 459999999989999999999987531 00 000 00 001224568899
Q ss_pred HHHhCCCccc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEE
Q psy2519 148 LIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226 (622)
Q Consensus 148 l~~lgL~~~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi 226 (622)
++.+||.+.. ++.+++ |||||||||+||++|+.+|++|||||||+|||+.++..+.+.|++ .|.|||
T Consensus 139 l~~~gl~~~~~~~~~~~--------LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~~~tii 206 (530)
T PRK15064 139 LLGVGIPEEQHYGLMSE--------VAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----RNSTMI 206 (530)
T ss_pred HHhCCCChhHhcCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----CCCeEE
Confidence 9999997643 456666 999999999999999999999999999999999999999999863 589999
Q ss_pred EEeccCcHHHHhhccceeeecCCce-EEecChHHHH
Q psy2519 227 CTIHQPSSELIDMFDKIILLADSRT-AFIGSKDAAL 261 (622)
Q Consensus 227 ~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~~~ 261 (622)
++||++ +.+.++||++++|++|++ ++.|++++..
T Consensus 207 ivsHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 241 (530)
T PRK15064 207 IISHDR-HFLNSVCTHMADLDYGELRVYPGNYDEYM 241 (530)
T ss_pred EEeCCH-HHHHhhcceEEEEeCCEEEEecCCHHHHH
Confidence 999996 688899999999999999 5889988664
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=281.88 Aligned_cols=218 Identities=24% Similarity=0.304 Sum_probs=178.7
Q ss_pred CcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
++++.|+.+.+..| +++++++++|++ ..++-+.+||.| |||||||+|+|+|.+.| ++|+|.++|
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I-----~~g~FvtViGsN-----GAGKSTlln~iaG~l~~---t~G~I~Idg 67 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEI-----AEGDFVTVIGSN-----GAGKSTLLNAIAGDLKP---TSGQILIDG 67 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceee-----cCCceEEEEcCC-----CccHHHHHHHhhCcccc---CCceEEECc
Confidence 35677777776555 378999999999 444455555555 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccH---HHHHHHHHHHHHHh--CCCcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKA---YQRIALINSLLIEL--GLMNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~---~~~~~~v~~~l~~l--gL~~~~~~~v~ 162 (622)
.++++ +....++-|||++ ...|.||++||+..+..-...+.... ..+++.-.+-++.+ ||++..+++++
T Consensus 68 ~dVtk~~~~~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~ig 147 (263)
T COG1101 68 VDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIG 147 (263)
T ss_pred eecccCCHHHHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhh
Confidence 99986 2446678899997 48999999999999764322122221 23344445566666 55788899988
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
- |||||||-+++++|-++.|++|||||-|++|||.++..+++.-.++.++.+.|.+||||++ +++.++.+|
T Consensus 148 l--------LSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm-~~Al~yG~R 218 (263)
T COG1101 148 L--------LSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNM-EDALDYGNR 218 (263)
T ss_pred h--------ccchHHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccH-HHHHhhCCe
Confidence 8 9999999999999999999999999999999999999999999999988899999999996 678899999
Q ss_pred eeeecCCceEEecC
Q psy2519 243 IILLADSRTAFIGS 256 (622)
Q Consensus 243 v~~L~~G~iv~~G~ 256 (622)
.++|++|+||.+-.
T Consensus 219 lImLh~G~IvlDv~ 232 (263)
T COG1101 219 LIMLHSGKIVLDVT 232 (263)
T ss_pred EEEEeCCeEEEEcc
Confidence 99999999998643
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=290.85 Aligned_cols=218 Identities=23% Similarity=0.331 Sum_probs=188.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+..| +++.+|+++|.+| .+|+.++|+|+| ||||||||++++|..+|+ +|.+.+.|+
T Consensus 29 ~~li~l~~v~v~r--~gk~iL~~isW~V-----~~ge~W~I~G~N-----GsGKTTLL~ll~~~~~ps---sg~~~~~G~ 93 (257)
T COG1119 29 EPLIELKNVSVRR--NGKKILGDLSWQV-----NPGEHWAIVGPN-----GAGKTTLLSLLTGEHPPS---SGDVTLLGR 93 (257)
T ss_pred cceEEecceEEEE--CCEeeccccceee-----cCCCcEEEECCC-----CCCHHHHHHHHhcccCCC---CCceeeeee
Confidence 3558999999985 8889999999999 789999999998 799999999999999994 899999999
Q ss_pred ecCc-----cccccEEEEecC--CCCCCCCCHHHHHHHH--HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC
Q psy2519 95 PVEG-----KFRSACGFMYQH--DLFSPSLTVYEHLYFM--ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~-----~~r~~igyV~Q~--~~l~~~lTV~E~l~f~--~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~ 165 (622)
+..+ ++|++||+|.-+ ..+.+..+|+|-+.-+ +..........++..+++..+++.+|+.+.+|++.++
T Consensus 94 ~~G~~~~~~elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~-- 171 (257)
T COG1119 94 RFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGS-- 171 (257)
T ss_pred eccCCcchHHHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhh--
Confidence 8754 579999999753 4567788899877433 2222222122355677899999999999999999988
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEeccCcHHHHhhcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~-~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||-||||||-|||||+++|++||||||++|||...+..+++.|.+++.. .+.++|+|||.+ +|+-.-+++++
T Consensus 172 ------LS~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~-eEi~~~~th~l 244 (257)
T COG1119 172 ------LSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA-EEIPPCFTHRL 244 (257)
T ss_pred ------cCHhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcch-hhcccccceEE
Confidence 9999999999999999999999999999999999999999999999862 278999999996 78989999999
Q ss_pred eecCCceEEecC
Q psy2519 245 LLADSRTAFIGS 256 (622)
Q Consensus 245 ~L~~G~iv~~G~ 256 (622)
++++|+++++|.
T Consensus 245 ll~~g~v~~~g~ 256 (257)
T COG1119 245 LLKEGEVVAQGK 256 (257)
T ss_pred EeeCCceeeccc
Confidence 999999999874
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=327.47 Aligned_cols=215 Identities=18% Similarity=0.220 Sum_probs=177.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||++.+ .++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 250 ~i~~~~l~~~~----~~~l~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~i 312 (491)
T PRK10982 250 ILEVRNLTSLR----QPSIRDVSFDL-----HKGEILGIAGLV-----GAKRTDIVETLFGIREK---SAGTITLHGKKI 312 (491)
T ss_pred EEEEeCccccc----CcccceeeEEE-----eCCcEEEEecCC-----CCCHHHHHHHHcCCCcC---CccEEEECCEEC
Confidence 47889999963 35899999999 678888888887 89999999999999998 489999999987
Q ss_pred Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHH-H-c-CCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCc
Q psy2519 97 EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMA-L-L-KLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSS 164 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~-~-l-~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~ 164 (622)
.. ..++.+||++|+. .+++.+|+.+|..+.. . . .........+.+++++++++.+++. +..++.+++
T Consensus 313 ~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~- 391 (491)
T PRK10982 313 NNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGS- 391 (491)
T ss_pred CCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCccccccc-
Confidence 53 1356799999984 4788999887743321 0 0 0000012233445678999999995 467888776
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|+++++ +|.|||++|||+ +++.++|||++
T Consensus 392 -------LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~-~~~tvi~vsHd~-~~~~~~~d~v~ 462 (491)
T PRK10982 392 -------LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAK-KDKGIIIISSEM-PELLGITDRIL 462 (491)
T ss_pred -------CCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHH-CCCEEEEECCCh-HHHHhhCCEEE
Confidence 999999999999999999999999999999999999999999999987 699999999996 68889999999
Q ss_pred eecCCceEEecChH
Q psy2519 245 LLADSRTAFIGSKD 258 (622)
Q Consensus 245 ~L~~G~iv~~G~~~ 258 (622)
+|++|+++..++.+
T Consensus 463 ~l~~g~i~~~~~~~ 476 (491)
T PRK10982 463 VMSNGLVAGIVDTK 476 (491)
T ss_pred EEECCEEEEEEccc
Confidence 99999999877554
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=291.66 Aligned_cols=196 Identities=21% Similarity=0.284 Sum_probs=156.1
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.+.|+.+.|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++..
T Consensus 2 ~~~~~~~~~~-~~~~il~~vs~~i-----~~Ge~~~i~G~n-----GsGKSTLl~~i~G~~~~---~~G~i~~~g~~~~~ 67 (218)
T cd03290 2 QVTNGYFSWG-SGLATLSNINIRI-----PTGQLTMIVGQV-----GCGKSSLLLAILGEMQT---LEGKVHWSNKNESE 67 (218)
T ss_pred eeeeeEEecC-CCCcceeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhccCCC---CCCeEEECCccccc
Confidence 5778889874 2467999999999 677788888777 89999999999999988 48999999987642
Q ss_pred --------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-----------cCC
Q psy2519 99 --------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-----------QHT 159 (622)
Q Consensus 99 --------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-----------~~~ 159 (622)
..++.++|++|++.++ ..|++||+.+.... ... +.+++++.++|.+. .++
T Consensus 68 ~~~~~~~~~~~~~i~~~~q~~~~~-~~t~~~nl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 136 (218)
T cd03290 68 PSFEATRSRNRYSVAYAAQKPWLL-NATVEENITFGSPF------NKQ----RYKAVTDACSLQPDIDLLPFGDQTEIGE 136 (218)
T ss_pred ccccccchhhcceEEEEcCCCccc-cccHHHHHhhcCcC------CHH----HHHHHHHHhCcHHHHHhCcCccccCccc
Confidence 2356799999998877 57999999875311 111 12344555555432 223
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH--HHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR--MMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~--~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
.+.+ ||||||||++|||+|+.+|++|||||||+|||+.++.++++ +++.+.+ .|.|+|++||++ +.+
T Consensus 137 ~~~~--------LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~-~~~tii~~sH~~-~~~- 205 (218)
T cd03290 137 RGIN--------LSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD-DKRTLVLVTHKL-QYL- 205 (218)
T ss_pred CCCc--------CCHHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhc-CCCEEEEEeCCh-HHH-
Confidence 3333 99999999999999999999999999999999999999998 6666655 689999999997 455
Q ss_pred hhccceeeecCCc
Q psy2519 238 DMFDKIILLADSR 250 (622)
Q Consensus 238 ~~~D~v~~L~~G~ 250 (622)
..+|++++|++|.
T Consensus 206 ~~~d~i~~l~~G~ 218 (218)
T cd03290 206 PHADWIIAMKDGS 218 (218)
T ss_pred hhCCEEEEecCCC
Confidence 5799999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=328.30 Aligned_cols=216 Identities=18% Similarity=0.189 Sum_probs=173.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++|+++.| ++.++++++|+++ .+|+.+.++|+| |||||||+|+|+|+.++. .+|+|.++|++
T Consensus 259 ~~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~i~G~N-----GsGKSTLl~~l~G~~~~~--~~G~i~~~g~~ 324 (490)
T PRK10938 259 PRIVLNNGVVSY--NDRPILHNLSWQV-----NPGEHWQIVGPN-----GAGKSTLLSLITGDHPQG--YSNDLTLFGRR 324 (490)
T ss_pred ceEEEeceEEEE--CCeeEEeeceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCcc--cCCeEEEeccc
Confidence 368899999986 6667999999999 678888888887 899999999999987541 38999999987
Q ss_pred cCc-----cccccEEEEecCCCCCC--CCCHHHHHHHHHHc--CCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcC
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSP--SLTVYEHLYFMALL--KLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSS 165 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~--~lTV~E~l~f~~~l--~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~ 165 (622)
+.. ..++.+||++|++.+++ ..|++|++.+.... ....... .+.+++++++++.+||.+ ..++++++
T Consensus 325 ~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 401 (490)
T PRK10938 325 RGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVS-DRQQKLAQQWLDILGIDKRTADAPFHS-- 401 (490)
T ss_pred CCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCC-HHHHHHHHHHHHHcCCchhhccCchhh--
Confidence 532 24678999999876544 35777776543211 1100111 223456889999999987 78888777
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~ 244 (622)
|||||||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.+.|||++|||+ +++.+ ++|+++
T Consensus 402 ------LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~-~~~~~~~~d~v~ 474 (490)
T PRK10938 402 ------LSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHA-EDAPACITHRLE 474 (490)
T ss_pred ------CCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecch-hhhhhhhheeEE
Confidence 9999999999999999999999999999999999999999999999874345799999996 57766 589999
Q ss_pred eecCCceEEec
Q psy2519 245 LLADSRTAFIG 255 (622)
Q Consensus 245 ~L~~G~iv~~G 255 (622)
+|++|++++.-
T Consensus 475 ~l~~G~i~~~~ 485 (490)
T PRK10938 475 FVPDGDIYRYV 485 (490)
T ss_pred EecCCceEEee
Confidence 99999988754
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=281.76 Aligned_cols=167 Identities=31% Similarity=0.453 Sum_probs=145.8
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|+++.|..++.++++++|+++ .+|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i-----~~G~~~~l~G~n-----GsGKstLl~~i~G~~~~---~~G~i~~~g~~~~ 67 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTI-----KPGEKVAIVGPS-----GSGKSTLLKLLLRLYDP---TSGEILIDGVDLR 67 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCCEEEECCEEhh
Confidence 3578999987322237899999999 678888888777 89999999999999998 5899999999875
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. ..++.++|++|++.+++ .|+.||+ ||
T Consensus 68 ~~~~~~~~~~i~~~~~~~~~~~-~t~~e~l------------------------------------------------LS 98 (171)
T cd03228 68 DLDLESLRKNIAYVPQDPFLFS-GTIRENI------------------------------------------------LS 98 (171)
T ss_pred hcCHHHHHhhEEEEcCCchhcc-chHHHHh------------------------------------------------hC
Confidence 3 35678999999987776 5998886 69
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||++|||+|+.+|++++|||||+|||+.++.++.+.|+++++ ++|+|++||++ +++.. ||++++|++|+
T Consensus 99 ~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~--~~tii~~sh~~-~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 99 GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK--GKTVIVIAHRL-STIRD-ADRIIVLDDGR 171 (171)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC--CCEEEEEecCH-HHHHh-CCEEEEEcCCC
Confidence 9999999999999999999999999999999999999999999953 69999999996 56766 99999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=291.30 Aligned_cols=187 Identities=24% Similarity=0.296 Sum_probs=165.6
Q ss_pred CcccCCccccccccc-------eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVGS-------VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-------~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
.++++||++.|..+. +.++++||+++ ++|+.+.++|.+ |||||||-|+|.|+.+| ++|+|
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i-----~~ge~~glVGES-----G~GKSTlgr~i~~L~~p---t~G~i 70 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSI-----KEGETLGLVGES-----GCGKSTLGRLILGLEEP---TSGEI 70 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEE-----cCCCEEEEEecC-----CCCHHHHHHHHHcCcCC---CCceE
Confidence 568899999987653 58999999999 677777777664 89999999999999999 59999
Q ss_pred EECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCC
Q psy2519 90 RVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQ 168 (622)
Q Consensus 90 ~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~ 168 (622)
.++|+++.... ++++.+++.++|+.+||.+ ..+++ |++
T Consensus 71 ~f~g~~i~~~~------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ry-----Phe 109 (268)
T COG4608 71 LFEGKDITKLS------------------------------------KEERRERVLELLEKVGLPEEFLYRY-----PHE 109 (268)
T ss_pred EEcCcchhhcc------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcC-----Ccc
Confidence 99999865311 2445678999999999964 56776 566
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||||||++|||||+.+|+++++|||||+||...+.+++++|+++.++.|.|.++++||. +.+..++||+.+|..
T Consensus 110 ---lSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL-~vv~~isdri~VMy~ 185 (268)
T COG4608 110 ---LSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDL-SVVRYISDRIAVMYL 185 (268)
T ss_pred ---cCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEH-HhhhhhcccEEEEec
Confidence 9999999999999999999999999999999999999999999999998899999999996 789999999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++|..|+.++++
T Consensus 186 G~iVE~g~~~~~~ 198 (268)
T COG4608 186 GKIVEIGPTEEVF 198 (268)
T ss_pred CceeEecCHHHHh
Confidence 9999999999876
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.08 Aligned_cols=221 Identities=24% Similarity=0.337 Sum_probs=186.0
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
...++++++||+|+|+.. .+++|+|+||++ .+|+.++++|+ |||||||.+.+|-....| ++|+|.+
T Consensus 983 ~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i-----~~GqTvALVG~-----SGsGKSTvI~LLeRfYdp---~~G~V~I 1049 (1228)
T KOG0055|consen 983 NVKGDIEFRNVSFAYPTRPDVPVLNNLSLSI-----RAGQTVALVGP-----SGSGKSTVISLLERFYDP---DAGKVKI 1049 (1228)
T ss_pred cceeEEEEeeeEeeCCCCCCchhhcCCcEEe-----cCCCEEEEECC-----CCCCHHHHHHHHHHhcCC---CCCeEEE
Confidence 356779999999999755 378999999999 56666666655 599999999999999998 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH-----HHHHHHHHHhCCCcccCCccC
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI-----ALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~-----~~v~~~l~~lgL~~~~~~~v~ 162 (622)
||+|+++ .+|+++|.|.|+|.||.. |++|||.|+. .+ .+..|.. +.+.+.+ .+|++..|+.+|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~-TIrENI~YG~-~~----vs~~eIi~Aak~ANaH~FI--~sLP~GyDT~vG 1121 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNG-TIRENIAYGS-EE----VSEEEIIEAAKLANAHNFI--SSLPQGYDTRVG 1121 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcc-cHHHHHhccC-CC----CCHHHHHHHHHHhhhHHHH--hcCcCcccCccC
Confidence 9999976 389999999999999876 9999999982 11 2323222 1222332 267889999999
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ +...||||||||++|||||+.||+||||||-||+||+.+.+.+.+.|.+.. .|+|.|++.|.++ ..+-||.
T Consensus 1122 e----rG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~--~gRT~IvIAHRLS--TIqnaD~ 1193 (1228)
T KOG0055|consen 1122 E----RGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAM--EGRTTIVIAHRLS--TIQNADV 1193 (1228)
T ss_pred c----ccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhh--cCCcEEEEecchh--hhhcCCE
Confidence 7 234599999999999999999999999999999999999999999999986 5899999999973 4578999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|+++++|+|++.|+.++++.
T Consensus 1194 I~Vi~~G~VvE~GtH~~L~~ 1213 (1228)
T KOG0055|consen 1194 IAVLKNGKVVEQGTHDELLA 1213 (1228)
T ss_pred EEEEECCEEEecccHHHHHh
Confidence 99999999999999998874
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-35 Score=328.66 Aligned_cols=209 Identities=23% Similarity=0.261 Sum_probs=174.5
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++| | ++++++++|+++ .+|+.++++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 6 ~l~i~~l~~~y--~~~~~il~~vs~~i-----~~Ge~~~iiG~N-----GsGKSTLlk~i~G~~~p---~~G~i~~~~~- 69 (556)
T PRK11819 6 IYTMNRVSKVV--PPKKQILKDISLSF-----FPGAKIGVLGLN-----GAGKSTLLRIMAGVDKE---FEGEARPAPG- 69 (556)
T ss_pred EEEEeeEEEEe--CCCCeeeeCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCC-
Confidence 57899999997 5 578999999999 677788888887 89999999999999998 5899999752
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHc-C-------------CCcc--cc-----------------HHHHHH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-K-------------LDRR--VK-----------------AYQRIA 142 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~-------------~~~~--~~-----------------~~~~~~ 142 (622)
..+|||+|++.+++.+||.||+.++... . .... .. ..+..+
T Consensus 70 ------~~i~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 143 (556)
T PRK11819 70 ------IKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDS 143 (556)
T ss_pred ------CEEEEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHH
Confidence 4699999999999999999999875320 0 0000 00 001245
Q ss_pred HHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC
Q psy2519 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK 222 (622)
Q Consensus 143 ~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g 222 (622)
+++++++.+||.. .++.+++ |||||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++.
T Consensus 144 ~~~~~l~~~gl~~-~~~~~~~--------LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~---- 210 (556)
T PRK11819 144 QLEIAMDALRCPP-WDAKVTK--------LSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP---- 210 (556)
T ss_pred HHHHHHHhCCCCc-ccCchhh--------cCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC----
Confidence 6788999999964 6777776 99999999999999999999999999999999999999999999862
Q ss_pred CEEEEEeccCcHHHHhhccceeeecCCceE-EecChHHHH
Q psy2519 223 KTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 261 (622)
Q Consensus 223 ~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 261 (622)
.|||++||++ +.+.+.||+|++|++|+++ +.|+.++..
T Consensus 211 ~tviiisHd~-~~~~~~~d~i~~l~~g~i~~~~g~~~~~~ 249 (556)
T PRK11819 211 GTVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWL 249 (556)
T ss_pred CeEEEEeCCH-HHHHhhcCeEEEEeCCEEEEecCCHHHHH
Confidence 4999999996 6888999999999999986 888887643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=297.47 Aligned_cols=228 Identities=18% Similarity=0.253 Sum_probs=195.0
Q ss_pred CCcccCCccccccc--cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC--CceeeEEEE
Q psy2519 16 NNEEVPNVDFSEIV--GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD--CIIDGDIRV 91 (622)
Q Consensus 16 ~~~~~~~~~~~~~~--g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--~~~~G~I~~ 91 (622)
..++++|++..+.. |.+++++++|+.+ .+|+...++|. ||||||-..+.+.|+++.. ...+|+|.+
T Consensus 5 ~lL~v~nLsV~f~~~~~~~~aVk~isf~i-----~~GEtlAlVGE-----SGSGKSvTa~sim~LLp~~~~~~~sg~i~f 74 (534)
T COG4172 5 PLLSIRNLSVAFHQEGGTVEAVKGISFDI-----EAGETLALVGE-----SGSGKSVTALSILGLLPSPAAAHPSGSILF 74 (534)
T ss_pred cceeeeccEEEEecCCcceEeeccceeee-----cCCCEEEEEec-----CCCCccHHHHHHHHhcCCCcccCccceeEE
Confidence 35688999988753 3588999999999 67777777766 4899999999999999752 346899999
Q ss_pred CCEecCc----c----ccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 92 NGKPVEG----K----FRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 92 ~G~~~~~----~----~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
+|+++-. . ...+|+++||++ .|.|-.|+.+.+.-..+++. ++++++.++++.++|+.+|+.+...+.-
T Consensus 75 ~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hr--g~~~~~Ar~r~lelL~~VgI~~p~~rl~ 152 (534)
T COG4172 75 DGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHR--GLSRAAARARALELLELVGIPEPEKRLD 152 (534)
T ss_pred cChhhhcCCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHh--cccHHHHHHHHHHHHHHcCCCchhhhhh
Confidence 9999743 1 236899999998 58999999999887766653 4577788899999999999976543331
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.+|++ |||||||||.||+||+.+|++|+.||||++||...+.+|+++|++|.++.|+.++++|||. .-+.+++|
T Consensus 153 --~yPHe---LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL-~iVr~~AD 226 (534)
T COG4172 153 --AYPHE---LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL-GIVRKFAD 226 (534)
T ss_pred --hCCcc---cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccH-HHHHHhhh
Confidence 23777 9999999999999999999999999999999999999999999999998999999999996 68999999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++|.+|++++.|+.++++
T Consensus 227 rV~VM~~G~ivE~~~t~~lF 246 (534)
T COG4172 227 RVYVMQHGEIVETGTTETLF 246 (534)
T ss_pred hEEEEeccEEeecCcHHHHh
Confidence 99999999999999999876
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=275.67 Aligned_cols=157 Identities=27% Similarity=0.386 Sum_probs=140.4
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++| ++.++++++|+++ ++|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 1 l~~~~l~~~~--~~~~vl~~i~~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~i~G~~~~---~~G~v~~~g~~~~ 65 (163)
T cd03216 1 LELRGITKRF--GGVKALDGVSLSV-----RRGEVHALLGEN-----GAGKSTLMKILSGLYKP---DSGEILVDGKEVS 65 (163)
T ss_pred CEEEEEEEEE--CCeEEEeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEECC
Confidence 3678999997 4567999999999 677788888776 89999999999999998 5899999999875
Q ss_pred c-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 98 G-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..++.+||++| |
T Consensus 66 ~~~~~~~~~~~i~~~~q--------------------------------------------------------------L 83 (163)
T cd03216 66 FASPRDARRAGIAMVYQ--------------------------------------------------------------L 83 (163)
T ss_pred cCCHHHHHhcCeEEEEe--------------------------------------------------------------c
Confidence 3 13567888888 7
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++++|||||+|||+.++..+.+.|+++++ +|.|+|++||++ +++.+.||++++|++|+++
T Consensus 84 S~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~-~~~tiii~sh~~-~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRA-QGVAVIFISHRL-DEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 589999999996 5788899999999999987
Q ss_pred E
Q psy2519 253 F 253 (622)
Q Consensus 253 ~ 253 (622)
+
T Consensus 162 ~ 162 (163)
T cd03216 162 G 162 (163)
T ss_pred e
Confidence 5
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=361.55 Aligned_cols=215 Identities=19% Similarity=0.192 Sum_probs=181.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+++|+++ ++|+++.|+|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1236 g~I~f~nVsf~Y~~~~~~VL~~is~~I-----~~GekVaIVGrS-----GSGKSTLl~lL~rl~~p---~~G~I~IDG~d 1302 (1622)
T PLN03130 1236 GSIKFEDVVLRYRPELPPVLHGLSFEI-----SPSEKVGIVGRT-----GAGKSSMLNALFRIVEL---ERGRILIDGCD 1302 (1622)
T ss_pred CcEEEEEEEEEeCCCCCceecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCcCCC---CCceEEECCEe
Confidence 468999999999545467999999999 788888988776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~ 164 (622)
+.. .+|+++|+|||++.+|+. |++|||..+.. .++ +.+.++++..++ ++..|+.+++
T Consensus 1303 I~~i~l~~LR~~IsiVpQdp~LF~G-TIreNLd~~~~------~td----eei~~Al~~a~l~~~I~~lp~GLdt~Vge- 1370 (1622)
T PLN03130 1303 ISKFGLMDLRKVLGIIPQAPVLFSG-TVRFNLDPFNE------HND----ADLWESLERAHLKDVIRRNSLGLDAEVSE- 1370 (1622)
T ss_pred cccCCHHHHHhccEEECCCCccccc-cHHHHhCcCCC------CCH----HHHHHHHHHcCcHHHHHhCccccCccccC-
Confidence 875 589999999999999987 99999976421 122 224455555544 3456777765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +.+ .-||||+
T Consensus 1371 ---~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~--~~~TvI~IAHRL-~tI-~~~DrIl 1443 (1622)
T PLN03130 1371 ---AGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEF--KSCTMLIIAHRL-NTI-IDCDRIL 1443 (1622)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEEEeCCh-HHH-HhCCEEE
Confidence 123599999999999999999999999999999999999999999999985 479999999997 345 5699999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++++
T Consensus 1444 VLd~G~IvE~Gt~~eLl~ 1461 (1622)
T PLN03130 1444 VLDAGRVVEFDTPENLLS 1461 (1622)
T ss_pred EEECCEEEEeCCHHHHHh
Confidence 999999999999999863
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-34 Score=325.75 Aligned_cols=203 Identities=21% Similarity=0.329 Sum_probs=173.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+
T Consensus 318 ~~l~~~~l~~~~--~~~~~l~~is~~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~~- 381 (530)
T PRK15064 318 NALEVENLTKGF--DNGPLFKNLNLLL-----EAGERLAIIGEN-----GVGKTTLLRTLVGELEP---DSGTVKWSEN- 381 (530)
T ss_pred ceEEEEeeEEee--CCceeecCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCc-
Confidence 368899999986 5667999999999 678888888887 89999999999999998 4899999874
Q ss_pred cCccccccEEEEecCCC--CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcccc
Q psy2519 96 VEGKFRSACGFMYQHDL--FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gL 172 (622)
+.+|||+|++. +++.+||.|++.+... . . ..+++++++++.+|+. +..++.+++ |
T Consensus 382 ------~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~---~--~~~~~~~~~l~~~~l~~~~~~~~~~~--------L 439 (530)
T PRK15064 382 ------ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---E---G--DDEQAVRGTLGRLLFSQDDIKKSVKV--------L 439 (530)
T ss_pred ------eEEEEEcccccccCCCCCcHHHHHHHhcc---C---C--ccHHHHHHHHHHcCCChhHhcCcccc--------c
Confidence 46999999863 6678999999865311 1 1 1134578899999994 677888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||+|+.+|++|||||||+|||+.++..+.+.|+++ +.|||++|||+ +.+.++||++++|++|+++
T Consensus 440 SgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vsHd~-~~~~~~~d~i~~l~~g~i~ 514 (530)
T PRK15064 440 SGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY----EGTLIFVSHDR-EFVSSLATRIIEITPDGVV 514 (530)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC----CCEEEEEeCCH-HHHHHhCCEEEEEECCeEE
Confidence 999999999999999999999999999999999999999999876 34999999996 6888999999999999998
Q ss_pred -EecChHHHH
Q psy2519 253 -FIGSKDAAL 261 (622)
Q Consensus 253 -~~G~~~~~~ 261 (622)
+.|+++++.
T Consensus 515 ~~~g~~~~~~ 524 (530)
T PRK15064 515 DFSGTYEEYL 524 (530)
T ss_pred EcCCCHHHHH
Confidence 889888654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-35 Score=362.38 Aligned_cols=214 Identities=20% Similarity=0.201 Sum_probs=180.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+|+|+++ ++|+++.++|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1233 g~I~f~nVsf~Y~~~~~~vL~~isl~I-----~~GekvaIVG~S-----GSGKSTL~~lL~rl~~p---~~G~I~IdG~d 1299 (1495)
T PLN03232 1233 GSIKFEDVHLRYRPGLPPVLHGLSFFV-----SPSEKVGVVGRT-----GAGKSSMLNALFRIVEL---EKGRIMIDDCD 1299 (1495)
T ss_pred CcEEEEEEEEEECCCCCcccccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCceEEECCEE
Confidence 468999999999555567999999999 788888888775 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+.. .+|++++||||++.+|+. |++|||..+. ..++ +.+.++++..++. +..|+.+++
T Consensus 1300 i~~i~~~~lR~~i~iVpQdp~LF~g-TIr~NL~~~~------~~sd----eei~~al~~a~l~~~I~~lp~GLdt~v~e- 1367 (1495)
T PLN03232 1300 VAKFGLTDLRRVLSIIPQSPVLFSG-TVRFNIDPFS------EHND----ADLWEALERAHIKDVIDRNPFGLDAEVSE- 1367 (1495)
T ss_pred hhhCCHHHHHhhcEEECCCCeeeCc-cHHHHcCCCC------CCCH----HHHHHHHHHcCCHHHHHhCcCCCCceecC-
Confidence 865 489999999999999986 9999997642 1122 2344556665553 345666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+++|+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +.+ .-||||+
T Consensus 1368 ---~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~--~~~TvI~IAHRl-~ti-~~~DrIl 1440 (1495)
T PLN03232 1368 ---GGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEF--KSCTMLVIAHRL-NTI-IDCDKIL 1440 (1495)
T ss_pred ---CCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEE
Confidence 224599999999999999999999999999999999999999999999975 479999999997 445 5699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|++++++
T Consensus 1441 VL~~G~ivE~Gt~~eLl 1457 (1495)
T PLN03232 1441 VLSSGQVLEYDSPQELL 1457 (1495)
T ss_pred EEECCEEEEECCHHHHH
Confidence 99999999999999886
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-35 Score=287.23 Aligned_cols=209 Identities=22% Similarity=0.303 Sum_probs=180.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc---cccccEEEEe
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACGFMY 108 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~---~~r~~igyV~ 108 (622)
.+++.++|+++ .+|+.+..+|+| ||||||+||+|+|++.| .+|.|.++|.+.-+ ++-+.+++|+
T Consensus 37 ~~AVqdisf~I-----P~G~ivgflGaN-----GAGKSTtLKmLTGll~p---~~G~v~V~G~~Pf~~~~~~~~~~~~v~ 103 (325)
T COG4586 37 IEAVQDISFEI-----PKGEIVGFLGAN-----GAGKSTTLKMLTGLLLP---TSGKVRVNGKDPFRRREEYLRSIGLVM 103 (325)
T ss_pred hhhhheeeeec-----CCCcEEEEEcCC-----CCcchhhHHHHhCcccc---CCCeEEecCcCcchhHHHHHHHHHHHh
Confidence 45788899988 566677777776 89999999999999999 59999999998644 3556788886
Q ss_pred -cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh
Q psy2519 109 -QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187 (622)
Q Consensus 109 -Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~ 187 (622)
|...+.-.+-+.|.+..-...+. ++.++-+++.+.+.+.++|++..+.++.. ||-|||.|+.+|.+|+
T Consensus 104 gqk~ql~Wdlp~~ds~~v~~~Iy~---Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~--------LSlGqRmraeLaaaLL 172 (325)
T COG4586 104 GQKLQLWWDLPALDSLEVLKLIYE---IPDDEFAERLDFLTEILDLEGFLKWPVRK--------LSLGQRMRAELAAALL 172 (325)
T ss_pred hhhheeeeechhhhhHHHHHHHHh---CCHHHHHHHHHHHHHHhcchhhhhhhhhh--------ccchHHHHHHHHHHhc
Confidence 44567777778888877655542 45666778899999999999988888777 9999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
++|+||||||||-|||..++..|.+.+++.+++++.||+++||+. +.+.++||||++++.|+++|+|+.+++.+-|.
T Consensus 173 h~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~-~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~ 249 (325)
T COG4586 173 HPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIF-DDIATLCDRVLLIDQGQLVFDGTLAQLQEQFG 249 (325)
T ss_pred CCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecch-hhHHHhhhheEEeeCCcEeecccHHHHHHHhC
Confidence 999999999999999999999999999999998999999999996 68999999999999999999999998876553
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=327.65 Aligned_cols=205 Identities=19% Similarity=0.237 Sum_probs=168.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+ ++.++++++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+||+++
T Consensus 322 ~i~~~~v~f~y~-~~~~~l~~i~~~i-----~~G~~~aivG~s-----GsGKSTL~~ll~g~~~~---~~G~i~~~g~~~ 387 (547)
T PRK10522 322 TLELRNVTFAYQ-DNGFSVGPINLTI-----KRGELLFLIGGN-----GSGKSTLAMLLTGLYQP---QSGEILLDGKPV 387 (547)
T ss_pred eEEEEEEEEEeC-CCCeEEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCEEC
Confidence 578999999985 4467999999999 678888888776 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. .+|++++||+|++.+++. |++|| . .. ...+.+++.++.+++.+..+..-+. .....|
T Consensus 388 ~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n---~------~~----~~~~~~~~~~~~~~l~~~~~~~~~~---~~G~~L 450 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTDFHLFDQ-LLGPE---G------KP----ANPALVEKWLERLKMAHKLELEDGR---ISNLKL 450 (547)
T ss_pred CCCCHHHHhhheEEEecChhHHHH-hhccc---c------Cc----hHHHHHHHHHHHcCCchhhhccccC---CCCCCC
Confidence 64 478899999999887765 78777 1 01 1234567888999887644321110 012349
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
|||||||++|||||+.+|++|+|||||++||+.+...+.+.+.+..++.|+|+|++||++ +..+.||++++|++|+++
T Consensus 451 SgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~--~~~~~~d~i~~l~~G~i~ 528 (547)
T PRK10522 451 SKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDD--HYFIHADRLLEMRNGQLS 528 (547)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEech--HHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999877543589999999997 456789999999999998
Q ss_pred Ee
Q psy2519 253 FI 254 (622)
Q Consensus 253 ~~ 254 (622)
..
T Consensus 529 e~ 530 (547)
T PRK10522 529 EL 530 (547)
T ss_pred Ee
Confidence 76
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-35 Score=358.23 Aligned_cols=214 Identities=22% Similarity=0.265 Sum_probs=181.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|..+..++|+|+|+++ ++|+++.|+|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1307 G~I~f~nVsf~Y~~~~~~vL~~vsf~I-----~~GekVaIVGrT-----GSGKSTLl~lLlrl~~p---~~G~I~IDG~d 1373 (1560)
T PTZ00243 1307 GSLVFEGVQMRYREGLPLVLRGVSFRI-----APREKVGIVGRT-----GSGKSTLLLTFMRMVEV---CGGEIRVNGRE 1373 (1560)
T ss_pred CeEEEEEEEEEeCCCCCceeecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEE
Confidence 468899999999655567999999999 788888888776 89999999999999999 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~ 164 (622)
+.. ++|+.+|||||++.+|+. ||+|||.... ..+. +.+.++++..+|.+ ..|+.+++
T Consensus 1374 i~~i~l~~LR~~I~iVpQdp~LF~g-TIreNIdp~~------~~sd----eeI~~Al~~a~l~~~I~~lp~Gldt~vge- 1441 (1560)
T PTZ00243 1374 IGAYGLRELRRQFSMIPQDPVLFDG-TVRQNVDPFL------EASS----AEVWAALELVGLRERVASESEGIDSRVLE- 1441 (1560)
T ss_pred cccCCHHHHHhcceEECCCCccccc-cHHHHhCccc------CCCH----HHHHHHHHHCCChHHHhhCcccccccccC-
Confidence 875 589999999999999976 9999995421 1122 34567777777654 35667765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+++ |+||+||||||+||+.+...|.+.|++.. .++|+|+++|.+ +....||+|
T Consensus 1442 ---~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~--~~~TvI~IAHRl--~ti~~~DrI 1514 (1560)
T PTZ00243 1442 ---GGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAF--SAYTVITIAHRL--HTVAQYDKI 1514 (1560)
T ss_pred ---CcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHC--CCCEEEEEeccH--HHHHhCCEE
Confidence 2245999999999999999996 89999999999999999999999999875 479999999997 445689999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|++++++
T Consensus 1515 lVLd~G~VvE~Gt~~eLl 1532 (1560)
T PTZ00243 1515 IVMDHGAVAEMGSPRELV 1532 (1560)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999886
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-35 Score=328.94 Aligned_cols=199 Identities=27% Similarity=0.367 Sum_probs=164.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|+.++.++++++|+++ ++|+.+.++|++ |||||||+|+|+|+.+| .+|+|.+||+++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i-----~~G~~~~ivG~s-----GsGKSTL~~ll~g~~~~---~~G~I~~~g~~i 386 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTV-----PPGERVALVGPS-----GAGKSTLLNLLLGFVDP---TEGSIAVNGVPL 386 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEeh
Confidence 58899999998644457999999999 678888888775 89999999999999999 589999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~~ 165 (622)
.+ ++|+.+|||+|++.+++. |++||+.++... .++ +.+.++++..++.+ ..|+.+++
T Consensus 387 ~~~~~~~lr~~i~~v~Q~~~lf~~-ti~~Ni~~~~~~-----~~~----~~i~~a~~~~~l~~~i~~lp~Gldt~v~e-- 454 (529)
T TIGR02857 387 ADADADSWRDQIAWVPQHPFLFAG-TIAENIRLARPD-----ASD----AEIRRALERAGLDEFVAALPQGLDTLIGE-- 454 (529)
T ss_pred hhCCHHHHHhheEEEcCCCcccCc-CHHHHHhccCCC-----CCH----HHHHHHHHHcCcHHHHHhCcccccchhcc--
Confidence 64 478999999999998875 999999886321 121 23445566666543 34666665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....||||||||++|||||+.+|++++|||||++||+.+..++.+.++++. .++|+|++||++ +. .+.||+|++
T Consensus 455 --~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~-~~-~~~~d~i~~ 528 (529)
T TIGR02857 455 --GGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALA--QGRTVLLVTHRL-AL-AERADRIVV 528 (529)
T ss_pred --ccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhc--CCCEEEEEecCH-HH-HHhCCEEEe
Confidence 123499999999999999999999999999999999999999999999985 479999999997 34 478999987
Q ss_pred e
Q psy2519 246 L 246 (622)
Q Consensus 246 L 246 (622)
|
T Consensus 529 l 529 (529)
T TIGR02857 529 L 529 (529)
T ss_pred C
Confidence 5
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=325.54 Aligned_cols=211 Identities=23% Similarity=0.237 Sum_probs=172.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++
T Consensus 4 ~i~~~nls~~~~-~~~~il~~is~~i-----~~Ge~~~liG~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~--- 66 (552)
T TIGR03719 4 IYTMNRVSKVVP-PKKEILKDISLSF-----FPGAKIGVLGLN-----GAGKSTLLRIMAGVDKE---FNGEARPAP--- 66 (552)
T ss_pred EEEEeeEEEecC-CCCeeecCceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecC---
Confidence 578999999973 2567999999999 677788888887 89999999999999998 589999975
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHc-C------------CCccccH--------------------HHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALL-K------------LDRRVKA--------------------YQRIAL 143 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~------------~~~~~~~--------------------~~~~~~ 143 (622)
+..+|||+|++.+++.+||+||+.++... + ....... .+...+
T Consensus 67 ----~~~i~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (552)
T TIGR03719 67 ----GIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRK 142 (552)
T ss_pred ----CCEEEEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 24699999999999999999999875321 0 0000000 001245
Q ss_pred HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC
Q psy2519 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK 223 (622)
Q Consensus 144 v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~ 223 (622)
++++++.+|+.. .++.+++ |||||||||+|||+|+.+|++|||||||++||+.++..+.+.|+++ +.
T Consensus 143 ~~~~l~~~~l~~-~~~~~~~--------LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~----~~ 209 (552)
T TIGR03719 143 LEIAMDALRCPP-WDADVTK--------LSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY----PG 209 (552)
T ss_pred HHHHHhhCCCCc-ccCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC----CC
Confidence 677888888854 5777666 9999999999999999999999999999999999999999999875 34
Q ss_pred EEEEEeccCcHHHHhhccceeeecCCceE-EecChHHHHH
Q psy2519 224 TVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAALA 262 (622)
Q Consensus 224 tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~~ 262 (622)
|||++||++ +.+..+||++++|++|+++ +.|+.++..+
T Consensus 210 tvIiisHd~-~~~~~~~d~v~~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 210 TVVAVTHDR-YFLDNVAGWILELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred eEEEEeCCH-HHHHhhcCeEEEEECCEEEEecCCHHHHHH
Confidence 999999996 6888999999999999976 7898886543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=294.17 Aligned_cols=206 Identities=24% Similarity=0.319 Sum_probs=160.6
Q ss_pred EEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 11 VILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
-..-++.++++|+++. ..++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.
T Consensus 33 ~~~~~~~l~i~nls~~----~~~vL~~vs~~i-----~~Ge~~~liG~N-----GsGKSTLl~~I~Gl~~p---~~G~I~ 95 (282)
T cd03291 33 HSSDDNNLFFSNLCLV----GAPVLKNINLKI-----EKGEMLAITGST-----GSGKTSLLMLILGELEP---SEGKIK 95 (282)
T ss_pred cCCCCCeEEEEEEEEe----cccceeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEE
Confidence 3445566889999984 256999999999 677888888887 89999999999999998 489999
Q ss_pred ECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCC
Q psy2519 91 VNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGS 163 (622)
Q Consensus 91 ~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~ 163 (622)
++| .++|++|++.+++. ||+||+.+..... .. ++.+.++.+++.+.. ++.++.
T Consensus 96 i~g---------~i~yv~q~~~l~~~-tv~enl~~~~~~~------~~----~~~~~l~~~~l~~~l~~~~~~~~~~~~~ 155 (282)
T cd03291 96 HSG---------RISFSSQFSWIMPG-TIKENIIFGVSYD------EY----RYKSVVKACQLEEDITKFPEKDNTVLGE 155 (282)
T ss_pred ECC---------EEEEEeCccccccc-CHHHHhhcccccC------HH----HHHHHHHHhCCHHHHHhccccccceecC
Confidence 988 38999999888875 9999998753211 10 112233333332211 112211
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l-~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
..+.||||||||++|||+|+.+|++|||||||+|||+.++..+.+.+ ++++ .+.|||++||++ ..+ ..||+
T Consensus 156 ----~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~--~~~tIiiisH~~-~~~-~~~d~ 227 (282)
T cd03291 156 ----GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADK 227 (282)
T ss_pred ----CCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhh--CCCEEEEEeCCh-HHH-HhCCE
Confidence 11239999999999999999999999999999999999999999865 5654 478999999997 455 58999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
+++|++|++++.|+++++.
T Consensus 228 i~~l~~G~i~~~g~~~~~~ 246 (282)
T cd03291 228 ILILHEGSSYFYGTFSELQ 246 (282)
T ss_pred EEEEECCEEEEECCHHHHH
Confidence 9999999999999988764
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-34 Score=283.35 Aligned_cols=193 Identities=18% Similarity=0.166 Sum_probs=158.9
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE-ECCEecCccccccEEEEecCCC
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR-VNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~-~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
+++++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|. ++|..+. +.|++.
T Consensus 2 vl~~vs~~i-----~~Ge~~~l~G~N-----GsGKSTLlk~i~Gl~~~---~sG~i~~~~~~~~~---------~~~~~~ 59 (213)
T PRK15177 2 VLDKTDFVM-----GYHEHIGILAAP-----GSGKTTLTRLLCGLDAP---DEGDFIGLRGDALP---------LGANSF 59 (213)
T ss_pred eeeeeeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCCCEEEecCceec---------cccccc
Confidence 689999999 677788888777 89999999999999998 589997 7775431 234567
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCe
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~l 192 (622)
++|.+|++||+.+....+. ....+. .+.+.+.++|.+..++.+++ ||||||||++|||+|+.+|++
T Consensus 60 l~~~ltv~enl~~~~~~~~---~~~~~~---~~~~~~~~~l~~~~~~~~~~--------lS~G~~qrv~la~al~~~p~l 125 (213)
T PRK15177 60 ILPGLTGEENARMMASLYG---LDGDEF---SHFCYQLTQLEQCYTDRVSE--------YSVTMKTHLAFAINLLLPCRL 125 (213)
T ss_pred cCCcCcHHHHHHHHHHHcC---CCHHHH---HHHHHHHhChhHHhhchHhh--------cCHHHHHHHHHHHHHhcCCCE
Confidence 8999999999999765432 122221 22344567888778888777 999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 193 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+||||||+++|+.++..+.+.+.+..+ +.|+|++||++ .++.++||++++|++|++++.|+.+++.+++.
T Consensus 126 lllDEP~~~lD~~~~~~~~~~l~~~~~--~~~ii~vsH~~-~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 195 (213)
T PRK15177 126 YIADGKLYTGDNATQLRMQAALACQLQ--QKGLIVLTHNP-RLIKEHCHAFGVLLHGKITMCEDLAQATALFE 195 (213)
T ss_pred EEECCCCccCCHHHHHHHHHHHHHHhh--CCcEEEEECCH-HHHHHhcCeeEEEECCeEEEeCCHHHHHHHHH
Confidence 999999999999999999998876544 46899999997 67888999999999999999999998876654
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-35 Score=327.89 Aligned_cols=187 Identities=27% Similarity=0.351 Sum_probs=155.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+|+|+ ++.++|+++|+++ ++|++++++|++ |||||||+|+|+|+.+| .+|+|.+||++
T Consensus 333 ~~I~~~~vsf~Y~-~~~~vL~~isl~i-----~~G~~vaIvG~S-----GsGKSTLl~lL~g~~~p---~~G~I~i~g~~ 398 (529)
T TIGR02868 333 PTLELRDLSFGYP-GSPPVLDGVSLDL-----PPGERVAILGPS-----GSGKSTLLMLLTGLLDP---LQGEVTLDGVS 398 (529)
T ss_pred ceEEEEEEEEecC-CCCceeecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEE
Confidence 4588999999984 3356999999999 788888888775 89999999999999999 59999999998
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCcC
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSS 165 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~~ 165 (622)
+.+ ++|+.+|||+|++.+++. |++|||.++.. ..++ +++.++++..++. +..|+.+|+
T Consensus 399 i~~~~~~lr~~i~~V~Q~~~lF~~-TI~eNI~~g~~-----~~~~----e~i~~al~~a~l~~~i~~lp~GldT~ige-- 466 (529)
T TIGR02868 399 VSSLQDELRRRISVFAQDAHLFDT-TVRDNLRLGRP-----DATD----EELWAALERVGLADWLRSLPDGLDTVLGE-- 466 (529)
T ss_pred hhhHHHHHHhheEEEccCcccccc-cHHHHHhccCC-----CCCH----HHHHHHHHHcCCHHHHHhCcccccchhcc--
Confidence 864 578899999999998877 99999998631 1122 2344556655553 445777776
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
....||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .++|+|++||++
T Consensus 467 --~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~--~~~TvIiItHrl 529 (529)
T TIGR02868 467 --GGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAAL--SGKTVVVITHHL 529 (529)
T ss_pred --ccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhc--CCCEEEEEecCC
Confidence 224599999999999999999999999999999999999999999999875 479999999974
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=356.57 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=181.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|+.+..++|+++|+++ ++|+++.++|++ |||||||+++|.|+.+| .+|+|.+||.|
T Consensus 1283 g~I~f~nVsf~Y~~~~~~vL~~is~~I-----~~GekiaIVGrT-----GsGKSTL~~lL~rl~~~---~~G~I~IdG~d 1349 (1522)
T TIGR00957 1283 GRVEFRNYCLRYREDLDLVLRHINVTI-----HGGEKVGIVGRT-----GAGKSSLTLGLFRINES---AEGEIIIDGLN 1349 (1522)
T ss_pred CcEEEEEEEEEeCCCCcccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCccC---CCCeEEECCEE
Confidence 568999999999655567999999999 788888888776 89999999999999998 58999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~ 164 (622)
+.. .+|+++++|||++.+|+. |++|||.... ..+++ .+.++++..++. +..|+.+++
T Consensus 1350 I~~i~~~~LR~~i~iVpQdp~LF~g-TIr~NLdp~~------~~sde----ei~~al~~a~l~~~I~~lp~GLdt~v~e- 1417 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQDPVLFSG-SLRMNLDPFS------QYSDE----EVWWALELAHLKTFVSALPDKLDHECAE- 1417 (1522)
T ss_pred ccccCHHHHHhcCeEECCCCcccCc-cHHHHcCccc------CCCHH----HHHHHHHHcCcHHHHhhCccCCCceecC-
Confidence 975 489999999999999987 9999996321 11222 345566666654 345777765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|++.. .++|+|+++|++ +. ..-+|||+
T Consensus 1418 ---~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~--~~~TvI~IAHRl-~t-i~~~DrIl 1490 (1522)
T TIGR00957 1418 ---GGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQF--EDCTVLTIAHRL-NT-IMDYTRVI 1490 (1522)
T ss_pred ---CCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HH-HHhCCEEE
Confidence 124599999999999999999999999999999999999999999999875 479999999997 34 45799999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++++
T Consensus 1491 Vld~G~IvE~G~~~eLl~ 1508 (1522)
T TIGR00957 1491 VLDKGEVAEFGAPSNLLQ 1508 (1522)
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998863
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-34 Score=273.04 Aligned_cols=163 Identities=25% Similarity=0.311 Sum_probs=140.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++|++++|. ++.++++++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.++|.
T Consensus 1 i~~~~~~~~~~-~~~~~l~~i~l~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~G~~~~---~~G~i~~~~~--- 63 (166)
T cd03223 1 IELENLSLATP-DGRVLLKDLSFEI-----KPGDRLLITGPS-----GTGKSSLFRALAGLWPW---GSGRIGMPEG--- 63 (166)
T ss_pred CEEEEEEEEcC-CCCeeeecCeEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECCC---
Confidence 35789999873 3357999999999 677788888777 89999999999999998 4899999874
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+.++|++|++.++ ..||+||+.+. .... ||||||
T Consensus 64 ----~~i~~~~q~~~~~-~~tv~~nl~~~---------------------------------~~~~--------LS~G~~ 97 (166)
T cd03223 64 ----EDLLFLPQRPYLP-LGTLREQLIYP---------------------------------WDDV--------LSGGEQ 97 (166)
T ss_pred ----ceEEEECCCCccc-cccHHHHhhcc---------------------------------CCCC--------CCHHHH
Confidence 5799999998765 67999998653 1223 999999
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||++|||+|+.+|++++|||||+|||+.++..+.+.++++ +.|+|++||++ +. .+.||++++|++|
T Consensus 98 ~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~----~~tiiivsh~~-~~-~~~~d~i~~l~~~ 163 (166)
T cd03223 98 QRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL----GITVISVGHRP-SL-WKFHDRVLDLDGE 163 (166)
T ss_pred HHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh----CCEEEEEeCCh-hH-HhhCCEEEEEcCC
Confidence 9999999999999999999999999999999999999875 58999999997 34 5799999999865
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-33 Score=272.31 Aligned_cols=231 Identities=23% Similarity=0.261 Sum_probs=198.0
Q ss_pred CcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||..+. ++ +++|++|||++ ++|+.-+|.||| |||||||.++|+|.-.... ++|+|.++|++
T Consensus 3 ~L~I~dLhv~v--~~~keILkgvnL~v-----~~GEvhaiMGPN-----GsGKSTLa~~i~G~p~Y~V-t~G~I~~~Ged 69 (251)
T COG0396 3 MLEIKDLHVEV--EGKKEILKGVNLTV-----KEGEVHAIMGPN-----GSGKSTLAYTIMGHPKYEV-TEGEILFDGED 69 (251)
T ss_pred eeEEeeeEEEe--cCchhhhcCcceeE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCceE-ecceEEECCcc
Confidence 57889999985 44 58999999999 677777777777 8999999999999876543 79999999999
Q ss_pred cCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCc
Q psy2519 96 VEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQK 169 (622)
Q Consensus 96 ~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~ 169 (622)
+.. ..|..+..-||.|.=+|..|+.+-|..+............+..+++++.++.+++.+ .+++.+..
T Consensus 70 I~~l~~~ERAr~GifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~------ 143 (251)
T COG0396 70 ILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNE------ 143 (251)
T ss_pred cccCCHhHHHhcCCEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCC------
Confidence 865 368889999999999999999999988765532211012345667889999999976 67887766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc--cceeeec
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF--DKIILLA 247 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~--D~v~~L~ 247 (622)
|+|||||||..|+..++.+|++.+||||-||||..+-..|.+.+++++. .|.+++++||.. ++.+.. |++.+|.
T Consensus 144 -GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~-~~~~~liITHy~--rll~~i~pD~vhvl~ 219 (251)
T COG0396 144 -GFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALRE-EGRGVLIITHYQ--RLLDYIKPDKVHVLY 219 (251)
T ss_pred -CcCcchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhc-CCCeEEEEecHH--HHHhhcCCCEEEEEE
Confidence 6999999999999999999999999999999999999999999999997 699999999984 677776 9999999
Q ss_pred CCceEEecChHHHHHHHHhCCCCC
Q psy2519 248 DSRTAFIGSKDAALAFLESQGYPC 271 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~~~~~~g~~~ 271 (622)
+|+|+..|.+ ++.+.++..||.|
T Consensus 220 ~GrIv~sG~~-el~~~le~~gy~~ 242 (251)
T COG0396 220 DGRIVKSGDP-ELAEELEEKGYDW 242 (251)
T ss_pred CCEEEecCCH-HHHHHHHHhchHH
Confidence 9999999999 8889999888864
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=323.53 Aligned_cols=208 Identities=20% Similarity=0.253 Sum_probs=168.2
Q ss_pred CCcccCCcccccccc---ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVG---SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g---~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..++++||+|+|+.. +.++|+++|+++ ++|+.+.++|++ |||||||+++|+|+.+| .+|+|.+|
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i-----~~G~~~aivG~s-----GsGKSTl~~ll~g~~~p---~~G~i~~~ 402 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRI-----AQGDIVFIVGEN-----GCGKSTLAKLFCGLYIP---QEGEILLD 402 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEEC
Confidence 458899999998432 236999999999 678888888776 89999999999999999 59999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
|.++.. .+|+.++||+|++.+++. |++||. . + +..+++++++++.+++.+..+..... -..
T Consensus 403 g~~i~~~~~~~~~~~i~~v~q~~~lf~~-ti~~n~------~-~-----~~~~~~~~~~~~~~~l~~~~~~lp~g--~~t 467 (555)
T TIGR01194 403 GAAVSADSRDDYRDLFSAIFADFHLFDD-LIGPDE------G-E-----HASLDNAQQYLQRLEIADKVKIEDGG--FST 467 (555)
T ss_pred CEECCCCCHHHHHhhCcEEccChhhhhh-hhhccc------c-c-----chhHHHHHHHHHHcCCchhhcccccc--cCC
Confidence 999865 478899999999888765 788883 1 0 11234567889999987765443211 011
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH-HHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR-ELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~-~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++|||||+.+|++|+|||||++||+.+..++.+.+. ++.. .|+|+|++||++ +..+.||+|++|+
T Consensus 468 ~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~-~~~tiiiisH~~--~~~~~~d~i~~l~ 544 (555)
T TIGR01194 468 TTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKR-QGKTIIIISHDD--QYFELADQIIKLA 544 (555)
T ss_pred cccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHh-CCCEEEEEeccH--HHHHhCCEEEEEE
Confidence 23499999999999999999999999999999999999999998664 4544 689999999997 3567899999999
Q ss_pred CCceEEe
Q psy2519 248 DSRTAFI 254 (622)
Q Consensus 248 ~G~iv~~ 254 (622)
+|+++..
T Consensus 545 ~G~i~~~ 551 (555)
T TIGR01194 545 AGCIVKD 551 (555)
T ss_pred CCEEEEe
Confidence 9999853
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=338.60 Aligned_cols=227 Identities=23% Similarity=0.300 Sum_probs=206.1
Q ss_pred EEeecCCcccCCcccccccccee-eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 11 VILFKNNEEVPNVDFSEIVGSVQ-VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~g~~~-~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
...+...+.++|+++.| |+.. +++++++.| ++++.+.++|+| ||||||++|+|+|..+| ++|++
T Consensus 558 ~~~~~~~~~~~~L~k~y--~~~~~Av~~ls~~V-----~~gecfgLLG~N-----GAGKtT~f~mltG~~~~---t~G~a 622 (885)
T KOG0059|consen 558 RSSYSSALVLNNLSKVY--GGKDGAVRGLSFAV-----PPGECFGLLGVN-----GAGKTTTFKMLTGETKP---TSGEA 622 (885)
T ss_pred cccccceEEEcceeeee--cchhhhhcceEEEe-----cCCceEEEecCC-----CCCchhhHHHHhCCccC---CcceE
Confidence 34556788899999997 4443 899999999 789999999888 79999999999999999 59999
Q ss_pred EECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc
Q psy2519 90 RVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 90 ~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~ 164 (622)
.++|.++.. +.++.+||+||+|.+.+.+|.+|++.+.+++++ .+..+.++.++++++.+||.+.+++.++.
T Consensus 623 ~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~lT~rEhL~~~arlrG---~~~~di~~~v~~ll~~~~L~~~~~~~~~~- 698 (885)
T KOG0059|consen 623 LIKGHDITVSTDFQQVRKQLGYCPQFDALWEELTGREHLEFYARLRG---LPRSDIGSAIEKLLRLVGLGPYANKQVRT- 698 (885)
T ss_pred EEecCccccccchhhhhhhcccCCchhhhhhhccHHHHHHHHHHHcC---CChhHHHHHHHHHHHHcCChhhhccchhh-
Confidence 999999864 278999999999999999999999999999985 34455667799999999999999999988
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+|||+|||+++|.||+.+|++++|||||+|+||.++++++++++++.+ +|+.||+|||.+ +|.+.+|||+.
T Consensus 699 -------ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k-~g~aiiLTSHsM-eE~EaLCtR~a 769 (885)
T KOG0059|consen 699 -------YSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRK-NGKAIILTSHSM-EEAEALCTRTA 769 (885)
T ss_pred -------CCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEcCCH-HHHHHHhhhhh
Confidence 999999999999999999999999999999999999999999999998 677999999995 79999999999
Q ss_pred eecCCceEEecChHHHHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+|.+|++...|+++++...|.
T Consensus 770 Imv~G~l~ciGs~q~LKsrfG 790 (885)
T KOG0059|consen 770 IMVIGQLRCIGSPQELKSRYG 790 (885)
T ss_pred eeecCeeEEecChHHHHhhcC
Confidence 999999999999999986654
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-34 Score=320.46 Aligned_cols=198 Identities=18% Similarity=0.173 Sum_probs=170.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++++| ++. .|+++|+++ .+|+.+.++|+| |||||||+++|+|+++| .+|+|.++
T Consensus 340 ~l~~~~ls~~~--~~~-~l~~~s~~i-----~~Geiv~l~G~N-----GsGKSTLlk~L~Gl~~p---~~G~I~~~---- 399 (590)
T PRK13409 340 LVEYPDLTKKL--GDF-SLEVEGGEI-----YEGEVIGIVGPN-----GIGKTTFAKLLAGVLKP---DEGEVDPE---- 399 (590)
T ss_pred EEEEcceEEEE--CCE-EEEecceEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEEe----
Confidence 47889999986 444 489999998 677888888887 89999999999999998 48999986
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
..+||++|+..+.+.+||+|++.+..... .. ...++++++.++|.+..++.+.+ |||||
T Consensus 400 -----~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~-----~~---~~~~~~~L~~l~l~~~~~~~~~~--------LSGGe 458 (590)
T PRK13409 400 -----LKISYKPQYIKPDYDGTVEDLLRSITDDL-----GS---SYYKSEIIKPLQLERLLDKNVKD--------LSGGE 458 (590)
T ss_pred -----eeEEEecccccCCCCCcHHHHHHHHhhhc-----Ch---HHHHHHHHHHCCCHHHHhCCccc--------CCHHH
Confidence 25999999988889999999998753211 11 12467899999999888888777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
||||+||++|+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ .++..+|||+++|+ |++...|.
T Consensus 459 ~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~-~~~~~~aDrvivl~-~~~~~~g~ 536 (590)
T PRK13409 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI-YMIDYISDRLMVFE-GEPGKHGH 536 (590)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEc-Ccceeeee
Confidence 99999999999999999999999999999999999999999876689999999996 68888999999995 58877766
Q ss_pred h
Q psy2519 257 K 257 (622)
Q Consensus 257 ~ 257 (622)
.
T Consensus 537 ~ 537 (590)
T PRK13409 537 A 537 (590)
T ss_pred c
Confidence 3
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-34 Score=302.24 Aligned_cols=227 Identities=24% Similarity=0.327 Sum_probs=190.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++++++.-+-.++++++++|+++ .+|+...|+|| ||||||||.|+|.|..+| .+|.|.+||.+
T Consensus 333 g~L~Ve~l~~~PPg~~~pil~~isF~l-----~~G~~lgIIGP-----SgSGKSTLaR~lvG~w~p---~~G~VRLDga~ 399 (580)
T COG4618 333 GALSVERLTAAPPGQKKPILKGISFAL-----QAGEALGIIGP-----SGSGKSTLARLLVGIWPP---TSGSVRLDGAD 399 (580)
T ss_pred ceeeEeeeeecCCCCCCcceecceeEe-----cCCceEEEECC-----CCccHHHHHHHHHccccc---CCCcEEecchh
Confidence 456789999975445579999999999 67888888866 489999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+.. ++.++|||+||+-.||+. ||.|||.=......+.++-+..+.+.+.+++- .+.+-.|+.+|+ - ..+
T Consensus 400 l~qWd~e~lG~hiGYLPQdVeLF~G-TIaeNIaRf~~~~d~~kIieAA~lAgvHelIl--~lP~GYdT~iG~--~--G~~ 472 (580)
T COG4618 400 LRQWDREQLGRHIGYLPQDVELFDG-TIAENIARFGEEADPEKVIEAARLAGVHELIL--RLPQGYDTRIGE--G--GAT 472 (580)
T ss_pred hhcCCHHHhccccCcCcccceecCC-cHHHHHHhccccCCHHHHHHHHHHcChHHHHH--hCcCCccCccCC--C--CCC
Confidence 865 488999999999889887 99999954432222222222334445666664 567788999997 2 356
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||||||||+++||||-.||.+++||||-++||......+.+.|.++++ +|.|+|+++|.| .+...+|+|++|++|++
T Consensus 473 LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~-rG~~vvviaHRP--s~L~~~Dkilvl~~G~~ 549 (580)
T COG4618 473 LSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKA-RGGTVVVIAHRP--SALASVDKILVLQDGRI 549 (580)
T ss_pred CCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHH-cCCEEEEEecCH--HHHhhcceeeeecCChH
Confidence 999999999999999999999999999999999999999999999987 799999999998 56788999999999999
Q ss_pred EEecChHHHHHHHH
Q psy2519 252 AFIGSKDAALAFLE 265 (622)
Q Consensus 252 v~~G~~~~~~~~~~ 265 (622)
-.+|+.+|++....
T Consensus 550 ~~FG~r~eVLa~~~ 563 (580)
T COG4618 550 AAFGPREEVLAKVL 563 (580)
T ss_pred HhcCCHHHHHHHhc
Confidence 99999999887654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=319.22 Aligned_cols=205 Identities=21% Similarity=0.224 Sum_probs=170.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 323 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~i~G~~~p---~~G~i~~~~~- 386 (556)
T PRK11819 323 KVIEAENLSKSF--GDRLLIDDLSFSL-----PPGGIVGIIGPN-----GAGKSTLFKMITGQEQP---DSGTIKIGET- 386 (556)
T ss_pred eEEEEEeEEEEE--CCeeeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECCc-
Confidence 368899999986 6677999999999 678888888887 89999999999999998 5899999542
Q ss_pred cCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccC
Q psy2519 96 VEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLS 173 (622)
..+|||+|+. .+++.+||.||+.+....... ... ...++++++.+|+.+ ..++.+++ ||
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~--~~~~~~~l~~~~l~~~~~~~~~~~--------LS 447 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKV---GNR--EIPSRAYVGRFNFKGGDQQKKVGV--------LS 447 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccc---ccc--HHHHHHHHHhCCCChhHhcCchhh--------CC
Confidence 2599999986 788999999999986533211 111 123457899999964 56888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-CceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G~iv 252 (622)
|||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ +++.++||++++|++ |++.
T Consensus 448 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-tvi~vtHd~-~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 448 GGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP---G-CAVVISHDR-WFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC---C-eEEEEECCH-HHHHHhCCEEEEEECCCeEE
Confidence 999999999999999999999999999999999999999999872 4 899999996 688899999999985 7876
Q ss_pred -EecChHHH
Q psy2519 253 -FIGSKDAA 260 (622)
Q Consensus 253 -~~G~~~~~ 260 (622)
+.|+.++.
T Consensus 523 ~~~g~~~~~ 531 (556)
T PRK11819 523 WFEGNFQEY 531 (556)
T ss_pred EecCCHHHH
Confidence 56766543
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-33 Score=260.62 Aligned_cols=221 Identities=20% Similarity=0.265 Sum_probs=191.7
Q ss_pred CcccCCcccccccc-----c--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE
Q psy2519 17 NEEVPNVDFSEIVG-----S--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI 89 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-----~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I 89 (622)
.++|+|++|++.+. . ..+++-||+++ .++....+||.| |||||||.|+|+|..+| ++|+|
T Consensus 4 LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL-----~~~QTlaiIG~N-----GSGKSTLakMlaGmi~P---TsG~i 70 (267)
T COG4167 4 LLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTL-----REGQTLAIIGEN-----GSGKSTLAKMLAGMIEP---TSGEI 70 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhhcccceEEEe-----cCCcEEEEEccC-----CCcHhHHHHHHhcccCC---CCceE
Confidence 46899999987532 2 56789999999 456666777666 89999999999999999 59999
Q ss_pred EECCEecCc----cccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-CcccCCccC
Q psy2519 90 RVNGKPVEG----KFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIG 162 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~ 162 (622)
++||+++.- ...++|-++|||+ .+.|.+.+-+-+..+.++.. ..+..++.+++-+.|..+|| .+.++-++.
T Consensus 71 l~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~T--~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~ 148 (267)
T COG4167 71 LINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLNT--DLEPEQRRKQIFETLRMVGLLPDHANYYPH 148 (267)
T ss_pred EECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcchhhhcc--cCChHHHHHHHHHHHHHhccCccccccchh
Confidence 999999853 2457899999997 58899999988888776653 45667788899999999999 556777755
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
. ||-||||||++||||+.+|++++.||..++||...+.++.++..++.++.|.+-|.|+.+. .-+.+++|.
T Consensus 149 ~--------la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~Qhl-G~iKHi~D~ 219 (267)
T COG4167 149 M--------LAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHI-GMIKHISDQ 219 (267)
T ss_pred h--------cCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechh-hHhhhhccc
Confidence 5 9999999999999999999999999999999999999999999999998999999999996 689999999
Q ss_pred eeeecCCceEEecChHHHH
Q psy2519 243 IILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~ 261 (622)
|++|++|++++.|++.+++
T Consensus 220 viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 220 VLVMHEGEVVERGSTADVL 238 (267)
T ss_pred EEEEecCceeecCChhhhh
Confidence 9999999999999999775
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-34 Score=348.01 Aligned_cols=213 Identities=18% Similarity=0.300 Sum_probs=169.9
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE-CCE
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV-NGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~-~G~ 94 (622)
.++++||+|+|+.+ +.++|+++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.+ +|.
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i-----~~Ge~vaIvG~S-----GsGKSTLl~lL~gl~~p---~~G~I~i~~g~ 448 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTL-----TEGKTYAFVGES-----GCGKSTILKLIERLYDP---TEGDIIINDSH 448 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHHhccC---CCCeEEEeCCc
Confidence 58899999998533 357999999999 678888888776 89999999999999999 5999999 567
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC----------C----cc----------------------
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL----------D----RR---------------------- 134 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~----------~----~~---------------------- 134 (622)
++.. .+|+.||||+|++.+++. ||+|||.++..... + ..
T Consensus 449 ~i~~~~~~~lr~~Ig~V~Q~~~LF~~-TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 527 (1466)
T PTZ00265 449 NLKDINLKWWRSKIGVVSQDPLLFSN-SIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSN 527 (1466)
T ss_pred chhhCCHHHHHHhccEecccccchhc-cHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhccc
Confidence 7753 368899999999999875 99999999631100 0 00
Q ss_pred ---c---------cHHHHHHHHHHHHHHhCCCc-------ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEE
Q psy2519 135 ---V---------KAYQRIALINSLLIELGLMN-------SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195 (622)
Q Consensus 135 ---~---------~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlL 195 (622)
. ......+.+.++++.+++.+ ..|+.++.. ...||||||||++|||||+.+|++|||
T Consensus 528 ~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~----g~~LSGGQkQRiaIARAll~~P~ILlL 603 (1466)
T PTZ00265 528 TTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSN----ASKLSGGQKQRISIARAIIRNPKILIL 603 (1466)
T ss_pred ccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCC----CCcCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 0 00011245667777776643 345666651 234999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 196 DEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
||||++||+.+...+.+.|++++++.|+|+|+++|++ +.+ +.||+|++|++|
T Consensus 604 DEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrl-s~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 604 DEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRL-STI-RYANTIFVLSNR 655 (1466)
T ss_pred eCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCH-HHH-HhCCEEEEEeCC
Confidence 9999999999999999999999764589999999997 455 789999999986
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-33 Score=288.05 Aligned_cols=199 Identities=20% Similarity=0.195 Sum_probs=164.5
Q ss_pred CCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE---------
Q psy2519 21 PNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR--------- 90 (622)
Q Consensus 21 ~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~--------- 90 (622)
+||+|+| ++ ..++++++ .+ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.
T Consensus 4 ~~~~~~y--~~~~~~l~~i~-~i-----~~Ge~~~IvG~n-----GsGKSTLlk~l~Gl~~p---~~G~I~~~~~~~~~~ 67 (255)
T cd03236 4 DEPVHRY--GPNSFKLHRLP-VP-----REGQVLGLVGPN-----GIGKSTALKILAGKLKP---NLGKFDDPPDWDEIL 67 (255)
T ss_pred cCcceee--cCcchhhhcCC-CC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCcCC---CCceEeeccccchhh
Confidence 5788887 44 35889988 35 577788888877 89999999999999999 599996
Q ss_pred --ECCEecCc---c-c--cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 91 --VNGKPVEG---K-F--RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 91 --~~G~~~~~---~-~--r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++|+++.. . . +..++|++|+..+++. ++.+++.+.. . ....++.+.++++.+||.+..++.+.
T Consensus 68 ~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~~~i~~~l--~------~~~~~~~~~~~l~~~gl~~~~~~~~~ 138 (255)
T cd03236 68 DEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK-AVKGKVGELL--K------KKDERGKLDELVDQLELRHVLDRNID 138 (255)
T ss_pred hhccCchhhhhhHHhhhcccceeeecchhccCch-HHHHHHHHHh--c------hhHHHHHHHHHHHHcCCchhhcCChh
Confidence 88888743 1 1 1247999999888885 8888887642 1 12234567899999999888888766
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||||||++|||+|+.+|+++++||||+|||+.++..+.+.|+++++ +|+|||++||++ +.+.++||+
T Consensus 139 ~--------LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~-~~~tIIiiSHd~-~~~~~~ad~ 208 (255)
T cd03236 139 Q--------LSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAE-DDNYVLVVEHDL-AVLDYLSDY 208 (255)
T ss_pred h--------CCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEECCH-HHHHHhCCE
Confidence 6 999999999999999999999999999999999999999999999987 589999999996 678789999
Q ss_pred eeeecCCceEEec
Q psy2519 243 IILLADSRTAFIG 255 (622)
Q Consensus 243 v~~L~~G~iv~~G 255 (622)
+++| +|++++.|
T Consensus 209 i~~l-~~~~~~~~ 220 (255)
T cd03236 209 IHCL-YGEPGAYG 220 (255)
T ss_pred EEEE-CCCCCcce
Confidence 9999 56676544
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=317.76 Aligned_cols=204 Identities=21% Similarity=0.239 Sum_probs=169.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.+++++||+++| ++.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 321 ~~l~~~~l~~~~--~~~~~l~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLl~~l~G~~~p---~~G~i~~~~~- 384 (552)
T TIGR03719 321 KVIEAENLSKGF--GDKLLIDDLSFKL-----PPGGIVGVIGPN-----GAGKSTLFRMITGQEQP---DSGTIKIGET- 384 (552)
T ss_pred eEEEEeeEEEEE--CCeeeeccceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCeEEEECCc-
Confidence 358899999986 6678999999999 677888888887 89999999999999998 5899999542
Q ss_pred cCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccC
Q psy2519 96 VEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLS 173 (622)
..+||++|++ .+++.+||.||+.++..... .... ..+++++++.+|+.+ ..++.+++ ||
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~---~~~~--~~~~~~~l~~~~l~~~~~~~~~~~--------LS 445 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQ---LGKR--EVPSRAYVGRFNFKGSDQQKKVGQ--------LS 445 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccc---cCcc--hHHHHHHHHhCCCChhHhcCchhh--------CC
Confidence 2599999986 58889999999998653221 1111 123557899999964 56888777 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC-CceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD-SRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~-G~iv 252 (622)
|||||||+|||+|+.+|++|||||||+|||+.++..+.+.|+++. | |||++|||+ +.+.++||++++|++ |+++
T Consensus 446 gGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~---~-~viivsHd~-~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 446 GGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA---G-CAVVISHDR-WFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC---C-eEEEEeCCH-HHHHHhCCEEEEEECCCeEE
Confidence 999999999999999999999999999999999999999999872 4 899999996 688899999999986 5876
Q ss_pred -EecChHH
Q psy2519 253 -FIGSKDA 259 (622)
Q Consensus 253 -~~G~~~~ 259 (622)
+.|+.++
T Consensus 521 ~~~g~~~~ 528 (552)
T TIGR03719 521 WFEGNYSE 528 (552)
T ss_pred EeCCCHHH
Confidence 5566543
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=348.62 Aligned_cols=213 Identities=18% Similarity=0.237 Sum_probs=181.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+++|..+..++|+++|+++ ++|+++.|+|++ |||||||+++|.|+.++ +|+|.+||.+
T Consensus 1216 g~I~f~nVs~~Y~~~~~~vL~~is~~I-----~~GekvaIvGrS-----GsGKSTLl~lL~rl~~~----~G~I~IdG~d 1281 (1490)
T TIGR01271 1216 GQMDVQGLTAKYTEAGRAVLQDLSFSV-----EGGQRVGLLGRT-----GSGKSTLLSALLRLLST----EGEIQIDGVS 1281 (1490)
T ss_pred CeEEEEEEEEEeCCCCcceeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhhcCC----CcEEEECCEE
Confidence 458899999999666678999999999 788888888776 89999999999999853 8999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCCc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGSS 164 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~~ 164 (622)
+.. .+|++++||||++.+|+. |++|||.... ..+ .+.+.++++.++|.+ ..|+.+++
T Consensus 1282 i~~i~~~~lR~~is~IpQdp~LF~G-TIR~NLdp~~------~~t----deei~~aL~~~~L~~~i~~lp~GLdt~v~e- 1349 (1490)
T TIGR01271 1282 WNSVTLQTWRKAFGVIPQKVFIFSG-TFRKNLDPYE------QWS----DEEIWKVAEEVGLKSVIEQFPDKLDFVLVD- 1349 (1490)
T ss_pred cccCCHHHHHhceEEEeCCCccCcc-CHHHHhCccc------CCC----HHHHHHHHHHCCCHHHHHhCcccccccccc-
Confidence 875 489999999999999987 9999995421 112 234567777777743 45667765
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|+||+|||||++||+.+...|.+.|++.. .++|||+++|.+ +. ...||||+
T Consensus 1350 ---~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~--~~~TvI~IaHRl-~t-i~~~DrIl 1422 (1490)
T TIGR01271 1350 ---GGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSF--SNCTVILSEHRV-EA-LLECQQFL 1422 (1490)
T ss_pred ---CCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HH-HHhCCEEE
Confidence 124599999999999999999999999999999999999999999999975 479999999997 34 45699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|+++..|+++++.
T Consensus 1423 vL~~G~ivE~g~p~~Ll 1439 (1490)
T TIGR01271 1423 VIEGSSVKQYDSIQKLL 1439 (1490)
T ss_pred EEECCEEEEeCCHHHHH
Confidence 99999999999999876
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-34 Score=300.74 Aligned_cols=222 Identities=23% Similarity=0.349 Sum_probs=179.9
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|.|..| +++|+|+|+++ .+|+.++++|+ ||+||||++|+|.....- .+|.|.+||+
T Consensus 535 ~G~i~fsnvtF~Y~p~-k~vl~disF~v-----~pGktvAlVG~-----SGaGKSTimRlLfRffdv---~sGsI~iDgq 600 (790)
T KOG0056|consen 535 QGKIEFSNVTFAYDPG-KPVLSDISFTV-----QPGKTVALVGP-----SGAGKSTIMRLLFRFFDV---NSGSITIDGQ 600 (790)
T ss_pred CCeEEEEEeEEecCCC-CceeecceEEe-----cCCcEEEEECC-----CCCchhHHHHHHHHHhhc---cCceEEEcCc
Confidence 5678999999999655 57999999999 45555555544 599999999999998876 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
|+.. .+|+.||.||||..||.+ |+..||.|+..-..+..+....+.+.+.+ +.++..+..++++|+. + =
T Consensus 601 dIrnvt~~SLRs~IGVVPQDtvLFNd-TI~yNIryak~~AsneevyaAAkAA~IHd--rIl~fPegY~t~VGER--G--L 673 (790)
T KOG0056|consen 601 DIRNVTQSSLRSSIGVVPQDTVLFND-TILYNIRYAKPSASNEEVYAAAKAAQIHD--RILQFPEGYNTRVGER--G--L 673 (790)
T ss_pred hHHHHHHHHHHHhcCcccCcceeecc-eeeeheeecCCCCChHHHHHHHHHhhHHH--HHhcCchhhhhhhhhc--c--c
Confidence 9975 589999999999988876 99999999632222111111222222222 2357788889999982 1 1
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
-|||||||||+|||+++++|.+++|||.||+||..+.+.|...|.++++ |+|-|++.|..+ .+ --+|.|+++++|+
T Consensus 674 kLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca--~RTtIVvAHRLS-Ti-vnAD~ILvi~~G~ 749 (790)
T KOG0056|consen 674 KLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCA--NRTTIVVAHRLS-TI-VNADLILVISNGR 749 (790)
T ss_pred ccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhc--CCceEEEeeeeh-he-ecccEEEEEeCCe
Confidence 2899999999999999999999999999999999999999999999996 789999999974 44 3699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
|++.|..+|++
T Consensus 750 IvErG~HeeLl 760 (790)
T KOG0056|consen 750 IVERGRHEELL 760 (790)
T ss_pred EeecCcHHHHH
Confidence 99999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-33 Score=315.75 Aligned_cols=203 Identities=22% Similarity=0.306 Sum_probs=171.7
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||+++| |+.++++++|+++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.+++.
T Consensus 311 ~~l~~~~l~~~y--~~~~il~~isl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~G~~~p---~~G~i~~~~~- 374 (638)
T PRK10636 311 PLLKMEKVSAGY--GDRIILDSIKLNL-----VPGSRIGLLGRN-----GAGKSTLIKLLAGELAP---VSGEIGLAKG- 374 (638)
T ss_pred ceEEEEeeEEEe--CCeeeeccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEEECCC-
Confidence 357899999986 6678999999999 678888888887 79999999999999998 5899999742
Q ss_pred cCccccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcccc
Q psy2519 96 VEGKFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gL 172 (622)
..+||++|+. .+.+..|+.+++.- .. + ....+++.++++.+++. +..++++++ |
T Consensus 375 ------~~igy~~Q~~~~~l~~~~~~~~~~~~---~~-----~-~~~~~~~~~~L~~~~l~~~~~~~~~~~--------L 431 (638)
T PRK10636 375 ------IKLGYFAQHQLEFLRADESPLQHLAR---LA-----P-QELEQKLRDYLGGFGFQGDKVTEETRR--------F 431 (638)
T ss_pred ------EEEEEecCcchhhCCccchHHHHHHH---hC-----c-hhhHHHHHHHHHHcCCChhHhcCchhh--------C
Confidence 3699999974 45667788887532 11 1 11235678999999996 467888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ .| |||+||||+ ..+.++||++++|++|+++
T Consensus 432 SgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~---~g-tvi~vSHd~-~~~~~~~d~i~~l~~G~i~ 506 (638)
T PRK10636 432 SGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF---EG-ALVVVSHDR-HLLRSTTDDLYLVHDGKVE 506 (638)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-eEEEEeCCH-HHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999987 24 999999995 7888999999999999997
Q ss_pred -EecChHHHHH
Q psy2519 253 -FIGSKDAALA 262 (622)
Q Consensus 253 -~~G~~~~~~~ 262 (622)
+.|+.++..+
T Consensus 507 ~~~g~~~~~~~ 517 (638)
T PRK10636 507 PFDGDLEDYQQ 517 (638)
T ss_pred EcCCCHHHHHH
Confidence 8899987644
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=312.76 Aligned_cols=204 Identities=24% Similarity=0.303 Sum_probs=170.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++++++|+++ .+|+.+.|+|+| ||||||||++|+|+.+| .+|+|.+ |.++
T Consensus 319 ~l~~~~l~~~~--~~~~il~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~G~~~p---~~G~i~~-~~~~ 382 (635)
T PRK11147 319 VFEMENVNYQI--DGKQLVKDFSAQV-----QRGDKIALIGPN-----GCGKTTLLKLMLGQLQA---DSGRIHC-GTKL 382 (635)
T ss_pred eEEEeeeEEEE--CCeEEEcCcEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEE-CCCc
Confidence 57899999986 6678999999999 677788888887 79999999999999998 5899998 5432
Q ss_pred CccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccCh
Q psy2519 97 EGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSg 174 (622)
.+||++|+. .+++.+||.||+.+...... .. ....++.++++.+++. +..++.+++ |||
T Consensus 383 ------~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~~--------LSg 443 (635)
T PRK11147 383 ------EVAYFDQHRAELDPEKTVMDNLAEGKQEVM---VN--GRPRHVLGYLQDFLFHPKRAMTPVKA--------LSG 443 (635)
T ss_pred ------EEEEEeCcccccCCCCCHHHHHHhhccccc---cc--chHHHHHHHHHhcCCCHHHHhChhhh--------CCH
Confidence 599999975 68999999999987532110 01 1134577899999995 467888777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CCceEE
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DSRTAF 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G~iv~ 253 (622)
||||||+||++|+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||. ..+.++||++++++ +|++..
T Consensus 444 GekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~----~~tvi~vSHd~-~~~~~~~d~i~~l~~~g~i~~ 518 (635)
T PRK11147 444 GERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY----QGTVLLVSHDR-QFVDNTVTECWIFEGNGKIGR 518 (635)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC----CCeEEEEECCH-HHHHHhcCEEEEEeCCCeEEE
Confidence 9999999999999999999999999999999999999999875 34999999995 68889999999997 899855
Q ss_pred -ecChHHH
Q psy2519 254 -IGSKDAA 260 (622)
Q Consensus 254 -~G~~~~~ 260 (622)
.|+-++.
T Consensus 519 ~~g~y~~y 526 (635)
T PRK11147 519 YVGGYHDA 526 (635)
T ss_pred ccCCHHHH
Confidence 5666654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=247.50 Aligned_cols=195 Identities=22% Similarity=0.291 Sum_probs=168.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..++||+.. .++.-.|.++|+++ .+|+.+.+.|| |||||||||.-+.|.+.+....+|++++|++++
T Consensus 2 ~l~l~nvsl~--l~g~cLLa~~n~Ti-----a~GeivtlMGP-----SGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l 69 (213)
T COG4136 2 MLCLKNVSLR--LPGSCLLANVNFTI-----AKGEIVTLMGP-----SGCGKSTLLSWMIGALAGQFSCTGELWLNEQRL 69 (213)
T ss_pred ceeeeeeeec--CCCceEEEeeeEEe-----cCCcEEEEECC-----CCccHHHHHHHHHhhcccCcceeeEEEECCeec
Confidence 3567899875 46777899999999 56666666655 589999999999999998777899999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+|++|++|||+.+||+++|-+|+.|+... .++.+.+++.++..+++.||....++.+.+ |||
T Consensus 70 ~~lPa~qRq~GiLFQD~lLFphlsVg~Nl~fAlp~----~~KG~aRr~~a~aAL~~~gL~g~f~~dP~t--------lSG 137 (213)
T COG4136 70 DMLPAAQRQIGILFQDALLFPHLSVGQNLLFALPA----TLKGNARRNAANAALERSGLDGAFHQDPAT--------LSG 137 (213)
T ss_pred cccchhhhheeeeecccccccccccccceEEecCc----ccccHHHHhhHHHHHHHhccchhhhcChhh--------cCc
Confidence 75 4688999999999999999999999986432 233456777889999999999999988555 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
|||-||++-|+|+..|+.++||||+|.||..-+.+..+..-.-.++.|...|.+|||. .++
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~-~Dv 198 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDL-QDV 198 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEeccc-ccC
Confidence 9999999999999999999999999999999999999988777766899999999995 444
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.4e-32 Score=259.06 Aligned_cols=154 Identities=23% Similarity=0.240 Sum_probs=133.5
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKF 100 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~ 100 (622)
+||+++| |+.++++++ +++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|++
T Consensus 4 ~~l~~~~--~~~~~l~~~-~~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~----- 62 (177)
T cd03222 4 PDCVKRY--GVFFLLVEL-GVV-----KEGEVIGIVGPN-----GTGKTTAVKILAGQLIP---NGDNDEWDGIT----- 62 (177)
T ss_pred CCeEEEE--CCEEEEccC-cEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CCcEEEECCEE-----
Confidence 7899986 778888874 777 678888888887 89999999999999998 58999999863
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++|++|+.. ||||||||+
T Consensus 63 ---i~~~~q~~~-----------------------------------------------------------LSgGq~qrv 80 (177)
T cd03222 63 ---PVYKPQYID-----------------------------------------------------------LSGGELQRV 80 (177)
T ss_pred ---EEEEcccCC-----------------------------------------------------------CCHHHHHHH
Confidence 788887432 799999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe--cChH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI--GSKD 258 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~--G~~~ 258 (622)
+|||+|+.+|++++|||||+|||+.++..+.+.+++++++.+.|||++||++ +++.++||++++|+++-.++. |.|.
T Consensus 81 ~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~-~~~~~~~d~i~~l~~~~~~~~~~~~~~ 159 (177)
T cd03222 81 AIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDL-AVLDYLSDRIHVFEGEPGVYGIASQPK 159 (177)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCH-HHHHHhCCEEEEEcCCCccceeccCCc
Confidence 9999999999999999999999999999999999999874349999999996 678889999999998766654 5554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=9.7e-32 Score=308.87 Aligned_cols=206 Identities=18% Similarity=0.267 Sum_probs=166.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||++.|. ++.++++++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.+++.
T Consensus 507 ~~L~~~~ls~~y~-~~~~il~~vsl~i-----~~Ge~i~LvG~N-----GsGKSTLLk~L~Gll~p---~~G~I~~~~~- 571 (718)
T PLN03073 507 PIISFSDASFGYP-GGPLLFKNLNFGI-----DLDSRIAMVGPN-----GIGKSTILKLISGELQP---SSGTVFRSAK- 571 (718)
T ss_pred ceEEEEeeEEEeC-CCCeeEeccEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCceEEECCc-
Confidence 3578999999972 3456899999999 678888888887 89999999999999998 5899998752
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg 174 (622)
..+||++|+. .+.+++.++.........+ ... .++++++++.+|+.+ ..++.+++ |||
T Consensus 572 ------~~igyv~Q~~--~~~l~~~~~~~~~~~~~~~-~~~----~~~i~~~L~~~gl~~~~~~~~~~~--------LSg 630 (718)
T PLN03073 572 ------VRMAVFSQHH--VDGLDLSSNPLLYMMRCFP-GVP----EQKLRAHLGSFGVTGNLALQPMYT--------LSG 630 (718)
T ss_pred ------eeEEEEeccc--cccCCcchhHHHHHHHhcC-CCC----HHHHHHHHHHCCCChHHhcCCccc--------cCH
Confidence 4699999975 3456676665432211111 111 245778999999974 56777666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE-E
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-F 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~ 253 (622)
||||||+|||+|+.+|++|||||||+|||+.++..+.+.|++. .| |||++|||+ ..+..+||++++|++|+++ +
T Consensus 631 GqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~---~g-tvIivSHd~-~~i~~~~drv~~l~~G~i~~~ 705 (718)
T PLN03073 631 GQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF---QG-GVLMVSHDE-HLISGSVDELWVVSEGKVTPF 705 (718)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc---CC-EEEEEECCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999998888764 34 999999996 6888999999999999998 7
Q ss_pred ecChHHHHH
Q psy2519 254 IGSKDAALA 262 (622)
Q Consensus 254 ~G~~~~~~~ 262 (622)
.|+.++..+
T Consensus 706 ~g~~~~~~~ 714 (718)
T PLN03073 706 HGTFHDYKK 714 (718)
T ss_pred CCCHHHHHH
Confidence 888876544
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.9e-32 Score=309.19 Aligned_cols=208 Identities=21% Similarity=0.226 Sum_probs=165.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|..+| .+|+|.++|..
T Consensus 1 ~i~i~nls~~~--g~~~~l~~vs~~i-----~~Ge~v~LvG~N-----GsGKSTLLkiL~G~~~p---d~G~I~~~~~~- 64 (638)
T PRK10636 1 MIVFSSLQIRR--GVRVLLDNATATI-----NPGQKVGLVGKN-----GCGKSTLLALLKNEISA---DGGSYTFPGNW- 64 (638)
T ss_pred CEEEEEEEEEe--CCceeecCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEecCCC-
Confidence 36789999996 7788999999999 678888888887 79999999999999998 48999998852
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHH-----------------------HcCCC-ccccHHHHHHHHHHHHHHhC
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMA-----------------------LLKLD-RRVKAYQRIALINSLLIELG 152 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-----------------------~l~~~-~~~~~~~~~~~v~~~l~~lg 152 (622)
.+||++|+.... ..|+.+.+.-.. .+... ......+...+++++++.+|
T Consensus 65 ------~i~~~~q~~~~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lg 137 (638)
T PRK10636 65 ------QLAWVNQETPAL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLG 137 (638)
T ss_pred ------EEEEEecCCCCC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCC
Confidence 378888864332 246555442110 00000 00001123457889999999
Q ss_pred CC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 153 LM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 153 L~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+. +..++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.|||+||||
T Consensus 138 l~~~~~~~~~~~--------LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~----~~tviivsHd 205 (638)
T PRK10636 138 FSNEQLERPVSD--------FSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY----QGTLILISHD 205 (638)
T ss_pred CCchhhcCchhh--------cCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC----CCeEEEEeCC
Confidence 97 567888877 9999999999999999999999999999999999999999998874 4699999999
Q ss_pred CcHHHHhhccceeeecCCceE-EecChHHH
Q psy2519 232 PSSELIDMFDKIILLADSRTA-FIGSKDAA 260 (622)
Q Consensus 232 ~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 260 (622)
. ..+.++||++++|++|+++ |.|+.++.
T Consensus 206 ~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~ 234 (638)
T PRK10636 206 R-DFLDPIVDKIIHIEQQSLFEYTGNYSSF 234 (638)
T ss_pred H-HHHHHhcCEEEEEeCCEEEEecCCHHHH
Confidence 5 6888999999999999996 67776644
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.98 E-value=5e-32 Score=310.85 Aligned_cols=203 Identities=17% Similarity=0.169 Sum_probs=159.5
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.++++||++.|+ ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.+++
T Consensus 449 ~~~i~~~nv~~~~~-~~~~il~~isl~i-----~~Ge~~~IvG~n-----GsGKSTLl~lL~Gl~~~---~~G~i~~~~- 513 (659)
T TIGR00954 449 DNGIKFENIPLVTP-NGDVLIESLSFEV-----PSGNHLLICGPN-----GCGKSSLFRILGELWPV---YGGRLTKPA- 513 (659)
T ss_pred CCeEEEEeeEEECC-CCCeeeecceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCCeEeecC-
Confidence 35689999999874 3457999999999 678888888777 89999999999999987 489998864
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcC-CCCccccC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSS-ITQKVVLS 173 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~-~~~~~gLS 173 (622)
++.+|||+|++.+++. |++||+.++....... ......++++++++.+++.+..++..|-.. -+....||
T Consensus 514 ------~~~i~~v~Q~~~l~~~-tv~eni~~~~~~~~~~--~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LS 584 (659)
T TIGR00954 514 ------KGKLFYVPQRPYMTLG-TLRDQIIYPDSSEDMK--RRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLS 584 (659)
T ss_pred ------CCcEEEECCCCCCCCc-CHHHHHhcCCChhhhh--ccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCC
Confidence 5679999999988887 9999998864221100 000112456788999999776554321000 00123499
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||++|||+|+++|++++|||||+|||+.+..++.+.+++ .|+|+|++||++ +. .+.+|++++|+
T Consensus 585 gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~----~~~tvI~isH~~-~~-~~~~d~il~l~ 652 (659)
T TIGR00954 585 GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCRE----FGITLFSVSHRK-SL-WKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH----cCCEEEEEeCch-HH-HHhCCEEEEEe
Confidence 9999999999999999999999999999999999999988865 389999999997 34 57899999996
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=260.14 Aligned_cols=215 Identities=19% Similarity=0.248 Sum_probs=185.7
Q ss_pred cccCCccccc-cccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 18 EEVPNVDFSE-IVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 18 ~~~~~~~~~~-~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
..+.++.+.+ ......+|+|+|+++ .+|+.+.++|.| |||||||||+|+|..+| ++|+|.++|+-.
T Consensus 25 ~~~~~~~~~~~~~~~~~aL~disf~i-----~~Ge~vGiiG~N-----GaGKSTLlkliaGi~~P---t~G~v~v~G~v~ 91 (249)
T COG1134 25 KRLKGLAKGGRKVAEFWALKDISFEI-----YKGERVGIIGHN-----GAGKSTLLKLIAGIYKP---TSGKVKVTGKVA 91 (249)
T ss_pred HHHHHHhcCCCCcceEEEecCceEEE-----eCCCEEEEECCC-----CCcHHHHHHHHhCccCC---CCceEEEcceEe
Confidence 3344444332 234578999999999 688899999888 79999999999999999 599999999743
Q ss_pred CccccccEEEEec-CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 97 EGKFRSACGFMYQ-HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 97 ~~~~r~~igyV~Q-~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
.+.. .-.+-|.+|.+||+.+.+.+.. .++++.+++++++++.-+|.+..|.++.+ +|.|
T Consensus 92 ---------~li~lg~Gf~pelTGreNi~l~~~~~G---~~~~ei~~~~~eIieFaELG~fi~~Pvkt--------YSSG 151 (249)
T COG1134 92 ---------PLIELGAGFDPELTGRENIYLRGLILG---LTRKEIDEKVDEIIEFAELGDFIDQPVKT--------YSSG 151 (249)
T ss_pred ---------hhhhcccCCCcccchHHHHHHHHHHhC---ccHHHHHHHHHHHHHHHHHHHHhhCchhh--------ccHH
Confidence 2222 2346788999999999877653 46788889999999999999999999888 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|+-|+++|.+...+|++||+||-.+--|+.=+++-.+.++++.+ ++.|||+++||+ ..+.++|||++.|++|++...|
T Consensus 152 M~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~-~~~tiv~VSHd~-~~I~~~Cd~~i~l~~G~i~~~G 229 (249)
T COG1134 152 MYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVE-KNKTIVLVSHDL-GAIKQYCDRAIWLEHGQIRMEG 229 (249)
T ss_pred HHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEECCH-HHHHHhcCeeEEEeCCEEEEcC
Confidence 99999999999999999999999999999999999999999977 579999999996 7999999999999999999999
Q ss_pred ChHHHHHHHHhC
Q psy2519 256 SKDAALAFLESQ 267 (622)
Q Consensus 256 ~~~~~~~~~~~~ 267 (622)
+++++.+++...
T Consensus 230 ~~~~vi~~Y~~~ 241 (249)
T COG1134 230 SPEEVIPAYEED 241 (249)
T ss_pred CHHHHHHHHHHh
Confidence 999999877643
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-31 Score=248.85 Aligned_cols=143 Identities=30% Similarity=0.394 Sum_probs=129.0
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++|+++.| ++.++++++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 2 ~~~~l~~~~--~~~~~l~~~~~~~-----~~Ge~~~i~G~n-----GsGKStLl~~l~G~~~~---~~G~i~~~~~---- 62 (144)
T cd03221 2 ELENLSKTY--GGKLLLKDISLTI-----NPGDRIGLVGRN-----GAGKSTLLKLIAGELEP---DEGIVTWGST---- 62 (144)
T ss_pred EEEEEEEEE--CCceEEEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CceEEEECCe----
Confidence 578999986 5557999999999 677788888777 89999999999999998 5999999985
Q ss_pred cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 99 KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 99 ~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
+.++|++| ||+||+|
T Consensus 63 ---~~i~~~~~--------------------------------------------------------------lS~G~~~ 77 (144)
T cd03221 63 ---VKIGYFEQ--------------------------------------------------------------LSGGEKM 77 (144)
T ss_pred ---EEEEEEcc--------------------------------------------------------------CCHHHHH
Confidence 46899998 6999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|++|||+|+.+|+++++||||+|||+.++..+.+.++++ +.|++++||++ +++.+++|++++|++|+
T Consensus 78 rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----~~til~~th~~-~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 78 RLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----PGTVILVSHDR-YFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc----CCEEEEEECCH-HHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999999999999876 36999999996 68888999999999986
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-31 Score=247.69 Aligned_cols=215 Identities=20% Similarity=0.227 Sum_probs=171.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK- 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~- 94 (622)
..+++.++++.| |....+++||+.+ .+|+...|+|.+ ||||||||++|++++.| .+|+|.+.-+
T Consensus 5 PLL~V~~lsk~Y--g~~~gc~~vsF~l-----~PGeVLgiVGES-----GSGKtTLL~~is~rl~p---~~G~v~Y~~r~ 69 (258)
T COG4107 5 PLLSVSGLSKLY--GPGKGCRDVSFDL-----YPGEVLGIVGES-----GSGKTTLLKCISGRLTP---DAGTVTYRMRD 69 (258)
T ss_pred cceeehhhhhhh--CCCcCccccceee-----cCCcEEEEEecC-----CCcHHhHHHHHhcccCC---CCCeEEEEcCC
Confidence 457899999996 7777899999999 677777777664 89999999999999999 5899998543
Q ss_pred --ecC-----c-c----ccccEEEEecCCC--CCCCCC----HHHHH-HHHHHcCCCccccHHHHHHHHHHHHHHhCCCc
Q psy2519 95 --PVE-----G-K----FRSACGFMYQHDL--FSPSLT----VYEHL-YFMALLKLDRRVKAYQRIALINSLLIELGLMN 155 (622)
Q Consensus 95 --~~~-----~-~----~r~~igyV~Q~~~--l~~~lT----V~E~l-~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 155 (622)
+.. . + .|..-|||.|++. +-...+ +-|-+ +.+++.+ ...++.+.++++++.++.
T Consensus 70 ~~~~dl~~msEaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHY-------G~iR~~a~~WL~~VEI~~ 142 (258)
T COG4107 70 GQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHY-------GNIRAEAQDWLEEVEIDL 142 (258)
T ss_pred CCchhHhhhchHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhhhhhh-------hhHHHHHHHHHHhcccCc
Confidence 321 1 1 4667899999864 433333 23322 2233222 235666789999999854
Q ss_pred -ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 -SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 -~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
..|..+.. +|||||||+.|||-|++.|++.|+||||.|||...+..++++++.+..+.|.+++++|||. .
T Consensus 143 ~RiDD~Prt--------FSGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl-~ 213 (258)
T COG4107 143 DRIDDLPRT--------FSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDL-A 213 (258)
T ss_pred ccccCcccc--------cchHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechh-H
Confidence 34555333 9999999999999999999999999999999999999999999999988899999999996 5
Q ss_pred HHHhhccceeeecCCceEEecChHHHH
Q psy2519 235 ELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.+.-++||.++|++|++++.|-++.++
T Consensus 214 VarLla~rlmvmk~g~vve~GLTDrvL 240 (258)
T COG4107 214 VARLLADRLMVMKQGQVVESGLTDRVL 240 (258)
T ss_pred HHHHhhhcceeecCCCEeccccccccc
Confidence 666779999999999999999888664
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-31 Score=303.41 Aligned_cols=208 Identities=22% Similarity=0.284 Sum_probs=162.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|..
T Consensus 3 ~l~i~~ls~~~--~~~~il~~is~~i-----~~Ge~v~LvG~N-----GsGKSTLLriiaG~~~p---~~G~I~~~~~~- 66 (635)
T PRK11147 3 LISIHGAWLSF--SDAPLLDNAELHI-----EDNERVCLVGRN-----GAGKSTLMKILNGEVLL---DDGRIIYEQDL- 66 (635)
T ss_pred EEEEeeEEEEe--CCceeEeCcEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCC---CCeEEEeCCCC-
Confidence 46899999996 6778999999999 677888888887 89999999999999998 48999998732
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHH------------------------------HHHcCCC-ccccHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYF------------------------------MALLKLD-RRVKAYQRIALIN 145 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f------------------------------~~~l~~~-~~~~~~~~~~~v~ 145 (622)
.++|++|.+......+|.+++.. ....... ......+...+++
T Consensus 67 ------~~~~l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 140 (635)
T PRK11147 67 ------IVARLQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRIN 140 (635)
T ss_pred ------EEEEeccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHH
Confidence 25677775433333455554321 1100000 0000012345788
Q ss_pred HHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 146 ~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
++++.+|+.. ++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++ +.||
T Consensus 141 ~~l~~lgl~~--~~~~~~--------LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~----~~tv 206 (635)
T PRK11147 141 EVLAQLGLDP--DAALSS--------LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF----QGSI 206 (635)
T ss_pred HHHHhCCCCC--CCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC----CCEE
Confidence 9999999963 677666 9999999999999999999999999999999999999999999987 2499
Q ss_pred EEEeccCcHHHHhhccceeeecCCceE-EecChHHHH
Q psy2519 226 LCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAAL 261 (622)
Q Consensus 226 i~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~~ 261 (622)
|+||||+ ..+.++||+|++|++|+++ +.|+.++..
T Consensus 207 livsHd~-~~l~~~~d~i~~L~~G~i~~~~g~~~~~~ 242 (635)
T PRK11147 207 IFISHDR-SFIRNMATRIVDLDRGKLVSYPGNYDQYL 242 (635)
T ss_pred EEEeCCH-HHHHHhcCeEEEEECCEEEEecCCHHHHH
Confidence 9999995 6888999999999999997 568877543
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.6e-31 Score=252.62 Aligned_cols=161 Identities=25% Similarity=0.295 Sum_probs=133.1
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
++++++++|+++ .+|+.++++|+| |||||||||+|.+ .+|++.++|... ...++.++|++|
T Consensus 7 ~~~~l~~isl~i-----~~G~~~~l~G~n-----G~GKSTLl~~il~-------~~G~v~~~~~~~-~~~~~~~~~~~q- 67 (176)
T cd03238 7 NVHNLQNLDVSI-----PLNVLVVVTGVS-----GSGKSTLVNEGLY-------ASGKARLISFLP-KFSRNKLIFIDQ- 67 (176)
T ss_pred eeeeecceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhh-------cCCcEEECCccc-ccccccEEEEhH-
Confidence 367899999999 677777888776 8999999999963 379999988732 223445888877
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
.++++.++|.+ ..++++.+ ||||||||++||++|+.+
T Consensus 68 ----------------------------------~~~l~~~~L~~~~~~~~~~~--------LSgGq~qrl~laral~~~ 105 (176)
T cd03238 68 ----------------------------------LQFLIDVGLGYLTLGQKLST--------LSGGELQRVKLASELFSE 105 (176)
T ss_pred ----------------------------------HHHHHHcCCCccccCCCcCc--------CCHHHHHHHHHHHHHhhC
Confidence 14677888875 46777666 999999999999999999
Q ss_pred --CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 190 --PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 190 --P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|+++||||||+|||+.++..+.+.|+++++ .|+|||++||++ +++ +.||++++|.+|+....|
T Consensus 106 ~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~-~g~tvIivSH~~-~~~-~~~d~i~~l~~g~~~~~~ 170 (176)
T cd03238 106 PPGTLFILDEPSTGLHQQDINQLLEVIKGLID-LGNTVILIEHNL-DVL-SSADWIIDFGPGSGKSGG 170 (176)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEECCCCCCCCc
Confidence 999999999999999999999999999986 799999999997 455 689999999776554443
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.8e-31 Score=327.73 Aligned_cols=205 Identities=20% Similarity=0.257 Sum_probs=166.4
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++|++|+|+.. +.++|+|+|+++ ++|+.++++|++ |||||||+++|.|..+| .+|.+.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i-----~~Ge~vaIvG~s-----GSGKSTLl~lLlG~~~~---~~G~i~----- 675 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEI-----PVGSLVAIVGGT-----GEGKTSLISAMLGELSH---AETSSV----- 675 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCcc---cCCCEE-----
Confidence 57899999998532 467999999999 677788887775 89999999999999998 477653
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCCcCCCC
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGSSSITQ 168 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~~~~~~ 168 (622)
.+++.++||+|++.+++. |++|||.|+... ++ ++.+++++..+| ++..++.+|+ .
T Consensus 676 ---~~~~~Iayv~Q~p~Lf~g-TIreNI~fg~~~------~~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe----~ 737 (1495)
T PLN03232 676 ---VIRGSVAYVPQVSWIFNA-TVRENILFGSDF------ES----ERYWRAIDVTALQHDLDLLPGRDLTEIGE----R 737 (1495)
T ss_pred ---EecCcEEEEcCccccccc-cHHHHhhcCCcc------CH----HHHHHHHHHhCCHHHHHhCCCCCCceecC----C
Confidence 346789999999998875 999999997421 11 234445555554 3445677776 2
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...||||||||++||||+..+|+++|||||||+||+.+..++++. ++... .|+|+|++||++ ...+.+|+|++|+
T Consensus 738 G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l--~~kT~IlvTH~~--~~l~~aD~Ii~L~ 813 (1495)
T PLN03232 738 GVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDEL--KGKTRVLVTNQL--HFLPLMDRIILVS 813 (1495)
T ss_pred CcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhh--cCCEEEEEECCh--hhHHhCCEEEEEe
Confidence 345999999999999999999999999999999999999998765 55543 589999999997 3457899999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|+.+++.
T Consensus 814 ~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 814 EGMIKEEGTFAELS 827 (1495)
T ss_pred CCEEEEecCHHHHH
Confidence 99999999999875
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-31 Score=327.85 Aligned_cols=204 Identities=20% Similarity=0.261 Sum_probs=167.8
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee-eEEEECCE
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID-GDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~-G~I~~~G~ 94 (622)
.++++|++|+|..+ +.++|+++|+++ ++|+.++++|++ |||||||+++|.|..+| .+ |+|.+
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~inl~i-----~~Ge~vaIvG~s-----GSGKSTLl~lLlG~~~~---~~GG~I~l--- 677 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNINLDV-----PVGSLVAIVGST-----GEGKTSLISAMLGELPP---RSDASVVI--- 677 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeeceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHHHhhcc---CCCceEEE---
Confidence 58899999998533 367999999999 677788888775 89999999999999998 58 89975
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCcCCC
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~~~~ 167 (622)
+..++||+|++.++.. ||+|||.|+... + +++.+++++..+|. +..++.+|+
T Consensus 678 ------~~~Iayv~Q~p~Lfng-TIreNI~fg~~~------d----~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe---- 736 (1622)
T PLN03130 678 ------RGTVAYVPQVSWIFNA-TVRDNILFGSPF------D----PERYERAIDVTALQHDLDLLPGGDLTEIGE---- 736 (1622)
T ss_pred ------cCeEEEEcCccccCCC-CHHHHHhCCCcc------c----HHHHHHHHHHhCcHHHHHhCCCcccccccC----
Confidence 4579999999998865 999999997421 1 22345566655553 344677776
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
....||||||||++||||+..+|+++|||||||+||+.+..++++ .++.+. .|+|+|++||++ ...+.+|+|++|
T Consensus 737 ~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l--~~kTvIlVTH~l--~~l~~aD~Ii~L 812 (1622)
T PLN03130 737 RGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDEL--RGKTRVLVTNQL--HFLSQVDRIILV 812 (1622)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHh--cCCEEEEEECCH--hHHHhCCEEEEE
Confidence 234599999999999999999999999999999999999998864 566554 489999999997 456789999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+.+++.
T Consensus 813 ~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 813 HEGMIKEEGTYEELS 827 (1622)
T ss_pred eCCEEEEeCCHHHHH
Confidence 999999999999875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=297.89 Aligned_cols=195 Identities=25% Similarity=0.250 Sum_probs=160.4
Q ss_pred CCcccCC-ccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE---
Q psy2519 16 NNEEVPN-VDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR--- 90 (622)
Q Consensus 16 ~~~~~~~-~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~--- 90 (622)
...+++. +++.| |. ..+|++++ .+ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.
T Consensus 71 ~p~~~~~~~~~~y--g~~~~~L~~l~-~i-----~~Gev~gLvG~N-----GaGKSTLlkiL~G~l~p---~~G~i~~~~ 134 (590)
T PRK13409 71 LPEELEEEPVHRY--GVNGFKLYGLP-IP-----KEGKVTGILGPN-----GIGKTTAVKILSGELIP---NLGDYEEEP 134 (590)
T ss_pred CchhhccCceEEe--cCCceeEecCC-cC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCccccCCC
Confidence 3444544 88886 55 35899998 66 577788888887 89999999999999999 489997
Q ss_pred --------ECCEecCc---c---ccccEEEEecCCCCCCCC---CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC
Q psy2519 91 --------VNGKPVEG---K---FRSACGFMYQHDLFSPSL---TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 91 --------~~G~~~~~---~---~r~~igyV~Q~~~l~~~l---TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL 153 (622)
++|+++.. . .+..+++.+|...+.|.+ ||+|++... +.+++++++++.++|
T Consensus 135 ~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l 202 (590)
T PRK13409 135 SWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGL 202 (590)
T ss_pred cHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCC
Confidence 99998753 1 123466667654444433 999998631 123467899999999
Q ss_pred CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 154 ~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.+..|+.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++++ |+|||+++|++
T Consensus 203 ~~~~~~~~~~--------LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g~tvIivsHd~- 271 (590)
T PRK13409 203 ENILDRDISE--------LSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--GKYVLVVEHDL- 271 (590)
T ss_pred chhhcCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEEeCCH-
Confidence 9888999887 999999999999999999999999999999999999999999999975 89999999996
Q ss_pred HHHHhhccceeeecCC
Q psy2519 234 SELIDMFDKIILLADS 249 (622)
Q Consensus 234 ~~i~~~~D~v~~L~~G 249 (622)
+++..++|++++|.+|
T Consensus 272 ~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 272 AVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHhCCEEEEEeCC
Confidence 6888999999999764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.8e-31 Score=323.75 Aligned_cols=210 Identities=20% Similarity=0.302 Sum_probs=165.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|++|+|..++.++|+++|+++ ++|+.++++|++ ||||||||++|+|..+| .+|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i-----~~G~~v~IvG~~-----GsGKSTLl~~l~g~~~~---~~G~i~~~g--- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSI-----PEGALVAVVGQV-----GCGKSSLLSALLAEMDK---VEGHVHMKG--- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcc---CCcEEEECC---
Confidence 68899999998544467999999999 677788888776 89999999999999998 589999987
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHH--HHHHHHHHhCC-CcccCCccCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA--LINSLLIELGL-MNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~--~v~~~l~~lgL-~~~~~~~v~~~~~~~~~gLS 173 (622)
.+|||+|++.++ +.||+||+.|+... +++...+ ++.++.+.++. .+..++.+|+ ....||
T Consensus 700 ------~i~yv~Q~~~l~-~~Ti~eNI~~g~~~------~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~----~g~~LS 762 (1522)
T TIGR00957 700 ------SVAYVPQQAWIQ-NDSLRENILFGKAL------NEKYYQQVLEACALLPDLEILPSGDRTEIGE----KGVNLS 762 (1522)
T ss_pred ------EEEEEcCCcccc-CCcHHHHhhcCCcc------CHHHHHHHHHHhCCHHHHHhcCCCCCceecC----CCCCCC
Confidence 499999998876 46999999986321 1111111 11122333433 2233455555 123499
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH-hcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT-SQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~-~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||++|||||..+|++++|||||++||+.+..++.+.+.+.. ...|+|+|++||++ +.+ +.+|+|++|++|+++
T Consensus 763 GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~-~~l-~~~D~ii~l~~G~i~ 840 (1522)
T TIGR00957 763 GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGI-SYL-PQVDVIIVMSGGKIS 840 (1522)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCCh-hhh-hhCCEEEEecCCeEE
Confidence 999999999999999999999999999999999999999997542 12479999999997 344 569999999999999
Q ss_pred EecChHHHH
Q psy2519 253 FIGSKDAAL 261 (622)
Q Consensus 253 ~~G~~~~~~ 261 (622)
..|+.+++.
T Consensus 841 ~~g~~~~l~ 849 (1522)
T TIGR00957 841 EMGSYQELL 849 (1522)
T ss_pred eeCCHHHHH
Confidence 999998875
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-31 Score=245.56 Aligned_cols=187 Identities=23% Similarity=0.327 Sum_probs=164.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+.+.+|++.. .|+..++.++++++ .+|+.+.+-|+| |||||||||+|+|+.+| .+|+|.++|.++
T Consensus 2 ~L~a~~L~~~--R~e~~lf~~L~f~l-----~~Ge~~~i~G~N-----G~GKTtLLRilaGLl~p---~~G~v~~~~~~i 66 (209)
T COG4133 2 MLEAENLSCE--RGERTLFSDLSFTL-----NAGEALQITGPN-----GAGKTTLLRILAGLLRP---DAGEVYWQGEPI 66 (209)
T ss_pred cchhhhhhhc--cCcceeecceeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHcccCC---CCCeEEecCCCC
Confidence 3567888876 68889999999999 677788887777 79999999999999999 499999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
+. .+++.+-|+--++.+=+.|||.|||.|..+..... ..+.+.+.++.+||....|.+++. ||
T Consensus 67 ~~~~~~~~~~l~yLGH~~giK~eLTa~ENL~F~~~~~~~~------~~~~i~~Al~~vgL~g~~dlp~~~--------LS 132 (209)
T COG4133 67 QNVRESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSG------NAATIWEALAQVGLAGLEDLPVGQ--------LS 132 (209)
T ss_pred ccchhhHHHHHHHhhccccccchhhHHHHHHHHHHHhCCC------chhhHHHHHHHcCcccccccchhh--------cc
Confidence 76 25577888888889999999999999998776421 124577899999999999999888 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
-||||||+|||-++..+++-|||||+++||......+-.++..-++ .|-.||.+||||.
T Consensus 133 AGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~-~GGiVllttHq~l 191 (209)
T COG4133 133 AGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAA-QGGIVLLTTHQPL 191 (209)
T ss_pred hhHHHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhc-CCCEEEEecCCcc
Confidence 9999999999999999999999999999999999999999999887 6778999999984
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=275.58 Aligned_cols=223 Identities=23% Similarity=0.344 Sum_probs=180.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.....++||+|.| .+..++|.++|+++ .+|+++.++|+ ||+||||++++|-....+ .+|.|.+||+
T Consensus 260 ~g~v~F~~V~F~y-~~~r~iL~~isf~i-----~~g~tvAiVg~-----SG~gKsTI~rllfRFyD~---~sG~I~id~q 325 (497)
T COG5265 260 LGAVAFINVSFAY-DPRRPILNGISFTI-----PLGKTVAIVGE-----SGAGKSTILRLLFRFYDV---NSGSITIDGQ 325 (497)
T ss_pred cceEEEEEEEeec-cccchhhcCccccc-----cCccEEEEEeC-----CCCcHHHHHHHHHHHhCC---cCceEEEcch
Confidence 3567789999998 57788999999999 56777777766 489999999999999988 4999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
++.. .+|+.||.||||..|+.+ |...|+.++..-.....+....+...+.+.++ .+++..++.||+.. -.
T Consensus 326 dir~vtq~slR~aIg~VPQDtvLFND-ti~yni~ygr~~at~eev~aaa~~aqi~~fi~--~lP~gy~t~Vgerg-lk-- 399 (497)
T COG5265 326 DIRDVTQQSLRRAIGIVPQDTVLFND-TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQ--SLPEGYDTGVGERG-LK-- 399 (497)
T ss_pred hHHHhHHHHHHHHhCcCcccceehhh-hHHHHHhccCccccHHHHHHHHHHhhhhHHHH--hCchhhhcccchhe-ee--
Confidence 9865 489999999999888866 99999998742221111111112223334444 34677889998821 12
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||+++++|++|++||.||+||..+.+++...|++++ .|+|-+++.|..+ -+. -+|.|++|++|+
T Consensus 400 -lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~--~~rttlviahrls-ti~-~adeiivl~~g~ 474 (497)
T COG5265 400 -LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVS--AGRTTLVIAHRLS-TII-DADEIIVLDNGR 474 (497)
T ss_pred -ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHh--CCCeEEEEeehhh-hcc-CCceEEEeeCCE
Confidence 89999999999999999999999999999999999999999999998 4899999999974 443 589999999999
Q ss_pred eEEecChHHHHH
Q psy2519 251 TAFIGSKDAALA 262 (622)
Q Consensus 251 iv~~G~~~~~~~ 262 (622)
|++.|+.++++.
T Consensus 475 i~erg~h~~ll~ 486 (497)
T COG5265 475 IVERGTHEELLA 486 (497)
T ss_pred EEecCcHHHHHH
Confidence 999999998764
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-30 Score=242.47 Aligned_cols=153 Identities=33% Similarity=0.539 Sum_probs=135.2
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+++|+++.| .+.++++++|+++ .+|+.+.++|+| |||||||+++|+|.+++ .+|+|.++|.++..
T Consensus 1 ~~~~~~~~~--~~~~~l~~~~~~i-----~~g~~~~i~G~n-----GsGKStll~~l~g~~~~---~~G~i~~~~~~~~~ 65 (157)
T cd00267 1 EIENLSFRY--GGRTALDNVSLTL-----KAGEIVALVGPN-----GSGKSTLLRAIAGLLKP---TSGEILIDGKDIAK 65 (157)
T ss_pred CeEEEEEEe--CCeeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CccEEEECCEEccc
Confidence 367888886 3457999999999 577777788777 89999999999999988 48999999998753
Q ss_pred ----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 ----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 ----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.++|++| |||
T Consensus 66 ~~~~~~~~~i~~~~q--------------------------------------------------------------lS~ 83 (157)
T cd00267 66 LPLEELRRRIGYVPQ--------------------------------------------------------------LSG 83 (157)
T ss_pred CCHHHHHhceEEEee--------------------------------------------------------------CCH
Confidence 24577888888 799
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||+||++||++++.+|++++|||||+|||+.++..+.+.++++++ .++|++++||++ +++...||+++++++|+
T Consensus 84 G~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~-~~~tii~~sh~~-~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE-EGRTVIIVTHDP-ELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999999999999987 489999999996 68888899999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=283.65 Aligned_cols=207 Identities=22% Similarity=0.286 Sum_probs=173.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
++.++|++++| |..++++++++++ .+|.+..++|.| |||||||||+|+|...| .+|+|...+.
T Consensus 3 ~i~~~~ls~~~--g~~~l~~~~~l~~-----~~G~riGLvG~N-----GaGKSTLLkilaG~~~~---~~G~i~~~~~-- 65 (530)
T COG0488 3 MITLENLSLAY--GDRPLLENVSLTL-----NPGERIGLVGRN-----GAGKSTLLKILAGELEP---DSGEVTRPKG-- 65 (530)
T ss_pred eEEEeeeEEee--CCceeecCCccee-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCcC---CCCeEeecCC--
Confidence 56789999996 8899999999999 788899999888 79999999999999999 5899987542
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCC--Ccc-------------------------ccHHHHHHHHHHHHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL--DRR-------------------------VKAYQRIALINSLLI 149 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~--~~~-------------------------~~~~~~~~~v~~~l~ 149 (622)
-++||+.|++.+.+..||.+.+.-+..-.. ... ....+.+.++..++.
T Consensus 66 -----~~v~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~ 140 (530)
T COG0488 66 -----LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL 140 (530)
T ss_pred -----ceEEEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh
Confidence 369999999999999999998866432100 000 000112357788999
Q ss_pred HhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Q psy2519 150 ELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229 (622)
Q Consensus 150 ~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t 229 (622)
.+|+.+. ++.+++ ||||||.||++|++|+.+|++|||||||+.||..+..-+-+.|++. .| |+|+||
T Consensus 141 gLg~~~~-~~~~~~--------LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~---~g-tviiVS 207 (530)
T COG0488 141 GLGFPDE-DRPVSS--------LSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY---PG-TVIVVS 207 (530)
T ss_pred cCCCCcc-cCchhh--------cCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC---CC-cEEEEe
Confidence 9999877 888888 9999999999999999999999999999999999999999999864 57 999999
Q ss_pred ccCcHHHHhhccceeeecCCce-EEecChHH
Q psy2519 230 HQPSSELIDMFDKIILLADSRT-AFIGSKDA 259 (622)
Q Consensus 230 H~~~~~i~~~~D~v~~L~~G~i-v~~G~~~~ 259 (622)
|| +..+-+.|++|+-++.|++ .|.|.-+.
T Consensus 208 HD-R~FLd~V~t~I~~ld~g~l~~y~Gny~~ 237 (530)
T COG0488 208 HD-RYFLDNVATHILELDRGKLTPYKGNYSS 237 (530)
T ss_pred CC-HHHHHHHhhheEEecCCceeEecCCHHH
Confidence 99 7899999999999999987 45565553
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-29 Score=312.21 Aligned_cols=196 Identities=21% Similarity=0.308 Sum_probs=152.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 111 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~ 111 (622)
.++|+++|+++ ++|+.++++|+| ||||||||++|+|+.+| .+|+|.++| .++||+|++
T Consensus 439 ~~~l~~i~l~i-----~~G~~~~I~G~~-----GsGKSTLl~~l~G~~~~---~~G~i~~~g---------~iayv~Q~~ 496 (1490)
T TIGR01271 439 TPVLKNISFKL-----EKGQLLAVAGST-----GSGKSSLLMMIMGELEP---SEGKIKHSG---------RISFSPQTS 496 (1490)
T ss_pred CcceeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECC---------EEEEEeCCC
Confidence 46899999999 677778887776 89999999999999998 589999988 399999999
Q ss_pred CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 112 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 112 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
.+++. ||+||+.|+..... .......+....++.++.+. +..++.+|+. ...||||||||++||||++.+|+
T Consensus 497 ~l~~~-Ti~eNI~~g~~~~~-~~~~~~~~~~~L~~~l~~l~--~g~~t~vg~~----g~~LSgGqkqRi~lARAl~~~~~ 568 (1490)
T TIGR01271 497 WIMPG-TIKDNIIFGLSYDE-YRYTSVIKACQLEEDIALFP--EKDKTVLGEG----GITLSGGQRARISLARAVYKDAD 568 (1490)
T ss_pred ccCCc-cHHHHHHhccccch-HHHHHHHHHHhHHHHHHhcc--ccccccccCc----CCCcCHHHHHHHHHHHHHHcCCC
Confidence 98875 99999998743210 00000000001122233222 2223445541 23499999999999999999999
Q ss_pred eEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||||+|||+.++.++.+. ++++. .|+|+|++||++ ..+ +.||++++|++|+++..|+.+++.
T Consensus 569 illLDep~saLD~~~~~~i~~~~l~~~~--~~~tvilvtH~~-~~~-~~ad~ii~l~~g~i~~~g~~~~l~ 635 (1490)
T TIGR01271 569 LYLLDSPFTHLDVVTEKEIFESCLCKLM--SNKTRILVTSKL-EHL-KKADKILLLHEGVCYFYGTFSELQ 635 (1490)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHh--cCCeEEEEeCCh-HHH-HhCCEEEEEECCEEEEEcCHHHHH
Confidence 9999999999999999999984 67765 489999999997 455 569999999999999999998875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=312.80 Aligned_cols=197 Identities=22% Similarity=0.277 Sum_probs=152.5
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
++.++|+++|+++ ++|+.++++|+| ||||||||++|+|..+| .+|+|.++ +.+|||+|
T Consensus 671 ~~~~iL~~isl~i-----~~G~~~~IiG~n-----GsGKSTLL~~i~G~~~~---~~G~i~~~---------~~i~yv~Q 728 (1560)
T PTZ00243 671 EPKVLLRDVSVSV-----PRGKLTVVLGAT-----GSGKSTLLQSLLSQFEI---SEGRVWAE---------RSIAYVPQ 728 (1560)
T ss_pred CCceeEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEEC---------CeEEEEeC
Confidence 4567899999999 677788888776 89999999999999998 58999863 56999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~ 187 (622)
++.++ ..||+||+.|+..... ....+..+...+++.++.+ |+....+....+ ||||||||++|||||+
T Consensus 729 ~~~l~-~~Tv~enI~~~~~~~~-~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~--------LSGGQkqRvaLARAl~ 798 (1560)
T PTZ00243 729 QAWIM-NATVRGNILFFDEEDA-ARLADAVRVSQLEADLAQLGGGLETEIGEKGVN--------LSGGQKARVSLARAVY 798 (1560)
T ss_pred CCccC-CCcHHHHHHcCChhhH-HHHHHHHHHhhhHHHHHHhhccchHHhcCCCCC--------CCHHHHHHHHHHHHHh
Confidence 98876 4699999998532100 0001111112334455555 554444444333 9999999999999999
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
.+|+++||||||++||+.++.++++.+..... .|+|+|++||++ +.+ +.+|+|++|++|++++.|+.+++.
T Consensus 799 ~~p~illLDEP~saLD~~~~~~i~~~~~~~~~-~~~TvIlvTH~~-~~~-~~ad~ii~l~~G~i~~~G~~~~l~ 869 (1560)
T PTZ00243 799 ANRDVYLLDDPLSALDAHVGERVVEECFLGAL-AGKTRVLATHQV-HVV-PRADYVVALGDGRVEFSGSSADFM 869 (1560)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEeCCH-HHH-HhCCEEEEEECCEEEEecCHHHHH
Confidence 99999999999999999999999875433233 489999999997 444 689999999999999999998875
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-30 Score=294.46 Aligned_cols=219 Identities=22% Similarity=0.225 Sum_probs=159.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++|++++| |+.++|+++||++ .+|+.+.++|+| ||||||||++|+|+...+...+|+|.+.++
T Consensus 175 ~~~I~i~nls~~y--~~~~ll~~isl~i-----~~Ge~~gLvG~N-----GsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q 242 (718)
T PLN03073 175 IKDIHMENFSISV--GGRDLIVDASVTL-----AFGRHYGLVGRN-----GTGKTTFLRYMAMHAIDGIPKNCQILHVEQ 242 (718)
T ss_pred ceeEEEceEEEEe--CCCEEEECCEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHcCCCCCCCCCCCEEEEEec
Confidence 3568899999997 6667999999999 678888888887 799999999999974111124788876554
Q ss_pred ecCc------------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC-Cc---------------cccHHHH
Q psy2519 95 PVEG------------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL-DR---------------RVKAYQR 140 (622)
Q Consensus 95 ~~~~------------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~-~~---------------~~~~~~~ 140 (622)
++.. ..++.+++++|++.+... ++.++... ..... +. .......
T Consensus 243 ~~~g~~~t~~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~-~~~~~~~~-~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~ 320 (718)
T PLN03073 243 EVVGDDTTALQCVLNTDIERTQLLEEEAQLVAQQRELEFE-TETGKGKG-ANKDGVDKDAVSQRLEEIYKRLELIDAYTA 320 (718)
T ss_pred cCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc-cccccccc-ccccccchHHHHHHHHHHHHHHHhcCcchH
Confidence 3210 013346777775433221 22221110 00000 00 0011123
Q ss_pred HHHHHHHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 141 IALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 141 ~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
.+++.++++.+|+. +..++.+++ |||||||||+||++|+.+|++|||||||++||+.++..+.+.|+++
T Consensus 321 ~~r~~~~L~~lgl~~~~~~~~~~~--------LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 390 (718)
T PLN03073 321 EARAASILAGLSFTPEMQVKATKT--------FSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-- 390 (718)
T ss_pred HHHHHHHHHHCCCChHHHhCchhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--
Confidence 45677888888885 456777766 9999999999999999999999999999999999999999999875
Q ss_pred cCCCEEEEEeccCcHHHHhhccceeeecCCceE-EecChHHH
Q psy2519 220 QRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FIGSKDAA 260 (622)
Q Consensus 220 ~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~G~~~~~ 260 (622)
+.|||++|||. ..+.+.||++++|++|+++ +.|+.++.
T Consensus 391 --~~tviivsHd~-~~l~~~~d~i~~l~~g~i~~~~g~~~~~ 429 (718)
T PLN03073 391 --PKTFIVVSHAR-EFLNTVVTDILHLHGQKLVTYKGDYDTF 429 (718)
T ss_pred --CCEEEEEECCH-HHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 57999999995 6888899999999999996 67776654
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-29 Score=231.43 Aligned_cols=206 Identities=23% Similarity=0.292 Sum_probs=168.1
Q ss_pred CcccCCccccccc---cc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIV---GS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~---g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
.+.++||+|++.. |+ .++++++|+++ +.|+++++-|+ ||||||||||+|-|...| ++|+|++
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV-----~aGECvvL~G~-----SG~GKStllr~LYaNY~~---d~G~I~v 70 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSV-----NAGECVVLHGP-----SGSGKSTLLRSLYANYLP---DEGQILV 70 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEe-----cCccEEEeeCC-----CCCcHHHHHHHHHhccCC---CCceEEE
Confidence 4678999998753 32 58999999999 56666555444 599999999999999998 5999998
Q ss_pred CCE--ecC-----c----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 92 NGK--PVE-----G----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 92 ~G~--~~~-----~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
.-+ -++ + + .|+.||||.|--...|.....|-++-.+.-+ .++.+..+.++.+++.++++.+....
T Consensus 71 ~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~---gv~~~~a~~~a~~Ll~rLnlperLW~ 147 (235)
T COG4778 71 RHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR---GVPREVARAKAADLLTRLNLPERLWS 147 (235)
T ss_pred EeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHc---CCCHHHHHHHHHHHHHHcCCCHHHhc
Confidence 533 221 1 1 4678999999888889988888877765444 35666778889999999999776544
Q ss_pred -ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 160 -RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 160 -~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
.+.+ .||||||||.|||.++.|-+||+|||||+.||..++.-++++|++-+. .|..+|-+-|| .+.-+.
T Consensus 148 LaPaT--------FSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka-~GaAlvGIFHD-eevre~ 217 (235)
T COG4778 148 LAPAT--------FSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKA-RGAALVGIFHD-EEVREA 217 (235)
T ss_pred CCCcc--------cCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHh-cCceEEEeecc-HHHHHH
Confidence 4333 999999999999999999999999999999999999999999999876 79999999999 466777
Q ss_pred hccceeeecC
Q psy2519 239 MFDKIILLAD 248 (622)
Q Consensus 239 ~~D~v~~L~~ 248 (622)
.+||++-+..
T Consensus 218 vadR~~~~~~ 227 (235)
T COG4778 218 VADRLLDVSA 227 (235)
T ss_pred Hhhheeeccc
Confidence 8999988854
|
|
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.3e-28 Score=247.50 Aligned_cols=195 Identities=24% Similarity=0.259 Sum_probs=148.1
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh--------CCC--CCC--C------ceeeEEEECCE
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL--------SQV--IDD--C------IIDGDIRVNGK 94 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~--------g~~--~~~--~------~~~G~I~~~G~ 94 (622)
+.|+++++.+ +.+..+.+.+. ||||||||++.+. +.. .|. . ...--|.++..
T Consensus 9 ~nl~~v~~~i------p~g~~~~vtGv----SGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~ 78 (261)
T cd03271 9 NNLKNIDVDI------PLGVLTCVTGV----SGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQS 78 (261)
T ss_pred hcCCCceeec------cCCcEEEEECC----CCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCC
Confidence 4688999988 44444444343 6999999998552 110 010 0 01224778887
Q ss_pred ecCcc--------------ccc----------------cEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHH
Q psy2519 95 PVEGK--------------FRS----------------ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALI 144 (622)
Q Consensus 95 ~~~~~--------------~r~----------------~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v 144 (622)
|+... +|+ .+.|..++...+..|||.|++.|...+. ..+++
T Consensus 79 pi~~~~rs~~~ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---------~~~~~ 149 (261)
T cd03271 79 PIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---------KIARK 149 (261)
T ss_pred cCCCCCCCcHHHHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---------hHHHH
Confidence 77431 111 1446666666678999999999986542 12356
Q ss_pred HHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 145 NSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 145 ~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
.++++.+||.+ ..++.+.+ ||||||||++||++|+.+ |++++|||||+|||+..+..+.+.|+++++
T Consensus 150 ~~~L~~vgL~~l~l~~~~~~--------LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~- 220 (261)
T cd03271 150 LQTLCDVGLGYIKLGQPATT--------LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVD- 220 (261)
T ss_pred HHHHHHcCCchhhhcCcccc--------CCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHh-
Confidence 78999999987 46777666 999999999999999996 799999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeee------cCCceEEecCh
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSK 257 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 257 (622)
.|.|||+++|++ +.+ +.+|+++.| ++|++++.|++
T Consensus 221 ~g~tvIiitH~~-~~i-~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 221 KGNTVVVIEHNL-DVI-KCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred CCCEEEEEeCCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 699999999997 455 579999999 89999999974
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.5e-28 Score=240.78 Aligned_cols=192 Identities=21% Similarity=0.247 Sum_probs=135.6
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH-HHHhCCCCCCCceeeEEEEC-----------C--E
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI-RLFLSQVIDDCIIDGDIRVN-----------G--K 94 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl-~~l~g~~~~~~~~~G~I~~~-----------G--~ 94 (622)
..+.++++++|+++ .+|+.+.++|+| |||||||+ ..+.. +|++.+. | .
T Consensus 5 ~~~~~~l~~vsl~i-----~~Ge~~~l~G~s-----GsGKSTL~~~~i~~--------~g~~~~~~~~~~~~~~~~~~~~ 66 (226)
T cd03270 5 GAREHNLKNVDVDI-----PRNKLVVITGVS-----GSGKSSLAFDTIYA--------EGQRRYVESLSAYARQFLGQMD 66 (226)
T ss_pred cchhhccccceeec-----CCCcEEEEEcCC-----CCCHHHHHHHHHHH--------HHHHHHhhcccchhhhhhcccC
Confidence 34578999999999 678888888776 89999995 44431 2222110 0 0
Q ss_pred ecCc-cc-cccEEEEecCC--CCCCCCCHH---HHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCC
Q psy2519 95 PVEG-KF-RSACGFMYQHD--LFSPSLTVY---EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSI 166 (622)
Q Consensus 95 ~~~~-~~-r~~igyV~Q~~--~l~~~lTV~---E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~ 166 (622)
.... .. ....++..|++ .+.|..+|. |...+...+. ......++ .+.++.++|.+ ..++.+.+
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~--- 137 (226)
T cd03270 67 KPDVDSIEGLSPAIAIDQKTTSRNPRSTVGTVTEIYDYLRLLF-----ARVGIRER-LGFLVDVGLGYLTLSRSAPT--- 137 (226)
T ss_pred ccccccccCCCceEEecCCCCCCCCCccHHHHHHHHHHHHHHh-----hhhhHHHH-HHHHHHCCCCcccccCccCc---
Confidence 0000 11 12334444543 334555654 3222222111 11112223 46899999976 47777666
Q ss_pred CCccccChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
||||||||++||++|+.+| ++++|||||+|||+.++.++.+.|+++++ .|.|+|++||++ +++ +.||+++
T Consensus 138 -----LSgG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~-~g~tii~itH~~-~~~-~~~d~i~ 209 (226)
T cd03270 138 -----LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRD-LGNTVLVVEHDE-DTI-RAADHVI 209 (226)
T ss_pred -----CCHHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEEeCH-HHH-HhCCEEE
Confidence 9999999999999999998 59999999999999999999999999986 699999999997 455 6999999
Q ss_pred ee------cCCceEEec
Q psy2519 245 LL------ADSRTAFIG 255 (622)
Q Consensus 245 ~L------~~G~iv~~G 255 (622)
+| ++|+|+++|
T Consensus 210 ~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 210 DIGPGAGVHGGEIVAQG 226 (226)
T ss_pred EeCCCccccCCEEEecC
Confidence 99 999999876
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=257.90 Aligned_cols=211 Identities=25% Similarity=0.369 Sum_probs=173.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.+++|++.. + .++++||++ .+||.+.+-|- -|||+|-|+++|.|..++ .+|+|.+||+++.
T Consensus 264 l~v~~l~~~---~---~~~dvSf~v-----r~GEIlGiaGL-----vGaGRTEl~~~lfG~~~~---~~G~i~l~G~~v~ 324 (500)
T COG1129 264 LEVRNLSGG---G---KVRDVSFTV-----RAGEILGIAGL-----VGAGRTELARALFGARPA---SSGEILLDGKPVR 324 (500)
T ss_pred EEEecCCCC---C---ceeCceeEE-----eCCcEEEEecc-----ccCCHHHHHHHHhCCCcC---CCceEEECCEEcc
Confidence 346666653 1 467899998 45555444443 389999999999998776 4899999999885
Q ss_pred c-----cccccEEEEecC---CCCCCCCCHHHHHHHHHHcCCC-c-cccHHHHHHHHHHHHHHhCCC-cccCCccCCcCC
Q psy2519 98 G-----KFRSACGFMYQH---DLFSPSLTVYEHLYFMALLKLD-R-RVKAYQRIALINSLLIELGLM-NSQHTRIGSSSI 166 (622)
Q Consensus 98 ~-----~~r~~igyV~Q~---~~l~~~lTV~E~l~f~~~l~~~-~-~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~ 166 (622)
. .++..++||+.| +.+++.++|.||+.++...+.. . -.+....++.+++..+.+++. ...+..+++
T Consensus 325 ~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~--- 401 (500)
T COG1129 325 IRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT--- 401 (500)
T ss_pred CCCHHHHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhc---
Confidence 4 367899999986 4699999999999998322211 1 245555667889999999994 445677777
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||.||||.|||.|..+|++|||||||.|.|..+..+|.++|+++++ +|++||++|-++ +|+..+||||++|
T Consensus 402 -----LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~-~G~ail~iSSEl-pEll~~~DRIlVm 474 (500)
T COG1129 402 -----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAA-EGKAILMISSEL-PELLGLSDRILVM 474 (500)
T ss_pred -----CCchhhhhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHH-CCCEEEEEeCCh-HHHHhhCCEEEEE
Confidence 999999999999999999999999999999999999999999999998 799999999995 7999999999999
Q ss_pred cCCceEEecCh
Q psy2519 247 ADSRTAFIGSK 257 (622)
Q Consensus 247 ~~G~iv~~G~~ 257 (622)
++|+++..=+.
T Consensus 475 ~~Gri~~e~~~ 485 (500)
T COG1129 475 REGRIVGELDR 485 (500)
T ss_pred ECCEEEEEecc
Confidence 99999875443
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-27 Score=282.51 Aligned_cols=215 Identities=20% Similarity=0.223 Sum_probs=181.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++|++..|..+...||+++|+++ ++++++.|+|.- |||||||+++|-.+.+| .+|+|.+||.
T Consensus 1136 ~G~I~f~~~~~RYrp~lp~VLk~is~~I-----~p~eKVGIVGRT-----GaGKSSL~~aLFRl~e~---~~G~I~IDgv 1202 (1381)
T KOG0054|consen 1136 KGEIEFEDLSLRYRPNLPLVLKGISFTI-----KPGEKVGIVGRT-----GAGKSSLILALFRLVEP---AEGEILIDGV 1202 (1381)
T ss_pred CCeEEEEEeEEEeCCCCcchhcCceEEE-----cCCceEEEeCCC-----CCCHHHHHHHHHHhcCc---cCCeEEEcCe
Confidence 4678899999999888889999999999 788999999887 89999999999999998 4899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
|+.. ++|++++.+||||.+|.. |||+||-=..+. ++ +.+-++|++.+|. ...|..+.+
T Consensus 1203 dI~~igL~dLRsrlsIIPQdPvLFsG-TvR~NLDPf~e~------sD----~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~e 1271 (1381)
T KOG0054|consen 1203 DISKIGLHDLRSRLSIIPQDPVLFSG-TVRFNLDPFDEY------SD----DEIWEALERCQLKDVVSSLPGGLDSEVSE 1271 (1381)
T ss_pred ecccccHHHHHhcCeeeCCCCceecC-ccccccCccccc------CH----HHHHHHHHHhChHHHHhhCCcCCCceecC
Confidence 9986 689999999999999987 999997432211 11 2233444444443 345666554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....+|-||||-+++||||+++.+||+|||.|++.|+.+-..|.+.||+--+ ++|||.+-|... .+. =+|||
T Consensus 1272 ----gG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~--dcTVltIAHRl~-TVm-d~DrV 1343 (1381)
T KOG0054|consen 1272 ----GGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFK--DCTVLTIAHRLN-TVM-DSDRV 1343 (1381)
T ss_pred ----CCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhc--CCeEEEEeeccc-hhh-hcCeE
Confidence 2345999999999999999999999999999999999999999999999754 799999999974 554 48999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
+||++|+++++|+|.+++
T Consensus 1344 lVld~G~v~EfdsP~~Ll 1361 (1381)
T KOG0054|consen 1344 LVLDAGRVVEFDSPAELL 1361 (1381)
T ss_pred EEeeCCeEeecCChHHHH
Confidence 999999999999999886
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-27 Score=278.06 Aligned_cols=208 Identities=23% Similarity=0.314 Sum_probs=169.5
Q ss_pred ecCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
.++.++++|.+|+... +..+.|+|+|+.+ ++|+.++++|+- |||||+||.+|.|-.+. .+|+|.++
T Consensus 515 ~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i-----~~G~lvaVvG~v-----GsGKSSLL~AiLGEm~~---~sG~v~v~ 581 (1381)
T KOG0054|consen 515 GENAIEIKNGSFSWDSESPEPTLKDINFEI-----KKGQLVAVVGPV-----GSGKSSLLSAILGEMPK---LSGSVAVN 581 (1381)
T ss_pred CCceEEEeeeeEecCCCCCcccccceeEEe-----cCCCEEEEECCC-----CCCHHHHHHHHhcCccc---ccceEEEc
Confidence 4466788999999744 2345899999999 566666666554 89999999999999987 69999999
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCCcC
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGSSS 165 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~~~ 165 (622)
|. ++||+|++-++.. ||+|||.|+.... +++-+++++...|.+.. .+-||+
T Consensus 582 gs---------iaYv~Q~pWI~ng-TvreNILFG~~~d----------~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGE-- 639 (1381)
T KOG0054|consen 582 GS---------VAYVPQQPWIQNG-TVRENILFGSPYD----------EERYDKVIKACALKKDLEILPFGDLTEIGE-- 639 (1381)
T ss_pred Ce---------EEEeccccHhhCC-cHHHhhhcCcccc----------HHHHHHHHHHccCHhHHhhcCCCCcceecC--
Confidence 86 8999999987765 9999999985431 22345566666664432 345665
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.-.||||||||+++|||+=.|.+++|||.|.|++|+....++.+..-+-.- +++|+|++||+. +..+.+|.|++
T Consensus 640 --rGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L-~~KT~ILVTHql--~~L~~ad~Iiv 714 (1381)
T KOG0054|consen 640 --RGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLL-RGKTVILVTHQL--QFLPHADQIIV 714 (1381)
T ss_pred --CccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhh-cCCEEEEEeCch--hhhhhCCEEEE
Confidence 3456999999999999999999999999999999999999998865554443 589999999985 66789999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|+|...|+.+|+.
T Consensus 715 l~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 715 LKDGKIVESGTYEELL 730 (1381)
T ss_pred ecCCeEecccCHHHHH
Confidence 9999999999999987
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.5e-27 Score=216.83 Aligned_cols=133 Identities=33% Similarity=0.474 Sum_probs=115.5
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQH 110 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~ 110 (622)
|+++|+++ ++|+.++++|+| |||||||+++|+|..+| .+|+|.++|+++.. ..++.++|++|+
T Consensus 1 L~~v~~~i-----~~g~~~~i~G~n-----GsGKStLl~~l~g~~~~---~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~ 67 (137)
T PF00005_consen 1 LKNVSLEI-----KPGEIVAIVGPN-----GSGKSTLLKALAGLLPP---DSGSILINGKDISDIDIEELRRRIGYVPQD 67 (137)
T ss_dssp EEEEEEEE-----ETTSEEEEEEST-----TSSHHHHHHHHTTSSHE---SEEEEEETTEEGTTSHHHHHHHTEEEEESS
T ss_pred CCceEEEE-----cCCCEEEEEccC-----CCccccceeeecccccc---cccccccccccccccccccccccccccccc
Confidence 67899999 678888888887 89999999999999998 59999999999975 368899999999
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
+.+++.+||.|| ...++++++++.+++.+..++.++.. .+.||||||||++||+||+.+|
T Consensus 68 ~~~~~~~tv~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~----~~~LS~Ge~~rl~la~al~~~~ 127 (137)
T PF00005_consen 68 PQLFPGLTVREN----------------ESDERIEEVLKKLGLEDLLDRKIGQR----ASSLSGGEKQRLALARALLKNP 127 (137)
T ss_dssp HCHHTTSBHHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSC----GGGSCHHHHHHHHHHHHHHTTS
T ss_pred cccccccccccc----------------cccccccccccccccccccccccccc----cchhhHHHHHHHHHHHHHHcCC
Confidence 999999999999 12345778999999988777777441 1349999999999999999999
Q ss_pred CeEEEeCCCC
Q psy2519 191 ALLLCDEPTT 200 (622)
Q Consensus 191 ~lLlLDEPTs 200 (622)
++++|||||+
T Consensus 128 ~llllDEPt~ 137 (137)
T PF00005_consen 128 KLLLLDEPTN 137 (137)
T ss_dssp SEEEEESTTT
T ss_pred CEEEEeCCCC
Confidence 9999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-26 Score=254.48 Aligned_cols=205 Identities=28% Similarity=0.311 Sum_probs=169.2
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..+..++++|++++|. +++.+++++|+.+ .+|.+++++|+| |+|||||||+|+|...| .+|+|.+.
T Consensus 317 ~g~~vl~~~~~~~~y~-~~~~l~~~~s~~i-----~~g~riaiiG~N-----G~GKSTLlk~l~g~~~~---~~G~v~~g 382 (530)
T COG0488 317 LGKLVLEFENVSKGYD-GGRLLLKDLSFRI-----DRGDRIAIVGPN-----GAGKSTLLKLLAGELGP---LSGTVKVG 382 (530)
T ss_pred CCCeeEEEeccccccC-CCceeecCceEEe-----cCCCEEEEECCC-----CCCHHHHHHHHhhhccc---CCceEEeC
Confidence 4456678999999973 3368899999999 688899999888 79999999999999998 48999874
Q ss_pred CEecCccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCcc
Q psy2519 93 GKPVEGKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKV 170 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~ 170 (622)
-. -.+||..|+. .+.+..|+.|++.-...- . ....+...|..+++. +...++++.
T Consensus 383 ~~-------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~--------~-~e~~~r~~L~~f~F~~~~~~~~v~~------- 439 (530)
T COG0488 383 ET-------VKIGYFDQHRDELDPDKTVLEELSEGFPD--------G-DEQEVRAYLGRFGFTGEDQEKPVGV------- 439 (530)
T ss_pred Cc-------eEEEEEEehhhhcCccCcHHHHHHhhCcc--------c-cHHHHHHHHHHcCCChHHHhCchhh-------
Confidence 32 3599999985 555888999988654211 0 134577899999995 455778777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
||||||.|+.+|+.++.+|.+|||||||+.||..+...+.+.|.+. .-|||+|||| ...+.+++++++.+.+ +
T Consensus 440 -LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f----~Gtvl~VSHD-r~Fl~~va~~i~~~~~-~ 512 (530)
T COG0488 440 -LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF----EGTVLLVSHD-RYFLDRVATRIWLVED-K 512 (530)
T ss_pred -cCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC----CCeEEEEeCC-HHHHHhhcceEEEEcC-c
Confidence 9999999999999999999999999999999999999999999886 3499999999 5899999999999998 6
Q ss_pred eEEe-cChHHHH
Q psy2519 251 TAFI-GSKDAAL 261 (622)
Q Consensus 251 iv~~-G~~~~~~ 261 (622)
+... |..++..
T Consensus 513 ~~~~~g~y~~y~ 524 (530)
T COG0488 513 VEEFEGGYEDYL 524 (530)
T ss_pred eeEcCCCHHHHH
Confidence 5544 7766543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-27 Score=229.62 Aligned_cols=166 Identities=13% Similarity=0.188 Sum_probs=127.2
Q ss_pred EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC------CceeeEEEECCEecCc-cccccEEEEe
Q psy2519 36 AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD------CIIDGDIRVNGKPVEG-KFRSACGFMY 108 (622)
Q Consensus 36 ~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~------~~~~G~I~~~G~~~~~-~~r~~igyV~ 108 (622)
+++++++ .+| .++++|+| |||||||+++|+|+..+. ....|++.++|++... ..++.+||||
T Consensus 14 ~~~~l~~-----~~g-~~~i~G~n-----GsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vf 82 (197)
T cd03278 14 DKTTIPF-----PPG-LTAIVGPN-----GSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTF 82 (197)
T ss_pred CCeeeec-----CCC-cEEEECCC-----CCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEE
Confidence 3456665 344 77777776 899999999999997652 1124578888887643 3457899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh-
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL- 187 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~- 187 (622)
|++..+ |. . .. .++++++++. .+..++.+.+ ||||||||++||++|+
T Consensus 83 q~~~~~----------~~----~---~~----~~~~~~~l~~---~~~~~~~~~~--------LS~G~kqrl~la~~l~~ 130 (197)
T cd03278 83 DNSDGR----------YS----I---IS----QGDVSEIIEA---PGKKVQRLSL--------LSGGEKALTALALLFAI 130 (197)
T ss_pred EcCCCc----------ee----E---Ee----hhhHHHHHhC---CCccccchhh--------cCHHHHHHHHHHHHHHH
Confidence 988665 11 0 01 2355667766 4556666555 9999999999999997
Q ss_pred ---hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 188 ---TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 188 ---~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.+|++++|||||+|||+..+..+.+.|+++++ +.|||++||++ +. .+.+|+++.+..
T Consensus 131 ~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~--~~tiIiitH~~-~~-~~~~d~v~~~~~ 190 (197)
T cd03278 131 FRVRPSPFCVLDEVDAALDDANVERFARLLKEFSK--ETQFIVITHRK-GT-MEAADRLYGVTM 190 (197)
T ss_pred hccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH-HH-HhhcceEEEEEe
Confidence 46699999999999999999999999999964 68999999996 44 478999999963
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.5e-27 Score=218.92 Aligned_cols=206 Identities=22% Similarity=0.291 Sum_probs=170.1
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++||+.+-. |.-.+..+ ..|+..-++||| ||||||||-.++|+++. +|+|.++|.++.
T Consensus 4 ~qln~v~~~tR------L~plS~qv-----~aGe~~HliGPN-----GaGKSTLLA~lAGm~~~----sGsi~~~G~~l~ 63 (248)
T COG4138 4 MQLNDVAESTR------LGPLSGEV-----RAGEILHLVGPN-----GAGKSTLLARMAGMTSG----SGSIQFAGQPLE 63 (248)
T ss_pred eeecccccccc------cccccccc-----ccceEEEEECCC-----CccHHHHHHHHhCCCCC----CceEEECCcchh
Confidence 45566666421 33344444 467777778777 79999999999999986 899999999986
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. ++.|+-+|+.|+..-...|-|...+... . +.+++...++++.+.++|.+...+.+.. ||
T Consensus 64 ~~~~~eLArhRAYLsQqq~p~f~mpV~~YL~L~----q----P~~~~a~~i~~i~~~L~l~DKL~Rs~~q--------LS 127 (248)
T COG4138 64 AWSATELARHRAYLSQQQTPPFAMPVWHYLTLH----Q----PDKTRTELLNDVAGALALDDKLGRSTNQ--------LS 127 (248)
T ss_pred HHhHhHHHHHHHHHhhccCCcchhhhhhhhhhc----C----chHHHHHHHHHHHhhhcccchhhhhhhh--------cC
Confidence 5 5677789999987666677888877653 2 3355666788999999999998888777 99
Q ss_pred hHHHHHHHHHHHHhh-----CC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 174 GGERKRLSFATELLT-----DP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 174 gGqrqRvsIA~aL~~-----~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||-|||-+|-..+. || ++|++|||.++||......+-.+|.++++ .|.+||++.||. +...+.+|++++|
T Consensus 128 GGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~-~G~~vims~HDL-NhTLrhA~~~wLL 205 (248)
T COG4138 128 GGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQ-QGLAIVMSSHDL-NHTLRHAHRAWLL 205 (248)
T ss_pred cccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHh-CCcEEEEeccch-hhHHHHHHHHHHH
Confidence 999999999977653 34 58999999999999999999999999998 799999999997 5778899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
+.|++...|..+|++
T Consensus 206 ~rG~l~~~G~~~eVl 220 (248)
T COG4138 206 KRGKLLASGRREEVL 220 (248)
T ss_pred hcCeEEeecchhhhc
Confidence 999999999999876
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-25 Score=223.84 Aligned_cols=186 Identities=17% Similarity=0.272 Sum_probs=132.4
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC----------------CCCCCceee------
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ----------------VIDDCIIDG------ 87 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~----------------~~~~~~~~G------ 87 (622)
++..++++++ ++.++++|+| ||||||||++|++. ..++ +|
T Consensus 13 ~~~~~~~~~~----------~~~~~i~GpN-----GsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~---~~~~~~~~ 74 (243)
T cd03272 13 KDQTVIEPFS----------PKHNVVVGRN-----GSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEG---SGPSVMSA 74 (243)
T ss_pred ccCcccccCC----------CCcEEEECCC-----CCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCC---CCCCCceE
Confidence 4555555543 5677888887 79999999999833 3332 34
Q ss_pred --EEEECCEe----cCc---cccccEEEEecCCCCCC-CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 88 --DIRVNGKP----VEG---KFRSACGFMYQHDLFSP-SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 88 --~I~~~G~~----~~~---~~r~~igyV~Q~~~l~~-~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
+|.+++.+ +.. .+++.+|+++|+..+++ ..|..|...+............. .....++.+.+++.+..
T Consensus 75 ~v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~~~t~~ei~~~l~~~gl~~~~~~~--~~~qg~i~~l~~l~~~~ 152 (243)
T cd03272 75 YVEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKKNVTKNDVMNLLESAGFSRSNPYY--IVPQGKINSLTNMKQDE 152 (243)
T ss_pred EEEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCeEcCHHHHHHHHHHcCCCCCCCcE--EEEcCchHHhhhccccc
Confidence 56666532 111 36778999999888877 46777766665544332110000 00011233445565556
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
+..+.+ ||||||||++||++|+. +|+++++||||+|||+.++..+.+.|+++++ ++|+|+++|++
T Consensus 153 ~~~~~~--------lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~--~~~ii~~~h~~- 221 (243)
T cd03272 153 QQEMQQ--------LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD--GAQFITTTFRP- 221 (243)
T ss_pred cccccc--------cCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-
Confidence 666555 99999999999999974 5899999999999999999999999999864 78899899984
Q ss_pred HHHHhhccceeeec
Q psy2519 234 SELIDMFDKIILLA 247 (622)
Q Consensus 234 ~~i~~~~D~v~~L~ 247 (622)
++.+.||++++|.
T Consensus 222 -~~~~~~d~i~~l~ 234 (243)
T cd03272 222 -ELLEVADKFYGVK 234 (243)
T ss_pred -HHHhhCCEEEEEE
Confidence 6789999999995
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.1e-27 Score=232.42 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=140.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|.. + +++..++++++++ .+.++|+| |||||||+++|.- ++|.+.
T Consensus 5 ~l~l~nfk-~--~~~~~~l~~~~~~----------i~~ivGpN-----GaGKSTll~~i~~-------------~~G~~~ 53 (212)
T cd03274 5 KLVLENFK-S--YAGEQVIGPFHKS----------FSAIVGPN-----GSGKSNVIDSMLF-------------VFGFRA 53 (212)
T ss_pred EEEEECcc-c--CCCCeeeccCCCC----------eEEEECCC-----CCCHHHHHHHHHH-------------HhccCH
Confidence 45566665 3 4777788877653 45677777 8999999999972 233332
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-----ccccHHHHHH--HHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-----RRVKAYQRIA--LINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-----~~~~~~~~~~--~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
....++++++++|+..++|.+|+.|.+.+....... .....++... ..+++++.++|.+..++.++.
T Consensus 54 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~~~~~~L~~~~~~~~~~------ 127 (212)
T cd03274 54 SKMRQKKLSDLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEVEQIAQMPKKSWKNISN------ 127 (212)
T ss_pred HHhhhhhHHHHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcEEEeeccccccccchhh------
Confidence 222235799999999999999999988776543210 0011111010 125667788888888888766
Q ss_pred cccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||+|||||++||++++. +|+++++||||+|||+.++..+.+.++++++ +.|+|++||++ ++.+.|||+++
T Consensus 128 --lS~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~--~~~~iivs~~~--~~~~~~d~v~~ 201 (212)
T cd03274 128 --LSGGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTK--NAQFIVISLRN--NMFELADRLVG 201 (212)
T ss_pred --cCHHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC--CCEEEEEECcH--HHHHhCCEEEE
Confidence 99999999999999974 4799999999999999999999999999864 57889999985 78899999999
Q ss_pred ecC
Q psy2519 246 LAD 248 (622)
Q Consensus 246 L~~ 248 (622)
|..
T Consensus 202 ~~~ 204 (212)
T cd03274 202 IYK 204 (212)
T ss_pred EEe
Confidence 964
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=229.44 Aligned_cols=178 Identities=12% Similarity=0.106 Sum_probs=136.8
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-ecCc------cccccEEEEecCC---------CC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK-PVEG------KFRSACGFMYQHD---------LF 113 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~-~~~~------~~r~~igyV~Q~~---------~l 113 (622)
++..+|+|+| |||||||+++|++++.+. ..|++...|. ++-. ..+..+++++|++ .+
T Consensus 25 ~~~~~IvG~N-----GsGKStll~Ai~~ll~~~--~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~ 97 (251)
T cd03273 25 PQFNAITGLN-----GSGKSNILDAICFVLGIT--NLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFEN 97 (251)
T ss_pred CCeEEEECCC-----CCCHHHHHHHHHHHhccc--ccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccC
Confidence 5577788777 899999999999998763 2468887776 3211 1245899999984 45
Q ss_pred CCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--------------------cccCCccCCcCCCCccccC
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--------------------NSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--------------------~~~~~~v~~~~~~~~~gLS 173 (622)
.|.+||.+++......+...+ .+....+++.++++.+|+. +..++.+.+ ||
T Consensus 98 ~~~ltV~r~I~~~~~~~~~in-~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~--------lS 168 (251)
T cd03273 98 YPEITVTRQIVLGGTNKYLIN-GHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTE--------LS 168 (251)
T ss_pred CceEEEEEEEEcCCceEEEEC-CEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccc--------cC
Confidence 678999999876432211000 1122346788999999996 233455444 99
Q ss_pred hHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 174 GGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 174 gGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||++||++|+ .+|+++++||||+|||+..+..+.+.|++++ .|.|+|++||++ ++.+.||+++-+.
T Consensus 169 ~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~--~g~~ii~iSH~~--~~~~~~d~v~~~~ 242 (251)
T cd03273 169 GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHF--KGSQFIVVSLKE--GMFNNANVLFRTR 242 (251)
T ss_pred HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHc--CCCEEEEEECCH--HHHHhCCEEEEEE
Confidence 99999999999998 4789999999999999999999999999995 488999999994 7778899998875
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.3e-24 Score=226.45 Aligned_cols=219 Identities=23% Similarity=0.246 Sum_probs=181.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+..-..| .+.++++||++ .+|+.+.|-|- +|-|-+.|+.+|+|+.++ .+|+|.++|+++
T Consensus 257 vL~V~~L~v~~~~~-~~~v~~vs~~V-----r~GEIvGIAGV-----~GNGQ~eL~eaisGlr~~---~~G~I~l~G~~v 322 (501)
T COG3845 257 VLEVEDLSVKDRRG-VTAVKDVSFEV-----RAGEIVGIAGV-----AGNGQSELVEAISGLRKP---ASGRILLNGKDV 322 (501)
T ss_pred EEEEeeeEeecCCC-CceeeeeeeEE-----ecCcEEEEEec-----CCCCHHHHHHHHhCCCcc---CCceEEECCEec
Confidence 35788999875333 56789999999 56666666554 489999999999999987 369999999997
Q ss_pred -Cc-----cccccEEEEecCC---CCCCCCCHHHHHHHHHHcC----CCccccHHHHHHHHHHHHHHhCCCc-ccCCccC
Q psy2519 97 -EG-----KFRSACGFMYQHD---LFSPSLTVYEHLYFMALLK----LDRRVKAYQRIALINSLLIELGLMN-SQHTRIG 162 (622)
Q Consensus 97 -~~-----~~r~~igyV~Q~~---~l~~~lTV~E~l~f~~~l~----~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~ 162 (622)
.+ ..+..+||||+|. .+.+.+|+.||+.+...-+ ...-....+.++.+.+++++++... -.+.+++
T Consensus 323 ~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~ 402 (501)
T COG3845 323 LGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR 402 (501)
T ss_pred cccCCHHHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchh
Confidence 22 2567899999975 5899999999998865432 1112455667788899999999863 2344444
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ||||++||+-+||+|..+|++|++.+||.|||..+...|.+.|.+.++ .|+.|++++-+. +|+.++|||
T Consensus 403 ~--------LSGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~-~G~AVLLiS~dL-DEil~lsDr 472 (501)
T COG3845 403 S--------LSGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRD-AGKAVLLISEDL-DEILELSDR 472 (501)
T ss_pred h--------cCCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHh-cCCEEEEEehhH-HHHHHhhhe
Confidence 4 999999999999999999999999999999999999999999999998 799999999996 799999999
Q ss_pred eeeecCCceEEecChHH
Q psy2519 243 IILLADSRTAFIGSKDA 259 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~ 259 (622)
|.+|.+|+++...++++
T Consensus 473 IaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 473 IAVIYEGRIVGIVPPEE 489 (501)
T ss_pred eeeeeCCceeccccccc
Confidence 99999999998887765
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.91 E-value=7.3e-25 Score=224.92 Aligned_cols=206 Identities=21% Similarity=0.245 Sum_probs=165.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.+|++||.|.|.... --+..||+++ ++|+-+.++|+| |||||||+++|+|+.+| .+|+|++||+|
T Consensus 321 ~~lelrnvrfay~~~~-FhvgPiNl~i-----krGelvFliG~N-----GsGKST~~~LLtGL~~P---qsG~I~ldg~p 386 (546)
T COG4615 321 KTLELRNVRFAYQDNA-FHVGPINLTI-----KRGELVFLIGGN-----GSGKSTLAMLLTGLYQP---QSGEILLDGKP 386 (546)
T ss_pred cceeeeeeeeccCccc-ceecceeeEE-----ecCcEEEEECCC-----CCcHHHHHHHHhcccCC---CCCceeECCcc
Confidence 5689999999985443 3467889999 677788888887 79999999999999999 59999999999
Q ss_pred cCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 96 VEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 96 ~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+++ ++|+-++-||-|..+|+.+=-.|+ ....+.++.+++++.|.+...-+-|+-.+-.
T Consensus 387 V~~e~ledYR~LfSavFsDyhLF~~ll~~e~---------------~as~q~i~~~LqrLel~~ktsl~d~~fs~~k--- 448 (546)
T COG4615 387 VSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG---------------KASPQLIEKWLQRLELAHKTSLNDGRFSNLK--- 448 (546)
T ss_pred CCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc---------------CCChHHHHHHHHHHHHhhhhcccCCcccccc---
Confidence 976 478888888888888775321111 0123456788888888664322222211233
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
||.|||||+++-.||+-+-+|+++||=-+..||.=++...+.+--+-++.|+||+.+|||- .-+..+||++.+++|++
T Consensus 449 LStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd--~YF~~ADrll~~~~G~~ 526 (546)
T COG4615 449 LSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD--HYFIHADRLLEMRNGQL 526 (546)
T ss_pred cccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc--hhhhhHHHHHHHhcCce
Confidence 9999999999999999999999999999999999999999888777777899999999994 56889999999999999
Q ss_pred EEec
Q psy2519 252 AFIG 255 (622)
Q Consensus 252 v~~G 255 (622)
++.-
T Consensus 527 ~e~t 530 (546)
T COG4615 527 SELT 530 (546)
T ss_pred eecc
Confidence 8754
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.4e-24 Score=210.80 Aligned_cols=159 Identities=23% Similarity=0.306 Sum_probs=119.7
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHh----CCCCCCCceeeEEEECCEecCc-cccccEEEEecCC-----CCCCCCCHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFL----SQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD-----LFSPSLTVY 120 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~----g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~-----~l~~~lTV~ 120 (622)
+.++++|+| ||||||||++|. |...++ +|.+..+.+.+.. ..+..+++++|++ .....+|+.
T Consensus 23 g~~~i~G~N-----GsGKTTLl~ai~~~l~G~~~~~---~~~~~~~~~~i~~~~~~~~v~~~f~~~~~~~~~v~r~~~~~ 94 (204)
T cd03240 23 PLTLIVGQN-----GAGKTTIIEALKYALTGELPPN---SKGGAHDPKLIREGEVRAQVKLAFENANGKKYTITRSLAIL 94 (204)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHHcCCCCcc---cccccchHHHHhCCCCcEEEEEEEEeCCCCEEEEEEEhhHh
Confidence 467777776 899999999994 888773 5655422222222 3567899999987 345556888
Q ss_pred HHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHH------HHHHHHHhhCCCeEE
Q psy2519 121 EHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR------LSFATELLTDPALLL 194 (622)
Q Consensus 121 E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqR------vsIA~aL~~~P~lLl 194 (622)
||+.+.. .. .+++.+ ++.+++ ||+||||| ++||++++.+|++++
T Consensus 95 ~~~~~~~---------~~----~~~~~~---------~~~~~~--------LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 95 ENVIFCH---------QG----ESNWPL---------LDMRGR--------CSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred hceeeec---------hH----HHHHHH---------hcCccc--------cCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 8876531 11 122233 445444 99999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec-CC
Q psy2519 195 CDEPTTGLDSFSAS-KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA-DS 249 (622)
Q Consensus 195 LDEPTsgLD~~~~~-~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~-~G 249 (622)
+||||++||+..+. .+.+.|++++++.|.|||++||++ + ..+.||+++.|. +|
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~-~-~~~~~d~i~~l~~~~ 199 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDE-E-LVDAADHIYRVEKDG 199 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecH-H-HHhhCCEEEEEeeCC
Confidence 99999999999999 999999999874489999999996 3 456899999995 44
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.8e-23 Score=250.93 Aligned_cols=137 Identities=28% Similarity=0.291 Sum_probs=114.0
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHh---h
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELL---T 188 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~---~ 188 (622)
.+...||.|+|.+.............+..+++ ++++.+||.+. .++.+.+ ||||||||++||++|+ .
T Consensus 759 ~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~t--------LSGGE~QRV~LAraL~~~~~ 829 (1809)
T PRK00635 759 RYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSS--------LSGGEIQRLKLAYELLAPSK 829 (1809)
T ss_pred ccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCcccc--------CCHHHHHHHHHHHHHhhcCC
Confidence 55678999999887653211111223445556 58899999876 6888766 9999999999999998 6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec------CCceEEecChHHHH
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 261 (622)
+|+++||||||+|||+.++.++++.|+++++ .|.|||+++|++ +.+ +.+|++++|. +|++++.|+++++.
T Consensus 830 ~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~-~G~TVIiIsHdl-~~i-~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~ 905 (1809)
T PRK00635 830 KPTLYVLDEPTTGLHTHDIKALIYVLQSLTH-QGHTVVIIEHNM-HVV-KVADYVLELGPEGGNLGGYLLASCSPEELI 905 (1809)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEEccCCCCCCCEEEEeCCHHHHH
Confidence 9999999999999999999999999999987 699999999997 566 8999999996 78999999999875
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.90 E-value=8e-24 Score=210.50 Aligned_cols=193 Identities=13% Similarity=0.060 Sum_probs=130.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC-E-
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG-K- 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G-~- 94 (622)
.++++|+. +| .+. ..+++.. ..+++.++++|+| ||||||||++|++.+... ..+....+. .
T Consensus 5 ~i~l~nf~-~y-~~~----~~i~~~~----~~~~~~~~i~G~N-----GsGKSTll~~i~~~l~g~--~~~~~~~~~~~~ 67 (213)
T cd03279 5 KLELKNFG-PF-REE----QVIDFTG----LDNNGLFLICGPT-----GAGKSTILDAITYALYGK--TPRYGRQENLRS 67 (213)
T ss_pred EEEEECCc-Cc-CCc----eEEeCCC----CCccCEEEEECCC-----CCCHHHHHHHheeeEecC--ccccccchhHHH
Confidence 56677777 54 232 2333332 1235677777776 899999999999654211 133333221 1
Q ss_pred ecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 95 PVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 95 ~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.+.. ..+..+++++|++.... ++.+.. ..+.++..+.+ .++..++.+..++.+.+ ||
T Consensus 68 ~~~~~~~~~~v~~~f~~~~~~~--~~~r~~----------gl~~~~~~~~~--~l~~g~l~~~l~~~~~~--------lS 125 (213)
T cd03279 68 VFAPGEDTAEVSFTFQLGGKKY--RVERSR----------GLDYDQFTRIV--LLPQGEFDRFLARPVST--------LS 125 (213)
T ss_pred HhcCCCccEEEEEEEEECCeEE--EEEEec----------CCCHHHHHHhh--hhhhcchHHHhcCCccc--------cC
Confidence 1111 34667999999763211 222211 11222221111 23444455666777665 99
Q ss_pred hHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 174 GGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 174 gGqrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
||||||+++|++|+. +|++++|||||+|||+.++..+.+.++++++ +|.|+|++||++ +.+...+|++
T Consensus 126 ~G~~~r~~la~al~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~-~~~tii~itH~~-~~~~~~~~~i 203 (213)
T cd03279 126 GGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRT-ENRMVGVISHVE-ELKERIPQRL 203 (213)
T ss_pred HHHHHHHHHHHHHHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEECch-HHHHhhCcEE
Confidence 999999999999985 5789999999999999999999999999986 589999999996 6788899999
Q ss_pred eeecCCc
Q psy2519 244 ILLADSR 250 (622)
Q Consensus 244 ~~L~~G~ 250 (622)
+++++|.
T Consensus 204 ~~~~~~~ 210 (213)
T cd03279 204 EVIKTPG 210 (213)
T ss_pred EEEecCC
Confidence 9999875
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=3e-22 Score=234.15 Aligned_cols=125 Identities=30% Similarity=0.393 Sum_probs=108.7
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC---Ce
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP---AL 192 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P---~l 192 (622)
|||.|++.|...+.. ..+..+.++.+||.+ ..++.+.+ ||||||||+.||++|+.+| ++
T Consensus 792 ltv~E~l~~f~~~~~---------i~~~l~~L~~vgL~~l~l~~~~~t--------LSgGEkQRl~LAraL~~~p~~~~l 854 (943)
T PRK00349 792 MTVEEALEFFEAIPK---------IARKLQTLVDVGLGYIKLGQPATT--------LSGGEAQRVKLAKELSKRSTGKTL 854 (943)
T ss_pred CcHHHHHHHHHhchh---------hhHHHHHHHHCCCCcccccCCccc--------CCHHHHHHHHHHHHHhcCCCCCeE
Confidence 799999999765421 123457899999986 46777776 9999999999999999999 99
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 193 LlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ +.+ +.+|+++.| ++|++++.|+++++.
T Consensus 855 lILDEPtsGLD~~~~~~L~~~L~~l~~-~G~TVIiitH~~-~~i-~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~ 926 (943)
T PRK00349 855 YILDEPTTGLHFEDIRKLLEVLHRLVD-KGNTVVVIEHNL-DVI-KTADWIIDLGPEGGDGGGEIVATGTPEEVA 926 (943)
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-HhCCEEEEecCCcCCCCCEEEEeCCHHHHH
Confidence 999999999999999999999999987 699999999997 455 689999999 799999999999875
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.5e-23 Score=224.79 Aligned_cols=197 Identities=23% Similarity=0.286 Sum_probs=155.9
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++||+..-+.|. ..+++.++++ ++|+.+.|.|++ |||||||+|+|+|+-+-+ +|+|..-
T Consensus 391 ~~i~~~nl~l~~p~~~-~ll~~l~~~v-----~~G~~llI~G~S-----G~GKTsLlRaiaGLWP~g---~G~I~~P--- 453 (604)
T COG4178 391 HGITLENLSLRTPDGQ-TLLSELNFEV-----RPGERLLITGES-----GAGKTSLLRALAGLWPWG---SGRISMP--- 453 (604)
T ss_pred ceeEEeeeeEECCCCC-eeeccceeee-----CCCCEEEEECCC-----CCCHHHHHHHHhccCccC---CCceecC---
Confidence 5678899999876555 6789999999 678888888775 899999999999999875 7888653
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
....+-|+||.+.+... |.+|.+.++.... ..+ .+.+.++|.++||.+..++.-+. -..-+-||+|
T Consensus 454 ----~~~~~lflpQ~PY~p~G-tLre~l~YP~~~~---~~~----d~~l~~vL~~vgL~~L~~rl~~~--~~W~~vLS~G 519 (604)
T COG4178 454 ----ADSALLFLPQRPYLPQG-TLREALCYPNAAP---DFS----DAELVAVLHKVGLGDLAERLDEE--DRWDRVLSGG 519 (604)
T ss_pred ----CCCceEEecCCCCCCCc-cHHHHHhCCCCCC---CCC----hHHHHHHHHHcCcHHHHHHHhcc--CcHhhhcChh
Confidence 12457899999987666 9999998864332 122 23466889999998765543222 1233459999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||+++||.|+++|++++|||-|++||+.+...+.+.+++-. .+.|||.|.|.+ .+..+.++.+-+.
T Consensus 520 EqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~l--p~~tvISV~Hr~--tl~~~h~~~l~l~ 587 (604)
T COG4178 520 EQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEEL--PDATVISVGHRP--TLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhC--CCCEEEEeccch--hhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999854 479999999986 5667777765553
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.1e-22 Score=195.82 Aligned_cols=161 Identities=13% Similarity=0.120 Sum_probs=115.9
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLY 124 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~ 124 (622)
.+..+++|+| ||||||||.+|........ . ....|..... .....+.+++|+..+.+ |
T Consensus 21 ~gl~~i~G~N-----GsGKStll~ai~~~l~~~~---~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~------~-- 83 (198)
T cd03276 21 PRVNFIVGNN-----GSGKSAILTALTIGLGGKA---S-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA------N-- 83 (198)
T ss_pred CCeEEEECCC-----CCcHHHHHHHHHHHhcCCc---c-cccccccHHHHhhCCCCeEEEEEEEEcCCccC------C--
Confidence 4566777777 7999999999985433210 0 1111221111 12456888898776555 1
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH----hhCCCeEEEeCCCC
Q psy2519 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL----LTDPALLLCDEPTT 200 (622)
Q Consensus 125 f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL----~~~P~lLlLDEPTs 200 (622)
.. . ....++++++++. .+..++++++ ||+|||||++||++| +.+|++++|||||+
T Consensus 84 -----~~----~-~~~~~~~~~~l~~---~~~~~~~~~~--------lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 84 -----PL----C-VLSQDMARSFLTS---NKAAVRDVKT--------LSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred -----cC----C-HHHHHHHHHHhcc---ccccCCcccc--------cChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 10 1 1123456777776 5667777666 999999999999999 58999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhc--CCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 201 GLDSFSASKLIRMMRELTSQ--RKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 201 gLD~~~~~~i~~~l~~l~~~--~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||+..+..+.+.|++++++ .+.||++++|++ +++.+ +|+|.+|..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~-~~i~~-~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDI-SGLAS-SDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcc-ccccc-ccceeEEEecC
Confidence 99999999999999998753 246899999997 56665 49999998764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PF01061 ABC2_membrane: ABC-2 type transporter; InterPro: IPR013525 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-23 Score=206.86 Aligned_cols=209 Identities=29% Similarity=0.451 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhh
Q psy2519 346 TIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDM 424 (622)
Q Consensus 346 ~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~e 424 (622)
+|++.+++|+++..+|||... ..+++..+++++++|.+|.++ ++..++. ++.|.+++.+...++....+....+.+|
T Consensus 1 ~q~~~l~~r~~~~~~r~~~~~~~~~~~~pl~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (210)
T PF01061_consen 1 RQIWALLRREFKRFWRNPFLGLIWSLIFPLLLLLIFGFIFGKL-GNSQDGF-NRPGLIFGSIIFSFFSSISGSSISFERE 78 (210)
T ss_pred CHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHhcc-ccccccc-ccceeeehhhHHhhhhhcccchhhhhhh
Confidence 599999999999999999888 899999999999999999998 6444444 7788888888887766666665778899
Q ss_pred hhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy2519 425 LPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFS 504 (622)
Q Consensus 425 r~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~ 504 (622)
+..+.||+.++.|++.+|++|+.+.+++..++.++++.++.|++.|++.+ +|+.+++.+++..+++.++|.+++.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~g~~~~~~~~ 156 (210)
T PF01061_consen 79 RGTLERERASPLYSPFAYLLAKVLSAFLISLIISLIVLIIAYLLFGLDFE--SFFLFLLILLLSILCSSGLGLLLAALFP 156 (210)
T ss_pred ccccccccccccccchhhheeeccccccccccccchhhhhhhhhhccccc--cchheecccccccccccccccccccchh
Confidence 99999999999999999999999999999999999999999999999887 7788888888899999999999999999
Q ss_pred CHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHh
Q psy2519 505 SVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQW 558 (622)
Q Consensus 505 ~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef 558 (622)
+...+..+.+.+..++++++|.+.|.+++|+|++|+.|+||++|+.|++..++|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~sg~~~p~~~lP~~~~~i~~~~P~~~~~~~~r~~~f 210 (210)
T PF01061_consen 157 SFRDASAISSLILLLLFFLSGVFFPLSSLPSWLRWISYLNPLTYAVEALRAALF 210 (210)
T ss_pred hhhhhhhhhhhcccccccceeeecchHHChHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999999998876
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A number of bacterial transport systems have been found to contain integral membrane components that have similar sequences []: these systems fit the characteristics of ATP-binding cassette transporters []. The proteins form homo- or hetero-oligomeric channels, allowing ATP-mediated transport. Hydropathy analysis of the proteins has revealed the presence of 6 possible transmembrane regions. These proteins belong to family 2 of ABC transporters.; GO: 0016020 membrane |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=225.24 Aligned_cols=125 Identities=29% Similarity=0.367 Sum_probs=106.0
Q ss_pred CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhh---CCC
Q psy2519 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLT---DPA 191 (622)
Q Consensus 116 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~---~P~ 191 (622)
.|||.|.+.|...+.. ..+..++++.+||.. ..++.+.+ |||||+||+.||++|+. +|+
T Consensus 789 ~~tv~e~~~f~~~~~~---------i~~~l~~L~~~gL~~l~l~~~~~t--------LSgGe~QRl~LA~aL~~~~~~p~ 851 (924)
T TIGR00630 789 DMTVEEAYEFFEAVPS---------ISRKLQTLCDVGLGYIKLGQPATT--------LSGGEAQRIKLAKELSKRSTGRT 851 (924)
T ss_pred CCcHHHHHHHHHhccc---------hhHHHHHHHHcCCCchhhcCcccc--------CCHHHHHHHHHHHHHhhcCCCCC
Confidence 4788888888754421 113457899999976 46777666 99999999999999997 599
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAA 260 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~ 260 (622)
+++|||||+|||+..+..+.+.|+++.+ .|.|||+++|++ ..+ +.+|+++.| ++|++++.|+++++
T Consensus 852 llILDEPtsgLD~~~~~~L~~~L~~l~~-~G~TVIvi~H~~-~~i-~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 852 LYILDEPTTGLHFDDIKKLLEVLQRLVD-QGNTVVVIEHNL-DVI-KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 9999999999999999999999999987 699999999997 455 679999999 79999999998864
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.7e-22 Score=211.85 Aligned_cols=200 Identities=22% Similarity=0.277 Sum_probs=155.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+.+.||+|.|. ++.-+++++++-+ ..+.++.++||| |||||||||++.|.+.| ..|.|.-.-+
T Consensus 389 vi~~~nv~F~y~-~~~~iy~~l~fgi-----d~~srvAlVGPN-----G~GKsTLlKl~~gdl~p---~~G~vs~~~H-- 452 (614)
T KOG0927|consen 389 VIMVQNVSFGYS-DNPMIYKKLNFGI-----DLDSRVALVGPN-----GAGKSTLLKLITGDLQP---TIGMVSRHSH-- 452 (614)
T ss_pred eEEEeccccCCC-Ccchhhhhhhccc-----CcccceeEecCC-----CCchhhhHHHHhhcccc---cccccccccc--
Confidence 456789999984 3336778888877 567788899888 79999999999999999 5888864332
Q ss_pred CccccccEEEEecC--CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQH--DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~--~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLS 173 (622)
.++++--|+ +.+.-+.++.|++.=.. +.....+.+..++.++||. +..+.++++ ||
T Consensus 453 -----~~~~~y~Qh~~e~ldl~~s~le~~~~~~--------~~~~~~e~~r~ilgrfgLtgd~q~~p~~~--------LS 511 (614)
T KOG0927|consen 453 -----NKLPRYNQHLAEQLDLDKSSLEFMMPKF--------PDEKELEEMRSILGRFGLTGDAQVVPMSQ--------LS 511 (614)
T ss_pred -----ccchhhhhhhHhhcCcchhHHHHHHHhc--------cccchHHHHHHHHHHhCCCccccccchhh--------cc
Confidence 234444453 44556677777764322 1122345678999999998 455666666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce-E
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-A 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i-v 252 (622)
+|||+||.+|+.++..|.+|+|||||+|||..+...+.+.|.+. . -+||+++||. ..|.++++++.+..+|.+ .
T Consensus 512 ~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~---~-Ggvv~vSHDf-rlI~qVaeEi~~c~~~~~~~ 586 (614)
T KOG0927|consen 512 DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF---P-GGVVLVSHDF-RLISQVAEEIWVCENGTVTK 586 (614)
T ss_pred cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc---C-Cceeeeechh-hHHHHHHHHhHhhccCceee
Confidence 99999999999999999999999999999999999999999876 2 3799999996 689999999999988766 4
Q ss_pred EecChH
Q psy2519 253 FIGSKD 258 (622)
Q Consensus 253 ~~G~~~ 258 (622)
+.|+..
T Consensus 587 ~~G~i~ 592 (614)
T KOG0927|consen 587 WDGDIE 592 (614)
T ss_pred cCccHH
Confidence 556554
|
|
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.7e-22 Score=210.69 Aligned_cols=227 Identities=20% Similarity=0.218 Sum_probs=157.4
Q ss_pred cccccceEEeecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC
Q psy2519 4 TASTSKTVILFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC 83 (622)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~ 83 (622)
+.++.+++-...+.+.++|+++++ -++.+++++.+++ .+|++..++|+| ||||||+|++|+|+..|..
T Consensus 62 ~~tg~l~s~~~s~dvk~~sls~s~--~g~~l~kd~~~El-----~~g~rygLiG~n-----G~Gkst~L~~i~~~e~P~p 129 (614)
T KOG0927|consen 62 SVTGNLFSHPISRDVKIESLSLSF--HGVELIKDVTLEL-----NRGRRYGLIGPN-----GSGKSTFLRAIAGREVPIP 129 (614)
T ss_pred hcccccccCcccccceeeeeeecc--CCceeeeeeeEEe-----cCCceEEEEcCC-----CCcHhHHHHHHhcCCCCCC
Confidence 556777888888999999999996 4567899999999 788899999887 7999999999999998832
Q ss_pred ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH-c-----------------CCCccccHHHHHHHHH
Q psy2519 84 IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL-L-----------------KLDRRVKAYQRIALIN 145 (622)
Q Consensus 84 ~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l-----------------~~~~~~~~~~~~~~v~ 145 (622)
..=.++.-.+++.+...+.+-+|.+ +.-..+..+..... + +.. .+..+....++.
T Consensus 130 -~~~d~y~ls~e~~ps~~~av~~v~~-----~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~-~~d~~~~~~k~~ 202 (614)
T KOG0927|consen 130 -EHIDFYLLSREIEPSEKQAVQAVVM-----ETDHERKRLEYLAEDLAQACDDKEKDELDELYERLD-EMDNDTFEAKAA 202 (614)
T ss_pred -cccchhhhcccCCCchHHHHHHHhh-----hhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHH-hhCchhHHHHHH
Confidence 1222333333332211111111110 00011111111100 0 000 011122334555
Q ss_pred HHHHHhCC-CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 146 SLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 146 ~~l~~lgL-~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
+++..+|- .+..++.+.+ +|||+|.|+++||+|..+|++|||||||++||..+..-+-+.|.+.-+ .+
T Consensus 203 ~il~glgf~~~m~~k~~~~--------~SgGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~---~~ 271 (614)
T KOG0927|consen 203 KILHGLGFLSEMQDKKVKD--------LSGGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDR---II 271 (614)
T ss_pred HHHHhcCCCHhHHHHHhhc--------cCchHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccC---ce
Confidence 66766665 4456666665 999999999999999999999999999999999999999999887532 28
Q ss_pred EEEEeccCcHHHHhhccceeeecCCc-eEEecChHHHH
Q psy2519 225 VLCTIHQPSSELIDMFDKIILLADSR-TAFIGSKDAAL 261 (622)
Q Consensus 225 vi~~tH~~~~~i~~~~D~v~~L~~G~-iv~~G~~~~~~ 261 (622)
+|+++|. .+.+-..|.+|+-|.+++ +.|.|+-+...
T Consensus 272 lVi~sh~-QDfln~vCT~Ii~l~~kkl~~y~Gnydqy~ 308 (614)
T KOG0927|consen 272 LVIVSHS-QDFLNGVCTNIIHLDNKKLIYYEGNYDQYV 308 (614)
T ss_pred EEEEecc-hhhhhhHhhhhheecccceeeecCCHHHHh
Confidence 9999998 578999999999999999 56677776543
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.1e-22 Score=188.14 Aligned_cols=228 Identities=17% Similarity=0.191 Sum_probs=171.1
Q ss_pred cccCCccccc--cccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCc-eeeEEEECCE
Q psy2519 18 EEVPNVDFSE--IVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCI-IDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~--~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~-~~G~I~~~G~ 94 (622)
+++.|++..+ +.|.+.+++++|+++ ..|+...++|. ||||||-.-|+|.|..+.+-. +.-+..+++.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltl-----nEGEi~GLVGE-----SGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~i 73 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTL-----NEGEIRGLVGE-----SGSGKSLIAKAICGVNKDNWRVTADRMRFDDI 73 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeee-----ccceeeeeecc-----CCCchhHHHHHHhcccccceEEEhhhcccccc
Confidence 4566666554 357789999999999 45555555554 589999999999999886421 2334555665
Q ss_pred ecCc----c----ccccEEEEecCCC--CCCCCCHHHHHHHHHHc--CCCcccc-HHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 95 PVEG----K----FRSACGFMYQHDL--FSPSLTVYEHLYFMALL--KLDRRVK-AYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~--l~~~lTV~E~l~f~~~l--~~~~~~~-~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
++-+ + +.+.|+++||++. |.|+-+|-..+.-..-. ..++.-. -.=+++++-++|.++|+.+..|-.-
T Consensus 74 dLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~ 153 (330)
T COG4170 74 DLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMR 153 (330)
T ss_pred hhhcCChHHhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHH
Confidence 5421 2 3466789999974 66766665444321111 0111000 0012445678999999988776443
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
. +|.+ |.-||-|+|.||.|++.+|++|+.||||+.+||.++.+++++|.++.+.+|+||++++||. ..+-+.||
T Consensus 154 S--YP~E---lTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl-~~is~W~d 227 (330)
T COG4170 154 S--YPYE---LTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDL-QMISQWAD 227 (330)
T ss_pred h--Ccch---hccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccH-HHHHHHhh
Confidence 2 3666 9999999999999999999999999999999999999999999999998899999999996 68889999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++-+|.=|+-++.++.++++
T Consensus 228 ~i~VlYCGQ~~ESa~~e~l~ 247 (330)
T COG4170 228 KINVLYCGQTVESAPSEELV 247 (330)
T ss_pred heEEEEecccccccchhHHh
Confidence 99999999999999999886
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.4e-21 Score=195.95 Aligned_cols=180 Identities=15% Similarity=0.131 Sum_probs=115.0
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-c-Cc-------cccccEEEEe--cCCC-CCCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP-V-EG-------KFRSACGFMY--QHDL-FSPSLT 118 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~-~-~~-------~~r~~igyV~--Q~~~-l~~~lT 118 (622)
+..+|+|+| ||||||||++|++.+.+. .|++..++.+ + .. .....+..++ |++. ..-..+
T Consensus 23 ~~~~i~G~N-----GsGKStll~ai~~~l~~~---~~~~r~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~~~ 94 (247)
T cd03275 23 RFTCIIGPN-----GSGKSNLMDAISFVLGEK---SSHLRSKNLKDLIYRARVGKPDSNSAYVTAVYEDDDGEEKTFRRI 94 (247)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHhCCC---cccccccchhhhcccCccccCCCceEEEEEEEEcCCCcEEEEEEE
Confidence 356677777 899999999999988752 4655443321 0 00 0122333333 4321 111111
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC---------ccCCcCC-----CCccccChHHHHHHHHHH
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT---------RIGSSSI-----TQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~---------~v~~~~~-----~~~~gLSgGqrqRvsIA~ 184 (622)
+.+.... .... ....+ .+.++++++.+|+...... .+.+..| ..+..||||||||++||+
T Consensus 95 ~~~~~~~-~~in-gk~~s----~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~~~~~~~~~LS~G~k~rl~la~ 168 (247)
T cd03275 95 ITGGSSS-YRIN-GKVVS----LKEYNEELEKINILVKARNFLVFQGDVESIASKNPPGKRFRDMDNLSGGEKTMAALAL 168 (247)
T ss_pred EECCceE-EEEC-CEEec----HHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcchhhhhHHHcCHHHHHHHHHHH
Confidence 1111100 0011 11111 2345688899998532111 1111111 112349999999999999
Q ss_pred HHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 185 ELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 185 aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++.+ |+++++||||+|||+..+..+.+.|+++++ .|.|||++||++ ++.+.||++++|.
T Consensus 169 al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~-~g~~vi~isH~~--~~~~~~d~i~~~~ 232 (247)
T cd03275 169 LFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAG-PNFQFIVISLKE--EFFSKADALVGVY 232 (247)
T ss_pred HHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhcc-CCcEEEEEECCH--HHHhhCCeEEEEE
Confidence 99975 899999999999999999999999999986 599999999995 5678999999996
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.2e-20 Score=176.04 Aligned_cols=211 Identities=18% Similarity=0.200 Sum_probs=157.4
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+++.|+.|+|. ++-|++.+.|+.+ ..+....++|.| |||||||||+|+|..--+ .|.|.++|++
T Consensus 12 ~aievsgl~f~y~-~~dP~~~Dfnldl-----p~gsRcLlVGaN-----GaGKtTlLKiLsGKhmv~---~~~v~Vlgrs 77 (291)
T KOG2355|consen 12 FAIEVSGLQFKYK-VSDPIFFDFNLDL-----PAGSRCLLVGAN-----GAGKTTLLKILSGKHMVG---GGVVQVLGRS 77 (291)
T ss_pred ceEEEeccEEecc-cCCceEEEEeecc-----CCCceEEEEecC-----CCchhhhHHHhcCccccc---CCeEEEcCcC
Confidence 4578999999984 5558888999988 344455555555 899999999999976553 5899999987
Q ss_pred cCc---------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc
Q psy2519 96 VEG---------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR 160 (622)
Q Consensus 96 ~~~---------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~ 160 (622)
.-. ++++..+.-- +-.+-..+++++ +.|+..- ... + |-+++++.+++.-.. +
T Consensus 78 aFhDt~l~~Sgdl~YLGgeW~~~~~~ag-evplq~D~sae~-mifgV~g-----~dp-~---Rre~LI~iLDIdl~W--R 144 (291)
T KOG2355|consen 78 AFHDTSLESSGDLSYLGGEWSKTVGIAG-EVPLQGDISAEH-MIFGVGG-----DDP-E---RREKLIDILDIDLRW--R 144 (291)
T ss_pred ccccccccccCceeEecccccccccccc-cccccccccHHH-HHhhccC-----CCh-h---HhhhhhhheeccceE--E
Confidence 521 2344444332 222334566655 4454321 111 2 335677777764322 1
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
... +|-|||+||.|++.|++--++|+|||-|-.||..++.++++.+++-++++|.|||..||-. +-++...
T Consensus 145 mHk--------vSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIF-DGLe~Wp 215 (291)
T KOG2355|consen 145 MHK--------VSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIF-DGLETWP 215 (291)
T ss_pred Eee--------ccccchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeec-cchhhcc
Confidence 222 9999999999999999999999999999999999999999999999998999999999985 5788999
Q ss_pred cceeeecCCceEEecChHHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.+++.+++|+++..-+.+++.+
T Consensus 216 thl~yi~~Gkl~~~l~~~~i~e 237 (291)
T KOG2355|consen 216 THLVYIKSGKLVDNLKYQKIKE 237 (291)
T ss_pred hhEEEecCCeeeeccccchhhh
Confidence 9999999999997655554443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=3.7e-20 Score=193.61 Aligned_cols=179 Identities=20% Similarity=0.204 Sum_probs=141.9
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
+.+..|++.-+.-..++...++|+| |-||||+.++|+|.++| ++|+ .. .-+++|=||--.--
T Consensus 352 ~g~F~L~V~~G~i~~gEvigilGpN-----giGKTTFvk~LAG~ikP---deg~----~~------~~~vSyKPQyI~~~ 413 (591)
T COG1245 352 YGDFKLEVEEGEIYDGEVIGILGPN-----GIGKTTFVKLLAGVIKP---DEGS----EE------DLKVSYKPQYISPD 413 (591)
T ss_pred cCceEEEecCCeeecceEEEEECCC-----CcchHHHHHHHhccccC---CCCC----Cc------cceEeecceeecCC
Confidence 3344555544444567788888887 79999999999999999 4776 11 23588888854434
Q ss_pred CCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 115 PSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 115 ~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
...||++-+.-...-.... + -.-.++++-+.|++..++.+.+ |||||.|||+||.+|..+.++.+
T Consensus 414 ~~gtV~~~l~~~~~~~~~~--s-----~~~~ei~~pl~l~~i~e~~v~~--------LSGGELQRvaIaa~L~reADlYl 478 (591)
T COG1245 414 YDGTVEDLLRSAIRSAFGS--S-----YFKTEIVKPLNLEDLLERPVDE--------LSGGELQRVAIAAALSREADLYL 478 (591)
T ss_pred CCCcHHHHHHHhhhhhccc--c-----hhHHhhcCccchHHHHhccccc--------CCchhHHHHHHHHHhccccCEEE
Confidence 5679999876654322111 1 1234788899999999999887 99999999999999999999999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||++-||+..+..+.+.|+++..+.++|.+++.||. .-+--++||+++..
T Consensus 479 lDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi-~~~dyvsDr~ivF~ 530 (591)
T COG1245 479 LDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMIDYVSDRLIVFE 530 (591)
T ss_pred ecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecce-ehhhhhhceEEEEe
Confidence 99999999999999999999999998899999999996 45666789988774
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.6e-20 Score=197.66 Aligned_cols=199 Identities=25% Similarity=0.308 Sum_probs=137.5
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
.+++.+.. +|++..|.+-+|++ ..|....++|+| |+|||||||+|+. |+|. |-++.+
T Consensus 82 ~~~~fdLa--~G~k~LL~~a~L~L-----~~GrRYGLvGrN-----G~GKsTLLRaia~---------~~v~--~f~veq 138 (582)
T KOG0062|consen 82 HIDNFDLA--YGGKILLNKANLTL-----SRGRRYGLVGRN-----GIGKSTLLRAIAN---------GQVS--GFHVEQ 138 (582)
T ss_pred eeeeeeee--ecchhhhcCCceee-----ecccccceeCCC-----CCcHHHHHHHHHh---------cCcC--ccCchh
Confidence 34455555 58888999999999 455677778787 7999999999995 3332 222222
Q ss_pred cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHH
Q psy2519 99 KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 99 ~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGq 176 (622)
+.+- -+++-. +.+....++.+-+.--..+.. ..+..+..+++|..+|.++. ..+++++ ||||-
T Consensus 139 E~~g--~~t~~~~~~l~~D~~~~dfl~~e~~l~~-----~~~l~ei~~~~L~glGFt~emq~~pt~s--------lSGGW 203 (582)
T KOG0062|consen 139 EVRG--DDTEALQSVLESDTERLDFLAEEKELLA-----GLTLEEIYDKILAGLGFTPEMQLQPTKS--------LSGGW 203 (582)
T ss_pred heec--cchHHHhhhhhccHHHHHHHHhhhhhhc-----cchHHHHHHHHHHhCCCCHHHHhccccc--------cCcch
Confidence 2221 122221 233334333332222111110 00233344458899999654 4566666 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce-EEec
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT-AFIG 255 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i-v~~G 255 (622)
|-|+++||||..+|++|||||||+.||..+..-+.+.|... +.|+|+|+|| +..+-+.|..|+-+++-++ .|.|
T Consensus 204 rMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~----~~T~liVSHD-r~FLn~V~tdIIH~~~~kL~~YkG 278 (582)
T KOG0062|consen 204 RMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW----KITSLIVSHD-RNFLNTVCTDIIHLENLKLDYYKG 278 (582)
T ss_pred hhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC----CceEEEEecc-HHHHHHHHHHHHHHhhhhhhhhcC
Confidence 99999999999999999999999999999999999998874 4799999999 6888899999998887666 4456
Q ss_pred ChHHH
Q psy2519 256 SKDAA 260 (622)
Q Consensus 256 ~~~~~ 260 (622)
.-++.
T Consensus 279 N~~~F 283 (582)
T KOG0062|consen 279 NYSQF 283 (582)
T ss_pred cHHHH
Confidence 55543
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-19 Score=193.16 Aligned_cols=198 Identities=22% Similarity=0.234 Sum_probs=153.8
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
.++++.+|+|.|..++.+.+..+++.+. ...+...+|.| |+||||+++++.|-+.| .+|.+-+.+
T Consensus 361 p~l~i~~V~f~y~p~~y~~~~~~~~d~e-----~~sRi~~vg~n-----g~gkst~lKi~~~~l~~---~rgi~~~~~-- 425 (582)
T KOG0062|consen 361 PNLRISYVAFEYTPSEYQWRKQLGLDRE-----SDSRISRVGEN-----GDGKSTLLKILKGDLTP---TRGIVGRHP-- 425 (582)
T ss_pred CeeEEEeeeccCCCcchhhhhccCCccc-----hhhhhheeccC-----chhHHHHHHHHhccCCc---ccceeeecc--
Confidence 5677888999986666578888888773 44466777777 79999999999998887 478776654
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg 174 (622)
|.+++|-+|...=+-.++|-+- .+-.+.+-+ .. ++.+++-+..+||.. .+...+.+ |||
T Consensus 426 -----r~ri~~f~Qhhvd~l~~~v~~v-d~~~~~~pG--~~----~ee~r~hl~~~Gl~g~la~~si~~--------LSG 485 (582)
T KOG0062|consen 426 -----RLRIKYFAQHHVDFLDKNVNAV-DFMEKSFPG--KT----EEEIRRHLGSFGLSGELALQSIAS--------LSG 485 (582)
T ss_pred -----cceecchhHhhhhHHHHHhHHH-HHHHHhCCC--CC----HHHHHHHHHhcCCCchhhhccccc--------cCC
Confidence 5789999997543334444432 333333321 22 234567889999964 44554555 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
|||-||++|.....+|.+|+|||||+-||-.+-..+.+.|+.+. | .||+|||| .+.+...|+.+++.++|++.-
T Consensus 486 GQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~---G-GVv~VSHd-~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 486 GQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN---G-GVVLVSHD-EEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred cchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC---C-cEEEEECc-HHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999999999999999999999873 3 59999999 478999999999999999965
|
|
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=6.9e-19 Score=189.09 Aligned_cols=210 Identities=17% Similarity=0.153 Sum_probs=153.5
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
-++.+++++|+++-+..+..+.+++|+.| +.|..++|.+| ||||||+|||+|+|+-+- .+|++.--.
T Consensus 430 ~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V------~~g~~LLItG~----sG~GKtSLlRvlggLWp~---~~G~l~k~~ 496 (659)
T KOG0060|consen 430 ADNAIEFEEVSLSTPTNGDLLIENLSLEV------PSGQNLLITGP----SGCGKTSLLRVLGGLWPS---TGGKLTKPT 496 (659)
T ss_pred ccceEEeeeeeecCCCCCceeeeeeeeEe------cCCCeEEEECC----CCCchhHHHHHHhccccc---CCCeEEecc
Confidence 34778999999998764555678899999 45555666555 499999999999999986 489987543
Q ss_pred EecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc------CCccCCcCCC
Q psy2519 94 KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ------HTRIGSSSIT 167 (622)
Q Consensus 94 ~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~------~~~v~~~~~~ 167 (622)
+.- .+.+-||||.|.+.-. |.||.+.|+.+--.+ .++....+++.+.|+.++|.|.. |+.+...|-.
T Consensus 497 ~~~----~~~lfflPQrPYmt~G-TLRdQvIYP~~~~~~--~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~d 569 (659)
T KOG0060|consen 497 DGG----PKDLFFLPQRPYMTLG-TLRDQVIYPLKAEDM--DSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMD 569 (659)
T ss_pred cCC----CCceEEecCCCCcccc-chhheeeccCccccc--cccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHh
Confidence 321 1568899999876555 999999997432211 11111234556677777666533 3333333333
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
. ||+||+||+++||-+.++|++-+|||-||++|......+.+.+++ .|+|.|-|.|.. .+.+.=|.++-|+
T Consensus 570 v---LS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~----~giT~iSVgHRk--SL~kfHd~~L~~~ 640 (659)
T KOG0060|consen 570 V---LSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE----MGITFISVGHRK--SLWKFHDYVLRMD 640 (659)
T ss_pred h---cCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH----cCCeEEEeccHH--HHHhhhhEEEEec
Confidence 3 999999999999999999999999999999999888777776654 699999999975 5667778888886
Q ss_pred C-CceE
Q psy2519 248 D-SRTA 252 (622)
Q Consensus 248 ~-G~iv 252 (622)
. |+..
T Consensus 641 g~g~w~ 646 (659)
T KOG0060|consen 641 GRGSWR 646 (659)
T ss_pred CCCceE
Confidence 3 4443
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-19 Score=184.88 Aligned_cols=188 Identities=26% Similarity=0.352 Sum_probs=145.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.+-+.||+|.| .|..+.+..+++-+ .-...++|+||| |.||||||++|.|.+.|+ .|+..=|
T Consensus 586 vLGlH~VtFgy-~gqkpLFkkldFGi-----DmdSRiaIVGPN-----GVGKSTlLkLL~Gkl~P~---~GE~RKn---- 647 (807)
T KOG0066|consen 586 VLGLHDVTFGY-PGQKPLFKKLDFGI-----DMDSRIAIVGPN-----GVGKSTLLKLLIGKLDPN---DGELRKN---- 647 (807)
T ss_pred eeecccccccC-CCCCchhhcccccc-----cccceeEEECCC-----CccHHHHHHHHhcCCCCC---cchhhcc----
Confidence 34578999998 58889999999877 334578888887 799999999999999994 6776432
Q ss_pred CccccccEEEEecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCc-cCCcCCCCccccC
Q psy2519 97 EGKFRSACGFMYQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTR-IGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~-v~~~~~~~~~gLS 173 (622)
.|-+||+.-|+. .|-..-|..|.|.-. +.+ +.. .++..|..+||...+++. +.+ ||
T Consensus 648 ---hrL~iG~FdQh~~E~L~~Eetp~EyLqr~--FNl----pyq----~ARK~LG~fGL~sHAHTikikd--------LS 706 (807)
T KOG0066|consen 648 ---HRLRIGWFDQHANEALNGEETPVEYLQRK--FNL----PYQ----EARKQLGTFGLASHAHTIKIKD--------LS 706 (807)
T ss_pred ---ceeeeechhhhhHHhhccccCHHHHHHHh--cCC----ChH----HHHHHhhhhhhhhccceEeeee--------cC
Confidence 345789988863 566666777766432 222 222 234678999998888764 444 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||-||++|.--+..|+||||||||++||..+...+.+.|++.. -.||+|+||. ..+.+.-..++++.+
T Consensus 707 GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~----GgVi~VsHDe-RLi~eT~C~LwVvE~ 776 (807)
T KOG0066|consen 707 GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN----GGVIMVSHDE-RLIVETDCNLWVVEN 776 (807)
T ss_pred CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc----CcEEEEeccc-ceeeecCceEEEEcc
Confidence 999999999999999999999999999999999999999998863 3699999995 455555556666654
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.6e-19 Score=174.15 Aligned_cols=78 Identities=19% Similarity=0.261 Sum_probs=66.8
Q ss_pred cChHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCC-CEEEEEeccCcHHHHhhcc--cee
Q psy2519 172 LSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRK-KTVLCTIHQPSSELIDMFD--KII 244 (622)
Q Consensus 172 LSgGqrqRvsIA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g-~tvi~~tH~~~~~i~~~~D--~v~ 244 (622)
||||||||+.++++| +.+|+++++||||+|||+.++..+.+.+++++++.| .|+|++||++ .++.+.+| +++
T Consensus 127 LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~-~~~~~~~~~~~v~ 205 (213)
T cd03277 127 QSGGERSVSTMLYLLSLQELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKL-LPGLNYHEKMTVL 205 (213)
T ss_pred ccccHHHHHHHHHHHHHHhccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhh-ccCCcccCceEEE
Confidence 999999998877554 589999999999999999999999999999987425 5899999996 45666776 788
Q ss_pred eecCCc
Q psy2519 245 LLADSR 250 (622)
Q Consensus 245 ~L~~G~ 250 (622)
+|++|+
T Consensus 206 ~l~~g~ 211 (213)
T cd03277 206 CVYNGP 211 (213)
T ss_pred EEecCc
Confidence 888886
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.9e-18 Score=202.41 Aligned_cols=137 Identities=24% Similarity=0.380 Sum_probs=113.4
Q ss_pred CCCCCCHHHHHHHHHHcCCCcc---c---cHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRR---V---KAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~---~---~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
-+..+||.|.+.|.-.+..+.. . -..+..++++ .++.+||.+. .|+.+.+ |||||||||.||++
T Consensus 433 ~~~~~~v~~~~~~~~~~~~~~~~~~~a~~~~~~i~~rl~-~L~~vGL~~l~l~r~~~~--------LSgGE~QRv~LA~a 503 (943)
T PRK00349 433 EVSELSIGEALEFFENLKLSEQEAKIAEPILKEIRERLK-FLVDVGLDYLTLSRSAGT--------LSGGEAQRIRLATQ 503 (943)
T ss_pred HHhcCcHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHH-HhhccccCCCCCCCchhh--------CCHHHHHHHHHHHH
Confidence 3567899999999654433211 0 0123345554 7889999876 7888877 99999999999999
Q ss_pred HhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecCh
Q psy2519 186 LLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSK 257 (622)
Q Consensus 186 L~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~ 257 (622)
|..+| ++++|||||+|||+..+.++.+.|+++++ .|.|||+++|++ +++ ..||+|++| ++|++++.|++
T Consensus 504 L~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~-~G~TVIvVeH~~-~~i-~~aD~vi~LgpgaG~~~G~iv~~g~~ 580 (943)
T PRK00349 504 IGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRD-LGNTLIVVEHDE-DTI-RAADYIVDIGPGAGVHGGEVVASGTP 580 (943)
T ss_pred HhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHH-HhCCEEEEeccccCCCCCEEeeccCH
Confidence 99997 99999999999999999999999999986 699999999996 455 469999999 99999999999
Q ss_pred HHHH
Q psy2519 258 DAAL 261 (622)
Q Consensus 258 ~~~~ 261 (622)
+++.
T Consensus 581 ~e~~ 584 (943)
T PRK00349 581 EEIM 584 (943)
T ss_pred HHHh
Confidence 9874
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.3e-18 Score=171.32 Aligned_cols=80 Identities=23% Similarity=0.226 Sum_probs=72.5
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+||||++.|+++ +.+|+++++|||++|||+..+..+. ..++++.+ .|.|+|++||+. ++.+.+|++..+++|+
T Consensus 92 fs~g~~~~~~i~~~-~~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~-~~~~vi~~tH~~--~l~~~~d~~~~l~~g~ 167 (200)
T cd03280 92 FSSHMKNIARILQH-ADPDSLVLLDELGSGTDPVEGAALAIAILEELLE-RGALVIATTHYG--ELKAYAYKREGVENAS 167 (200)
T ss_pred HHHHHHHHHHHHHh-CCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECCHH--HHHHHHhcCCCeEEEE
Confidence 99999999999988 4899999999999999999999996 57888876 689999999983 6789999999999999
Q ss_pred eEEec
Q psy2519 251 TAFIG 255 (622)
Q Consensus 251 iv~~G 255 (622)
+++++
T Consensus 168 l~~~~ 172 (200)
T cd03280 168 MEFDP 172 (200)
T ss_pred EEEec
Confidence 99874
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.3e-18 Score=200.01 Aligned_cols=136 Identities=26% Similarity=0.381 Sum_probs=110.4
Q ss_pred CCCCCHHHHHHHHHHcCCCccccH------HHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKA------YQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+-.|||.|.+.|...+.......+ .+..+++ +.+..+||... .++.+.+ |||||+|||.||++|
T Consensus 432 ~~~~~v~~~~~~~~~l~~~~~~~~ia~~i~~~i~~rl-~~L~~vgL~~l~l~r~~~t--------LSGGE~QRv~LA~aL 502 (924)
T TIGR00630 432 VSELSIREAHEFFNQLDLTPEEKKIAEEILKEIKERL-GFLIDVGLDYLTLSRAAGT--------LSGGEAQRIRLATQI 502 (924)
T ss_pred HhcCCHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHH-HhHhhccccccccCCCcCc--------CCHHHHHHHHHHHHH
Confidence 357899999999876543211000 1222233 34778898765 6777777 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
+.+| ++++|||||+|||+..+..+.+.|+++++ .|.|||+++|++ +.+ ..||++++| ++|++++.|+++
T Consensus 503 ~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~-~G~TVIvVeHd~-~~i-~~aD~vi~LgpgaG~~~G~Iv~~g~~~ 579 (924)
T TIGR00630 503 GSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRD-LGNTVIVVEHDE-ETI-RAADYVIDIGPGAGIHGGEVVASGTPE 579 (924)
T ss_pred hhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH-HHH-hhCCEEEEecccccCCCCEEeeccCHH
Confidence 9986 89999999999999999999999999987 699999999996 455 589999999 899999999998
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
++.
T Consensus 580 el~ 582 (924)
T TIGR00630 580 EIL 582 (924)
T ss_pred HHh
Confidence 874
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-17 Score=183.27 Aligned_cols=127 Identities=31% Similarity=0.420 Sum_probs=106.4
Q ss_pred CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCC---C
Q psy2519 116 SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDP---A 191 (622)
Q Consensus 116 ~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P---~ 191 (622)
.|||.|...|+... + ...+.-+.|..+||.-.. -+...+ |||||.|||-+|.+|..+. -
T Consensus 783 ~MTveEA~~FF~~~------p---~I~rkLqtL~dVGLgYi~LGQpatT--------LSGGEaQRvKLA~EL~k~~tg~T 845 (935)
T COG0178 783 DMTVEEALEFFEAI------P---KIARKLQTLVDVGLGYIKLGQPATT--------LSGGEAQRVKLAKELSKRSTGKT 845 (935)
T ss_pred hccHHHHHHHHhcc------h---HHHHHHHHHHHcCcceEecCCcccc--------ccchHHHHHHHHHHHhhccCCCe
Confidence 58899998887532 1 122344678889997542 333333 9999999999999999877 8
Q ss_pred eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHHH
Q psy2519 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAALA 262 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~~ 262 (622)
+.+|||||+||......++++.|.+|.+ .|.|||++.|++ ++.+.||.|+=| ..|+|++.|+|+++.+
T Consensus 846 lYiLDEPTTGLH~~Di~kLl~VL~rLvd-~GnTViVIEHNL--dVIk~AD~IIDLGPeGG~~GG~iva~GTPeeva~ 919 (935)
T COG0178 846 LYILDEPTTGLHFDDIKKLLEVLHRLVD-KGNTVIVIEHNL--DVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAK 919 (935)
T ss_pred EEEeCCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeccc--ceEeecCEEEEcCCCCCCCCceEEEecCHHHHHh
Confidence 9999999999999999999999999998 799999999997 677899999999 4589999999999864
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-18 Score=178.48 Aligned_cols=169 Identities=24% Similarity=0.278 Sum_probs=122.9
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------EECCEecCccc------cccEEEEecC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-----------RVNGKPVEGKF------RSACGFMYQH 110 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-----------~~~G~~~~~~~------r~~igyV~Q~ 110 (622)
.+|+.+.++|+| |-||||-+|+|+|.++|+. |+- .+.|.++..-+ .-++..=+|-
T Consensus 98 r~G~V~GilG~N-----GiGKsTalkILaGel~PNL---G~~~~pp~wdeVi~~FrGtELq~YF~~l~~g~~r~v~K~QY 169 (591)
T COG1245 98 RPGKVVGILGPN-----GIGKSTALKILAGELKPNL---GRYEDPPSWDEVIKRFRGTELQNYFKKLYEGELRAVHKPQY 169 (591)
T ss_pred CCCcEEEEEcCC-----CccHHHHHHHHhCccccCC---CCCCCCCCHHHHHHHhhhhHHHHHHHHHHcCCcceecchHH
Confidence 456677777777 7999999999999999963 321 11111111100 0111222231
Q ss_pred ----CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 111 ----DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 111 ----~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..+-. ||.|-|.- ...+-+.+++++.++|++..|+.+.+ |||||-||++||.++
T Consensus 170 Vd~iPk~~KG-~v~elLk~------------~de~g~~devve~l~L~nvl~r~v~~--------LSGGELQr~aIaa~l 228 (591)
T COG1245 170 VDLIPKVVKG-KVGELLKK------------VDERGKFDEVVERLGLENVLDRDVSE--------LSGGELQRVAIAAAL 228 (591)
T ss_pred HHHHHHHhcc-hHHHHHHh------------hhhcCcHHHHHHHhcchhhhhhhhhh--------cCchHHHHHHHHHHH
Confidence 111111 44443321 11223567899999999999999888 999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+.+.+++++|||||-||...+....+.++++++ .+++||++.||+ ..+--++|-|.++.
T Consensus 229 ~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~-~~k~ViVVEHDL-avLD~lsD~vhI~Y 287 (591)
T COG1245 229 LRDADVYFFDEPSSYLDIRQRLNAARVIRELAE-DGKYVIVVEHDL-AVLDYLSDFVHILY 287 (591)
T ss_pred hccCCEEEEcCCcccccHHHHHHHHHHHHHHhc-cCCeEEEEechH-HHHHHhhheeEEEe
Confidence 999999999999999999999999999999997 599999999996 45555678888875
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-16 Score=153.49 Aligned_cols=74 Identities=22% Similarity=0.328 Sum_probs=68.1
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||||||||+++|++|+ .+|+++++|||+++||+..+..+.+.++++++ .|.|+|++||++ +..+.+|+++.+.
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~-~g~tiIiiSH~~--~~~~~adrvi~i~ 171 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAK-HTSQFIVITLKK--EMFENADKLIGVL 171 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEECCH--HHHhhCCeEEEEE
Confidence 9999999999999997 69999999999999999999999999999987 589999999996 4557899999996
Q ss_pred C
Q psy2519 248 D 248 (622)
Q Consensus 248 ~ 248 (622)
+
T Consensus 172 ~ 172 (178)
T cd03239 172 F 172 (178)
T ss_pred E
Confidence 4
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.9e-17 Score=159.90 Aligned_cols=147 Identities=16% Similarity=0.101 Sum_probs=102.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHD 111 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~ 111 (622)
..+++++++.. ++.+++.|+| |||||||||+|+|... +...|.++.. -.+++|.+
T Consensus 14 ~~v~n~i~l~~-------g~~~~ltGpN-----g~GKSTllr~i~~~~~--------l~~~G~~v~a-----~~~~~q~~ 68 (199)
T cd03283 14 KRVANDIDMEK-------KNGILITGSN-----MSGKSTFLRTIGVNVI--------LAQAGAPVCA-----SSFELPPV 68 (199)
T ss_pred CeecceEEEcC-------CcEEEEECCC-----CCChHHHHHHHHHHHH--------HHHcCCEEec-----CccCcccc
Confidence 34566666543 4566666666 8999999999987542 1124544432 13677878
Q ss_pred CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC
Q psy2519 112 LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191 (622)
Q Consensus 112 ~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~ 191 (622)
.+++.+|+.||+.++... ...+ .+++.++++.+++ .+|+
T Consensus 69 ~l~~~~~~~d~l~~~~s~------~~~e-~~~~~~iL~~~~~----------------------------------~~p~ 107 (199)
T cd03283 69 KIFTSIRVSDDLRDGISY------FYAE-LRRLKEIVEKAKK----------------------------------GEPV 107 (199)
T ss_pred eEEEeccchhccccccCh------HHHH-HHHHHHHHHhccC----------------------------------CCCe
Confidence 899999999999875421 1122 2557777776642 5799
Q ss_pred eEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhh--ccceeee
Q psy2519 192 LLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDM--FDKIILL 246 (622)
Q Consensus 192 lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~--~D~v~~L 246 (622)
++++|||++|+|+..+..+. .+++++++ .|.|+|++||++ +.+... .+++-.+
T Consensus 108 llllDEp~~glD~~~~~~l~~~ll~~l~~-~~~tiiivTH~~-~~~~~~~~~~~v~~~ 163 (199)
T cd03283 108 LFLLDEIFKGTNSRERQAASAAVLKFLKN-KNTIGIISTHDL-ELADLLDLDSAVRNY 163 (199)
T ss_pred EEEEecccCCCCHHHHHHHHHHHHHHHHH-CCCEEEEEcCcH-HHHHhhhcCCCeEEE
Confidence 99999999999999998875 47888876 689999999996 455443 3444443
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.1e-16 Score=192.73 Aligned_cols=136 Identities=28% Similarity=0.410 Sum_probs=108.8
Q ss_pred CCCCCHHHHHHHHHHcCCCcccc---HHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVK---AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~---~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+..|++.|-+.|...+....... -++..+|. +.|..+||.+. .++.+++ |||||+|||.||++|..+
T Consensus 424 ~~~m~i~~l~~~~~~l~~~~~~~~~il~ei~~RL-~~L~~vGL~~L~ldR~~~t--------LSGGE~QRV~LAraL~~~ 494 (1809)
T PRK00635 424 FQQMSLQELFIFLSQLPSKSLSIEEVLQGLKSRL-SILIDLGLPYLTPERALAT--------LSGGEQERTALAKHLGAE 494 (1809)
T ss_pred HhcCCHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-HHHHhccccCCCCCCchhh--------CCHHHHHHHHHHHHHhcC
Confidence 34678888888876553100000 11222333 34567899876 6788777 999999999999999999
Q ss_pred C--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec------CCceEEecChHHHH
Q psy2519 190 P--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA------DSRTAFIGSKDAAL 261 (622)
Q Consensus 190 P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~------~G~iv~~G~~~~~~ 261 (622)
| ++++|||||+|||+.++..+.++|+++++ .|.|||+|+|++ + +.+.||++++|. +|++++.|+++++.
T Consensus 495 p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~-~G~TVIvVeHd~-~-vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil 571 (1809)
T PRK00635 495 LIGITYILDEPSIGLHPQDTHKLINVIKKLRD-QGNTVLLVEHDE-Q-MISLADRIIDIGPGAGIFGGEVLFNGSPREFL 571 (1809)
T ss_pred CCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-H-HHHhCCEEEEEcCCcccCCCEEEEecCHHHHh
Confidence 9 89999999999999999999999999987 699999999996 3 678999999996 78999999988763
|
|
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.69 E-value=1e-16 Score=165.76 Aligned_cols=76 Identities=30% Similarity=0.466 Sum_probs=68.5
Q ss_pred ccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 171 VLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||+++|++++. +|+++++||||++||+.....+.+.++++++ +.|+|++||++ .+.+.+|+++.+
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~--~~tii~isH~~--~~~~~~d~~~~l 245 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSR--SHQVLCITHLP--QVAAMADNHFLV 245 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC--CCEEEEEechH--HHHHhcCcEEEE
Confidence 399999999999997664 9999999999999999999999999999864 68999999997 356899999999
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
.+|+
T Consensus 246 ~~~~ 249 (276)
T cd03241 246 EKEV 249 (276)
T ss_pred EEec
Confidence 8764
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.9e-17 Score=162.57 Aligned_cols=154 Identities=21% Similarity=0.176 Sum_probs=108.5
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEE-EEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACG-FMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~ig-yV~Q 109 (622)
...+..++++.. .+++.+++.|+| |+||||||++++-. .+..++| |||.
T Consensus 16 ~~~v~~~~~~~~-----~~~~~~~l~G~n-----~~GKstll~~i~~~--------------------~~la~~g~~vpa 65 (222)
T cd03285 16 VAFIPNDVTLTR-----GKSRFLIITGPN-----MGGKSTYIRQIGVI--------------------VLMAQIGCFVPC 65 (222)
T ss_pred CCeEEeeEEEee-----cCCeEEEEECCC-----CCChHHHHHHHHHH--------------------HHHHHhCCCcCc
Confidence 345677777776 234444555555 89999999999811 1112333 5555
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH--h
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL--L 187 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL--~ 187 (622)
+...++ .++++++.+++.+.. .. ++|.||++++.+++++ +
T Consensus 66 ~~~~~~---------------------------~~~~il~~~~l~d~~---~~--------~lS~~~~e~~~~a~il~~~ 107 (222)
T cd03285 66 DSADIP---------------------------IVDCILARVGASDSQ---LK--------GVSTFMAEMLETAAILKSA 107 (222)
T ss_pred ccEEEe---------------------------ccceeEeeeccccch---hc--------CcChHHHHHHHHHHHHHhC
Confidence 432221 123455566665432 22 3999999999999999 8
Q ss_pred hCCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 188 TDPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 188 ~~P~lLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
.+|+++||||| |++||+.+... ..++.+.++.|.++|++||+ .++.+++|++..+++|++...++
T Consensus 108 ~~~sLvLLDEp~~gT~~lD~~~~~~--~il~~l~~~~~~~vlisTH~--~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 108 TENSLIIIDELGRGTSTYDGFGLAW--AIAEYIATQIKCFCLFATHF--HELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred CCCeEEEEecCcCCCChHHHHHHHH--HHHHHHHhcCCCeEEEEech--HHHHHHhhcCCCeEEEEEEEEEe
Confidence 99999999999 99999988864 34455554358999999997 47889999999999999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.1e-16 Score=146.79 Aligned_cols=74 Identities=31% Similarity=0.423 Sum_probs=67.9
Q ss_pred cChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||+||+||+++|++|+. +|+++++|||++|+|+..+..+.+.+.+..++ |.++|++||++ ++.+.+|+++.|.
T Consensus 78 lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~-~~~vii~TH~~--~~~~~~d~~~~l~ 154 (162)
T cd03227 78 LSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVK-GAQVIVITHLP--ELAELADKLIHIK 154 (162)
T ss_pred ccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCEEEEEcCCH--HHHHhhhhEEEEE
Confidence 99999999999999997 78999999999999999999999999998874 89999999996 5567899999985
Q ss_pred C
Q psy2519 248 D 248 (622)
Q Consensus 248 ~ 248 (622)
.
T Consensus 155 ~ 155 (162)
T cd03227 155 K 155 (162)
T ss_pred E
Confidence 3
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.8e-15 Score=155.63 Aligned_cols=185 Identities=21% Similarity=0.273 Sum_probs=133.7
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----CceeeEEEECCEecCccccccEE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD-----CIIDGDIRVNGKPVEGKFRSACG 105 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~-----~~~~G~I~~~G~~~~~~~r~~ig 105 (622)
...+|+|+||.+ ++|+..++.|+ |||||||+|++|.|....- ..++|.|.+--.. ..+
T Consensus 395 eryvlr~vNL~i-----kpGdvvaVvGq-----SGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt-------~~a 457 (593)
T COG2401 395 ERYVLRNLNLEI-----KPGDVVAVVGQ-----SGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT-------VSA 457 (593)
T ss_pred eeeeeeceeeEe-----cCCCeEEEEec-----CCCCcchHHHHHHHHhhcccccccCCCCCceeccccc-------hhh
Confidence 456899999999 56666666655 5899999999999975421 0146777653221 223
Q ss_pred EEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc--CCccCCcCCCCccccChHHHHHHHH
Q psy2519 106 FMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 106 yV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
.+|-+. .-+..-|+.|++.-- .. + ...+.++|++.||.+.. .... ++ ||-|||.|+.|
T Consensus 458 ~iPge~Ep~f~~~tilehl~s~--tG-----D----~~~AveILnraGlsDAvlyRr~f-----~E---LStGQKeR~KL 518 (593)
T COG2401 458 LIPGEYEPEFGEVTILEHLRSK--TG-----D----LNAAVEILNRAGLSDAVLYRRKF-----SE---LSTGQKERAKL 518 (593)
T ss_pred ccCcccccccCchhHHHHHhhc--cC-----c----hhHHHHHHHhhccchhhhhhccH-----hh---cCcchHHHHHH
Confidence 445432 223345666654211 10 0 12245899999997643 2332 33 99999999999
Q ss_pred HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccceeeecCCceE
Q psy2519 183 ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLADSRTA 252 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v~~L~~G~iv 252 (622)
|..+..+|.+++.||=.+-||+.++..+.+-|.+++++.|.|++++||.| +.+-.+ -|+++++.=|+..
T Consensus 519 Akllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrp-Ev~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 519 AKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRP-EVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred HHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCH-HHHhccCCceeEEeeccccc
Confidence 99999999999999999999999999999999999998899999999997 455555 4888888766554
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=4e-16 Score=165.81 Aligned_cols=198 Identities=18% Similarity=0.184 Sum_probs=136.0
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+-+.++||-..-+.|++ +....++.+ ++|-...|.||| |||||+|.|+|+|+-+- ..|....
T Consensus 477 ~~~~gI~lenIpvItP~~~v-vv~~Ltf~i-----~~G~hLLItGPN-----GCGKSSLfRILggLWPv---y~g~L~~- 541 (728)
T KOG0064|consen 477 RNFNGIILENIPVITPAGDV-LVPKLTFQI-----EPGMHLLITGPN-----GCGKSSLFRILGGLWPV---YNGLLSI- 541 (728)
T ss_pred hcccceEEecCceeccCcce-eecceeEEe-----cCCceEEEECCC-----CccHHHHHHHHhccCcc---cCCeeec-
Confidence 33345778888888766765 567777777 678888888888 79999999999999874 2444432
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcC--CCccccHHHHHHHHHHHHHHhCCCcccCCccCC-cCCCCc
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK--LDRRVKAYQRIALINSLLIELGLMNSQHTRIGS-SSITQK 169 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~--~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~-~~~~~~ 169 (622)
..+.++-|+||.|.+- .-|.+|.+.++-... ..+...+ +....+|+.+.|++...+-.|= ..-...
T Consensus 542 ------P~~~~mFYIPQRPYms-~gtlRDQIIYPdS~e~~~~kg~~d----~dL~~iL~~v~L~~i~qr~~g~da~~dWk 610 (728)
T KOG0064|consen 542 ------PRPNNIFYIPQRPYMS-GGTLRDQIIYPDSSEQMKRKGYTD----QDLEAILDIVHLEHILQREGGWDAVRDWK 610 (728)
T ss_pred ------CCCcceEeccCCCccC-cCcccceeecCCcHHHHHhcCCCH----HHHHHHHHHhhHHHHHHhccChhhhccHH
Confidence 1245699999998765 558888887643110 0011122 2344566666665543332210 000112
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
--||||||||+++||..-++|+.-+|||-||+..+.....+.+..++ .|.+.+-+||.|+ .++.-..
T Consensus 611 d~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~----~gi~llsithrps--lwk~h~~ 677 (728)
T KOG0064|consen 611 DVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD----AGISLLSITHRPS--LWKYHTH 677 (728)
T ss_pred hhccchHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh----cCceEEEeecCcc--HHHHHHH
Confidence 23999999999999999999999999999999988777777666543 6999999999984 4554333
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.9e-14 Score=147.06 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=61.6
Q ss_pred cChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc--
Q psy2519 172 LSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-- 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~-- 240 (622)
+|+||||+++||++|+ .+|+++++||||++||+..+..+.+.++++. . +++++|+. ..+.+.|
T Consensus 184 lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~----q-~ii~~~~~-~~~~~~~~~ 257 (270)
T cd03242 184 GSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV----Q-TFVTTTDL-ADFDALWLR 257 (270)
T ss_pred CChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC----C-EEEEeCCc-hhccchhcc
Confidence 8999999999999986 6999999999999999999999999998752 3 45555543 3666676
Q ss_pred -cceeeecCCce
Q psy2519 241 -DKIILLADSRT 251 (622)
Q Consensus 241 -D~v~~L~~G~i 251 (622)
++++.+++|++
T Consensus 258 ~~~i~~l~~g~i 269 (270)
T cd03242 258 RAQIFRVDAGTL 269 (270)
T ss_pred CccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.4e-15 Score=144.89 Aligned_cols=84 Identities=17% Similarity=0.151 Sum_probs=70.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-HHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-MMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
++++++| ++.+.+++.+|+++++||||+|+|+.....+.. +++.+.+ .+.++|++||++ ++.+.+|++..++.|+
T Consensus 92 ~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~-~~~~vi~~tH~~--~~~~~~~~~~~l~~~~ 167 (202)
T cd03243 92 FMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE-KGCRTLFATHFH--ELADLPEQVPGVKNLH 167 (202)
T ss_pred HHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCeEEEECChH--HHHHHhhcCCCeEEEE
Confidence 7776665 666688889999999999999999999988765 5666665 689999999985 6677899999999999
Q ss_pred eEEecChHH
Q psy2519 251 TAFIGSKDA 259 (622)
Q Consensus 251 iv~~G~~~~ 259 (622)
+...+...+
T Consensus 168 ~~~~~~~~~ 176 (202)
T cd03243 168 MEELITTGG 176 (202)
T ss_pred EEEEecCCe
Confidence 998886543
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.6e-14 Score=146.45 Aligned_cols=184 Identities=22% Similarity=0.252 Sum_probs=137.1
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
.+.-+.+..|.+..|.-...+..+.+|.| |-||||++++++|+++|+ ..|+|-. -.++|=||.
T Consensus 348 m~k~~g~F~L~i~~GefsdSeiivmlgEn-----gtgkTTfi~mlag~~~pd--~~~e~p~----------lnVSykpqk 410 (592)
T KOG0063|consen 348 MKKTVGDFCLCIKVGEFSDSEIIVMLGEN-----GTGKTTFIRMLAGRLKPD--EGGEIPV----------LNVSYKPQK 410 (592)
T ss_pred ceeeeeeEEEEEeecccCCceeEEEEccC-----CcchhHHHHHHhcCCCCC--ccCcccc----------cceeccccc
Confidence 34456677777766665555566667666 799999999999999995 3455532 246677775
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
-.--..-||++.+.- +.+ +......-+.++++-|.+++..|+-+.+ |||||+|||++|..|=...
T Consensus 411 ispK~~~tvR~ll~~--kIr-----~ay~~pqF~~dvmkpL~ie~i~dqevq~--------lSggelQRval~KOGGKpA 475 (592)
T KOG0063|consen 411 ISPKREGTVRQLLHT--KIR-----DAYMHPQFVNDVMKPLQIENIIDQEVQG--------LSGGELQRVALALCLGKPA 475 (592)
T ss_pred cCccccchHHHHHHH--HhH-----hhhcCHHHHHhhhhhhhHHHHHhHHhhc--------CCchhhHHHHHHHhcCCCC
Confidence 433334588876533 222 1122234567888888888888887766 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 191 ~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
++.+.|||.+-||+..+..--+.++++--+.++|-.+|.||.. -.--++||+++..
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfI-maTYladrvivf~ 531 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFI-MATYLADRVIVFE 531 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHH-HHHhhcceeEEEe
Confidence 9999999999999999999999999986546899999999963 2334688887663
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=4.2e-15 Score=154.62 Aligned_cols=210 Identities=21% Similarity=0.235 Sum_probs=145.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC---CCCCceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV---IDDCIIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~---~~~~~~~G~I~~~ 92 (622)
--++++|.+.+- -+...+.+.||.+ ..|....++||| |-||||||+.|+.+. +|+ =.+++.
T Consensus 263 ~DIKiEnF~ISA--~Gk~LFvnA~L~I-----v~GRRYGLVGPN-----G~GKTTLLkHIa~RalaIPpn----IDvLlC 326 (807)
T KOG0066|consen 263 MDIKIENFDISA--QGKLLFVNASLTI-----VYGRRYGLVGPN-----GMGKTTLLKHIAARALAIPPN----IDVLLC 326 (807)
T ss_pred ccceeeeeeeec--ccceeeeccceEE-----EecceecccCCC-----CCchHHHHHHHHhhhccCCCC----CceEee
Confidence 345677777663 4455777888887 355567777777 799999999999875 342 234444
Q ss_pred CEecCc-----------cccccEEEEecCC-----CCCCCCCHHHHHHHH-HHcCCCccccHHHHHHHHHHHHHHhCCCc
Q psy2519 93 GKPVEG-----------KFRSACGFMYQHD-----LFSPSLTVYEHLYFM-ALLKLDRRVKAYQRIALINSLLIELGLMN 155 (622)
Q Consensus 93 G~~~~~-----------~~r~~igyV~Q~~-----~l~~~lTV~E~l~f~-~~l~~~~~~~~~~~~~~v~~~l~~lgL~~ 155 (622)
.+.+-. .-.++...+-.++ .--...|+.|-+.-. ..++.. .......+++++|.-+|...
T Consensus 327 EQEvvad~t~Ai~tvl~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELrai---GA~sAEarARRILAGLGFsk 403 (807)
T KOG0066|consen 327 EQEVVADSTSAIDTVLKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAI---GADSAEARARRILAGLGFSK 403 (807)
T ss_pred eeeeeecCcHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHh---ccccchhHHHHHHhhcCCCh
Confidence 443311 0011222222111 122456777776443 233321 12223456778999999976
Q ss_pred cc-CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 156 SQ-HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 156 ~~-~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
.. +++... +|||-|-||++||||..+|-+|.|||||+.||-.+..-+-+.|+.+. +|.++|+||- .
T Consensus 404 EMQ~rPt~k--------FSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk----KTLLIVSHDQ-g 470 (807)
T KOG0066|consen 404 EMQERPTTK--------FSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK----KTLLIVSHDQ-G 470 (807)
T ss_pred hHhcCCccc--------cCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh----heeEEEeccc-c
Confidence 54 454444 99999999999999999999999999999999999999999998875 4999999995 6
Q ss_pred HHHhhccceeeecCCceEE-ecCh
Q psy2519 235 ELIDMFDKIILLADSRTAF-IGSK 257 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~-~G~~ 257 (622)
.+-..|..|+-|++-++-| .|.-
T Consensus 471 FLD~VCtdIIHLD~qkLhyYrGNY 494 (807)
T KOG0066|consen 471 FLDSVCTDIIHLDNQKLHYYRGNY 494 (807)
T ss_pred hHHHHHHHHhhhhhhhhhhhcchH
Confidence 8889999999998877754 3443
|
|
| >TIGR01247 drrB daunorubicin resistance ABC transporter membrane protein | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.7e-12 Score=131.03 Aligned_cols=227 Identities=14% Similarity=0.230 Sum_probs=161.5
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCCC--hhhH----HHHHHHHHHHHHHHHHHhHHHHHhh-hhhhhh
Q psy2519 354 RSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLT--QRGV----QSVQGALFIMVTENTFSPMYSVLSQ-FPDMLP 426 (622)
Q Consensus 354 R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~--~~~~----~~~~g~lf~~~~~~~~~~~~~~~~~-f~~er~ 426 (622)
|+++..+|||.....-+++-+++.+++|.++-...+.+ ..+. +-..|.+.+.....+... +... ..+|+.
T Consensus 1 re~~~~~r~~~~~~~~l~~Pl~~~~~~~~~~~~~~~~~~~~~g~~y~~fl~~G~~~~~~~~~~~~~---~~~~~~~~~~g 77 (236)
T TIGR01247 1 RELKRFIRSRSRIVGSILNPLLWLIFFGKGWSGAFRFPMIFGGVDYMTYLVPGIVAMTVFNMSFFS---GISVIWDRQFG 77 (236)
T ss_pred CchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCcHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHhC
Confidence 67788899999888888888888888888875431111 1111 112333333332222221 1111 122333
Q ss_pred HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Q psy2519 427 LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSV 506 (622)
Q Consensus 427 v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~ 506 (622)
+++|=+. .-.+...|+++|.+.+++..++..+++..+.+++.+++. ..++.+++..++..++..++|.+++...++.
T Consensus 78 ~~~~~~~-~P~~~~~~~l~~~l~~~~~~~~~~~i~~~i~~~~~~~~~--~~~~~~~~~~~l~~~~~~~lg~~l~~~~~~~ 154 (236)
T TIGR01247 78 FLKEILV-APASRVEMIVGRILGGSTVAMIQGAIILALSFIVAILKP--SGVIPTLVLAFIVGVALSGLGVAIAARMDSM 154 (236)
T ss_pred HHHHHHh-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHhCCH
Confidence 3333332 233678999999999999999999999999988877553 3455555566666778899999999999999
Q ss_pred HHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcC
Q psy2519 507 STAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMN 586 (622)
Q Consensus 507 ~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~ 586 (622)
+.+..+.+.+..+++.+||.+.|.+.+|+|++|+.+++|.+|+.|++-....++..
T Consensus 155 ~~~~~i~~~~~~~l~~lsG~~~P~~~~P~~~~~i~~~~P~~~~~~~~r~~~~~~~~------------------------ 210 (236)
T TIGR01247 155 EGFQIIMSMLMLPMFFLSGAFYPITTMPAWMQGLAKINPLTYAVDGARYYLAGVSP------------------------ 210 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcCHHhCHHHHHHHHHHCcHHHHHHHHHHHHhCCCc------------------------
Confidence 99999999999999999999999999999999999999999999997653332110
Q ss_pred CCCCCchhhHHHHHHHHHHHHHHHHH
Q psy2519 587 FSPDNLYPNLIAMVVLYFAFHTLAFL 612 (622)
Q Consensus 587 ~~~~~~~~~~~il~~~~~~f~~l~~~ 612 (622)
..+.+.++++++++.+++..++..
T Consensus 211 --~~~~~~~~~~l~~~~~~~~~l~~~ 234 (236)
T TIGR01247 211 --TFPLEQDLLVLTLLAVIFVGIAAV 234 (236)
T ss_pred --ccchHHHHHHHHHHHHHHHHHHHH
Confidence 123566789999999988877754
|
This model describes daunorubicin resistance ABC transporter, membrane associated protein in bacteria and archaea. The protein associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.49 E-value=5.8e-14 Score=138.52 Aligned_cols=135 Identities=16% Similarity=0.186 Sum_probs=93.7
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEE-EEec
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACG-FMYQ 109 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~ig-yV~Q 109 (622)
+..+..+++++. ++++..++.|+| |+||||+++++++..- ..++| ||
T Consensus 15 ~~~v~~~~~~~~-----~~~~~~~l~G~n-----~~GKstll~~i~~~~~--------------------la~~G~~v-- 62 (204)
T cd03282 15 KNFIPNDIYLTR-----GSSRFHIITGPN-----MSGKSTYLKQIALLAI--------------------MAQIGCFV-- 62 (204)
T ss_pred CcEEEeeeEEee-----CCCcEEEEECCC-----CCCHHHHHHHHHHHHH--------------------HHHcCCCc--
Confidence 446778888887 344555666665 8999999999987642 11222 23
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+...+.+++.|++... ++..+..++..++ +|+|++|+ +.+.+++.+
T Consensus 63 -pa~~~~l~~~d~I~~~------------------------~~~~d~~~~~~S~--------fs~e~~~~-~~il~~~~~ 108 (204)
T cd03282 63 -PAEYATLPIFNRLLSR------------------------LSNDDSMERNLST--------FASEMSET-AYILDYADG 108 (204)
T ss_pred -chhhcCccChhheeEe------------------------cCCccccchhhhH--------HHHHHHHH-HHHHHhcCC
Confidence 3445566777766332 2222222333334 99999975 566778999
Q ss_pred CCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccC
Q psy2519 190 PALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
|+++++|||++|+|+.....+ .+.++.+.+ .|.++|++||+.
T Consensus 109 ~~lvllDE~~~gt~~~~~~~l~~~il~~l~~-~~~~~i~~TH~~ 151 (204)
T cd03282 109 DSLVLIDELGRGTSSADGFAISLAILECLIK-KESTVFFATHFR 151 (204)
T ss_pred CcEEEeccccCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 999999999999999887665 456777876 699999999985
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.1e-13 Score=141.85 Aligned_cols=139 Identities=17% Similarity=0.209 Sum_probs=95.2
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..++++|++ |||||||+++|+|.++| .+|+|.++|+++.. ++.+.+++++|++ +.+.++|.||..-
T Consensus 112 ~~~~i~g~~-----g~GKttl~~~l~~~~~~---~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~~k 182 (270)
T TIGR02858 112 LNTLIISPP-----QCGKTTLLRDLARILST---GISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGCPK 182 (270)
T ss_pred eEEEEEcCC-----CCCHHHHHHHHhCccCC---CCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccchH
Confidence 355666665 89999999999999998 48999999999852 3555677888854 4455566554110
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
.+ | .....+..+|+++++|||++
T Consensus 183 ------------~~-----------------------------------~-----~~~~i~~~~P~villDE~~~----- 205 (270)
T TIGR02858 183 ------------AE-----------------------------------G-----MMMLIRSMSPDVIVVDEIGR----- 205 (270)
T ss_pred ------------HH-----------------------------------H-----HHHHHHhCCCCEEEEeCCCc-----
Confidence 00 0 11222336899999999974
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcHH-H-----------HhhccceeeecCCceEEecChHHH
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSE-L-----------IDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~-i-----------~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
...+..+++.+ + .|.|+|+++|++..+ + ..+|||+++|++|+ ..|+++++
T Consensus 206 -~e~~~~l~~~~-~-~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i 267 (270)
T TIGR02858 206 -EEDVEALLEAL-H-AGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAV 267 (270)
T ss_pred -HHHHHHHHHHH-h-CCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeec
Confidence 33455555555 3 599999999985321 2 25689999999887 66666544
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >TIGR03062 pip_yhgE_Cterm YhgE/Pip C-terminal domain | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.7e-12 Score=126.04 Aligned_cols=152 Identities=17% Similarity=0.170 Sum_probs=124.5
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHhhhHHH
Q psy2519 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFSSVSTAMACLVPF 516 (622)
Q Consensus 437 Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~~~~~a~~~~~~~ 516 (622)
-+.+.++++|.+..++..++.+++...+.|++.|++.. .++.+++.+++..++..++|.++++.+++...+. ....
T Consensus 57 ~~~~~~~~~k~~~~~~~~~~~~~~~~~i~~~~~g~~~~--~~~~~~l~~~l~~~~~~~lg~~l~~~~~~~~~~~--~~~~ 132 (208)
T TIGR03062 57 ARSWRIALAKLLPGGLIGVLQAIILYGVLILGLGLDPA--HPPATFGFAILTSLTFMAIIQFLVALFGNVGRFL--ALVL 132 (208)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccC--CHHHHHHHHHHHHHHHHHHHHHHHHHhCcchHHH--HHHH
Confidence 35678899999999999999999999999999999864 4667777778888899999999999998765443 3345
Q ss_pred HHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCCchhhH
Q psy2519 517 DYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNL 596 (622)
Q Consensus 517 ~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~ 596 (622)
..++++++|.+.|.+.+|.|++|+.+++|++|+.+++....+++. ..+.|.++
T Consensus 133 ~~~~~~~sG~~~P~~~~P~~~~~i~~~~P~t~~~~~~r~~~~~~~---------------------------~~~~~~~~ 185 (208)
T TIGR03062 133 LVLQLGSSGGTFPIELLPAFFQAIHPFLPMTYSVNGLRQLISGGN---------------------------DGTLWQAV 185 (208)
T ss_pred HHHHHccCCCccchhhCHHHHHHhhhhCcHHHHHHHHHHHHhCCc---------------------------HHHHHHHH
Confidence 567777899889999999999999999999999999976655421 12357789
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 597 IAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 597 ~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
++++++.+++.++++..+|+++|
T Consensus 186 ~~L~~~~~v~~~la~~~~~~~~~ 208 (208)
T TIGR03062 186 AVLLLILVVFLALSLLSARRKRR 208 (208)
T ss_pred HHHHHHHHHHHHHHHHHHhhhcC
Confidence 99999999999888887776554
|
This family contains the C-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03061, represents the conserved N-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057. |
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.43 E-value=3.4e-13 Score=134.37 Aligned_cols=158 Identities=16% Similarity=0.056 Sum_probs=100.8
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
.+..+++++. .++..++.|+| |||||||||++++..-. |+ .|..+.. .+..++++.|
T Consensus 19 ~v~n~~~l~~------~~~~~~l~Gpn-----~sGKstllr~i~~~~~l-----~~---~g~~vp~-~~~~i~~~~~--- 75 (216)
T cd03284 19 FVPNDTELDP------ERQILLITGPN-----MAGKSTYLRQVALIALL-----AQ---IGSFVPA-SKAEIGVVDR--- 75 (216)
T ss_pred eEeeeEEecC------CceEEEEECCC-----CCChHHHHHHHHHHHHH-----hc---cCCeecc-ccceecceee---
Confidence 3566666665 22455666665 89999999999875432 11 1222221 1345777755
Q ss_pred CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCe
Q psy2519 113 FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192 (622)
Q Consensus 113 l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~l 192 (622)
+++.+++.|++..+... . ..|.++++-+...+.+|++
T Consensus 76 i~~~~~~~~~ls~g~s~------------------------------------------f-~~e~~~l~~~l~~~~~~~l 112 (216)
T cd03284 76 IFTRIGASDDLAGGRST------------------------------------------F-MVEMVETANILNNATERSL 112 (216)
T ss_pred EeccCCchhhhccCcch------------------------------------------H-HHHHHHHHHHHHhCCCCeE
Confidence 56777777766443100 0 0112222333333568999
Q ss_pred EEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 193 LLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 193 LlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
++|||| |+++|.... ...+++.+.++.+.|+|++||+. ++.+++|++..+.+|++...+..+++
T Consensus 113 lllDEp~~gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~--~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 113 VLLDEIGRGTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYH--ELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred EEEecCCCCCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcH--HHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999999 888887552 33455555553388999999994 77889999888889999887776654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR01291 nodJ ABC-2 type transporter, NodJ family | Back alignment and domain information |
|---|
Probab=99.39 E-value=1.3e-10 Score=118.75 Aligned_cols=236 Identities=11% Similarity=0.047 Sum_probs=160.2
Q ss_pred HHHHHHHHHHhhcC-hHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhH----HHHHHHHHHHHHHHHHHhHHHHH-hhhh
Q psy2519 349 YVLISRSFLNVVRD-PAIQLSKLFQKVATALMCGLCFAGSIDLTQRGV----QSVQGALFIMVTENTFSPMYSVL-SQFP 422 (622)
Q Consensus 349 ~~L~~R~~~~~~Rd-~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~----~~~~g~lf~~~~~~~~~~~~~~~-~~f~ 422 (622)
..+.+|+++..+|+ |......+++-++.-+++|..+-...+ +..+. +-..|.+-+.+++.++ .+.. ..+.
T Consensus 8 ~~~~~R~~~~~~r~~~~~~~~~~~~P~~~l~~fg~~~~~~~~-~~~g~~y~~f~~pg~l~~~~~~~~~---~~~~~~~~~ 83 (253)
T TIGR01291 8 AAVWRRNALAWKKVAAASVLGNLADPLIYLFGLGVGLGKMVG-SVDGVSYAAFLAAGMVATSAMTAST---FETIYATFA 83 (253)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccCCCCHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Confidence 45669999999999 988888888888888888888754311 11111 1111222222222111 1111 1112
Q ss_pred h--hhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 423 D--MLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 423 ~--er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+ |+..++|=+..-. ++..++++|.+.+.-..++..++...+.++ .|..+. ...+..+.++++..++..++|.+++
T Consensus 84 ~~r~~g~~~~l~~~Pv-~~~~~~~g~~~~~~~~~~~~~~ii~~~~~~-~g~~~~-~~~l~~~~~~ll~~l~~~~lg~~~a 160 (253)
T TIGR01291 84 RMRVTRTWEAMLYTPI-TVGDIVLGEVAWAATKASLAGTIIGVVTAT-LGYIEW-WSLIYILPVIALTGLAFASLSMLVA 160 (253)
T ss_pred HHHHcccHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhhchh-hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 2233333333333 788999999999877777766665555443 444433 2344444455566777789999999
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHH
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQ 580 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~ 580 (622)
...++.+.+..+.+.+..|++.+||.+.|.+.+|.|++|+.+++|+.|+.|++-...+++ .
T Consensus 161 ~~~~~~~~~~~i~~~i~~pl~flSg~~~P~~~mP~~lq~i~~~nPlt~~v~~~R~~~~g~-~------------------ 221 (253)
T TIGR01291 161 ALAPSYAYFAFYQSLVITPMLFLSGVVFPVFQLNDVIQGMTHFLPLAHSIDDIRPVMLGG-P------------------ 221 (253)
T ss_pred HHhccHHHHHHHHHHHHHHHHHHHHHhcCHHhChHHHHHHHHHCcHHHHHHHHHHHHhCC-C------------------
Confidence 999999999999999999999999999999999999999999999999999975543321 0
Q ss_pred HHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhc
Q psy2519 581 VINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKS 618 (622)
Q Consensus 581 ~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~ 618 (622)
..+.+.++++++++.+++..++...+|++.
T Consensus 222 --------~~~~~~~~~~l~~~~vv~~~la~~~fr~~~ 251 (253)
T TIGR01291 222 --------GTQVGLHLGALCLYAVVPFFISAALLRRRL 251 (253)
T ss_pred --------cHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 012456788899999988888887777654
|
Nearly all members of this subfamily are NodJ which, together with NodI (TIGR01288), acts to export a variety of modified carbohydrate molecules as signals to plant hosts to establish root nodules. The seed alignment includes a highly divergent member from Azorhizobium caulinodans that is, nonetheless, associated with nodulation. This model is designated as subfamily in part because not all sequences derived from the last common ancestral sequence of Rhizobium sp. and Azorhizobium caulinodans NodJ are necessarily nodulation proteins. |
| >TIGR00025 Mtu_efflux ABC transporter efflux protein, DrrB family | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-10 Score=117.11 Aligned_cols=222 Identities=15% Similarity=0.190 Sum_probs=142.6
Q ss_pred hcChHHHHHHHHHHHHHHHHHHHHhhcCCCCChhhHHH-HHHHHHHHHHHHHHHhHHHHHhhhhhhh--hHHHHHhcCCC
Q psy2519 360 VRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQS-VQGALFIMVTENTFSPMYSVLSQFPDML--PLFHREYSSGL 436 (622)
Q Consensus 360 ~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~-~~g~lf~~~~~~~~~~~~~~~~~f~~er--~v~~rE~~~g~ 436 (622)
+|||.....-+.+-+++-++++.+|-+. . +.+..+. ..|.+-+..++.+.. ..-.....|| ..++|=+..-.
T Consensus 2 ~r~p~~~~~~~~~p~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~i~~er~~G~l~rl~~~P~ 76 (232)
T TIGR00025 2 LRVGAQIILTMFIPITFMVGLNLLPGGS-V-THNRGATFIPVLMALAAISTAFT---GQAIAVARDRRYGALKRLGATPL 76 (232)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhcCCc-c-CCcchhHhhHHHHHHHHHHHHHH---HHHHHHHHHHHhCHHHHHhcCCC
Confidence 6899988777777777666666666432 1 1111211 223222222222211 1112223333 35555555543
Q ss_pred cChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---CHHHHHhhh
Q psy2519 437 YSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFSLAFS---SVSTAMACL 513 (622)
Q Consensus 437 Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~~~~---~~~~a~~~~ 513 (622)
++..|+++|.+...+..++..+++. +++++.|++.....+ ..++.+.+....+.+++.+++++.+ +.+.+..+.
T Consensus 77 -~~~~~l~g~~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~-~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~ 153 (232)
T TIGR00025 77 -PRLGILAGRSLAVVARVFLQTLILL-VIGFVLGFRFAGGAL-TALTLGAVIIALGTALFAALGLVAGGTLQAEIVLAVA 153 (232)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhccCcCCchH-HHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence 7899999999988888776655554 556677887653322 3333444455566677777777764 445557788
Q ss_pred HHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHHhhcCCCCCCch
Q psy2519 514 VPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVINNMNFSPDNLY 593 (622)
Q Consensus 514 ~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~ 593 (622)
+.+..+++++||.+.|.+.+|.|++|+.+++|++|+.+++-..-..+. +....|
T Consensus 154 ~~~~~p~~~lSG~~~P~~~mP~~lq~i~~~~P~t~~~~~~r~~~~~~~--------------------------~~~~~~ 207 (232)
T TIGR00025 154 NLVWFIFALLSAGLVPLNLIPTWIKWFVRVQPSSYATEALRQAATVSV--------------------------DTFGAV 207 (232)
T ss_pred HHHHHHHHHHhheeeecccccHHHHHHHHhCcHHHHHHHHHHHHcCCC--------------------------ChhhHH
Confidence 888999999999999999999999999999999999998854322211 112356
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH
Q psy2519 594 PNLIAMVVLYFAFHTLAFLFLL 615 (622)
Q Consensus 594 ~~~~il~~~~~~f~~l~~~~L~ 615 (622)
.++++++++.+++..++...++
T Consensus 208 ~~~~~l~~~~~v~~~la~~~~~ 229 (232)
T TIGR00025 208 RDLVVVLAFWVALAALAAIRLR 229 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 7788888888888777766554
|
This model represents a branch of a larger superfamily that also includes NodJ, a part of the NodIJ pair of nodulation-triggering signal efflux proteins. The members of this branch may all act in antibiotic resistance. |
| >TIGR03861 phenyl_ABC_PedC alcohol ABC transporter, permease protein | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-10 Score=115.32 Aligned_cols=237 Identities=16% Similarity=0.162 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhcCCCC------Ch---hhHHHHHHHHHHHHHHHHHHhHH
Q psy2519 345 FTIIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDL------TQ---RGVQSVQGALFIMVTENTFSPMY 415 (622)
Q Consensus 345 ~~Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~~~~~------~~---~~~~~~~g~lf~~~~~~~~~~~~ 415 (622)
++++..+++|+++...|||..+..-+++-+++-+++|.+|-...+. +. -...-..|.+-+.+.+.++..
T Consensus 1 ~~~~~~l~~rel~~~~r~~~~~~~~ll~Pl~~l~~f~~~f~~~~~~~~~~~~~~~~~y~~fl~pGi~~~~~~~~~~~~-- 78 (253)
T TIGR03861 1 LICFNGIVLREALRFVQQRSRFLSALVRPLLWLLVFAAGFRAALGISIIEPYDTYITYEVYIVPGLCCMILLFNGMQS-- 78 (253)
T ss_pred ChHHHHHHHHHHHHHHHhhHHHHHHHHhHHHHHHHHHHHHHhhccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHh--
Confidence 3688999999999999999999988999999999999988542111 00 011223333333332222221
Q ss_pred HHHh-hhhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHH
Q psy2519 416 SVLS-QFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATS 494 (622)
Q Consensus 416 ~~~~-~f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s 494 (622)
+.. ...+|+..+++=+... -+...+.+++++...-..++..++...+.+. .|.+.+...++.....+++..+...+
T Consensus 79 -~~~~~~~r~~g~~~~l~~~p-~~~~~~~l~~~l~~~~~~~~~~~i~~~~~~~-~g~~~~~~~~l~~~~~~~l~~~~~~~ 155 (253)
T TIGR03861 79 -SLSMVYDREMGSMRVLLTSP-LPRPFLLFCKLLASALISLLQVYAFLAIAAL-VGVQPPVWGYVSVLPALVLVAFMLGA 155 (253)
T ss_pred -hhHhHHhHhcCHHHHHhhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 111 1223333444444444 3788899999999988777776655555443 36655544444444455556677889
Q ss_pred HHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCC---CccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCC
Q psy2519 495 CGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSL---PPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPD 571 (622)
Q Consensus 495 ~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~i---p~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~ 571 (622)
+|++++.++++.+.+..+.+.+..+++..+|.+.+.+.+ |.|++|+.+++|+.|..|++-.. +.|.
T Consensus 156 lgl~la~l~~~~~~~~~i~~~~~~~l~flSgi~~p~~~~~~~p~~l~~i~~~nPl~~~i~~~R~~-~~g~---------- 224 (253)
T TIGR03861 156 LGLALSNLIRQLENFAGVMNFVIFPMFFLSSALYPLWKMQEASTWLYWICALNPFTHAVELVRFA-LYGQ---------- 224 (253)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhhHhhhhhhcccccHHHHHHHHhCcHHHHHHHHHHH-HhCC----------
Confidence 999999999999888888889999999999999888665 88999999999999999988542 2110
Q ss_pred CCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 572 LPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 572 ~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.-|..+.++.++.+++..++....|+
T Consensus 225 -------------------~~~~~~~~~~~~~~v~~~~~~~~fr~ 250 (253)
T TIGR03861 225 -------------------LNLPALGWTLGATTLFTLLAFWGFDP 250 (253)
T ss_pred -------------------cchhHHHHHHHHHHHHHHHHHHHhhc
Confidence 01445677777777777777666544
|
Members of this protein family, part of a larger class of efflux-type ABC transport permease proteins, are found exclusively in genomic contexts with pyrroloquinoline-quinone (PQQ) biosynthesis enzymes and/or PQQ-dependent alcohol dehydrogenases, such as the phenylethanol dehydrogenase PedE of Pseudomonas putida U. Members include PedC, an apparent phenylethanol transport protein whose suggested role is efflux to limit intracellular concentrations of toxic metabolites during phenylethanol catalysis. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.36 E-value=8.4e-13 Score=128.47 Aligned_cols=80 Identities=15% Similarity=0.144 Sum_probs=58.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+|++|...+.. .+.+|+++++|||++|+|+.....+. .+++.+.++.+.++|++||++ ++.+.+|+---+.+++
T Consensus 62 fs~~~~~l~~~l~-~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~--~l~~~~~~~~~v~~~~ 138 (185)
T smart00534 62 FMVEMKETANILK-NATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYH--ELTKLADEHPGVRNLH 138 (185)
T ss_pred HHHHHHHHHHHHH-hCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHH--HHHHHhhcCccceEEE
Confidence 8888887433332 23599999999999999999888864 566777653489999999995 6778887644444555
Q ss_pred eEEe
Q psy2519 251 TAFI 254 (622)
Q Consensus 251 iv~~ 254 (622)
....
T Consensus 139 ~~~~ 142 (185)
T smart00534 139 MSAD 142 (185)
T ss_pred EEEE
Confidence 5443
|
|
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-12 Score=144.93 Aligned_cols=77 Identities=25% Similarity=0.419 Sum_probs=69.9
Q ss_pred cccChHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.+||||+||++||++++.. |+++++||||+|||+.++..+.+.|+++++ ++|||++||+| .+...||++++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~--~~~vi~iTH~~--~~~~~ad~~~~ 514 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSE--RHQVLCVTHLP--QVAAHADAHFK 514 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEEChH--HHHHhcCeEEE
Confidence 46899999999999999985 699999999999999999999999999974 79999999997 44568999999
Q ss_pred ecCCc
Q psy2519 246 LADSR 250 (622)
Q Consensus 246 L~~G~ 250 (622)
+++|.
T Consensus 515 l~k~~ 519 (563)
T TIGR00634 515 VEKEG 519 (563)
T ss_pred EEEcc
Confidence 98764
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=6.4e-12 Score=141.48 Aligned_cols=77 Identities=25% Similarity=0.477 Sum_probs=69.8
Q ss_pred cccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+.+||||+||++||++++. +|+++++|||++|||+.++..+.+.|+++++ +.+||++||+| .+...+|+.+.
T Consensus 429 k~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~--~~qvi~iTH~~--~~~~~ad~~~~ 504 (553)
T PRK10869 429 KVASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGE--STQVMCVTHLP--QVAGCGHQHFF 504 (553)
T ss_pred hhCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhc--CCEEEEEecCH--HHHHhCCEEEE
Confidence 4589999999999999997 5899999999999999999999999999974 68999999997 45689999999
Q ss_pred ecCCc
Q psy2519 246 LADSR 250 (622)
Q Consensus 246 L~~G~ 250 (622)
+.++.
T Consensus 505 v~k~~ 509 (553)
T PRK10869 505 VSKET 509 (553)
T ss_pred Eeccc
Confidence 98753
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.28 E-value=9e-12 Score=150.93 Aligned_cols=77 Identities=23% Similarity=0.217 Sum_probs=71.6
Q ss_pred ccChHHHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 171 VLSGGERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
.|||||++||+||++|+. +|++||+||||+|||+.+...+++.|+++++ .|++|++|||++ .....++
T Consensus 950 ~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~-~g~~i~iisH~~-~~~~~~~ 1027 (1042)
T TIGR00618 950 TLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIRE-GSKMIGIISHVP-EFRERIP 1027 (1042)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCcH-HHHHhhC
Confidence 399999999999999986 7999999999999999999999999999987 799999999996 6788999
Q ss_pred cceeeecCC
Q psy2519 241 DKIILLADS 249 (622)
Q Consensus 241 D~v~~L~~G 249 (622)
|+|.|++.|
T Consensus 1028 ~~i~v~~~~ 1036 (1042)
T TIGR00618 1028 HRILVKKTN 1036 (1042)
T ss_pred CEEEEEECC
Confidence 999999753
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.27 E-value=5.5e-11 Score=133.20 Aligned_cols=136 Identities=26% Similarity=0.418 Sum_probs=106.2
Q ss_pred CCCCCHHHHHHHHHHcCCCccccHHHHHHHHH------HHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVKAYQRIALIN------SLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~------~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..|++.|.+.|...+.+... ...-....+. ..|..+||.-. .++..++ |||||.||+-+|..|
T Consensus 426 ~~~msi~~~~~f~~~l~l~~~-~~~ia~~ilkei~~RL~fL~~VGL~YLtL~R~a~T--------LSGGEaQRIRLAtqi 496 (935)
T COG0178 426 ISEMSIADALEFFENLKLSEK-EKKIAEPILKEIKERLGFLVDVGLGYLTLSRSAGT--------LSGGEAQRIRLATQI 496 (935)
T ss_pred HhhccHHHHHHHHHhCCCchh-hHHHHHHHHHHHHHHHHHHHHcCcCcccccccCCC--------cChhHHHHHHHHHHh
Confidence 356788888888877654221 1111111111 34556688643 4666666 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
=.+= =+++||||+-||.+..-..+++.|++|.+ .|-|+|+|.||+ +....+|+|+=+ +.|+|++.|+++
T Consensus 497 GS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRD-lGNTviVVEHDe--dti~~AD~iIDiGPgAG~~GGeIv~~Gtp~ 573 (935)
T COG0178 497 GSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRD-LGNTVIVVEHDE--DTIRAADHIIDIGPGAGEHGGEIVAEGTPE 573 (935)
T ss_pred cccceeeEEEecCCccCCChhhHHHHHHHHHHHHh-cCCeEEEEecCH--HHHhhcCEEEeeCCCCCcCCCEEEEccCHH
Confidence 8763 36799999999999999999999999998 799999999995 677899999998 568999999999
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
+++
T Consensus 574 ~i~ 576 (935)
T COG0178 574 ELL 576 (935)
T ss_pred HHH
Confidence 987
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.6e-12 Score=141.79 Aligned_cols=77 Identities=25% Similarity=0.378 Sum_probs=68.2
Q ss_pred cccChHHHHHHHHHHHHh----------hCCCeEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 170 VVLSGGERKRLSFATELL----------TDPALLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~----------~~P~lLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
..||||||||++||++|+ .+|+++|||||| ++||+..+..+.+.|+++ + |.|||++||++ ....
T Consensus 467 ~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~--~~~iiiish~~--~~~~ 541 (562)
T PHA02562 467 ASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-K--DTNVFVISHKD--HDPQ 541 (562)
T ss_pred hhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-C--CCeEEEEECch--hchh
Confidence 449999999999999987 599999999998 789999999999999998 3 78999999996 4557
Q ss_pred hccceeeecC-Cce
Q psy2519 239 MFDKIILLAD-SRT 251 (622)
Q Consensus 239 ~~D~v~~L~~-G~i 251 (622)
.+|++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 8999999985 654
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.8e-11 Score=142.37 Aligned_cols=59 Identities=29% Similarity=0.365 Sum_probs=54.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|+||++++.|++.+ .+|+++|+|||++|+||.....+ ..+++.+++ .|.++|++||+.
T Consensus 386 fS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~-~g~~viitTH~~ 445 (771)
T TIGR01069 386 FSGHMKNISAILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLK-QNAQVLITTHYK 445 (771)
T ss_pred HHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh-cCCEEEEECChH
Confidence 999999999998877 89999999999999999999999 578888876 799999999985
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.2e-11 Score=121.10 Aligned_cols=45 Identities=20% Similarity=0.285 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCC-----CCCCHHHHHHHHHHHHHHHh
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPT-----TGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPT-----sgLD~~~~~~i~~~l~~l~~ 219 (622)
-|++++.||++++.+|+++++|||| +|||+..+.++.+.++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~~ 205 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAAN 205 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHhh
Confidence 3999999999999999999999999 99999999999999999975
|
|
| >KOG0063|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.4e-11 Score=127.02 Aligned_cols=97 Identities=25% Similarity=0.254 Sum_probs=87.0
Q ss_pred HHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 141 ~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
++..+++++.+.|.+..++-+.. |||||-||.+||++-+.+.++.++|||.+-||...+..-...|+.+..
T Consensus 191 r~~~~~~~~~~~L~~~~~re~~~--------lsggelqrfaia~~~vq~advyMFDEpSsYLDVKQRLkaA~~IRsl~~- 261 (592)
T KOG0063|consen 191 RDNKEEVCDQLDLNNLLDREVEQ--------LSGGELQRFAIAMVCVQKADVYMFDEPSSYLDVKQRLKAAITIRSLIN- 261 (592)
T ss_pred cccHHHHHHHHHHhhHHHhhhhh--------cccchhhhhhhhhhhhhhcceeEecCCcccchHHHhhhHHHHHHHhhC-
Confidence 44567889999999988888777 999999999999999999999999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
...=||+|.||. +..--+.|-+..|.
T Consensus 262 p~~YiIVVEHDL-sVLDylSDFiCcLY 287 (592)
T KOG0063|consen 262 PDRYIIVVEHDL-SVLDYLSDFICCLY 287 (592)
T ss_pred CCCeEEEEEeec-hHHHhhhcceeEEe
Confidence 688999999997 46666688888885
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.8e-10 Score=114.58 Aligned_cols=58 Identities=26% Similarity=0.256 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhc--CCCEEEEEeccC
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQ--RKKTVLCTIHQP 232 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~--~g~tvi~~tH~~ 232 (622)
-|-||++++++++.+|+++++|||++|+|+.....+ .+.++++.++ .+.++|++||++
T Consensus 94 ~el~~l~~~l~~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~ 154 (213)
T cd03281 94 IDLYQVSKALRLATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFH 154 (213)
T ss_pred HHHHHHHHHHHhCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChH
Confidence 456899999999999999999999999999875555 5788888763 135899999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK15066 inner membrane transport permease; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.3e-08 Score=104.12 Aligned_cols=243 Identities=17% Similarity=0.199 Sum_probs=152.1
Q ss_pred hHHHHHHHHHHHHHHhhcChHH-HHHHHHHHHHHHHHHHHHhhcCCCC-C-h-hhHHHHHHHHHHHHHHHHHHhHHHHHh
Q psy2519 344 WFTIIYVLISRSFLNVVRDPAI-QLSKLFQKVATALMCGLCFAGSIDL-T-Q-RGVQSVQGALFIMVTENTFSPMYSVLS 419 (622)
Q Consensus 344 ~~~Q~~~L~~R~~~~~~Rd~~~-~~~r~~~~~~~~l~~G~~f~~~~~~-~-~-~~~~~~~g~lf~~~~~~~~~~~~~~~~ 419 (622)
.++-++.+.+|+++...||+.. +..-+++.++..+++|.++-...+. . . --..-..|.+-+.....+... +..
T Consensus 6 ~~~~~~~l~~re~~~~~r~~~~~ll~pli~~~~~~~vfg~~~~~~~~~~~~~~y~~fl~pGll~~~~~~~~~~~---~~~ 82 (257)
T PRK15066 6 YWIALKTIVRKEIRRFLRIWVQTLVPPVITMTLYFLIFGNLIGSRIGEMGGFSYMQFIVPGLIMMSVITNSYSN---VAS 82 (257)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhccccCCCCCCcHHHHHHHHHHHHHHHHHHHHH---HHH
Confidence 4677889999999999999854 3444445555666666655221011 0 0 011122233333322222221 112
Q ss_pred hhhhhh--hHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 420 QFPDML--PLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGI 497 (622)
Q Consensus 420 ~f~~er--~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~ 497 (622)
.+.+++ ...+|=+.. --++..+.+++++...-..++..++..++.+...|.+.. ....++..+++...+....|.
T Consensus 83 ~i~~~~~~~~~~~l~vt-p~~~~~~~~~~il~~~~~~~~~~~iil~i~~~~~~~~~~--~~~~~l~~~ll~~~~f~~~gl 159 (257)
T PRK15066 83 SFFSAKFQRNIEELLVS-PVPNHVIILGYVGGGVARGLCVGILVTLISLFFVPLQVH--HWGIVLLTVLLTAILFSLGGL 159 (257)
T ss_pred HHHHHHHhhhHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHh--HHHHHHHHHHHHHHHHHHHHH
Confidence 222332 111111122 347788999999988776666665555555544466543 222233333333333334588
Q ss_pred HHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccC
Q psy2519 498 MFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLED 577 (622)
Q Consensus 498 ~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~ 577 (622)
+++.+.++.+....+.+.+..+++..||.+.|.+++|.|++|+.+++|+.|..|++-..-+ |.
T Consensus 160 ~~a~~~~~~~~~~~i~~~~~~pl~flSgi~~p~~~lP~~l~~i~~~nPlt~~v~~~R~~~~-g~---------------- 222 (257)
T PRK15066 160 INAVFAKSFDDISIIPTFVLTPLTYLGGVFYSISLLPPFWQGVSKLNPIVYMVNAFRYGFL-GI---------------- 222 (257)
T ss_pred HHHHHHccHHHHHHHHHHHHHHHHHHcchhccHHhChHHHHHHHHHCcHHHHHHHHHHHHc-CC----------------
Confidence 8888888888888888999999999999999999999999999999999999999864322 11
Q ss_pred hHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 578 GAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 578 g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
...+.|.++++++++.+++..++...++++++
T Consensus 223 ----------~~~~~~~~l~~l~~~~~v~~~la~~~~~r~~~ 254 (257)
T PRK15066 223 ----------SDVPLWLAFAVLLVFIVVLYLLAWYLLERGRG 254 (257)
T ss_pred ----------CCccHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 11234678899999999998888888776544
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.8e-11 Score=122.14 Aligned_cols=72 Identities=31% Similarity=0.517 Sum_probs=57.2
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+|||||.+++||.-|+ ...++++||||.++||...+..+.++|+++.+ +.-+|++||++ ..++.+|+.+-+.
T Consensus 137 lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~--~~Q~ii~Th~~--~~~~~a~~~~~v~ 212 (220)
T PF02463_consen 137 LSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSK--QSQFIITTHNP--EMFEDADKLIGVT 212 (220)
T ss_dssp S-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTT--TSEEEEE-S-H--HHHTT-SEEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccc--ccccccccccc--ccccccccccccc
Confidence 9999999999997664 46789999999999999999999999999874 47899999985 7888999887763
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.12 E-value=4.7e-11 Score=144.17 Aligned_cols=75 Identities=25% Similarity=0.168 Sum_probs=67.1
Q ss_pred cChHHHHHHHHHHHHhh--------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 172 LSGGERKRLSFATELLT--------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~--------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
|||||+++++||++|+. +|++||+||||++||+.+...+++.|.++++ .|+||++|||.. ....++..+|
T Consensus 950 LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~-~g~~v~iisH~~-~l~~~i~~qi 1027 (1047)
T PRK10246 950 LSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNA-SGKTIGVISHVE-AMKERIPVQI 1027 (1047)
T ss_pred CCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHH-CCCEEEEEecHH-HHHHhccceE
Confidence 99999999999999996 8999999999999999999999999999987 699999999984 4555666777
Q ss_pred eeecC
Q psy2519 244 ILLAD 248 (622)
Q Consensus 244 ~~L~~ 248 (622)
.|-..
T Consensus 1028 ~V~k~ 1032 (1047)
T PRK10246 1028 KVKKI 1032 (1047)
T ss_pred EEEEC
Confidence 77654
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=1.4e-10 Score=138.83 Aligned_cols=75 Identities=36% Similarity=0.473 Sum_probs=66.6
Q ss_pred cccChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 170 VVLSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 170 ~gLSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
..|||||++ |+++|++++.+|+++++||||+|||+..+..+.+.|..+++ .+.|||++||++ ++...||++
T Consensus 787 ~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~-~~~~iiiith~~--~~~~~~d~~ 863 (880)
T PRK03918 787 TFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLR-KIPQVIIVSHDE--ELKDAADYV 863 (880)
T ss_pred hhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHh-cCCEEEEEECCH--HHHHhCCeE
Confidence 349999999 55556678899999999999999999999999999999876 578999999996 467899999
Q ss_pred eeec
Q psy2519 244 ILLA 247 (622)
Q Consensus 244 ~~L~ 247 (622)
++|.
T Consensus 864 ~~l~ 867 (880)
T PRK03918 864 IRVS 867 (880)
T ss_pred EEEE
Confidence 9997
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=7.8e-10 Score=132.54 Aligned_cols=77 Identities=30% Similarity=0.369 Sum_probs=66.0
Q ss_pred ccccChHHHHHHHH------HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-C-CEEEEEeccCcHHHHhhc
Q psy2519 169 KVVLSGGERKRLSF------ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-K-KTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 169 ~~gLSgGqrqRvsI------A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g-~tvi~~tH~~~~~i~~~~ 240 (622)
+..||||||+|++| |++++.+|++++|||||++||+..+..+.++++...++. | .|+|++||++ +....|
T Consensus 799 ~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~--~~~~~~ 876 (895)
T PRK01156 799 IDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHR--ELLSVA 876 (895)
T ss_pred cccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECch--HHHHhc
Confidence 34599999999975 589999999999999999999999999999998754433 3 4899999996 455799
Q ss_pred cceeeec
Q psy2519 241 DKIILLA 247 (622)
Q Consensus 241 D~v~~L~ 247 (622)
|+++.+.
T Consensus 877 d~ii~~~ 883 (895)
T PRK01156 877 DVAYEVK 883 (895)
T ss_pred CeEEEEE
Confidence 9999997
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=139.77 Aligned_cols=68 Identities=26% Similarity=0.332 Sum_probs=61.4
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cCCCEEEEEeccCcHHHHhhc
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS----QRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~----~~g~tvi~~tH~~~~~i~~~~ 240 (622)
||||||| |++||++++.+|++|+|||||+|||+.+...+.+.|.++.. ..|.|||++||++ ..+..+|
T Consensus 1200 lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~-~~~~~~~ 1277 (1311)
T TIGR00606 1200 CSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDE-DFVELLG 1277 (1311)
T ss_pred CchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCH-HHHHHHh
Confidence 9999999 99999999999999999999999999999999999988742 2478999999996 6777665
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.04 E-value=3.6e-10 Score=131.89 Aligned_cols=79 Identities=19% Similarity=0.244 Sum_probs=63.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|+||+|++.|++++ .+|+++|+|||++|+||.....+. .++..+.+ .|.++|++||++ +.....+|+..+. ++.
T Consensus 391 fS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~-~~~~vIitTH~~-el~~~~~~~~~v~-~~~ 466 (782)
T PRK00409 391 FSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRK-RGAKIIATTHYK-ELKALMYNREGVE-NAS 466 (782)
T ss_pred HHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHH-CCCEEEEECChH-HHHHHHhcCCCeE-EEE
Confidence 999999999999998 899999999999999999999886 46777776 689999999995 3444445555444 455
Q ss_pred eEEe
Q psy2519 251 TAFI 254 (622)
Q Consensus 251 iv~~ 254 (622)
+.++
T Consensus 467 ~~~d 470 (782)
T PRK00409 467 VEFD 470 (782)
T ss_pred EEEe
Confidence 6553
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.5e-10 Score=108.81 Aligned_cols=76 Identities=18% Similarity=0.259 Sum_probs=63.2
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+||+++-+..+++..+.+|+++++||| +.++| ....+.+.++.+ .|.++|+++|+. .+...+|++..+.+|
T Consensus 79 lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~----~~~~~~l~~~~~-~~~~~i~v~h~~--~~~~~~~~i~~~~~~ 151 (174)
T PRK13695 79 LEDLERIGIPALERALEEADVIIIDEIGKMELKS----PKFVKAVEEVLD-SEKPVIATLHRR--SVHPFVQEIKSRPGG 151 (174)
T ss_pred hHHHHHHHHHHHHhccCCCCEEEEECCCcchhhh----HHHHHHHHHHHh-CCCeEEEEECch--hhHHHHHHHhccCCc
Confidence 999999999999999999999999995 33444 445677777765 689999999983 566789999999999
Q ss_pred ceEEe
Q psy2519 250 RTAFI 254 (622)
Q Consensus 250 ~iv~~ 254 (622)
++...
T Consensus 152 ~i~~~ 156 (174)
T PRK13695 152 RVYEL 156 (174)
T ss_pred EEEEE
Confidence 98765
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.97 E-value=3.7e-09 Score=115.35 Aligned_cols=172 Identities=17% Similarity=0.136 Sum_probs=110.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec---Cc---------c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV---EG---------K 99 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~---~~---------~ 99 (622)
..+++++ +.+ .+|+.+.++|++ |+|||||+++|+|..++ ..|.|.+.|++- .. .
T Consensus 146 ~~vid~l-~~i-----~~Gq~i~I~G~s-----G~GKStLl~~I~~~~~~---~~gvI~~~Gerg~ev~e~~~~~l~~~~ 211 (438)
T PRK07721 146 VRAIDSL-LTV-----GKGQRVGIFAGS-----GVGKSTLMGMIARNTSA---DLNVIALIGERGREVREFIERDLGPEG 211 (438)
T ss_pred hhhhhee-eee-----cCCcEEEEECCC-----CCCHHHHHHHHhcccCC---CeEEEEEEecCCccHHHHHHhhcChhh
Confidence 4567777 777 577788887776 89999999999999988 479999965443 21 2
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc--ccCCccCCcCCCCccccChHHH
Q psy2519 100 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN--SQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 100 ~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~--~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+++.+++|.+.+.-. -.+....+.+ . .+.|.+..-|-.- ..|.. +
T Consensus 212 l~r~v~vv~~~~~~~---~~r~~~~~~a-------------~-~iAEyfr~~g~~Vll~~Dsl------------t---- 258 (438)
T PRK07721 212 LKRSIVVVATSDQPA---LMRIKGAYTA-------------T-AIAEYFRDQGLNVMLMMDSV------------T---- 258 (438)
T ss_pred hcCeEEEEECCCCCH---HHHHHHHHHH-------------H-HHHHHHHHCCCcEEEEEeCh------------H----
Confidence 567889998754311 0111111111 0 0112222222110 01111 1
Q ss_pred HHHHHH-HHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHh-cCCC-----EEEEEeccCcHHHHhhccceeeecC
Q psy2519 178 KRLSFA-TELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 178 qRvsIA-~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~-~~g~-----tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|.+-| |++. +.+.|| |+|+||....++.++++++.+ +.|. ||++.+||+. + .+||++..+.+
T Consensus 259 -r~A~A~rEis-----l~~ge~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~-e--~i~d~v~~i~d 329 (438)
T PRK07721 259 -RVAMAQREIG-----LAVGEPPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMN-E--PIADTVRGILD 329 (438)
T ss_pred -HHHHHHHHHH-----HhcCCCCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCC-c--hhhhhEEEecC
Confidence 11111 1111 123454 789999999999999999974 3575 9999999974 3 78999999999
Q ss_pred CceEEecChHH
Q psy2519 249 SRTAFIGSKDA 259 (622)
Q Consensus 249 G~iv~~G~~~~ 259 (622)
|+++.+++..+
T Consensus 330 G~Ivls~~la~ 340 (438)
T PRK07721 330 GHFVLDRQLAN 340 (438)
T ss_pred EEEEEeccHHH
Confidence 99999998764
|
|
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=98.96 E-value=5e-09 Score=101.44 Aligned_cols=75 Identities=17% Similarity=0.071 Sum_probs=63.2
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCEEEEEeccCcH--------
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------- 234 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-------- 234 (622)
+|+|++| +...+.....+|+++++|||++.+| ...+..+.+.++.+++ .|.|+|+++|+...
T Consensus 72 ~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~-~g~tvi~v~~~~~~~~~~~~~~ 150 (187)
T cd01124 72 IGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKR-FGVTTLLTSEQSGLEGTGFGGG 150 (187)
T ss_pred cchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHH-CCCEEEEEeccccCCCcccCcC
Confidence 9999998 5555555668999999999999999 8888889999999987 69999999997532
Q ss_pred HHHhhccceeeec
Q psy2519 235 ELIDMFDKIILLA 247 (622)
Q Consensus 235 ~i~~~~D~v~~L~ 247 (622)
.+..++|.++.|+
T Consensus 151 ~~~~~aD~ii~l~ 163 (187)
T cd01124 151 DVEYLVDGVIRLR 163 (187)
T ss_pred ceeEeeeEEEEEE
Confidence 2678899999886
|
A related protein is found in archaea. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.1e-08 Score=102.36 Aligned_cols=55 Identities=22% Similarity=0.294 Sum_probs=42.2
Q ss_pred HHHhhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 184 TELLTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 184 ~aL~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
..-+.+|+++|+|||.+|.|+.....+ ..+++.+.+..+.++|++||++ ++.++.
T Consensus 105 l~~~~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~--~l~~~~ 160 (222)
T cd03287 105 LSNCTSRSLVILDELGRGTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYP--SLGEIL 160 (222)
T ss_pred HHhCCCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhccCCeEEEEcccH--HHHHHH
Confidence 334457899999999999998777775 5678888764488999999996 454554
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.9e-09 Score=132.55 Aligned_cols=74 Identities=18% Similarity=0.349 Sum_probs=65.1
Q ss_pred cccChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..||||||+|++||++++ ..|+++||||||++||+.++..+.++|+++++ +.++|++||++ .....||+++.
T Consensus 1088 ~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~--~~~~i~~sh~~--~~~~~~d~~~~ 1163 (1179)
T TIGR02168 1088 SLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSK--NTQFIVITHNK--GTMEVADQLYG 1163 (1179)
T ss_pred cccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhcc--CCEEEEEEcCh--hHHHHhhhHee
Confidence 349999999999999985 56799999999999999999999999999975 47899999997 34578999986
Q ss_pred ec
Q psy2519 246 LA 247 (622)
Q Consensus 246 L~ 247 (622)
+.
T Consensus 1164 ~~ 1165 (1179)
T TIGR02168 1164 VT 1165 (1179)
T ss_pred ee
Confidence 64
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=98.89 E-value=6.5e-09 Score=105.58 Aligned_cols=73 Identities=21% Similarity=0.225 Sum_probs=62.1
Q ss_pred cChHH--------HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHH-HHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 172 LSGGE--------RKRLSFATELLTDPALLLCDEPTTGLDSFSASK-LIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 172 LSgGq--------rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~-i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+|||+ +||+++||++..+++|.+| ||+.+|+.+... ++ +.++.. .+.|.|+.+|.. .....+|.
T Consensus 130 ~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~-~~~~~ivls~~l--a~~~~~pa 202 (249)
T cd01128 130 LSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKG-TGNMELVLDRRL--AERRIFPA 202 (249)
T ss_pred CCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhc-CCCcEEEEchHH--hhCCCCCe
Confidence 89999 9999999999899999999 999999755544 54 566654 578999999996 34578999
Q ss_pred eeeecCCce
Q psy2519 243 IILLADSRT 251 (622)
Q Consensus 243 v~~L~~G~i 251 (622)
|.+|+.|++
T Consensus 203 I~vl~s~sr 211 (249)
T cd01128 203 IDILKSGTR 211 (249)
T ss_pred EEEcCCCCc
Confidence 999999987
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >COG0842 ABC-type multidrug transport system, permease component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.89 E-value=2.4e-07 Score=94.73 Aligned_cols=169 Identities=22% Similarity=0.337 Sum_probs=122.3
Q ss_pred hhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh
Q psy2519 424 MLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS-LA 502 (622)
Q Consensus 424 er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~-~~ 502 (622)
++..++|=..+...+ ..+++++.+.......+...+...+..+..|. .....+..+..++.+......++|.+++ ..
T Consensus 116 ~~g~~~~~~~sp~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~~ 193 (286)
T COG0842 116 EFGTLERLLVSPVSR-LFILLGKIVPYLVVASLIAGLVLLVIAFLLGV-PFLGSLLLLLLLLLLLLLATVALGLLLSTFA 193 (286)
T ss_pred hhCcHHHHHhCCCcH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555533 55666666666665555555555555556662 2333344555566666777777888666 35
Q ss_pred cCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccChHHHH
Q psy2519 503 FSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDGAQVI 582 (622)
Q Consensus 503 ~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g~~~L 582 (622)
.++.+.+..+..++..++..++|.+.|.+.+|.|++|+.++.|..|+.+++-.....+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~l~g~~~p~~~~p~~~~~i~~~~P~t~~~~~~~~~~~~~~~-------------------- 253 (286)
T COG0842 194 KSQLQCASAVGNLLILPLGFLSGVFFPLELLPAWLQGISYINPLTYAIDALRYVYLGGWR-------------------- 253 (286)
T ss_pred hhHHHHHHHHHHHHHHHHHHHccccCchhhhHHHHHHHHHHccHHHHHHHHHHHHhCCCc--------------------
Confidence 577888888888999999999999999999999999999999999999999765443221
Q ss_pred hhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2519 583 NNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRP 620 (622)
Q Consensus 583 ~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~ 620 (622)
..+.+.++++++++.+++.+++...++++.+.
T Consensus 254 ------~~~~~~~~~~l~~~~~v~~~~~~~~~~~~~~~ 285 (286)
T COG0842 254 ------NDGIWISLLILLLFAVVFLLLGLLLLRRRRKL 285 (286)
T ss_pred ------hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 12267889999999999999999998887654
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=98.86 E-value=3.4e-09 Score=93.01 Aligned_cols=73 Identities=11% Similarity=0.014 Sum_probs=56.8
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEE
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFM 107 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV 107 (622)
.++++++++.+ ++++.++++|++ |||||||++++. +|++.++|.++.. ..++.++++
T Consensus 2 ~~aL~~vsl~i-----~~ge~v~I~GpS-----GsGKSTLl~~l~---------~G~i~~~g~di~~~~~~~~~~~~~~~ 62 (107)
T cd00820 2 TTSLHGVLVDV-----YGKVGVLITGDS-----GIGKTELALELI---------KRKHRLVGDDNVEIREDSKDELIGRN 62 (107)
T ss_pred ceEEEeeEEEE-----cCCEEEEEEcCC-----CCCHHHHHHHhh---------CCeEEEeeEeHHHhhhhhcCCEEEEe
Confidence 46899999999 555666766664 899999999986 5889999999854 356667788
Q ss_pred ecCCCCCCCCCHHHHHHHH
Q psy2519 108 YQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 108 ~Q~~~l~~~lTV~E~l~f~ 126 (622)
+|+ + ...|++|||.++
T Consensus 63 ~q~--l-f~~ti~~Ni~~~ 78 (107)
T cd00820 63 PEL--G-LEIRLRLNIFLI 78 (107)
T ss_pred chh--c-chhhHHhhceee
Confidence 776 3 344999999884
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=98.85 E-value=1e-08 Score=103.32 Aligned_cols=75 Identities=17% Similarity=0.256 Sum_probs=53.0
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH------HHH
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELI 237 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~------~i~ 237 (622)
+|+++.++-.+.+.+- .+|+++++||||+++ |+....++.+.++++++ .|.|+++++|.... .+.
T Consensus 96 ~~~~~~~~~~l~~il~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~-~g~tvi~t~~~~~~~~~~~~~~~ 174 (230)
T PRK08533 96 LSGNSEKRKFLKKLMNTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISS-LNKVIILTANPKELDESVLTILR 174 (230)
T ss_pred ccChHHHHHHHHHHHHHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHh-CCCEEEEEecccccccccceeEE
Confidence 6777665555444333 369999999999999 88888999999999987 58877776553210 123
Q ss_pred hhccceeeec
Q psy2519 238 DMFDKIILLA 247 (622)
Q Consensus 238 ~~~D~v~~L~ 247 (622)
.++|-|+.|+
T Consensus 175 ~~~DgvI~L~ 184 (230)
T PRK08533 175 TAATMLIRLE 184 (230)
T ss_pred EeeeEEEEEE
Confidence 4567777775
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=98.80 E-value=1e-08 Score=110.07 Aligned_cols=77 Identities=25% Similarity=0.348 Sum_probs=65.1
Q ss_pred cccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 170 VVLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
.-+|+||||++++|+.|+ .+|++++||||+++||+..+..+.+.+.++ +..+++++|++ +.+...+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~----~~qv~it~~~~-~~~~~~~ 346 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL----GAQVFITTTDL-EDLADLL 346 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc----CCEEEEEcCCh-hhhhhhh
Confidence 359999999999999886 799999999999999999999999988764 34788999985 4555553
Q ss_pred --cceeeecCCce
Q psy2519 241 --DKIILLADSRT 251 (622)
Q Consensus 241 --D~v~~L~~G~i 251 (622)
+++..+++|++
T Consensus 347 ~~~~i~~v~~G~i 359 (361)
T PRK00064 347 ENAKIFHVEQGKI 359 (361)
T ss_pred ccCcEEEEeCCEE
Confidence 47889999986
|
|
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.6e-08 Score=115.50 Aligned_cols=69 Identities=17% Similarity=0.192 Sum_probs=60.7
Q ss_pred hhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH---------hhccceeeecCCceEEecC
Q psy2519 187 LTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI---------DMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~---------~~~D~v~~L~~G~iv~~G~ 256 (622)
..+|+++++|||+.+| |+..+..+.+.++++++ .|.+++++||++. ++. +.||+.++|.+|++...|.
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK-~~~~vil~Tq~~~-d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRK-ANCAVVLATQSIS-DAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCHH-HHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 5799999999999999 79999999999999987 6899999999974 543 6799999999999877664
Q ss_pred h
Q psy2519 257 K 257 (622)
Q Consensus 257 ~ 257 (622)
.
T Consensus 728 ~ 728 (818)
T PRK13830 728 R 728 (818)
T ss_pred H
Confidence 4
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-08 Score=125.90 Aligned_cols=76 Identities=17% Similarity=0.268 Sum_probs=67.6
Q ss_pred ccccChHHHHHHHHHHHHhh----CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 169 KVVLSGGERKRLSFATELLT----DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~----~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+..||||||++++||++++. .|++++||||+++||+..+..+.++|+++++ +.++|++||++ .....||+++
T Consensus 1072 ~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~--~~~~i~~t~~~--~~~~~~d~~~ 1147 (1164)
T TIGR02169 1072 LEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAG--EAQFIVVSLRS--PMIEYADRAI 1147 (1164)
T ss_pred chhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcC--CCeEEEEECcH--HHHHhcceeE
Confidence 45699999999999999985 6799999999999999999999999999864 47899999996 4668999998
Q ss_pred eecC
Q psy2519 245 LLAD 248 (622)
Q Consensus 245 ~L~~ 248 (622)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 8753
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.3e-08 Score=121.81 Aligned_cols=76 Identities=30% Similarity=0.430 Sum_probs=65.7
Q ss_pred cccChHHHH------HHHHHHHHhhC-----C-CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEEeccCcHHH
Q psy2519 170 VVLSGGERK------RLSFATELLTD-----P-ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-TVLCTIHQPSSEL 236 (622)
Q Consensus 170 ~gLSgGqrq------RvsIA~aL~~~-----P-~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~-tvi~~tH~~~~~i 236 (622)
..||||||+ |+++|++++.+ | +++++||||++||+..+..+.++|+++.+ .|. +||++||++ ..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~-~~~~qviiish~~--~~ 856 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRR-LGVEQIVVVSHDD--EL 856 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHh-cCCCeEEEEECCh--HH
Confidence 459999999 99999999864 3 67999999999999999999999999986 564 899999996 44
Q ss_pred HhhccceeeecC
Q psy2519 237 IDMFDKIILLAD 248 (622)
Q Consensus 237 ~~~~D~v~~L~~ 248 (622)
...+|+++.+..
T Consensus 857 ~~~ad~~~~~~~ 868 (880)
T PRK02224 857 VGAADDLVRVEK 868 (880)
T ss_pred HHhcCeeEEeec
Confidence 568999999964
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-08 Score=100.00 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=44.2
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccC
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~ 232 (622)
+|++-....+.+|+++|+|||.+|+|+.....+... ++.+.+..+.++|++||++
T Consensus 98 ~~~~~il~~~~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~ 153 (218)
T cd03286 98 SETANILRHATPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYH 153 (218)
T ss_pred HHHHHHHHhCCCCeEEEEecccCCCCchHHHHHHHHHHHHHHHhcCCcEEEEeccH
Confidence 333333344567999999999999999999998888 7888763389999999996
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.3e-07 Score=99.39 Aligned_cols=71 Identities=18% Similarity=0.265 Sum_probs=55.8
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
.++.+|-.+|+++++|||.+ .+..+.++.+.. .+.+++.|+|..+ +.+..||+..|..|++...|.+.+.
T Consensus 210 ~l~~~Lr~~pd~ii~gE~r~-------~e~~~~l~a~~~-g~~~~i~T~Ha~~--~~~~~~Rl~~l~~~~~~~~g~~~~~ 279 (308)
T TIGR02788 210 LLQSCLRMRPDRIILGELRG-------DEAFDFIRAVNT-GHPGSITTLHAGS--PEEAFEQLALMVKSSQAGLGLDFAY 279 (308)
T ss_pred HHHHHhcCCCCeEEEeccCC-------HHHHHHHHHHhc-CCCeEEEEEeCCC--HHHHHHHHHHHhhccccccCCCHHH
Confidence 34556778999999999996 456677777763 3456799999963 5667999999999999988888776
Q ss_pred H
Q psy2519 261 L 261 (622)
Q Consensus 261 ~ 261 (622)
.
T Consensus 280 ~ 280 (308)
T TIGR02788 280 I 280 (308)
T ss_pred H
Confidence 5
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=98.67 E-value=4e-08 Score=92.02 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC----------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT----------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs----------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.+.++.++...+++...+|+++++|||++ +.|...+..+.++.....+ .+.|+|+++|.+.
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~~~~vv~~~~~~~ 138 (165)
T cd01120 68 PAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK-GGVTVIFTLQVPS 138 (165)
T ss_pred CcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc-CCceEEEEEecCC
Confidence 45666777888899999999999999994 5555656666666666544 7999999999864
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.2e-07 Score=86.36 Aligned_cols=59 Identities=22% Similarity=0.441 Sum_probs=50.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.|.||-=---+.+.+ .+--+.+||||-++|.|.-+.+++..|+++++ .|.-+|+.||.|
T Consensus 130 ~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~-sGaQ~IiATHSP 188 (233)
T COG3910 130 MSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLAD-SGAQIIIATHSP 188 (233)
T ss_pred hccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHh-cCCeEEEEecCh
Confidence 789987554444443 56689999999999999999999999999998 799999999987
|
|
| >TIGR01248 drrC daunorubicin resistance protein C | Back alignment and domain information |
|---|
Probab=98.65 E-value=4.6e-07 Score=85.34 Aligned_cols=131 Identities=15% Similarity=0.044 Sum_probs=96.4
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccH--HHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSL--SVFLMAVLICILIINVATSCGIM 498 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~--~~f~~f~~~~~l~~~~~~s~g~~ 498 (622)
..+|+..++|-+..-. +++.|+++|.+...-..++..++..++.+. .|.+... ...+.++++..+.......++..
T Consensus 14 ~dr~~G~~~~l~~tP~-~~~~~~~g~~l~~~~~~~~~~~ii~~v~~~-~g~~~~~~~~~~~~~~~~~~l~~~~f~~l~~~ 91 (152)
T TIGR01248 14 IDREIGLLSRLWVLPI-HRASALLARIIAETIRAFIGTILILAIALA-LGFRFRNGVAAALLFLLIPSIFGIAFAALVMA 91 (152)
T ss_pred HHHHhHHHHHHHhCCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456678888887776 789999999999999998888877777754 4877653 22333333333334444455555
Q ss_pred HHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHH
Q psy2519 499 FSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALT 554 (622)
Q Consensus 499 i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~ 554 (622)
++...++.+ +......+..|+++.+|.+.|.+++|+|++|+.+++|+.|+.+++-
T Consensus 92 ~a~~~~~~~-~~~~~~~v~~pl~flsg~~~P~~~mP~wlq~ia~~~Plt~~~~~~R 146 (152)
T TIGR01248 92 MALRKEGRF-AMEALELAQAAAAFLNPGATPIKLFPDWAQPLIAHQPISPAIEACA 146 (152)
T ss_pred HHHHcCCHH-HHHHHHHHHHHHHHHhhhhcCHHhCcHHHHHHHhhCCccHHHHHHH
Confidence 555555544 3434577788888999999999999999999999999999999985
|
The model describes daunorubicin resistance protein C in bacteria. This protein confers the function of daunorubicin resistance. The protein seems to share strong sequence similarity to UvrA proteins, which are involved in excision repair of DNA. Disruption of drrC gene showed increased sensitivity upon exposure to duanorubicin. However it failed to complement uvrA mutants to exposure to UV irradiation. The mechanism on how it confers duanomycin resistance is unclear, but has been suggested to be different from DrrA and DrrB which are antiporters. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.3e-07 Score=102.72 Aligned_cols=168 Identities=16% Similarity=0.042 Sum_probs=112.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.+-++++..+..| ..+++.. +.+ ++|+...++|++ |+|||||+++|+|..++ ..|.|.+.|+..
T Consensus 131 ~~r~~i~~~l~TG-iraID~l-l~I-----~~Gqri~I~G~s-----G~GKTtLl~~Ia~~~~~---~~gvI~~iGerg- 194 (432)
T PRK06793 131 FEREEITDVFETG-IKSIDSM-LTI-----GIGQKIGIFAGS-----GVGKSTLLGMIAKNAKA---DINVISLVGERG- 194 (432)
T ss_pred hheechhhccCCC-CEEEecc-cee-----cCCcEEEEECCC-----CCChHHHHHHHhccCCC---CeEEEEeCCCCc-
Confidence 3445566655433 4566663 666 567788777765 89999999999999987 367776666531
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
.+|.|.+...... -++.+. ..+.. +.. -|.|+|
T Consensus 195 -------------------~ev~e~~~~~l~~---------------------~gl~~t--vvv~~--tsd---~s~~~r 227 (432)
T PRK06793 195 -------------------REVKDFIRKELGE---------------------EGMRKS--VVVVA--TSD---ESHLMQ 227 (432)
T ss_pred -------------------ccHHHHHHHHhhh---------------------ccccee--EEEEE--CCC---CCHHHH
Confidence 3566654432111 011110 00111 122 899999
Q ss_pred HHHHHHHHHh-------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 178 KRLSFATELL-------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 178 qRvsIA~aL~-------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
+|++.+.+.+ .++-++++|+||...|+. +++-..+.+.-. .|.+..+.+|.+ .+ ++|.....+|.
T Consensus 228 ~ra~~~a~~iAEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~-~G~~~~~~s~l~--~L---~ERag~~~~GS 299 (432)
T PRK06793 228 LRAAKLATSIAEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPI-GGKTLLMESYMK--KL---LERSGKTQKGS 299 (432)
T ss_pred HHHHHHHHHHHHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCC-CCeeeeeeccch--hH---HHHhccCCCcc
Confidence 9999998887 789999999999999996 777777777765 488888888842 33 44555557888
Q ss_pred eEEecC
Q psy2519 251 TAFIGS 256 (622)
Q Consensus 251 iv~~G~ 256 (622)
+...++
T Consensus 300 iT~~~t 305 (432)
T PRK06793 300 ITGIYT 305 (432)
T ss_pred eEEEEE
Confidence 866554
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=98.56 E-value=9.6e-08 Score=102.61 Aligned_cols=59 Identities=24% Similarity=0.293 Sum_probs=54.4
Q ss_pred cccChHHHHHHHHHHHHhh---------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 170 VVLSGGERKRLSFATELLT---------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~---------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.-+|.||||++.||..|+. +|+|||||||+++||+..+..+++.|++. |.++++++|++
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~----~~qv~it~~~~ 341 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL----GVQVFVTAISL 341 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc----CCEEEEEecCh
Confidence 3589999999999999999 99999999999999999999999999753 67999999986
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-07 Score=101.58 Aligned_cols=77 Identities=18% Similarity=0.234 Sum_probs=64.0
Q ss_pred ccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 171 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
-+|+||||++++|..|+ .+|++++||||+++||+..+..+.+.|.+.. .++|.+|+.+ +.+|
T Consensus 263 ~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~----q~~it~t~~~-----~~~~ 333 (349)
T PRK14079 263 YASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP----QAIVAGTEAP-----PGAA 333 (349)
T ss_pred hCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC----cEEEEcCCCC-----CCCc
Confidence 48999999999999999 8999999999999999999999998886532 3566666543 5789
Q ss_pred ceeeecCCceEEecC
Q psy2519 242 KIILLADSRTAFIGS 256 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~ 256 (622)
+++.+.+|++.-..|
T Consensus 334 ~~~~~~~~~~~~~~~ 348 (349)
T PRK14079 334 LTLRIEAGVFTPEAP 348 (349)
T ss_pred eEEEEeccEecCCCC
Confidence 999999988764433
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-06 Score=87.75 Aligned_cols=75 Identities=19% Similarity=0.191 Sum_probs=57.3
Q ss_pred cChHHHHHHHHHHHHhh--CCCeEEEeCCCCC---CCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH------HHHhhc
Q psy2519 172 LSGGERKRLSFATELLT--DPALLLCDEPTTG---LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS------ELIDMF 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~--~P~lLlLDEPTsg---LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~------~i~~~~ 240 (622)
.|.++++.+.....++. +|+++++||||+. .|.....++++.++++++ .|.|+++++|+... .+..++
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~-~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVD-LGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHh-CCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 67889999999999997 9999999999964 555555566666777776 68999999997532 145566
Q ss_pred cceeeec
Q psy2519 241 DKIILLA 247 (622)
Q Consensus 241 D~v~~L~ 247 (622)
|-++.|+
T Consensus 180 DgvI~L~ 186 (234)
T PRK06067 180 DVYLKLR 186 (234)
T ss_pred EEEEEEE
Confidence 7776665
|
|
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=98.48 E-value=7.2e-07 Score=87.78 Aligned_cols=57 Identities=23% Similarity=0.275 Sum_probs=42.8
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++++|..+|+++++|||. |+.+...+ .+.+. .|..++.++|.++ +.+..||++.+.
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~----l~~a~-~G~~v~~t~Ha~~--~~~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA----LTAAE-TGHLVMSTLHTNS--AAKTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH----HHHHH-cCCEEEEEecCCc--HHHHHhHHHhhc
Confidence 4778899999999999996 55543333 34454 6899999999963 446789988774
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=98.44 E-value=7.9e-07 Score=90.08 Aligned_cols=46 Identities=22% Similarity=0.341 Sum_probs=40.6
Q ss_pred HhhCCCeEEEeCCCC------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPTT------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPTs------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
...+|+++++| |++ .+|+.....+++.|++++++.|.||++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 765 47999999999999999987799999999985
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.2e-07 Score=108.29 Aligned_cols=77 Identities=34% Similarity=0.361 Sum_probs=67.5
Q ss_pred ccccChHHHHHHHHHHHHh------hC--CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 169 KVVLSGGERKRLSFATELL------TD--PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~------~~--P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+..|||||+-.++||.+|+ .+ -+.|+|||||..||+.....+++.|..+.. .+.+|++|||++ +..+.+
T Consensus 813 ~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~-~~~qiiIISH~e--el~e~~ 889 (908)
T COG0419 813 IKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLS-DGRQIIIISHVE--ELKERA 889 (908)
T ss_pred cccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHh-cCCeEEEEeChH--HHHHhC
Confidence 3459999999888877665 35 689999999999999999999999999997 599999999995 788899
Q ss_pred cceeeecC
Q psy2519 241 DKIILLAD 248 (622)
Q Consensus 241 D~v~~L~~ 248 (622)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 99998864
|
|
| >TIGR03518 ABC_perm_GldF gliding motility-associated ABC transporter permease protein GldF | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00021 Score=72.51 Aligned_cols=220 Identities=18% Similarity=0.141 Sum_probs=123.7
Q ss_pred HHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhhc---CCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhhhh
Q psy2519 349 YVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFAG---SIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDML 425 (622)
Q Consensus 349 ~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~~---~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~er 425 (622)
+.+.||.++.++|.|.....-.+..++.|+.. ..+.+ ....+.++.+.-.+... ..+....++. . .
T Consensus 2 ~~i~~kEl~~~f~sp~~yv~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~~f~~~~--~~~~~~~p~l-------~-~ 70 (240)
T TIGR03518 2 KAIFKKEFNSFFSSPIGYLVIAVFLLANGLFL-WVFPGDFNILDYGYADLTPFFSLAP--WVFLFLIPAI-------T-M 70 (240)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH-HHHhhhhhHHhcCcchHHHHHHHHH--HHHHHHHHHH-------H-H
Confidence 46889999999999988765444444445332 22211 10111122222111111 1111111111 1 2
Q ss_pred hHHHHHhcCCCc--------ChHHHHHHHHHHHHHHHHHHHH---HHHhhhhhccCC--cccHHHHHHHHHHHHHHHHHH
Q psy2519 426 PLFHREYSSGLY--------SAFQFYLSYILSSLPGLIIQAV---LFTVILYWISGL--RNSLSVFLMAVLICILIINVA 492 (622)
Q Consensus 426 ~v~~rE~~~g~Y--------~~~~y~la~~l~~lp~~~~~~~---~f~~i~Y~~~gl--~~~~~~f~~f~~~~~l~~~~~ 492 (622)
..+.|||++|.. +.+.++++|.++-.-..++..+ ++....++.... ..+...++..++..++...+.
T Consensus 71 ~~ia~Er~~GTle~Llt~Pvs~~~ivlgK~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 150 (240)
T TIGR03518 71 RSFAEERKLGTLELLLTRPISDWQIILGKYLGSLTLVILALLPTLLYVFTIYQLGNPVGNLDIGSTFGSYIGLLLLGSVY 150 (240)
T ss_pred HHHHHHHHcCHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 566677777764 5688999999988765443332 222222222111 124555555555666777788
Q ss_pred HHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCC--CccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCC
Q psy2519 493 TSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSL--PPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNP 570 (622)
Q Consensus 493 ~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~i--p~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~ 570 (622)
.++|.++|+++.+...|..++..+...+.+..+. ..++ |++.+|+.|+||..|-.+.. +|. .
T Consensus 151 ~aig~~iSsl~~~q~~a~~~~~~~~~~l~~~~~~---l~~~~~~~~~~~l~~~sp~~~~~~~~-----~g~-i------- 214 (240)
T TIGR03518 151 TAIGLFASSLTENQIVAFIIAVFLCFLFYFGFDG---LASLLWGGSAYTISELGLSYHYESIS-----RGV-I------- 214 (240)
T ss_pred HHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHH---HhhhcchhHHHHHHHcCHHHHHHHHH-----cCc-c-------
Confidence 8999999999998888766554433222221122 2233 78889999999987754433 111 0
Q ss_pred CCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 571 DLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 571 ~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.+.++...+.+.+++..++...+++
T Consensus 215 ---------------------~~~~~v~~~~~~~~~l~l~~~~~~~ 239 (240)
T TIGR03518 215 ---------------------DSRDVIYFLSITVLFLALTKLQLKS 239 (240)
T ss_pred ---------------------cHhHHHHHHHHHHHHHHHHHHHHhc
Confidence 1356777888888887777766654
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldF is believed to be a ABC transporter permease protein (along with ATP-binding subunit, GldA and a sunstrate-binding subunit, GldG) and is linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldF abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-06 Score=109.22 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=52.7
Q ss_pred ccccChHHHHHHH----HHHH--------HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 169 KVVLSGGERKRLS----FATE--------LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 169 ~~gLSgGqrqRvs----IA~a--------L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
..+||||||||++ +|++ +..+|++++|||||+|||+..+..+++++.++ |.++|+++|..
T Consensus 1245 ~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l----~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1245 FGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL----DLDFVMTSERE 1316 (1353)
T ss_pred ccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh----CCCEEEEccch
Confidence 3569999999996 5645 55899999999999999999999999999887 67899999974
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >COG1682 TagG ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00038 Score=71.40 Aligned_cols=208 Identities=15% Similarity=0.163 Sum_probs=132.3
Q ss_pred hHHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCC--CCChhhHHHHHHHHHHHHHHHHHHhHHHHHhh
Q psy2519 344 WFTIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSI--DLTQRGVQSVQGALFIMVTENTFSPMYSVLSQ 420 (622)
Q Consensus 344 ~~~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~--~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~ 420 (622)
.++..+.|.+|+++..+|+...- .--++.-+++.++++.+|-.+. +...--..-..|.+.+..... +...+...
T Consensus 16 ~~~li~~L~~~eik~Ryr~s~LG~~W~~l~P~~~~~~~~~vf~~l~~~~~~~~~~~l~~G~~~w~f~~~---~i~~~~~s 92 (263)
T COG1682 16 YRRLIGALVKREIKTRYRRSVLGYLWSLLNPLLMILVYTLVFGALLRSPGLNFLAYLLAGLILWFFFSE---AISEGAGS 92 (263)
T ss_pred HHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHH---HHHhHHHH
Confidence 56788899999999988886542 2334455666666666664331 111111122223222221111 12233445
Q ss_pred hhhhhhHHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISGLRNSLSVFLMAVLICILIINVATSCGIMFS 500 (622)
Q Consensus 421 f~~er~v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~ 500 (622)
+.+...++++-+ ..+..+.+++++.++-..++..++....+-+.-+.+ +. .+..+...+.+..+.+.++|++++
T Consensus 93 ~~~n~~li~k~~----~p~~~~~~~~~~~~~~~~~i~~iiil~~~i~~~~~~-s~-~~l~~~~~l~~l~l~~~g~~l~~a 166 (263)
T COG1682 93 VVANAALIKKIN----FPPLILPVARTLSRLFNFLIHLIIILIFLIILGVEP-SW-HWLLLLPALLLLILFSVGLGLILA 166 (263)
T ss_pred hhhhHHHHhCCC----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-cH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655555655433 388899999999998876666666555555544443 33 344444555566677778888877
Q ss_pred HhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCC
Q psy2519 501 LAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQG 560 (622)
Q Consensus 501 ~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~ 560 (622)
.++..+.---.+...+.-+++..+|.+-+.+.+|+-++|+.++||+.|-.|.+-..-+++
T Consensus 167 ~l~v~fRD~~~i~~~v~~~~f~~sPIi~~~~~~p~~~~~~~~~NP~~~iie~~R~~~~~~ 226 (263)
T COG1682 167 SLGVRFRDLGQILGVVLQLLFFLSPIIYPVSNLPEQLRELVLLNPLTHIIESFRAPLLGG 226 (263)
T ss_pred hHhhhcccHHHHHHHHHHHHHHhCceeeehhhccHHHHHHHHHCcHHHHHHHHHHHHhCC
Confidence 776443333345556777888899999999999999999999999999999987665543
|
|
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=98.26 E-value=2.4e-06 Score=85.22 Aligned_cols=60 Identities=38% Similarity=0.609 Sum_probs=53.3
Q ss_pred cChHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 172 LSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|.|+||.+.++..|...+ .++++|||-++|+|..+..+++.|+++++ .+.-+|++||.|
T Consensus 237 ~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~-~~~QviitTHSp 299 (303)
T PF13304_consen 237 LSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSK-KNIQVIITTHSP 299 (303)
T ss_dssp --HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGG-GSSEEEEEES-G
T ss_pred CCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCc-cCCEEEEeCccc
Confidence 7999999999999988776 89999999999999999999999999876 688999999987
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.1e-05 Score=68.79 Aligned_cols=59 Identities=32% Similarity=0.345 Sum_probs=46.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHH-----HHHHHHhcCCCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIR-----MMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~-----~l~~l~~~~g~tvi~~tH 230 (622)
..+++..+..++++--.+|+++++||+..-.+......... .........+..+|+++|
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 124 (148)
T smart00382 61 GSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTN 124 (148)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeC
Confidence 77888888888888888899999999999999998887765 223333335788999998
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=98.20 E-value=5.5e-08 Score=108.53 Aligned_cols=81 Identities=15% Similarity=0.130 Sum_probs=60.7
Q ss_pred HHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 148 LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 148 l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA--~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
++.+++.+..++.... +|+||+|||.|+ .+|..+|+.. +..+.++.++++.+++ .|.|+
T Consensus 100 ~~~~~l~~~l~~i~~~--------ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r~~l~~Li~~L~~-~g~Tv 160 (484)
T TIGR02655 100 VGGFDLSALIERINYA--------IRKYKAKRVSIDSVTAVFQQYDAV----------SVVRREIFRLVARLKQ-IGVTT 160 (484)
T ss_pred cccCCHHHHHHHHHHH--------HHHhCCcEEEEeehhHhhhhcCch----------HHHHHHHHHHHHHHHH-CCCEE
Confidence 3445555555555444 999999999999 6666666543 5678889999999987 79999
Q ss_pred EEEeccCcHH-------H-Hhhccceeeec
Q psy2519 226 LCTIHQPSSE-------L-IDMFDKIILLA 247 (622)
Q Consensus 226 i~~tH~~~~~-------i-~~~~D~v~~L~ 247 (622)
|+++|++... + ..++|.|+.|+
T Consensus 161 LLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 161 VMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred EEEecCcccccccccCCceeEeeeeEEEEE
Confidence 9999985320 2 56789999986
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=98.17 E-value=4.6e-06 Score=91.99 Aligned_cols=140 Identities=12% Similarity=0.060 Sum_probs=88.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
.++.+.++|+| |+||||++..|++..... .|. +++++|.+|. ...++.|+|.+.++
T Consensus 255 ~g~Vi~LvGpn-----GvGKTTTiaKLA~~~~~~---~G~-------------~kV~LI~~Dt---~RigA~EQLr~~Ae 310 (484)
T PRK06995 255 RGGVFALMGPT-----GVGKTTTTAKLAARCVMR---HGA-------------SKVALLTTDS---YRIGGHEQLRIYGK 310 (484)
T ss_pred CCcEEEEECCC-----CccHHHHHHHHHHHHHHh---cCC-------------CeEEEEeCCc---cchhHHHHHHHHHH
Confidence 45667777776 899999999999977541 232 2578888875 45789999999877
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH-HHHHHHHHhhCC-----CeEEEeCCCCCC
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK-RLSFATELLTDP-----ALLLCDEPTTGL 202 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq-RvsIA~aL~~~P-----~lLlLDEPTsgL 202 (622)
.... +........+..++..++.+.....|.+ ...+++. .+.-..+++.++ .+|.||+++.+
T Consensus 311 ilGV---pv~~~~~~~Dl~~aL~~L~d~d~VLIDT--------aGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~- 378 (484)
T PRK06995 311 ILGV---PVHAVKDAADLRLALSELRNKHIVLIDT--------IGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHG- 378 (484)
T ss_pred HhCC---CeeccCCchhHHHHHHhccCCCeEEeCC--------CCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcH-
Confidence 6532 1111122334455667777766666666 2222322 234444555554 68999999988
Q ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 203 DSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 203 D~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
..+.+.++.... .+.+-++.|+
T Consensus 379 -----~~l~~i~~~f~~-~~~~g~IlTK 400 (484)
T PRK06995 379 -----DTLNEVVQAYRG-PGLAGCILTK 400 (484)
T ss_pred -----HHHHHHHHHhcc-CCCCEEEEeC
Confidence 345555566654 5666666666
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.10 E-value=7.3e-06 Score=70.07 Aligned_cols=46 Identities=33% Similarity=0.565 Sum_probs=35.4
Q ss_pred ccChHHHH-HHHHHHH------Hhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2519 171 VLSGGERK-RLSFATE------LLT------DPALLLCDEPTTGLDSFSASKLIRMMRE 216 (622)
Q Consensus 171 gLSgGqrq-RvsIA~a------L~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~ 216 (622)
++|||||| .++++.+ +-. .|++++||||+++||+..+..+++++++
T Consensus 32 ~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 32 TLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp GS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred CCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 39999994 4444433 223 3799999999999999999999999875
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.07 E-value=5.2e-06 Score=83.39 Aligned_cols=42 Identities=19% Similarity=0.150 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhccceeeec
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLA 247 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~D~v~~L~ 247 (622)
..+++...+.+.+++.|.|+|+++|... ..+..++|.|+.|+
T Consensus 140 ~~r~~~~~l~~~l~~~~~tvil~~~~~~~~~~~~~~~~~~l~D~vI~L~ 188 (229)
T TIGR03881 140 MARKYSYYLKRVLNRWNFTILLTSQYAITTSQAFGFGIEHVADGIIRFR 188 (229)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecccccCCCCcccceEEEEeEEEEEE
Confidence 3445555566555558999999999632 13556789999886
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >PRK15176 Vi polysaccharide export inner membrane protein VexB; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.0014 Score=67.54 Aligned_cols=239 Identities=12% Similarity=0.105 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHHHHhhcChHHH-HHHHHHHHHHHHHHHHHhhcCCCCChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhhh
Q psy2519 345 FTIIYVLISRSFLNVVRDPAIQ-LSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPD 423 (622)
Q Consensus 345 ~~Q~~~L~~R~~~~~~Rd~~~~-~~r~~~~~~~~l~~G~~f~~~~~~~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~~ 423 (622)
.+-++.|.+|.++..+|+-..- .--++.-+++.+++..+|-...+..+.+ ..+..|..+....+....+++..-..
T Consensus 18 ~~li~~L~~rdlk~ry~~s~LG~~W~~l~Pll~~~v~~~vF~~~~~~~~~~---~~~~~fl~~Gl~pw~~fs~~~~~~~~ 94 (264)
T PRK15176 18 CELIILLMSRDIKTRYNGNLLNYMMVLAVPLVWISITVISFQYLNRSVPIS---TDDISFVIAGILPYLLFRYTITATMR 94 (264)
T ss_pred HHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---cchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788999999888875542 3334555666666666654321111100 01124444433333333332222111
Q ss_pred hhhHHHHHh-cCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhh-ccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2519 424 MLPLFHREY-SSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYW-ISGLRNSLSVFLMAVLICILIINVATSCGIMFSL 501 (622)
Q Consensus 424 er~v~~rE~-~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~-~~gl~~~~~~f~~f~~~~~l~~~~~~s~g~~i~~ 501 (622)
-..+..... -.+.| .....++....+.--.++.-++...+++. ..+..++.. ..+...+++..+.+.++|+++|+
T Consensus 95 a~si~~~~~li~kv~-~p~~i~p~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--l~~~~~~ll~~l~~~glglils~ 171 (264)
T PRK15176 95 THSFSTSLAVVSQVK-KRHVIFSLAAIEFVNAVIIYIIISLINFLIFSRWEAQKP--FLIFEGMVIAWLLGLSFGYFCDA 171 (264)
T ss_pred HHHHHHHhhcCCCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCChhhH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111 11122 33333444433433222222221111111 113333322 22222233355556677776666
Q ss_pred hc---CCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCccCh
Q psy2519 502 AF---SSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCLEDG 578 (622)
Q Consensus 502 ~~---~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~~~g 578 (622)
+. +|.+. +.++++.+.+..+|.+-+.+.+|+.++|+.++||+.+..|+.-..-+++..
T Consensus 172 l~v~~rDi~~---i~~~~l~~lf~~SpI~y~~~~vp~~~~~il~~NPl~~~ie~~R~~~~~~~~---------------- 232 (264)
T PRK15176 172 LSERFPLVYK---AVPVMLRPMFLISAVFYTANELPYSLLSIFSWNPLLHANEIVREGMFEGYH---------------- 232 (264)
T ss_pred HHHhCccHHH---HHHHHHHHHHHHhhHhhhHHhCcHHHHHHHHHCcHHHHHHHHHHHHhcCcC----------------
Confidence 55 66554 445567777888898888899999999999999999999998766664321
Q ss_pred HHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhccc
Q psy2519 579 AQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSRP 620 (622)
Q Consensus 579 ~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~~ 620 (622)
..|.++...+++.++..+++++..|..+.+
T Consensus 233 ------------~~~~~~~~~~~~~~~~l~~G~~~~~~~~~~ 262 (264)
T PRK15176 233 ------------SLYLEPFYPLAFSATLFLAGLIFHLICDTE 262 (264)
T ss_pred ------------ccccChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 011234566677777777777766665544
|
|
| >PF12679 ABC2_membrane_2: ABC-2 family transporter protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0011 Score=67.87 Aligned_cols=165 Identities=21% Similarity=0.296 Sum_probs=93.3
Q ss_pred hHHHHHhcCCC--------cChHHHHHHHHHHHHHHHHH--HHHH--HHh-hhhhc-cCCcccHHHHHHHHHHHHHHHH-
Q psy2519 426 PLFHREYSSGL--------YSAFQFYLSYILSSLPGLII--QAVL--FTV-ILYWI-SGLRNSLSVFLMAVLICILIIN- 490 (622)
Q Consensus 426 ~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~--~~~~--f~~-i~Y~~-~gl~~~~~~f~~f~~~~~l~~~- 490 (622)
..+.+|+++|. +++..++++|.++.....++ .... +.+ ..++. .|.+.+...++.......+..+
T Consensus 88 ~~ia~E~e~gTi~~lls~PisR~~i~~gK~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (277)
T PF12679_consen 88 DLIAGERERGTIELLLSKPISRSEILLGKFLAAILFSLLLLIALLVGYLLTLVLIAISGIPIDLSSFLLLLLLFVLLLLA 167 (277)
T ss_pred HHHHhccccCEeeHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHH
Confidence 35566666653 68899999999999876422 1111 111 11222 3445556655554444333333
Q ss_pred --HHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeee-cCCCCC--ccc--hhhhccCHHHHHHHHHHHHHhCCCcc
Q psy2519 491 --VATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFY-KLSSLP--PYF--VWIRYLSWLEYSNEALTITQWQGVTN 563 (622)
Q Consensus 491 --~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v-~~~~ip--~~~--~Wl~ylS~~~Ya~eal~~nef~~~~~ 563 (622)
+..+++.++|+.+++...|+.++..+............ ..++.. .+. ..+.+++|..+ ++.+......+..
T Consensus 168 ~~~~~sl~~~~S~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~- 245 (277)
T PF12679_consen 168 VLVFISLGLLISSLFRSSASAILASLGLLFLLFFLYPIIVFSIANSEALPWVISPNLSFLSPFSP-FNLLIGSILGGGF- 245 (277)
T ss_pred HHHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHhHHHHcChHHH-HHHHHHHhhcccc-
Confidence 45899999999999888888877766655543333322 111111 111 33456666542 2322222221100
Q ss_pred cccCCCCCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHh
Q psy2519 564 ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLM 616 (622)
Q Consensus 564 ~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~ 616 (622)
.+...|.++++++++.+++..+++..+++
T Consensus 246 ------------------------~~~~~~~~~~~~~~~~~v~l~la~~~F~r 274 (277)
T PF12679_consen 246 ------------------------VWLSTWPSLLILLAYTLVFLALAYYRFQR 274 (277)
T ss_pred ------------------------chhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 00346788999999999999999865544
|
|
| >PF12698 ABC2_membrane_3: ABC-2 family transporter protein; PDB: 2P0S_B 3CNI_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.3e-06 Score=91.35 Aligned_cols=157 Identities=25% Similarity=0.371 Sum_probs=0.0
Q ss_pred hhhhhh--HHHHHhcCCCcChHHHHHHHHHHHHHHHHHHHHHHHhhhhhccC---CcccHHHHHHHHHHHHHHHHHHHHH
Q psy2519 421 FPDMLP--LFHREYSSGLYSAFQFYLSYILSSLPGLIIQAVLFTVILYWISG---LRNSLSVFLMAVLICILIINVATSC 495 (622)
Q Consensus 421 f~~er~--v~~rE~~~g~Y~~~~y~la~~l~~lp~~~~~~~~f~~i~Y~~~g---l~~~~~~f~~f~~~~~l~~~~~~s~ 495 (622)
..+||. +..|-+..|. +...|++++.+..+...++..+++.++ +.| ++.. .++..++.+++..++..++
T Consensus 182 i~~ek~~~~~~~l~~~~~-~~~~~~~~~~l~~~~~~~i~~~i~~~i---~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~ 255 (344)
T PF12698_consen 182 IVEEKESGTRERLLSSGV-SPWSYWLSKFLAYFLVSLIQSLIIIII---IFGISGIPFG--NFLLLLLLLLLFSLAFISF 255 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhHhhhhhhHhhhcccC-CHHHHHHHHHHHHhhHHHHHHHHHHHH---HhccccCccc--chHHHHHHHHHHHHHHHHH
Confidence 345554 4444445664 889999999999999988888776664 334 4433 4555556777788889999
Q ss_pred HHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeecCCCCCccchhhhccCHHHHHHHHHHHHHhCCCcccccCCCCCCCCc
Q psy2519 496 GIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYKLSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTNITCFDNPDLPCL 575 (622)
Q Consensus 496 g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~~~C~~~~~~~c~ 575 (622)
+.+++.++++...|..+++++..+.+.++|.+.+.+++|.+++|+.++.|..|..+++....+++
T Consensus 256 ~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~P~~~~~~~~~~~~~~~--------------- 320 (344)
T PF12698_consen 256 GFLISSFFKNSSTAISVASIIILLLSFLSGGFFPLSSLPSFLQWISSFLPFYWFIQGLRNIIYGD--------------- 320 (344)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHhhHHHHHHHHHHHHHhc---------------
Confidence 99999999999999888888888666667777778899999999999999999888875432110
Q ss_pred cChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHH
Q psy2519 576 EDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAF 611 (622)
Q Consensus 576 ~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~ 611 (622)
....|.++++++++.+++.++++
T Consensus 321 -------------~~~~~~~~~~l~~~~~v~~~l~~ 343 (344)
T PF12698_consen 321 -------------WSEIWISLIILLLFAVVYLLLAI 343 (344)
T ss_dssp ------------------------------------
T ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHh
Confidence 12256677888888777776664
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.4e-06 Score=88.76 Aligned_cols=88 Identities=15% Similarity=0.081 Sum_probs=69.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----------ccc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----------KFR 101 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----------~~r 101 (622)
+.+++++ +.+ ++|+.+.++|+| |||||||+++|+|..+++...-|.|-.+|+++.. ..|
T Consensus 143 i~aID~l-l~I-----~~GQ~igI~G~s-----GaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~r 211 (434)
T PRK07196 143 VNAINGL-LTI-----GKGQRVGLMAGS-----GVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAK 211 (434)
T ss_pred eeeccce-EeE-----ecceEEEEECCC-----CCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccce
Confidence 5688888 888 678888888776 8999999999999998753334667667766532 135
Q ss_pred ccEEEEecCCCCCCCCCHHHHHHHHHHcC
Q psy2519 102 SACGFMYQHDLFSPSLTVYEHLYFMALLK 130 (622)
Q Consensus 102 ~~igyV~Q~~~l~~~lTV~E~l~f~~~l~ 130 (622)
..+++++|++..+..+++.|++.+.+...
T Consensus 212 svvv~~~~d~s~~~rl~a~e~a~~iAEyf 240 (434)
T PRK07196 212 SVVVAAPADESPLMRIKATELCHAIATYY 240 (434)
T ss_pred EEEEEecCCCChhhhHHHHHHHHHHHHHh
Confidence 67999999999999999999998877653
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=97.98 E-value=3.2e-05 Score=82.62 Aligned_cols=57 Identities=19% Similarity=0.265 Sum_probs=43.5
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+++++|-.+|+++++||+. |+.+....++ .+. .|.+|+.++|-. ......+|++-|-
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~----aa~-tGh~v~~T~Ha~--~~~~~~~Rl~~~~ 243 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT----AAE-TGHLVFGTLHTN--SAAQTIERIIDVF 243 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH----HHH-cCCcEEEEEcCC--CHHHHHHHHHHhc
Confidence 4667888999999999997 8887765444 344 699999999985 3446778887664
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.93 E-value=3.6e-05 Score=74.90 Aligned_cols=75 Identities=9% Similarity=-0.004 Sum_probs=54.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCC--CCCCCCCHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHD--LFSPSLTVYEHLY 124 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~--~l~~~lTV~E~l~ 124 (622)
++++.+++.|++ |||||||+++|+|+.++ ..|.|.+++..-.. ..+..++++.|.+ ...+..|+.+.+.
T Consensus 23 ~~g~~i~I~G~t-----GSGKTTll~aL~~~i~~---~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 94 (186)
T cd01130 23 EARKNILISGGT-----GSGKTTLLNALLAFIPP---DERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLR 94 (186)
T ss_pred hCCCEEEEECCC-----CCCHHHHHHHHHhhcCC---CCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHH
Confidence 356666666665 89999999999999987 47999997743221 2345577776654 3567889999998
Q ss_pred HHHHcC
Q psy2519 125 FMALLK 130 (622)
Q Consensus 125 f~~~l~ 130 (622)
...+.+
T Consensus 95 ~~lR~~ 100 (186)
T cd01130 95 SALRMR 100 (186)
T ss_pred HHhccC
Confidence 877654
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=97.90 E-value=4.8e-06 Score=90.59 Aligned_cols=52 Identities=12% Similarity=0.043 Sum_probs=41.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEEECCEecCc
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIRVNGKPVEG 98 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~~~G~~~~~ 98 (622)
.++|++|++++ .+|+.++++|+ |||||||||+ .|+..|. +| +|.++|+++..
T Consensus 19 ~~vL~~Vsl~i-----~~GEiv~L~G~-----SGsGKSTLLr--~~l~~~~---sGg~I~ldg~~~~~ 71 (504)
T TIGR03238 19 ERILVKFNKEL-----PSSSLLFLCGS-----SGDGKSEILA--ENKRKFS---EGYEFFLDATHSFS 71 (504)
T ss_pred HHHHhCCceee-----cCCCEEEEECC-----CCCCHHHHHh--cCCCCCC---CCCEEEECCEECCC
Confidence 35789999999 56666666655 4899999999 7888773 56 89999999854
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=97.89 E-value=6.7e-05 Score=82.30 Aligned_cols=174 Identities=20% Similarity=0.175 Sum_probs=104.3
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe---cCc---------c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP---VEG---------K 99 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~---~~~---------~ 99 (622)
..+++++ +.+ .+|++..++|++ |+|||||+++|+|..+++ .|.+...|+. +.. .
T Consensus 151 i~~iD~l-~~i-----~~Gq~~~I~G~s-----G~GKStLl~~I~~~~~~~---~~vi~~iG~r~~ev~~~~~~~~~~~~ 216 (440)
T TIGR01026 151 VRSIDGL-LTV-----GKGQRIGIFAGS-----GVGKSTLLGMIARNTEAD---VNVIALIGERGREVREFIEHDLGEEG 216 (440)
T ss_pred eeeeeec-ccc-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCCCC---EEEEEEEeecchHHHHHHHHHhcccc
Confidence 5677777 666 567788888776 899999999999998874 5666665553 321 1
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh-HHHH
Q psy2519 100 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG-GERK 178 (622)
Q Consensus 100 ~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg-Gqrq 178 (622)
+++.+-++.+.+. ++.+-..- + ..... +.+.+..-|- ++. -.+.+ ++- -|-+
T Consensus 217 l~~tvvv~~~~d~-----~p~~r~~~-~----------~~a~t-~AE~frd~G~-~Vl-l~~Ds--------lTr~A~A~ 269 (440)
T TIGR01026 217 LKRSVVVVATSDQ-----SPLLRLKG-A----------YVATA-IAEYFRDQGK-DVL-LLMDS--------VTRFAMAQ 269 (440)
T ss_pred cceEEEEEECCCC-----CHHHHHHH-H----------HHHHH-HHHHHHHCCC-CEE-EEEeC--------hHHHHHHH
Confidence 3344455555332 11111110 0 00011 1122222232 111 00111 111 1111
Q ss_pred HHHHHHHHhhCCCeEEEeCC--CCCCCHHHHHHHHHHHHHHHhcCCC-------EEEEEeccCcHHHHhhccceeeecCC
Q psy2519 179 RLSFATELLTDPALLLCDEP--TTGLDSFSASKLIRMMRELTSQRKK-------TVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEP--TsgLD~~~~~~i~~~l~~l~~~~g~-------tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|++. +.+.|| +.|+||.....+.+++.+... .+. ||++.+||.. ..++|++..+.+|
T Consensus 270 -----REis-----l~~ge~P~~~Gypp~~~~~l~~l~ERag~-~~~GSIT~i~tVl~~~~d~~---dpi~d~~~~i~dG 335 (440)
T TIGR01026 270 -----REIG-----LAAGEPPATKGYTPSVFSTLPRLLERAGA-SGKGSITAFYTVLVEGDDMN---EPIADSVRGILDG 335 (440)
T ss_pred -----HHHH-----HhcCCCCcccccChhHHHHHHHHHHHhcc-CCCCeeeEEEEEEccCcCCC---cchhhhhccccce
Confidence 1111 345675 459999999999999999886 567 8888999963 3478999999999
Q ss_pred ceEEecChHHH
Q psy2519 250 RTAFIGSKDAA 260 (622)
Q Consensus 250 ~iv~~G~~~~~ 260 (622)
+++.+.+.++.
T Consensus 336 ~ivLsr~la~~ 346 (440)
T TIGR01026 336 HIVLSRALAQR 346 (440)
T ss_pred EEEEecchhhC
Confidence 99999887654
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.88 E-value=2.3e-05 Score=85.40 Aligned_cols=82 Identities=17% Similarity=0.139 Sum_probs=62.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC---
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN--- 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~--- 92 (622)
+..+.++++..|..| +.+++.++ .+ .+|+...|+|++ ||||||||++|+++.+| ..|.|.+.
T Consensus 138 ~~~~r~~v~~~l~TG-i~aID~L~-~I-----~~Gqri~I~G~S-----GsGKTTLL~~Ia~l~~p---d~gvv~liGer 202 (450)
T PRK06002 138 PAMTRARVETGLRTG-VRVIDIFT-PL-----CAGQRIGIFAGS-----GVGKSTLLAMLARADAF---DTVVIALVGER 202 (450)
T ss_pred CCeEeecceEEcCCC-cEEeeeec-ee-----cCCcEEEEECCC-----CCCHHHHHHHHhCCCCC---CeeeeeecccC
Confidence 456778899888655 66777774 55 577788888775 89999999999999988 47988886
Q ss_pred CEecCc--------cccccEEEEecCCC
Q psy2519 93 GKPVEG--------KFRSACGFMYQHDL 112 (622)
Q Consensus 93 G~~~~~--------~~r~~igyV~Q~~~ 112 (622)
|+++.. ..++.+++|+|.+.
T Consensus 203 grev~e~~~~~l~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 203 GREVREFLEDTLADNLKKAVAVVATSDE 230 (450)
T ss_pred CccHHHHhHHHHHHhhCCeEEEEEcCCC
Confidence 455432 13568999999764
|
|
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=97.82 E-value=1.9e-05 Score=77.46 Aligned_cols=106 Identities=10% Similarity=-0.007 Sum_probs=61.5
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~ 143 (622)
||||||||.+.|.+.+. .|++ .++.+|+ ++..++..+........... +.....+.
T Consensus 8 ~GsGKSTl~~~l~~~l~-----~~~~---------------~v~~~D~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 63 (198)
T cd02023 8 SGSGKTTVAEEIIEQLG-----NPKV---------------VIISQDS-YYKDLSHEELEERKNNNYDH---PDAFDFDL 63 (198)
T ss_pred CCCCHHHHHHHHHHHhC-----CCCe---------------EEEEecc-cccccccccHHHhccCCCCC---CCcccHHH
Confidence 58999999999999872 2222 3333432 22223333332221111110 00111223
Q ss_pred HHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 144 v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
..+.++.+...+..+.+.-+ .|.|++++..+ .+.+|+++++|+|..+.++
T Consensus 64 ~~~~l~~l~~~~~~~~p~~d--------~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 64 LISHLQDLKNGKSVEIPVYD--------FKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred HHHHHHHHHCCCCEeccccc--------cccCcccCCce---ecCCCCEEEEechhhccch
Confidence 34666777665555555444 88888876655 5688999999999999986
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=5.9e-05 Score=89.60 Aligned_cols=68 Identities=24% Similarity=0.145 Sum_probs=51.8
Q ss_pred ccChHHHHHHHHHHHHhh--CCCeEEEeCC---CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 171 VLSGGERKRLSFATELLT--DPALLLCDEP---TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~--~P~lLlLDEP---TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
|+|-=+.....++..|-. +++++|+||| |+.+|..+ ....+++.+.+..|.+++++||.. ++.+++++
T Consensus 666 g~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~--el~~l~~~ 738 (854)
T PRK05399 666 GRSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYH--ELTELEEK 738 (854)
T ss_pred CcccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHH--HHHHHHHHHHhcCCceEEEEechH--HHHHHhhh
Confidence 377777777777777665 8999999999 99999444 456677777763468999999984 77778775
|
|
| >PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.70 E-value=7.7e-05 Score=65.39 Aligned_cols=47 Identities=13% Similarity=0.236 Sum_probs=41.3
Q ss_pred CCccChHHHHh-hcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhhcc
Q psy2519 573 PCLEDGAQVIN-NMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMKSR 619 (622)
Q Consensus 573 ~c~~~g~~~L~-~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~~~ 619 (622)
...++|+++|+ .++++.+|+|+|++|+++|+++|.++.++++.+.+.
T Consensus 28 ~~~V~G~~YL~~~y~y~~sh~WRN~GIli~f~i~f~~~~~~~~e~~~~ 75 (103)
T PF06422_consen 28 STYVSGDDYLEESYGYSYSHRWRNFGILIAFWIFFIVLTLLATEFIKF 75 (103)
T ss_pred ccEEeHHHHHhhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 34459999997 799999999999999999999999999999876544
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00074 Score=80.29 Aligned_cols=51 Identities=18% Similarity=0.227 Sum_probs=44.3
Q ss_pred HHhhCCCeEEEeCCCCCCC-HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 185 ELLTDPALLLCDEPTTGLD-SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 185 aL~~~P~lLlLDEPTsgLD-~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
.+..+|+++++|||...|| +..+..+.+.++++.+ .|..++++||++ +++.
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK-~~~~~i~~TQ~~-~d~~ 689 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRK-LNTFVIFATQSV-EDAS 689 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHH
Confidence 3557899999999999999 8999999999999987 788999999997 3443
|
|
| >cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.0018 Score=66.62 Aligned_cols=55 Identities=7% Similarity=0.094 Sum_probs=40.0
Q ss_pred HHHHHHHHHHh--hCCCeEEEeCCCCCCCH-------H-HHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 177 RKRLSFATELL--TDPALLLCDEPTTGLDS-------F-SASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 177 rqRvsIA~aL~--~~P~lLlLDEPTsgLD~-------~-~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.+-+..++.++ .+|+++++|..+.-.+. . ...+++..|++++++.|.||++++|-
T Consensus 126 ~~i~~~i~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~~L~~la~~~~vtvll~sq~ 190 (271)
T cd01122 126 DSVLEKVRYMAVSHGIQHIIIDNLSIMVSDERASGDERKALDEIMTKLRGFATEHGIHITLVSHL 190 (271)
T ss_pred HHHHHHHHHHHhcCCceEEEECCHHHHhccCCCchhHHHHHHHHHHHHHHHHHHhCCEEEEEecc
Confidence 34445555555 47999999998764432 1 24567788999988889999999985
|
Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands. |
| >TIGR00416 sms DNA repair protein RadA | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00022 Score=79.00 Aligned_cols=63 Identities=16% Similarity=0.193 Sum_probs=46.3
Q ss_pred hCCCeEEEeCCCCCC---------CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH-------HHHhhccceeeecCCc
Q psy2519 188 TDPALLLCDEPTTGL---------DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-------ELIDMFDKIILLADSR 250 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL---------D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-------~i~~~~D~v~~L~~G~ 250 (622)
.+|+++++|.-++=. +....+++...|.+++++.|.|+++++|...+ .+.+++|.|+.|+.++
T Consensus 169 ~~~~~vVIDSIq~l~~~~~~~~~g~~~q~r~~~~~L~~~ak~~giTvllt~hvtkeg~~aG~~~le~lvD~VI~Le~~~ 247 (454)
T TIGR00416 169 ENPQACVIDSIQTLYSPDISSAPGSVSQVRECTAELMRLAKTRGIAIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGDR 247 (454)
T ss_pred cCCcEEEEecchhhcccccccCCCCHHHHHHHHHHHHHHHHHhCCEEEEEeccccCCccCCcccEeeeceEEEEEeccC
Confidence 478999999765421 12345667777888888889999999996422 2677899999997654
|
The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)). |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00028 Score=81.07 Aligned_cols=111 Identities=18% Similarity=0.174 Sum_probs=68.5
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-----ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-----~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..+++.|++ |+|||||.+++.+..++.. ...+-|.++|..+....+ ..++-.+
T Consensus 176 ~~vlL~Gp~-----GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~-----------------~i~~~ll 233 (615)
T TIGR02903 176 QHIILYGPP-----GVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPR-----------------EVTNPLL 233 (615)
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHH-----------------HHhHHhc
Confidence 345555554 8999999999998875410 012335555543311000 0011111
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
+. .. +...+.+.+.++..|+.+..+..+.. +||| +|+||| +..||+.
T Consensus 234 g~-------~~-~~~~~~a~~~l~~~gl~~~~~g~v~~--------asgG----------------vL~LDE-i~~Ld~~ 280 (615)
T TIGR02903 234 GS-------VH-DPIYQGARRDLAETGVPEPKTGLVTD--------AHGG----------------VLFIDE-IGELDPL 280 (615)
T ss_pred CC-------cc-HHHHHHHHHHHHHcCCCchhcCchhh--------cCCC----------------eEEEec-cccCCHH
Confidence 10 01 11122345567888988777776655 8988 999999 8999999
Q ss_pred HHHHHHHHHHH
Q psy2519 206 SASKLIRMMRE 216 (622)
Q Consensus 206 ~~~~i~~~l~~ 216 (622)
.+..+.+.+++
T Consensus 281 ~Q~~Ll~~Le~ 291 (615)
T TIGR02903 281 LQNKLLKVLED 291 (615)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.003 Score=68.20 Aligned_cols=79 Identities=23% Similarity=0.336 Sum_probs=65.1
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCC-----CHHHHHHH----------HHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGL-----DSFSASKL----------IRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgL-----D~~~~~~i----------~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
=||..-|=.+|..||=...++||+||=||+- |...+.-+ .+.++++.++.|.+.|+|+-- +...
T Consensus 323 ASGSTSqAAnI~EAlE~Ga~~LLiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Gg-sgdy 401 (448)
T PF09818_consen 323 ASGSTSQAANIMEALEAGARLLLIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGG-SGDY 401 (448)
T ss_pred CCchHHHHHHHHHHHHcCCCEEEEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEecc-chhh
Confidence 7999999999999999999999999999964 33334444 566788877789988888876 5688
Q ss_pred HhhccceeeecCCce
Q psy2519 237 IDMFDKIILLADSRT 251 (622)
Q Consensus 237 ~~~~D~v~~L~~G~i 251 (622)
++.+|+|++|++=+.
T Consensus 402 ~~vAD~Vi~Md~Y~~ 416 (448)
T PF09818_consen 402 FDVADRVIMMDEYRP 416 (448)
T ss_pred HhhCCEEEEecCccc
Confidence 899999999987554
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases. |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00042 Score=85.60 Aligned_cols=38 Identities=8% Similarity=0.145 Sum_probs=28.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.+.|.|++ |+|||||++.+.+..... .+|.+.+++.
T Consensus 207 ~~vvgI~G~g-----GiGKTTLA~~l~~~l~~~--F~g~vfv~~~ 244 (1153)
T PLN03210 207 VRMVGIWGSS-----GIGKTTIARALFSRLSRQ--FQSSVFIDRA 244 (1153)
T ss_pred eEEEEEEcCC-----CCchHHHHHHHHHHHhhc--CCeEEEeecc
Confidence 3445555554 899999999998877653 4799988764
|
syringae 6; Provisional |
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.00059 Score=73.53 Aligned_cols=62 Identities=15% Similarity=0.244 Sum_probs=45.0
Q ss_pred hCCCeEEEeCCC----CCCC-----HHHHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhccceeeecCC
Q psy2519 188 TDPALLLCDEPT----TGLD-----SFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMFDKIILLADS 249 (622)
Q Consensus 188 ~~P~lLlLDEPT----sgLD-----~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~D~v~~L~~G 249 (622)
.+|+++++|+-. ..+| ....+++...|.+++++.|.|++++.|-.. ..+.+++|-|+.+...
T Consensus 157 ~~~~lVVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak~~~itvilvghvtk~g~~aG~~~leh~vD~Vi~le~~ 234 (372)
T cd01121 157 LKPDLVIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAKERNIPIFIVGHVTKEGSIAGPKVLEHMVDTVLYFEGD 234 (372)
T ss_pred cCCcEEEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccCCCcccCcccchhhceEEEEEEcC
Confidence 479999999963 2333 234456677788888888999999999522 1367889999988643
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0022 Score=62.20 Aligned_cols=65 Identities=20% Similarity=0.167 Sum_probs=44.9
Q ss_pred HHHHHHHHhCCC-cccCCccCCcCCCCccccChHHHHHHH--HHHHHhh-CCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2519 143 LINSLLIELGLM-NSQHTRIGSSSITQKVVLSGGERKRLS--FATELLT-DPALLLCDEPTTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 143 ~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgGqrqRvs--IA~aL~~-~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~ 218 (622)
.+.+.++..++. -...+++.. +|+||+|++. +++.+-. ++++ .|+|++|.....++.+.|.++.
T Consensus 126 ~i~~~l~~~~~~~iiv~nK~Dl--------~~~~~~~~~~~~i~~~l~~~~~~~----~~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 126 QMIEWLKEYGIPVLIVLTKADK--------LKKGERKKQLKKVRKALKFGDDEV----ILFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHHcCCcEEEEEECccc--------CCHHHHHHHHHHHHHHHHhcCCce----EEEEcCCCCCHHHHHHHHHHHh
Confidence 344556666654 223334444 8999999987 5555443 3343 3999999999999999999987
Q ss_pred h
Q psy2519 219 S 219 (622)
Q Consensus 219 ~ 219 (622)
+
T Consensus 194 ~ 194 (196)
T PRK00454 194 A 194 (196)
T ss_pred c
Confidence 6
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00013 Score=70.42 Aligned_cols=65 Identities=8% Similarity=0.021 Sum_probs=43.6
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc--c-cccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK--F-RSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~--~-r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
|+.+.+.|++ |||||||+++|+|++.+ +.++|.++... . +...|+.+|+....++.++.+++.+.
T Consensus 3 ge~i~l~G~s-----GsGKSTl~~~la~~l~~-------~~i~gd~~~~~~~~r~~~~g~~~~~~~~~~~~~~~~~~~~~ 70 (176)
T PRK09825 3 GESYILMGVS-----GSGKSLIGSKIAALFSA-------KFIDGDDLHPAKNIDKMSQGIPLTDEDRLPWLERLNDASYS 70 (176)
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHhcCC-------EEECCcccCCHhHHHHHhcCCCCCcccchHHHHHHHHHHHH
Confidence 4455555554 89999999999998765 36777776431 2 22356777776556666666666654
|
|
| >PRK13764 ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0012 Score=75.00 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=49.3
Q ss_pred HhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec---------------cCcHHHHhhccceeeecCCc
Q psy2519 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH---------------QPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 186 L~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH---------------~~~~~i~~~~D~v~~L~~G~ 250 (622)
|..+|+++++||.-..-| ++.+..++. .|..++.|.| ++ ..+...+|+++.+++|+
T Consensus 321 LR~rPD~IivGEiRd~Et-------~~~~~~l~~-ag~GvigTlHA~sa~~Ai~Rl~~~v~l-g~i~~iID~IV~I~~G~ 391 (602)
T PRK13764 321 LLVRPDYTIYDEMRKTED-------FKIFADMRL-AGVGMVGVVHATRPIDAIQRFIGRVEL-GMIPQIVDTVIFIEDGE 391 (602)
T ss_pred HhhCCCEEEECCCCCHHH-------HHHHHHHHH-cCCeEEEEECCCCHHHHHHHHHhhhhh-chHHHhhcEEEEEeCCE
Confidence 678899999999985322 445555554 5778999999 64 46778899999999999
Q ss_pred e--EEecChH
Q psy2519 251 T--AFIGSKD 258 (622)
Q Consensus 251 i--v~~G~~~ 258 (622)
+ +++++..
T Consensus 392 I~~v~~~~~~ 401 (602)
T PRK13764 392 VSKVYDLEFT 401 (602)
T ss_pred EEEEEeeeeE
Confidence 9 7777643
|
|
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.00062 Score=74.53 Aligned_cols=109 Identities=17% Similarity=0.093 Sum_probs=68.2
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC---EecCc----cc---c
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG---KPVEG----KF---R 101 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G---~~~~~----~~---r 101 (622)
+.+++++ +.+ ++|++..++|++ |+|||||+++|+|..++. ..|.|.+.| +++.. .+ .
T Consensus 152 i~aID~~-l~i-----~~Gq~i~I~G~s-----G~GKStLl~~I~~~~~~~--~~~vi~liGerg~ev~~~~~~~l~~~g 218 (442)
T PRK06315 152 VRCIDGM-LTV-----ARGQRIGIFAGA-----GVGKSSLLGMIARNAEEA--DVNVIALIGERGREVREFIEGDLGEEG 218 (442)
T ss_pred EEEEecc-ccc-----cCCcEEEEECCC-----CCCcchHHHHhhcccccC--CceEEEEECCCchHHHHHHHHHHHhcC
Confidence 4556665 566 577788888776 899999999999988542 247777745 55432 11 2
Q ss_pred ccEEEE-----ecCC--CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC
Q psy2519 102 SACGFM-----YQHD--LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 154 (622)
Q Consensus 102 ~~igyV-----~Q~~--~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 154 (622)
.+.+++ +|++ .+.|.+ +...++-..+.+........+...+..+++++++|.
T Consensus 219 ~~~svvvvats~q~p~~rlnp~~-va~~IAE~~r~~g~~Vl~~~Ds~tR~a~alreV~L~ 277 (442)
T PRK06315 219 MKRSVIVVSTSDQSSQLRLNAAY-VGTAIAEYFRDQGKTVVLMMDSVTRFARALREVGLA 277 (442)
T ss_pred CceEEEEEeCCCCCHHHHhhHHH-HHHHHHHHHHHcCCCcchhhhHHHHHHHHHHHhCcC
Confidence 334555 8875 355554 555554444333211112345667888999999994
|
|
| >COG1277 NosY ABC-type transport system involved in multi-copper enzyme maturation, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.05 Score=56.03 Aligned_cols=250 Identities=18% Similarity=0.188 Sum_probs=145.5
Q ss_pred HHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHhh-cCC--CC-ChhhHHHHHHHHHHHHHHHHHHhHHHHHhhhh
Q psy2519 347 IIYVLISRSFLNVVRDPAIQLSKLFQKVATALMCGLCFA-GSI--DL-TQRGVQSVQGALFIMVTENTFSPMYSVLSQFP 422 (622)
Q Consensus 347 Q~~~L~~R~~~~~~Rd~~~~~~r~~~~~~~~l~~G~~f~-~~~--~~-~~~~~~~~~g~lf~~~~~~~~~~~~~~~~~f~ 422 (622)
++..+.+++++...|+|.....-....+..++.....+. ... ++ ....-+.. ....+......+.+.+.. +.
T Consensus 3 ~~~~i~~~e~~~~~~s~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~l 78 (278)
T COG1277 3 NILVIAQKEFQKYLRSKRFYILLAIFLLFAGIVLLLALKYLLILSKLLEGNPFLLL-FLSSVSLVFSFFLPLLAI---LL 78 (278)
T ss_pred hhhHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHhccccccccCcchhhh-hhhhHHHHHHHHHHHHHH---HH
Confidence 577889999999999998876655444555555555552 110 10 11111111 121122222222222222 21
Q ss_pred hhhhHHHHHhcCCC--------cChHHHHHHHHHHHHHHHHHHHHHHH---hhhhhccCCcc---cHHHHHHHHHHHHHH
Q psy2519 423 DMLPLFHREYSSGL--------YSAFQFYLSYILSSLPGLIIQAVLFT---VILYWISGLRN---SLSVFLMAVLICILI 488 (622)
Q Consensus 423 ~er~v~~rE~~~g~--------Y~~~~y~la~~l~~lp~~~~~~~~f~---~i~Y~~~gl~~---~~~~f~~f~~~~~l~ 488 (622)
. -.++.+|+.+|. .++..-+++|.++-+-..++..++.. ...+...|..+ +...+..+....++.
T Consensus 79 ~-~~~is~E~~~gTi~~Lls~PisR~~Iv~gK~i~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~ 157 (278)
T COG1277 79 G-ADLISSEFESGTIKLLLSKPISRSNIVLGKFLGALLVILIIILISFISLLTLLLLFGFPGNVSSISRLLLFLGSSLLY 157 (278)
T ss_pred c-cchhhccCCcchHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH
Confidence 1 356777777775 56677788998888765544444433 22333344443 344567777777888
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHhhhHHHHHHHHhheeeeec-----CCCCCccchhhhccCHHHHHHHHHHHHHhCCCcc
Q psy2519 489 INVATSCGIMFSLAFSSVSTAMACLVPFDYTLMITAGVFYK-----LSSLPPYFVWIRYLSWLEYSNEALTITQWQGVTN 563 (622)
Q Consensus 489 ~~~~~s~g~~i~~~~~~~~~a~~~~~~~~~~~~lf~Gf~v~-----~~~ip~~~~Wl~ylS~~~Ya~eal~~nef~~~~~ 563 (622)
..+..+++.+++....+...+..++-.+...+.+..+.... .....+....+.+.+|..+..+......... ..
T Consensus 158 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~ 236 (278)
T COG1277 158 GLVLLSISLLISSLFSSSSLALLVSIILLLLFIIAFSLILLFISVLLIGIAPTLNTLSLLLPLYLLAELAFTILLQS-GF 236 (278)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHhccCHHHHHHHHhhhhcccc-cc
Confidence 88888999999999998888877776666655544433322 1112225677888899988888765432210 00
Q ss_pred cccCCCCCCCCccChHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHhh
Q psy2519 564 ITCFDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMVVLYFAFHTLAFLFLLMK 617 (622)
Q Consensus 564 ~~C~~~~~~~c~~~g~~~L~~~~~~~~~~~~~~~il~~~~~~f~~l~~~~L~~~ 617 (622)
.+. ...........|.++.+++++.+++..++++..+++
T Consensus 237 ----~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~r~ 275 (278)
T COG1277 237 ----SDS-----------ILTLNESLLLAWFNILILIIYILIFLSIAYLIFKRR 275 (278)
T ss_pred ----ccc-----------cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 000 000111223467889999999999999988776654
|
|
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00039 Score=64.84 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=32.4
Q ss_pred cChHHHHHHHHHHHHh-----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 172 LSGGERKRLSFATELL-----TDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~-----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
++++++++.....+.. ..|+++ |+|++|.....++.+.|.++
T Consensus 123 ~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 123 LKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred CChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 7889888876665533 345555 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.00071 Score=80.74 Aligned_cols=70 Identities=19% Similarity=0.237 Sum_probs=55.7
Q ss_pred HHHHHhhCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh--hccceeeecCCceEE
Q psy2519 182 FATELLTDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID--MFDKIILLADSRTAF 253 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~--~~D~v~~L~~G~iv~ 253 (622)
|++++..+|+++++|||+.+| |+..+..+.+.++++++ .|.+++++||++ +++.+ .++.++-..+.++..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK-~g~~vil~TQs~-~d~~~s~i~~~ilen~~t~I~L 752 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRK-ANCLVLMATQSL-SDAANSGILDVIVESTATKIFL 752 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHhhCchHHHHHHcCCcceec
Confidence 677888999999999999999 79999999999999987 688999999997 45544 344444444455543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 622 | ||||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-08 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-08 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 2e-08 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-08 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-08 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 4e-08 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-08 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-07 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 1e-07 | ||
| 1g29_1 | 372 | Malk Length = 372 | 1e-07 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 1e-07 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 2e-07 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 2e-07 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 5e-07 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-07 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 6e-07 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 8e-07 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 9e-07 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 9e-07 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 1e-06 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-06 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-06 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 2e-06 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-06 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-06 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-06 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-06 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 2e-06 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-06 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-06 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 4e-06 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 4e-06 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 4e-06 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 5e-06 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-06 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-06 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 3e-05 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 3e-05 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 3e-05 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-05 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-04 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-04 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-04 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-04 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 3e-04 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 3e-04 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 4e-04 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 4e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 5e-04 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 5e-04 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 5e-04 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 6e-04 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-04 |
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 3e-22
Identities = 31/161 (19%), Positives = 68/161 (42%), Gaps = 20/161 (12%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
G+I NG P+ K + F+ + + ++V ++L +A L + K I
Sbjct: 63 KGEIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNE-----IM 116
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
L + +++ ++G LS G +R+ A+ LL + + + D+P +D
Sbjct: 117 DALESVEVLD-LKKKLGE--------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDED 167
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
S K+++ + E+ ++ ++ + E + D L
Sbjct: 168 SKHKVLKSILEILKEKGIVIISS-----REELSYCDVNENL 203
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 3e-21
Identities = 33/148 (22%), Positives = 64/148 (43%), Gaps = 15/148 (10%)
Query: 86 DGDIRVNGKPVE---GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G + V GK V + R ++ + ++ E+L F+A + +
Sbjct: 69 SGIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGF---YASSSSEIEE 125
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
++ GL R+ + S G ++L A L+ +P L + DEPT+GL
Sbjct: 126 MVERATEIAGLGEKIKDRVST--------YSKGMVRKLLIARALMVNPRLAILDEPTSGL 177
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIH 230
D +A ++ +++++ SQ T+L + H
Sbjct: 178 DVLNAREVRKILKQA-SQEGLTILVSSH 204
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 2e-18
Identities = 43/188 (22%), Positives = 75/188 (39%), Gaps = 23/188 (12%)
Query: 87 GDIRVNGKPVEGKF-------RSACGFMYQ--HDLFSPSLTVYEHLY--FMALLKLDRRV 135
G + + GK GK R GF+ + F V + + + + + +
Sbjct: 76 GTVNLFGKMP-GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDI 134
Query: 136 KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
R + LL +G+ IG LS GE++R+ A L+ P +L+
Sbjct: 135 DDEIR-NEAHQLLKLVGMSAKAQQYIGY--------LSTGEKQRVMIARALMGQPQVLIL 185
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKK-TVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
DEP GLD + L+ ++ L+ ++ H E+ F KI+LL D ++
Sbjct: 186 DEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFI-EEITANFSKILLLKDGQSIQQ 244
Query: 255 GSKDAALA 262
G+ + L
Sbjct: 245 GAVEDILT 252
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 6e-14
Identities = 35/176 (19%), Positives = 62/176 (35%), Gaps = 24/176 (13%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQH-DLFSPSLTVYEHLYF-MALLKLDRRVKAYQRIAL 143
G+I +NG V K R+ + + + +TV + +Y L LDR L
Sbjct: 57 SGNIFINGMEVR-KIRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD--------L 107
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+L L L R + + LS G+ + + L + P ++ DEP +D
Sbjct: 108 FLEMLKALKLGEEILRR----KLYK---LSAGQSVLVRTSLALASQPEIVGLDEPFENVD 160
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL-ADSRTAFIGSKD 258
+ + R ++E K + H+ L + +R S
Sbjct: 161 AARRHVISRYIKEY----GKEGILVTHE-LDMLNLYKEYKAYFLVGNRLQGPISVS 211
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 68.9 bits (169), Expect = 2e-12
Identities = 39/135 (28%), Positives = 56/135 (41%), Gaps = 17/135 (12%)
Query: 94 KPVEGKFRSACGFMY--QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL 151
+P EGK Y Q+ TVYE L + KL+ LL L
Sbjct: 407 EPTEGKVEWDLTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSN-------FYKTELLKPL 459
Query: 152 GLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211
G+++ + LSGGE +R++ A LL D + L DEP+ LD +
Sbjct: 460 GIIDLYDRNVED--------LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVS 511
Query: 212 RMMRELTSQRKKTVL 226
R +R L + +KT L
Sbjct: 512 RAIRHLMEKNEKTAL 526
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 3e-10
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL DEP++ LD K+ R++R L + K VL
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRL-ANEGKAVL 282
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 66.4 bits (163), Expect = 2e-12
Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+ + A + ++ L+L DEPT+ LD + ++ ++ +L + TV+ T HQ
Sbjct: 129 LSGGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQ 188
Query: 232 PSSELIDMFDKIILLADSRTAF 253
P+ + + +K +LL F
Sbjct: 189 PNQVV-AIANKTLLLNKQNFKF 209
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 68.1 bits (167), Expect = 4e-12
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ L + L DEP+ LDS +++R KKT
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAF 522
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 23/121 (19%), Positives = 49/121 (40%), Gaps = 10/121 (8%)
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
+++ + + + L L + I + LSGGE +R + + + +
Sbjct: 191 LKLRMEKSPEDVKRYIKILQL-----ENVLKRDIEK---LSGGELQRFAIGMSCVQEADV 242
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252
+ DEP++ LD +++R L K V+C H S L + D + ++ +
Sbjct: 243 YMFDEPSSYLDVKQRLNAAQIIRSLL-APTKYVICVEHDL-SVLDYLSDFVCIIYGVPSV 300
Query: 253 F 253
+
Sbjct: 301 Y 301
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 65.3 bits (160), Expect = 4e-12
Identities = 41/172 (23%), Positives = 77/172 (44%), Gaps = 21/172 (12%)
Query: 87 GDIRVNGKPVEG-------KFRSAC-GFMYQ--HDLFSPSLTVYEHLYFMALLKLDRRVK 136
G++ ++ K R GF++Q + + P LT E++ + K +
Sbjct: 60 GEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLI--PLLTALENVELPLIFKYRGAMS 117
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+R L L R + Q LSGG+++R++ A L +P ++L D
Sbjct: 118 GEERRKRALECLKMAELEE----RFANHKPNQ---LSGGQQQRVAIARALANNPPIILAD 170
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
+PT LDS + K+++++++L + KTV+ H + ++II L D
Sbjct: 171 QPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKD 220
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 67.7 bits (166), Expect = 5e-12
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 25/162 (15%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
+G + + + + Q + TV + L+ +
Sbjct: 322 EGSVTPEKQIL--------SYKPQRIFPNYDGTVQQ------YLENASKDALSTSSWFFE 367
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+ L L + + LSGGE ++L A L + L + D+P++ LD
Sbjct: 368 EVTKRLNLHRLLESNVND--------LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILL 246
+ + ++ +T +RK H + D D+II+
Sbjct: 420 ERYIVAKAIKRVTRERKAVTFIIDHDL--SIHDYIADRIIVF 459
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 32/154 (20%), Positives = 58/154 (37%), Gaps = 22/154 (14%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEH---------LYFMALLKLDRRVK 136
D + +V V +FR + Y +L+S L + + ++ ++
Sbjct: 55 DPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 137 AYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCD 196
+ + LL L N LSGG +RL A LL + + + D
Sbjct: 115 ERGKKDEVKELLNMTNLWNK--------DANI---LSGGGLQRLLVAASLLREADVYIFD 163
Query: 197 EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230
+P++ LD + + +REL + K V+ H
Sbjct: 164 QPSSYLDVRERMNMAKAIREL--LKNKYVIVVDH 195
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 65.6 bits (161), Expect = 5e-12
Identities = 40/185 (21%), Positives = 80/185 (43%), Gaps = 35/185 (18%)
Query: 87 GDIRVNGKPVEGK------FRSACGFMYQ---HDLFSPSLTVYEHLYF------MALLKL 131
G I + KP++ R + G ++Q + LFS +VY+ + F + ++
Sbjct: 63 GRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA--SVYQDVSFGAVNMKLPEDEI 120
Query: 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA 191
+RV L G+ + LS G++KR++ A L+ +P
Sbjct: 121 RKRVDNA---------LKRTGI-----EHLKDKPTHC---LSFGQKKRVAIAGVLVMEPK 163
Query: 192 LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251
+L+ DEPT GLD S++++++ E+ + T++ H + D + ++ + R
Sbjct: 164 VLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEGRV 222
Query: 252 AFIGS 256
G+
Sbjct: 223 ILQGN 227
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 64.4 bits (158), Expect = 7e-12
Identities = 46/176 (26%), Positives = 79/176 (44%), Gaps = 32/176 (18%)
Query: 86 DGDIRVNGKPVEG-------KFRS-ACGFMYQ-HDLFSPSLTVYEH----LYFMALLKLD 132
+G + + GK V+ R+ GF++Q H L P LT E+ + M K +
Sbjct: 58 EGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLI-PELTALENVIVPMLKMGKPKKE 116
Query: 133 RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPAL 192
+ + LL ELGL + + LSGGE++R++ A L +P L
Sbjct: 117 AKERGEY-------LLSELGLGDKLSRKPYE--------LSGGEQQRVAIARALANEPIL 161
Query: 193 LLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248
L DEPT LDS + +++ + ++ V+ T H+ EL ++ + + + D
Sbjct: 162 LFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVT-HER--ELAELTHRTLEMKD 214
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 62.6 bits (153), Expect = 4e-11
Identities = 38/187 (20%), Positives = 66/187 (35%), Gaps = 31/187 (16%)
Query: 87 GDIRVNGKPVEGKFRSA----CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G I+ G+P+E + ++ Q + V+ L L + R
Sbjct: 54 GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWH------YLTLHQH--DKTRTE 105
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-------TELLTDPALLLC 195
L+N + L L + LSGGE +R+ A + LLL
Sbjct: 106 LLNDVAGALALDDKLGRSTNQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLLL 157
Query: 196 DEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF-DKIILLADSRTAFI 254
DEP LD S L +++ L+ Q+ ++ + H + + LL +
Sbjct: 158 DEPMNSLDVAQQSALDKILSALS-QQGLAIVMSSHDLN--HTLRHAHRAWLLKGGKMLAS 214
Query: 255 GSKDAAL 261
G ++ L
Sbjct: 215 GRREEVL 221
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 61.1 bits (149), Expect = 2e-10
Identities = 42/190 (22%), Positives = 84/190 (44%), Gaps = 22/190 (11%)
Query: 87 GDIRVNGKPVEGK-FRSACGFMYQ---HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
GD+ +G+ +G R G +Q F+ V++ + F A+ +
Sbjct: 62 GDVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE--RVFDEVAF-AVKNFYPDRDPVPLV- 117
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVV--LSGGERKRLSFATELLTDPALLLCDEPTT 200
+ +GL S +V LSGGE++R++ A+ ++ +P +L+ DEP
Sbjct: 118 --KKAMEFVGL--------DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 201 GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAA 260
GLD + L+R++ + KTV+ H +I+ D++++L + F G++
Sbjct: 168 GLDREGKTDLLRIVEKW-KTLGKTVILISHDI-ETVINHVDRVVVLEKGKKVFDGTRMEF 225
Query: 261 LAFLESQGYP 270
L + + +
Sbjct: 226 LEKYDPRFFT 235
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 5e-10
Identities = 22/55 (40%), Positives = 31/55 (56%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL D + L DEP+ LD + R +R L + +KT L
Sbjct: 402 LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTAL 456
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 58.1 bits (141), Expect = 5e-09
Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVL 226
LSGGE +R++ A LL + DEP++ LD R +R L S+ K+VL
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRL-SEEGKSVL 212
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 55.1 bits (133), Expect = 3e-09
Identities = 30/117 (25%), Positives = 41/117 (35%), Gaps = 16/117 (13%)
Query: 134 RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL------L 187
K + + + L + LSGGER L A L
Sbjct: 27 EGKYSEVVVRAEENKVRLFV---VWEGKERPLTF----LSGGERIALGLAFRLAMSLYLA 79
Query: 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
+ +LL+ DEPT LD KLI +M + V+ H EL D D +I
Sbjct: 80 GEISLLILDEPTPYLDEERRRKLITIMERYLKK-IPQVILVSHDE--ELKDAADHVI 133
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 3e-09
Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 172 LSGGERKRLSFATEL------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225
LSGGER L A L + +LL+ DEPT LD KLI +M + + +
Sbjct: 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 308
Query: 226 LCTIHQPSSELIDMFDKIILL 246
L + H EL D D +I +
Sbjct: 309 LVS-HDE--ELKDAADHVIRI 326
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 56.2 bits (135), Expect = 2e-08
Identities = 30/110 (27%), Positives = 47/110 (42%), Gaps = 17/110 (15%)
Query: 144 INSLLIELGLM--NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
I LGL H+RI LSGG++ +L A P L++ DEPT
Sbjct: 880 IEEHCSMLGLDPEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSR 250
LD S L + ++E + V+ H S+E + +++ + D R
Sbjct: 932 LDRDSLGALSKALKEF----EGGVIIITH--SAEFTKNLTEEVWAVKDGR 975
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 55.8 bits (134), Expect = 3e-08
Identities = 21/68 (30%), Positives = 28/68 (41%), Gaps = 9/68 (13%)
Query: 137 AYQRIALINSLLIELGL-MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLC 195
I LIE G I + LSGG + +L+ A +L + +LL
Sbjct: 521 GVGTKEAIKDKLIEFGFTDEMIAMPISA--------LSGGWKMKLALARAVLRNADILLL 572
Query: 196 DEPTTGLD 203
DEPT LD
Sbjct: 573 DEPTNHLD 580
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 1e-07
Identities = 25/91 (27%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGE++R++ A +L P ++L DE T+ LD+ + + + ++ + R T + H+
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANR--TTIVVAHR 248
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ + D+I+++ D G +A L+
Sbjct: 249 LST--VVNADQILVIKDGCIVERGRHEALLS 277
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.8 bits (123), Expect = 5e-07
Identities = 62/382 (16%), Positives = 112/382 (29%), Gaps = 95/382 (24%)
Query: 121 EHLYFMALLKLD-----RRVKAYQ---RIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172
Y LL L + A+ +I LL TR +T L
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKI-----LLT---------TR--FKQVTD--FL 281
Query: 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKT---VLCT 228
S +S L ++ L + L K + ++L + T L
Sbjct: 282 SAATTTHIS-----LDHHSMTLTPDEVKSL--LL--KYLDCRPQDLPREVLTTNPRRLSI 332
Query: 229 IHQPSSELIDMFDKII----LLADSRTAFIGSKDAALAFLESQGYPCPYGYN-----PAD 279
I + + D + D T I S L E + ++ P
Sbjct: 333 I---AESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----FDRLSVFPPS 384
Query: 280 FLI--KSLAV-----TTND------ELSSRRRLKRICDEFSV----CDFAKEVDLEINYQ 322
I L++ +D +L +++ E ++ +V LE Y
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 323 TH---VGTYDFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDPAIQL-SKLF------- 371
H V Y+ F+S + P+ Y I N+ + L +F
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLE 504
Query: 372 QKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMYSVLSQFPDMLP----- 426
QK+ ++ Q+ ++ + +I + + + + + F LP
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQ-LKFYKP--YICDNDPKYERLVNAILDF---LPKIEEN 558
Query: 427 LFHREYSSGLYSAFQFYLSYIL 448
L +Y+ L A I
Sbjct: 559 LICSKYTDLLRIALMAEDEAIF 580
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 50.2 bits (119), Expect = 2e-06
Identities = 63/394 (15%), Positives = 124/394 (31%), Gaps = 129/394 (32%)
Query: 257 KDAALAFLES--QGYPCPYGYNPADFL--------IKSLAVTTNDELSSRRRLKRICD-- 304
KD F ++ + C + D I + ++ + + R +
Sbjct: 19 KDILSVFEDAFVDNFDC---KDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 305 EFSVCDFAKEVDLEINYQTHVGTYDFLADFNSRKIKKPFWFTIIYV-LISRSF------- 356
E V F +EV L INY FL + ++P T +Y+ R +
Sbjct: 76 EEMVQKFVEEV-LRINY-------KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFA 127
Query: 357 -LNVVR-DPAIQLSKLFQKVATA---LMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTF 411
NV R P ++L + ++ A L+ G+ GS G ++ + + V +
Sbjct: 128 KYNVSRLQPYLKLRQALLELRPAKNVLIDGV--LGS------G-KTW---VALDVCLS-- 173
Query: 412 SPMYSVLSQFPDMLPLFHREYSSGLYSAFQFYLSYILSSLPGLII---QAVLFTVILYWI 468
Y V + + F+L+ + P ++ Q +L+ + W
Sbjct: 174 ---YKVQCKMDFKI----------------FWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 469 SG-------------LRNSLSVFLMAVL--ICILII-NVATSCGIMFSLAFSSVSTAMAC 512
S ++ L L + C+L++ NV +
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA----------------KA 258
Query: 513 LVPFDY---TLMIT--AGVFYKLSSLPPYFVWIRYLSWLEYSNEALTI-TQWQGVTNITC 566
F+ L+ T V LS+ + + + S +E ++ ++
Sbjct: 259 WNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDC----- 313
Query: 567 FDNPDLPCLEDGAQVINNMNFSPDNLYPNLIAMV 600
DLP E N P ++++
Sbjct: 314 -RPQDLP-RE--VLTTN----------PRRLSII 333
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 6e-05
Identities = 68/428 (15%), Positives = 129/428 (30%), Gaps = 129/428 (30%)
Query: 43 IMDQTASTSKTVILFKNNEEVPNV-----DFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97
+ D K+++ + EE+ ++ S +RLF ++ + K VE
Sbjct: 38 VQDMP----KSIL---SKEEIDHIIMSKDAVSGTLRLF------WTLLSKQEEMVQKFVE 84
Query: 98 GKFRSACGFM---YQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQ--RIALINSLLIEL 151
R F+ + + PS+ ++ L D + Y R+ L
Sbjct: 85 EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKL--RQ 142
Query: 152 GLMNSQHTR---------IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
L+ + + G + + V LS + ++ F L L C+ P T
Sbjct: 143 ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN---LKNCNSPET-- 197
Query: 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
++ M+++L Q I + D I L S +
Sbjct: 198 -------VLEMLQKLLYQ--------IDPNWTSRSDHSSNIKLRIHS------IQAELRR 236
Query: 263 FLESQGYP-C---------PYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFA 312
L+S+ Y C +N + K L +TT K++ D S
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL-LTTRF--------KQVTDFLSA-ATT 286
Query: 313 KEVDLEINYQ--THVGTYDFLADFNSRKIKK---------PFWFTIIYVLI----SRS-- 355
+ L+ + T L + + + P +II I +
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDN 346
Query: 356 FLNVVRDPAIQLSKLFQKVATALMCGLCFAGSIDLTQRGVQSVQGALFIMVTENTFSPMY 415
+ +V D +L+ + + S++ L + M+
Sbjct: 347 WKHVNCD---KLTTIIES-------------SLN-----------VL----EPAEYRKMF 375
Query: 416 SVLSQFPD 423
LS FP
Sbjct: 376 DRLSVFPP 383
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 7e-07
Identities = 39/153 (25%), Positives = 77/153 (50%), Gaps = 20/153 (13%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G + V+G+ + K R G ++QH +L S S TV+ ++ L+LD K
Sbjct: 83 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLS-SRTVFGNVAL--PLELDNTPKD- 138
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+ + LL +GL + + + LSGG+++R++ A L ++P +LLCD+
Sbjct: 139 EVKRRVTELLSLVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDQA 190
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
T+ LD + ++ +++++ + T+L H+
Sbjct: 191 TSALDPATTRSILELLKDINRRLGLTILLITHE 223
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 49.1 bits (118), Expect = 1e-06
Identities = 30/91 (32%), Positives = 48/91 (52%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGGER+R++ A LL DP +++ DE T+ LDS + + + +L R T++ H+
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNR--TLIIIAHR 213
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ I + IILL + G+ L
Sbjct: 214 LST--ISSAESIILLNKGKIVEKGTHKDLLK 242
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 5e-06
Identities = 46/179 (25%), Positives = 81/179 (45%), Gaps = 28/179 (15%)
Query: 86 DGDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA 142
G++R+NG + R GF+ Q LF P L+VY ++ + L R V+ +R
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALF-PHLSVYRNIAY-GL----RNVERVERDR 105
Query: 143 LINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
+ + +LG+ + + LSGGER+R++ A L+ P LLL DEP + +
Sbjct: 106 RVREMAEKLGIAHLLDRKPAR--------LSGGERQRVALARALVIQPRLLLLDEPLSAV 157
Query: 203 DSFSASKL-IRMMRELTSQRKKTVLCTIH----QPSSELIDMFDKIILLADSRTAFIGS 256
D K +M EL +++ + +H E + D++ ++ + R G
Sbjct: 158 D----LKTKGVLMEELRFVQREFDVPILHVTHDL--IEAAMLADEVAVMLNGRIVEKGK 210
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 6e-06
Identities = 36/126 (28%), Positives = 66/126 (52%), Gaps = 20/126 (15%)
Query: 86 DGDIRVNGKPVEG------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAY 138
+G+I ++G ++ K R G ++Q +LF P +TV ++ +A +K+ + +
Sbjct: 78 EGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLF-PHMTVLNNI-TLAPMKVRKWPREK 135
Query: 139 -QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+ A+ LL ++GL + H S LSGG+ +R++ A L +P ++L DE
Sbjct: 136 AEAKAM--ELLDKVGLKDKAHAYPDS--------LSGGQAQRVAIARALAMEPKIMLFDE 185
Query: 198 PTTGLD 203
PT+ LD
Sbjct: 186 PTSALD 191
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 46.7 bits (112), Expect = 8e-06
Identities = 29/163 (17%), Positives = 49/163 (30%), Gaps = 40/163 (24%)
Query: 87 GDIRVNGKPVEGK---FRSACG----FMYQH-DLFSPSLTVYE-----------HLYFMA 127
G + K + K G F Q +TV E
Sbjct: 62 GRVYFENKDITNKEPAELYHYGIVRTF--QTPQPLK-EMTVLENLLIGEICPGESPLNSL 118
Query: 128 LLKLDRRV-KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
K + A +L L L + + G LSGG+ K + L
Sbjct: 119 FYKKWIPKEEEMVEKAF--KILEFLKLSHLYDRKAGE--------LSGGQMKLVEIGRAL 168
Query: 187 LTDPALLLCDEPTTGL---DSFSASKLIRMMRELTSQRKKTVL 226
+T+P +++ DEP G+ + + ++ + T L
Sbjct: 169 MTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA----KGITFL 207
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 45.5 bits (109), Expect = 2e-05
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
V +SGG+R+RL+ A L +P +L+ DE T LDS S
Sbjct: 138 VKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 28/91 (30%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231
LSGG+R+R++ A L+ +P +L+ DE T+ LD S ++R M ++ R TV+ H+
Sbjct: 146 LSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGR--TVIIIAHR 203
Query: 232 PSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S+ + D+II++ + G L+
Sbjct: 204 LST--VKNADRIIVMEKGKIVEQGKHKELLS 232
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 34/136 (25%), Positives = 61/136 (44%), Gaps = 22/136 (16%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
GD+ + GK V + G ++Q+ LF +TVY+++ F L+ R K +
Sbjct: 70 GDVWIGGKRVTDLPPQKRNVGLVFQNYALF-QHMTVYDNVSFG--LREKRVPKDEMDARV 126
Query: 144 INSL-LIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGL 202
L + L + + LSGG+++R++ A L P +LL DEP +
Sbjct: 127 RELLRFMRLESY-------ANRFPHE---LSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 203 DSFSASKLIRMMR-EL 217
D +++ R +R +
Sbjct: 177 D----TQIRRELRTFV 188
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 9e-05
Identities = 39/226 (17%), Positives = 80/226 (35%), Gaps = 20/226 (8%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217
T +G LSGG+++R++ A L+ +P +LL DE T+ LD+ S + + + +
Sbjct: 517 DTLVGERGAQ----LSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKA 572
Query: 218 TSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD---------AALAFLESQG 268
R T + H+ S+ + D I G+ D L ++ G
Sbjct: 573 REGR--TTIVIAHRLST--VRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQTAG 628
Query: 269 YPCPYGYNPADFLIKSLAVTTNDELSSRRRLKRICDEFSVCDFAKEVDLEINYQTHVGTY 328
G + + + + S ++R S+C + +
Sbjct: 629 NEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDV 688
Query: 329 DFLADFNSRKIKKPFWFTIIYVLISRSFLNVVRDP--AIQLSKLFQ 372
+ + K+ W + + + +N P ++ SK+
Sbjct: 689 PPASFWRILKLNSTEWPYFVVGIFC-AIINGGLQPAFSVIFSKVVG 733
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 38/145 (26%), Positives = 67/145 (46%), Gaps = 25/145 (17%)
Query: 87 GDIRVNGKPVEGKFRSA------CGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G+I ++GK + K + G++ Q LF P LTVY ++ + L + A Q
Sbjct: 59 GEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF-PHLTVYRNIAYG--LGNGKGRTA-Q 114
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
I ++L G+ + + + LSGG+++R + A L DP L+L DEP
Sbjct: 115 ERQRIEAMLELTGI-----SELAGRYPHE---LSGGQQQRAALARALAPDPELILLDEPF 166
Query: 200 TGLDSFSASKL-IRMMRELTS-QRK 222
+ LD +L ++ ++ + R
Sbjct: 167 SALD----EQLRRQIREDMIAALRA 187
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 43.3 bits (103), Expect = 2e-04
Identities = 38/144 (26%), Positives = 64/144 (44%), Gaps = 30/144 (20%)
Query: 87 GDIRVNGKPVEGK--FRSACGFMYQH-DLFSPSLTVYEHLYF---MALLKLDRRVKAYQR 140
G I ++GK V + F+YQ+ LF P + V ++L F M +K +RV R
Sbjct: 55 GRILLDGKDVTDLSPEKHDIAFVYQNYSLF-PHMNVKKNLEFGMRMKKIKDPKRVLDTAR 113
Query: 141 IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200
+++ + + LSGGE++R++ A L+T+P +LL DEP +
Sbjct: 114 -------DLKIEHL-------LDRNPLT---LSGGEQQRVALARALVTNPKILLLDEPLS 156
Query: 201 GLDSFSASKL-IRMMRELTS-QRK 222
LD + L+ +K
Sbjct: 157 ALD----PRTQENAREMLSVLHKK 176
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204
V LSGG+++RLS A L +P +L+ DE T+ LD
Sbjct: 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDL 510
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 21/55 (38%), Positives = 33/55 (60%), Gaps = 6/55 (10%)
Query: 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----RMMRELTS 219
V+LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I + + TS
Sbjct: 479 VLLSGGQRQRIAIARALLRDSPILILDEATSALDTES-ERAIQAALDELQKNRTS 532
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 13/81 (16%)
Query: 172 LSGGERKRLSFATEL-------LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224
LSGGE+ ++ + L ++ DEPT LD +KL + R++ S +
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 225 VLCTI-HQPSSELIDMFDKII 244
+ I H EL D+ D II
Sbjct: 341 I---ITHHR--ELEDVADVII 356
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 10/67 (14%)
Query: 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-----R 212
T IG + + LSGG+R+R++ A LL D +L+ DE T+ LD+ S + I
Sbjct: 471 DTVIGENGTS----LSGGQRQRVAIARALLRDAPVLILDEATSALDTES-ERAIQAALDE 525
Query: 213 MMRELTS 219
+ + T
Sbjct: 526 LQKNKTV 532
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 6e-04
Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 28/136 (20%)
Query: 86 DGDIRVNGKPVEG-----------------KFRSACGFMYQH-DLFSPSLTVYEHLYFMA 127
+G I VNG+ + R+ ++QH +L+ +TV E++ A
Sbjct: 60 EGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLW-SHMTVLENV-MEA 117
Query: 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL 187
+++ K L ++G+ + LSGG+++R+S A L
Sbjct: 118 PIQVLGLSKH-DARERALKYLAKVGIDERAQGKYPVH-------LSGGQQQRVSIARALA 169
Query: 188 TDPALLLCDEPTTGLD 203
+P +LL DEPT+ LD
Sbjct: 170 MEPDVLLFDEPTSALD 185
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 7e-04
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFS 206
LSGG+R+ ++ A L+ P LL+ D T+ LD+ +
Sbjct: 157 LSGGQRQAVALARALIRKPRLLILDNATSALDAGN 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.98 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.98 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.97 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.95 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.93 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.88 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.85 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.85 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.85 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.85 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.82 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.82 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.81 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.81 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.81 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.8 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.8 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.78 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.78 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.77 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.76 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.76 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.74 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.74 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.73 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.72 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.69 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.69 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.68 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.67 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.67 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.63 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.62 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.62 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.61 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.58 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.56 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.56 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.53 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.52 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.5 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.5 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.5 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.49 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.48 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.45 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.42 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.41 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.36 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.36 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.36 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.34 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.33 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.32 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.32 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.31 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.29 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.28 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.24 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.2 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.18 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.16 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.14 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.13 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.11 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.11 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.1 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.08 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.07 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.03 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.02 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.02 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.99 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.96 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.93 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.87 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.78 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.75 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.74 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.69 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.61 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.61 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 98.57 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.54 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.51 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.48 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.43 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.43 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.42 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.32 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.29 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.26 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.25 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.1 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.05 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.98 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.92 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 97.9 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.75 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.73 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.7 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.66 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.62 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 97.51 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 97.49 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.45 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.45 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.26 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.2 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.11 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.11 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 97.1 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.1 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.09 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.06 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 96.97 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 96.92 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 96.87 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 96.81 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.72 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 96.56 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 96.54 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 96.54 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.51 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 96.51 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 96.48 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 96.31 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.24 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 96.19 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 96.07 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.98 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 95.97 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 95.84 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 95.8 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 95.79 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 95.76 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 95.72 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.64 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 95.6 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 95.38 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.36 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.34 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 95.31 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.18 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.16 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 95.02 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 95.0 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 94.96 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 94.96 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 94.96 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 94.89 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 94.8 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.76 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 94.73 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 94.6 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 94.51 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 94.51 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 94.46 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 94.31 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 94.27 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 94.1 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 93.85 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 93.77 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 93.59 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 93.49 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 93.41 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 93.25 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 92.86 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 92.84 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 92.68 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 92.64 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 92.23 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 92.11 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 91.84 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 91.79 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.77 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 91.7 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 91.23 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 91.22 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 91.09 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 91.08 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 90.92 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 90.65 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 90.51 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 90.07 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 90.0 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 89.76 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 89.48 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 89.4 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 89.38 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 88.97 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 88.97 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 88.84 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 88.5 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 88.47 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 88.36 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 88.17 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 87.9 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 87.78 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 87.73 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 87.71 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 87.61 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 87.61 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 87.51 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 87.4 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 87.38 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 87.19 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 87.15 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 87.12 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 87.1 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 86.96 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 86.95 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 86.86 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 86.85 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 86.8 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 86.8 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 86.68 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 86.61 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 86.49 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 86.34 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 86.31 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 86.3 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 86.28 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 86.28 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 86.22 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 86.2 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 86.2 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 86.07 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 86.05 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 85.9 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 85.89 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 85.87 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 85.86 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 85.81 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 85.75 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 85.72 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 85.7 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 85.42 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 85.34 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 85.28 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 85.26 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 85.24 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 85.23 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 85.19 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 85.03 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 84.94 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 84.93 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 84.82 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 84.81 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 84.72 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 84.7 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 84.68 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 84.68 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 84.65 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 84.5 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 84.34 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 84.23 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 84.2 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 84.18 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 84.16 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 84.1 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 84.08 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 84.05 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 84.03 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 83.96 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 83.88 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 83.83 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 83.82 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 83.82 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 83.8 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 83.68 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 83.66 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 83.65 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 83.63 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 83.63 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 83.62 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 83.61 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 83.56 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 83.54 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 83.54 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 83.52 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 83.51 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 83.43 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 83.43 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 83.43 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 83.39 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 83.36 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 83.34 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 83.32 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 83.25 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 83.23 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 83.23 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 83.2 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 83.13 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 83.12 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 83.08 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 82.9 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 82.89 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 82.83 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 82.55 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 82.48 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 82.42 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 82.33 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 82.29 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 82.26 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 82.13 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 82.1 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 82.02 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 81.99 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 81.93 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 81.83 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 81.81 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 81.78 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 81.75 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 81.69 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 81.6 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 81.51 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 81.51 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 81.43 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 81.37 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 81.35 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 81.3 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 81.11 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 81.08 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 81.06 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 80.98 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 80.83 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 80.79 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 80.72 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 80.68 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 80.6 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 80.56 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 80.43 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 80.23 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 80.21 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 80.18 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 80.09 |
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-48 Score=412.89 Aligned_cols=221 Identities=20% Similarity=0.301 Sum_probs=199.1
Q ss_pred CCcccCCcccccccc--ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 16 NNEEVPNVDFSEIVG--SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g--~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.+++++||+++|..+ +.++|+++||++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i-----~~Gei~~IiGpn-----GaGKSTLlr~i~GL~~p---~~G~I~i~G 89 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHV-----PAGQIYGVIGAS-----GAGKSTLIRCVNLLERP---TEGSVLVDG 89 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETT
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEE-----cCCCEEEEEcCC-----CchHHHHHHHHhcCCCC---CceEEEECC
Confidence 368899999998543 367999999999 678888888776 89999999999999999 599999999
Q ss_pred EecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCC
Q psy2519 94 KPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~ 166 (622)
+++.. ..|+.+|||||++.+++.+||+||+.++..... .++.+.+++++++++.+||.+.+++++++
T Consensus 90 ~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~---~~~~~~~~~v~~lL~~vgL~~~~~~~~~~--- 163 (366)
T 3tui_C 90 QELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPSN--- 163 (366)
T ss_dssp EECSSCCHHHHHHHHTTEEEECSSCCCCTTSCHHHHHHHHHHHSC---CCHHHHHHHHHHHHHHHTCGGGTTCCTTT---
T ss_pred EECCcCCHHHHHHHhCcEEEEeCCCccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh---
Confidence 99864 246889999999999999999999999877653 34566778899999999999999998766
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.+++++|++++++.|+|||++|||+ +++.++||||++|
T Consensus 164 -----LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl-~~~~~~aDrv~vl 237 (366)
T 3tui_C 164 -----LSGGQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVI 237 (366)
T ss_dssp -----SCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCH-HHHHHhCCEEEEE
Confidence 9999999999999999999999999999999999999999999999876799999999996 6888999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|++++++
T Consensus 238 ~~G~iv~~g~~~ev~ 252 (366)
T 3tui_C 238 SNGELIEQDTVSEVF 252 (366)
T ss_dssp ETTEEEECCBHHHHH
T ss_pred ECCEEEEEcCHHHHH
Confidence 999999999999875
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=413.14 Aligned_cols=218 Identities=21% Similarity=0.254 Sum_probs=196.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |+.++|+++||++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~i~~ls~~y--~~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~G~I~i~G~~i 68 (359)
T 3fvq_A 4 ALHIGHLSKSF--QNTPVLNDISLSL-----DPGEILFIIGAS-----GCGKTTLLRCLAGFEQP---DSGEISLSGKTI 68 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 57899999996 7889999999999 677888888886 89999999999999999 599999999998
Q ss_pred ----Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 ----EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ----~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+|||||++.++|.+||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+
T Consensus 69 ~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~------- 138 (359)
T 3fvq_A 69 FSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGK---GRTAQERQRIEAMLELTGISELAGRYPHE------- 138 (359)
T ss_dssp ESSSCBCCGGGSCCEEECTTCCCCTTSCHHHHHHTTSTTSS---CCSHHHHHHHHHHHHHHTCGGGTTSCGGG-------
T ss_pred cccccccchhhCCEEEEeCCCcCCCCCCHHHHHHHHHHHcC---CChHHHHHHHHHHHHHcCCchHhcCChhh-------
Confidence 22 346789999999999999999999999865432 23455667899999999999999999777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|+||||+ +++..+||||++|++|+
T Consensus 139 -LSGGq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~-~ea~~~aDri~vl~~G~ 216 (359)
T 3fvq_A 139 -LSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDR-EEALQYADRIAVMKQGR 216 (359)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHHCCEEEEEECCE
Confidence 9999999999999999999999999999999999999999999998776799999999995 78999999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 217 i~~~g~~~el~ 227 (359)
T 3fvq_A 217 ILQTASPHELY 227 (359)
T ss_dssp EEEEECHHHHH
T ss_pred EEEEeCHHHHH
Confidence 99999999875
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-48 Score=413.23 Aligned_cols=218 Identities=23% Similarity=0.307 Sum_probs=199.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+.++|+++||++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--g~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~p---~~G~I~i~G~~~ 67 (381)
T 3rlf_A 3 SVQLQNVTKAW--GEVVVSKDINLDI-----HEGEFVVFVGPS-----GCGKSTLLRMIAGLETI---TSGDLFIGEKRM 67 (381)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEE-----CCCCEEEEEcCC-----CchHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 47899999996 7889999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|.+||+||+.|+.+.+. .++++.+++++++++.+||.+..++++.+ |||
T Consensus 68 ~~~~~~~r~ig~VfQ~~~l~p~ltV~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~p~~--------LSG 136 (381)
T 3rlf_A 68 NDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSG 136 (381)
T ss_dssp TTCCGGGSCEEEECTTCCCCTTSCHHHHHTHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTCCGGG--------SCH
T ss_pred CCCCHHHCCEEEEecCCcCCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCChhH--------CCH
Confidence 65 346789999999999999999999999987653 35566778899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++.++.|+|+|++|||+ +++..+||||++|++|+++..
T Consensus 137 GqrQRVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~ea~~~aDri~vl~~G~i~~~ 215 (381)
T 3rlf_A 137 GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQV 215 (381)
T ss_dssp HHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876699999999995 789999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~l~ 222 (381)
T 3rlf_A 216 GKPLELY 222 (381)
T ss_dssp ECHHHHH
T ss_pred eCHHHHH
Confidence 9999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-47 Score=385.76 Aligned_cols=221 Identities=21% Similarity=0.294 Sum_probs=189.5
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++|..++ .++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~ 67 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNI-----KEGEFVSIMGPS-----GSGKSTMLNIIGCLDKP---TEGEVYIDNI 67 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CceEEEECCE
Confidence 367899999985433 57999999999 678888888877 89999999999999999 5999999999
Q ss_pred ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcC
Q psy2519 95 PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSS 165 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~ 165 (622)
++.. . .++.+|||||++.+++.+||+||+.++.........+..+..+++.++++.++|.+. .++++.+
T Consensus 68 ~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-- 145 (235)
T 3tif_A 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-- 145 (235)
T ss_dssp ECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG--
T ss_pred EcccCCHHHHHHHhhccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhh--
Confidence 9854 1 235699999999999999999999998765421223445567788999999999875 4888666
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ + +.++|||+++
T Consensus 146 ------LSgGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~-~-~~~~~d~i~~ 217 (235)
T 3tif_A 146 ------LSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-N-VARFGERIIY 217 (235)
T ss_dssp ------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCH-H-HHTTSSEEEE
T ss_pred ------CCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCH-H-HHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999875599999999996 4 4589999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|+++..++++++
T Consensus 218 l~~G~i~~~~~~~~~ 232 (235)
T 3tif_A 218 LKDGEVEREEKLRGF 232 (235)
T ss_dssp EETTEEEEEEECC--
T ss_pred EECCEEEEEcChhhh
Confidence 999999999988764
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-47 Score=392.59 Aligned_cols=219 Identities=22% Similarity=0.336 Sum_probs=192.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. ++.++|+++|+++ .+|+.++++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 7 ~l~i~~ls~~y~-~~~~~L~~isl~i-----~~Ge~~~iiGpn-----GsGKSTLl~~l~Gl~~p---~~G~I~~~G~~i 72 (275)
T 3gfo_A 7 ILKVEELNYNYS-DGTHALKGINMNI-----KRGEVTAILGGN-----GVGKSTLFQNFNGILKP---SSGRILFDNKPI 72 (275)
T ss_dssp EEEEEEEEEECT-TSCEEEEEEEEEE-----ETTSEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEEEEEEEEC-CCCeEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHcCCCC---CCeEEEECCEEC
Confidence 578999999973 3456999999999 677788888887 89999999999999999 599999999998
Q ss_pred C--c----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 E--G----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
. . .+++.+|||||++ ..+..+||+||+.|+..... .+.++.+++++++++.+||.+..++++.+
T Consensus 73 ~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------ 143 (275)
T 3gfo_A 73 DYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMK---LPEDEIRKRVDNALKRTGIEHLKDKPTHC------ 143 (275)
T ss_dssp CCSHHHHHHHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHTTCGGGTTSBGGG------
T ss_pred CcccccHHHHhCcEEEEEcCcccccccCcHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhcCCccc------
Confidence 4 2 3578899999986 34457899999999876542 34556677899999999999999998777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++++|+|||++|||+ +++.++|||+++|++|
T Consensus 144 --LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~drv~~l~~G 220 (275)
T 3gfo_A 144 --LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDI-DIVPLYCDNVFVMKEG 220 (275)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCC-SSGGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999833599999999997 5788899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 221 ~i~~~g~~~~~~ 232 (275)
T 3gfo_A 221 RVILQGNPKEVF 232 (275)
T ss_dssp EEEEEECHHHHT
T ss_pred EEEEECCHHHHh
Confidence 999999999875
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=402.55 Aligned_cols=219 Identities=21% Similarity=0.299 Sum_probs=196.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|. |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 14 ~l~~~~l~~~y~-g~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 79 (355)
T 1z47_A 14 TIEFVGVEKIYP-GGARSVRGVSFQI-----REGEMVGLLGPS-----GSGKTTILRLIAGLERP---TKGDVWIGGKRV 79 (355)
T ss_dssp EEEEEEEEECCT-TSTTCEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEEc-CCCEEEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CccEEEECCEEC
Confidence 578999999863 6677999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|.+||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 80 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~r~~~~--------LSG 148 (355)
T 1z47_A 80 TDLPPQKRNVGLVFQNYALFQHMTVYDNVSFGLREKR---VPKDEMDARVRELLRFMRLESYANRFPHE--------LSG 148 (355)
T ss_dssp TTCCGGGSSEEEECGGGCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG--------SCH
T ss_pred CcCChhhCcEEEEecCcccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCCccc--------CCH
Confidence 64 356789999999999999999999999876542 24455667899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 149 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 227 (355)
T 1z47_A 149 GQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQ-EEALEVADRVLVLHEGNVEQF 227 (355)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 228 g~~~~l~ 234 (355)
T 1z47_A 228 GTPEEVY 234 (355)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999875
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-47 Score=386.99 Aligned_cols=217 Identities=22% Similarity=0.313 Sum_probs=192.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 24 ~l~i~~l~~~y--~~~~vL~~vsl~i-----~~Gei~~liG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~i 88 (263)
T 2olj_A 24 MIDVHQLKKSF--GSLEVLKGINVHI-----REGEVVVVIGPS-----GSGKSTFLRCLNLLEDF---DEGEIIIDGINL 88 (263)
T ss_dssp SEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEES
T ss_pred eEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEEcCC-----CCcHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 58999999997 7778999999999 677888888887 89999999999999999 599999999998
Q ss_pred C--c----cccccEEEEecCCCCCCCCCHHHHHHHHH-HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 E--G----KFRSACGFMYQHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
. . .+++.+|||+|++.+++.+||+||+.++. .... .+..+.+++++++++.+||.+..++++.+
T Consensus 89 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~~~~~~------ 159 (263)
T 2olj_A 89 KAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRK---WPREKAEAKAMELLDKVGLKDKAHAYPDS------ 159 (263)
T ss_dssp SSTTCCHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG------
T ss_pred CCccccHHHHhCcEEEEeCCCcCCCCCCHHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCChhh------
Confidence 4 1 24678999999999999999999999964 3322 23344566789999999999988988777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||++++|++|
T Consensus 160 --LSgGqkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G 235 (263)
T 2olj_A 160 --LSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN-EGMTMVVVTHEM-GFAREVGDRVLFMDGG 235 (263)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999987 499999999996 6888899999999999
Q ss_pred ceEEecChHHHH
Q psy2519 250 RTAFIGSKDAAL 261 (622)
Q Consensus 250 ~iv~~G~~~~~~ 261 (622)
++++.|+++++.
T Consensus 236 ~i~~~g~~~~~~ 247 (263)
T 2olj_A 236 YIIEEGKPEDLF 247 (263)
T ss_dssp EEEEEECHHHHH
T ss_pred EEEEECCHHHHH
Confidence 999999998765
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-47 Score=387.88 Aligned_cols=217 Identities=22% Similarity=0.268 Sum_probs=192.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 70 (262)
T 1b0u_A 6 KLHVIDLHKRY--GGHEVLKGVSLQA-----RAGDVISIIGSS-----GSGKSTFLRCINFLEKP---SEGAIIVNGQNI 70 (262)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred eEEEeeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEc
Confidence 58899999997 7778999999999 677788888887 89999999999999999 599999999987
Q ss_pred Cc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHH-HcCCCccccHHHHHHHHHHHHHHhCCCcc-c
Q psy2519 97 EG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMA-LLKLDRRVKAYQRIALINSLLIELGLMNS-Q 157 (622)
Q Consensus 97 ~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~-~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~ 157 (622)
.. ..++.+|||||++.+++.+||+||+.++. .... .+..+.+++++++++.+||.+. .
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 71 NLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG---LSKHDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp CEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTC---CCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred cccccccccccccChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcC---CCHHHHHHHHHHHHHHcCCCchhh
Confidence 51 24678999999999999999999999964 3321 2334456778999999999988 8
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.
T Consensus 148 ~~~~~~--------LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~~ 217 (262)
T 1b0u_A 148 GKYPVH--------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFAR 217 (262)
T ss_dssp TSCGGG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCH-HHHH
T ss_pred cCCccc--------CCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHH
Confidence 988777 999999999999999999999999999999999999999999999987 599999999996 6888
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++|||+++|++|++++.|+++++.
T Consensus 218 ~~~d~v~~l~~G~i~~~g~~~~~~ 241 (262)
T 1b0u_A 218 HVSSHVIFLHQGKIEEEGDPEQVF 241 (262)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEeCCHHHHH
Confidence 899999999999999999998764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-47 Score=402.80 Aligned_cols=218 Identities=20% Similarity=0.276 Sum_probs=196.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (362)
T 2it1_A 3 EIKLENIVKKF--GNFTALNNINLKI-----KDGEFMALLGPS-----GSGKSTLLYTIAGIYKP---TSGKIYFDEKDV 67 (362)
T ss_dssp CEEEEEEEEES--SSSEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEEEEEeeEEEE-----CCCCEEEEECCC-----CchHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997 7778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++.+ |||
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSG 136 (362)
T 2it1_A 68 TELPPKDRNVGLVFQNWALYPHMTVYKNIAFPLELRK---APREEIDKKVREVAKMLHIDKLLNRYPWQ--------LSG 136 (362)
T ss_dssp TTSCGGGTTEEEECTTCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGG--------SCH
T ss_pred CcCCHhHCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhhCChhh--------CCH
Confidence 64 346789999999999999999999999876542 23455667899999999999999998776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 215 (362)
T 2it1_A 137 GQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQ-AEALAMADRIAVIREGEILQV 215 (362)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~~~ 222 (362)
T 2it1_A 216 GTPDEVY 222 (362)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999875
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-47 Score=403.13 Aligned_cols=218 Identities=19% Similarity=0.258 Sum_probs=195.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 67 (359)
T 2yyz_A 3 SIRVVNLKKYF--GKVKAVDGVSFEV-----KDGEFVALLGPS-----GCGKTTTLLMLAGIYKP---TSGEIYFDDVLV 67 (359)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred EEEEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEEcCC-----CchHHHHHHHHHCCCCC---CccEEEECCEEC
Confidence 47899999997 7788999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++ |||
T Consensus 68 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSg 136 (359)
T 2yyz_A 68 NDIPPKYREVGMVFQNYALYPHMTVFENIAFPLRARR---ISKDEVEKRVVEIARKLLIDNLLDRKPTQ--------LSG 136 (359)
T ss_dssp TTSCGGGTTEEEECSSCCCCTTSCHHHHHHGGGSSSC---SHHHHTTHHHHHHHHHTTCGGGTTSCGGG--------SCH
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh--------CCH
Confidence 64 346789999999999999999999999765432 23444567899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 137 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~~G~i~~~ 215 (359)
T 2yyz_A 137 GQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQ-AEAMTMASRIAVFNQGKLVQY 215 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 216 g~~~~l~ 222 (359)
T 2yyz_A 216 GTPDEVY 222 (359)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-46 Score=401.48 Aligned_cols=218 Identities=21% Similarity=0.283 Sum_probs=195.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~~ 67 (372)
T 1g29_1 3 GVRLVDVWKVF--GEVTAVREMSLEV-----KDGEFMILLGPS-----GCGKTTTLRMIAGLEEP---SRGQIYIGDKLV 67 (372)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEEEEeEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CcHHHHHHHHHHcCCCC---CccEEEECCEEC
Confidence 36899999997 7788999999999 677788888776 89999999999999999 599999999987
Q ss_pred Cc--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~----- 139 (372)
T 1g29_1 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPRE----- 139 (372)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----
T ss_pred ccccccccCCHhHCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHCCCchHhcCCccc-----
Confidence 43 245789999999999999999999999876542 24455667899999999999999998776
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++
T Consensus 140 ---LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~ 215 (372)
T 1g29_1 140 ---LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNR 215 (372)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCH-HHHHHhCCEEEEEeC
Confidence 9999999999999999999999999999999999999999999999875699999999995 688899999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 216 G~i~~~g~~~~l~ 228 (372)
T 1g29_1 216 GVLQQVGSPDEVY 228 (372)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHH
Confidence 9999999999875
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-46 Score=382.99 Aligned_cols=219 Identities=18% Similarity=0.243 Sum_probs=194.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|++
T Consensus 14 ~~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Gei~~l~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~ 78 (256)
T 1vpl_A 14 GAVVVKDLRKRI--GKKEILKGISFEI-----EEGEIFGLIGPN-----GAGKTTTLRIISTLIKP---SSGIVTVFGKN 78 (256)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEE
T ss_pred CeEEEEEEEEEE--CCEEEEEeeEEEE-----cCCcEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEE
Confidence 567899999997 6778999999999 677888888887 89999999999999999 59999999999
Q ss_pred cCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 96 VEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 96 ~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
+.. ..++.+|||+|++.+++.+||+||+.+...... .+..+.+++++++++.+||.+..++++++ |
T Consensus 79 ~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~gL~~~~~~~~~~--------L 147 (256)
T 1vpl_A 79 VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVST--------Y 147 (256)
T ss_dssp TTTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGG--------C
T ss_pred CCccHHHHhhcEEEEcCCCCCCCCCcHHHHHHHHHHHcC---CChHHHHHHHHHHHHHCCCchHhcCChhh--------C
Confidence 854 356789999999999999999999999765432 12334456788999999999988888777 9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++.++||++++|++|+++
T Consensus 148 SgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tiiivtHd~-~~~~~~~d~v~~l~~G~i~ 225 (256)
T 1vpl_A 148 SKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIV 225 (256)
T ss_dssp CHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHHHHHCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999986 699999999996 6788889999999999999
Q ss_pred EecChHHHHH
Q psy2519 253 FIGSKDAALA 262 (622)
Q Consensus 253 ~~G~~~~~~~ 262 (622)
+.|+++++.+
T Consensus 226 ~~g~~~~~~~ 235 (256)
T 1vpl_A 226 ETGTVEELKE 235 (256)
T ss_dssp EEEEHHHHHH
T ss_pred EecCHHHHHH
Confidence 9999988754
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-47 Score=402.23 Aligned_cols=218 Identities=21% Similarity=0.258 Sum_probs=189.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~~i 75 (372)
T 1v43_A 11 EVKLENLTKRF--GNFTAVNKLNLTI-----KDGEFLVLLGPS-----GCGKTTTLRMIAGLEEP---TEGRIYFGDRDV 75 (372)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEE--CCEEEEeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CceEEEECCEEC
Confidence 47899999997 7778999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||+..++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++ |||
T Consensus 76 ~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~r~~~~--------LSG 144 (372)
T 1v43_A 76 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSG 144 (372)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCTTT--------CCS
T ss_pred CCCChhhCcEEEEecCcccCCCCCHHHHHHHHHHhcC---CCHHHHHHHHHHHHHHcCChhHhcCChhh--------CCH
Confidence 64 346789999999999999999999999754432 24455667899999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|++|+++..
T Consensus 145 Gq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~a~~~adri~vl~~G~i~~~ 223 (372)
T 1v43_A 145 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQI 223 (372)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999875699999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 224 g~~~~l~ 230 (372)
T 1v43_A 224 GSPTEVY 230 (372)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-47 Score=400.93 Aligned_cols=218 Identities=20% Similarity=0.278 Sum_probs=195.3
Q ss_pred CcccCCcccccccccee--eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQ--VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~--~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++| |+.+ +|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+
T Consensus 3 ~l~i~~l~~~y--~~~~~~vl~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~i~g~ 67 (353)
T 1oxx_K 3 RIIVKNVSKVF--KKGKVVALDNVNINI-----ENGERFGILGPS-----GAGKTTFMRIIAGLDVP---STGELYFDDR 67 (353)
T ss_dssp CEEEEEEEEEE--GGGTEEEEEEEEEEE-----CTTCEEEEECSC-----HHHHHHHHHHHHTSSCC---SEEEEEETTE
T ss_pred EEEEEeEEEEE--CCEeeeeEeceEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CceEEEECCE
Confidence 47899999997 6667 999999999 677788888776 89999999999999999 5999999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. ..++.+|||||++.++|++||+||+.|+.+.+. .++.+.+++++++++.+||.+..++++++
T Consensus 68 ~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~L~~~~~~~~~~---- 140 (353)
T 1oxx_K 68 LVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFPRE---- 140 (353)
T ss_dssp EEEETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG----
T ss_pred ECcccccccCChhhCCEEEEeCCCccCCCCCHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchHhcCChhh----
Confidence 8743 356789999999999999999999999765432 24455667899999999999999999776
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++..+|||+++|+
T Consensus 141 ----LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~-~~~~~~adri~vl~ 215 (353)
T 1oxx_K 141 ----LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLV 215 (353)
T ss_dssp ----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999875699999999995 68889999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|+++..|+++++.
T Consensus 216 ~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 216 KGKLVQVGKPEDLY 229 (353)
T ss_dssp TTEEEEEECHHHHH
T ss_pred CCEEEEEcCHHHHH
Confidence 99999999999875
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-47 Score=386.56 Aligned_cols=216 Identities=23% Similarity=0.307 Sum_probs=192.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 11 ~l~~~~l~~~~--~~~~vL~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~ 75 (266)
T 4g1u_C 11 LLEASHLHYHV--QQQALINDVSLHI-----ASGEMVAIIGPN-----GAGKSTLLRLLTGYLSP---SHGECHLLGQNL 75 (266)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECCT-----TSCHHHHHHHHTSSSCC---SSCEEEETTEET
T ss_pred eEEEEeEEEEe--CCeeEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEECCEEC
Confidence 57899999986 7888999999999 677888888887 89999999999999999 489999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. ..++.+||++|++.+++.+||+||+.++..... ..+.+++++++++.++|.+..++.+++ |
T Consensus 76 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~-----~~~~~~~~~~~l~~~~l~~~~~~~~~~--------L 142 (266)
T 4g1u_C 76 NSWQPKALARTRAVMRQYSELAFPFSVSEVIQMGRAPYG-----GSQDRQALQQVMAQTDCLALAQRDYRV--------L 142 (266)
T ss_dssp TTSCHHHHHHHEEEECSCCCCCSCCBHHHHHHGGGTTSC-----STTHHHHHHHHHHHTTCSTTTTSBGGG--------C
T ss_pred CcCCHHHHhheEEEEecCCccCCCCCHHHHHHhhhhhcC-----cHHHHHHHHHHHHHcCChhHhcCCccc--------C
Confidence 64 356789999999998899999999999764431 122346788999999999999998777 9
Q ss_pred ChHHHHHHHHHHHHhh------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATELLT------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
||||||||+|||||+. +|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++|||+++|
T Consensus 143 SgGq~QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl-~~~~~~~d~v~vl 221 (266)
T 4g1u_C 143 SGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDL-NLAALYADRIMLL 221 (266)
T ss_dssp CHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCH-HHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCH-HHHHHhCCEEEEE
Confidence 9999999999999999 99999999999999999999999999999875578999999996 6888899999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 222 ~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 222 AQGKLVACGTPEEVL 236 (266)
T ss_dssp ETTEEEEEECHHHHC
T ss_pred ECCEEEEEcCHHHHh
Confidence 999999999999764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-46 Score=372.89 Aligned_cols=211 Identities=21% Similarity=0.276 Sum_probs=186.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 4 ~l~~~~l~~~y--~~~~~l~~vsl~i-----~~Ge~~~iiG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 68 (224)
T 2pcj_A 4 ILRAENIKKVI--RGYEILKGISLSV-----KKGEFVSIIGAS-----GSGKSTLLYILGLLDAP---TEGKVFLEGKEV 68 (224)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEEECT-----TSCHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEEeEEEEE--CCEeeEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEECCEEC
Confidence 47899999997 6678999999999 677788888887 89999999999999999 599999999998
Q ss_pred Cc-------ccc-ccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG-------KFR-SACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~-------~~r-~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. .++ +.+|||+|++.+++.+||+||+.++...+. .++.+.+++++++++.+||.+..++++++
T Consensus 69 ~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----- 140 (224)
T 2pcj_A 69 DYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMG---KPKKEAKERGEYLLSELGLGDKLSRKPYE----- 140 (224)
T ss_dssp CSSCHHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHTTCTTCTTCCGGG-----
T ss_pred CCCCHHHHHHHHhCcEEEEecCcccCCCCCHHHHHHhHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh-----
Confidence 53 122 679999999999999999999999765532 23344556789999999999999988777
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +.+ ++||++++|++
T Consensus 141 ---LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~v~~l~~ 214 (224)
T 2pcj_A 141 ---LSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINE-GGTSIVMVTHER-ELA-ELTHRTLEMKD 214 (224)
T ss_dssp ---SCHHHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH-TTSSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEcCCH-HHH-HhCCEEEEEEC
Confidence 999999999999999999999999999999999999999999999987 499999999996 455 89999999999
Q ss_pred CceEEecC
Q psy2519 249 SRTAFIGS 256 (622)
Q Consensus 249 G~iv~~G~ 256 (622)
|++++.|+
T Consensus 215 G~i~~~g~ 222 (224)
T 2pcj_A 215 GKVVGEIT 222 (224)
T ss_dssp TEEEEEEE
T ss_pred CEEEEEee
Confidence 99999886
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-46 Score=395.58 Aligned_cols=214 Identities=25% Similarity=0.297 Sum_probs=191.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+. +++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~y--~~~-~l~~vsl~i-----~~Ge~~~llGpn-----GsGKSTLLr~iaGl~~p---~~G~I~~~g~~i 64 (348)
T 3d31_A 1 MIEIESLSRKW--KNF-SLDNLSLKV-----ESGEYFVILGPT-----GAGKTLFLELIAGFHVP---DSGRILLDGKDV 64 (348)
T ss_dssp CEEEEEEEEEC--SSC-EEEEEEEEE-----CTTCEEEEECCC-----THHHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred CEEEEEEEEEE--CCE-EEeeeEEEE-----cCCCEEEEECCC-----CccHHHHHHHHHcCCCC---CCcEEEECCEEC
Confidence 36789999997 666 999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+.+.+.. ++. ++++++++.++|.+..++++++ |||
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~~---~~~---~~v~~~l~~~~L~~~~~~~~~~--------LSg 130 (348)
T 3d31_A 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---KDP---KRVLDTARDLKIEHLLDRNPLT--------LSG 130 (348)
T ss_dssp TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---CCH---HHHHHHHHHTTCTTTTTSCGGG--------SCH
T ss_pred CCCchhhCcEEEEecCcccCCCCCHHHHHHHHHHHcCC---CHH---HHHHHHHHHcCCchHhcCChhh--------CCH
Confidence 64 3567899999999999999999999998765321 111 5788999999999999999776 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+..+.++.+.|++++++.|+|+|++|||+ +++.++|||+++|++|+++..
T Consensus 131 Gq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~-~~~~~~adri~vl~~G~i~~~ 209 (348)
T 3d31_A 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQV 209 (348)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999876799999999995 688899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 210 g~~~~~~ 216 (348)
T 3d31_A 210 GKPEEIF 216 (348)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9999875
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-46 Score=376.84 Aligned_cols=213 Identities=22% Similarity=0.282 Sum_probs=187.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+ +++++|+++ ++ +.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 1 ml~~~~l~~~y--~~--~l~~isl~i-----~~-e~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 62 (240)
T 2onk_A 1 MFLKVRAEKRL--GN--FRLNVDFEM-----GR-DYCVLLGPT-----GAGKSVFLELIAGIVKP---DRGEVRLNGADI 62 (240)
T ss_dssp CCEEEEEEEEE--TT--EEEEEEEEE-----CS-SEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred CEEEEEEEEEe--CC--EEeeeEEEE-----CC-EEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEECCEEC
Confidence 36789999997 54 499999999 66 788888777 89999999999999999 599999999998
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||+|++.+++.+||+||+.++...+. .. ..+++++++++.+||.+..++++++ |||
T Consensus 63 ~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~---~~--~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 129 (240)
T 2onk_A 63 TPLPPERRGIGFVPQDYALFPHLSVYRNIAYGLRNVE---RV--ERDRRVREMAEKLGIAHLLDRKPAR--------LSG 129 (240)
T ss_dssp TTSCTTTSCCBCCCSSCCCCTTSCHHHHHHTTCTTSC---HH--HHHHHHHHHHHTTTCTTTTTCCGGG--------SCH
T ss_pred CcCchhhCcEEEEcCCCccCCCCcHHHHHHHHHHHcC---Cc--hHHHHHHHHHHHcCCHHHhcCChhh--------CCH
Confidence 54 356789999999999999999999998653321 11 2256788999999999988988777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++||++++|++|++++.
T Consensus 130 GqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~i~~l~~G~i~~~ 208 (240)
T 2onk_A 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEK 208 (240)
T ss_dssp HHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999865599999999996 678899999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 209 g~~~~~~ 215 (240)
T 2onk_A 209 GKLKELF 215 (240)
T ss_dssp ECHHHHH
T ss_pred CCHHHHH
Confidence 9998765
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-46 Score=382.87 Aligned_cols=218 Identities=19% Similarity=0.223 Sum_probs=190.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ ++|+.+.++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 7 ~l~i~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLlk~l~Gl~~p---~~G~i~~~g~~~ 71 (257)
T 1g6h_A 7 ILRTENIVKYF--GEFKALDGVSISV-----NKGDVTLIIGPN-----GSGKSTLINVITGFLKA---DEGRVYFENKDI 71 (257)
T ss_dssp EEEEEEEEEEE--TTEEEEEEECCEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEeeeEEEE--CCEeeEeeeEEEE-----eCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECCEEC
Confidence 47899999997 7778999999999 677788888887 89999999999999999 599999999998
Q ss_pred Cc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHc-CCCc---------cccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 97 EG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALL-KLDR---------RVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 97 ~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l-~~~~---------~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
.. ..++.+|||+|++.+++.+||+||+.++... .... .....+.+++++++++.+||.+..++.+
T Consensus 72 ~~~~~~~~~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 151 (257)
T 1g6h_A 72 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 151 (257)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred CCCCHHHHHhCCEEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCc
Confidence 53 1356799999999999999999999987533 1110 0122334567899999999999899987
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++.++||
T Consensus 152 ~~--------LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~d 221 (257)
T 1g6h_A 152 GE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRL-DIVLNYID 221 (257)
T ss_dssp GG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-STTGGGCS
T ss_pred hh--------CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCC
Confidence 77 999999999999999999999999999999999999999999999987 599999999997 57888999
Q ss_pred ceeeecCCceEEecChHH
Q psy2519 242 KIILLADSRTAFIGSKDA 259 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~ 259 (622)
|+++|++|++++.|++++
T Consensus 222 ~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 222 HLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp EEEEEETTEEEEEEESHH
T ss_pred EEEEEECCEEEEEeCHHH
Confidence 999999999999999887
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=376.64 Aligned_cols=216 Identities=20% Similarity=0.265 Sum_probs=188.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 6 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~ 70 (240)
T 1ji0_A 6 VLEVQSLHVYY--GAIHAIKGIDLKV-----PRGQIVTLIGAN-----GAGKTTTLSAIAGLVRA---QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred eEEEEeEEEEE--CCeeEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCceEEECCEEC
Confidence 47899999997 6678999999999 677788888777 89999999999999999 599999999998
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-CCcccCCccCCcCCCCcc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-LMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L~~~~~~~v~~~~~~~~~ 170 (622)
.. . .++.+|||+|++.+++.+||+||+.++..... ...+..++++++++.++ |.+..++++++
T Consensus 71 ~~~~~~~~~~~~i~~v~q~~~l~~~ltv~enl~~~~~~~~----~~~~~~~~~~~~l~~~~~l~~~~~~~~~~------- 139 (240)
T 1ji0_A 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRK----DKEGIKRDLEWIFSLFPRLKERLKQLGGT------- 139 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCC----CSSHHHHHHHHHHHHCHHHHTTTTSBSSS-------
T ss_pred CCCCHHHHHhCCEEEEecCCccCCCCcHHHHHHHhhhcCC----CHHHHHHHHHHHHHHcccHhhHhcCChhh-------
Confidence 54 1 24569999999999999999999998642211 11233456788999994 98888888776
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ .|+|||++|||+ +++.++|||+++|++|+
T Consensus 140 -LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~ 216 (240)
T 1ji0_A 140 -LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQ 216 (240)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEecCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 699999999996 67889999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
+++.|+++++.
T Consensus 217 i~~~g~~~~~~ 227 (240)
T 1ji0_A 217 IVLEGKASELL 227 (240)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEcCHHHHh
Confidence 99999988764
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-45 Score=373.73 Aligned_cols=219 Identities=22% Similarity=0.332 Sum_probs=188.9
Q ss_pred CcccCCccccccccc---eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 17 NEEVPNVDFSEIVGS---VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~---~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+++++||+++|..++ .++++++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i-----~~Ge~~~liG~n-----GsGKSTLl~~i~Gl~~p---~~G~I~~~g 68 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVI-----NEGECLLVAGNT-----GSGKSTLLQIVAGLIEP---TSGDVLYDG 68 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCcEEEECC
Confidence 468899999984224 67999999999 677788888877 89999999999999999 599999999
Q ss_pred EecCc-cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC--cccCCccCCcCCCCc
Q psy2519 94 KPVEG-KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM--NSQHTRIGSSSITQK 169 (622)
Q Consensus 94 ~~~~~-~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~--~~~~~~v~~~~~~~~ 169 (622)
+++.. .+++.+|||+|++ .+++.+||+||+.++..... +..+.+++++++++.+||. +..++++++
T Consensus 69 ~~~~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~------ 138 (266)
T 2yz2_A 69 ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFY----PDRDPVPLVKKAMEFVGLDFDSFKDRVPFF------ 138 (266)
T ss_dssp EECCHHHHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTTC----TTSCSHHHHHHHHHHTTCCHHHHTTCCGGG------
T ss_pred EECchHHhhhhEEEEeccchhhcCCCcHHHHHHHHHHhcC----CHHHHHHHHHHHHHHcCcCCcccccCChhh------
Confidence 98864 4567899999995 56778999999998653221 1112245678999999999 888888777
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +++.++||++++|++|
T Consensus 139 --LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tii~vtHd~-~~~~~~~d~v~~l~~G 214 (266)
T 2yz2_A 139 --LSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT-LGKTVILISHDI-ETVINHVDRVVVLEKG 214 (266)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-TTTGGGCSEEEEEETT
T ss_pred --CCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHH-cCCEEEEEeCCH-HHHHHhCCEEEEEECC
Confidence 999999999999999999999999999999999999999999999987 499999999997 5777889999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
++++.|+++++.+
T Consensus 215 ~i~~~g~~~~~~~ 227 (266)
T 2yz2_A 215 KKVFDGTRMEFLE 227 (266)
T ss_dssp EEEEEEEHHHHHH
T ss_pred EEEEeCCHHHHhc
Confidence 9999999987753
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=374.47 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=185.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++| |+.++|+++|+++ .+|+.++++|+| |||||||||+|+|+++| .+|+|.++|+++
T Consensus 21 ~l~~~~l~~~y--~~~~vL~~isl~i-----~~Ge~~~liG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g~~~ 85 (279)
T 2ihy_A 21 LIQLDQIGRMK--QGKTILKKISWQI-----AKGDKWILYGLN-----GAGKTTLLNILNAYEPA---TSGTVNLFGKMP 85 (279)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTBCC
T ss_pred eEEEEeEEEEE--CCEEEEEeeeEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CCeEEEECCEEc
Confidence 47899999997 6678999999999 677888888887 89999999999999999 599999999987
Q ss_pred C--c----cccccEEEEecCCCC--CCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 97 E--G----KFRSACGFMYQHDLF--SPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 97 ~--~----~~r~~igyV~Q~~~l--~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
. . .+++.+|||+|++.+ .+.+||+||+.++...... ......+..++++++++.+||.+..++++++
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~---- 161 (279)
T 2ihy_A 86 GKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY---- 161 (279)
T ss_dssp C---CCHHHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG----
T ss_pred ccccCCHHHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh----
Confidence 5 2 356789999998753 3457999999885321100 0011123456788999999999989998777
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE--EEEeccCcHHHHhhccceee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV--LCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv--i~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++ |+|| |++|||+ +++.++||++++
T Consensus 162 ----LSgGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~-g~tv~~iivtHd~-~~~~~~~d~v~~ 235 (279)
T 2ihy_A 162 ----LSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDS-YPTLAMIYVTHFI-EEITANFSKILL 235 (279)
T ss_dssp ----SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHH-CTTCEEEEEESCG-GGCCTTCCEEEE
T ss_pred ----CCHHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHC-CCEEEEEEEecCH-HHHHHhCCEEEE
Confidence 9999999999999999999999999999999999999999999999874 9999 9999996 577789999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 236 l~~G~i~~~g~~~~~ 250 (279)
T 2ihy_A 236 LKDGQSIQQGAVEDI 250 (279)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEECCHHHH
Confidence 999999999998865
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-44 Score=370.16 Aligned_cols=223 Identities=19% Similarity=0.211 Sum_probs=184.4
Q ss_pred cCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
..+++++||+++|.. ++.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g 80 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTL-----YPGKVTALVGPN-----GSGKSTVAALLQNLYQP---TGGKVLLDG 80 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCCEEEECC
Confidence 357899999999732 1267999999999 677788888877 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHh--CCCcccCCccCCcCC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIEL--GLMNSQHTRIGSSSI 166 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~l--gL~~~~~~~v~~~~~ 166 (622)
+++.. .+++.+|||+|++.+++ .||+||+.++...... ...........++++++.+ ||.+..++.+.+
T Consensus 81 ~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~--- 156 (271)
T 2ixe_A 81 EPLVQYDHHYLHTQVAAVGQEPLLFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQ--- 156 (271)
T ss_dssp EEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTT---
T ss_pred EEcccCCHHHHhccEEEEecCCcccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCC---
Confidence 99854 25678999999998887 5999999986422111 0011111223456788888 787777887666
Q ss_pred CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 167 TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 167 ~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++++.|+|||++|||+ +.+. .||++++|
T Consensus 157 -----LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~-~~~~-~~d~v~~l 229 (271)
T 2ixe_A 157 -----LSGGQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL-SLAE-RAHHILFL 229 (271)
T ss_dssp -----SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCH-HHHT-TCSEEEEE
T ss_pred -----CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCH-HHHH-hCCEEEEE
Confidence 9999999999999999999999999999999999999999999999764699999999996 4554 59999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++..|+++++.
T Consensus 230 ~~G~i~~~g~~~~l~ 244 (271)
T 2ixe_A 230 KEGSVCEQGTHLQLM 244 (271)
T ss_dssp ETTEEEEEECHHHHH
T ss_pred ECCEEEEECCHHHHH
Confidence 999999999998775
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-44 Score=364.62 Aligned_cols=219 Identities=21% Similarity=0.220 Sum_probs=179.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC--CCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ--VIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~--~~~~~~~~G~I~~~G~ 94 (622)
+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+ .+| .+|+|.++|+
T Consensus 3 ~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~n-----GsGKSTLlk~l~Gl~~~~p---~~G~I~~~g~ 67 (250)
T 2d2e_A 3 QLEIRDLWASI--DGETILKGVNLVV-----PKGEVHALMGPN-----GAGKSTLGKILAGDPEYTV---ERGEILLDGE 67 (250)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTCTTCEE---EEEEEEETTE
T ss_pred eEEEEeEEEEE--CCEEEEeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CceEEEECCE
Confidence 47899999997 6778999999999 677788888877 89999999999998 666 6999999999
Q ss_pred ecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-CcccCCccCCcCCCC
Q psy2519 95 PVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-MNSQHTRIGSSSITQ 168 (622)
Q Consensus 95 ~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-~~~~~~~v~~~~~~~ 168 (622)
++.. . .++.++||+|++.+++.+||+||+.++............+..++++++++.+|| .+..++++++
T Consensus 68 ~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~----- 142 (250)
T 2d2e_A 68 NILELSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNE----- 142 (250)
T ss_dssp ECTTSCHHHHHHTTBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTC-----
T ss_pred ECCCCCHHHHHhCcEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc-----
Confidence 9854 1 245699999999999999999999986532100011223345678899999999 4777777543
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-ccceeeec
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM-FDKIILLA 247 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~-~D~v~~L~ 247 (622)
+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +++..+ ||++++|+
T Consensus 143 --~LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~~~~~~d~v~~l~ 218 (250)
T 2d2e_A 143 --GFSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRG-PNFGALVITHYQ-RILNYIQPDKVHVMM 218 (250)
T ss_dssp --C----HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCS-TTCEEEEECSSS-GGGGTSCCSEEEEEE
T ss_pred --CCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHh-cCCEEEEEecCH-HHHHHhcCCEEEEEE
Confidence 2999999999999999999999999999999999999999999999976 699999999997 567677 59999999
Q ss_pred CCceEEecChHH
Q psy2519 248 DSRTAFIGSKDA 259 (622)
Q Consensus 248 ~G~iv~~G~~~~ 259 (622)
+|++++.|+++.
T Consensus 219 ~G~i~~~g~~~~ 230 (250)
T 2d2e_A 219 DGRVVATGGPEL 230 (250)
T ss_dssp TTEEEEEESHHH
T ss_pred CCEEEEEeCHHH
Confidence 999999999873
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=362.80 Aligned_cols=230 Identities=18% Similarity=0.174 Sum_probs=189.0
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCCceeeEEEE
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDCIIDGDIRV 91 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~~~~G~I~~ 91 (622)
-..+++++||+++| |+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+. +| .+|+|.+
T Consensus 17 ~~~~l~~~~l~~~y--~~~~vl~~vsl~i-----~~Ge~~~l~G~N-----GsGKSTLlk~l~Gl~~~~p---~~G~I~~ 81 (267)
T 2zu0_C 17 GSHMLSIKDLHVSV--EDKAILRGLSLDV-----HPGEVHAIMGPN-----GSGKSTLSATLAGREDYEV---TGGTVEF 81 (267)
T ss_dssp ---CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTCTTCEE---EEEEEEE
T ss_pred CCceEEEEeEEEEE--CCEEEEEeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCCCC---CCeEEEE
Confidence 34578999999997 6788999999999 677788888887 899999999999995 45 5899999
Q ss_pred CCEecCc----cc-cccEEEEecCCCCCCCCCHHHHHHHHHH-c---CCCccccHHHHHHHHHHHHHHhCCC-cccCCcc
Q psy2519 92 NGKPVEG----KF-RSACGFMYQHDLFSPSLTVYEHLYFMAL-L---KLDRRVKAYQRIALINSLLIELGLM-NSQHTRI 161 (622)
Q Consensus 92 ~G~~~~~----~~-r~~igyV~Q~~~l~~~lTV~E~l~f~~~-l---~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v 161 (622)
+|+++.. .. ++.+|||+|++.+++.+||.||+.+... . ......+..+..++++++++.+||. +..++.+
T Consensus 82 ~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 82 KGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp TTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred CCEECCcCCHHHHhhCCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 9999854 12 3459999999999999999999987542 1 1111122334456789999999996 5677776
Q ss_pred C-CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhh-
Q psy2519 162 G-SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM- 239 (622)
Q Consensus 162 ~-~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~- 239 (622)
+ + |||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++|||+ +++..+
T Consensus 162 ~~~--------LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~ 231 (267)
T 2zu0_C 162 NVG--------FSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD-GKRSFIIVTHYQ-RILDYIK 231 (267)
T ss_dssp TTT--------CCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCC-SSCEEEEECSSG-GGGGTSC
T ss_pred ccC--------CCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeeCH-HHHHhhc
Confidence 4 4 999999999999999999999999999999999999999999999976 599999999996 566665
Q ss_pred ccceeeecCCceEEecChHHHHHHHHhCCC
Q psy2519 240 FDKIILLADSRTAFIGSKDAALAFLESQGY 269 (622)
Q Consensus 240 ~D~v~~L~~G~iv~~G~~~~~~~~~~~~g~ 269 (622)
|||+++|++|++++.|+++++.. ++..++
T Consensus 232 ~d~v~~l~~G~i~~~g~~~~~~~-~~~~~~ 260 (267)
T 2zu0_C 232 PDYVHVLYQGRIVKSGDFTLVKQ-LEEQGY 260 (267)
T ss_dssp CSEEEEEETTEEEEEECTTHHHH-HHTTTC
T ss_pred CCEEEEEECCEEEEEcCHHHHhh-hhhcch
Confidence 89999999999999999987653 344443
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=359.70 Aligned_cols=210 Identities=22% Similarity=0.282 Sum_probs=181.7
Q ss_pred CcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+++++||+++| | +.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.
T Consensus 4 ~l~i~~l~~~y--~~~~~vl~~isl~i-----~~Ge~~~l~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~----- 63 (253)
T 2nq2_C 4 ALSVENLGFYY--QAENFLFQQLNFDL-----NKGDILAVLGQN-----GCGKSTLLDLLLGIHRP---IQGKIE----- 63 (253)
T ss_dssp EEEEEEEEEEE--TTTTEEEEEEEEEE-----ETTCEEEEECCS-----SSSHHHHHHHHTTSSCC---SEEEEE-----
T ss_pred eEEEeeEEEEe--CCCCeEEEEEEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEE-----
Confidence 47899999997 5 678999999999 677788888887 89999999999999999 599998
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.++.+|||+|++.+++.+||+||+.++...... ......+..++++++++.+||.+..++.+++ |||
T Consensus 64 ----~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSg 131 (253)
T 2nq2_C 64 ----VYQSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS--------LSG 131 (253)
T ss_dssp ----ECSCEEEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG--------SCH
T ss_pred ----EeccEEEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh--------CCH
Confidence 256799999999999999999999987532210 0001123356788999999999988988777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|||||||+|||+.++.++.+.|++++++.|+|||++|||+ +++.++||++++|++|+ ++.
T Consensus 132 Gq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~-~~~~~~~d~v~~l~~G~-~~~ 209 (253)
T 2nq2_C 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQP-NQVVAIANKTLLLNKQN-FKF 209 (253)
T ss_dssp HHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCH-HHHHHHCSEEEEEETTE-EEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCH-HHHHHhCCEEEEEeCCe-Eec
Confidence 9999999999999999999999999999999999999999999874499999999996 67888999999999999 999
Q ss_pred cChHHH
Q psy2519 255 GSKDAA 260 (622)
Q Consensus 255 G~~~~~ 260 (622)
|+++++
T Consensus 210 g~~~~~ 215 (253)
T 2nq2_C 210 GETRNI 215 (253)
T ss_dssp EEHHHH
T ss_pred CCHHHH
Confidence 998865
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-44 Score=370.26 Aligned_cols=216 Identities=22% Similarity=0.345 Sum_probs=177.4
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|. ++.++|+++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 51 ~~~i~~~~vs~~y~-~~~~vL~~isl~i-----~~Ge~vaivG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~G~ 116 (306)
T 3nh6_A 51 KGRIEFENVHFSYA-DGRETLQDVSFTV-----MPGQTLALVGPS-----GAGKSTILRLLFRFYDI---SSGCIRIDGQ 116 (306)
T ss_dssp SCCEEEEEEEEESS-TTCEEEEEEEEEE-----CTTCEEEEESSS-----CHHHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEEcC-CCCceeeeeeEEE-----cCCCEEEEECCC-----CchHHHHHHHHHcCCCC---CCcEEEECCE
Confidence 35689999999984 4577999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++ .||+|||.++.... .. ++++++++.+++.+ ..++.++.
T Consensus 117 ~i~~~~~~~~r~~i~~v~Q~~~lf~-~Tv~eNi~~~~~~~-----~~----~~~~~~~~~~~l~~~i~~lp~gl~t~~~~ 186 (306)
T 3nh6_A 117 DISQVTQASLRSHIGVVPQDTVLFN-DTIADNIRYGRVTA-----GN----DEVEAAAQAAGIHDAIMAFPEGYRTQVGE 186 (306)
T ss_dssp ETTSBCHHHHHHTEEEECSSCCCCS-EEHHHHHHTTSTTC-----CH----HHHHHHHHHHTCHHHHHHSTTGGGCEEST
T ss_pred EcccCCHHHHhcceEEEecCCccCc-ccHHHHHHhhcccC-----CH----HHHHHHHHHhCcHHHHHhccchhhhHhcC
Confidence 9865 36889999999998885 59999999864321 11 12334444444433 23344443
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....|||||||||+|||||+.+|++|||||||+|||+.+...+.+.|+++.+ ++|+|++||++ +.+. .||+|
T Consensus 187 ----~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~~-~aD~i 258 (306)
T 3nh6_A 187 ----RGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCA--NRTTIVVAHRL-STVV-NADQI 258 (306)
T ss_dssp ----TSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHT--TSEEEEECCSH-HHHH-TCSEE
T ss_pred ----CcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcC--CCEEEEEEcCh-HHHH-cCCEE
Confidence 1234999999999999999999999999999999999999999999999964 68999999996 5665 49999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++..
T Consensus 259 ~vl~~G~iv~~G~~~el~~ 277 (306)
T 3nh6_A 259 LVIKDGCIVERGRHEALLS 277 (306)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-43 Score=358.73 Aligned_cols=206 Identities=20% Similarity=0.251 Sum_probs=182.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++ ++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| . |+|.++|+++
T Consensus 4 ~l~~~~l~~~------~vl~~vsl~i-----~~Ge~~~liG~N-----GsGKSTLlk~l~Gl~~p---~-G~i~~~g~~~ 63 (249)
T 2qi9_C 4 VMQLQDVAES------TRLGPLSGEV-----RAGEILHLVGPN-----GAGKSTLLARMAGMTSG---K-GSIQFAGQPL 63 (249)
T ss_dssp EEEEEEEEET------TTEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---E-EEEEETTEEG
T ss_pred EEEEEceEEE------EEEeeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---C-eEEEECCEEC
Confidence 4688999986 5899999999 677788888887 89999999999999998 6 9999999997
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
.. .+++.+|||+|++.+++.+||+||+.++. ... .. +++++++++.+||.+..++.+.+ |
T Consensus 64 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~-~~~---~~----~~~~~~~l~~~~l~~~~~~~~~~--------L 127 (249)
T 2qi9_C 64 EAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQ-HDK---TR----TELLNDVAGALALDDKLGRSTNQ--------L 127 (249)
T ss_dssp GGSCHHHHHHHEEEECSCCCCCTTCBHHHHHHTTC-SST---TC----HHHHHHHHHHTTCGGGTTSBGGG--------C
T ss_pred CcCCHHHHhceEEEECCCCccCCCCcHHHHHHHhh-ccC---Cc----HHHHHHHHHHcCChhHhcCChhh--------C
Confidence 53 35678999999999999999999998852 111 11 35678999999999988888776 9
Q ss_pred ChHHHHHHHHHHHHhhCCC-------eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 173 SGGERKRLSFATELLTDPA-------LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~-------lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||+|||||+.+|+ +|||||||+|||+.++..+.+.|+++++ +|+|||++|||+ +.+.++||++++
T Consensus 128 SgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~-~g~tviivtHd~-~~~~~~~d~v~~ 205 (249)
T 2qi9_C 128 SGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ-QGLAIVMSSHDL-NHTLRHAHRAWL 205 (249)
T ss_dssp CHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCSEEEE
T ss_pred CHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEE
Confidence 9999999999999999999 9999999999999999999999999987 499999999996 678889999999
Q ss_pred ecCCceEEecChHHH
Q psy2519 246 LADSRTAFIGSKDAA 260 (622)
Q Consensus 246 L~~G~iv~~G~~~~~ 260 (622)
|++|++++.|+++++
T Consensus 206 l~~G~i~~~g~~~~~ 220 (249)
T 2qi9_C 206 LKGGKMLASGRREEV 220 (249)
T ss_dssp EETTEEEEEEEHHHH
T ss_pred EECCEEEEeCCHHHH
Confidence 999999999998876
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-43 Score=357.65 Aligned_cols=214 Identities=21% Similarity=0.303 Sum_probs=176.3
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|..++.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~i~g~~~ 73 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSI-----KQGEVIGIVGRS-----GSGKSTLTKLIQRFYIP---ENGQVLIDGHDL 73 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEh
Confidence 46789999997323568999999999 677888888777 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc-------CCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI-------GSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v-------~~~~ 165 (622)
.. .+++.+|||+|++.+++ .||+||+.++.. ... .++++++++.+++.+..++.+ +.
T Consensus 74 ~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~~-----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~-- 141 (247)
T 2ff7_A 74 ALADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANP-----GMS----VEKVIYAAKLAGAHDFISELREGYNTIVGE-- 141 (247)
T ss_dssp TTSCHHHHHHHEEEECSSCCCTT-SBHHHHHTTTCT-----TCC----HHHHHHHHHHHTCHHHHHTSTTGGGCBCST--
T ss_pred hhCCHHHHHhcEEEEeCCCcccc-ccHHHHHhccCC-----CCC----HHHHHHHHHHhChHHHHHhCcchhhhhhhC--
Confidence 54 35678999999998886 599999988521 111 124566777777765443321 11
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
....|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||++++
T Consensus 142 --~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~g~tviivtH~~-~~~-~~~d~v~~ 215 (247)
T 2ff7_A 142 --QGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKIC--KGRTVIIIAHRL-STV-KNADRIIV 215 (247)
T ss_dssp --TTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECSSG-GGG-TTSSEEEE
T ss_pred --CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHc--CCCEEEEEeCCH-HHH-HhCCEEEE
Confidence 112399999999999999999999999999999999999999999999994 489999999997 455 46999999
Q ss_pred ecCCceEEecChHHHH
Q psy2519 246 LADSRTAFIGSKDAAL 261 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~ 261 (622)
|++|++++.|+++++.
T Consensus 216 l~~G~i~~~g~~~~l~ 231 (247)
T 2ff7_A 216 MEKGKIVEQGKHKELL 231 (247)
T ss_dssp EETTEEEEEECHHHHH
T ss_pred EECCEEEEECCHHHHH
Confidence 9999999999998764
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=349.29 Aligned_cols=204 Identities=17% Similarity=0.268 Sum_probs=175.4
Q ss_pred ecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 14 FKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
.|..++++||+++| |+ ++++++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 7 ~~~~l~~~~ls~~y--~~-~il~~vsl~i-----~~Ge~~~iiG~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~g 70 (214)
T 1sgw_A 7 HGSKLEIRDLSVGY--DK-PVLERITMTI-----EKGNVVNFHGPN-----GIGKTTLLKTISTYLKP---LKGEIIYNG 70 (214)
T ss_dssp --CEEEEEEEEEES--SS-EEEEEEEEEE-----ETTCCEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETT
T ss_pred CCceEEEEEEEEEe--CC-eEEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCeEEEECC
Confidence 36788999999997 66 8999999999 678888888887 89999999999999999 599999999
Q ss_pred EecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 94 KPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 94 ~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
+++. ..++.+|||+|++.+++.+||+||+.++...+.. . .+ +++++++++.+||.+. ++++.+ ||
T Consensus 71 ~~~~-~~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~-~---~~-~~~~~~~l~~~gl~~~-~~~~~~--------LS 135 (214)
T 1sgw_A 71 VPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGV-K---VN-KNEIMDALESVEVLDL-KKKLGE--------LS 135 (214)
T ss_dssp EEGG-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTC-C---CC-HHHHHHHHHHTTCCCT-TSBGGG--------SC
T ss_pred EEhh-hhcCcEEEEeCCCcCCCCCCHHHHHHHHHHhcCC-c---hH-HHHHHHHHHHcCCCcC-CCChhh--------CC
Confidence 9886 5678899999999999999999999997654321 1 11 3467889999999887 877666 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
|||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ +|+|||++||++ +++..++|+++++ +|+|
T Consensus 136 gGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~-~g~tiiivtHd~-~~~~~~~d~v~~~-~~~~ 210 (214)
T 1sgw_A 136 QGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILK-EKGIVIISSREE-LSYCDVNENLHKY-STKI 210 (214)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHH-HHSEEEEEESSC-CTTSSEEEEGGGG-BC--
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEe-CCcc
Confidence 9999999999999999999999999999999999999999999987 489999999997 5788888998866 4443
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-43 Score=354.94 Aligned_cols=217 Identities=23% Similarity=0.256 Sum_probs=179.3
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+++|. |+.++|+++|+++ ++|+.++++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 2 l~~~~l~~~y~-~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~ 67 (243)
T 1mv5_A 2 LSARHVDFAYD-DSEQILRDISFEA-----QPNSIIAFAGPS-----GGGKSTIFSLLERFYQP---TAGEITIDGQPID 67 (243)
T ss_dssp EEEEEEEECSS-SSSCSEEEEEEEE-----CTTEEEEEECCT-----TSSHHHHHHHHTTSSCC---SBSCEEETTEEST
T ss_pred EEEEEEEEEeC-CCCceEEEeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCcEEEECCEEhh
Confidence 67899999973 5677999999999 677788888777 89999999999999998 5899999999985
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC---CcCCCCcc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG---SSSITQKV 170 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~---~~~~~~~~ 170 (622)
. .+++.+|||+|++.+++ .||+||+.++... ... .++++++++.+++.+..++... +..-....
T Consensus 68 ~~~~~~~~~~i~~v~q~~~l~~-~tv~enl~~~~~~----~~~----~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~ 138 (243)
T 1mv5_A 68 NISLENWRSQIGFVSQDSAIMA-GTIRENLTYGLEG----DYT----DEDLWQVLDLAFARSFVENMPDQLNTEVGERGV 138 (243)
T ss_dssp TTSCSCCTTTCCEECCSSCCCC-EEHHHHTTSCTTS----CSC----HHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSB
T ss_pred hCCHHHHHhhEEEEcCCCcccc-ccHHHHHhhhccC----CCC----HHHHHHHHHHhChHHHHHhCccchhchhccCcC
Confidence 3 36788999999998887 4999999875211 112 2346788999999877665421 00000123
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
.|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||++++|++|+
T Consensus 139 ~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~G~ 214 (243)
T 1mv5_A 139 KISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLM--KGRTTLVIAHRL-STI-VDADKIYFIEKGQ 214 (243)
T ss_dssp CCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHH--TTSEEEEECCSH-HHH-HHCSEEEEEETTE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhc--CCCEEEEEeCCh-HHH-HhCCEEEEEECCE
Confidence 499999999999999999999999999999999999999999999996 489999999996 455 4699999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++..|+++++.
T Consensus 215 i~~~g~~~~~~ 225 (243)
T 1mv5_A 215 ITGSGKHNELV 225 (243)
T ss_dssp ECCCSCHHHHH
T ss_pred EEEeCCHHHHH
Confidence 99999998765
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-42 Score=352.94 Aligned_cols=206 Identities=21% Similarity=0.193 Sum_probs=179.8
Q ss_pred CcccCCccccccccc----eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 17 NEEVPNVDFSEIVGS----VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~----~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+++++||+++| ++ .++++++|+++ . |+.+.++|+| |||||||||+|+|+. | .+|+|.++
T Consensus 1 ml~~~~l~~~y--~~~~~~~~il~~vsl~i-----~-Ge~~~i~G~N-----GsGKSTLlk~l~Gl~-p---~~G~I~~~ 63 (263)
T 2pjz_A 1 MIQLKNVGITL--SGKGYERFSLENINLEV-----N-GEKVIILGPN-----GSGKTTLLRAISGLL-P---YSGNIFIN 63 (263)
T ss_dssp CEEEEEEEEEE--EEETTEEEEEEEEEEEE-----C-SSEEEEECCT-----TSSHHHHHHHHTTSS-C---CEEEEEET
T ss_pred CEEEEEEEEEe--CCCCccceeEEeeeEEE-----C-CEEEEEECCC-----CCCHHHHHHHHhCCC-C---CCcEEEEC
Confidence 36789999997 44 77999999999 6 7777888776 899999999999999 8 49999999
Q ss_pred CEecCc-cccccEE-EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCc
Q psy2519 93 GKPVEG-KFRSACG-FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQK 169 (622)
Q Consensus 93 G~~~~~-~~r~~ig-yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~ 169 (622)
|+++.. ..++.+| ||+|++.+ .+||+||+.++..... . ..++++++++.+||. +..++++++
T Consensus 64 g~~~~~~~~~~~i~~~v~Q~~~l--~~tv~enl~~~~~~~~---~----~~~~~~~~l~~~gl~~~~~~~~~~~------ 128 (263)
T 2pjz_A 64 GMEVRKIRNYIRYSTNLPEAYEI--GVTVNDIVYLYEELKG---L----DRDLFLEMLKALKLGEEILRRKLYK------ 128 (263)
T ss_dssp TEEGGGCSCCTTEEECCGGGSCT--TSBHHHHHHHHHHHTC---C----CHHHHHHHHHHTTCCGGGGGSBGGG------
T ss_pred CEECcchHHhhheEEEeCCCCcc--CCcHHHHHHHhhhhcc---h----HHHHHHHHHHHcCCChhHhcCChhh------
Confidence 998753 2267899 99999877 8999999999765431 1 134578899999998 888888776
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc-ceeeecC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD-KIILLAD 248 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D-~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++.+.|+++++ |||++|||+ +++.++|| ++++|++
T Consensus 129 --LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~----tviivtHd~-~~~~~~~d~~i~~l~~ 201 (263)
T 2pjz_A 129 --LSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK----EGILVTHEL-DMLNLYKEYKAYFLVG 201 (263)
T ss_dssp --SCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS----EEEEEESCG-GGGGGCTTSEEEEEET
T ss_pred --CCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC----cEEEEEcCH-HHHHHhcCceEEEEEC
Confidence 999999999999999999999999999999999999999999998842 999999996 57778999 9999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 202 G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 202 NRLQGPISVSELL 214 (263)
T ss_dssp TEEEEEEEHHHHH
T ss_pred CEEEEecCHHHHH
Confidence 9999999998775
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-42 Score=347.90 Aligned_cols=216 Identities=25% Similarity=0.359 Sum_probs=174.7
Q ss_pred ecCCcccCCccccccccc-eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVGS-VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g~-~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+++++||+++|..++ .++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| +|+|.++
T Consensus 14 ~~~~l~i~~l~~~y~~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~~----~G~I~i~ 79 (260)
T 2ghi_A 14 FGVNIEFSDVNFSYPKQTNHRTLKSINFFI-----PSGTTCALVGHT-----GSGKSTIAKLLYRFYDA----EGDIKIG 79 (260)
T ss_dssp HCCCEEEEEEEECCTTCCSSCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC----EEEEEET
T ss_pred cCCeEEEEEEEEEeCCCCcCceeEeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhccCCC----CeEEEEC
Confidence 346789999999973221 46999999999 677888888777 89999999999999875 7999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCcc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRI 161 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v 161 (622)
|+++.. .+++.+|||+|++.+++ .||+||+.++. .. ... +++.++++.+++.+. .++.+
T Consensus 80 g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~tv~enl~~~~-~~----~~~----~~~~~~l~~~~l~~~~~~l~~~~~~~~ 149 (260)
T 2ghi_A 80 GKNVNKYNRNSIRSIIGIVPQDTILFN-ETIKYNILYGK-LD----ATD----EEVIKATKSAQLYDFIEALPKKWDTIV 149 (260)
T ss_dssp TEEGGGBCHHHHHTTEEEECSSCCCCS-EEHHHHHHTTC-TT----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCEE
T ss_pred CEEhhhcCHHHHhccEEEEcCCCcccc-cCHHHHHhccC-CC----CCH----HHHHHHHHHhCCHHHHHhccccccccc
Confidence 999854 35788999999998886 59999998852 11 111 234566666665432 23322
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
+.. + ..|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|++++ .|+|||++||++ +.+ +.||
T Consensus 150 ~~~-~---~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~--~~~tviivtH~~-~~~-~~~d 221 (260)
T 2ghi_A 150 GNK-G---MKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLR--KNRTLIIIAHRL-STI-SSAE 221 (260)
T ss_dssp SSS-S---BCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHT--TTSEEEEECSSG-GGS-TTCS
T ss_pred cCC-c---CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhc--CCCEEEEEcCCH-HHH-HhCC
Confidence 220 2 2399999999999999999999999999999999999999999999995 379999999997 455 4699
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
++++|++|+++..|+++++.
T Consensus 222 ~i~~l~~G~i~~~g~~~~l~ 241 (260)
T 2ghi_A 222 SIILLNKGKIVEKGTHKDLL 241 (260)
T ss_dssp EEEEEETTEEEEEECHHHHH
T ss_pred EEEEEECCEEEEECCHHHHH
Confidence 99999999999999998775
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-42 Score=370.00 Aligned_cols=219 Identities=18% Similarity=0.223 Sum_probs=183.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|..|+.++|+++||++ ++|+.+.++|+| |||||||||+|+|+.+ .+|+|.++|+
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i-----~~Ge~~~llGps-----GsGKSTLLr~iaGl~~----~~G~I~i~G~ 82 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSI-----SPGQRVGLLGRT-----GSGKSTLLSAFLRLLN----TEGEIQIDGV 82 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHHTCSE----EEEEEEESSC
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEE-----cCCCEEEEECCC-----CChHHHHHHHHhCCCC----CCeEEEECCE
Confidence 4578999999998657788999999999 678888888876 8999999999999986 3899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCc---CCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSS---SIT 167 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~---~~~ 167 (622)
++.. .+++.+|||||++.+++ +||+||+.+.. ... +++++++++.++|.+..++++... .-.
T Consensus 83 ~i~~~~~~~~rr~ig~v~Q~~~lf~-~tv~enl~~~~------~~~----~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~ 151 (390)
T 3gd7_A 83 SWDSITLEQWRKAFGVIPQKVFIFS-GTFRKNLDPNA------AHS----DQEIWKVADEVGLRSVIEQFPGKLDFVLVD 151 (390)
T ss_dssp BTTSSCHHHHHHTEEEESCCCCCCS-EEHHHHHCTTC------CSC----HHHHHHHHHHTTCHHHHTTSTTGGGCEECT
T ss_pred ECCcCChHHHhCCEEEEcCCcccCc-cCHHHHhhhcc------ccC----HHHHHHHHHHhCCHHHHhhccccccccccc
Confidence 9864 35788999999999987 59999996421 111 245778999999988777764320 000
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
....|||||||||+|||||+.+|++|||||||+|||+..+.++.+.|+++. .++|+|++|||+ + ....||||++|+
T Consensus 152 ~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~--~~~tvi~vtHd~-e-~~~~aDri~vl~ 227 (390)
T 3gd7_A 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAF--ADCTVILCEARI-E-AMLECDQFLVIE 227 (390)
T ss_dssp TTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTT--TTSCEEEECSSS-G-GGTTCSEEEEEE
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHh--CCCEEEEEEcCH-H-HHHhCCEEEEEE
Confidence 122399999999999999999999999999999999999999999999874 479999999996 3 446799999999
Q ss_pred CCceEEecChHHHHH
Q psy2519 248 DSRTAFIGSKDAALA 262 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~ 262 (622)
+|+++..|+++++.+
T Consensus 228 ~G~i~~~g~~~el~~ 242 (390)
T 3gd7_A 228 ENKVRQYDSILELYH 242 (390)
T ss_dssp TTEEEEESSHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998863
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-40 Score=333.50 Aligned_cols=204 Identities=22% Similarity=0.307 Sum_probs=163.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..|+.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 6 ~l~~~~l~~~y~~~~~~il~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~g--- 69 (229)
T 2pze_A 6 EVVMENVTAFWEEGGTPVLKDINFKI-----ERGQLLAVAGST-----GAGKTSLLMMIMGELEP---SEGKIKHSG--- 69 (229)
T ss_dssp EEEEEEEEECSSTTSCCSEEEEEEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEECS---
T ss_pred eEEEEEEEEEeCCCCceeeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CccEEEECC---
Confidence 47899999998545678999999999 677888888877 89999999999999999 599999998
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-------CccCCcCCCCc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-------TRIGSSSITQK 169 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v~~~~~~~~ 169 (622)
.+|||+|++.+++. ||+||+.++... ... +.++.++.+++.+..+ +.++. ..
T Consensus 70 ------~i~~v~q~~~~~~~-tv~enl~~~~~~------~~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~----~~ 128 (229)
T 2pze_A 70 ------RISFCSQFSWIMPG-TIKENIIFGVSY------DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE----GG 128 (229)
T ss_dssp ------CEEEECSSCCCCSB-CHHHHHHTTSCC------CHH----HHHHHHHHTTCHHHHTTSTTGGGSCBCT----TC
T ss_pred ------EEEEEecCCcccCC-CHHHHhhccCCc------ChH----HHHHHHHHhCcHHHHHhCcccccccccC----CC
Confidence 39999999988886 999999885311 111 1223444444433222 22221 12
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHH-HHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRM-MRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~-l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
..|||||||||+|||||+.+|++|||||||+|||+.++..+.+. +++++ .|+|||++||++ +.+ +.||++++|++
T Consensus 129 ~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~--~~~tvi~vtH~~-~~~-~~~d~v~~l~~ 204 (229)
T 2pze_A 129 ITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKILILHE 204 (229)
T ss_dssp TTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHCSEEEEEET
T ss_pred CcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhh--CCCEEEEEcCCh-HHH-HhCCEEEEEEC
Confidence 23999999999999999999999999999999999999999997 46664 379999999996 455 46999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 205 G~i~~~g~~~~~~ 217 (229)
T 2pze_A 205 GSSYFYGTFSELQ 217 (229)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEECCHHHHH
Confidence 9999999998764
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-40 Score=334.00 Aligned_cols=206 Identities=18% Similarity=0.320 Sum_probs=162.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+++|..++.++|+++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i-----~~Ge~~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g--- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSI-----PEGALVAVVGQV-----GCGKSSLLSALLAEMDK---VEGHVAIKG--- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTCSEE---EEEEEEECS---
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCceEEECC---
Confidence 47899999997322578999999999 678888888777 89999999999999998 699999998
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-----ccCCccCCcCCCCccc
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-----SQHTRIGSSSITQKVV 171 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-----~~~~~v~~~~~~~~~g 171 (622)
.+|||+|++.+ +.+||+||+.++.... . ...+......++.+.+++.+ ..++.+.+
T Consensus 67 ------~i~~v~Q~~~~-~~~tv~enl~~~~~~~--~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-------- 127 (237)
T 2cbz_A 67 ------SVAYVPQQAWI-QNDSLRENILFGCQLE--E--PYYRSVIQACALLPDLEILPSGDRTEIGEKGVN-------- 127 (237)
T ss_dssp ------CEEEECSSCCC-CSEEHHHHHHTTSCCC--T--THHHHHHHHTTCHHHHTTSTTGGGSEESTTSBC--------
T ss_pred ------EEEEEcCCCcC-CCcCHHHHhhCccccC--H--HHHHHHHHHHhhHHHHHhccccccccccCCCCC--------
Confidence 39999999764 6889999998864221 1 11111111112233444322 12344333
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHH---HHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMR---ELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~---~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+ +++ .|+|||++||++. .+ +.||++++|++
T Consensus 128 LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~--~~~tviivtH~~~-~~-~~~d~v~~l~~ 203 (237)
T 2cbz_A 128 LSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGML--KNKTRILVTHSMS-YL-PQVDVIIVMSG 203 (237)
T ss_dssp CCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTT--TTSEEEEECSCST-TG-GGSSEEEEEET
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhc--CCCEEEEEecChH-HH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999999999995 443 4899999999973 55 57999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|+++..|+++++.
T Consensus 204 G~i~~~g~~~~~~ 216 (237)
T 2cbz_A 204 GKISEMGSYQELL 216 (237)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEeCCHHHHh
Confidence 9999999998765
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-41 Score=378.29 Aligned_cols=217 Identities=20% Similarity=0.258 Sum_probs=178.1
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~isl~i-----~~Ge~~~ivG~s-----GsGKSTll~~l~g~~~~---~~G~i~i~g~ 405 (587)
T 3qf4_A 339 EGSVSFENVEFRYFENTDPVLSGVNFSV-----KPGSLVAVLGET-----GSGKSTLMNLIPRLIDP---ERGRVEVDEL 405 (587)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEE-----CTTCEEEEECSS-----SSSHHHHHHTTTTSSCC---SEEEEEESSS
T ss_pred CCcEEEEEEEEEcCCCCCcceeceEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCccC---CCcEEEECCE
Confidence 4578999999998666778999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++.... +.++ +.+.++..++ .+..++.+++
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~~~----~~~~~~~~~~~~~i~~l~~g~~~~~~~ 475 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQETVLFSG-TIKENLKWGREDA-----TDDE----IVEAAKIAQIHDFIISLPEGYDSRVER 475 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSSCCCCSE-EHHHHHTTTCSSC-----CHHH----HHHHHHHTTCHHHHHTSSSGGGCEECS
T ss_pred EcccCCHHHHHhheEEECCCCcCcCc-cHHHHHhccCCCC-----CHHH----HHHHHHHhCcHHHHHhcccchhhHhcC
Confidence 9865 368899999999998875 9999998763211 1111 2222333322 2334455544
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +|+|+|++||++ +.+ +.||||
T Consensus 476 ----~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l-~~~-~~~d~i 547 (587)
T 3qf4_A 476 ----GGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYT--KGCTTFIITQKI-PTA-LLADKI 547 (587)
T ss_dssp ----SSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHS--TTCEEEEEESCH-HHH-TTSSEE
T ss_pred ----CCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCh-HHH-HhCCEE
Confidence 123399999999999999999999999999999999999999999999985 489999999996 444 689999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++|+.+
T Consensus 548 ~vl~~G~i~~~g~~~el~~ 566 (587)
T 3qf4_A 548 LVLHEGKVAGFGTHKELLE 566 (587)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-40 Score=374.41 Aligned_cols=217 Identities=22% Similarity=0.314 Sum_probs=179.8
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+..++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+
T Consensus 337 ~~~i~~~~v~~~y~~~~~~~l~~isl~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYNDNEAPILKDINLSI-----EKGETVAFVGMS-----GGGKSTLINLIPRFYDV---TSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHTTTTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEEcCCCCCcceeeeEEEE-----CCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCcEEEECCE
Confidence 4568999999998655678999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++... .+. +++.+.++..++. +..++.+++
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~~~-----~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGRPT-----ATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGCSS-----CCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EhhhCCHHHHhhheEEEeCCCccCcc-cHHHHHhcCCCC-----CCH----HHHHHHHHHhCcHHHHHhCcchhhhhhcc
Confidence 9865 368899999999998876 999999886311 111 2234445555443 334555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.++++. +|+|+|++||++ +.+ +.||||
T Consensus 474 ----~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~~-~~~d~i 545 (578)
T 4a82_A 474 ----RGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS--KDRTTLIVAHRL-STI-THADKI 545 (578)
T ss_dssp ----GGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT--TTSEEEEECSSG-GGT-TTCSEE
T ss_pred ----CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HcCCEE
Confidence 123499999999999999999999999999999999999999999999985 478999999997 455 569999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++|+.+
T Consensus 546 ~~l~~G~i~~~g~~~el~~ 564 (578)
T 4a82_A 546 VVIENGHIVETGTHRELIA 564 (578)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-40 Score=370.75 Aligned_cols=218 Identities=23% Similarity=0.299 Sum_probs=181.2
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~v~~~i-----~~G~~~~ivG~s-----GsGKSTLl~~l~g~~~p---~~G~i~~~g~ 405 (582)
T 3b60_A 339 TGDLEFRNVTFTYPGREVPALRNINLKI-----PAGKTVALVGRS-----GSGKSTIASLITRFYDI---DEGHILMDGH 405 (582)
T ss_dssp CCCEEEEEEEECSSSSSCCSEEEEEEEE-----CTTCEEEEEECT-----TSSHHHHHHHHTTTTCC---SEEEEEETTE
T ss_pred CCcEEEEEEEEEcCCCCCccccceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhhccCC---CCCeEEECCE
Confidence 4568999999998423367999999999 788888888887 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-------cCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-------QHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-------~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++. ||+||+.++.. . ..+ +++++++++.+++.+. .|+.+++
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~-~---~~~----~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~ 476 (582)
T 3b60_A 406 DLREYTLASLRNQVALVSQNVHLFND-TVANNIAYART-E---EYS----REQIEEAARMAYAMDFINKMDNGLDTIIGE 476 (582)
T ss_dssp ETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTT-S---CCC----HHHHHHHHHTTTCHHHHHHSTTGGGSBCCT
T ss_pred EccccCHHHHHhhCeEEccCCcCCCC-CHHHHHhccCC-C---CCC----HHHHHHHHHHcCCHHHHHhccccccccccC
Confidence 9864 367889999999998875 99999998631 1 112 2345667777776543 3444544
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.++.++.+.|+++++ |+|+|++||++ +.+ +.|||+
T Consensus 477 ----~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~~-~~~-~~~d~i 548 (582)
T 3b60_A 477 ----NGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL-STI-EQADEI 548 (582)
T ss_dssp ----TSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG-GGT-TTCSEE
T ss_pred ----CCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhC--CCEEEEEeccH-HHH-HhCCEE
Confidence 1234999999999999999999999999999999999999999999999963 89999999997 455 579999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++.+
T Consensus 549 ~~l~~G~i~~~g~~~~l~~ 567 (582)
T 3b60_A 549 VVVEDGIIVERGTHSELLA 567 (582)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEecCHHHHHH
Confidence 9999999999999998753
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-40 Score=369.90 Aligned_cols=217 Identities=23% Similarity=0.298 Sum_probs=180.6
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|+.++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 339 ~~~i~~~~v~~~y~~~~~~~l~~i~l~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 405 (582)
T 3b5x_A 339 NGEVDVKDVTFTYQGKEKPALSHVSFSI-----PQGKTVALVGRS-----GSGKSTIANLFTRFYDV---DSGSICLDGH 405 (582)
T ss_pred CCeEEEEEEEEEcCCCCccccccceEEE-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCCEEEECCE
Confidence 3568999999998433367999999999 678888888776 89999999999999999 5899999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc-------CCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ-------HTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~-------~~~v~~ 163 (622)
++.+ .+|+.+|||+|++.+++. ||+||+.++.. + ..+ +++++++++.+++.+.. |+.+++
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~~~l~~~-tv~eni~~~~~---~-~~~----~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~ 476 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQNVHLFND-TIANNIAYAAE---G-EYT----REQIEQAARQAHAMEFIENMPQGLDTVIGE 476 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCCCccccc-cHHHHHhccCC---C-CCC----HHHHHHHHHHCCCHHHHHhCcccccchhcC
Confidence 9854 467899999999998875 99999998631 1 112 23456777777775443 344443
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.++.++.+.|++++ +|+|+|++||++ +.+ +.||++
T Consensus 477 ----~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~~-~~~-~~~d~i 548 (582)
T 3b5x_A 477 ----NGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQ--KNKTVLVIAHRL-STI-EQADEI 548 (582)
T ss_pred ----CCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HhCCEE
Confidence 123499999999999999999999999999999999999999999999986 389999999997 455 579999
Q ss_pred eeecCCceEEecChHHHH
Q psy2519 244 ILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~ 261 (622)
++|++|++++.|+++++.
T Consensus 549 ~~l~~G~i~~~g~~~~l~ 566 (582)
T 3b5x_A 549 LVVDEGEIIERGRHADLL 566 (582)
T ss_pred EEEECCEEEEECCHHHHH
Confidence 999999999999999875
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-40 Score=370.39 Aligned_cols=216 Identities=21% Similarity=0.254 Sum_probs=176.6
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
...++++||+|+|. ++.++|+++|+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.+||+
T Consensus 352 ~~~i~~~~v~~~y~-~~~~~l~~isl~i-----~~G~~~~ivG~s-----GsGKSTll~~l~g~~~p---~~G~i~~~g~ 417 (598)
T 3qf4_B 352 RGEIEFKNVWFSYD-KKKPVLKDITFHI-----KPGQKVALVGPT-----GSGKTTIVNLLMRFYDV---DRGQILVDGI 417 (598)
T ss_dssp CCCEEEEEEECCSS-SSSCSCCSEEEEC-----CTTCEEEEECCT-----TSSTTHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CCeEEEEEEEEECC-CCCccccceEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCcCC---CCeEEEECCE
Confidence 45689999999983 4567999999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-------ccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-------SQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-------~~~~~v~~ 163 (622)
++.. .+|+++|||+|++.+++. ||+||+.++.... ++ +++.++++..++.+ ..++.+++
T Consensus 418 ~i~~~~~~~~r~~i~~v~Q~~~lf~~-tv~eni~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~g~~t~~~~ 487 (598)
T 3qf4_B 418 DIRKIKRSSLRSSIGIVLQDTILFST-TVKENLKYGNPGA-----TD----EEIKEAAKLTHSDHFIKHLPEGYETVLTD 487 (598)
T ss_dssp EGGGSCHHHHHHHEEEECTTCCCCSS-BHHHHHHSSSTTC-----CT----THHHHHTTTTTCHHHHHTSTTGGGCBCHH
T ss_pred EhhhCCHHHHHhceEEEeCCCccccc-cHHHHHhcCCCCC-----CH----HHHHHHHHHhCCHHHHHhccccccchhcC
Confidence 9865 368899999999988864 9999998853211 11 12334444444433 33444433
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
....||||||||++|||||+.+|++|+|||||++||+.+..++.+.|+++. +|+|+|++||++. .+ +.||+|
T Consensus 488 ----~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l~-~~-~~~d~i 559 (598)
T 3qf4_B 488 ----NGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLM--EGKTSIIIAHRLN-TI-KNADLI 559 (598)
T ss_dssp ----HHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHH--TTSEEEEESCCTT-HH-HHCSEE
T ss_pred ----CCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHc--CCCEEEEEecCHH-HH-HcCCEE
Confidence 123499999999999999999999999999999999999999999999995 4899999999974 55 459999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++.+
T Consensus 560 ~~l~~G~i~~~g~~~~l~~ 578 (598)
T 3qf4_B 560 IVLRDGEIVEMGKHDELIQ 578 (598)
T ss_dssp EEECSSSEEECSCHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998763
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-37 Score=321.69 Aligned_cols=203 Identities=20% Similarity=0.298 Sum_probs=150.3
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
.....++++||++. ..++++++|+++ .+|+.++++|+| |||||||||+|+|+.+| .+|+|.++
T Consensus 36 ~~~~~l~~~~l~~~----~~~vl~~isl~i-----~~Ge~~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~~ 98 (290)
T 2bbs_A 36 NGDDSLSFSNFSLL----GTPVLKDINFKI-----ERGQLLAVAGST-----GAGKTSLLMMIMGELEP---SEGKIKHS 98 (290)
T ss_dssp ------------------CCCSEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHTTSSCE---EEEEEECC
T ss_pred CCCceEEEEEEEEc----CceEEEeeEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcCCCC---CCcEEEEC
Confidence 34467899999985 257899999999 678888888887 89999999999999998 69999999
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC-------CccCCcC
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH-------TRIGSSS 165 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~-------~~v~~~~ 165 (622)
| .+|||+|++.+++. ||+||+. +. .. ... ++++.++.+++.+..+ +.++.
T Consensus 99 g---------~i~~v~Q~~~l~~~-tv~enl~-~~--~~----~~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~-- 155 (290)
T 2bbs_A 99 G---------RISFCSQNSWIMPG-TIKENII-GV--SY----DEY----RYRSVIKACQLEEDISKFAEKDNIVLGE-- 155 (290)
T ss_dssp S---------CEEEECSSCCCCSS-BHHHHHH-TT--CC----CHH----HHHHHHHHTTCHHHHHTSTTGGGCBC----
T ss_pred C---------EEEEEeCCCccCcc-cHHHHhh-Cc--cc----chH----HHHHHHHHhChHHHHHhccccccchhcC--
Confidence 8 49999999988885 9999997 32 11 111 1233444455533221 12221
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHH-HHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMM-RELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l-~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|||||||+|||+.++.++.+.+ ++++ .|+|||++||++ +.+ +.||+++
T Consensus 156 --~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~--~~~tviivtHd~-~~~-~~~d~i~ 229 (290)
T 2bbs_A 156 --GGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLM--ANKTRILVTSKM-EHL-KKADKIL 229 (290)
T ss_dssp ----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCT--TTSEEEEECCCH-HHH-HHSSEEE
T ss_pred --ccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhh--CCCEEEEEecCH-HHH-HcCCEEE
Confidence 01239999999999999999999999999999999999999999974 5664 489999999996 455 4699999
Q ss_pred eecCCceEEecChHHHH
Q psy2519 245 LLADSRTAFIGSKDAAL 261 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~ 261 (622)
+|++|++++.|+++++.
T Consensus 230 ~l~~G~i~~~g~~~~l~ 246 (290)
T 2bbs_A 230 ILHEGSSYFYGTFSELQ 246 (290)
T ss_dssp EEETTEEEEEECHHHHH
T ss_pred EEECCeEEEeCCHHHHh
Confidence 99999999999998875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=8e-38 Score=382.01 Aligned_cols=220 Identities=18% Similarity=0.253 Sum_probs=185.8
Q ss_pred ecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..+.++++||+|+|+.+ +.++|+|+|+++ ++|+++.|+|++ |||||||+++|.|+..| .+|+|.+|
T Consensus 1073 ~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I-----~~Ge~vaIVG~S-----GsGKSTL~~lL~rl~~p---~~G~I~iD 1139 (1321)
T 4f4c_A 1073 LYGKVIFKNVRFAYPERPEIEILKGLSFSV-----EPGQTLALVGPS-----GCGKSTVVALLERFYDT---LGGEIFID 1139 (1321)
T ss_dssp CCCCEEEEEEEECCTTSCSSCSEEEEEEEE-----CTTCEEEEECST-----TSSTTSHHHHHTTSSCC---SSSEEEET
T ss_pred CCCeEEEEEEEEeCCCCCCCccccceeEEE-----CCCCEEEEECCC-----CChHHHHHHHHhcCccC---CCCEEEEC
Confidence 34578999999999644 468999999999 788888888775 89999999999999999 58999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCcc
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRI 161 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v 161 (622)
|.|+.. .+|+++|||||++.+|+. |++|||.|+... ...+. +.+.++++..++ ++..|+.+
T Consensus 1140 G~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNI~~gld~---~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~v 1211 (1321)
T 4f4c_A 1140 GSEIKTLNPEHTRSQIAIVSQEPTLFDC-SIAENIIYGLDP---SSVTM----AQVEEAARLANIHNFIAELPEGFETRV 1211 (1321)
T ss_dssp TEETTTBCHHHHHTTEEEECSSCCCCSE-EHHHHHSSSSCT---TTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEE
T ss_pred CEEhhhCCHHHHHhheEEECCCCEeeCc-cHHHHHhccCCC---CCCCH----HHHHHHHHHhCChHHHHcCcCCCCCEe
Confidence 999976 489999999999999877 999999876321 12222 234555665554 45678888
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
|+ ....||||||||++|||||+.+|+||+||||||+||+.+...|.+.|+++. .|+|+|+++|.++ . ...||
T Consensus 1212 ge----~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~--~~~TvI~IAHRLs-T-i~~aD 1283 (1321)
T 4f4c_A 1212 GD----RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAR--EGRTCIVIAHRLN-T-VMNAD 1283 (1321)
T ss_dssp TT----TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTS--SSSEEEEECSSSS-T-TTTCS
T ss_pred cC----CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHc--CCCEEEEeccCHH-H-HHhCC
Confidence 86 234599999999999999999999999999999999999999999999876 4899999999973 3 46799
Q ss_pred ceeeecCCceEEecChHHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~~ 262 (622)
||++|++|+|++.|+++++++
T Consensus 1284 ~I~Vld~G~IvE~Gth~eLl~ 1304 (1321)
T 4f4c_A 1284 CIAVVSNGTIIEKGTHTQLMS 1304 (1321)
T ss_dssp EEEEESSSSEEEEECHHHHHH
T ss_pred EEEEEECCEEEEECCHHHHHh
Confidence 999999999999999998874
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-36 Score=372.14 Aligned_cols=218 Identities=23% Similarity=0.283 Sum_probs=184.3
Q ss_pred eecCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 13 LFKNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
..++.++++||+|+|+.. +.++|+|+|+++ ++|+.++++|++ |||||||+++|.|..+| .+|+|.+
T Consensus 411 ~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i-----~~G~~vaivG~s-----GsGKSTll~ll~~~~~~---~~G~I~i 477 (1321)
T 4f4c_A 411 KIKGDITVENVHFTYPSRPDVPILRGMNLRV-----NAGQTVALVGSS-----GCGKSTIISLLLRYYDV---LKGKITI 477 (1321)
T ss_dssp CCCCCEEEEEEEECCSSSTTSCSEEEEEEEE-----CTTCEEEEEECS-----SSCHHHHHHHHTTSSCC---SEEEEEE
T ss_pred CCCCcEEEEEeeeeCCCCCCCceeeceEEee-----cCCcEEEEEecC-----CCcHHHHHHHhcccccc---ccCcccC
Confidence 345678999999999543 578999999999 678788888775 89999999999999999 5999999
Q ss_pred CCEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCc
Q psy2519 92 NGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTR 160 (622)
Q Consensus 92 ~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~ 160 (622)
||+|+.. .+|++||||+|++.++.. ||+|||.|+..- .+.+ ++.++++..+ |++..|+.
T Consensus 478 dG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~-TI~eNI~~g~~~-----~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~ 547 (1321)
T 4f4c_A 478 DGVDVRDINLEFLRKNVAVVSQEPALFNC-TIEENISLGKEG-----ITRE----EMVAACKMANAEKFIKTLPNGYNTL 547 (1321)
T ss_dssp TTEETTTSCHHHHHHHEEEECSSCCCCSE-EHHHHHHTTCTT-----CCHH----HHHHHHHHTTCHHHHHHSTTTTSSE
T ss_pred CCccchhccHHHHhhcccccCCcceeeCC-chhHHHhhhccc-----chHH----HHHHHHHHccchhHHHcCCCCCccE
Confidence 9999976 478999999999998866 999999987321 1222 2344444443 45667888
Q ss_pred cCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 161 IGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 161 v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
+|+ ....||||||||++||||+..+|+||+||||||+||+.+...+.+.|+++.+ |+|+|++||+++ ..+.|
T Consensus 548 vGe----~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrls--~i~~a 619 (1321)
T 4f4c_A 548 VGD----RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRLS--TIRNA 619 (1321)
T ss_dssp ESS----SSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCTT--TTTTC
T ss_pred ecC----CCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhC--CCEEEEEcccHH--HHHhC
Confidence 887 2345999999999999999999999999999999999999999999999874 899999999973 45789
Q ss_pred cceeeecCCceEEecChHHHH
Q psy2519 241 DKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 241 D~v~~L~~G~iv~~G~~~~~~ 261 (622)
|+|++|++|+|++.|+.+|+.
T Consensus 620 D~Iivl~~G~ive~Gth~eL~ 640 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALM 640 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHH
T ss_pred CEEEEeeCCeeeccCCHHHHH
Confidence 999999999999999999886
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-36 Score=367.17 Aligned_cols=219 Identities=21% Similarity=0.289 Sum_probs=179.0
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+..++++||+|+|+.+ +.++|+++|+++ ++|+.+.++|++ |||||||+++|.|+.+| .+|+|.++|
T Consensus 385 ~g~i~~~~v~~~y~~~~~~~vL~~isl~i-----~~G~~~~ivG~s-----GsGKSTl~~ll~g~~~~---~~G~i~i~g 451 (1284)
T 3g5u_A 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKV-----KSGQTVALVGNS-----GCGKSTTVQLMQRLYDP---LDGMVSIDG 451 (1284)
T ss_dssp CCCEEEEEEEECCSSTTSCCSEEEEEEEE-----CTTCEEEEECCS-----SSSHHHHHHHTTTSSCC---SEEEEEETT
T ss_pred CCeEEEEEEEEEcCCCCCCcceecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEECC
Confidence 4568999999998543 357999999999 778888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHH-----HHHHHHHhCCCcccCCccCCc
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL-----INSLLIELGLMNSQHTRIGSS 164 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~-----v~~~l~~lgL~~~~~~~v~~~ 164 (622)
+++.. .+|+.+|||+|++.+++. ||+||+.++.... +.++..+. +++.++. +.+..|+.+|+
T Consensus 452 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~eNi~~g~~~~-----~~~~~~~~~~~~~~~~~i~~--l~~g~~t~~~~- 522 (1284)
T 3g5u_A 452 QDIRTINVRYLREIIGVVSQEPVLFAT-TIAENIRYGREDV-----TMDEIEKAVKEANAYDFIMK--LPHQFDTLVGE- 522 (1284)
T ss_dssp EEGGGSCHHHHHHHEEEECSSCCCCSS-CHHHHHHHHCSSC-----CHHHHHHHHHHTTCHHHHHH--STTGGGCCCSS-
T ss_pred EEHHhCCHHHHHhheEEEcCCCccCCc-cHHHHHhcCCCCC-----CHHHHHHHHHHhCcHHHHHh--ccccccccccC-
Confidence 99865 468899999999999876 9999999974211 22221111 1233333 33455666665
Q ss_pred CCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 165 SITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 165 ~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
....||||||||++|||||+.+|++|+||||||+||+.+...+.+.++++. .|+|+|++||++ +.+ +.||+|+
T Consensus 523 ---~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~itH~l-~~i-~~~d~i~ 595 (1284)
T 3g5u_A 523 ---RGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIVIAHRL-STV-RNADVIA 595 (1284)
T ss_dssp ---SSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEEECSCH-HHH-TTCSEEE
T ss_pred ---CCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHc--CCCEEEEEecCH-HHH-HcCCEEE
Confidence 123499999999999999999999999999999999999999999999875 489999999996 455 4599999
Q ss_pred eecCCceEEecChHHHHH
Q psy2519 245 LLADSRTAFIGSKDAALA 262 (622)
Q Consensus 245 ~L~~G~iv~~G~~~~~~~ 262 (622)
+|++|++++.|+++++.+
T Consensus 596 vl~~G~i~~~g~~~~l~~ 613 (1284)
T 3g5u_A 596 GFDGGVIVEQGNHDELMR 613 (1284)
T ss_dssp ECSSSCCCCEECHHHHHH
T ss_pred EEECCEEEEECCHHHHHh
Confidence 999999999999998763
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-36 Score=364.59 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=178.7
Q ss_pred cCCcccCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 15 KNNEEVPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
+..++++||+|+|+.+ +.++|+++|+++ ++|+.+.++|+| |||||||+++|.|+.+| .+|+|.+||
T Consensus 1028 ~g~i~~~~v~~~y~~~~~~~~l~~vsl~i-----~~Ge~v~ivG~s-----GsGKSTl~~~l~g~~~p---~~G~I~i~g 1094 (1284)
T 3g5u_A 1028 EGNVQFSGVVFNYPTRPSIPVLQGLSLEV-----KKGQTLALVGSS-----GCGKSTVVQLLERFYDP---MAGSVFLDG 1094 (1284)
T ss_dssp SCCEEEEEEEBCCSCGGGCCSBSSCCEEE-----CSSSEEEEECSS-----STTHHHHHHHHTTSSCC---SEEEEESSS
T ss_pred CCcEEEEEEEEECCCCCCCeeecceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCcCC---CCCEEEECC
Confidence 3568899999998543 357999999999 788888888776 89999999999999999 599999999
Q ss_pred EecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-------CCcccCCccC
Q psy2519 94 KPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-------LMNSQHTRIG 162 (622)
Q Consensus 94 ~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-------L~~~~~~~v~ 162 (622)
+++.. .+|+++|||||++.+++ .||+||+.++..... .+.++ +.+.++..+ +.+..|+.+|
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~-~ti~eNi~~~~~~~~---~~~~~----i~~~~~~~~~~~~i~~l~~gldt~vg 1166 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFD-CSIAENIAYGDNSRV---VSYEE----IVRAAKEANIHQFIDSLPDKYNTRVG 1166 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCS-SBHHHHHTCCCSSCC---CCHHH----HHHHHHHHTCHHHHSSTTTGGGCBCS
T ss_pred EEcccCCHHHHHhceEEECCCCcccc-ccHHHHHhccCCCCC---CCHHH----HHHHHHHhCcHHHHHhCccccccccC
Confidence 99865 37889999999998775 699999987642211 12222 223333333 3445567776
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccc
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDK 242 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~ 242 (622)
+ ....||||||||++|||||+.+|++|+|||||+|||+.+...+.+.|++.. .|+|+|+++|++ +.+ +.|||
T Consensus 1167 e----~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~--~~~tvi~isH~l-~~i-~~~dr 1238 (1284)
T 3g5u_A 1167 D----KGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR--EGRTCIVIAHRL-STI-QNADL 1238 (1284)
T ss_dssp T----TSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS--SSSCEEEECSCT-TGG-GSCSE
T ss_pred C----CCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhC--CCCEEEEEecCH-HHH-HcCCE
Confidence 5 123599999999999999999999999999999999999999999999864 589999999997 455 56999
Q ss_pred eeeecCCceEEecChHHHHH
Q psy2519 243 IILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 243 v~~L~~G~iv~~G~~~~~~~ 262 (622)
|++|++|++++.|+++++.+
T Consensus 1239 i~vl~~G~i~~~g~~~~l~~ 1258 (1284)
T 3g5u_A 1239 IVVIQNGKVKEHGTHQQLLA 1258 (1284)
T ss_dssp EEEEETBEEEEEECHHHHHH
T ss_pred EEEEECCEEEEECCHHHHHh
Confidence 99999999999999998763
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-35 Score=332.05 Aligned_cols=205 Identities=21% Similarity=0.213 Sum_probs=175.6
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| |+. .++++++++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.+
T Consensus 357 ~l~~~~l~~~~--~~~-~l~~~~~~v-----~~Gei~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~I~~----- 415 (607)
T 3bk7_A 357 LVEYPRLVKDY--GSF-KLEVEPGEI-----RKGEVIGIVGPN-----GIGKTTFVKMLAGVEEP---TEGKVEW----- 415 (607)
T ss_dssp EEEECCEEEEC--SSC-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SBSCCCC-----
T ss_pred EEEEeceEEEe--cce-EEEeccccc-----CCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CceEEEE-----
Confidence 46778998886 554 588888888 578888888887 89999999999999999 4899976
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
++.+|||+|+..+.+.+||.|++....... ....++++++++.+||.+..++.+++ |||||
T Consensus 416 ----~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGe 476 (607)
T 3bk7_A 416 ----DLTVAYKPQYIKAEYEGTVYELLSKIDSSK-------LNSNFYKTELLKPLGIIDLYDRNVED--------LSGGE 476 (607)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HHCHHHHHHTHHHHTCTTTTTSBGGG--------CCHHH
T ss_pred ----eeEEEEEecCccCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCCchHhcCChhh--------CCHHH
Confidence 246999999988888899999887641110 11234678899999999888998777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|.|||++|||+ +++..+|||+++|++ |+++..
T Consensus 477 ~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~-~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 477 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEcCCcceEEec
Confidence 99999999999999999999999999999999999999999865799999999995 688899999999986 889999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 556 g~p~~~~~ 563 (607)
T 3bk7_A 556 LPPMGMRE 563 (607)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99988764
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-35 Score=327.86 Aligned_cols=205 Identities=20% Similarity=0.204 Sum_probs=174.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| ++. .++++++++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.+
T Consensus 287 ~l~~~~l~~~~--~~~-~l~~~~~~i-----~~Ge~~~i~G~N-----GsGKSTLlk~l~Gl~~p---~~G~i~~----- 345 (538)
T 1yqt_A 287 LVTYPRLVKDY--GSF-RLEVEPGEI-----KKGEVIGIVGPN-----GIGKTTFVKMLAGVEEP---TEGKIEW----- 345 (538)
T ss_dssp EEEECCEEEEE--TTE-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SBCCCCC-----
T ss_pred EEEEeeEEEEE--CCE-EEEeCcccc-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCeEEEE-----
Confidence 36778898875 554 588888888 577888888887 89999999999999998 4899975
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+..+|||+|+....+.+||.|++....... ....++++++++.+++.+..++.+++ |||||
T Consensus 346 ----~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~-------~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGe 406 (538)
T 1yqt_A 346 ----DLTVAYKPQYIKADYEGTVYELLSKIDASK-------LNSNFYKTELLKPLGIIDLYDREVNE--------LSGGE 406 (538)
T ss_dssp ----CCCEEEECSSCCCCCSSBHHHHHHHHHHHH-------HTCHHHHHHTTTTTTCGGGTTSBGGG--------CCHHH
T ss_pred ----CceEEEEecCCcCCCCCcHHHHHHhhhccC-------CCHHHHHHHHHHHcCChhhhcCChhh--------CCHHH
Confidence 246999999987778899999886541111 01124577899999998888888777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||+|+.+|++|||||||+|||+.++.++.+.|++++++.|.|||++|||+ +++..+|||+++|++ |+++..
T Consensus 407 ~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~-~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-LMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp HHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceEeec
Confidence 99999999999999999999999999999999999999999865699999999995 788899999999986 899999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 486 g~~~~~~~ 493 (538)
T 1yqt_A 486 LPPMGMRE 493 (538)
T ss_dssp CCCEEHHH
T ss_pred CCHHHHHh
Confidence 99988764
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-34 Score=322.37 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=172.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| |+. .+..+|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|
T Consensus 269 ~l~~~~l~~~~--~~~-~l~~~~~~i-----~~Gei~~i~G~n-----GsGKSTLl~~l~Gl~~p---~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKL--GDF-QLVVDNGEA-----KEGEIIGILGPN-----GIGKTTFARILVGEITA---DEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEE--TTE-EEEECCEEE-----ETTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SBCCEESSC---
T ss_pred eEEEcceEEEE--CCE-EEEeccceE-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CCcEEEECC---
Confidence 45678888875 553 467778888 578888888887 89999999999999999 589998765
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
+.++|++|+....+.+||.||+.+....... . ....++++++.++|.+..++.+++ |||||
T Consensus 330 -----~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~--------LSGGq 390 (538)
T 3ozx_A 330 -----QILSYKPQRIFPNYDGTVQQYLENASKDALS---T---SSWFFEEVTKRLNLHRLLESNVND--------LSGGE 390 (538)
T ss_dssp -----CCEEEECSSCCCCCSSBHHHHHHHHCSSTTC---T---TSHHHHHTTTTTTGGGCTTSBGGG--------CCHHH
T ss_pred -----eeeEeechhcccccCCCHHHHHHHhhhhccc---h---hHHHHHHHHHHcCCHHHhcCChhh--------CCHHH
Confidence 3589999987777789999999874221110 1 123567899999999989998777 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEe
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFI 254 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~ 254 (622)
||||+|||||+.+|++|||||||+|||+.++.++.++|++++++.|.|||+||||+ +++..+||||++|++ |.....
T Consensus 391 ~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl-~~~~~~aDri~vl~~~~~~~~~~ 469 (538)
T 3ozx_A 391 LQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDL-SIHDYIADRIIVFKGEPEKAGLA 469 (538)
T ss_dssp HHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCcceeccC
Confidence 99999999999999999999999999999999999999999876799999999996 788899999999986 667777
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
+++.++.
T Consensus 470 ~~~~~~~ 476 (538)
T 3ozx_A 470 TSPVTLK 476 (538)
T ss_dssp CCCEEHH
T ss_pred CChHHHH
Confidence 7766543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.3e-34 Score=321.02 Aligned_cols=208 Identities=19% Similarity=0.173 Sum_probs=170.2
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKF 100 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~ 100 (622)
++++++|+ +...++++++|++.-+...+|+.+.++|+| ||||||||++|+|+++| .+|+. + .
T Consensus 350 ~~~~~~y~-~~~~~l~~vsl~v~~G~~~~GEiv~iiG~N-----GsGKSTLlk~l~Gl~~p---~~G~~------~---~ 411 (608)
T 3j16_B 350 ASRAFSYP-SLKKTQGDFVLNVEEGEFSDSEILVMMGEN-----GTGKTTLIKLLAGALKP---DEGQD------I---P 411 (608)
T ss_dssp SSSCCEEC-CEEEECSSCEEEECCEECCTTCEEEEESCT-----TSSHHHHHHHHHTSSCC---SBCCC------C---C
T ss_pred cceeEEec-CcccccCceEEEEecCccccceEEEEECCC-----CCcHHHHHHHHhcCCCC---CCCcC------c---c
Confidence 56777763 334578899999844433444667888777 89999999999999999 47752 2 1
Q ss_pred cccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 101 RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 101 r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
+..++|++|+.......||+|++... .+.. ... .+.++++++.++|.+..++.+++ |||||||||
T Consensus 412 ~~~i~~~~q~~~~~~~~tv~e~~~~~--~~~~-~~~----~~~~~~~l~~l~l~~~~~~~~~~--------LSGGqkQRv 476 (608)
T 3j16_B 412 KLNVSMKPQKIAPKFPGTVRQLFFKK--IRGQ-FLN----PQFQTDVVKPLRIDDIIDQEVQH--------LSGGELQRV 476 (608)
T ss_dssp SCCEEEECSSCCCCCCSBHHHHHHHH--CSST-TTS----HHHHHHTHHHHTSTTTSSSBSSS--------CCHHHHHHH
T ss_pred CCcEEEecccccccCCccHHHHHHHH--hhcc-ccc----HHHHHHHHHHcCChhhhcCChhh--------CCHHHHHHH
Confidence 45699999987766678999987543 2211 111 23567899999999999999777 999999999
Q ss_pred HHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC--CceEEecChH
Q psy2519 181 SFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD--SRTAFIGSKD 258 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~--G~iv~~G~~~ 258 (622)
+|||+|+.+|++|||||||+|||+.++.++.++|++++++.|+|||++|||+ +++..+||||++|++ |+++..|+|+
T Consensus 477 ~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl-~~~~~~aDrvivl~~~~g~~~~~g~p~ 555 (608)
T 3j16_B 477 AIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDF-IMATYLADKVIVFEGIPSKNAHARAPE 555 (608)
T ss_dssp HHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCH-HHHHHHCSEEEECEEETTTEEECCCCE
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCH-HHHHHhCCEEEEEeCCCCeEEecCChH
Confidence 9999999999999999999999999999999999999765799999999996 788899999999986 9999999999
Q ss_pred HHHH
Q psy2519 259 AALA 262 (622)
Q Consensus 259 ~~~~ 262 (622)
+++.
T Consensus 556 ~~~~ 559 (608)
T 3j16_B 556 SLLT 559 (608)
T ss_dssp EHHH
T ss_pred HHhh
Confidence 8764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=322.07 Aligned_cols=220 Identities=19% Similarity=0.229 Sum_probs=144.8
Q ss_pred cCCcccccccc-ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH---------------------HHHhC
Q psy2519 20 VPNVDFSEIVG-SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI---------------------RLFLS 77 (622)
Q Consensus 20 ~~~~~~~~~~g-~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl---------------------~~l~g 77 (622)
=+|+++.|..| ..++|+++|+++ .+|+.+.++|+| |||||||+ ++++|
T Consensus 18 ~~~~~~~~~~~~~~~~L~~vsl~i-----~~Ge~~~liGpN-----GaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~ 87 (670)
T 3ux8_A 18 GSHMDKIIVKGARAHNLKNIDVEI-----PRGKLVVLTGLS-----GSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQ 87 (670)
T ss_dssp ----CEEEEEEECSTTCCSEEEEE-----ETTSEEEEECST-----TSSHHHHHTTTHHHHHHHHHHTC-----------
T ss_pred CCCcceEEEcCCCccceeccEEEE-----CCCCEEEEECCC-----CCCHHHHhcccccccccccccccchhhhhhhhcc
Confidence 35566655444 456899999999 677888888887 89999998 88888
Q ss_pred CCCCCCc----eeeEEEECCEecCccccccEEEEecCCC-------------------CCCCCCHHHHHHHHHHcCCCcc
Q psy2519 78 QVIDDCI----IDGDIRVNGKPVEGKFRSACGFMYQHDL-------------------FSPSLTVYEHLYFMALLKLDRR 134 (622)
Q Consensus 78 ~~~~~~~----~~G~I~~~G~~~~~~~r~~igyV~Q~~~-------------------l~~~lTV~E~l~f~~~l~~~~~ 134 (622)
+..|+.. ..|.|.++|.+.....++.+|+|+|... .++.+||+||+.+.........
T Consensus 88 l~~~~~~~i~~~~~~i~~~~~~~~~~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~ 167 (670)
T 3ux8_A 88 MEKPDVDAIEGLSPAISIDQKTTSRNPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEK 167 (670)
T ss_dssp ---CCCSEEESCCCEEEESSCC-----CCBHHHHTTCC-------------------------CC---------------
T ss_pred cccCCccceeccccceEecCchhhccchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchh
Confidence 8887411 1567788887665434455666655432 3467899999988543321110
Q ss_pred ccH------HHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHH
Q psy2519 135 VKA------YQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSF 205 (622)
Q Consensus 135 ~~~------~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgLD~~ 205 (622)
... ++..++ .++++.+||.+. .++++++ |||||||||+|||||+.+|+ +|||||||+|||+.
T Consensus 168 ~~~~~~~~~~~~~~~-~~~l~~~gL~~~~~~~~~~~--------LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 168 EAQIARLILREIRDR-LGFLQNVGLDYLTLSRSAGT--------LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp -----------CHHH-HHHHHHTTCTTCCTTCBGGG--------SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred hhHHHHHHHHHHHHH-HHHHHHcCCchhhhcCCccc--------CCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHH
Confidence 000 001111 246889999765 6888777 99999999999999999998 99999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 206 ~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++.++.++|+++++ +|.|||+||||+ +.+ ..||++++| ++|++++.|+++++.
T Consensus 239 ~~~~l~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-LGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-HHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-cCCEEEEEeCCH-HHH-hhCCEEEEecccccccCCEEEEecCHHHHh
Confidence 99999999999987 699999999996 454 569999999 899999999999875
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.2e-33 Score=317.04 Aligned_cols=192 Identities=22% Similarity=0.203 Sum_probs=158.1
Q ss_pred CCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE---------E
Q psy2519 21 PNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI---------R 90 (622)
Q Consensus 21 ~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I---------~ 90 (622)
+||+++| |+. .+++++| ++ .+|+.+.++|+| |||||||||+|+|+++|+ +|++ .
T Consensus 95 ~~ls~~y--g~~~~~l~~vs-~i-----~~Ge~~~LiG~N-----GsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~ 158 (607)
T 3bk7_A 95 EDCVHRY--GVNAFVLYRLP-IV-----KDGMVVGIVGPN-----GTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRA 158 (607)
T ss_dssp GSEEEEC--STTCCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHH
T ss_pred CCeEEEE--CCCCeeeCCCC-CC-----CCCCEEEEECCC-----CChHHHHHHHHhCCCCCC---CCccccccchhhhe
Confidence 8899987 554 4888888 77 578888888887 899999999999999984 7885 4
Q ss_pred ECCEecCc------cccccEEEEecCCCCCC---CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 91 VNGKPVEG------KFRSACGFMYQHDLFSP---SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 91 ~~G~~~~~------~~r~~igyV~Q~~~l~~---~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
++|.++.. ..+..+++++|...+.+ ..||.|++... . ..++++++++.+||.+..++.+
T Consensus 159 ~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~----~--------~~~~~~~~L~~lgL~~~~~~~~ 226 (607)
T 3bk7_A 159 FRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKV----D--------EVGKFEEVVKELELENVLDREL 226 (607)
T ss_dssp TTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHT----C--------CSSCHHHHHHHTTCTTGGGSBG
T ss_pred eCCEehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhh----H--------HHHHHHHHHHHcCCCchhCCCh
Confidence 56766532 12346889998643322 23999998531 1 0134678999999999999987
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++.++|+++++ .|.|||++|||+ +.+..+||
T Consensus 227 ~~--------LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~~~~ad 296 (607)
T 3bk7_A 227 HQ--------LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVLDYLSD 296 (607)
T ss_dssp GG--------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHHHHHCS
T ss_pred hh--------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEecCh-HHHHhhCC
Confidence 77 999999999999999999999999999999999999999999999987 699999999995 68888999
Q ss_pred ceeeecCCc
Q psy2519 242 KIILLADSR 250 (622)
Q Consensus 242 ~v~~L~~G~ 250 (622)
||++|+++.
T Consensus 297 ri~vl~~~~ 305 (607)
T 3bk7_A 297 VIHVVYGEP 305 (607)
T ss_dssp EEEEEESCT
T ss_pred EEEEECCCc
Confidence 999998654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.2e-33 Score=312.45 Aligned_cols=196 Identities=22% Similarity=0.194 Sum_probs=158.6
Q ss_pred Cccc-CCccccccccce-eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----
Q psy2519 17 NEEV-PNVDFSEIVGSV-QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI----- 89 (622)
Q Consensus 17 ~~~~-~~~~~~~~~g~~-~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I----- 89 (622)
..++ +||+|+| |+. .+++++| ++ .+|+.+.++|+| |||||||||+|+|+++|+ +|++
T Consensus 20 ~~~~~~~ls~~y--g~~~~~l~~vs-~i-----~~Ge~~~LvG~N-----GaGKSTLlk~l~Gl~~p~---~G~~~~~~~ 83 (538)
T 1yqt_A 20 MEQLEEDCVHRY--GVNAFVLYRLP-VV-----KEGMVVGIVGPN-----GTGKSTAVKILAGQLIPN---LCGDNDSWD 83 (538)
T ss_dssp ----CCCEEEEC--STTCCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHHTSSCCC---TTTTCCSHH
T ss_pred ChhHhcCcEEEE--CCccccccCcC-cC-----CCCCEEEEECCC-----CCCHHHHHHHHhCCCCCC---CCccCcchh
Confidence 3566 6999997 554 5888888 77 678888888887 899999999999999984 7875
Q ss_pred ----EECCEecCc------cccccEEEEecCCCCCCC---CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc
Q psy2519 90 ----RVNGKPVEG------KFRSACGFMYQHDLFSPS---LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS 156 (622)
Q Consensus 90 ----~~~G~~~~~------~~r~~igyV~Q~~~l~~~---lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~ 156 (622)
.++|.++.. ..+..+++++|+..+.+. .||.|++... . ..++++++++.+||.+.
T Consensus 84 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~---~---------~~~~~~~~l~~lgl~~~ 151 (538)
T 1yqt_A 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKA---D---------ETGKLEEVVKALELENV 151 (538)
T ss_dssp HHHHHTTTSTHHHHHHHHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHH---C---------SSSCHHHHHHHTTCTTT
T ss_pred hhHHhhCCccHHHHHHHHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhh---h---------HHHHHHHHHHHcCCChh
Confidence 457765532 123468999997544332 3899987531 0 11346789999999988
Q ss_pred cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 157 QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 157 ~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.++++++ |||||||||+||+||+.+|++|||||||++||+.++.++.++|+++++ .|.|||++|||+ +++
T Consensus 152 ~~~~~~~--------LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd~-~~~ 221 (538)
T 1yqt_A 152 LEREIQH--------LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDL-AVL 221 (538)
T ss_dssp TTSBGGG--------CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH
T ss_pred hhCChhh--------CCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH
Confidence 8988777 999999999999999999999999999999999999999999999987 699999999995 688
Q ss_pred HhhccceeeecCCc
Q psy2519 237 IDMFDKIILLADSR 250 (622)
Q Consensus 237 ~~~~D~v~~L~~G~ 250 (622)
.++||||++|++|.
T Consensus 222 ~~~~dri~vl~~~~ 235 (538)
T 1yqt_A 222 DYLSDIIHVVYGEP 235 (538)
T ss_dssp HHHCSEEEEEEEET
T ss_pred HHhCCEEEEEcCcc
Confidence 89999999998654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7e-32 Score=315.06 Aligned_cols=197 Identities=20% Similarity=0.239 Sum_probs=162.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+...|++++| |+..+|+++|+++ .+|+.+.++|+| |||||||||+|+| |+| +|.+..
T Consensus 436 L~~~~ls~~y--g~~~iL~~vsl~I-----~~Ge~v~LiGpN-----GsGKSTLLk~Lag---------G~i--~g~~~~ 492 (986)
T 2iw3_A 436 LCNCEFSLAY--GAKILLNKTQLRL-----KRARRYGICGPN-----GCGKSTLMRAIAN---------GQV--DGFPTQ 492 (986)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHH---------TCS--TTCCCT
T ss_pred eEEeeEEEEE--CCEEeEecceEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhC---------CCc--CCCccc
Confidence 3344666664 7888999999999 677788888887 8999999999995 222 444432
Q ss_pred ccccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCCcCCCCccccChH
Q psy2519 98 GKFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~~~~~~~~gLSgG 175 (622)
.. .+++|++|+. .+++.+||.|++.+ ... .. +++++++++.+||. +..++++++ ||||
T Consensus 493 ~~--~~~~~v~q~~~~~~~~ltv~e~l~~--~~~---~~-----~~~v~~~L~~lgL~~~~~~~~~~~--------LSGG 552 (986)
T 2iw3_A 493 EE--CRTVYVEHDIDGTHSDTSVLDFVFE--SGV---GT-----KEAIKDKLIEFGFTDEMIAMPISA--------LSGG 552 (986)
T ss_dssp TT--SCEEETTCCCCCCCTTSBHHHHHHT--TCS---SC-----HHHHHHHHHHTTCCHHHHHSBGGG--------CCHH
T ss_pred cc--eeEEEEcccccccccCCcHHHHHHH--hhc---CH-----HHHHHHHHHHcCCChhhhcCCccc--------CCHH
Confidence 22 2478999974 78899999999976 211 11 45678999999995 677888777 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE-Ee
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA-FI 254 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv-~~ 254 (622)
|||||+|||+|+.+|++|||||||+|||+.++..+.+.|++ .|.|||++|||+ .++.++||++++|++|+++ +.
T Consensus 553 qkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHdl-~~l~~~adrii~L~~G~iv~~~ 627 (986)
T 2iw3_A 553 WKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHDS-VFLDNVCEYIINYEGLKLRKYK 627 (986)
T ss_dssp HHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----CCCEEEEEECCH-HHHHHhCCEEEEEECCeeecCC
Confidence 99999999999999999999999999999999999999987 489999999995 7888999999999999997 68
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++++..
T Consensus 628 G~~~e~~~ 635 (986)
T 2iw3_A 628 GNFTEFVK 635 (986)
T ss_dssp SCHHHHHH
T ss_pred CCHHHHHh
Confidence 99987754
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-32 Score=315.29 Aligned_cols=207 Identities=21% Similarity=0.263 Sum_probs=161.2
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+|..++.++|+++|+++ .+|+.+.++|+| |||||||||+|+|+++| .+|+|.++|.
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I-----~~GeivaIiGpN-----GSGKSTLLklLaGll~P---~sG~I~~~~~-- 735 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQC-----SLSSRIAVIGPN-----GAGKSTLINVLTGELLP---TSGEVYTHEN-- 735 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEE-----ETTCEEEECSCC-----CHHHHHHHHHHTTSSCC---SEEEEEECTT--
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCCC---CceEEEEcCc--
Confidence 47899999997422367899999999 577788888777 89999999999999999 5999999863
Q ss_pred CccccccEEEEecCCCC----CCCCCHHHHHHHHHHcCC------------C----------------------------
Q psy2519 97 EGKFRSACGFMYQHDLF----SPSLTVYEHLYFMALLKL------------D---------------------------- 132 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l----~~~lTV~E~l~f~~~l~~------------~---------------------------- 132 (622)
..+||++|+... ....|+.|++.+...... .
T Consensus 736 -----~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~ 810 (986)
T 2iw3_A 736 -----CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRK 810 (986)
T ss_dssp -----CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEE
T ss_pred -----cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhh
Confidence 258999997521 234688888765321000 0
Q ss_pred ------------------------cc--------ccH--------------------------HHHHHHHHHHHHHhCCC
Q psy2519 133 ------------------------RR--------VKA--------------------------YQRIALINSLLIELGLM 154 (622)
Q Consensus 133 ------------------------~~--------~~~--------------------------~~~~~~v~~~l~~lgL~ 154 (622)
.. ... ....++++++++.+||.
T Consensus 811 ~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~ 890 (986)
T 2iw3_A 811 FKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLD 890 (986)
T ss_dssp ETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCC
T ss_pred hcccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCC
Confidence 00 000 00135678999999997
Q ss_pred cc--cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 155 NS--QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 155 ~~--~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+. .++++++ |||||||||+|||+|+.+|++|||||||+|||+.+...+.+.|+++ |.|||++|||+
T Consensus 891 ~~~~~~~~~~~--------LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~----g~tVIiISHD~ 958 (986)
T 2iw3_A 891 PEIVSHSRIRG--------LSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF----EGGVIIITHSA 958 (986)
T ss_dssp HHHHHHSCGGG--------CCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC----SSEEEEECSCH
T ss_pred chhhcCCCccc--------cCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh----CCEEEEEECCH
Confidence 53 5777666 9999999999999999999999999999999999999999888654 56999999995
Q ss_pred cHHHHhhccceeeecCCceEEecC
Q psy2519 233 SSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 233 ~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
+.+.++||++++|++|+++..|+
T Consensus 959 -e~v~~l~DrVivL~~G~Iv~~G~ 981 (986)
T 2iw3_A 959 -EFTKNLTEEVWAVKDGRMTPSGH 981 (986)
T ss_dssp -HHHTTTCCEEECCBTTBCCC---
T ss_pred -HHHHHhCCEEEEEECCEEEEeCC
Confidence 67888999999999999998774
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.6e-31 Score=300.63 Aligned_cols=197 Identities=24% Similarity=0.281 Sum_probs=149.6
Q ss_pred ceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh----------------------CCCCCCCceeeE
Q psy2519 31 SVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL----------------------SQVIDDCIIDGD 88 (622)
Q Consensus 31 ~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~----------------------g~~~~~~~~~G~ 88 (622)
+.++|+++|+++ .+|+.++++|+| |||||||+++|. |+..+ +|.
T Consensus 334 ~~~~L~~vsl~I-----~~Ge~vaIiGpn-----GsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~----~~~ 399 (670)
T 3ux8_A 334 REHNLKNVSVKI-----PLGTFVAVTGVS-----GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL----DKV 399 (670)
T ss_dssp CSTTCCSEEEEE-----ETTSEEEEECST-----TSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC----SEE
T ss_pred cccccccceeEe-----cCCCEEEEEeeC-----CCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc----Cce
Confidence 346799999999 677788888776 899999998754 33322 578
Q ss_pred EEECCEecCccc---------------------------------------------cccEEEEecCCCCCC--------
Q psy2519 89 IRVNGKPVEGKF---------------------------------------------RSACGFMYQHDLFSP-------- 115 (622)
Q Consensus 89 I~~~G~~~~~~~---------------------------------------------r~~igyV~Q~~~l~~-------- 115 (622)
|.++|.++.... .+..|+++|+..++|
T Consensus 400 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~ 479 (670)
T 3ux8_A 400 IDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEV 479 (670)
T ss_dssp EECCSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTT
T ss_pred eEeccccCCCCCCcchhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeeccccccccccccc
Confidence 888888763200 012344555433333
Q ss_pred ------------------------CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCcc
Q psy2519 116 ------------------------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKV 170 (622)
Q Consensus 116 ------------------------~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~ 170 (622)
.+||+||+.+.... . ..+++.+.++.++|.+ ..++++++
T Consensus 480 ~~~~~~~~~~~~~~~~~~~~~~~~~ltv~e~l~~~~~~------~---~~~~~~~~l~~~~l~~~~~~~~~~~------- 543 (670)
T 3ux8_A 480 CHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI------P---KIKRKLETLYDVGLGYMKLGQPATT------- 543 (670)
T ss_dssp TTTCCBCHHHHTCCBTTBCHHHHHTSBHHHHHHHTTTC------H---HHHHHHHHHHHTTCTTSBTTCCGGG-------
T ss_pred ccCcccChhhhheeecCCCHHHHhhCCHHHHHHHHHHh------h---hHHHHHHHHHHcCCchhhccCCchh-------
Confidence 57999999885321 1 1234567888999964 45777666
Q ss_pred ccChHHHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee-
Q psy2519 171 VLSGGERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL- 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L- 246 (622)
|||||||||+|||||+.+| ++|||||||+|||+.++.+++++|+++++ +|+|||+||||+ +.+ +.||||++|
T Consensus 544 -LSgG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~-~g~tvi~vtHd~-~~~-~~~d~i~~l~ 619 (670)
T 3ux8_A 544 -LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLG 619 (670)
T ss_dssp -CCHHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEE
T ss_pred -CCHHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEeCCH-HHH-HhCCEEEEec
Confidence 9999999999999999987 59999999999999999999999999987 699999999996 454 679999999
Q ss_pred -----cCCceEEecChHHHH
Q psy2519 247 -----ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 -----~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 620 ~~~g~~~G~i~~~g~~~~~~ 639 (670)
T 3ux8_A 620 PEGGDRGGQIVAVGTPEEVA 639 (670)
T ss_dssp SSSGGGCCEEEEEECHHHHH
T ss_pred CCcCCCCCEEEEecCHHHHH
Confidence 899999999999874
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-30 Score=288.75 Aligned_cols=199 Identities=17% Similarity=0.169 Sum_probs=147.5
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI----------- 89 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I----------- 89 (622)
+|++++|..+ ...+++++ .+ .+|+.+.++|+| |||||||||+|+|+++|+ +|+|
T Consensus 81 ~~~~~~Y~~~-~~~l~~l~-~~-----~~Gei~~LvGpN-----GaGKSTLLkiL~Gll~P~---~G~i~~~~~~~~~~~ 145 (608)
T 3j16_B 81 AHVTHRYSAN-SFKLHRLP-TP-----RPGQVLGLVGTN-----GIGKSTALKILAGKQKPN---LGRFDDPPEWQEIIK 145 (608)
T ss_dssp TTEEEECSTT-SCEEECCC-CC-----CTTSEEEEECCT-----TSSHHHHHHHHHTSSCCC---TTTTCCSSCHHHHHH
T ss_pred CCeEEEECCC-ceeecCCC-CC-----CCCCEEEEECCC-----CChHHHHHHHHhcCCCCC---CceEecccchhhhhh
Confidence 4677776322 23455544 23 577888888887 899999999999999994 7887
Q ss_pred EECCEecCc----cccccE--EEEecCCCC------CCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCccc
Q psy2519 90 RVNGKPVEG----KFRSAC--GFMYQHDLF------SPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQ 157 (622)
Q Consensus 90 ~~~G~~~~~----~~r~~i--gyV~Q~~~l------~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~ 157 (622)
.+.|.++.. ...+.+ .+.+|.... -+..++.+++.... . +..++++++++.+||.+..
T Consensus 146 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~--~--------~~~~~~~~~l~~~gl~~~~ 215 (608)
T 3j16_B 146 YFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM--E--------KSPEDVKRYIKILQLENVL 215 (608)
T ss_dssp HTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC--C--------SCHHHHHHHHHHHTCTGGG
T ss_pred eecChhhhhhhhHHHHHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh--h--------hHHHHHHHHHHHcCCcchh
Confidence 334443321 011122 233332111 12235555544321 0 1124678999999999999
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++.+++ |||||||||+||+||+.+|++|||||||+|||+.++.++.++|+++++ .|+|||++||++ +++.
T Consensus 216 ~~~~~~--------LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~-~g~tvi~vtHdl-~~~~ 285 (608)
T 3j16_B 216 KRDIEK--------LSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLA-PTKYVICVEHDL-SVLD 285 (608)
T ss_dssp GSCTTT--------CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGT-TTCEEEEECSCH-HHHH
T ss_pred CCChHH--------CCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHH
Confidence 999877 999999999999999999999999999999999999999999999987 699999999995 7899
Q ss_pred hhccceeeecCCceEEe
Q psy2519 238 DMFDKIILLADSRTAFI 254 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~ 254 (622)
.++|||++|++|..++.
T Consensus 286 ~~~drv~vl~~~~~~~~ 302 (608)
T 3j16_B 286 YLSDFVCIIYGVPSVYG 302 (608)
T ss_dssp HHCSEEEEEESCTTTEE
T ss_pred HhCCEEEEEeCCccccc
Confidence 99999999998776553
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.7e-30 Score=284.55 Aligned_cols=174 Identities=23% Similarity=0.256 Sum_probs=138.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-----------EECCEecCc------cccccEEEEecC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-----------RVNGKPVEG------KFRSACGFMYQH 110 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-----------~~~G~~~~~------~~r~~igyV~Q~ 110 (622)
++|+.+.++|+| |||||||||+|+|+++|+ +|+| .++|+++.. .....+..+.|.
T Consensus 23 ~~Gei~gLiGpN-----GaGKSTLlkiL~Gl~~p~---~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~ 94 (538)
T 3ozx_A 23 KNNTILGVLGKN-----GVGKTTVLKILAGEIIPN---FGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQY 94 (538)
T ss_dssp CTTEEEEEECCT-----TSSHHHHHHHHTTSSCCC---TTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSC
T ss_pred CCCCEEEEECCC-----CCcHHHHHHHHhcCCCCC---CCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccch
Confidence 466777788777 899999999999999994 7988 677776532 011233444443
Q ss_pred ----CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 111 ----DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 111 ----~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+.++ ..||+|++... . .+++++++++.+|+.+..++.+++ |||||||||+||+||
T Consensus 95 ~~~~~~~~-~~~v~~~l~~~---~---------~~~~~~~~l~~l~l~~~~~~~~~~--------LSgGe~Qrv~iA~aL 153 (538)
T 3ozx_A 95 VEYASKFL-KGTVNEILTKI---D---------ERGKKDEVKELLNMTNLWNKDANI--------LSGGGLQRLLVAASL 153 (538)
T ss_dssp TTGGGTTC-CSBHHHHHHHH---C---------CSSCHHHHHHHTTCGGGTTSBGGG--------CCHHHHHHHHHHHHH
T ss_pred hhhhhhhc-cCcHHHHhhcc---h---------hHHHHHHHHHHcCCchhhcCChhh--------CCHHHHHHHHHHHHH
Confidence 2233 34788765321 0 122466899999999999999877 999999999999999
Q ss_pred hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 187 ~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
+.+|++|||||||++||+.++.++.++|+++++ |+|||++||++ +++..+||+|++|++|..++
T Consensus 154 ~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~--g~tii~vsHdl-~~~~~~~d~i~vl~~~~~~~ 217 (538)
T 3ozx_A 154 LREADVYIFDQPSSYLDVRERMNMAKAIRELLK--NKYVIVVDHDL-IVLDYLTDLIHIIYGESSVY 217 (538)
T ss_dssp HSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCT--TSEEEEECSCH-HHHHHHCSEEEEEEEETTTE
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHhC--CCEEEEEEeCh-HHHHhhCCEEEEecCCcccc
Confidence 999999999999999999999999999999963 89999999996 78999999999998765443
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.5e-28 Score=284.83 Aligned_cols=198 Identities=24% Similarity=0.298 Sum_probs=152.1
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh-CCC---------CCCC--ceee------EEEECCEe
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQV---------IDDC--IIDG------DIRVNGKP 95 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~-g~~---------~~~~--~~~G------~I~~~G~~ 95 (622)
+|+++|+++ ..|+.++++|+| |||||||++.|. |.+ .++. ...| .|.++|.+
T Consensus 639 ~Lk~Vsl~I-----~~Geiv~I~G~n-----GSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I~idq~p 708 (972)
T 2r6f_A 639 NLKNVSVKI-----PLGTFVAVTGVS-----GSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVIDIDQSP 708 (972)
T ss_dssp SCCSEEEEE-----ESSSEEECCBCT-----TSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEEEECSSC
T ss_pred ccccceEEE-----cCCCEEEEEcCC-----CCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEEEEcCcc
Confidence 589999999 566677777666 899999999853 211 2221 1234 58899988
Q ss_pred cCccc-----------------------cccEEEEecCCCCC----------------------C---------------
Q psy2519 96 VEGKF-----------------------RSACGFMYQHDLFS----------------------P--------------- 115 (622)
Q Consensus 96 ~~~~~-----------------------r~~igyV~Q~~~l~----------------------~--------------- 115 (622)
+.... .+.+||++|...+. +
T Consensus 709 ig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c~G~r~~ 788 (972)
T 2r6f_A 709 IGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYN 788 (972)
T ss_dssp SCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTTTTCCBC
T ss_pred cccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccccccccc
Confidence 73210 13457777753321 1
Q ss_pred -----------------CCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHH
Q psy2519 116 -----------------SLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 116 -----------------~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqr 177 (622)
.+||.|++.|.... .. .+++.++++.+||.. ..++.+.+ ||||||
T Consensus 789 ~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~------~~---~~~~~~~L~~~gL~~~~l~~~~~~--------LSGGek 851 (972)
T 2r6f_A 789 RETLEVTYKGKNIAEVLDMTVEDALDFFASI------PK---IKRKLETLYDVGLGYMKLGQPATT--------LSGGEA 851 (972)
T ss_dssp TTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC------HH---HHHHHHHHHHTTCSSSBTTCCGGG--------CCHHHH
T ss_pred chhhhhhccCCCHHHhhhcCHHHHHHHHhcc------hh---HHHHHHHHHHcCCCcccccCchhh--------CCHHHH
Confidence 46888888764311 11 234568999999987 67788776 999999
Q ss_pred HHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cC
Q psy2519 178 KRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------AD 248 (622)
Q Consensus 178 qRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~ 248 (622)
|||+||++|+.+| ++|||||||+|||+.++.++++.|+++++ .|.|||++|||+ +++ +.||+|++| ++
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~-~G~TVIvisHdl-~~i-~~aDrIivL~p~gG~~~ 928 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVD-NGDTVLVIEHNL-DVI-KTADYIIDLGPEGGDRG 928 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSTTSC
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEcCCH-HHH-HhCCEEEEEcCCCCCCC
Confidence 9999999999865 99999999999999999999999999987 699999999996 455 689999999 78
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++++.
T Consensus 929 G~Iv~~g~~~el~ 941 (972)
T 2r6f_A 929 GQIVAVGTPEEVA 941 (972)
T ss_dssp CSEEEEESHHHHH
T ss_pred CEEEEecCHHHHH
Confidence 9999999999775
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-28 Score=283.22 Aligned_cols=200 Identities=24% Similarity=0.295 Sum_probs=152.5
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHH---------HHHhCCCCCCC---cee------eEEEECC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELI---------RLFLSQVIDDC---IID------GDIRVNG 93 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl---------~~l~g~~~~~~---~~~------G~I~~~G 93 (622)
.+.|+++|+++ ..|+.++++|+| |||||||+ +.+.+...+.. ..+ +.+.+++
T Consensus 597 ~~~Lk~Vsl~I-----~~Geiv~I~G~S-----GSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq 666 (916)
T 3pih_A 597 HNNLKNIDVEI-----PLGVFVCVTGVS-----GSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQ 666 (916)
T ss_dssp STTCCSEEEEE-----ESSSEEEEECST-----TSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECS
T ss_pred cccccccceEE-----cCCcEEEEEccC-----CCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecc
Confidence 45689999999 567777777776 89999997 45555433210 022 3466666
Q ss_pred EecCcc---------------------------------------------ccccEEEEecCCCCCCC------------
Q psy2519 94 KPVEGK---------------------------------------------FRSACGFMYQHDLFSPS------------ 116 (622)
Q Consensus 94 ~~~~~~---------------------------------------------~r~~igyV~Q~~~l~~~------------ 116 (622)
.++... ..+..|++.|+..++|.
T Consensus 667 ~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r 746 (916)
T 3pih_A 667 SPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKR 746 (916)
T ss_dssp CCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSC
T ss_pred ccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccc
Confidence 554210 01345888887766653
Q ss_pred --------------------CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChH
Q psy2519 117 --------------------LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 117 --------------------lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgG 175 (622)
+||.|++.|.... + ..+++.++|+.+||... .++.+.+ ||||
T Consensus 747 ~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~~------~---~~~~~~~~L~~vGL~~~~lgq~~~~--------LSGG 809 (916)
T 3pih_A 747 YNRETLEITYKGKNISDILDMTVDEALEFFKNI------P---SIKRTLQVLHDVGLGYVKLGQPATT--------LSGG 809 (916)
T ss_dssp BCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTTC------H---HHHHHHHHHHHTTGGGSBTTCCSTT--------CCHH
T ss_pred cchhhhhhhhccCCHHHHhhCCHHHHHHHHhcc------h---hHHHHHHHHHHcCCchhhccCCccC--------CCHH
Confidence 7888888875321 1 23456789999999653 4566555 9999
Q ss_pred HHHHHHHHHHHhhCC---CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------
Q psy2519 176 ERKRLSFATELLTDP---ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ 246 (622)
Q Consensus 176 qrqRvsIA~aL~~~P---~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------ 246 (622)
|||||+|||||+.+| ++|||||||+|||+.+..++++.|+++++ .|.|||+|+||+ +.+ +.||+|++|
T Consensus 810 ErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~-~G~TVIvI~HdL-~~i-~~ADrIivLgp~gg~ 886 (916)
T 3pih_A 810 EAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVD-RGNTVIVIEHNL-DVI-KNADHIIDLGPEGGK 886 (916)
T ss_dssp HHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECCCH-HHH-TTCSEEEEEESSSGG
T ss_pred HHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHH-HhCCEEEEecCCCCC
Confidence 999999999999875 79999999999999999999999999987 699999999996 455 569999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|++++.|+++++.
T Consensus 887 ~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 887 EGGYIVATGTPEEIA 901 (916)
T ss_dssp GCCEEEEEESHHHHH
T ss_pred CCCEEEEEcCHHHHH
Confidence 899999999999886
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3e-28 Score=282.10 Aligned_cols=109 Identities=28% Similarity=0.330 Sum_probs=98.9
Q ss_pred HHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHHHhhC---CCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 142 ALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATELLTD---PALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 142 ~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~---P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
+++.++++.+||.. ..++.+.+ |||||||||+||++|+.+ |++|||||||+|||+.+..++.++|+++
T Consensus 708 ~~~~~~L~~~gL~~~~l~~~~~~--------LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L 779 (842)
T 2vf7_A 708 FRALDTLREVGLGYLRLGQPATE--------LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKL 779 (842)
T ss_dssp HHHHHHHHHTTCTTSBTTCCGGG--------CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccccCCccc--------CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 46789999999987 35777666 999999999999999996 7999999999999999999999999999
Q ss_pred HhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 218 TSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 218 ~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
++ .|.|||++|||+ +++ +.||+|++| ++|++++.|+++++.
T Consensus 780 ~~-~G~tVIvisHdl-~~i-~~aDrii~L~p~~g~~~G~Iv~~g~~~el~ 826 (842)
T 2vf7_A 780 VD-AGNTVIAVEHKM-QVV-AASDWVLDIGPGAGEDGGRLVAQGTPAEVA 826 (842)
T ss_dssp HH-TTCEEEEECCCH-HHH-TTCSEEEEECSSSGGGCCSEEEEECHHHHT
T ss_pred Hh-CCCEEEEEcCCH-HHH-HhCCEEEEECCCCCCCCCEEEEEcCHHHHH
Confidence 87 699999999996 566 789999999 799999999999764
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-31 Score=286.87 Aligned_cols=198 Identities=12% Similarity=0.061 Sum_probs=155.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-E-EEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-D-IRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~-I~~~ 92 (622)
..+++++||+|.| + ++++++ ++|+.+.++|+| |||||||+|+|+|+..| .+| + |.++
T Consensus 116 ~~mi~~~nl~~~y--~------~vsl~i-----~~Ge~v~IvGpn-----GsGKSTLlr~L~Gl~~p---~~G~~pI~vd 174 (460)
T 2npi_A 116 HTMKYIYNLHFML--E------KIRMSN-----FEGPRVVIVGGS-----QTGKTSLSRTLCSYALK---FNAYQPLYIN 174 (460)
T ss_dssp CTHHHHHHHHHHH--H------HHHHHS-----SSCCCEEEEEST-----TSSHHHHHHHHHHTTHH---HHCCCCEEEE
T ss_pred cchhhhhhhhehh--h------cCceEe-----CCCCEEEEECCC-----CCCHHHHHHHHhCcccc---cCCceeEEEc
Confidence 3467889999986 3 577777 578888888887 79999999999999988 589 8 9999
Q ss_pred CEecCccccccEEEEecCCC---CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 93 GKPVEGKFRSACGFMYQHDL---FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~---l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
|. .++.++||||+.. +.+.+||+||+ |+....... . ..+++.++++.+|+.+..+ ..+
T Consensus 175 g~-----~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~--~---~~~~~~~ll~~~gl~~~~~--~~~------ 235 (460)
T 2npi_A 175 LD-----PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGA--T---LLHNKQPMVKNFGLERINE--NKD------ 235 (460)
T ss_dssp CC-----TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSC--C---SSCCBCCEECCCCSSSGGG--CHH------
T ss_pred CC-----ccCCeeeeccchhhcccccccchhhhh-cccccccCc--c---hHHHHHHHHHHhCCCcccc--hhh------
Confidence 83 3678999999874 45668999998 654321110 0 1123456778888877655 444
Q ss_pred cccChHHHHHHHHHHH--HhhCCCe----EEEeC-CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH-----HHH
Q psy2519 170 VVLSGGERKRLSFATE--LLTDPAL----LLCDE-PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS-----ELI 237 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~a--L~~~P~l----LlLDE-PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~-----~i~ 237 (622)
|||||||||+|||+ |+.+|++ ||||| ||++||+. ...+.+++ ++.|+|+|+++|+..+ ++.
T Consensus 236 --LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~----~~~~~tviiVth~~~~~l~~~~~~ 308 (460)
T 2npi_A 236 --LYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHII----EKLNVNIMLVLCSETDPLWEKVKK 308 (460)
T ss_dssp --HHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHH----HHTTCCEEEEECCSSCTHHHHHHH
T ss_pred --hhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHH----HHhCCCEEEEEccCchhhhHHHHH
Confidence 99999999999999 9999999 99999 99999999 44444443 3357899999999631 666
Q ss_pred hhccc-----eeeec-CCceEEecChHHH
Q psy2519 238 DMFDK-----IILLA-DSRTAFIGSKDAA 260 (622)
Q Consensus 238 ~~~D~-----v~~L~-~G~iv~~G~~~~~ 260 (622)
+++|| |++|+ +|+++ .|+++++
T Consensus 309 ~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 309 TFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 89999 99999 99999 9998765
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=244.09 Aligned_cols=208 Identities=15% Similarity=0.143 Sum_probs=144.9
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCC-----------------------------
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDD----------------------------- 82 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~----------------------------- 82 (622)
..+++++++++ .+| ..+++|+| ||||||||++|.++..+.
T Consensus 48 f~~l~~v~l~~-----~~G-~~~lvG~N-----GaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~ 116 (415)
T 4aby_A 48 LATITQLELEL-----GGG-FCAFTGET-----GAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADS 116 (415)
T ss_dssp ETTEEEEEEEC-----CSS-EEEEEESH-----HHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CE
T ss_pred ccceeeEEEec-----CCC-cEEEECCC-----CCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEE
Confidence 35688999888 455 88888887 799999999997776420
Q ss_pred ------CceeeEEEECCEecCc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC-------------------
Q psy2519 83 ------CIIDGDIRVNGKPVEG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD------------------- 132 (622)
Q Consensus 83 ------~~~~G~I~~~G~~~~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~------------------- 132 (622)
...+|++.+||++++. + .+..+++++|++.++.. +..+...|.-.....
T Consensus 117 l~r~~~~~~~~~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~-~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~ 195 (415)
T 4aby_A 117 ASRRLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLL-SPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRL 195 (415)
T ss_dssp EEEEEETTSCEEEEETTEEECHHHHHHHHTTTEEEETTTCTTTTS-SHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCCceEEEECCEECCHHHHHHHHhhceEEecCccccccc-CHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHH
Confidence 0126899999999874 2 34458999998765543 555554442211100
Q ss_pred ----c----------------------------------cccHHHHHHHHHHHHHHhCCCcccC----------------
Q psy2519 133 ----R----------------------------------RVKAYQRIALINSLLIELGLMNSQH---------------- 158 (622)
Q Consensus 133 ----~----------------------------------~~~~~~~~~~v~~~l~~lgL~~~~~---------------- 158 (622)
. ........+.+.+.++.+++.+..-
T Consensus 196 ~~l~~~~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~ 275 (415)
T 4aby_A 196 ERLQASESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLS 275 (415)
T ss_dssp HHC-----------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEE
T ss_pred HHHHhhhhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCc
Confidence 0 0000011234555666676643100
Q ss_pred C---ccCCc---CCCCccc-cChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe
Q psy2519 159 T---RIGSS---SITQKVV-LSGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI 229 (622)
Q Consensus 159 ~---~v~~~---~~~~~~g-LSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t 229 (622)
+ .+... .+..++. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|++++ .|.|||+||
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~--~~~~vi~it 353 (415)
T 4aby_A 276 DVLLRFSANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLA--DTRQVLVVT 353 (415)
T ss_dssp EEEEEEESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHT--TTSEEEEEC
T ss_pred eEEEEEEcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHh--CCCEEEEEe
Confidence 0 00000 0011122 5999999999999999999 9999999999999999999999999997 389999999
Q ss_pred ccCcHHHHhhccceeee----cCCceEEec
Q psy2519 230 HQPSSELIDMFDKIILL----ADSRTAFIG 255 (622)
Q Consensus 230 H~~~~~i~~~~D~v~~L----~~G~iv~~G 255 (622)
|++ ++.+.||++++| ++|+++...
T Consensus 354 H~~--~~~~~~d~i~~l~k~~~~G~~~~~~ 381 (415)
T 4aby_A 354 HLA--QIAARAHHHYKVEKQVEDGRTVSHV 381 (415)
T ss_dssp SCH--HHHTTCSEEEEEEEEEETTEEEEEE
T ss_pred CcH--HHHhhcCeEEEEEEeccCCceEEEE
Confidence 996 456889999999 999987653
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-23 Score=224.07 Aligned_cols=79 Identities=23% Similarity=0.344 Sum_probs=73.8
Q ss_pred cChHHHHHHHHHHHHh------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERKRLSFATELL------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+||+||+ .+|++|||||||+|||+.++..+++.|+++++ .|.|||++||++ +. .+.+|++++
T Consensus 280 LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~-~g~tvi~itH~~-~~-~~~~d~~~~ 356 (365)
T 3qf7_A 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELER-LNKVIVFITHDR-EF-SEAFDRKLR 356 (365)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG-SSSEEEEEESCH-HH-HTTCSCEEE
T ss_pred CCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh-CCCEEEEEecch-HH-HHhCCEEEE
Confidence 9999999999999999 69999999999999999999999999999986 699999999996 34 688999999
Q ss_pred ecCCceEE
Q psy2519 246 LADSRTAF 253 (622)
Q Consensus 246 L~~G~iv~ 253 (622)
|++|+++.
T Consensus 357 l~~G~i~~ 364 (365)
T 3qf7_A 357 ITGGVVVN 364 (365)
T ss_dssp EETTEEC-
T ss_pred EECCEEEe
Confidence 99999875
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.9e-23 Score=214.50 Aligned_cols=85 Identities=18% Similarity=0.350 Sum_probs=71.5
Q ss_pred cChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce--ee
Q psy2519 172 LSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI--IL 245 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v--~~ 245 (622)
||||||||++||++|+ .+|++|||||||++||+..+..+.+.|++++ .|.|||++||++ ++.+.||++ ++
T Consensus 220 lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~--~~~~vi~~tH~~--~~~~~~d~~~~v~ 295 (322)
T 1e69_A 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENS--KHTQFIVITHNK--IVMEAADLLHGVT 295 (322)
T ss_dssp SCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHT--TTSEEEEECCCT--TGGGGCSEEEEEE
T ss_pred CCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc--CCCeEEEEECCH--HHHhhCceEEEEE
Confidence 9999999999999998 5789999999999999999999999999984 479999999995 567889987 78
Q ss_pred ecCCce-EEecChHHH
Q psy2519 246 LADSRT-AFIGSKDAA 260 (622)
Q Consensus 246 L~~G~i-v~~G~~~~~ 260 (622)
|.+|+. +.....++.
T Consensus 296 ~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 296 MVNGVSAIVPVEVEKI 311 (322)
T ss_dssp ESSSCEEEEECCC---
T ss_pred EeCCEEEEEEEEcchh
Confidence 887754 444555543
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=6.2e-26 Score=223.25 Aligned_cols=140 Identities=13% Similarity=0.100 Sum_probs=99.4
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC---ccccccEEE
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE---GKFRSACGF 106 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~---~~~r~~igy 106 (622)
|+.++|+++ .+|+.+.++|+| ||||||||++|+|+ +| .+|+|. +.++. ...++.+||
T Consensus 11 g~~~~l~~i---------~~Ge~~~liG~n-----GsGKSTLl~~l~Gl-~p---~~G~I~--~~~~~~~~~~~~~~ig~ 70 (208)
T 3b85_A 11 GQKHYVDAI---------DTNTIVFGLGPA-----GSGKTYLAMAKAVQ-AL---QSKQVS--RIILTRPAVEAGEKLGF 70 (208)
T ss_dssp HHHHHHHHH---------HHCSEEEEECCT-----TSSTTHHHHHHHHH-HH---HTTSCS--EEEEEECSCCTTCCCCS
T ss_pred hHHHHHHhc---------cCCCEEEEECCC-----CCCHHHHHHHHhcC-CC---cCCeee--eEEecCCchhhhcceEE
Confidence 666778875 367788888777 89999999999999 87 478883 22222 135778999
Q ss_pred EecCCCCCCCCCHHHHH-HHHH----HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHH
Q psy2519 107 MYQHDLFSPSLTVYEHL-YFMA----LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLS 181 (622)
Q Consensus 107 V~Q~~~l~~~lTV~E~l-~f~~----~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvs 181 (622)
|+|++ +||+ .+.. ..... .. .++++++++. | + ||||||+
T Consensus 71 v~q~~--------~enl~~~~~~~~~~~~~~--~~----~~~~~~~l~~-g-------------------l--Gq~qrv~ 114 (208)
T 3b85_A 71 LPGTL--------NEKIDPYLRPLHDALRDM--VE----PEVIPKLMEA-G-------------------I--VEVAPLA 114 (208)
T ss_dssp SCC--------------CTTTHHHHHHHTTT--SC----TTHHHHHHHT-T-------------------S--EEEEEGG
T ss_pred ecCCH--------HHHHHHHHHHHHHHHHHh--cc----HHHHHHHHHh-C-------------------C--chHHHHH
Confidence 99975 4555 2311 11100 00 1234444442 1 5 9999999
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
|||||+.+|++|||||||+| ++.++.+.|+++ + .|+||| +|||+
T Consensus 115 lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~-~g~tii-vtHd~ 158 (208)
T 3b85_A 115 YMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G-FGSKMV-VTGDI 158 (208)
T ss_dssp GGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C-TTCEEE-EEEC-
T ss_pred HHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c-CCCEEE-EECCH
Confidence 99999999999999999999 899999999998 5 689999 99996
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.85 E-value=2.7e-25 Score=218.31 Aligned_cols=183 Identities=10% Similarity=-0.020 Sum_probs=124.9
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
+..+++.| .++ .+|+.++++|+| |||||||+|+|+|+.+. ..+.+.+.+.+.....++.++|+||
T Consensus 7 ~~~~~~~~--~~i-----~~Gei~~l~Gpn-----GsGKSTLl~~l~gl~~~---i~~~~~~~~~~~~~~~~~~i~~~~q 71 (207)
T 1znw_A 7 DTKPTARG--QPA-----AVGRVVVLSGPS-----AVGKSTVVRCLRERIPN---LHFSVSATTRAPRPGEVDGVDYHFI 71 (207)
T ss_dssp -------------------CCCEEEEECST-----TSSHHHHHHHHHHHSTT---CEECCCEESSCCCTTCCBTTTBEEC
T ss_pred CCCcCCCC--CCC-----CCCCEEEEECCC-----CCCHHHHHHHHHhhCCc---eEEcccccccCCcccccCCCeeEec
Confidence 34566776 455 567777888776 89999999999999853 3333333333222224577999999
Q ss_pred CCCCCCCCCHHHHHHHHHHcCC---CccccHHHHHHHHHHH------HHHhCCCcccCCccCCcCCCCccccChHHHHHH
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKL---DRRVKAYQRIALINSL------LIELGLMNSQHTRIGSSSITQKVVLSGGERKRL 180 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~---~~~~~~~~~~~~v~~~------l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv 180 (622)
++.+++.+|+.|++........ ....++.+.++++++. ++.+|+.+.+++.+.. ||
T Consensus 72 ~~~~~~~~~~~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~--------lS------- 136 (207)
T 1znw_A 72 DPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEA--------VT------- 136 (207)
T ss_dssp CHHHHHHHHHTTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTS--------EE-------
T ss_pred CHHHHHHHHhcCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCc--------EE-------
Confidence 9888888888887643211100 0122344455566665 6666766666666444 77
Q ss_pred HHHHHHhhCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 181 SFATELLTDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+|+.+|++++|||||+|+ |+..+.++.+.+++++++.|.|+|++|||+ +++.++||||++|.
T Consensus 137 ----~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl-~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 ----VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRL-ESACAELVSLLVGT 202 (207)
T ss_dssp ----EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSH-HHHHHHHHHHHC--
T ss_pred ----EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCH-HHHHHHHHHHHHhc
Confidence 899999999999999998 788999999999999875799999999996 78999999999985
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.85 E-value=4.9e-22 Score=232.05 Aligned_cols=164 Identities=25% Similarity=0.353 Sum_probs=129.7
Q ss_pred HHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc--c---cHHHHHHH
Q psy2519 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR--V---KAYQRIAL 143 (622)
Q Consensus 69 STLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~--~---~~~~~~~~ 143 (622)
+|...|..++++| ..|+|.++|+++.. +..+||.|++.|...+..... . ...+..++
T Consensus 382 ~~C~~C~g~rl~~---~~~~V~i~G~~i~~---------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~~~~~~ 443 (916)
T 3pih_A 382 RTCSVCGGRRLNR---EALSVKINGLNIHE---------------FTELSISEELEFLKNLNLTEREREIVGELLKEIEK 443 (916)
T ss_dssp EECTTTCSCCBCT---TGGGEEETTEEHHH---------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHHHHHHH
T ss_pred ccchhcccccCCh---HhcCcEECCccHHH---------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhHHHHHH
Confidence 3456777788888 48999999998742 334678888877544332110 0 00111223
Q ss_pred HHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEEEeCCCCCCCHHHHHHHHHHHHHHHhc
Q psy2519 144 INSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLLCDEPTTGLDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 144 v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgLD~~~~~~i~~~l~~l~~~ 220 (622)
..+.+..+||.+. .++.+++ |||||||||+||++|+.+|+ +|||||||+|||+..+.+++++|+++++
T Consensus 444 ~~~~L~~vgL~~l~l~r~~~~--------LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~- 514 (916)
T 3pih_A 444 RLEFLVDVGLEYLTLSRSATT--------LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD- 514 (916)
T ss_dssp HHHHHHTTTCTTCBTTSBGGG--------CCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT-
T ss_pred HHHHHHHcCCccccccCCccc--------CCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh-
Confidence 4567888999764 6788777 99999999999999999887 9999999999999999999999999987
Q ss_pred CCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 221 RKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 221 ~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
.|.|||+|+||+ +.+ ..||+|++| ++|++++.|+++++.
T Consensus 515 ~G~TvivVtHd~-~~~-~~aD~ii~lgpgag~~~G~iv~~G~~~e~~ 559 (916)
T 3pih_A 515 LGNTVIVVEHDE-EVI-RNADHIIDIGPGGGTNGGRVVFQGTVDELL 559 (916)
T ss_dssp TTCEEEEECCCH-HHH-HTCSEEEEEESSSGGGCSEEEEEECHHHHH
T ss_pred cCCEEEEEeCCH-HHH-HhCCEEEEEcCCcccCCCEEEEeechhhhh
Confidence 699999999996 455 569999999 899999999999875
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.85 E-value=1.4e-22 Score=194.44 Aligned_cols=146 Identities=10% Similarity=0.025 Sum_probs=100.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
+.++|+| |||||||+++|+|++.. ...|... ++... ..++.+||++|+. ++.+++ + +....
T Consensus 3 i~l~G~n-----GsGKTTLl~~l~g~l~i--~~~g~~~---~~~~~~~~~~~ig~~~~~~------~~~~~~-~-~~~~~ 64 (178)
T 1ye8_A 3 IIITGEP-----GVGKTTLVKKIVERLGK--RAIGFWT---EEVRDPETKKRTGFRIITT------EGKKKI-F-SSKFF 64 (178)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHHHGG--GEEEEEE---EEEC------CCEEEEEET------TCCEEE-E-EETTC
T ss_pred EEEECCC-----CCCHHHHHHHHHHHhCC--cCCCEEh---hhhccccccceeEEEeecC------cHHHHH-H-HhhcC
Confidence 4566676 89999999999998752 2334221 12211 3467899999975 333332 1 01000
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH-----HhhCCCeEEEeC--CCCCCCH
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE-----LLTDPALLLCDE--PTTGLDS 204 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a-----L~~~P~lLlLDE--PTsgLD~ 204 (622)
.-.+..++++.+ ||||||||++||++ |+.+|++++||| ||++||+
T Consensus 65 --------------------~~~~~~~~~~~~--------lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~ 116 (178)
T 1ye8_A 65 --------------------TSKKLVGSYGVN--------VQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSK 116 (178)
T ss_dssp --------------------CCSSEETTEEEC--------HHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCH
T ss_pred --------------------CccccccccccC--------cCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCH
Confidence 001234555555 99999999999996 999999999999 9999999
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEec---cCcHHHHhhccceeeecCCceEE
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIH---QPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH---~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
.....+.+.+++ .+.|+|+++| + .+.+.+++|| .+|+++.
T Consensus 117 ~~~~~l~~~l~~----~~~~~i~~~H~~h~-~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 117 KFRDLVRQIMHD----PNVNVVATIPIRDV-HPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHHHHHHHTC----TTSEEEEECCSSCC-SHHHHHHHTC----TTCEEEE
T ss_pred HHHHHHHHHHhc----CCCeEEEEEccCCC-chHHHHHHhc----CCcEEEE
Confidence 999998888865 4677888886 6 4678888887 4566654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=3.3e-24 Score=230.87 Aligned_cols=177 Identities=11% Similarity=0.112 Sum_probs=135.6
Q ss_pred eeeeEeeeeEEEEcccCCCc--------------------ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE
Q psy2519 32 VQVYAIVNLLVIMDQTASTS--------------------KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV 91 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~--------------------~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~ 91 (622)
..+++++++++ ++|+ .+.++|+| |||||||+|+|+|+.+| .+|+|.+
T Consensus 36 ~~~l~~is~~i-----~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~n-----GaGKSTLln~L~Gl~~p---~~GsI~~ 102 (413)
T 1tq4_A 36 QEILNLIELRM-----RAGNIQLTNSAISDALKEIDSSVLNVAVTGET-----GSGKSSFINTLRGIGNE---EEGAAKT 102 (413)
T ss_dssp HHHHHHHHHHH-----HHTCHHHHHHHHHHHHHHHHHCCEEEEEEECT-----TSSHHHHHHHHHTCCTT---STTSCCC
T ss_pred HHHhhhcccee-----cCCCCcccchhhhhhhhhcccCCeEEEEECCC-----CCcHHHHHHHHhCCCCc---cCceEEE
Confidence 35678888877 4455 77888887 79999999999999998 4899999
Q ss_pred CCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 92 NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 92 ~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+|.+.+ ++ ++++|++ .++.+|+.|++.++.. +.+++++++.+++.+.. .. -.
T Consensus 103 ~g~~~t---~~--~~v~q~~-~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~~-~~-~~-------- 154 (413)
T 1tq4_A 103 GVVEVT---ME--RHPYKHP-NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEYD-FF-II-------- 154 (413)
T ss_dssp CC-------CC--CEEEECS-SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGCS-EE-EE--------
T ss_pred CCeecc---ee--EEecccc-ccCCeeehHhhcccch------------HHHHHHHHHHcCCCccC-Ce-EE--------
Confidence 998764 22 7899985 5788999998755320 12357889999987642 22 11
Q ss_pred cChH--HHHHHHHHHHHhh----------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh----cC----CCEEEEEecc
Q psy2519 172 LSGG--ERKRLSFATELLT----------DPALLLCDEPTTGLDSFSASKLIRMMRELTS----QR----KKTVLCTIHQ 231 (622)
Q Consensus 172 LSgG--qrqRvsIA~aL~~----------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~----~~----g~tvi~~tH~ 231 (622)
|||| ||||+.||++|+. +|++++|||||+|||+.++.++.+.++++.+ +. ..+|++++|+
T Consensus 155 lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~ 234 (413)
T 1tq4_A 155 ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKN 234 (413)
T ss_dssp EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTC
T ss_pred eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCc
Confidence 9999 9999999999999 9999999999999999999999999999852 23 3678899998
Q ss_pred CcH-HHHhhcccee-eecCC
Q psy2519 232 PSS-ELIDMFDKII-LLADS 249 (622)
Q Consensus 232 ~~~-~i~~~~D~v~-~L~~G 249 (622)
... .+.+++|++. .|.+|
T Consensus 235 l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 235 VCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp TTSTTHHHHHHHHHHHSCGG
T ss_pred CCccCHHHHHHHHHHhCccc
Confidence 632 2888888874 44333
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.3e-23 Score=226.75 Aligned_cols=192 Identities=13% Similarity=0.021 Sum_probs=152.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE-
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK- 94 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~- 94 (622)
..++++||++.|.. +.++++++ +++ ++|+.+.|+|+| ||||||||++|+|+.+| .+|.|.++|+
T Consensus 130 ~~l~~~~v~~~~~t-g~~vld~v-l~i-----~~Gq~~~IvG~s-----GsGKSTLl~~Iag~~~~---~~G~i~~~G~r 194 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT-GVRAINAL-LTV-----GRGQRMGLFAGS-----GVGKSVLLGMMARYTRA---DVIVVGLIGER 194 (438)
T ss_dssp CTTTSCCCCSBCCC-SCHHHHHH-SCC-----BTTCEEEEEECT-----TSSHHHHHHHHHHHSCC---SEEEEEEESCC
T ss_pred CceEEeccceecCC-CceEEeee-EEe-----cCCCEEEEECCC-----CCCHHHHHHHHhcccCC---CeEEEEEecee
Confidence 57899999999732 46789999 888 678888888887 89999999999999998 4899999998
Q ss_pred --ecCc---------cccccEEEEecC-CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 95 --PVEG---------KFRSACGFMYQH-DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 95 --~~~~---------~~r~~igyV~Q~-~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++.. .+++.++||+|+ +.+++.+||.+|+.+.++.... ..+++. ...|. +.
T Consensus 195 ~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~~-------~~~~v~---------~~ld~-l~ 257 (438)
T 2dpy_A 195 GREVKDFIENILGPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFRD-------RGQHVL---------LIMDS-LT 257 (438)
T ss_dssp HHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHHT-------TTCEEE---------EEEEC-HH
T ss_pred cHHHHHHHHhhccccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHHh-------CCCCHH---------HHHHh-HH
Confidence 4432 256789999995 6678889999999887643210 000000 11111 22
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh---cCCC-----EEEEEeccCcH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS---QRKK-----TVLCTIHQPSS 234 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~---~~g~-----tvi~~tH~~~~ 234 (622)
. +|+|| ||++|| +.+|++ |+|||+....++.++++++++ +.|. ||++++||+.
T Consensus 258 ~--------lS~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~- 318 (438)
T 2dpy_A 258 R--------YAMAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ- 318 (438)
T ss_dssp H--------HHHHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-
T ss_pred H--------HHHHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-
Confidence 3 99999 999999 889988 999999999999999999976 2374 9999999974
Q ss_pred HHHhhccceeeecCCceEEecChHHH
Q psy2519 235 ELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
..++|++++|.+|+++.+|++.++
T Consensus 319 --~~iad~v~~l~dG~Ivl~~~~~~~ 342 (438)
T 2dpy_A 319 --DPIADSARAILDGHIVLSRRLAEA 342 (438)
T ss_dssp --CHHHHHHHHHSSEEEEECHHHHHT
T ss_pred --chhhceEEEEeCcEEEEeCCHHHc
Confidence 568999999999999999988765
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=6.9e-22 Score=188.27 Aligned_cols=64 Identities=9% Similarity=0.182 Sum_probs=58.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------------HHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSF----------------SASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~----------------~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
.|||||||++||++++.+|++|+|||||++||+. .+.++.+.++++++ +|.|+|++||++ ++
T Consensus 84 ~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~-~g~tvi~vtH~~-~~ 161 (171)
T 4gp7_A 84 QESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQR-EGFRYVYILNSP-EE 161 (171)
T ss_dssp SHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHH-HTCSEEEEECSH-HH
T ss_pred CHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHh-cCCcEEEEeCCH-HH
Confidence 7999999999999999999999999999999999 66999999999987 499999999996 45
Q ss_pred HH
Q psy2519 236 LI 237 (622)
Q Consensus 236 i~ 237 (622)
+.
T Consensus 162 ~~ 163 (171)
T 4gp7_A 162 VE 163 (171)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-24 Score=223.98 Aligned_cols=170 Identities=11% Similarity=0.087 Sum_probs=128.0
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++++||+|+|. .++|+++++++ ++|+.++|+|+| |||||||+++|+|+. +|+|
T Consensus 100 ~~i~~~~vs~~y~---~~vL~~vsl~i-----~~Ge~vaIvGps-----GsGKSTLl~lL~gl~------~G~I------ 154 (305)
T 2v9p_A 100 TFFNYQNIELITF---INALKLWLKGI-----PKKNCLAFIGPP-----NTGKSMLCNSLIHFL------GGSV------ 154 (305)
T ss_dssp HHHHHTTCCHHHH---HHHHHHHHHTC-----TTCSEEEEECSS-----SSSHHHHHHHHHHHH------TCEE------
T ss_pred CeEEEEEEEEEcC---hhhhccceEEe-----cCCCEEEEECCC-----CCcHHHHHHHHhhhc------CceE------
Confidence 4588999999984 57899999999 677788888776 899999999999987 4877
Q ss_pred cCccccccEEEEecCCCCCCCCCHHH-HHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYE-HLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E-~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
++|++|++.+++. |++| |+.+.. ..+. .+.+.++.+ |.+..+ ..+ |||
T Consensus 155 --------~~~v~q~~~lf~~-ti~~~ni~~~~------~~~~-----~~~~~i~~~-L~~gld--g~~--------LSg 203 (305)
T 2v9p_A 155 --------LSFANHKSHFWLA-SLADTRAALVD------DATH-----ACWRYFDTY-LRNALD--GYP--------VSI 203 (305)
T ss_dssp --------ECGGGTTSGGGGG-GGTTCSCEEEE------EECH-----HHHHHHHHT-TTGGGG--TCC--------EEC
T ss_pred --------EEEecCccccccc-cHHHHhhccCc------cccH-----HHHHHHHHH-hHccCC--ccC--------cCH
Confidence 3567888777764 7776 776531 1111 344556654 444444 222 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||| ||||+.+|+||| |++||+.+...+.. .+|++. ..+.+|+| +|++|++++.
T Consensus 204 GqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---------------ltH~~~--~~~~aD~i-vl~~G~iv~~ 258 (305)
T 2v9p_A 204 DRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---------------LHSRVQ--TFRFEQPC-TDESGEQPFN 258 (305)
T ss_dssp CCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG---------------GTTTEE--EEECCCCC-CCC---CCCC
T ss_pred HHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH---------------HhCCHH--HHHhCCEE-EEeCCEEEEe
Confidence 99999 999999999999 99999999888752 288863 45789999 9999999999
Q ss_pred cChHHHHHHHHh
Q psy2519 255 GSKDAALAFLES 266 (622)
Q Consensus 255 G~~~~~~~~~~~ 266 (622)
|+++++...|.+
T Consensus 259 g~~~el~~~y~~ 270 (305)
T 2v9p_A 259 ITDADWKSFFVR 270 (305)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 999988555543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.8e-23 Score=208.42 Aligned_cols=145 Identities=11% Similarity=0.105 Sum_probs=96.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
+.++|+| |||||||+|+|+|+..| .+|+|.++|+++.. ..++.+||++|++.+++.+||.||+.|+.....
T Consensus 5 v~lvG~n-----GaGKSTLln~L~g~~~~---~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~ 76 (270)
T 3sop_A 5 IMVVGQS-----GLGKSTLVNTLFKSQVS---RKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINN 76 (270)
T ss_dssp EEEEESS-----SSSHHHHHHHHHHHHC---------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCCC---CCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhccc
Confidence 4567776 89999999999999998 58999999998865 356789999999999999999999999754432
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI 211 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~ 211 (622)
.. . .+.+.+.++ .+..+...++ ||||||||+++||+++. ++++||||.|||+.. .
T Consensus 77 ~~--~----~~~i~~~~~----~~~~~~~~~~--------LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~ 131 (270)
T 3sop_A 77 EN--C----WEPIEKYIN----EQYEKFLKEE--------VNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----L 131 (270)
T ss_dssp TT--C----SHHHHHHHH----HHHHHHHHHH--------SCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----H
T ss_pred HH--H----HHHHHHHHH----HHHHhhhHHh--------cCcccchhhhhheeeee---eEEEecCCCcCCHHH----H
Confidence 11 1 112223332 2333445444 99999999999999886 999999999999987 5
Q ss_pred HHHHHHHhcCCCEEEEEeccC
Q psy2519 212 RMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 212 ~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.++++++ . .+||+++|..
T Consensus 132 ~~l~~L~~-~-~~vI~Vi~K~ 150 (270)
T 3sop_A 132 EFMKHLSK-V-VNIIPVIAKA 150 (270)
T ss_dssp HHHHHHHT-T-SEEEEEETTG
T ss_pred HHHHHHHh-c-CcEEEEEecc
Confidence 66777765 4 8999999863
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.4e-20 Score=212.96 Aligned_cols=136 Identities=23% Similarity=0.353 Sum_probs=113.8
Q ss_pred CCCCCHHHHHHHHHHcCCCcccc------HHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 114 SPSLTVYEHLYFMALLKLDRRVK------AYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 114 ~~~lTV~E~l~f~~~l~~~~~~~------~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+..+||.|++.|...+.++.... .++..+++ +.++.+||... .++.+++ |||||||||+||++|
T Consensus 449 ~~~ltV~e~~~f~e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~t--------LSGGEkQRV~LA~aL 519 (972)
T 2r6f_A 449 VTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGT--------LSGGEAQRIRLATQI 519 (972)
T ss_dssp HHTSBHHHHHHHHHHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGG--------CCHHHHHHHHHHHHH
T ss_pred HhhCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCcccc--------CCHHHHHHHHHHHHH
Confidence 35689999999977665432100 02344555 46899999864 6888777 999999999999999
Q ss_pred hhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChH
Q psy2519 187 LTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKD 258 (622)
Q Consensus 187 ~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~ 258 (622)
..+| ++|+|||||+|||+.....+.+.|++|++ .|.|||+|+|++ +++ +.||+|++| ++|++++.|+++
T Consensus 520 ~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~G~TVIvVeHdl-~~i-~~ADrIi~LgpgaG~~gG~iv~~G~~~ 596 (972)
T 2r6f_A 520 GSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-LGNTLIVVEHDE-DTM-LAADYLIDIGPGAGIHGGEVVAAGTPE 596 (972)
T ss_dssp TTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-TTCEEEEECCCH-HHH-HSCSEEEEECSSSGGGCCSEEEEECTT
T ss_pred hhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-CCCEEEEEecCH-HHH-HhCCEEEEeCCCccCCCCEEEEecCHH
Confidence 9985 99999999999999999999999999986 799999999996 454 679999999 799999999998
Q ss_pred HHH
Q psy2519 259 AAL 261 (622)
Q Consensus 259 ~~~ 261 (622)
++.
T Consensus 597 e~~ 599 (972)
T 2r6f_A 597 EVM 599 (972)
T ss_dssp TTT
T ss_pred HHH
Confidence 764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=6.9e-22 Score=205.21 Aligned_cols=167 Identities=11% Similarity=0.062 Sum_probs=128.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc--cccEEEEecCCC-CCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FSPS 116 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~--r~~igyV~Q~~~-l~~~ 116 (622)
++|+.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .+ ++.++|++|++. ++|.
T Consensus 98 ~~g~vi~lvG~n-----GsGKTTll~~Lag~l~~---~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 98 RKPAVIMIVGVN-----GGGKTTSLGKLAHRLKN---EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp SSCEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred CCCcEEEEEcCC-----CCCHHHHHHHHHHHHHH---cCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 456677777776 89999999999999987 37999999998753 12 357999999988 8999
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEE
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLL 194 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLl 194 (622)
+||+|++.++..... . ..+++.+|+.+..++.+++ || |||++|||+|+.+|+ +|+
T Consensus 170 ~~v~e~l~~~~~~~~----d--------~~lldt~gl~~~~~~~~~e--------LS---kqr~~iaral~~~P~e~lLv 226 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGY----D--------VVLCDTSGRLHTNYSLMEE--------LI---ACKKAVGKIVSGAPNEILLV 226 (302)
T ss_dssp HHHHHHHHHHHHTTC----S--------EEEECCCCCSSCCHHHHHH--------HH---HHHHHHHTTSTTCCSEEEEE
T ss_pred HHHHHHHHHHHHcCC----c--------chHHhcCCCCcchhHHHHH--------HH---HHHHHHHHhhccCCCeeEEE
Confidence 999999988643211 0 1356677887777777665 99 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC--------cHHHHhhccceeeecCCceE
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~--------~~~i~~~~D~v~~L~~G~iv 252 (622)
|| ||+|||+... +++++++.|.|+|++||.. .+.+.+..+.|.++..|+.+
T Consensus 227 LD-ptsglD~~~~------~~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 227 LD-GNTGLNMLPQ------AREFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp EE-GGGGGGGHHH------HHHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred Ee-CCCCcCHHHH------HHHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 99 9999999855 3566654699999999932 12344556778888888653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.6e-20 Score=213.75 Aligned_cols=178 Identities=16% Similarity=0.223 Sum_probs=129.5
Q ss_pred CCCChHHHHHHHhCCCCCCC------ceeeEEEECCEecCc----cccccEEEEecCCCC---CC----CCCHHHHHHHH
Q psy2519 64 PNVDFSELIRLFLSQVIDDC------IIDGDIRVNGKPVEG----KFRSACGFMYQHDLF---SP----SLTVYEHLYFM 126 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~------~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l---~~----~lTV~E~l~f~ 126 (622)
|..||+++.+.+....=|.+ ..+|+|.++|+++.+ ...+.++++.|.+.- .. .++- ++....
T Consensus 271 ~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~ 349 (842)
T 2vf7_A 271 SASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAERVKNRP-EQAIAL 349 (842)
T ss_dssp CHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTTSSSSCS-SHHHHH
T ss_pred CHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccchhhcch-hhHHHH
Confidence 34689999988876332211 047899999998754 123333444332110 00 0110 111111
Q ss_pred HHcCCCccccHHHHHHHHHHHHHHhCCCcc-cCCccCCcCCCCccccChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCC
Q psy2519 127 ALLKLDRRVKAYQRIALINSLLIELGLMNS-QHTRIGSSSITQKVVLSGGERKRLSFATELLTDP--ALLLCDEPTTGLD 203 (622)
Q Consensus 127 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD 203 (622)
..+ .++..++++ .++.+||.+. .++.+.+ |||||||||+||++|+.+| ++|+|||||+|||
T Consensus 350 ~~i-------~~ei~~rl~-~L~~vGL~~l~l~r~~~t--------LSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld 413 (842)
T 2vf7_A 350 QRM-------AADLVKRLD-VLLHLGLGYLGLDRSTPT--------LSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLH 413 (842)
T ss_dssp HHH-------HHHHHHHHH-HHHHTTCTTSBTTCBGGG--------SCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCC
T ss_pred HHH-------HHHHHHHHH-HHHhCCCCcCCccCCcCc--------CCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCC
Confidence 111 134455665 6889999865 6888777 9999999999999999999 5999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee------cCCceEEecChHHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL------ADSRTAFIGSKDAAL 261 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L------~~G~iv~~G~~~~~~ 261 (622)
+..+..+.++|++|++ .|.|||+++|++ + +.+.||+|++| ++|++++.|+++++.
T Consensus 414 ~~~~~~L~~~l~~L~~-~G~TVIvVeHdl-~-~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~ 474 (842)
T 2vf7_A 414 PADTEALLSALENLKR-GGNSLFVVEHDL-D-VIRRADWLVDVGPEAGEKGGEILYSGPPEGLK 474 (842)
T ss_dssp GGGHHHHHHHHHHHHT-TTCEEEEECCCH-H-HHTTCSEEEEECSSSGGGCCSEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHH-cCCEEEEEcCCH-H-HHHhCCEEEEeCCCcccCCCEEEEecCHHHHH
Confidence 9999999999999987 799999999996 4 55789999999 799999999998764
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-21 Score=200.53 Aligned_cols=166 Identities=11% Similarity=0.066 Sum_probs=129.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc--cccEEEEecCCC-CCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF--RSACGFMYQHDL-FSPS 116 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~--r~~igyV~Q~~~-l~~~ 116 (622)
++++.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .+ ++.++|++|++. ++|.
T Consensus 155 ~~g~vi~lvG~n-----GsGKTTll~~Lag~l~~---~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~ 226 (359)
T 2og2_A 155 RKPAVIMIVGVN-----GGGKTTSLGKLAHRLKN---EGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 226 (359)
T ss_dssp SSSEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHH
T ss_pred CCCeEEEEEcCC-----CChHHHHHHHHHhhccc---cCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChh
Confidence 456677777776 89999999999999987 37999999998743 11 457999999988 8999
Q ss_pred CCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCC--eEE
Q psy2519 117 LTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPA--LLL 194 (622)
Q Consensus 117 lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~--lLl 194 (622)
+||+|++.++..... . ..+++.+|+.+..++.+.+ || |||++|||+|+.+|+ +|+
T Consensus 227 ~tv~e~l~~~~~~~~----d--------~~lldt~Gl~~~~~~~~~e--------LS---kqr~~iaral~~~P~e~lLv 283 (359)
T 2og2_A 227 TVLSKAVKRGKEEGY----D--------VVLCDTSGRLHTNYSLMEE--------LI---ACKKAVGKIVSGAPNEILLV 283 (359)
T ss_dssp HHHHHHHHHHHHTTC----S--------EEEEECCCCSSCCHHHHHH--------HH---HHHHHHHHHSTTCCSEEEEE
T ss_pred hhHHHHHHHHHhCCC----H--------HHHHHhcCCChhhhhHHHH--------HH---HHHHHHHHHHhcCCCceEEE
Confidence 999999998643211 0 1345677887777777655 99 999999999999999 999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC--------cHHHHhhccceeeecCCce
Q psy2519 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP--------SSELIDMFDKIILLADSRT 251 (622)
Q Consensus 195 LDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~--------~~~i~~~~D~v~~L~~G~i 251 (622)
|| ||+|||+.+.. +++.++.|.|+|++||.. .+.+....+.|.++..|+.
T Consensus 284 LD-pttglD~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 284 LD-GNTGLNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp EE-GGGGGGGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred Ec-CCCCCCHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 99 99999998653 456554699999999941 1234455677888888765
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.7e-22 Score=210.67 Aligned_cols=190 Identities=8% Similarity=-0.021 Sum_probs=130.8
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEE------------------EEcccCCCcceEEEecCCcCCCCCChHHHHHH
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLV------------------IMDQTASTSKTVILFKNNEEVPNVDFSELIRL 74 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~------------------~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~ 74 (622)
..++.++++||++.| + ++++++++.+ .....++++.+.|+|+| |||||||+++
T Consensus 39 ~~~~~i~~~~v~~~y--~--p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~s-----GsGKSTL~~~ 109 (312)
T 3aez_A 39 GLGEQIDLLEVEEVY--L--PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSV-----AVGKSTTARV 109 (312)
T ss_dssp CTTCCCCHHHHHHTH--H--HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCT-----TSCHHHHHHH
T ss_pred CCCCeEEeeehhhhh--h--hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCC-----CchHHHHHHH
Confidence 567889999999998 2 4555555430 00112456666666665 8999999999
Q ss_pred HhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC
Q psy2519 75 FLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM 154 (622)
Q Consensus 75 l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~ 154 (622)
|+|+++|. .|+ +.+++|+|++.+++. |++||+.+... +. .+.....+++.+.++.++ .
T Consensus 110 L~gll~~~---~G~-------------~~v~~v~qd~~~~~~-t~~e~~~~~~~-~g---~~~~~d~~~~~~~L~~l~-~ 167 (312)
T 3aez_A 110 LQALLARW---DHH-------------PRVDLVTTDGFLYPN-AELQRRNLMHR-KG---FPESYNRRALMRFVTSVK-S 167 (312)
T ss_dssp HHHHHHTS---TTC-------------CCEEEEEGGGGBCCH-HHHHHTTCTTC-TT---SGGGBCHHHHHHHHHHHH-T
T ss_pred HHhhcccc---CCC-------------CeEEEEecCccCCcc-cHHHHHHHHHh-cC---CChHHHHHHHHHHHHHhC-C
Confidence 99999872 332 468999999999888 99999865321 11 122222356778888888 5
Q ss_pred cccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH
Q psy2519 155 NSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS 234 (622)
Q Consensus 155 ~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~ 234 (622)
+..+..+.. |||||+||+++|++++.+|+|||+|||+..+|+.. ..+.+..+. .|+++|+...
T Consensus 168 ~~~~~~~~~--------lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~-~I~V~a~~~~ 230 (312)
T 3aez_A 168 GSDYACAPV--------YSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDF-SLYVDARIED 230 (312)
T ss_dssp TCSCEEEEE--------EETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSE-EEEEEECHHH
T ss_pred CcccCCccc--------CChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCc-EEEEECCHHH
Confidence 555566555 99999999999999999999999999999998621 122332333 4566666433
Q ss_pred HHHhhccceeeecCCc
Q psy2519 235 ELIDMFDKIILLADSR 250 (622)
Q Consensus 235 ~i~~~~D~v~~L~~G~ 250 (622)
......+|.+.+.+|+
T Consensus 231 ~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 231 IEQWYVSRFLAMRTTA 246 (312)
T ss_dssp HHHHHHHHHHHHTTTG
T ss_pred HHHHHHHHHHHHHhcc
Confidence 4444566666665554
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.77 E-value=4.8e-20 Score=193.83 Aligned_cols=141 Identities=14% Similarity=0.126 Sum_probs=111.8
Q ss_pred cCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-
Q psy2519 20 VPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG- 98 (622)
Q Consensus 20 ~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~- 98 (622)
+++++| | .++++++++.+ ++|+.++++|+| |||||||+++|+|+.+| .+|.|.++|.+...
T Consensus 151 ~~~v~f-y----~~~l~~l~~~i-----~~g~~v~i~G~~-----GsGKTTll~~l~g~~~~---~~g~i~i~~~~e~~~ 212 (330)
T 2pt7_A 151 YNLLDN-K----EQAISAIKDGI-----AIGKNVIVCGGT-----GSGKTTYIKSIMEFIPK---EERIISIEDTEEIVF 212 (330)
T ss_dssp TTTSTT-H----HHHHHHHHHHH-----HHTCCEEEEEST-----TSCHHHHHHHGGGGSCT---TSCEEEEESSCCCCC
T ss_pred cCchhh-H----HHHHhhhhhhc-----cCCCEEEEECCC-----CCCHHHHHHHHhCCCcC---CCcEEEECCeecccc
Confidence 778888 5 45788999888 577788888776 89999999999999998 48999999864211
Q ss_pred -cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 99 -KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 99 -~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
..++.+++++ | |||+
T Consensus 213 ~~~~~~i~~~~--------------------------------------------------------------g--gg~~ 228 (330)
T 2pt7_A 213 KHHKNYTQLFF--------------------------------------------------------------G--GNIT 228 (330)
T ss_dssp SSCSSEEEEEC--------------------------------------------------------------B--TTBC
T ss_pred ccchhEEEEEe--------------------------------------------------------------C--CChh
Confidence 1233334332 1 7899
Q ss_pred HHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 178 KRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
||++||++|..+|++|++||||+ .++.+.|+.+.. .+.|+|+++|+++ +.+.+||+++|.+|+..
T Consensus 229 ~r~~la~aL~~~p~ilildE~~~-------~e~~~~l~~~~~-g~~tvi~t~H~~~--~~~~~dri~~l~~g~~~ 293 (330)
T 2pt7_A 229 SADCLKSCLRMRPDRIILGELRS-------SEAYDFYNVLCS-GHKGTLTTLHAGS--SEEAFIRLANMSSSNSA 293 (330)
T ss_dssp HHHHHHHHTTSCCSEEEECCCCS-------THHHHHHHHHHT-TCCCEEEEEECSS--HHHHHHHHHHHHHTSGG
T ss_pred HHHHHHHHhhhCCCEEEEcCCCh-------HHHHHHHHHHhc-CCCEEEEEEcccH--HHHHhhhheehhcCCcc
Confidence 99999999999999999999998 246777888764 4568999999973 67899999999988754
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.76 E-value=4.5e-18 Score=179.58 Aligned_cols=73 Identities=38% Similarity=0.516 Sum_probs=67.1
Q ss_pred cChHHHH------HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERK------RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrq------RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||| |+++|++|+.+|++|||||||+|||+..+..+.+.|+++.+ .|.|||++||++ ++.+.||++++
T Consensus 249 lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~vi~~sH~~--~~~~~~d~~~~ 325 (339)
T 3qkt_A 249 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADHVIR 325 (339)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSEEEE
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEEChH--HHHHhCCEEEE
Confidence 9999999 66778888889999999999999999999999999999976 588999999995 57789999999
Q ss_pred ec
Q psy2519 246 LA 247 (622)
Q Consensus 246 L~ 247 (622)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 95
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.76 E-value=9.3e-19 Score=162.59 Aligned_cols=76 Identities=37% Similarity=0.482 Sum_probs=69.6
Q ss_pred cChHHHHHHHHH------HHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 172 LSGGERKRLSFA------TELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 172 LSgGqrqRvsIA------~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
||||||||++|| |+|+.+|++++|||||+|||+.++..+.+.|+++++ .|.|||++||++ ++.+.||++++
T Consensus 58 LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~-~~~tiiivsH~~--~~~~~~d~ii~ 134 (148)
T 1f2t_B 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLK-KIPQVILVSHDE--ELKDAADHVIR 134 (148)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGG-GSSEEEEEESCG--GGGGGCSEEEE
T ss_pred CCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHc-cCCEEEEEEChH--HHHHhCCEEEE
Confidence 999999999876 899999999999999999999999999999999976 589999999996 56789999999
Q ss_pred e--cCCc
Q psy2519 246 L--ADSR 250 (622)
Q Consensus 246 L--~~G~ 250 (622)
| .+|.
T Consensus 135 l~~~~g~ 141 (148)
T 1f2t_B 135 ISLENGS 141 (148)
T ss_dssp EEEETTE
T ss_pred EEcCCCe
Confidence 9 4554
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=8.2e-20 Score=193.06 Aligned_cols=191 Identities=13% Similarity=0.104 Sum_probs=138.6
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++++++.|.. ++.+++++ +.+ .+|+...|+|+| |||||||+++|+|+.+|+ .|.|.+.|++
T Consensus 44 ~~i~~~~l~~~~~t-g~~ald~l-l~i-----~~Gq~~gIiG~n-----GaGKTTLl~~I~g~~~~~---~g~i~~~G~~ 108 (347)
T 2obl_A 44 DPLLRQVIDQPFIL-GVRAIDGL-LTC-----GIGQRIGIFAGS-----GVGKSTLLGMICNGASAD---IIVLALIGER 108 (347)
T ss_dssp CSTTCCCCCSEECC-SCHHHHHH-SCE-----ETTCEEEEEECT-----TSSHHHHHHHHHHHSCCS---EEEEEEESCC
T ss_pred CCeeecccceecCC-CCEEEEee-eee-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCCC---EEEEEEeccc
Confidence 46889999998732 46789999 988 678888888887 899999999999999984 8999999976
Q ss_pred cCc-----------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccC--CccC
Q psy2519 96 VEG-----------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQH--TRIG 162 (622)
Q Consensus 96 ~~~-----------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~--~~v~ 162 (622)
... .+++.+++++|.+. ...+.+.-... ...+.+.....+ .+... ..+.
T Consensus 109 ~~ev~~~i~~~~~~~~~~~v~~~~~~~~-----~~~~r~~~~~~------------~~~~ae~~~~~~-~~vl~~ld~~~ 170 (347)
T 2obl_A 109 GREVNEFLALLPQSTLSKCVLVVTTSDR-----PALERMKAAFT------------ATTIAEYFRDQG-KNVLLMMDSVT 170 (347)
T ss_dssp HHHHHHHHTTSCHHHHTTEEEEEECTTS-----CHHHHHHHHHH------------HHHHHHHHHTTT-CEEEEEEETHH
T ss_pred HHHHHHHHHhhhhhhhhceEEEEECCCC-----CHHHHHHHHHH------------HHHHHHHHHhcc-ccHHHHHhhHH
Confidence 321 13456788887542 22222211100 000111111111 11110 2233
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh-cCCC-----EEEEEeccCcHHH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTS-QRKK-----TVLCTIHQPSSEL 236 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~-~~g~-----tvi~~tH~~~~~i 236 (622)
. ||+|| ||+++| +.+|++ |+||||....++.++++++.+ +.|. ||++++||+.
T Consensus 171 ~--------lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--- 229 (347)
T 2obl_A 171 R--------YARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--- 229 (347)
T ss_dssp H--------HHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC---
T ss_pred H--------HHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC---
Confidence 3 99999 899999 688877 999999999999999999975 4687 9999999974
Q ss_pred HhhccceeeecCCceEEecChHHH
Q psy2519 237 IDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 237 ~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
..+||+++++.+|+++.+|++++.
T Consensus 230 ~~i~d~v~~i~dG~Ivl~~~l~~~ 253 (347)
T 2obl_A 230 DPIGDEVRSILDGHIVLTRELAEE 253 (347)
T ss_dssp CHHHHHHHHHCSEEEEBCHHHHTT
T ss_pred ChhhhheEEeeCcEEEEeCCHHHc
Confidence 568999999999999999988755
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.2e-19 Score=185.68 Aligned_cols=184 Identities=10% Similarity=-0.010 Sum_probs=117.9
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEEECCEecCc-cccccEEEEecC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIRVNGKPVEG-KFRSACGFMYQH 110 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~~~G~~~~~-~~r~~igyV~Q~ 110 (622)
++|+++++.+ .+|+.++++|+| |||||||++.|+|...+. +| +|.+.+.+... ++++++..+.|+
T Consensus 23 ~~Ld~i~~~l-----~~G~~~~i~G~~-----G~GKTTl~~~ia~~~~~~---~G~~v~~~~~e~~~~~~~~r~~~~~~~ 89 (296)
T 1cr0_A 23 TGINDKTLGA-----RGGEVIMVTSGS-----GMGKSTFVRQQALQWGTA---MGKKVGLAMLEESVEETAEDLIGLHNR 89 (296)
T ss_dssp TTHHHHHCSB-----CTTCEEEEEEST-----TSSHHHHHHHHHHHHHHT---SCCCEEEEESSSCHHHHHHHHHHHHTT
T ss_pred HHHHHHhcCC-----CCCeEEEEEeCC-----CCCHHHHHHHHHHHHHHH---cCCeEEEEeCcCCHHHHHHHHHHHHcC
Confidence 4678887766 456666666665 899999999999998763 47 67554433332 333344444443
Q ss_pred CCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH-HHHHHHHHHHhhC
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLTD 189 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq-rqRvsIA~aL~~~ 189 (622)
.. +++.+++.... + +.++..+.++++++..++. .+...++ +|.+| +||+. |+++..+
T Consensus 90 ~~----~~~~~~l~~~~-~------~~~~~~~~~~~~l~~~~l~--i~~~~~~--------~~~~~l~~~~~-a~~~~~~ 147 (296)
T 1cr0_A 90 VR----LRQSDSLKREI-I------ENGKFDQWFDELFGNDTFH--LYDSFAE--------AETDRLLAKLA-YMRSGLG 147 (296)
T ss_dssp CC----GGGCHHHHHHH-H------HHTHHHHHHHHHHSSSCEE--EECCCCS--------CCHHHHHHHHH-HHHHTTC
T ss_pred CC----hhhccccccCC-C------CHHHHHHHHHHHhccCCEE--EECCCCC--------CCHHHHHHHHH-HHHHhcC
Confidence 22 12334443321 1 1222333444544332321 1112122 88888 67777 9999999
Q ss_pred CCeEEEeCCCC---C---CCH-HHHHHHHHHHHHHHhcCCCEEEEEeccCc-H--------------------HHHhhcc
Q psy2519 190 PALLLCDEPTT---G---LDS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-S--------------------ELIDMFD 241 (622)
Q Consensus 190 P~lLlLDEPTs---g---LD~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-~--------------------~i~~~~D 241 (622)
|+++++||||+ + +|+ ....++.+.|++++++.|+|||+++|+.. . .+.+.||
T Consensus 148 p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD 227 (296)
T 1cr0_A 148 CDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSD 227 (296)
T ss_dssp CSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCS
T ss_pred CCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCc
Confidence 99999999999 5 566 67788999999999867999999999951 3 6788999
Q ss_pred ceeeecCCce
Q psy2519 242 KIILLADSRT 251 (622)
Q Consensus 242 ~v~~L~~G~i 251 (622)
+|++|++|+.
T Consensus 228 ~vi~L~~~~~ 237 (296)
T 1cr0_A 228 TIIALERNQQ 237 (296)
T ss_dssp EEEEEEEC--
T ss_pred EEEEEecCcc
Confidence 9999998875
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.9e-18 Score=178.82 Aligned_cols=81 Identities=15% Similarity=0.193 Sum_probs=74.4
Q ss_pred ccChHHHHHHHHHHHHh---------hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 171 VLSGGERKRLSFATELL---------TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~---------~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
.||||||||++||++|+ .+|+||||||||++||+..+..+++.++++. .|+|++||. . . .+|
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~----qt~i~~th~-~-~---~~~ 335 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP----QAIVTGTEL-A-P---GAA 335 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS----EEEEEESSC-C-T---TCS
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC----cEEEEEEec-c-c---cCC
Confidence 49999999999999999 8999999999999999999999999998863 699999995 3 3 899
Q ss_pred ceeeecCCceEEecChHHH
Q psy2519 242 KIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~ 260 (622)
+++++++|+++..|+++++
T Consensus 336 ~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 336 LTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp EEEEEETTEEEECCCTTTS
T ss_pred EEEEEECCEEEecCCHHHH
Confidence 9999999999999998765
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.73 E-value=6.1e-22 Score=196.20 Aligned_cols=177 Identities=8% Similarity=-0.004 Sum_probs=116.0
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----cccccEEEE
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----KFRSACGFM 107 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~~r~~igyV 107 (622)
.-|+++|+++ .+|+.++++|+| |||||||+++|+|+. | |+|.+ |.+++. ..++.++|+
T Consensus 11 ~~l~~isl~i-----~~G~~~~lvGps-----GsGKSTLl~~L~g~~-p-----G~i~~-g~~~~~~~~~~~~~~~i~~~ 73 (218)
T 1z6g_A 11 SSGLVPRGSM-----NNIYPLVICGPS-----GVGKGTLIKKLLNEF-P-----NYFYF-SVSCTTRKKREKEKEGVDYY 73 (218)
T ss_dssp ----------------CCCCEEEECST-----TSSHHHHHHHHHHHS-T-----TTEEE-CCCEECSCCCSSCCBTTTBE
T ss_pred ccccCCceec-----CCCCEEEEECCC-----CCCHHHHHHHHHhhC-C-----CcEEE-eecccCCCCCcccccCCeEE
Confidence 3588999998 567777788776 899999999999987 4 78888 776532 245789999
Q ss_pred ecCCCCCCCCCH-HHHHH---HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH-
Q psy2519 108 YQHDLFSPSLTV-YEHLY---FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF- 182 (622)
Q Consensus 108 ~Q~~~l~~~lTV-~E~l~---f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI- 182 (622)
+|++.+++.++. .+++. +....+ ..+. +.++++++...+. ..+ .+ +|||||||++|
T Consensus 74 ~~~~~~~~~~~~~~~~l~~~~~~~~~~---g~~~----~~i~~~l~~~~~~-il~---~~--------lsggq~qR~~i~ 134 (218)
T 1z6g_A 74 FIDKTIFEDKLKNEDFLEYDNYANNFY---GTLK----SEYDKAKEQNKIC-LFE---MN--------INGVKQLKKSTH 134 (218)
T ss_dssp ECCHHHHHHHHHTTCEEEEEEETTEEE---EEEH----HHHHHHHHTTCEE-EEE---EC--------HHHHHHHTTCSS
T ss_pred ECCHHHHHHhhhccchhhhhhcccccC---CCcH----HHHHHHHhCCCcE-EEE---ec--------HHHHHHHHHHhc
Confidence 998876665431 11211 111111 1122 2355666653321 111 12 99999999999
Q ss_pred ----HHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc------CCCEEEEEeccCcHHHHhhccceeee
Q psy2519 183 ----ATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ------RKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 183 ----A~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~------~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
+++++.+|++++|||||+++|..+...+.+.+++..++ .+.+.|+++|++ +++.+.+|+++.-
T Consensus 135 ~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~-~ea~~~~~~ii~~ 207 (218)
T 1z6g_A 135 IKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDL-TLTYQQLKNYLLN 207 (218)
T ss_dssp CCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSH-HHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCH-HHHHHHHHHHHHH
Confidence 89999999999999999999999999999998887653 356677777774 5666677766543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=5e-19 Score=209.96 Aligned_cols=180 Identities=14% Similarity=0.076 Sum_probs=118.5
Q ss_pred CCcccCC-----ccccccccceeeeEeeeeEEEEc--ccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeE
Q psy2519 16 NNEEVPN-----VDFSEIVGSVQVYAIVNLLVIMD--QTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGD 88 (622)
Q Consensus 16 ~~~~~~~-----~~~~~~~g~~~~l~~v~l~~~~~--~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~ 88 (622)
..++++| |++.|. |+..+++++++.+.-+ ....|+.++|+|+| |||||||||++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~-~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpN-----gsGKSTlLr~i-Gl~~~------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFF-GDDFIPNDILIGCEEEEQENGKAYCVLVTGPN-----MGGKSTLMRQA-GLLAV------- 814 (1022)
T ss_dssp CCEEEEEECCCC-------CCCCCCEEEEESCCCSCC---CCCEEEEECCT-----TSSHHHHHHHH-HHHHH-------
T ss_pred ceEEEEeccccEEEEEec-CCceEeeeeeeccccccccCCCCcEEEEECCC-----CCChHHHHHHH-HHHHH-------
Confidence 4578888 888762 5667899999876100 00114566666666 89999999999 88753
Q ss_pred EEECCEecCccccccEE-EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 89 IRVNGKPVEGKFRSACG-FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 89 I~~~G~~~~~~~r~~ig-yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
..++| ||||+.. .+||.|++.. .+|+.+.......+
T Consensus 815 ------------~aqiG~~Vpq~~~---~l~v~d~I~~------------------------rig~~d~~~~~~st---- 851 (1022)
T 2o8b_B 815 ------------MAQMGCYVPAEVC---RLTPIDRVFT------------------------RLGASDRIMSGEST---- 851 (1022)
T ss_dssp ------------HHTTTCCEESSEE---EECCCSBEEE------------------------ECC---------CH----
T ss_pred ------------HhheeEEeccCcC---CCCHHHHHHH------------------------HcCCHHHHhhchhh----
Confidence 12455 9999763 4566665411 11222212222233
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH-HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~-~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
+|+++++ +++|++++++|+++||||||+|+|+... ..+++++++++++.|.++|++||++ +.+...+|++.++
T Consensus 852 ----f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~-el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 852 ----FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYH-SLVEDYSQNVAVR 925 (1022)
T ss_dssp ----HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCH-HHHHHTSSCSSEE
T ss_pred ----hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCH-HHHHHhCCcceee
Confidence 8887775 9999999999999999999999999985 5578999999874499999999995 6777789999887
Q ss_pred cCCceE--EecChHH
Q psy2519 247 ADSRTA--FIGSKDA 259 (622)
Q Consensus 247 ~~G~iv--~~G~~~~ 259 (622)
+|++. +.|++++
T Consensus 926 -~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 926 -LGHMACMVENECED 939 (1022)
T ss_dssp -EEEEEEC-------
T ss_pred -cCeEEEEEecCccc
Confidence 58887 5565543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=3.2e-20 Score=207.30 Aligned_cols=180 Identities=11% Similarity=0.020 Sum_probs=123.2
Q ss_pred cccCCccccccccceeeeEeeee-EEEEcccCCCcceEEEecCCcCCCCCChHHHHHH--HhCCCCCCCceeeEEEECCE
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNL-LVIMDQTASTSKTVILFKNNEEVPNVDFSELIRL--FLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l-~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~--l~g~~~~~~~~~G~I~~~G~ 94 (622)
.+.+++.+. .+++++|+++++ .+ .+|+.++++|+| |||||||+++ ++|+.+|+ +|.|+++|+
T Consensus 13 ~~~~~~~~~--~~g~~~Ld~i~~G~i-----~~Ge~~~l~G~n-----GsGKSTL~~~~ll~Gl~~~~---~g~i~v~g~ 77 (525)
T 1tf7_A 13 SEHQAIAKM--RTMIEGFDDISHGGL-----PIGRSTLVSGTS-----GTGKTLFSIQFLYNGIIEFD---EPGVFVTFE 77 (525)
T ss_dssp -CCSSCCEE--CCCCTTHHHHTTSSE-----ETTSEEEEEEST-----TSSHHHHHHHHHHHHHHHHC---CCEEEEESS
T ss_pred ccccccccc--cCCchhHHHhcCCCC-----CCCeEEEEEcCC-----CCCHHHHHHHHHHHHHHhCC---CCEEEEEEe
Confidence 445556553 356789999999 88 567777777776 8999999999 78999874 899999998
Q ss_pred ecCc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccc
Q psy2519 95 PVEG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVV 171 (622)
Q Consensus 95 ~~~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~g 171 (622)
+... ..++.+||++|+....+. +.+ ..... . ++..++++.++|.+..++.+..
T Consensus 78 ~~~~~~~~~~~~~g~~~q~~~~~~~------l~~---~~~~~--~-----~~~~~~l~~~~l~~~~~~~~~~-------- 133 (525)
T 1tf7_A 78 ETPQDIIKNARSFGWDLAKLVDEGK------LFI---LDASP--D-----PEGQEVVGGFDLSALIERINYA-------- 133 (525)
T ss_dssp SCHHHHHHHHGGGTCCHHHHHHTTS------EEE---EECCC--C-----SSCCSCCSSHHHHHHHHHHHHH--------
T ss_pred CCHHHHHHHHHHcCCChHHhhccCc------EEE---EecCc--c-----cchhhhhcccCHHHHHHHHHHH--------
Confidence 8533 245678999997542211 100 00000 0 0001122233333333333333
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH--------HHh
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE--------LID 238 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs-----gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~--------i~~ 238 (622)
|||| +|+++++||||+ +||+..+.++.++++++++ .|+|||+++|++... +..
T Consensus 134 LS~g-------------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~-~g~tvl~itH~~~~~~~~~~~~i~~~ 199 (525)
T 1tf7_A 134 IQKY-------------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQ-IGATTVMTTERIEEYGPIARYGVEEF 199 (525)
T ss_dssp HHHH-------------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHH-HTCEEEEEEECSSSSSCSSTTSCHHH
T ss_pred HHHc-------------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHH-CCCEEEEEecCCCCccccccccceee
Confidence 5555 588999999998 5699999999999999987 699999999997432 355
Q ss_pred hccceeeecCCc
Q psy2519 239 MFDKIILLADSR 250 (622)
Q Consensus 239 ~~D~v~~L~~G~ 250 (622)
+||+|++|++|+
T Consensus 200 laD~vi~L~~~~ 211 (525)
T 1tf7_A 200 VSDNVVILRNVL 211 (525)
T ss_dssp HCSEEEEEEEEC
T ss_pred eeeEEEEEEEEc
Confidence 699999999843
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-18 Score=173.91 Aligned_cols=179 Identities=10% Similarity=0.026 Sum_probs=107.9
Q ss_pred ccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEe
Q psy2519 29 VGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMY 108 (622)
Q Consensus 29 ~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~ 108 (622)
.|+.++|+++|+++ .++..+.|.|+| |||||||+++|+|++ |.+.++ ..++.++|++
T Consensus 9 ~~~~~~l~~isl~i-----~~g~iigI~G~~-----GsGKSTl~k~L~~~l-------G~~~~~------~~~~~i~~v~ 65 (245)
T 2jeo_A 9 SGVDLGTENLYFQS-----MRPFLIGVSGGT-----ASGKSTVCEKIMELL-------GQNEVE------QRQRKVVILS 65 (245)
T ss_dssp -------------------CCSEEEEEECST-----TSSHHHHHHHHHHHH-------TGGGSC------GGGCSEEEEE
T ss_pred CCCceeecceeccC-----CCCEEEEEECCC-----CCCHHHHHHHHHHHh-------chhccc------ccCCceEEEe
Confidence 47788999999998 556667777666 899999999999965 222232 2467899999
Q ss_pred cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh
Q psy2519 109 QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188 (622)
Q Consensus 109 Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~ 188 (622)
|++ +++.+|+.|++.+......... +.....+.+.+.++.+ .+..+..+.. +|+||+||+++ ++++.
T Consensus 66 ~d~-~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~~~~~~~~--------ls~g~~~r~~~-~~~~~ 132 (245)
T 2jeo_A 66 QDR-FYKVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEGKTVEVPT--------YDFVTHSRLPE-TTVVY 132 (245)
T ss_dssp GGG-GBCCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTTCCEEECC--------EETTTTEECSS-CEEEC
T ss_pred CCc-CccccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCCCCeeccc--------ccccccCccCc-eEEec
Confidence 985 7888999999987643321110 1111122344555543 3445555555 99999999988 58888
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHh-hccceeeecCCceEEecChHHHHHH
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELID-MFDKIILLADSRTAFIGSKDAALAF 263 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~-~~D~v~~L~~G~iv~~G~~~~~~~~ 263 (622)
+|+++++|||....|.. +.++ .+.+|++++|+. ..+.+ +++++ ++|+ +.+++.+.
T Consensus 133 ~~~~lilDg~~~~~~~~--------l~~~---~~~~i~v~th~~-~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 133 PADVVLFEGILVFYSQE--------IRDM---FHLRLFVDTDSD-VRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp CCSEEEEECTTTTTSHH--------HHTT---CSEEEEEECCHH-HHHHHHHHHHT---C--------CHHHHHHH
T ss_pred CCCEEEEeCccccccHH--------HHHh---cCeEEEEECCHH-HHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 99999999998888863 2222 378999999973 34433 34444 6665 45666543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.7e-17 Score=183.56 Aligned_cols=152 Identities=14% Similarity=0.057 Sum_probs=113.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.+|+.+.+.|+| |||||||++.++|...+ +|+ +.+.+++|++. .++.++. .
T Consensus 279 ~~G~i~~i~G~~-----GsGKSTLl~~l~g~~~~----~G~-------------~vi~~~~ee~~----~~l~~~~---~ 329 (525)
T 1tf7_A 279 FKDSIILATGAT-----GTGKTLLVSRFVENACA----NKE-------------RAILFAYEESR----AQLLRNA---Y 329 (525)
T ss_dssp ESSCEEEEEECT-----TSSHHHHHHHHHHHHHT----TTC-------------CEEEEESSSCH----HHHHHHH---H
T ss_pred CCCcEEEEEeCC-----CCCHHHHHHHHHHHHHh----CCC-------------CEEEEEEeCCH----HHHHHHH---H
Confidence 355566666665 89999999999998876 232 12456677641 1223222 1
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH--
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF-- 205 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~-- 205 (622)
++. .+. ++ +...|+.+..+..+.+ |||||+||+.+|+++..+|++|++| ||+|||+.
T Consensus 330 ~~g----~~~-------~~-~~~~g~~~~~~~~p~~--------LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~ 388 (525)
T 1tf7_A 330 SWG----MDF-------EE-MERQNLLKIVCAYPES--------AGLEDHLQIIKSEINDFKPARIAID-SLSALARGVS 388 (525)
T ss_dssp TTS----CCH-------HH-HHHTTSEEECCCCGGG--------SCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC
T ss_pred HcC----CCH-------HH-HHhCCCEEEEEecccc--------CCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC
Confidence 111 111 12 2346666666666544 9999999999999999999999999 99999999
Q ss_pred ---HHHHHHHHHHHHHhcCCCEEEEEeccCc---------HHHHhhccceeeecCCc
Q psy2519 206 ---SASKLIRMMRELTSQRKKTVLCTIHQPS---------SELIDMFDKIILLADSR 250 (622)
Q Consensus 206 ---~~~~i~~~l~~l~~~~g~tvi~~tH~~~---------~~i~~~~D~v~~L~~G~ 250 (622)
.+..+.++++.+++ .|.|||+++|+.. ..+..+||+|++|++|+
T Consensus 389 ~~~~~~~i~~ll~~l~~-~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 389 NNAFRQFVIGVTGYAKQ-EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHH-TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHh-CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999987 7999999999961 46778999999999886
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.1e-18 Score=181.22 Aligned_cols=164 Identities=12% Similarity=0.045 Sum_probs=86.6
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC-CCCCCceeeEEEECCEecCcc
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ-VIDDCIIDGDIRVNGKPVEGK 99 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~-~~~~~~~~G~I~~~G~~~~~~ 99 (622)
+||++.| |+..+++++++++ +++|+| |||||||++.|.|. ..| .+| |.++|.++...
T Consensus 2 ~~l~~~~--~~~~~l~~~~~~I-----------~lvG~n-----G~GKSTLl~~L~g~~~~~---~~g-i~~~g~~~~~t 59 (301)
T 2qnr_A 2 SNLPNQV--HRKSVKKGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLYP---ERV-ISGAAEKIERT 59 (301)
T ss_dssp ------------------CEEE-----------EEEEET-----TSSHHHHHHHHHC-----------------------
T ss_pred CCCcceE--CCEEEEcCCCEEE-----------EEECCC-----CCCHHHHHHHHhCCCccC---CCC-cccCCcccCCc
Confidence 4778875 7888999998876 677776 89999999999997 666 478 88888876542
Q ss_pred -ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 100 -FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 100 -~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
-.+.+++++|++.+...+||.|+..++..... .+..+..++.+. +..+.++.+ +||||||
T Consensus 60 ~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~-----~e~~~~l~~~l~------~~~~~~~~~--------~sgg~rq 120 (301)
T 2qnr_A 60 VQIEASTVEIEERGVKLRLTVVDTPGYGDAINC-----RDCFKTIISYID------EQFERYLHD--------ESGLNRR 120 (301)
T ss_dssp -----CEEEEC---CCEEEEEEEEC----------------CTTHHHHHH------HHHHHHHHH--------HTSSCCT
T ss_pred ceEeeEEEEecCCCcccCcchhhhhhhhhhcCc-----HHHHHHHHHHHH------HHHHHHHHH--------hCHHhhh
Confidence 23568999999888889999999888643210 000011112211 223445444 9999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 179 RLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
|+.+||+++ ++++||||+ |||+... +.++++.++.+.++|++.||..
T Consensus 121 rv~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 121 HIIDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp TCCCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 999998885 999999998 5999873 6677776545889999999963
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-17 Score=169.49 Aligned_cols=142 Identities=16% Similarity=0.175 Sum_probs=103.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCce-eeEEEECCEe
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCII-DGDIRVNGKP 95 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~-~G~I~~~G~~ 95 (622)
.++++++++. ++|++++ + .+|+.++++|+| |||||||+++|+|+.+| . +|+|.++|.+
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i-----~~g~~v~i~Gp~-----GsGKSTll~~l~g~~~~---~~~G~I~~~g~~ 63 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--H-----RKMGLILVTGPT-----GSGKSTTIASMIDYINQ---TKSYHIITIEDP 63 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--G-----CSSEEEEEECST-----TCSHHHHHHHHHHHHHH---HCCCEEEEEESS
T ss_pred CCChHHCCCH------HHHHHHh--h-----CCCCEEEEECCC-----CccHHHHHHHHHHhCCC---CCCCEEEEcCCc
Confidence 4678888874 4788887 4 467777777776 89999999999999887 4 7999999877
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
+....+..+++++|. .+|+.. .+ +
T Consensus 64 i~~~~~~~~~~v~q~---------------------------------------~~gl~~------~~--------l--- 87 (261)
T 2eyu_A 64 IEYVFKHKKSIVNQR---------------------------------------EVGEDT------KS--------F--- 87 (261)
T ss_dssp CCSCCCCSSSEEEEE---------------------------------------EBTTTB------SC--------H---
T ss_pred ceeecCCcceeeeHH---------------------------------------HhCCCH------HH--------H---
Confidence 532111112222221 122211 11 4
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|++||++|..+|+++++|||| |+.+...++ +. ++ .|.+|++++|+.. +.+.+||++.|..
T Consensus 88 ---~~~la~aL~~~p~illlDEp~---D~~~~~~~l---~~-~~-~g~~vl~t~H~~~--~~~~~dri~~l~~ 147 (261)
T 2eyu_A 88 ---ADALRAALREDPDVIFVGEMR---DLETVETAL---RA-AE-TGHLVFGTLHTNT--AIDTIHRIVDIFP 147 (261)
T ss_dssp ---HHHHHHHHHHCCSEEEESCCC---SHHHHHHHH---HH-HH-TTCEEEEEECCSS--HHHHHHHHHHTSC
T ss_pred ---HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHH---HH-Hc-cCCEEEEEeCcch--HHHHHHHHhhhcC
Confidence 899999999999999999999 998866544 33 34 6999999999963 6688999999864
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-17 Score=193.80 Aligned_cols=87 Identities=16% Similarity=0.192 Sum_probs=76.6
Q ss_pred cChHHHHHHHHHHHH--hhCCCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 172 LSGGERKRLSFATEL--LTDPALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 172 LSgGqrqRvsIA~aL--~~~P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
+|+|++++..+|++| +++|+++||||||+|||+.....+ ..+++.++++.|.|+|++||+. ++.+++|++..+.+
T Consensus 722 lStf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~--el~~lad~~~~v~n 799 (934)
T 3thx_A 722 VSTFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFH--ELTALANQIPTVNN 799 (934)
T ss_dssp -CHHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCG--GGGGGGGTCTTEEE
T ss_pred HhhhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcH--HHHHHhcccceeEe
Confidence 888888888888888 999999999999999999999888 7788888864599999999995 56789999999999
Q ss_pred CceEEecChHHH
Q psy2519 249 SRTAFIGSKDAA 260 (622)
Q Consensus 249 G~iv~~G~~~~~ 260 (622)
|++...++.+++
T Consensus 800 g~v~~~~~~~~l 811 (934)
T 3thx_A 800 LHVTALTTEETL 811 (934)
T ss_dssp EEEEEEEETTEE
T ss_pred eEEEEEecCCcE
Confidence 999998877654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-17 Score=172.26 Aligned_cols=148 Identities=9% Similarity=0.034 Sum_probs=108.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-----c-----ccccEEEEecCCCCCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-----K-----FRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-----~-----~r~~igyV~Q~~~l~~~lT 118 (622)
+++.+.++|+| |||||||++.|+|+.+| .+|+|.++|.++.+ + .++.++||+|++.+.|.+|
T Consensus 101 ~g~vi~lvG~n-----GsGKTTll~~Lagll~~---~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~ 172 (304)
T 1rj9_A 101 KGRVVLVVGVN-----GVGKTTTIAKLGRYYQN---LGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAAL 172 (304)
T ss_dssp SSSEEEEECST-----TSSHHHHHHHHHHHHHT---TTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHH
T ss_pred CCeEEEEECCC-----CCcHHHHHHHHHHHHHh---cCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHH
Confidence 45566666665 89999999999999998 48999999998743 1 1456999999999999999
Q ss_pred HHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCC
Q psy2519 119 VYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198 (622)
Q Consensus 119 V~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEP 198 (622)
|+|++.++..... . ..+++..|+.+..+.. ++..++||++|||+|+.+|+.++|
T Consensus 173 v~~~v~~~~~~~~----d--------~~llDt~G~~~~~~~~-----------~~eLs~~r~~iaRal~~~P~~~lL--- 226 (304)
T 1rj9_A 173 AYDAVQAMKARGY----D--------LLFVDTAGRLHTKHNL-----------MEELKKVKRAIAKADPEEPKEVWL--- 226 (304)
T ss_dssp HHHHHHHHHHHTC----S--------EEEECCCCCCTTCHHH-----------HHHHHHHHHHHHHHCTTCCSEEEE---
T ss_pred HHHHHHHHHhCCC----C--------EEEecCCCCCCchHHH-----------HHHHHHHHHHHHHhhcCCCCeEEE---
Confidence 9999987532110 0 0122334443322222 455569999999999999995554
Q ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 199 TsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.||+.+..++++.+++++++.|.|+|++||+.
T Consensus 227 --vLDa~t~~~~~~~~~~~~~~~~~t~iivTh~d 258 (304)
T 1rj9_A 227 --VLDAVTGQNGLEQAKKFHEAVGLTGVIVTKLD 258 (304)
T ss_dssp --EEETTBCTHHHHHHHHHHHHHCCSEEEEECTT
T ss_pred --EEcHHHHHHHHHHHHHHHHHcCCcEEEEECCc
Confidence 56666666777888888765699999999984
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-18 Score=196.55 Aligned_cols=193 Identities=12% Similarity=0.102 Sum_probs=118.1
Q ss_pred CcccCCccccccccceeeeEeee----------eEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVN----------LLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~----------l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
.++++||++.|.....++++.++ +++ ..++++|+| ||||||||++|+|+..|. .+
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~l--------p~iaIvG~n-----GsGKSTLL~~I~Gl~~P~--~s 74 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLAL--------PAIAVIGDQ-----SSGKSSVLEALSGVALPR--GS 74 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCC--------CCEECCCCT-----TSCHHHHHHHHHSCC-------
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccC--------CeEEEECCC-----CChHHHHHHHHhCCCCCC--CC
Confidence 35788999987432234544443 222 247777776 899999999999998772 38
Q ss_pred eEEEECCEecC-------ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC
Q psy2519 87 GDIRVNGKPVE-------GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT 159 (622)
Q Consensus 87 G~I~~~G~~~~-------~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~ 159 (622)
|+|+++|.++. ..+++.+||++|+..+++.+||+||+.+........ .-++. +
T Consensus 75 G~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~~~~----------------~~~~s---~- 134 (608)
T 3szr_A 75 GIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAIAGE----------------GMGIS---H- 134 (608)
T ss_dssp --CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHHHCS----------------SSCCC---S-
T ss_pred CeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHhcCC----------------ccccc---h-
Confidence 99999999862 146789999999999999999999998864321000 00111 1
Q ss_pred ccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCC------CCCCCHHHHHHHHHHHHHHH-hcCCCEEEEEeccC
Q psy2519 160 RIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP------TTGLDSFSASKLIRMMRELT-SQRKKTVLCTIHQP 232 (622)
Q Consensus 160 ~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEP------TsgLD~~~~~~i~~~l~~l~-~~~g~tvi~~tH~~ 232 (622)
+++.++.+...+|+++++||| |+|||+..+.++.++++++. +..+.++++++|+.
T Consensus 135 ------------------~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~ 196 (608)
T 3szr_A 135 ------------------ELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNV 196 (608)
T ss_dssp ------------------CCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSS
T ss_pred ------------------HHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccc
Confidence 111122222358999999999 99999999999999999964 33478899999986
Q ss_pred cH---HHHhhc--------cceeeecCCceEEecChHHHHH
Q psy2519 233 SS---ELIDMF--------DKIILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 233 ~~---~i~~~~--------D~v~~L~~G~iv~~G~~~~~~~ 262 (622)
.. ++.+++ ..|+++.++.++..|+.+++.+
T Consensus 197 d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~~g~~~~~~~ 237 (608)
T 3szr_A 197 DIATTEALSMAQEVDPEGDRTIGILTKPDLVDKGTEDKVVD 237 (608)
T ss_dssp CTTTCHHHHHHHHHCSSCCSEEEEEECGGGSSSSSTTCCCC
T ss_pred hhccHHHHHHHHHHhhcCCceEEEecchhhcCcccHHHHHH
Confidence 31 122222 3478889999998887765543
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-18 Score=171.05 Aligned_cols=145 Identities=12% Similarity=0.053 Sum_probs=112.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC--CCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS--PSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~--~~lTV~E~l~f 125 (622)
++++.+.++|+| |||||||+++|+|++.| .++|++|++.++ +.+|++++..+
T Consensus 4 ~~~~~i~i~G~~-----GsGKSTl~~~l~~~~~~---------------------~i~~v~~d~~~~~~~~~~~~~~~~~ 57 (211)
T 3asz_A 4 PKPFVIGIAGGT-----ASGKTTLAQALARTLGE---------------------RVALLPMDHYYKDLGHLPLEERLRV 57 (211)
T ss_dssp -CCEEEEEEEST-----TSSHHHHHHHHHHHHGG---------------------GEEEEEGGGCBCCCTTSCHHHHHHS
T ss_pred CCcEEEEEECCC-----CCCHHHHHHHHHHHhCC---------------------CeEEEecCccccCcccccHHHhcCC
Confidence 455667777776 89999999999997643 489999998776 67899998655
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH----HHHHHHHHHhhCCCeEEEeCCCCC
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER----KRLSFATELLTDPALLLCDEPTTG 201 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr----qRvsIA~aL~~~P~lLlLDEPTsg 201 (622)
.. ..+... ..+++.+.++.+++.+..+.++.+ +|+||| ||+++|++++.+|.++++||||++
T Consensus 58 ~~--~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~--------~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~ 123 (211)
T 3asz_A 58 NY--DHPDAF----DLALYLEHAQALLRGLPVEMPVYD--------FRAYTRSPRRTPVRPAPVVILEGILVLYPKELRD 123 (211)
T ss_dssp CT--TSGGGB----CHHHHHHHHHHHHTTCCEEECCEE--------TTTTEECSSCEEECCCSEEEEESTTTTSSHHHHT
T ss_pred CC--CChhhh----hHHHHHHHHHHHHcCCCcCCCccc--------CcccCCCCCeEEeCCCcEEEEeehhhccCHHHHH
Confidence 32 111111 234566788888887766665544 999964 788999999999999999999999
Q ss_pred -------CCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 202 -------LDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 202 -------LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
||+.....+.+.+++..++.|.|++.++|+.
T Consensus 124 ~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 124 LMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp TCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred hcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999999887554799999999974
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.61 E-value=2.2e-17 Score=193.15 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=67.4
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhccceee-ecCC
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADS 249 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~-L~~G 249 (622)
+|+||+|++.|+++ +.+|+++||||||+|||+.....+. .+++.++++.|.|+|++||++ ++.+++|+.-- +.++
T Consensus 736 fs~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~--el~~l~~~~~~~v~n~ 812 (918)
T 3thx_B 736 FMEELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYP--PVCELEKNYSHQVGNY 812 (918)
T ss_dssp HHHHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHTTTTEEEE
T ss_pred hhHHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcH--HHHHHHhhcccceEEE
Confidence 99999999999999 8999999999999999999999997 888888765699999999995 55678887642 4555
Q ss_pred ceEE
Q psy2519 250 RTAF 253 (622)
Q Consensus 250 ~iv~ 253 (622)
++.+
T Consensus 813 ~~~~ 816 (918)
T 3thx_B 813 HMGF 816 (918)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-16 Score=157.44 Aligned_cols=152 Identities=14% Similarity=0.096 Sum_probs=94.8
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC----ceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC----IIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~----~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.+.++|+| |||||||+++|+|...+.. ...|.+++++++.. .++.+++++|+..+.+. |+.||+
T Consensus 23 ~~G~~~~l~G~n-----GsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~~--~~~~i~~~~~~~~~~~~-~~~~~~ 94 (231)
T 4a74_A 23 ETQAITEVFGEF-----GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHI 94 (231)
T ss_dssp ESSEEEEEEEST-----TSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCC--CHHHHHHHHHHTTSCHH-HHHHTE
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCCC--CHHHHHHHHHHcCCCHH-HHhhcE
Confidence 356777777776 8999999999999554310 12446777665421 12234445554444333 444443
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH-HHHHHHHHHHhh-------CCCeEEE
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE-RKRLSFATELLT-------DPALLLC 195 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq-rqRvsIA~aL~~-------~P~lLlL 195 (622)
.+.. . .++++ ++++..+.+++. +|+++++
T Consensus 95 ~~~~-----------------------------------~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~llil 131 (231)
T 4a74_A 95 YVAR-----------------------------------A--------FNSNHQMLLVQQAEDKIKELLNTDRPVKLLIV 131 (231)
T ss_dssp EEEE-----------------------------------C--------CSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEE
T ss_pred EEEe-----------------------------------c--------CChHHHHHHHHHHHHHHHHhcccCCceeEEEE
Confidence 2210 0 23332 222444455544 8999999
Q ss_pred eCCCCCCCHHH------------HHHHHHHHHHHHhcCCCEEEEEeccCc---HHHHhhccceeeecCCc
Q psy2519 196 DEPTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPS---SELIDMFDKIILLADSR 250 (622)
Q Consensus 196 DEPTsgLD~~~------------~~~i~~~l~~l~~~~g~tvi~~tH~~~---~~i~~~~D~v~~L~~G~ 250 (622)
||||+++|+.. ..++++.|++++++.|+|||+++|+.. ..+.+.+|++++|++|+
T Consensus 132 De~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 132 DSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp ETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred CChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99999999842 347888899988767999999999532 24788899999998764
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.6e-15 Score=141.98 Aligned_cols=77 Identities=21% Similarity=0.315 Sum_probs=67.0
Q ss_pred cccChHHHHHHHHHHHHhhC----CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATELLTD----PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~----P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..||||||||++||++|+.+ |++++|||||+|||+.++..+.+.|+++++ +.++|++||+. ...+.||+++.
T Consensus 63 ~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~--~~~~ivith~~--~~~~~ad~i~~ 138 (173)
T 3kta_B 63 EAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSK--ESQFIVITLRD--VMMANADKIIG 138 (173)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSCH--HHHTTCSEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhcc--CCEEEEEEecH--HHHHhCCEEEE
Confidence 34999999999999999854 699999999999999999999999999975 46899999984 56789999986
Q ss_pred ec--CCc
Q psy2519 246 LA--DSR 250 (622)
Q Consensus 246 L~--~G~ 250 (622)
+. +|.
T Consensus 139 v~~~~g~ 145 (173)
T 3kta_B 139 VSMRDGV 145 (173)
T ss_dssp EEEETTE
T ss_pred EEecCCE
Confidence 64 554
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.56 E-value=4.8e-16 Score=179.33 Aligned_cols=162 Identities=16% Similarity=0.059 Sum_probs=109.6
Q ss_pred cCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC-CCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI-DDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~~~~~~G~I~~~ 92 (622)
++.+++++...-... ++..++++++++ |+.++|+|+| |||||||||+|+|+.. + ..|.+.
T Consensus 548 ~~~i~i~~~rHP~le~~~~~vl~disl~--------g~i~~I~GpN-----GsGKSTlLr~iagl~~~~---~~G~~v-- 609 (765)
T 1ewq_A 548 GDRLQIRAGRHPVVERRTEFVPNDLEMA--------HELVLITGPN-----MAGKSTFLRQTALIALLA---QVGSFV-- 609 (765)
T ss_dssp SSSEEEEEECCTTGGGTSCCCCEEEEES--------SCEEEEESCS-----SSSHHHHHHHHHHHHHHH---TTTCCB--
T ss_pred CCcEEEEEeECceEccCCceEeeeccCC--------CcEEEEECCC-----CCChHHHHHHHHhhhhhc---ccCcee--
Confidence 445555555443211 456678888764 5566677776 8999999999999864 3 245432
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL 172 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL 172 (622)
. ..+..+|+++| +++.+++.||+.. |+
T Consensus 610 ----p-a~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------------g~ 636 (765)
T 1ewq_A 610 ----P-AEEAHLPLFDG---IYTRIGASDDLAG---------------------------------------------GK 636 (765)
T ss_dssp ----S-SSEEEECCCSE---EEEECCC---------------------------------------------------CC
T ss_pred ----e-hhccceeeHHH---hhccCCHHHHHHh---------------------------------------------cc
Confidence 1 12346788776 4555666554311 28
Q ss_pred ChHHHHHHHHHHHH--hhCCCeEEEeCC---CCCCCHHHH-HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 173 SGGERKRLSFATEL--LTDPALLLCDEP---TTGLDSFSA-SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 173 SgGqrqRvsIA~aL--~~~P~lLlLDEP---TsgLD~~~~-~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|+||++++.+|+++ +++|+++||||| |++||+.+. ..+.+.|++ .|.|+|++||++ +..+++ .--+
T Consensus 637 S~~~~e~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~----~g~~vl~~TH~~--~l~~~~--~~~v 708 (765)
T 1ewq_A 637 STFMVEMEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE----RRAYTLFATHYF--ELTALG--LPRL 708 (765)
T ss_dssp SHHHHHHHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH----HTCEEEEECCCH--HHHTCC--CTTE
T ss_pred cHHHHHHHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh----CCCEEEEEeCCH--HHHHhh--hhcc
Confidence 99999999999999 999999999999 999999875 467777765 478999999995 455555 2233
Q ss_pred cCCceEEec
Q psy2519 247 ADSRTAFIG 255 (622)
Q Consensus 247 ~~G~iv~~G 255 (622)
.++++....
T Consensus 709 ~n~~~~~~~ 717 (765)
T 1ewq_A 709 KNLHVAARE 717 (765)
T ss_dssp EEEEEEEEC
T ss_pred eEEEEEEEE
Confidence 455555443
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=4e-15 Score=165.70 Aligned_cols=77 Identities=18% Similarity=0.254 Sum_probs=69.9
Q ss_pred cccc-ChHHHHHHHHHHHHhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 169 KVVL-SGGERKRLSFATELLTDP--ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 169 ~~gL-SgGqrqRvsIA~aL~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
+..| ||||||||+||++|+.+| ++|||||||+|||+.++..+.+.|+++++ |.|||+|||++ . +...||++++
T Consensus 394 ~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~~~vi~itH~~-~-~~~~~d~~~~ 469 (517)
T 4ad8_A 394 LSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--TRQVLVVTHLA-Q-IAARAHHHYK 469 (517)
T ss_dssp SSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--HSEEEEECCCH-H-HHHHSSEEEE
T ss_pred HHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--CCEEEEEecCH-H-HHHhCCEEEE
Confidence 3447 999999999999999999 99999999999999999999999999985 79999999996 3 4567999999
Q ss_pred ecCC
Q psy2519 246 LADS 249 (622)
Q Consensus 246 L~~G 249 (622)
|++|
T Consensus 470 ~~~~ 473 (517)
T 4ad8_A 470 VEKQ 473 (517)
T ss_dssp EECC
T ss_pred Eecc
Confidence 9654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.53 E-value=7.7e-17 Score=155.92 Aligned_cols=156 Identities=15% Similarity=0.094 Sum_probs=102.7
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
|+.+.++|+| |||||||+++|+|+++ + +| |.++|.+... ..++.+||++|+. ... ++++ +
T Consensus 1 G~~i~i~G~n-----G~GKTTll~~l~g~~~-~---~G-i~~~g~~~~~~~~~~~~ig~~~~~~--~g~---~~~l---~ 62 (189)
T 2i3b_A 1 ARHVFLTGPP-----GVGKTTLIHKASEVLK-S---SG-VPVDGFYTEEVRQGGRRIGFDVVTL--SGT---RGPL---S 62 (189)
T ss_dssp CCCEEEESCC-----SSCHHHHHHHHHHHHH-H---TT-CCCEEEECCEEETTSSEEEEEEEET--TSC---EEEE---E
T ss_pred CCEEEEECCC-----CChHHHHHHHHHhhcc-c---CC-EEEcCEecchhHhhhceEEEEEEec--ccc---eehh---h
Confidence 3456777776 8999999999999987 3 68 9999987754 4678899999974 111 1111 0
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHH-HHHH---HHhhCCCeEEEeC--CCC
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRL-SFAT---ELLTDPALLLCDE--PTT 200 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRv-sIA~---aL~~~P~lLlLDE--PTs 200 (622)
++.. +..+ ..+..++. ....+|+|||+++ ++++ |++.+|+++|+|| ||.
T Consensus 63 ~~~~--------------------~~~~~~~~~~v~~----~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~ 118 (189)
T 2i3b_A 63 RVGL--------------------EPPPGKRECRVGQ----YVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKME 118 (189)
T ss_dssp ECCC--------------------CCCSSSCCEESSS----SEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTT
T ss_pred cccc--------------------cCCccccccccce----EEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccc
Confidence 1110 0011 01113332 1234999999988 4454 6799999999999 899
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEE----EeccCcHHHHhhccceeeecCCceEEec
Q psy2519 201 GLDSFSASKLIRMMRELTSQRKKTVLC----TIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 201 gLD~~~~~~i~~~l~~l~~~~g~tvi~----~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
.+|+.....+. ++.+ ...++|+ ++|+.+ ..+.|+|..+.+|+++...
T Consensus 119 ~~~~~~~~~l~----~~l~-~~~~~ilgti~vsh~~~---~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 119 LFSQLFIQAVR----QTLS-TPGTIILGTIPVPKGKP---LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp TTCSHHHHHHH----HHHH-CSSCCEEEECCCCCSSC---CTTHHHHHTTCCSEEEECC
T ss_pred cccHHHHHHHH----HHHh-CCCcEEEEEeecCCCCc---hHHHHHHeecCCcEEEEeC
Confidence 99987554444 4444 2344553 338852 3577899888999998744
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.52 E-value=1.9e-14 Score=147.28 Aligned_cols=149 Identities=10% Similarity=0.002 Sum_probs=102.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.+|+.+.+.|+| |||||||++.+++... .|++. .|.+... +..+.|+..++.. ..+.+.+.
T Consensus 28 ~~G~i~~i~G~~-----GsGKTtl~~~l~~~~~-----~g~~~-~g~~~~~--~~~v~~~~~e~~~---~~~~~r~~--- 88 (279)
T 1nlf_A 28 VAGTVGALVSPG-----GAGKSMLALQLAAQIA-----GGPDL-LEVGELP--TGPVIYLPAEDPP---TAIHHRLH--- 88 (279)
T ss_dssp ETTSEEEEEEST-----TSSHHHHHHHHHHHHH-----TCCCT-TCCCCCC--CCCEEEEESSSCH---HHHHHHHH---
T ss_pred cCCCEEEEEcCC-----CCCHHHHHHHHHHHHh-----cCCCc-CCCccCC--CccEEEEECCCCH---HHHHHHHH---
Confidence 356566666665 8999999999998654 35553 3544321 3467888776532 01112211
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCC--CCCHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT--GLDSF 205 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs--gLD~~ 205 (622)
.+.. .... ...+++++.+++.+..+..+.. ||+||+|++ ++++.+|+++++||||+ ++|+.
T Consensus 89 ~~g~--~~~~----~~~~~~~~~l~l~~~~~~~~~~--------ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~ 151 (279)
T 1nlf_A 89 ALGA--HLSA----EERQAVADGLLIQPLIGSLPNI--------MAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEEN 151 (279)
T ss_dssp HHHT--TSCH----HHHHHHHHHEEECCCTTSCCCT--------TSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTT
T ss_pred HHHh--hcCh----hhhhhccCceEEeecCCCCccc--------CCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcC
Confidence 1111 1111 2345678888888777766555 999998875 68889999999999999 99985
Q ss_pred HH---HHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 206 SA---SKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 206 ~~---~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.. .++++.|++++++.|+|||+++|+.
T Consensus 152 ~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~ 181 (279)
T 1nlf_A 152 ASGPMAQVIGRMEAIAADTGCSIVFLHHAS 181 (279)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCEEEEEEEC-
T ss_pred chHHHHHHHHHHHHHHHHcCCEEEEEecCC
Confidence 44 8899999999866799999999985
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-15 Score=164.48 Aligned_cols=163 Identities=11% Similarity=0.027 Sum_probs=97.3
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..++++||++.| |+..+++++++++ +++|+| |||||||+++|+|...+.. ..|.+.+++.+
T Consensus 10 ~~l~~~~l~~~y--~~~~vl~~vsf~I-----------~lvG~s-----GaGKSTLln~L~g~~~~~~-~~~~~~~~~~~ 70 (418)
T 2qag_C 10 GYVGFANLPNQV--YRKSVKRGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLYSP-EYPGPSHRIKK 70 (418)
T ss_dssp -----CCCCCCT--TTTTCC-CCCEEE-----------EEECCT-----TSSHHHHHHHHTTCCCCCC-CCCSCC-----
T ss_pred CcEEEEecceeE--CCEEEecCCCEEE-----------EEECCC-----CCcHHHHHHHHhCCCCCCC-CCCCcccCCcc
Confidence 458899999986 6778999999876 667665 8999999999999987421 12222222211
Q ss_pred cCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 96 VEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 96 ~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
...++.+++++|++.+++.+||.||+.++..... .+....+.+.++. . ++.+
T Consensus 71 --t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~------~~~~~~i~~~i~~---------~-----------~~~~ 122 (418)
T 2qag_C 71 --TVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN------SNCWQPVIDYIDS---------K-----------FEDY 122 (418)
T ss_dssp --CCEEEEEECC------CEEEEEEECC-----------------CHHHHHHHHH---------H-----------HHHH
T ss_pred --ceeeeeEEEEEecCCcccceeeeechhhhhhccc------hhhHHHHHHHHHH---------H-----------HHHH
Confidence 1123568999999988899999999988643211 1111112222221 1 7788
Q ss_pred HHHHHHHHHHHhhCCC---eEEEeCCC-CCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 176 ERKRLSFATELLTDPA---LLLCDEPT-TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~---lLlLDEPT-sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++||++|||+++.+|+ +|++|||| .|||+... ++++++.. +.++|+++|-
T Consensus 123 l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~--~v~iIlVinK 176 (418)
T 2qag_C 123 LNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHE--KVNIIPLIAK 176 (418)
T ss_dssp TTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTT--TSEEEEEEES
T ss_pred HHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhc--cCcEEEEEEc
Confidence 8999999999999999 99999999 69999873 45566643 6788888775
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-16 Score=154.39 Aligned_cols=175 Identities=13% Similarity=0.024 Sum_probs=94.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC-----CCCCceeeEEEE
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV-----IDDCIIDGDIRV 91 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~-----~~~~~~~G~I~~ 91 (622)
+++++||+|.| + .+++++ +.+ .++..++++|++ |||||||+|.|+|.. .| ..|++.+
T Consensus 3 ~l~~~~~~~~~--~-~~~l~~--~~~-----~~~~~v~lvG~~-----g~GKSTLl~~l~g~~~~~~~~~---~~G~~~~ 64 (210)
T 1pui_A 3 NLNYQQTHFVM--S-APDIRH--LPS-----DTGIEVAFAGRS-----NAGKSSALNTLTNQKSLARTSK---TPGRTQL 64 (210)
T ss_dssp --------CEE--E-ESSGGG--SSC-----SCSEEEEEEECT-----TSSHHHHHTTTCCC----------------CC
T ss_pred chhhhhhhhee--e-cCCHhH--CCC-----CCCcEEEEECCC-----CCCHHHHHHHHhCCCccccccC---CCcccee
Confidence 47899999997 3 355655 444 456677888776 799999999999987 44 3566543
Q ss_pred CCEecCccccccEEEEecCCCC----CCCCC---HHHHHHHHHHc-CC----------CccccHHHHHHHHHHHHHHhCC
Q psy2519 92 NGKPVEGKFRSACGFMYQHDLF----SPSLT---VYEHLYFMALL-KL----------DRRVKAYQRIALINSLLIELGL 153 (622)
Q Consensus 92 ~G~~~~~~~r~~igyV~Q~~~l----~~~lT---V~E~l~f~~~l-~~----------~~~~~~~~~~~~v~~~l~~lgL 153 (622)
.+.-. ....+-++ +.+.+ .+.-. .+..+...... .. ....+. ..+.+.++++..++
T Consensus 65 ~~~~~---~~~~~~l~-Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~--~~~~~~~~~~~~~~ 138 (210)
T 1pui_A 65 INLFE---VADGKRLV-DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD--LDQQMIEWAVDSNI 138 (210)
T ss_dssp EEEEE---EETTEEEE-ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCH--HHHHHHHHHHHTTC
T ss_pred eEEEE---ecCCEEEE-ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCch--hHHHHHHHHHHcCC
Confidence 22100 00001010 10100 00000 11122221110 00 000111 12334566777777
Q ss_pred Ccc-cCCccCCcCCCCccccChHHHHH-HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE
Q psy2519 154 MNS-QHTRIGSSSITQKVVLSGGERKR-LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT 224 (622)
Q Consensus 154 ~~~-~~~~v~~~~~~~~~gLSgGqrqR-vsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t 224 (622)
... ..+++.. +|+||||| +..+++++.+|+++++|||||++|.....++.+.|.++.+ +|.|
T Consensus 139 ~~~~v~nK~D~--------~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~-~~~~ 202 (210)
T 1pui_A 139 AVLVLLTKADK--------LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS-EMQP 202 (210)
T ss_dssp CEEEEEECGGG--------SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-----
T ss_pred CeEEEEecccC--------CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh-hccc
Confidence 643 2455555 99999999 8999999999999999999999999999999999999876 4543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.50 E-value=1.3e-15 Score=161.21 Aligned_cols=158 Identities=14% Similarity=0.088 Sum_probs=96.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCC--CCCC-ceeeE-EEECCEecCccccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQV--IDDC-IIDGD-IRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~--~~~~-~~~G~-I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.+.+.|+| |||||||++.|++.. +|+. ...|+ |++++++.. .++++++++|+..+++. ++.||+
T Consensus 129 ~~G~i~~I~G~~-----GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~--~~~~i~~i~q~~~~~~~-~v~~ni 200 (349)
T 1pzn_A 129 ETQAITEVFGEF-----GSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF--RPERIREIAQNRGLDPD-EVLKHI 200 (349)
T ss_dssp ESSEEEEEEEST-----TSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC--CHHHHHHHHHTTTCCHH-HHGGGE
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC--CHHHHHHHHHHcCCCHH-HHhhCE
Confidence 355566666665 899999999999987 4420 01367 888887541 23556777776655443 555554
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh-------hCCCeEEEe
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLLCD 196 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~-------~~P~lLlLD 196 (622)
.+... . -|.+|+|++.++++++ .+|+++++|
T Consensus 201 ~~~~~------~------------------------------------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlD 238 (349)
T 1pzn_A 201 YVARA------F------------------------------------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVD 238 (349)
T ss_dssp EEEEC------C------------------------------------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEE
T ss_pred EEEec------C------------------------------------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEe
Confidence 33210 0 1233444444444444 789999999
Q ss_pred CCCCCCCHHH------------HHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecC
Q psy2519 197 EPTTGLDSFS------------ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 197 EPTsgLD~~~------------~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
|||+++|+.. ..++++.|++++++.|+|||+++|.. ......++.......|+++.++.
T Consensus 239 s~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~-~~~~~~~~~~~~~~~G~~l~~~~ 309 (349)
T 1pzn_A 239 SLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQ-ARPDAFFGDPTRPIGGHILAHSA 309 (349)
T ss_dssp TSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----------------CCCCCTTC
T ss_pred CchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccc-cccccccCCccccCCcceEeecC
Confidence 9999999852 46777888888877799999999985 45544556666777787776654
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5.7e-15 Score=171.30 Aligned_cols=160 Identities=16% Similarity=0.064 Sum_probs=107.2
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEec
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQ 109 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q 109 (622)
|+..++++++++ ++|+.++++|+| |||||||||+|+|..... ..| ..+.. .+..++++.|
T Consensus 593 ~~~~vlndisl~------~~g~i~~ItGpN-----GsGKSTlLr~iagl~~~~--q~G------~~vpa-~~~~i~~~~~ 652 (800)
T 1wb9_A 593 NEPFIANPLNLS------PQRRMLIITGPN-----MGGKSTYMRQTALIALMA--YIG------SYVPA-QKVEIGPIDR 652 (800)
T ss_dssp SSCCCCEEEEEC------SSSCEEEEECCT-----TSSHHHHHHHHHHHHHHH--TTT------CCBSS-SEEEECCCCE
T ss_pred CCceeeeccccc------CCCcEEEEECCC-----CCChHHHHHHHHHHHHHH--hcC------cccch-hcccceeHHH
Confidence 445577777764 256667777776 899999999999975321 112 22211 1234666655
Q ss_pred CCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhC
Q psy2519 110 HDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTD 189 (622)
Q Consensus 110 ~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~ 189 (622)
+++.+++.|++..+ ..+ +|++|++ ++.+..++++
T Consensus 653 ---i~~~~~~~d~l~~~----------------------------------~st--------f~~e~~~-~~~il~~a~~ 686 (800)
T 1wb9_A 653 ---IFTRVGAADDLASG----------------------------------RST--------FMVEMTE-TANILHNATE 686 (800)
T ss_dssp ---EEEEEC-----------------------------------------------------CHHHHHH-HHHHHHHCCT
T ss_pred ---HHhhCCHHHHHHhh----------------------------------hhh--------hhHHHHH-HHHHHHhccC
Confidence 45555665554221 112 6777764 4445557899
Q ss_pred CCeEEEeCCCCCCCHHHHHHH-HHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecCh
Q psy2519 190 PALLLCDEPTTGLDSFSASKL-IRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSK 257 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i-~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~ 257 (622)
|+++|||||++|+|+.....+ .++++.++++.|.++|++||++ ++.+++|++..+.+|++.+....
T Consensus 687 psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~--el~~l~d~~~~v~n~~~~~~~~~ 753 (800)
T 1wb9_A 687 YSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF--ELTQLPEKMEGVANVHLDALEHG 753 (800)
T ss_dssp TEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG--GGGGHHHHSTTEEEEEEEEEEET
T ss_pred CCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCH--HHHHHhhhhhceEEEEEEEEEcC
Confidence 999999999999999888876 7889999874589999999996 45579999988999988776543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.9e-15 Score=147.77 Aligned_cols=78 Identities=14% Similarity=0.071 Sum_probs=67.2
Q ss_pred cChHHHHHHHHHHHHhhCCC--eEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCCEEEEEeccCc-------HHHHhhc
Q psy2519 172 LSGGERKRLSFATELLTDPA--LLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPS-------SELIDMF 240 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~--lLlLDEPTsgL--D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------~~i~~~~ 240 (622)
.|.+|.++...+.....+|+ ++++||||+++ |+..+.++++.|++++++.|.|||+++|+.. ..+.++|
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~ 183 (235)
T 2w0m_A 104 LTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVA 183 (235)
T ss_dssp CCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHC
T ss_pred CCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheee
Confidence 69999999888888888999 99999999887 9999999999999998767999999999962 3488899
Q ss_pred cceeeecCC
Q psy2519 241 DKIILLADS 249 (622)
Q Consensus 241 D~v~~L~~G 249 (622)
|++++|+..
T Consensus 184 d~vi~l~~~ 192 (235)
T 2w0m_A 184 DGIIRFRRM 192 (235)
T ss_dssp SEEEEEEEE
T ss_pred eEEEEEEEE
Confidence 999999754
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=3.3e-14 Score=150.55 Aligned_cols=126 Identities=17% Similarity=0.194 Sum_probs=85.0
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
.++|.++++|+| ||||||||++|+|++++. ..|.|...+.++....+...+++.|.......
T Consensus 121 ~~~g~i~I~Gpt-----GSGKTTlL~~l~g~~~~~--~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~----------- 182 (356)
T 3jvv_A 121 VPRGLVLVTGPT-----GSGKSTTLAAMLDYLNNT--KYHHILTIEDPIEFVHESKKCLVNQREVHRDT----------- 182 (356)
T ss_dssp CSSEEEEEECST-----TSCHHHHHHHHHHHHHHH--CCCEEEEEESSCCSCCCCSSSEEEEEEBTTTB-----------
T ss_pred CCCCEEEEECCC-----CCCHHHHHHHHHhcccCC--CCcEEEEccCcHHhhhhccccceeeeeecccc-----------
Confidence 356666666665 899999999999998872 14666544433322223333444443211111
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~ 207 (622)
++-.+ +||++|..+|++|++|||| |+.+
T Consensus 183 --------------------------------------------~~~~~----~La~aL~~~PdvillDEp~---d~e~- 210 (356)
T 3jvv_A 183 --------------------------------------------LGFSE----ALRSALREDPDIILVGEMR---DLET- 210 (356)
T ss_dssp --------------------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---SHHH-
T ss_pred --------------------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---CHHH-
Confidence 22222 8999999999999999999 6554
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 208 ~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
.+.+.+.++ .|.||++|+|+.+ .+ +.+||++.|..|
T Consensus 211 ---~~~~~~~~~-~G~~vl~t~H~~~-~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 211 ---IRLALTAAE-TGHLVFGTLHTTS-AA-KTIDRVVDVFPA 246 (356)
T ss_dssp ---HHHHHHHHH-TTCEEEEEESCSS-HH-HHHHHHHHTSCH
T ss_pred ---HHHHHHHHh-cCCEEEEEEccCh-HH-HHHHHHhhhcCc
Confidence 444455565 6999999999973 44 789999999655
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-16 Score=150.99 Aligned_cols=170 Identities=14% Similarity=0.135 Sum_probs=110.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKL 131 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~ 131 (622)
.++++|+| |||||||+++|++ + .+|++.++|.++... ...|+++|.....+.+|+++++.+.+....
T Consensus 4 ii~l~G~~-----GaGKSTl~~~L~~---~---~~g~~~i~~d~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 70 (189)
T 2bdt_A 4 LYIITGPA-----GVGKSTTCKRLAA---Q---LDNSAYIEGDIINHM--VVGGYRPPWESDELLALTWKNITDLTVNFL 70 (189)
T ss_dssp EEEEECST-----TSSHHHHHHHHHH---H---SSSEEEEEHHHHHTT--CCTTCCCGGGCHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCC-----CCcHHHHHHHHhc---c---cCCeEEEcccchhhh--hccccccCccchhHHHHHHHHHHHHHHHHH
Confidence 34556565 8999999999997 3 368999998765432 235677776655566788888877543211
Q ss_pred CccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcccc--ChHHHHHHHHHH------HHhhCCCeEEEeCCCCCCC
Q psy2519 132 DRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVL--SGGERKRLSFAT------ELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 132 ~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gL--SgGqrqRvsIA~------aL~~~P~lLlLDEPTsgLD 203 (622)
... ...+++.+. .....+.+ +.+ |+||+|++.++. +++.+|+...+|| +||
T Consensus 71 ~~~---------~~~ild~~~-~~~~~~~~--------~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld 129 (189)
T 2bdt_A 71 LAQ---------NDVVLDYIA-FPDEAEAL--------AQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMG 129 (189)
T ss_dssp HTT---------CEEEEESCC-CHHHHHHH--------HHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------C
T ss_pred hcC---------CcEEEeecc-CHHHHHHH--------HHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCC
Confidence 000 000011000 00000011 125 889998988888 9999999988884 899
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEecc-CcHHHHhhccceeeecCCceEEecChHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQ-PSSELIDMFDKIILLADSRTAFIGSKDAA 260 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~-~~~~i~~~~D~v~~L~~G~iv~~G~~~~~ 260 (622)
+..... .+.++++.+ .+.++|.++|+ + +++.+.||+|+ ++|+++..|+++.+
T Consensus 130 ~~~~~~-~~~~~~~~~-~~~~ii~tsh~~~-~~~e~~~~~i~--~~g~~~~~~~~~~~ 182 (189)
T 2bdt_A 130 ERCLEL-VEEFESKGI-DERYFYNTSHLQP-TNLNDIVKNLK--TNPRFIFCMAGDPL 182 (189)
T ss_dssp GGGGHH-HHHHHHTTC-CTTSEEECSSSCG-GGHHHHHHHHH--HCGGGSCC------
T ss_pred HHHHHH-HHHHhhcCC-CccEEEeCCCCCh-hhHHHHHHHHh--hCCcEEEeecCCch
Confidence 998888 888888865 57899999998 6 57889999999 99999999998754
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.41 E-value=4e-13 Score=143.33 Aligned_cols=76 Identities=33% Similarity=0.465 Sum_probs=66.8
Q ss_pred ccChHHHHHH------HHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 171 VLSGGERKRL------SFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 171 gLSgGqrqRv------sIA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.||||||||+ ++|++|+.+ |++|||||||+|||+..+..+.+.|+++.+ +.+||++||++ ++...+|++
T Consensus 280 ~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~--~~~vi~~th~~--~~~~~~d~~ 355 (371)
T 3auy_A 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKS--IPQMIIITHHR--ELEDVADVI 355 (371)
T ss_dssp GSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCS--CSEEEEEESCG--GGGGGCSEE
T ss_pred hcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhcc--CCeEEEEEChH--HHHhhCCEE
Confidence 4999999988 567889999 999999999999999999999999999753 46899999996 467899999
Q ss_pred eeec-CCc
Q psy2519 244 ILLA-DSR 250 (622)
Q Consensus 244 ~~L~-~G~ 250 (622)
++++ +|.
T Consensus 356 ~~l~k~~~ 363 (371)
T 3auy_A 356 INVKKDGN 363 (371)
T ss_dssp EEEEESSS
T ss_pred EEEEecCC
Confidence 9997 443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=2.2e-14 Score=141.87 Aligned_cols=146 Identities=12% Similarity=0.056 Sum_probs=101.1
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCH----HHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTV----YEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV----~E~l 123 (622)
.+|+.++++|+| |||||||+++|+|+.+|+ ..+|.|.+.+++.....++.++|+||++.+++.+|+ .|++
T Consensus 14 ~~G~ii~l~Gps-----GsGKSTLlk~L~g~~~p~-~~~g~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 14 AQGTLYIVSAPS-----GAGKSSLIQALLKTQPLY-DTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp -CCCEEEEECCT-----TSCHHHHHHHHHHHSCTT-TEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCcEEEEECCC-----CCCHHHHHHHHhccCCCC-ceEEEEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 456677777665 899999999999999862 268999999987654446679999998766555554 3332
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD 203 (622)
.+....+ |.| +++ +.+++..++++||| ||
T Consensus 88 ~~~~~~y----------------------------------------g~~---~~~---v~~~l~~G~illLD-----LD 116 (219)
T 1s96_A 88 EVFGNYY----------------------------------------GTS---REA---IEQVLATGVDVFLD-----ID 116 (219)
T ss_dssp EETTEEE----------------------------------------EEE---HHH---HHHHHTTTCEEEEE-----CC
T ss_pred HHHhccC----------------------------------------CCC---HHH---HHHHHhcCCeEEEE-----EC
Confidence 2211110 111 111 23444557999999 99
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHHH
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFLE 265 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~~ 265 (622)
+..+.++.+.+. .+.||++++|++ +++.+ |+ +.+| .++++++..-+.
T Consensus 117 ~~~~~~i~~~l~-----~~~tI~i~th~~-~~l~~---Rl--~~rG----~~~~e~i~~rl~ 163 (219)
T 1s96_A 117 WQGAQQIRQKMP-----HARSIFILPPSK-IELDR---RL--RGRG----QDSEEVIAKRMA 163 (219)
T ss_dssp HHHHHHHHHHCT-----TCEEEEEECSSH-HHHHH---HH--HTTS----CSCHHHHHHHHH
T ss_pred HHHHHHHHHHcc-----CCEEEEEECCCH-HHHHH---HH--HHcC----CCCHHHHHHHHH
Confidence 999999999875 489999999996 45543 53 6777 678887765543
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-12 Score=142.95 Aligned_cols=74 Identities=16% Similarity=0.254 Sum_probs=67.9
Q ss_pred ccChHHHHHHHHHHHHh----hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 171 VLSGGERKRLSFATELL----TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~----~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
.||||||||++||++|+ .+|+++||||||++||+..+..+.+.|+++.+ .|.++|++||++ ...+.||+++.+
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~-~~~~~ii~th~~--~~~~~~d~~~~~ 409 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVGV 409 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhc-CCCEEEEEECCH--HHHHhCCEEEEE
Confidence 49999999999999999 57999999999999999999999999999875 588999999994 567889999999
Q ss_pred c
Q psy2519 247 A 247 (622)
Q Consensus 247 ~ 247 (622)
.
T Consensus 410 ~ 410 (430)
T 1w1w_A 410 Y 410 (430)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.3e-13 Score=146.52 Aligned_cols=154 Identities=10% Similarity=0.034 Sum_probs=111.0
Q ss_pred ccCCcccc---ccccceeee---------EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee
Q psy2519 19 EVPNVDFS---EIVGSVQVY---------AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID 86 (622)
Q Consensus 19 ~~~~~~~~---~~~g~~~~l---------~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~ 86 (622)
++++++|+ |+..+.++| +++++.+ ++|+.++++|++ |||||||+++|+|+.+| .+
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i-----~~G~~i~ivG~s-----GsGKSTll~~l~~~~~~---~~ 203 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAV-----QLERVIVVAGET-----GSGKTTLMKALMQEIPF---DQ 203 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHH-----HTTCCEEEEESS-----SSCHHHHHHHHHTTSCT---TS
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHH-----hcCCEEEEECCC-----CCCHHHHHHHHHhcCCC---Cc
Confidence 89999998 743233455 8889888 677788888776 89999999999999998 48
Q ss_pred eEEEECCEec-Cc-cccccEEEEe-cCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCC
Q psy2519 87 GDIRVNGKPV-EG-KFRSACGFMY-QHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGS 163 (622)
Q Consensus 87 G~I~~~G~~~-~~-~~r~~igyV~-Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~ 163 (622)
|.|.++|.+- .. ..++.++|++ |++.+ .
T Consensus 204 g~I~ie~~~e~~~~~~~~~v~~v~~q~~~~-------------------------------------------------~ 234 (361)
T 2gza_A 204 RLITIEDVPELFLPDHPNHVHLFYPSEAKE-------------------------------------------------E 234 (361)
T ss_dssp CEEEEESSSCCCCTTCSSEEEEECC-------------------------------------------------------
T ss_pred eEEEECCccccCccccCCEEEEeecCcccc-------------------------------------------------c
Confidence 9999998531 11 2567889998 54431 0
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
++++..+|..|+.++..+|+.+++|||+. .++.+.++.+.. .+.|++.++|.. .....+||+
T Consensus 235 --------~~~~~t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~-g~~~~l~t~H~~--~~~~~~~Rl 296 (361)
T 2gza_A 235 --------ENAPVTAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAAS-GHGGSITSCHAG--SCELTFERL 296 (361)
T ss_dssp ------------CCHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHT-TCCSCEEEEECS--SHHHHHHHH
T ss_pred --------cccccCHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhc-CCCeEEEEECCC--CHHHHHHHH
Confidence 12223356666777777899999999986 356677777764 456889999985 367889999
Q ss_pred eeecCCceE
Q psy2519 244 ILLADSRTA 252 (622)
Q Consensus 244 ~~L~~G~iv 252 (622)
..+..|...
T Consensus 297 ~~l~~~~~~ 305 (361)
T 2gza_A 297 ALMVLQNRQ 305 (361)
T ss_dssp HHHHTTSTT
T ss_pred HHHHhcccc
Confidence 999887543
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=1.6e-16 Score=169.29 Aligned_cols=162 Identities=9% Similarity=-0.015 Sum_probs=101.0
Q ss_pred EeeeeEEEEcccCC--CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCcee----eEEEEC----CEecCc---cccc
Q psy2519 36 AIVNLLVIMDQTAS--TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIID----GDIRVN----GKPVEG---KFRS 102 (622)
Q Consensus 36 ~~v~l~~~~~~~~~--~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~----G~I~~~----G~~~~~---~~r~ 102 (622)
+.|++++ .+ +++.+++|+| |||||||+++|+|+.+| .+ |+|.++ |.+... ++ +
T Consensus 159 ~~v~~~v-----~~~lg~k~~IvG~n-----GsGKSTLlk~L~gl~~~---~~~~e~G~i~i~~~~~~~~~~~~~~~~-~ 224 (365)
T 1lw7_A 159 KFIPKEA-----RPFFAKTVAILGGE-----SSGKSVLVNKLAAVFNT---TSAWEYGREFVFEKLGGDEQAMQYSDY-P 224 (365)
T ss_dssp GGSCTTT-----GGGTCEEEEEECCT-----TSHHHHHHHHHHHHTTC---EEECCTTHHHHHHSSSSCTTSSCTTTH-H
T ss_pred hhCCHHH-----HHhhhCeEEEECCC-----CCCHHHHHHHHHHHhCC---CcchhhHHHHHHhhcCCCcccCChhHH-H
Confidence 3455555 45 6788888776 89999999999999988 46 776653 222210 11 2
Q ss_pred cEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHH
Q psy2519 103 ACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSF 182 (622)
Q Consensus 103 ~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsI 182 (622)
.+++++|+..++ ..|+.||+.+. + .+..++.+.. +|+|++||..+
T Consensus 225 ~I~~~~q~~~~~-~~t~~~nl~~~-------------------------~-~~~~~~~~~~--------~~~~~~~~~~i 269 (365)
T 1lw7_A 225 QMALGHQRYIDY-AVRHSHKIAFI-------------------------D-TDFITTQAFC--------IQYEGKAHPFL 269 (365)
T ss_dssp HHHHHHHHHHHH-HHHHCSSEEEE-------------------------S-SCHHHHHHHH--------HHHHSCCCHHH
T ss_pred HHHHHHHHHHHH-HHhccCCEEEE-------------------------e-CCchHHHHHH--------HHHcCCCCHHH
Confidence 233333322111 11222222110 0 0011111111 67777888888
Q ss_pred HHHHh-hCCCeEEEeC---CC------CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 183 ATELL-TDPALLLCDE---PT------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 183 A~aL~-~~P~lLlLDE---PT------sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
++++. .+|++++||| |+ .++|+..+..+.+.|+++.++.|.+|++++|. . +..+++|++.++++
T Consensus 270 ~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~-~~~r~~~~i~~i~~ 343 (365)
T 1lw7_A 270 DSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-S-YLDRYNQVKAVIEK 343 (365)
T ss_dssp HHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-S-HHHHHHHHHHHHHH
T ss_pred HHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-C-HHHHHHHHHHHHHH
Confidence 88775 5999999999 65 58999999999999999876568999999986 2 66778888877753
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.2e-15 Score=144.72 Aligned_cols=149 Identities=9% Similarity=-0.040 Sum_probs=94.9
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
.+|+.++++|+| |||||||+++|+|+ + ..|.|.++|.++.. ..++.++|++|+.. +.+||.|++.+
T Consensus 7 ~~g~~i~l~G~~-----GsGKSTl~~~La~~--~---~~g~i~i~~d~~~~~~~~~~~~~~~~~~~~--~~~~v~~~l~~ 74 (191)
T 1zp6_A 7 LGGNILLLSGHP-----GSGKSTIAEALANL--P---GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ--QNRMIMQIAAD 74 (191)
T ss_dssp CTTEEEEEEECT-----TSCHHHHHHHHHTC--S---SSCEEEECTTHHHHTCCSSCCCTTSSSHHH--HHHHHHHHHHH
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHhc--c---CCCeEEEcccchhhhhhcccccCCccchhh--hhHHHHHHHHH
Confidence 456666777766 89999999999998 3 27999999987643 22345688888654 46789999877
Q ss_pred HHHcCCCccccHHHHHHHHHHHHHHhCCCccc--CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCC
Q psy2519 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQ--HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203 (622)
Q Consensus 126 ~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~--~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD 203 (622)
.+........ ...++.+++..++.... +..+.. +|+|++||+.++|++..+|+++ +|
T Consensus 75 ~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~--------ls~~~~~~v~~~R~~~r~~~~l--------ld 133 (191)
T 1zp6_A 75 VAGRYAKEGY-----FVILDGVVRPDWLPAFTALARPLHY--------IVLRTTAAEAIERCLDRGGDSL--------SD 133 (191)
T ss_dssp HHHHHHHTSC-----EEEECSCCCTTTTHHHHTTCSCEEE--------EEEECCHHHHHHHHHTTCTTSC--------CC
T ss_pred HHHHHhccCC-----eEEEeccCcHHHHHHHHhcCCCeEE--------EEecCCHHHHHHHHHhcCCCcc--------CC
Confidence 5432100000 00001111111111111 222223 9999999999999999999886 68
Q ss_pred HHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 204 SFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 204 ~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
+....++.+.++++.+ .+..+|.++|
T Consensus 134 ~~~~~~~~~~~~~l~~-~~~~~i~t~~ 159 (191)
T 1zp6_A 134 PLVVADLHSQFADLGA-FEHHVLPVSG 159 (191)
T ss_dssp HHHHHHHHHHTTCCGG-GGGGEEECTT
T ss_pred HHHHHHHHHHHhccCc-ccccEEECCC
Confidence 8888888888877654 3334444444
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=9.1e-14 Score=149.61 Aligned_cols=191 Identities=13% Similarity=0.063 Sum_probs=116.7
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcc--eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSK--TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~--~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+++.+ +++| |+.+ ++++|+++ ++|+. ++++|+| |||||||+|+|+|+.- .|.-.-.
T Consensus 14 ~~~l~~~~-~~~y--~~~~-L~~vsl~i-----~~Gei~~vaLvG~n-----GaGKSTLln~L~G~~l-----~g~~~~~ 74 (427)
T 2qag_B 14 CRTVPLAG-HVGF--DSLP-DQLVNKSV-----SQGFCFNILCVGET-----GLGKSTLMDTLFNTKF-----EGEPATH 74 (427)
T ss_dssp ---CCCCC-CC-C--C--C-HHHHHHSC-----C-CCEEEEEEECST-----TSSSHHHHHHHHTSCC------------
T ss_pred CceEEEee-EEEE--CCee-cCCCceEe-----cCCCeeEEEEECCC-----CCCHHHHHHHHhCccc-----cCCcCCC
Confidence 35567777 6664 6666 99999998 56666 7788776 8999999999999842 2221100
Q ss_pred CEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcccc--HHHHHHHHHHHHHHh-CCCc----ccCCccCC--
Q psy2519 93 GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVK--AYQRIALINSLLIEL-GLMN----SQHTRIGS-- 163 (622)
Q Consensus 93 G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~--~~~~~~~v~~~l~~l-gL~~----~~~~~v~~-- 163 (622)
.. ....++.++|++|++.+++.+||.||+.|+.......... .....+..++.++.. ++.. ..|..+..
T Consensus 75 -~~-~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v 152 (427)
T 2qag_B 75 -TQ-PGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCL 152 (427)
T ss_dssp -CC-SSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEE
T ss_pred -CC-ccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEE
Confidence 00 1123567999999999889999999987753211000000 011233455666655 5432 12222110
Q ss_pred --cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH-HHhcCCCEEEEEecc
Q psy2519 164 --SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE-LTSQRKKTVLCTIHQ 231 (622)
Q Consensus 164 --~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~-l~~~~g~tvi~~tH~ 231 (622)
..|. ..+|+-.+ +.|+++|..+++++++|||+..|.+.....+.+.+++ +.+ .|.+|+.++.+
T Consensus 153 ~fI~d~-~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~-~gi~I~~is~~ 218 (427)
T 2qag_B 153 YFIAPT-GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVS-NGVQIYQFPTD 218 (427)
T ss_dssp EEECCC-C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBT-TBCCCCCCC--
T ss_pred EEEeCC-CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHH-cCCcEEecCCC
Confidence 0000 13477666 7899999999999999999999999999999999997 765 79999988865
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.1e-12 Score=128.28 Aligned_cols=78 Identities=14% Similarity=0.086 Sum_probs=62.5
Q ss_pred cChHH--HHHHHHHHHHhhC-CCeEEEeCCCCCCCHHH--------HHHHHHHHHHHHhcCCCEEEEEeccCcH------
Q psy2519 172 LSGGE--RKRLSFATELLTD-PALLLCDEPTTGLDSFS--------ASKLIRMMRELTSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 172 LSgGq--rqRvsIA~aL~~~-P~lLlLDEPTsgLD~~~--------~~~i~~~l~~l~~~~g~tvi~~tH~~~~------ 234 (622)
.|+++ +++++.+++++.+ |+++++||||+++|+.. ..++++.|++++++.|.|||+++|....
T Consensus 85 ~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~ 164 (220)
T 2cvh_A 85 PSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMT 164 (220)
T ss_dssp CTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSC
T ss_pred cCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCcc
Confidence 45553 5688888999986 99999999999999743 3556777889887679999999997531
Q ss_pred ------HHHhhccceeeecCC
Q psy2519 235 ------ELIDMFDKIILLADS 249 (622)
Q Consensus 235 ------~i~~~~D~v~~L~~G 249 (622)
.+.+.||++++|+..
T Consensus 165 ~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 165 KPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CSCCCHHHHHTSSEEEEEEEC
T ss_pred ccCCCcceeecCcEEEEEEEe
Confidence 577899999999754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=3.3e-16 Score=163.81 Aligned_cols=158 Identities=13% Similarity=0.087 Sum_probs=104.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC--------CCCCceeeEEEECCEecCc-------------------cccccE
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV--------IDDCIIDGDIRVNGKPVEG-------------------KFRSAC 104 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~--------~~~~~~~G~I~~~G~~~~~-------------------~~r~~i 104 (622)
.+++.|.+ |||||||||.|.|.. .+ ..|+|.++|.++.. ++++.+
T Consensus 6 v~~i~G~~-----GaGKTTll~~l~~~~~~~~~aVi~~---d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l 77 (318)
T 1nij_A 6 VTLLTGFL-----GAGKTTLLRHILNEQHGYKIAVIEN---EFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDAL 77 (318)
T ss_dssp EEEEEESS-----SSSCHHHHHHHHHSCCCCCEEEECS---SCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHH
T ss_pred EEEEEecC-----CCCHHHHHHHHHhhcCCCcEEEEEe---cCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHH
Confidence 44555665 899999999999986 34 58999999988743 134557
Q ss_pred EEE---ecCCCCCCCCCHHHHHHHHHHcCCCccc---cHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHH
Q psy2519 105 GFM---YQHDLFSPSLTVYEHLYFMALLKLDRRV---KAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERK 178 (622)
Q Consensus 105 gyV---~Q~~~l~~~lTV~E~l~f~~~l~~~~~~---~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrq 178 (622)
+++ +|+..+++..+|.||..++......... +......+++.++..+++.+..++.. + +|+||+|
T Consensus 78 ~~l~~~~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~-~--------ls~g~~Q 148 (318)
T 1nij_A 78 LDLLDNLDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMN-Q--------FTIAQSQ 148 (318)
T ss_dssp HHHHHHHHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHH-H--------CHHHHHH
T ss_pred HHHHhHHhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHh-h--------chHHHHH
Confidence 777 6777777788888887653100000000 11111112233444445544443332 2 8999999
Q ss_pred HHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 179 RLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 179 RvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
|+..+++++.+|+++ ||| .++.+.+++++ .+.||++++|++. ++..++
T Consensus 149 ~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~--~~~~ii~~sh~~~-~~~~l~ 196 (318)
T 1nij_A 149 VGYADRILLTKTDVA--GEA---------EKLHERLARIN--ARAPVYTVTHGDI-DLGLLF 196 (318)
T ss_dssp HHTCSEEEEECTTTC--SCT---------HHHHHHHHHHC--SSSCEEECCSSCC-CGGGGS
T ss_pred HHhCCEEEEECcccC--CHH---------HHHHHHHHHhC--CCCeEEEecccCC-CHHHHh
Confidence 999999999999987 999 78888888885 4899999999863 343344
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.31 E-value=4.9e-15 Score=148.82 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=98.9
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHh---CCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFL---SQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~---g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
++.++++|+| |||||||+++|+ |+..+ .+|+|.++|.+......+.+++++|+..++|..|+.|++...
T Consensus 27 ~~~i~l~G~~-----GsGKSTl~k~La~~lg~~~~---~~G~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~l~~~ 98 (246)
T 2bbw_A 27 LLRAVILGPP-----GSGKGTVCQRIAQNFGLQHL---SSGHFLRENIKASTEVGEMAKQYIEKSLLVPDHVITRLMMSE 98 (246)
T ss_dssp CCEEEEECCT-----TSSHHHHHHHHHHHHCCCCE---EHHHHHHHHHHTTCHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHHhCCeEe---cHHHHHHHHHhcCChHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 4456666665 899999999999 99887 579998877653323344556677888888999999999875
Q ss_pred HHcC--CC---ccccHHHHHHHHHHHHH--HhC------------CCcccCCccCCcCCCCccccChHHHHHHHHHHHH-
Q psy2519 127 ALLK--LD---RRVKAYQRIALINSLLI--ELG------------LMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL- 186 (622)
Q Consensus 127 ~~l~--~~---~~~~~~~~~~~v~~~l~--~lg------------L~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL- 186 (622)
.... .. ...+... ..++.+.+ .++ +....++.+.. ||| |+ ++|
T Consensus 99 l~~~~~~~~il~g~~~~~--~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~--------lSg----rv---~al~ 161 (246)
T 2bbw_A 99 LENRRGQHWLLDGFPRTL--GQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHP--------PSG----RV---YNLD 161 (246)
T ss_dssp HHTCTTSCEEEESCCCSH--HHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEET--------TTT----EE---EETT
T ss_pred HHhcCCCeEEEECCCCCH--HHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcC--------CCC----Cc---cccc
Confidence 4210 00 0011111 11222211 112 22233455444 999 66 777
Q ss_pred hhCCCeEEEe----CCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 187 LTDPALLLCD----EPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 187 ~~~P~lLlLD----EPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
+.+|++++|| |||+|||+.+...+.+.++++.+
T Consensus 162 ~~~P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 162 FNPPHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TSCCSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred cCCCcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999999999 99999999999999999999876
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.29 E-value=1.2e-12 Score=138.21 Aligned_cols=113 Identities=13% Similarity=-0.012 Sum_probs=81.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCC-CCCceeeEEEEC-CEecCccccccEEEEecCCCCCCCCCHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVI-DDCIIDGDIRVN-GKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-~~~~~~G~I~~~-G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~ 126 (622)
+|+.++++|+| |||||||+|+|+|... + .+|+|.++ |++.....++.+++++|+..+++.+||+|+ .
T Consensus 214 ~G~~~~lvG~s-----G~GKSTLln~L~g~~~~~---~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~e~---~ 282 (358)
T 2rcn_A 214 TGRISIFAGQS-----GVGKSSLLNALLGLQNEI---LTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVREF---G 282 (358)
T ss_dssp TTSEEEEECCT-----TSSHHHHHHHHHCCSSCC---CCC-------------CCCEEEECTTSCEEEECHHHHTC---C
T ss_pred CCCEEEEECCC-----CccHHHHHHHHhcccccc---ccCCccccCCCCccceEEEEEEEECCCCEecCcccHHHh---h
Confidence 45667777665 8999999999999998 7 58999987 766544456789999999999999999984 1
Q ss_pred HHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHH
Q psy2519 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186 (622)
Q Consensus 127 ~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL 186 (622)
+. ..++++..+++.++++.+|+.+..+....+ +| ||+||++||+++
T Consensus 283 --l~---~l~~~e~~~~~~e~l~~~gl~~f~~~~~~~--------lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 283 --LW---HLEPEQITQGFVEFHDYLGHCKYRDCKHDA--------DP-GCAIREAVENGA 328 (358)
T ss_dssp --CC---CCCHHHHHHTSGGGGGGTTCSSSTTCCSSS--------CT-TCHHHHHHHHTS
T ss_pred --hc---CCCHHHHHHHHHHHHHHcCCchhcCCCccc--------CC-HHHHHHHHHhcC
Confidence 11 234455567788999999998888888666 99 999999999864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-12 Score=138.43 Aligned_cols=125 Identities=17% Similarity=0.194 Sum_probs=92.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
++++.++++|+| |||||||+++|+|+.+|. .+|+|.+.|.++....++.+++|+|..
T Consensus 134 ~~g~~i~ivG~~-----GsGKTTll~~l~~~~~~~--~~g~I~~~e~~~e~~~~~~~~~v~Q~~---------------- 190 (372)
T 2ewv_A 134 RKMGLILVTGPT-----GSGKSTTIASMIDYINQT--KSYHIITIEDPIEYVFKHKKSIVNQRE---------------- 190 (372)
T ss_dssp SSSEEEEEECSS-----SSSHHHHHHHHHHHHHHH--SCCEEEEEESSCCSCCCCSSSEEEEEE----------------
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHhhcCcC--CCcEEEEecccHhhhhccCceEEEeee----------------
Confidence 456667777666 899999999999998772 179998877666434567788898841
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSA 207 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~ 207 (622)
+|+. ... + +.+|+++|..+|+++++|||+ |+.+.
T Consensus 191 -----------------------~g~~------~~~--------~------~~~l~~~L~~~pd~illdE~~---d~e~~ 224 (372)
T 2ewv_A 191 -----------------------VGED------TKS--------F------ADALRAALREDPDVIFVGEMR---DLETV 224 (372)
T ss_dssp -----------------------BTTT------BSC--------S------HHHHHHHTTSCCSEEEESCCC---SHHHH
T ss_pred -----------------------cCCC------HHH--------H------HHHHHHHhhhCcCEEEECCCC---CHHHH
Confidence 1221 111 5 469999999999999999999 77664
Q ss_pred HHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 208 SKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 208 ~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.. .++. +. .|.+|+.++|+. .+.+.+||++.|..
T Consensus 225 ~~---~l~~-~~-~g~~vi~t~H~~--~~~~~~~rl~~l~~ 258 (372)
T 2ewv_A 225 ET---ALRA-AE-TGHLVFGTLHTN--TAIDTIHRIVDIFP 258 (372)
T ss_dssp HH---HHHH-HT-TTCEEEECCCCC--SHHHHHHHHHHTSC
T ss_pred HH---HHHH-Hh-cCCEEEEEECcc--hHHHHHHHHHHhcC
Confidence 43 3443 33 689999999995 47789999988753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.24 E-value=1.5e-12 Score=136.35 Aligned_cols=142 Identities=8% Similarity=0.049 Sum_probs=99.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------ccc--ccEEEEecCCCCCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KFR--SACGFMYQHDLFSPSL 117 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~r--~~igyV~Q~~~l~~~l 117 (622)
++++.+.++|+| |||||||++.|+|+++| .+|+|.++|.++.+ .++ ..+.+++|+..+.|.+
T Consensus 127 ~~g~vi~lvG~n-----GaGKTTll~~Lag~l~~---~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~ 198 (328)
T 3e70_C 127 EKPYVIMFVGFN-----GSGKTTTIAKLANWLKN---HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA 198 (328)
T ss_dssp CSSEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHHh---cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH
Confidence 345566666665 89999999999999988 48999999998753 122 3456999999999999
Q ss_pred CHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeC
Q psy2519 118 TVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197 (622)
Q Consensus 118 TV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDE 197 (622)
||+||+.++.....+. -+++..|+.+..+..+.. || .+++++..++.+++||.
T Consensus 199 ~v~e~l~~~~~~~~d~------------vliDtaG~~~~~~~l~~e--------L~-------~i~ral~~de~llvLDa 251 (328)
T 3e70_C 199 VAYDAIQHAKARGIDV------------VLIDTAGRSETNRNLMDE--------MK-------KIARVTKPNLVIFVGDA 251 (328)
T ss_dssp HHHHHHHHHHHHTCSE------------EEEEECCSCCTTTCHHHH--------HH-------HHHHHHCCSEEEEEEEG
T ss_pred HHHHHHHHHHhccchh------------hHHhhccchhHHHHHHHH--------HH-------HHHHHhcCCCCEEEEec
Confidence 9999998764321100 012333443333333222 44 38888887777777875
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 198 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|. .++++.++.+.++.+.|+|++||.
T Consensus 252 ~t~-------~~~~~~~~~~~~~~~it~iilTKl 278 (328)
T 3e70_C 252 LAG-------NAIVEQARQFNEAVKIDGIILTKL 278 (328)
T ss_dssp GGT-------THHHHHHHHHHHHSCCCEEEEECG
T ss_pred HHH-------HHHHHHHHHHHHhcCCCEEEEeCc
Confidence 543 466777788876679999999996
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-14 Score=150.85 Aligned_cols=174 Identities=13% Similarity=0.010 Sum_probs=117.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++|+++.| +...+++++++++ ++++.+.++|+| |||||||+++|+|++.| .+|+|.+.|.++
T Consensus 29 ~ie~~~~~~~~--~~~~~l~~i~~~~-----~~g~~v~i~G~~-----GaGKSTLl~~l~g~~~~---~~g~v~i~~~d~ 93 (337)
T 2qm8_A 29 LAESRRADHRA--AVRDLIDAVLPQT-----GRAIRVGITGVP-----GVGKSTTIDALGSLLTA---AGHKVAVLAVDP 93 (337)
T ss_dssp HHTCSSHHHHH--HHHHHHHHHGGGC-----CCSEEEEEECCT-----TSCHHHHHHHHHHHHHH---TTCCEEEEEECG
T ss_pred HHeeCCccccc--ChHHHHHhCCccc-----CCCeEEEEECCC-----CCCHHHHHHHHHHhhhh---CCCEEEEEEEcC
Confidence 47889999986 6667899999887 567777777776 89999999999999987 479999999887
Q ss_pred Cc--------cccccEEEEecCCCCCCCCC------------HHHHHHHHH---------------------H-------
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLT------------VYEHLYFMA---------------------L------- 128 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lT------------V~E~l~f~~---------------------~------- 128 (622)
.. ..++++++++|++.+++..+ ++|.+.... .
T Consensus 94 ~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl 173 (337)
T 2qm8_A 94 SSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFL 173 (337)
T ss_dssp GGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEE
T ss_pred cccccccchHHHhhhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEE
Confidence 42 24678999999988775422 333331110 0
Q ss_pred -cCCCccccHHHH---HHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhh------CCCeEEEeCC
Q psy2519 129 -LKLDRRVKAYQR---IALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT------DPALLLCDEP 198 (622)
Q Consensus 129 -l~~~~~~~~~~~---~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~------~P~lLlLDEP 198 (622)
+.... ...+. .+.+.+....+.+ +..|... .+.+|+|++|++..+++++. +|++++
T Consensus 174 ~v~d~~--~~~~~~~i~~~i~~~~~ivvl-NK~Dl~~-------~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~---- 239 (337)
T 2qm8_A 174 VLMLPG--AGDELQGIKKGIFELADMIAV-NKADDGD-------GERRASAAASEYRAALHILTPPSATWTPPVVT---- 239 (337)
T ss_dssp EEECSC--C------CCTTHHHHCSEEEE-ECCSTTC-------CHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----
T ss_pred EEEcCC--CcccHHHHHHHHhccccEEEE-EchhccC-------chhHHHHHHHHHHHHHHhccccccCCCCCEEE----
Confidence 00000 00100 0011111112222 2233210 12389999999999999987 688876
Q ss_pred CCCCCHHHHHHHHHHHHHHHh
Q psy2519 199 TTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 199 TsgLD~~~~~~i~~~l~~l~~ 219 (622)
||++|.....++.+.|.++.+
T Consensus 240 ~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 240 ISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp EBTTTTBSHHHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999998764
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.18 E-value=1.3e-11 Score=122.48 Aligned_cols=78 Identities=19% Similarity=0.242 Sum_probs=50.5
Q ss_pred cChHHHHH-HHHHHHHh--hCCCeEEEeCCCCCCCHH-------H-----HHHHHHHHHHHHhcCCCEEEEEeccCcHHH
Q psy2519 172 LSGGERKR-LSFATELL--TDPALLLCDEPTTGLDSF-------S-----ASKLIRMMRELTSQRKKTVLCTIHQPSSEL 236 (622)
Q Consensus 172 LSgGqrqR-vsIA~aL~--~~P~lLlLDEPTsgLD~~-------~-----~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i 236 (622)
.+..+... +.-+.+++ .+|+++++|||++.+|+. . ..++++.|++++++.|.|||+++|.. .+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~-~~~ 177 (243)
T 1n0w_A 99 FNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVV-AQV 177 (243)
T ss_dssp CSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------
T ss_pred CCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeee-ecC
Confidence 44444332 23333443 589999999999999985 3 45677778888876799999999964 233
Q ss_pred H-------------------hhccceeeecCCc
Q psy2519 237 I-------------------DMFDKIILLADSR 250 (622)
Q Consensus 237 ~-------------------~~~D~v~~L~~G~ 250 (622)
. ..||++++|+.|+
T Consensus 178 ~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~~ 210 (243)
T 1n0w_A 178 DGAAMFAADPKKPIGGNIIAHASTTRLYLRKGR 210 (243)
T ss_dssp -------------------CCTTCEEEEEEECS
T ss_pred CCccccCCCcccCCccChhhhcCcEEEEEEEcC
Confidence 2 2789999998653
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.1e-13 Score=143.67 Aligned_cols=178 Identities=11% Similarity=0.066 Sum_probs=112.7
Q ss_pred EeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------c--ccccEE
Q psy2519 36 AIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------K--FRSACG 105 (622)
Q Consensus 36 ~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~--~r~~ig 105 (622)
+++|+++ ++|+.+.++|+| |||||||+++|+|++++ .+|+|.++|.+..+ . .|+.++
T Consensus 284 ~~Isl~i-----~~GeVI~LVGpN-----GSGKTTLl~~LAgll~~---~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~ 350 (503)
T 2yhs_A 284 EPLNVEG-----KAPFVILMVGVN-----GVGKTTTIGKLARQFEQ---QGKSVMLAAGDTFRAAAVEQLQVWGQRNNIP 350 (503)
T ss_dssp CCCCCCS-----CTTEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEECCCTTCHHHHHHHHHHHHHHTCC
T ss_pred CCceeec-----cCCeEEEEECCC-----cccHHHHHHHHHHHhhh---cCCeEEEecCcccchhhHHHHHHHHHhcCce
Confidence 4566655 456677777776 89999999999999987 37999998777532 1 256799
Q ss_pred EEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 106 FMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 106 yV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
|++|+..+++.+||++|+.++.....+ . -+++..|+.+.... +-.-.+|++.++++
T Consensus 351 vV~Q~~~~~p~~tV~e~l~~a~~~~~D----------v--VLIDTaGrl~~~~~------------lm~EL~kiv~iar~ 406 (503)
T 2yhs_A 351 VIAQHTGADSASVIFDAIQAAKARNID----------V--LIADTAGRLQNKSH------------LMEELKKIVRVMKK 406 (503)
T ss_dssp EECCSTTCCHHHHHHHHHHHHHHTTCS----------E--EEECCCCSCCCHHH------------HHHHHHHHHHHHHT
T ss_pred EEecccCcCHHHHHHHHHHHHHhcCCC----------E--EEEeCCCccchhhh------------HHHHHHHHHHHHHH
Confidence 999998888999999999987532110 0 01222232211111 22233578888887
Q ss_pred Hh-hCCC-eEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec--CCceEEecChH
Q psy2519 186 LL-TDPA-LLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA--DSRTAFIGSKD 258 (622)
Q Consensus 186 L~-~~P~-lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~--~G~iv~~G~~~ 258 (622)
+. ..|. +||...||+|.|.. +.++.+.+..|.|.+++||- . ...+..+.+-++. +..|.|.|.-+
T Consensus 407 l~~~~P~evLLvLDattGq~al------~~ak~f~~~~~itgvIlTKL-D-~takgG~~lsi~~~~~~PI~fig~Ge 475 (503)
T 2yhs_A 407 LDVEAPHEVMLTIDASTGQNAV------SQAKLFHEAVGLTGITLTKL-D-GTAKGGVIFSVADQFGIPIRYIGVGE 475 (503)
T ss_dssp TCTTCSSEEEEEEEGGGTHHHH------HHHHHHHHHTCCSEEEEECG-G-GCSCCTHHHHHHHHHCCCEEEEECSS
T ss_pred hccCCCCeeEEEecCcccHHHH------HHHHHHHhhcCCCEEEEEcC-C-CcccccHHHHHHHHHCCCEEEEecCC
Confidence 64 5574 56555588886554 44556665568999999994 2 3223333333332 33555555443
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.14 E-value=3.5e-11 Score=126.66 Aligned_cols=145 Identities=11% Similarity=0.066 Sum_probs=76.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhC-CCCCCCceeeEEEECCEecCc--cccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLS-QVIDDCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g-~~~~~~~~~G~I~~~G~~~~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
...+.|++ |+|||||+++|++ +..+ ..|++.++|.+... ..+..+++++|.+.+.-..+ +
T Consensus 38 ~~ll~Gp~-----G~GKTtl~~~la~~l~~~---~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~------- 100 (354)
T 1sxj_E 38 HLLLYGPN-----GTGKKTRCMALLESIFGP---GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPS--D------- 100 (354)
T ss_dssp CEEEECST-----TSSHHHHHHTHHHHHSCT---TCCC------------------CCEECSSEEEECCC----------
T ss_pred eEEEECCC-----CCCHHHHHHHHHHHHcCC---CCCeEEecceeecccccccceeeeecccceEEecHh--h-------
Confidence 45555554 8999999999999 6666 37999999987643 23567889988764321111 0
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 208 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~ 208 (622)
... .... .+++.++.+......+... . +|| +..+|+++++|||++ ||+.++.
T Consensus 101 ~~~---~~~~----~~~~~i~~~~~~~~~~~~~-~--------ls~-----------l~~~~~vlilDE~~~-L~~~~~~ 152 (354)
T 1sxj_E 101 MGN---NDRI----VIQELLKEVAQMEQVDFQD-S--------KDG-----------LAHRYKCVIINEANS-LTKDAQA 152 (354)
T ss_dssp ------CCHH----HHHHHHHHHTTTTC--------------------------------CCEEEEEECTTS-SCHHHHH
T ss_pred cCC---cchH----HHHHHHHHHHHhccccccc-c--------ccc-----------cCCCCeEEEEeCccc-cCHHHHH
Confidence 000 0111 1233444432211111111 2 677 788999999999999 9999999
Q ss_pred HHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 209 KLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 209 ~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
.+.+.+.+.. .+.++|+++|++......+.+|.
T Consensus 153 ~L~~~le~~~--~~~~~Il~t~~~~~l~~~l~sR~ 185 (354)
T 1sxj_E 153 ALRRTMEKYS--KNIRLIMVCDSMSPIIAPIKSQC 185 (354)
T ss_dssp HHHHHHHHST--TTEEEEEEESCSCSSCHHHHTTS
T ss_pred HHHHHHHhhc--CCCEEEEEeCCHHHHHHHHHhhc
Confidence 9999999874 46899999999753323333443
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.13 E-value=2.6e-13 Score=128.88 Aligned_cols=136 Identities=10% Similarity=0.100 Sum_probs=85.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc-------ccc-ccEE----EEecCCCCCCCCCH
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-------KFR-SACG----FMYQHDLFSPSLTV 119 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-------~~r-~~ig----yV~Q~~~l~~~lTV 119 (622)
.+.++|+ ||||||||+++|+|+++|.....|+|.++|.++.. .+| +.+| +++|+..++ +
T Consensus 4 ~v~IvG~-----SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~----i 74 (171)
T 2f1r_A 4 ILSIVGT-----SDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF----I 74 (171)
T ss_dssp EEEEEES-----CHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE----E
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE----E
Confidence 4556665 48999999999999998732237999999987421 244 4567 888876654 1
Q ss_pred HHHHHHHHHcCCCccccHHHHHHHHHHHHHH-hCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeE-----
Q psy2519 120 YEHLYFMALLKLDRRVKAYQRIALINSLLIE-LGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALL----- 193 (622)
Q Consensus 120 ~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~-lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lL----- 193 (622)
+| . . .+....++++++. +. ..|+.+++ |||||||||++|||+++.+|++.
T Consensus 75 ~~---------~----~-~~~~a~l~~~i~~~l~---g~dt~i~E-------glSgGq~qri~lARall~~p~i~~~~~~ 130 (171)
T 2f1r_A 75 RR---------V----S-EEEGNDLDWIYERYLS---DYDLVITE-------GFSKAGKDRIVVVKKPEEVEHFRQGRIL 130 (171)
T ss_dssp EE---------C----C-HHHHTCHHHHHHHHTT---TCSEEEEE-------SCGGGCCCEEEECSSGGGGGGGCSSCEE
T ss_pred ec---------C----C-hhhhhCHHHHHHhhCC---CCCEEEEC-------CcCCCCCcEEEEEecccCCCccCccceE
Confidence 11 0 0 1112234566665 43 46777776 39999999999999999999873
Q ss_pred --EEeCCCCC---CCHHHHHHHHHHHHHHHhc
Q psy2519 194 --LCDEPTTG---LDSFSASKLIRMMRELTSQ 220 (622)
Q Consensus 194 --lLDEPTsg---LD~~~~~~i~~~l~~l~~~ 220 (622)
.=|.|..+ +|......+.+.+.+...+
T Consensus 131 a~~~~~~~~~~~~f~~~~~~~~a~~i~~~~~~ 162 (171)
T 2f1r_A 131 AVVCDERVDGHKWFRRDEVERIAEFILSLLRE 162 (171)
T ss_dssp EEECSSCCSSSCEECTTCHHHHHHHHHHHHTC
T ss_pred EEEecCCcccCcccCcccHHHHHHHHHHHHhc
Confidence 22444322 3445567777777766653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.7e-13 Score=144.96 Aligned_cols=165 Identities=15% Similarity=0.168 Sum_probs=117.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCC------------CCCCCceeeEEEECCEecCc-----cccccE---EEE
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQ------------VIDDCIIDGDIRVNGKPVEG-----KFRSAC---GFM 107 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~------------~~~~~~~~G~I~~~G~~~~~-----~~r~~i---gyV 107 (622)
..+..+.++|+| |||||||+|+|+|. ..| .+|.|.++|..+.. ..++.+ .++
T Consensus 18 ~~g~~vgiVG~p-----naGKSTL~n~Ltg~~~a~~~~~p~tTi~p---~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~l 89 (392)
T 1ni3_A 18 GNNLKTGIVGMP-----NVGKSTFFRAITKSVLGNPANYPYATIDP---EEAKVAVPDERFDWLCEAYKPKSRVPAFLTV 89 (392)
T ss_dssp SSCCEEEEEECS-----SSSHHHHHHHHHHSTTTSTTCCSSCCCCT---TEEEEEECCHHHHHHHHHHCCSEEECEEEEE
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHCCCcccccCCCceeecc---eeeeeeeCCcchhhhhhhcccccccCcceEE
Confidence 456677888887 79999999999993 234 58999999865422 123333 467
Q ss_pred ecCCCCCCCCCHHHHH--HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 108 YQHDLFSPSLTVYEHL--YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 108 ~Q~~~l~~~lTV~E~l--~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
.+.+.+.+..+..|++ .|...++. ++.++..++..+ +..+.. +||+.
T Consensus 90 vD~pGl~~~~s~~e~L~~~fl~~ir~------------~d~il~Vvd~~~--d~~i~~--------v~~~~--------- 138 (392)
T 1ni3_A 90 FDIAGLTKGASTGVGLGNAFLSHVRA------------VDAIYQVVRAFD--DAEIIH--------VEGDV--------- 138 (392)
T ss_dssp ECTGGGCCCCCSSSSSCHHHHHHHTT------------CSEEEEEEECCC--TTCSSC--------CSSSS---------
T ss_pred EeccccccCCcHHHHHHHHHHHHHHH------------HHHHHHHHhccc--cceeee--------ecccc---------
Confidence 7888888888877766 44433321 111222222211 233322 66653
Q ss_pred HhhCC--CeEEEeCCCCCCCHHHHHHHHHHHHHH-HhcCCCEEEEEeccCcHHHHhhcccee-eecCC-ceEEecChH
Q psy2519 186 LLTDP--ALLLCDEPTTGLDSFSASKLIRMMREL-TSQRKKTVLCTIHQPSSELIDMFDKII-LLADS-RTAFIGSKD 258 (622)
Q Consensus 186 L~~~P--~lLlLDEPTsgLD~~~~~~i~~~l~~l-~~~~g~tvi~~tH~~~~~i~~~~D~v~-~L~~G-~iv~~G~~~ 258 (622)
+| +++++|||+.++|+....+.++.++++ ++ .|.|++ +|+. .++.++||++. +|.+| ++++.|+.+
T Consensus 139 ---dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~-~g~ti~--sh~~-~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 139 ---DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSR-GANTLE--MKAK-KEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC-SSCSSS--HHHH-HHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred ---CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHh-cCCccc--cccH-HHHHHHHHHHHHHhccCCceeecCCCC
Confidence 89 999999999999999999999999998 65 677864 9995 78899999999 99999 999887654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=7.1e-13 Score=139.35 Aligned_cols=199 Identities=15% Similarity=0.104 Sum_probs=122.2
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcc--cCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCC-ceeeEEEEC
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQ--TASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDC-IIDGDIRVN 92 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~--~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~-~~~G~I~~~ 92 (622)
.+++.++++..| |...+++++++.+..+. .++.+.+++.|+| |+|||||+++|+|.+.... ..+|++..+
T Consensus 17 ~~lr~~~l~~~~--g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~-----G~GKTTLa~~ia~~l~~~~~~~sg~~~~~ 89 (334)
T 1in4_A 17 QFLRPKSLDEFI--GQENVKKKLSLALEAAKMRGEVLDHVLLAGPP-----GLGKTTLAHIIASELQTNIHVTSGPVLVK 89 (334)
T ss_dssp CTTSCSSGGGCC--SCHHHHHHHHHHHHHHHHHTCCCCCEEEESST-----TSSHHHHHHHHHHHHTCCEEEEETTTCCS
T ss_pred HHcCCccHHHcc--CcHHHHHHHHHHHHHHHhcCCCCCeEEEECCC-----CCcHHHHHHHHHHHhCCCEEEEechHhcC
Confidence 346677888764 77677888777662210 1112456666665 8999999999999873211 157777776
Q ss_pred CEecCc---c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCcc-ccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 93 GKPVEG---K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRR-VKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 93 G~~~~~---~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~-~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
|.++.. . .++.++|+.|.+.+.+ ++.|++........... .......+.++..++.++|.. +++.++.
T Consensus 90 ~~~l~~~~~~~~~~~v~~iDE~~~l~~--~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~---- 162 (334)
T 1in4_A 90 QGDMAAILTSLERGDVLFIDEIHRLNK--AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGL---- 162 (334)
T ss_dssp HHHHHHHHHHCCTTCEEEEETGGGCCH--HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGG----
T ss_pred HHHHHHHHHHccCCCEEEEcchhhcCH--HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCccc----
Confidence 665532 1 2567999999887766 78888854433221000 001112234455555566644 5555555
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
||+|+|||+.++ .+||+.+..++.++|++.++..| ++|++ +.+..++++.
T Consensus 163 ----Ls~~l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~-----~~~~~-~~~~~ia~~~---- 212 (334)
T 1in4_A 163 ----LSSPLRSRFGII----------------LELDFYTVKELKEIIKRAASLMD-----VEIED-AAAEMIAKRS---- 212 (334)
T ss_dssp ----SCHHHHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT-----CCBCH-HHHHHHHHTS----
T ss_pred ----CCHHHHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC-----CCcCH-HHHHHHHHhc----
Confidence 999999998655 78899999999999999987555 35774 4566666642
Q ss_pred CCceEEecChHHHHHHH
Q psy2519 248 DSRTAFIGSKDAALAFL 264 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~~~ 264 (622)
.|++..+...+
T Consensus 213 ------~G~~R~a~~ll 223 (334)
T 1in4_A 213 ------RGTPRIAIRLT 223 (334)
T ss_dssp ------TTCHHHHHHHH
T ss_pred ------CCChHHHHHHH
Confidence 36666554433
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-12 Score=121.40 Aligned_cols=88 Identities=14% Similarity=0.073 Sum_probs=70.4
Q ss_pred ccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc
Q psy2519 19 EVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG 98 (622)
Q Consensus 19 ~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~ 98 (622)
+.+|+++. +|+..+++++|+++ ++|+.+.++|+| |||||||+|+|+|++ | .+|+|.++|.++..
T Consensus 9 ~~~~~~~~--~g~~~~l~~vsl~i-----~~Ge~v~L~G~n-----GaGKTTLlr~l~g~l-~---~~G~V~~~g~~i~~ 72 (158)
T 1htw_A 9 PDEFSMLR--FGKKFAEILLKLHT-----EKAIMVYLNGDL-----GAGKTTLTRGMLQGI-G---HQGNVKSPTYTLVE 72 (158)
T ss_dssp CSHHHHHH--HHHHHHHHHHHHCC-----SSCEEEEEECST-----TSSHHHHHHHHHHHT-T---CCSCCCCCTTTCEE
T ss_pred CCHHHHHH--HHHHHHHhcccccc-----CCCCEEEEECCC-----CCCHHHHHHHHHHhC-C---CCCeEEECCEeeee
Confidence 34556666 47778899999998 667777788777 899999999999999 7 48999999988754
Q ss_pred ccc-ccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 99 KFR-SACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 99 ~~r-~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
... +. +++|+..++ .+||.||+.+
T Consensus 73 ~~~~~~--~~~q~~~l~-~ltv~e~l~~ 97 (158)
T 1htw_A 73 EYNIAG--KMIYHFDLY-RLADPEELEF 97 (158)
T ss_dssp EEEETT--EEEEEEECT-TCSCTTHHHH
T ss_pred eccCCC--cceeccccc-cCCcHHHHHH
Confidence 211 22 899998888 9999999965
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.8e-11 Score=128.65 Aligned_cols=170 Identities=13% Similarity=0.119 Sum_probs=98.8
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFS 114 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~ 114 (622)
-+++++++ +.+..+.++|+| ||||||||++|+|..+ .+.+.+.+ .+...+|+|.+++.
T Consensus 147 ~~~i~lel-----k~g~~VgLVG~~-----gAGKSTLL~~Lsg~~~---------~i~~~~ft-Tl~p~~G~V~~~~~-- 204 (416)
T 1udx_A 147 KRRLRLEL-----MLIADVGLVGYP-----NAGKSSLLAAMTRAHP---------KIAPYPFT-TLSPNLGVVEVSEE-- 204 (416)
T ss_dssp EEEEEEEE-----CCSCSEEEECCG-----GGCHHHHHHHHCSSCC---------EECCCTTC-SSCCEEEEEECSSS--
T ss_pred EeeeeeEE-----cCCCEEEEECCC-----CCcHHHHHHHHHcCCc---------cccCcccc-eecceeeEEEecCc--
Confidence 46788888 567788888887 7999999999999843 12222221 12233455554320
Q ss_pred CCCCHHHHHHHH--HHcCCCccccHH--HHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCC
Q psy2519 115 PSLTVYEHLYFM--ALLKLDRRVKAY--QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190 (622)
Q Consensus 115 ~~lTV~E~l~f~--~~l~~~~~~~~~--~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P 190 (622)
..+++.|+.-+. +... ...... ...++++.++..+++. +..+.+ ||+||+|++++|++|+.+|
T Consensus 205 ~~~~l~DtpGli~~a~~~--~~L~~~fl~~~era~~lL~vvDls---~~~~~~--------ls~g~~el~~la~aL~~~P 271 (416)
T 1udx_A 205 ERFTLADIPGIIEGASEG--KGLGLEFLRHIARTRVLLYVLDAA---DEPLKT--------LETLRKEVGAYDPALLRRP 271 (416)
T ss_dssp CEEEEEECCCCCCCGGGS--CCSCHHHHHHHTSSSEEEEEEETT---SCHHHH--------HHHHHHHHHHHCHHHHHSC
T ss_pred ceEEEEeccccccchhhh--hhhhHHHHHHHHHHHhhhEEeCCc---cCCHHH--------HHHHHHHHHHHhHHhhcCC
Confidence 011111110000 0000 001111 0111223334444443 334444 9999999999999999999
Q ss_pred CeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcccee
Q psy2519 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 191 ~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~ 244 (622)
.++++ +++|...+ +..+.+++..++.|.+++.+|......+.++++.+.
T Consensus 272 ~ILVl----NKlDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~eL~~~i~ 320 (416)
T 1udx_A 272 SLVAL----NKVDLLEE-EAVKALADALAREGLAVLPVSALTGAGLPALKEALH 320 (416)
T ss_dssp EEEEE----ECCTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHH
T ss_pred EEEEE----ECCChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHHHHHHHHH
Confidence 99999 99999877 555555555544677777666433456777776654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=3.5e-12 Score=132.21 Aligned_cols=117 Identities=8% Similarity=-0.012 Sum_probs=78.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCcc---cc-ccEEEEecCCCCC-----CC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEGK---FR-SACGFMYQHDLFS-----PS 116 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~~---~r-~~igyV~Q~~~l~-----~~ 116 (622)
.++..+++|+| |||||||+|+|+ +.+| .+|+|.+ +|++.+.. .+ +.+|||+|++.+. +.
T Consensus 164 ~G~i~~l~G~s-----G~GKSTLln~l~-~~~~---~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 164 EGFICILAGPS-----GVGKSSILSRLT-GEEL---RTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp TTCEEEEECST-----TSSHHHHHHHHH-SCCC---CCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGT
T ss_pred cCcEEEEECCC-----CCCHHHHHHHHH-HhhC---cccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCccccc
Confidence 34456666665 899999999999 8888 4899999 99887641 22 3689999988553 78
Q ss_pred CCHHHHH--HHH------HHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccChHHHHHHHHHHH
Q psy2519 117 LTVYEHL--YFM------ALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSGGERKRLSFATE 185 (622)
Q Consensus 117 lTV~E~l--~f~------~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSgGqrqRvsIA~a 185 (622)
+|+ |++ .|+ .+.+. .....+...+++++++.++|.+ ..++++.. |||.++|++.|||+
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~--~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~~--------ls~~~~R~~~~~~~ 301 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPD--CTHTNEPGCAVKEAVKNGEISCERYKSYLKI--------IKVYLEEIKELCRE 301 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTT--CCSSSCTTCHHHHHHHTTSSCHHHHHHHHHH--------TTCCCTTHHHHSSC
T ss_pred CCH-HHHHHHHHHHHHccCCCCC--CCCCCCCCCHHHHHHHcCCCCHHHHHHHHHH--------HHHHHHHHHHHhcc
Confidence 999 888 453 11221 0011223456889999999986 66777655 99988999999874
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=3.8e-13 Score=145.30 Aligned_cols=148 Identities=11% Similarity=0.053 Sum_probs=100.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++++++.+ +...+|+++ + . .+++.++++|+| ||||||||++|+|.+.| .+|+|.+.|.++
T Consensus 143 ~~~l~~Lg~~~--~~~~~L~~l-~-~-----~~ggii~I~Gpn-----GSGKTTlL~allg~l~~---~~g~I~~~ed~i 205 (418)
T 1p9r_A 143 RLDLHSLGMTA--HNHDNFRRL-I-K-----RPHGIILVTGPT-----GSGKSTTLYAGLQELNS---SERNILTVEDPI 205 (418)
T ss_dssp CCCGGGSCCCH--HHHHHHHHH-H-T-----SSSEEEEEECST-----TSCHHHHHHHHHHHHCC---TTSCEEEEESSC
T ss_pred CCCHHHcCCCH--HHHHHHHHH-H-H-----hcCCeEEEECCC-----CCCHHHHHHHHHhhcCC---CCCEEEEecccc
Confidence 57888888875 555566665 2 1 356677777776 89999999999999987 379999998876
Q ss_pred Cc--------cccccEEEEe---------cCCCC--CCC----CCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhC
Q psy2519 97 EG--------KFRSACGFMY---------QHDLF--SPS----LTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELG 152 (622)
Q Consensus 97 ~~--------~~r~~igyV~---------Q~~~l--~~~----lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lg 152 (622)
.. ..++.+|+.+ |++.. ++. .|+.+++.++..-+.. .........+.+ +.+..+|
T Consensus 206 e~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i-~rL~~lg 284 (418)
T 1p9r_A 206 EFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAV-TRLRDMG 284 (418)
T ss_dssp CSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHH-HHHHHHT
T ss_pred hhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHH-HHHHHcC
Confidence 42 2345566655 87654 344 6899999876421100 000000011222 3467788
Q ss_pred CCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEE
Q psy2519 153 LMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLL 194 (622)
Q Consensus 153 L~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLl 194 (622)
+.+.. ...+ |||||+|| ||++|+.+|++..
T Consensus 285 l~~~~--~~~~--------LSgg~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 285 IEPFL--ISSS--------LLGVLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp CCHHH--HHHH--------EEEEEEEE--EEEEECTTTCEEE
T ss_pred CcHHH--HHHH--------HHHHHHHH--hhhhhcCCCCccC
Confidence 87643 4334 99999999 9999999999875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.4e-11 Score=117.21 Aligned_cols=48 Identities=10% Similarity=0.164 Sum_probs=42.2
Q ss_pred hhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH
Q psy2519 187 LTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE 235 (622)
Q Consensus 187 ~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~ 235 (622)
+.+|++|+||||++ ++|+..+..+.+++.+..+ +|+++|++||.+.++
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~-~~~~ii~tsn~~~~~ 146 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYN-NLKSTIITTNYSLQR 146 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHH-TTCEEEEECCCCSCC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHH-cCCCEEEEcCCChhH
Confidence 45899999999985 9999999999999999876 689999999987543
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-11 Score=127.92 Aligned_cols=119 Identities=12% Similarity=0.063 Sum_probs=77.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH----cC---CCcccc
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL----LK---LDRRVK 136 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~----l~---~~~~~~ 136 (622)
||||||||.+.|.+++.+ .| . . ++.+.+|+||+.+++. ++++|+.+... +. .+....
T Consensus 40 sGsGKSTla~~L~~~l~~----~g------~----~-~~~~~iv~~D~f~~~~-~~~~~l~~~~~~~~l~~~~g~p~a~d 103 (290)
T 1odf_A 40 QGSGKSFTSIQIYNHLME----KY------G----G-EKSIGYASIDDFYLTH-EDQLKLNEQFKNNKLLQGRGLPGTHD 103 (290)
T ss_dssp TTSSHHHHHHHHHHHHHH----HH------G----G-GSCEEEEEGGGGBCCH-HHHHHHHHHTTTCGGGSSSCSTTSBC
T ss_pred CCCCHHHHHHHHHHHhhh----cC------C----C-CceEEEeccccccCCh-HHHHHHhccccccchhhhccCcchhH
Confidence 599999999999998875 23 0 1 3456677999888765 88999988631 11 121111
Q ss_pred HHHHHHHHHHHHHHhCCCcc--cCCccCCcCCCCccccChHHHHHHHHH--HHHhhCCCeEEEeCCCCCCCHHH
Q psy2519 137 AYQRIALINSLLIELGLMNS--QHTRIGSSSITQKVVLSGGERKRLSFA--TELLTDPALLLCDEPTTGLDSFS 206 (622)
Q Consensus 137 ~~~~~~~v~~~l~~lgL~~~--~~~~v~~~~~~~~~gLSgGqrqRvsIA--~aL~~~P~lLlLDEPTsgLD~~~ 206 (622)
.+...+.++.+.-.-. ....+.- |..-+.+||||+||+++| +++ +|+|+|+|||++++|+..
T Consensus 104 ----~~~l~~~l~~l~~g~~t~~~~~v~~--p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 104 ----MKLLQEVLNTIFNNNEHPDQDTVVL--PKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp ----HHHHHHHHHHHTC------CCEEEE--CCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred ----HHHHHHHHHHhhccCccccCcceee--ccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 2345566777643200 0000100 222234999999999997 555 999999999999999853
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.99 E-value=1.8e-10 Score=106.70 Aligned_cols=45 Identities=13% Similarity=0.166 Sum_probs=36.6
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE-EEEEeccCcH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT-VLCTIHQPSS 234 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t-vi~~tH~~~~ 234 (622)
.+|++|++|||++ +|...+..+.+++.++.+ .|++ +|+++|.+..
T Consensus 82 ~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~-~g~~~iiits~~~p~ 127 (149)
T 2kjq_A 82 FEAEYLAVDQVEK-LGNEEQALLFSIFNRFRN-SGKGFLLLGSEYTPQ 127 (149)
T ss_dssp GGCSEEEEESTTC-CCSHHHHHHHHHHHHHHH-HTCCEEEEEESSCTT
T ss_pred hCCCEEEEeCccc-cChHHHHHHHHHHHHHHH-cCCcEEEEECCCCHH
Confidence 4689999999998 666568889999999887 5787 8889986533
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.6e-13 Score=150.26 Aligned_cols=180 Identities=9% Similarity=0.077 Sum_probs=106.1
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe-cCccccccEEEEecCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP-VEGKFRSACGFMYQHD 111 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~-~~~~~r~~igyV~Q~~ 111 (622)
++++++++.+ ++++.+.++|+| ||||||||++|+|+++| .+|.|.++|.+ +...-.+.++++.|..
T Consensus 248 ~~l~~l~~~v-----~~g~~i~I~Gpt-----GSGKTTlL~aL~~~i~~---~~giitied~~E~~~~~~~~v~~~~r~~ 314 (511)
T 2oap_1 248 GVLAYLWLAI-----EHKFSAIVVGET-----ASGKTTTLNAIMMFIPP---DAKVVSIEDTREIKLYHENWIAEVTRTG 314 (511)
T ss_dssp HHHHHHHHHH-----HTTCCEEEEEST-----TSSHHHHHHHHGGGSCT---TCCEEEEESSCCCCCCCSSEEEEECBCC
T ss_pred HHHHHHHHHH-----hCCCEEEEECCC-----CCCHHHHHHHHHhhCCC---CCCEEEEcCcccccCCCCCeEEEEeecc
Confidence 4556666666 456677777776 89999999999999988 48999998865 2212234455555543
Q ss_pred C----------------------CCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcc--cCCccCCcCC
Q psy2519 112 L----------------------FSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNS--QHTRIGSSSI 166 (622)
Q Consensus 112 ~----------------------l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~--~~~~v~~~~~ 166 (622)
. +++.++..|++.+......+ ...+.- ....+.++++++..... ....+.. .-
T Consensus 315 ~~~~~~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~-Ha~~~~~~l~Rl~~~~~~v~~~l~~~-l~ 392 (511)
T 2oap_1 315 MGEGEIDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTL-HAGDINQMVYRLESEPLKVPRSMLQF-LD 392 (511)
T ss_dssp SSSCCBCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEE-ECSSHHHHHHHHHSTTTCCCGGGGGG-CC
T ss_pred cccCCcCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCccccc-ccCCHHHHHHHHHhcccccHHHHHhh-cc
Confidence 2 22355555655443222211 000000 00112344444433210 0000000 00
Q ss_pred ---CCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEE--EeccCcHHHHhhcc
Q psy2519 167 ---TQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLC--TIHQPSSELIDMFD 241 (622)
Q Consensus 167 ---~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~--~tH~~~~~i~~~~D 241 (622)
.+.+.+|||||||+++|. + | |+|||+.....+.+.+.++.+ .|.|+++ +||++ +++.+.|+
T Consensus 393 ~vi~~~~~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~-~~~tii~~~~sH~l-~ei~~~~g 458 (511)
T 2oap_1 393 IALVQTMWVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDP-KEDKHIEVSMPKKL-EKMADFLG 458 (511)
T ss_dssp EEEEEEEEESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEET-TTTEEEECSCCTHH-HHHHHHHT
T ss_pred EEEEEEEEEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcc-cCCEEEEcccHHHH-HHHHHHcC
Confidence 112348999999987651 1 7 999999988888888888765 5889985 89995 67776664
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=2.5e-09 Score=114.70 Aligned_cols=63 Identities=13% Similarity=0.103 Sum_probs=48.9
Q ss_pred hCCCeEEEeCCCCCCCHHHH------------HHHHHHHHHHHhcCCCEEEEEeccCc------------------HHHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSA------------SKLIRMMRELTSQRKKTVLCTIHQPS------------------SELI 237 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~------------~~i~~~l~~l~~~~g~tvi~~tH~~~------------------~~i~ 237 (622)
.+|+++++||||+.+|+... .++++.|++++++.|.|||+++|... ..+.
T Consensus 272 ~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~ 351 (400)
T 3lda_A 272 SRFSLIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMA 351 (400)
T ss_dssp SCEEEEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHH
T ss_pred cCCceEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHH
Confidence 46999999999999997543 67889999999877999999999821 2346
Q ss_pred hhccceeeecCCc
Q psy2519 238 DMFDKIILLADSR 250 (622)
Q Consensus 238 ~~~D~v~~L~~G~ 250 (622)
+.+|.++.|++++
T Consensus 352 ~~ad~vl~L~~~~ 364 (400)
T 3lda_A 352 YSSTTRLGFKKGK 364 (400)
T ss_dssp HHCSEEEEEEECS
T ss_pred HhcceEEEEEecC
Confidence 7789999998764
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.87 E-value=8.4e-11 Score=121.74 Aligned_cols=100 Identities=6% Similarity=0.012 Sum_probs=64.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCcc---c-cccEEEEecCCC---------
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEGK---F-RSACGFMYQHDL--------- 112 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~~---~-r~~igyV~Q~~~--------- 112 (622)
.++...++|+| |||||||||+|+|+.+| .+|+|.+ +|++++.. . .+.+|||+|++.
T Consensus 168 ~geiv~l~G~s-----G~GKSTll~~l~g~~~~---~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 168 KGKISTMAGLS-----GVGKSSLLNAINPGLKL---RVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp SSSEEEEECST-----TSSHHHHHHHHSTTCCC---C-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSS
T ss_pred cCCeEEEECCC-----CCcHHHHHHHhcccccc---cccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcC
Confidence 34556666665 89999999999999998 4899999 99887641 1 246899999864
Q ss_pred -------CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-cccCCccCC
Q psy2519 113 -------FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-NSQHTRIGS 163 (622)
Q Consensus 113 -------l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-~~~~~~v~~ 163 (622)
++|.+|+ ||+.|+. ... ..+...+++++++.+||. +..++++..
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~-~~~-----~~e~~~~v~~~l~~~~L~~~~~~~~~~~ 291 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSD-CNH-----VDEPECGVKEAVENGEIAESRYENYVKM 291 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTT-CCS-----SSCSSCHHHHHHHHTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCC-CcC-----CCCCCcHHHHHHHcCCCCHHHHHHHHHH
Confidence 6899999 9998853 211 112345688999999995 666666444
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=3.5e-11 Score=125.04 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=79.1
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEE--------------EEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLV--------------IMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~--------------~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
..++.++++||++.| + ++++++++.+ ..+..++++.+.|+|+| |||||||+++|+|+
T Consensus 33 ~~~~~i~~~~v~~~y--~--~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~-----GsGKSTl~~~L~~~ 103 (308)
T 1sq5_A 33 GINEDLSLEEVAEIY--L--PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSV-----AVGKSTTARVLQAL 103 (308)
T ss_dssp HHCTTCCHHHHHHTH--H--HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECT-----TSSHHHHHHHHHHH
T ss_pred CCccccchHhHHHHH--H--HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCC-----CCCHHHHHHHHHHH
Confidence 456789999999998 2 5777877654 00112355666777666 89999999999998
Q ss_pred CC--CCCceeeEEEE---CCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcC
Q psy2519 79 VI--DDCIIDGDIRV---NGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLK 130 (622)
Q Consensus 79 ~~--~~~~~~G~I~~---~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~ 130 (622)
+. | .+|+|.+ +|.......++.+|++ |+..+++.+|+.+++.+...++
T Consensus 104 l~~~~---~~G~i~vi~~d~~~~~~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l~ 156 (308)
T 1sq5_A 104 LSRWP---EHRRVELITTDGFLHPNQVLKERGLM-KKKGFPESYDMHRLVKFVSDLK 156 (308)
T ss_dssp HTTST---TCCCEEEEEGGGGBCCHHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHHT
T ss_pred HhhCC---CCCeEEEEecCCccCcHHHHHhCCEe-ecCCCCCCccHHHHHHHHHHHh
Confidence 87 7 4899999 8877644445668888 8778889999999998876554
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.5e-12 Score=133.10 Aligned_cols=142 Identities=9% Similarity=0.103 Sum_probs=94.5
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEE
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACG 105 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~ig 105 (622)
+...+++++++.+ +.| +++.|+| |||||||+++|+|...+ |.|.++|.++.. +.++.++
T Consensus 31 ~~~~~l~~~~l~~------~~G-vlL~Gp~-----GtGKTtLakala~~~~~-----~~i~i~g~~l~~~~~~~~~~~i~ 93 (274)
T 2x8a_A 31 RNPDQFKALGLVT------PAG-VLLAGPP-----GCGKTLLAKAVANESGL-----NFISVKGPELLNMYVGESERAVR 93 (274)
T ss_dssp HSHHHHHHTTCCC------CSE-EEEESST-----TSCHHHHHHHHHHHTTC-----EEEEEETTTTCSSTTHHHHHHHH
T ss_pred hCHHHHHHcCCCC------CCe-EEEECCC-----CCcHHHHHHHHHHHcCC-----CEEEEEcHHHHhhhhhHHHHHHH
Confidence 4455677777766 333 6666665 89999999999998765 789999987743 2356788
Q ss_pred EEecCC-CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHH
Q psy2519 106 FMYQHD-LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184 (622)
Q Consensus 106 yV~Q~~-~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~ 184 (622)
++||+. ...|.+++.|++......+. .. ..+ .+.+..++.+.. |||||+||+.|++
T Consensus 94 ~vf~~a~~~~p~i~~~Deid~~~~~r~-----~~----~~~------~~~~~~~~~l~~--------Lsgg~~~~~~i~i 150 (274)
T 2x8a_A 94 QVFQRAKNSAPCVIFFDEVDALCPRRS-----DR----ETG------ASVRVVNQLLTE--------MDGLEARQQVFIM 150 (274)
T ss_dssp HHHHHHHHTCSEEEEEETCTTTCC------------------------CTTHHHHHHHH--------HHTCCSTTCEEEE
T ss_pred HHHHHHHhcCCCeEeeehhhhhhcccC-----CC----cch------HHHHHHHHHHHh--------hhcccccCCEEEE
Confidence 899874 56777788887755321110 00 000 122233444444 9999999999999
Q ss_pred HHhhCCCeEEEeCCCC------------CCCHHHHHHHHHH
Q psy2519 185 ELLTDPALLLCDEPTT------------GLDSFSASKLIRM 213 (622)
Q Consensus 185 aL~~~P~lLlLDEPTs------------gLD~~~~~~i~~~ 213 (622)
++..+|++| |||+. --|...+.+|++.
T Consensus 151 a~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~il~~ 189 (274)
T 2x8a_A 151 AATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLAILKT 189 (274)
T ss_dssp EEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHHHHHH
T ss_pred eecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHHHHHH
Confidence 999999986 88853 2355566555544
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.8e-10 Score=116.02 Aligned_cols=115 Identities=15% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE---CCEecCc--c-ccccEEEEecCCCCCC----CC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV---NGKPVEG--K-FRSACGFMYQHDLFSP----SL 117 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~---~G~~~~~--~-~r~~igyV~Q~~~l~~----~l 117 (622)
.+|+.++++|+| |||||||+|+|+|...+ .+|+|.+ +|+..+. . ++..+|||+|.+.+.+ .+
T Consensus 171 ~~G~~~~lvG~s-----G~GKSTLln~L~g~~~~---~~G~I~~~~~~G~~tt~~~~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 171 FQDKTTVFAGQS-----GVGKSSLLNAISPELGL---RTNEISEHLGRGKHTTRHVELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GTTSEEEEEESH-----HHHHHHHHHHHCC----------------------CCCCCEEEETTEEEESSCSCSSCCCTTC
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHhcccccc---cccceeeecCCCcccccHHHHhhcCCEEEecCCCccccccccC
Confidence 356677777776 89999999999999988 5899999 8887754 2 2222799999987665 68
Q ss_pred CHHHHHH--HHHH--c----CCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHH
Q psy2519 118 TVYEHLY--FMAL--L----KLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179 (622)
Q Consensus 118 TV~E~l~--f~~~--l----~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqR 179 (622)
|+ |++. |... + +........+....++++++.++|.+.+...... ++.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~r~~~y~~--------lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQYRYDHYVE--------FMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH--------HHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHHHHHHHHH--------HHHHHhhc
Confidence 99 8883 4310 1 1100001112234678999999998754444333 77788773
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.69 E-value=9.7e-11 Score=114.35 Aligned_cols=163 Identities=11% Similarity=0.005 Sum_probs=86.3
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
++++.+.|+|+| |||||||+++|+|++.|. | ..+|+|++++..++. +..+++....
T Consensus 20 ~~g~~v~I~G~s-----GsGKSTl~~~l~~~~~~~----g--------------~~~g~v~~d~~~~~~-~~~~~~~~~~ 75 (208)
T 3c8u_A 20 PGRQLVALSGAP-----GSGKSTLSNPLAAALSAQ----G--------------LPAEVVPMDGFHLDN-RLLEPRGLLP 75 (208)
T ss_dssp CSCEEEEEECCT-----TSCTHHHHHHHHHHHHHT----T--------------CCEEEEESGGGBCCH-HHHGGGTCGG
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHhhc----C--------------CceEEEecCCCcCCH-HHHHHhcccc
Confidence 355666677665 899999999999998752 2 124555554433321 1222211000
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHH-HHHhhCCCeEEEeCCCCCCCHHH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFA-TELLTDPALLLCDEPTTGLDSFS 206 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA-~aL~~~P~lLlLDEPTsgLD~~~ 206 (622)
....+..... ....+.+..+...+..+....+ ...++|+||+||+++| ++++.++.++++|||..
T Consensus 76 ~~~~~~~~~~----~~~~~~l~~l~~~~~i~~p~~d----~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~------ 141 (208)
T 3c8u_A 76 RKGAPETFDF----EGFQRLCHALKHQERVIYPLFD----RARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW------ 141 (208)
T ss_dssp GTTSGGGBCH----HHHHHHHHHHHHCSCEEEEEEE----TTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG------
T ss_pred cCCCCchhhH----HHHHHHHHHHhcCCceecccCC----ccccCCCCCceEEcCCCcEEEECCceeccCCchh------
Confidence 0001111111 1122333333222212222222 1234899999999998 88889998888999841
Q ss_pred HHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHHHHHHH
Q psy2519 207 ASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALAFL 264 (622)
Q Consensus 207 ~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~~~~~~ 264 (622)
.++.+ .--.++.+.++....+.+...|. +..|+ +.+++.+.+
T Consensus 142 --------~~l~~-~~d~~i~vd~~~~~~~~R~~~R~--~~~g~-----t~~~~~~~~ 183 (208)
T 3c8u_A 142 --------RDLTA-IWDVSIRLEVPMADLEARLVQRW--LDHGL-----NHDAAVARA 183 (208)
T ss_dssp --------GGGGG-TCSEEEEECCCHHHHHHHHHHHH--HHTTC-----CHHHHHHHH
T ss_pred --------HHHHH-hcCEEEEEeCCHHHHHHHHHHHH--HhcCC-----CHHHHHHHH
Confidence 11122 22367778887544466667663 34554 455555433
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.1e-08 Score=101.33 Aligned_cols=61 Identities=18% Similarity=0.123 Sum_probs=48.2
Q ss_pred hCCCeEEEeCCCCCC--CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHH-------HHhhccceeeecC
Q psy2519 188 TDPALLLCDEPTTGL--DSFSASKLIRMMRELTSQRKKTVLCTIHQPSSE-------LIDMFDKIILLAD 248 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL--D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~-------i~~~~D~v~~L~~ 248 (622)
.+|+++++|||+..+ |+....+.+..+.+++++.|.|||+++|..... +.+.+|.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 589999999999988 665667777777777766899999999985421 4678899999964
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.61 E-value=2e-07 Score=101.87 Aligned_cols=100 Identities=10% Similarity=0.071 Sum_probs=71.7
Q ss_pred HHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCC--------HHHHHHHH
Q psy2519 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL--TDPALLLCDEPTTGLD--------SFSASKLI 211 (622)
Q Consensus 142 ~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD--------~~~~~~i~ 211 (622)
+++.+.++.++..+..-...+ ++|.+|.+ +.++.++ .+|+++++|+++...+ .....++.
T Consensus 274 ~~~~~a~~~l~~~~l~i~d~~--------~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~ 343 (454)
T 2r6a_A 274 GKLTMAMGSLSNAGIYIDDTP--------SIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEIS 343 (454)
T ss_dssp HHHHHHHHHHHSSCEEEECCT--------TCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHH
T ss_pred HHHHHHHHHHhcCCEEEECCC--------CCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHH
Confidence 455566666654332211112 28999987 5677776 6899999999998774 33447788
Q ss_pred HHHHHHHhcCCCEEEEEec---------c--Cc-------HHHHhhccceeeecCCce
Q psy2519 212 RMMRELTSQRKKTVLCTIH---------Q--PS-------SELIDMFDKIILLADSRT 251 (622)
Q Consensus 212 ~~l~~l~~~~g~tvi~~tH---------~--~~-------~~i~~~~D~v~~L~~G~i 251 (622)
+.|++++++.|.+||+++| + |. ..+.+.+|.|++|..++.
T Consensus 344 ~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 344 RSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 8899999878999999999 2 31 147788999999987764
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.57 E-value=6.8e-12 Score=121.84 Aligned_cols=57 Identities=14% Similarity=0.270 Sum_probs=43.5
Q ss_pred HHH-HHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 182 FAT-ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 182 IA~-aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
.++ +++.+|++++|||||+++|..+..++.+.|.+..++ +...|.+ ..+|+|+++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~-----~~~a~~~-----~~~D~iivnd~ 173 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD-----MESSKEP-----GLFDLVIINDD 173 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH-----TTGGGST-----TTCSEEEECSS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-----HHHhhcc-----CCceEEEECCC
Confidence 445 677888888999999999999999999999888763 2344631 56899888753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-09 Score=117.55 Aligned_cols=157 Identities=14% Similarity=0.027 Sum_probs=90.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhC--CCCCCCceeeEEEECCEecCc-cccccEEEEecCCCCCCCC--CHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLS--QVIDDCIIDGDIRVNGKPVEG-KFRSACGFMYQHDLFSPSL--TVYEHL 123 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g--~~~~~~~~~G~I~~~G~~~~~-~~r~~igyV~Q~~~l~~~l--TV~E~l 123 (622)
++...++.|.+ ||||||+|+.|.. +.+. ..|++.+.+.|... + ++....+|++ +|.++.
T Consensus 166 ~~pHlLIaG~T-----GSGKSt~L~~li~sLl~~~---~p~~v~l~liDpK~~e--------l~~~~~lPhl~~~Vvtd~ 229 (512)
T 2ius_A 166 KMPHLLVAGTT-----GSGASVGVNAMILSMLYKA---QPEDVRFIMIDPKMLE--------LSVYEGIPHLLTEVVTDM 229 (512)
T ss_dssp GSCSEEEECCT-----TSSHHHHHHHHHHHHHTTC---CTTTEEEEEECCSSSG--------GGGGTTCTTBSSSCBCSH
T ss_pred cCceEEEECCC-----CCCHHHHHHHHHHHHHHhC---CCceEEEEEECCchhh--------hhhhccCCcccceeecCH
Confidence 34566666554 8999999999875 3333 24677666665432 1 1211222332 233333
Q ss_pred HHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCC--ccCCcCCCCccccChHHHHHH----------HHHHHHhhCCC
Q psy2519 124 YFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHT--RIGSSSITQKVVLSGGERKRL----------SFATELLTDPA 191 (622)
Q Consensus 124 ~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~--~v~~~~~~~~~gLSgGqrqRv----------sIA~aL~~~P~ 191 (622)
..+...- .....+.++| .++++..|+.+..+. .+.. .+|+||+||. .+|+++...|.
T Consensus 230 ~~a~~~L---~~~~~EmerR-~~ll~~~Gv~~i~~yn~~~~~-------~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 230 KDAANAL---RWCVNEMERR-YKLMSALGVRNLAGYNEKIAE-------ADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH---HHHHHHHHHH-HHHHHHTTCSSHHHHHHHHHH-------HHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH---HHHHHHHHHH-HHHHHHcCCccHHHHHHHHHH-------HhhcCCcccccccccccchhccccccccCCc
Confidence 2222110 0112333344 377888888764321 1111 2889988753 35666778898
Q ss_pred -eEEEeCCCCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEeccCc
Q psy2519 192 -LLLCDEPTTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQPS 233 (622)
Q Consensus 192 -lLlLDEPTsgLD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~~ 233 (622)
++++||++.-+|.. ..++.+.+.+++ +..|.++|++||.|+
T Consensus 299 ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 78999999988833 345555555554 434789999999985
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=2e-08 Score=96.19 Aligned_cols=44 Identities=16% Similarity=0.086 Sum_probs=36.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMREL 217 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l 217 (622)
|..-..+++.+|++++.+|+++++| ||++|.....++++.|.+.
T Consensus 146 l~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~~ 189 (191)
T 1oix_A 146 LRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILTE 189 (191)
T ss_dssp GGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred cccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHHH
Confidence 4433344578999999999999999 9999999999999988763
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.48 E-value=3.8e-11 Score=122.60 Aligned_cols=132 Identities=10% Similarity=0.055 Sum_probs=83.6
Q ss_pred CCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--
Q psy2519 21 PNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG-- 98 (622)
Q Consensus 21 ~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~-- 98 (622)
+++.+.| +...+++++++++ +.+ ++++|+| |||||||+++|++... .|.|.++|.++..
T Consensus 53 ~~l~~~~--~~~~~l~~~~~~~------~~g-vll~Gp~-----GtGKTtl~~~i~~~~~-----~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 53 KEIVEFL--KNPSRFHEMGARI------PKG-VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDFVEMF 113 (278)
T ss_dssp HHHHHHH--HCHHHHHHTTCCC------CCE-EEEECCT-----TSSHHHHHHHHHHHTT-----CCEEEEEHHHHHHST
T ss_pred HHHHHHH--HCHHHHHHcCCCC------CCe-EEEECCC-----cChHHHHHHHHHHHcC-----CCEEEecHHHHHHHH
Confidence 3444433 3345566777666 233 6666665 8999999999999875 5899999877533
Q ss_pred --cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 99 --KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 99 --~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
..++.+++++|+. ...|.+++.|++......+... .....+..+.+.+++ .. |||
T Consensus 114 ~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll-------------~~--------lsg 172 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL-------------VE--------MDG 172 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH-------------HH--------HTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH-------------HH--------HhC
Confidence 2345577888875 3677888888885433221100 000112222333332 22 999
Q ss_pred HHHHHHHHHHHHhhCCCe
Q psy2519 175 GERKRLSFATELLTDPAL 192 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~l 192 (622)
||+||+.+++++..+|++
T Consensus 173 g~~~~~~i~~a~t~~p~~ 190 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDI 190 (278)
T ss_dssp CCTTCCEEEEEEESCTTS
T ss_pred CCCCCCEEEEEecCCchh
Confidence 999999999999999976
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=5.6e-11 Score=119.44 Aligned_cols=140 Identities=11% Similarity=0.098 Sum_probs=89.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+.+++++.+.| +...+++++++++ +.+ +.+.|+| |+|||||+++|++... .|.|.++|.++
T Consensus 25 ~~~l~~l~~~~--~~~~~~~~~~~~~------~~g-~ll~G~~-----G~GKTtl~~~i~~~~~-----~~~i~~~~~~~ 85 (254)
T 1ixz_A 25 KEELKEIVEFL--KNPSRFHEMGARI------PKG-VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDF 85 (254)
T ss_dssp HHHHHHHHHHH--HCHHHHHHTTCCC------CSE-EEEECCT-----TSSHHHHHHHHHHHTT-----CCEEEEEHHHH
T ss_pred HHHHHHHHHHH--HCHHHHHHcCCCC------CCe-EEEECCC-----CCCHHHHHHHHHHHhC-----CCEEEeeHHHH
Confidence 34566666654 4445677777766 233 6666665 8999999999999875 58899988765
Q ss_pred Cc----cccccEEEEecCC-CCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCcc
Q psy2519 97 EG----KFRSACGFMYQHD-LFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~-~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~ 170 (622)
.. ..++.+++++|+. ...|.+++.|++......+... .....+..+.+.+++. .
T Consensus 86 ~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~-------------~------- 145 (254)
T 1ixz_A 86 VEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV-------------E------- 145 (254)
T ss_dssp HHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHH-------------H-------
T ss_pred HHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHH-------------H-------
Confidence 32 2345577888874 3667788888884432221100 0011122223333332 2
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCC
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEP 198 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEP 198 (622)
|||||+||+.+++++..+|++ +|++
T Consensus 146 -l~g~~~~~~~i~~a~t~~p~~--ld~~ 170 (254)
T 1ixz_A 146 -MDGFEKDTAIVVMAATNRPDI--LDPA 170 (254)
T ss_dssp -HHTCCTTCCEEEEEEESCGGG--SCGG
T ss_pred -HhCCCCCCCEEEEEccCCchh--CCHH
Confidence 999999999999999999987 4544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=4.2e-07 Score=93.63 Aligned_cols=141 Identities=9% Similarity=0.084 Sum_probs=86.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
+++.+.++|+| ||||||+++.|++...+. +| ++++++.+|.. ..++.|++...+.
T Consensus 104 ~g~vi~lvG~~-----GsGKTTl~~~LA~~l~~~---~G--------------~~V~lv~~D~~---r~~a~eqL~~~~~ 158 (296)
T 2px0_A 104 HSKYIVLFGST-----GAGKTTTLAKLAAISMLE---KH--------------KKIAFITTDTY---RIAAVEQLKTYAE 158 (296)
T ss_dssp CSSEEEEEEST-----TSSHHHHHHHHHHHHHHT---TC--------------CCEEEEECCCS---STTHHHHHHHHHT
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHHHHHh---cC--------------CEEEEEecCcc---cchHHHHHHHHHH
Confidence 45566666665 899999999999988752 35 24666666542 3355565544321
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSAS 208 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~ 208 (622)
..|+.... . .+. +.-+.+++ .+.+|+++|+| |+|+|+....
T Consensus 159 ---------------------~~gl~~~~-----~--------~~~-~~l~~al~--~~~~~dlvIiD--T~G~~~~~~~ 199 (296)
T 2px0_A 159 ---------------------LLQAPLEV-----C--------YTK-EEFQQAKE--LFSEYDHVFVD--TAGRNFKDPQ 199 (296)
T ss_dssp ---------------------TTTCCCCB-----C--------SSH-HHHHHHHH--HGGGSSEEEEE--CCCCCTTSHH
T ss_pred ---------------------hcCCCeEe-----c--------CCH-HHHHHHHH--HhcCCCEEEEe--CCCCChhhHH
Confidence 12222110 0 122 23355555 45999999999 9999987765
Q ss_pred HHHHHHHHHH--hcCCCEEEE-EeccCcHHHHhhccceeeecCCceEEe
Q psy2519 209 KLIRMMRELT--SQRKKTVLC-TIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 209 ~i~~~l~~l~--~~~g~tvi~-~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
.+.++.+-+. ...+.++++ ++|+. .++.+.++++..+..+.++..
T Consensus 200 ~~~el~~~l~~~~~~~~~lVl~at~~~-~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 200 YIDELKETIPFESSIQSFLVLSATAKY-EDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHHHHHHSCCCTTEEEEEEEETTBCH-HHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHHHHHHhhcCCCeEEEEEECCCCH-HHHHHHHHHHhcCCCCEEEEe
Confidence 5554443332 112334555 48884 678888998887777777763
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.42 E-value=1.2e-07 Score=98.00 Aligned_cols=108 Identities=10% Similarity=0.134 Sum_probs=73.1
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHHHHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~ 128 (622)
+++.+.++|+| ||||||+++.|++.+.+. .|+|.+.+.|..+ . + ..|
T Consensus 103 ~~~vi~ivG~~-----GsGKTTl~~~LA~~l~~~---g~kV~lv~~D~~r---~--~-------------a~e------- 149 (306)
T 1vma_A 103 PPFVIMVVGVN-----GTGKTTSCGKLAKMFVDE---GKSVVLAAADTFR---A--A-------------AIE------- 149 (306)
T ss_dssp SCEEEEEECCT-----TSSHHHHHHHHHHHHHHT---TCCEEEEEECTTC---H--H-------------HHH-------
T ss_pred CCeEEEEEcCC-----CChHHHHHHHHHHHHHhc---CCEEEEEcccccc---H--H-------------HHH-------
Confidence 44455666654 899999999999998763 5788876665321 0 0 011
Q ss_pred cCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH---HHHHHHhhCCCeEEEeCCCCCCCHH
Q psy2519 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL---SFATELLTDPALLLCDEPTTGLDSF 205 (622)
Q Consensus 129 l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv---sIA~aL~~~P~lLlLDEPTsgLD~~ 205 (622)
....+.+.+++.. +.. .|||+.+++ ++++++..+|+++++|||.. ..
T Consensus 150 --------------qL~~~~~~~gl~~-----~~~--------~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~ 199 (306)
T 1vma_A 150 --------------QLKIWGERVGATV-----ISH--------SEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LH 199 (306)
T ss_dssp --------------HHHHHHHHHTCEE-----ECC--------STTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CS
T ss_pred --------------HHHHHHHHcCCcE-----Eec--------CCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hh
Confidence 1223445566542 222 789999999 99999999999999999974 34
Q ss_pred HHHHHHHHHHHHHh
Q psy2519 206 SASKLIRMMRELTS 219 (622)
Q Consensus 206 ~~~~i~~~l~~l~~ 219 (622)
....+++.++++.+
T Consensus 200 ~~~~l~~eL~~l~~ 213 (306)
T 1vma_A 200 TKKNLMEELRKVHR 213 (306)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHH
Confidence 55566666666543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.32 E-value=1e-08 Score=116.02 Aligned_cols=166 Identities=13% Similarity=0.046 Sum_probs=99.3
Q ss_pred ccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccE
Q psy2519 25 FSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSAC 104 (622)
Q Consensus 25 ~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~i 104 (622)
+...+|..++++.+++.+ .+++.+.+.|++ |+|||||+++|++...+. .-|.+.+++.+... ....+
T Consensus 40 l~~i~G~~~~l~~l~~~i-----~~g~~vll~Gp~-----GtGKTtlar~ia~~l~~~--~~~~~~~~~~~~~~-~~p~i 106 (604)
T 3k1j_A 40 IDQVIGQEHAVEVIKTAA-----NQKRHVLLIGEP-----GTGKSMLGQAMAELLPTE--TLEDILVFPNPEDE-NMPRI 106 (604)
T ss_dssp HHHCCSCHHHHHHHHHHH-----HTTCCEEEECCT-----TSSHHHHHHHHHHTSCCS--SCEEEEEECCTTCT-TSCEE
T ss_pred cceEECchhhHhhccccc-----cCCCEEEEEeCC-----CCCHHHHHHHHhccCCcc--cCCeEEEeCCcccc-cCCcE
Confidence 333457777888888777 456666666665 899999999999999874 34889988876643 34568
Q ss_pred EEEecCC----------------------CCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccC
Q psy2519 105 GFMYQHD----------------------LFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIG 162 (622)
Q Consensus 105 gyV~Q~~----------------------~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~ 162 (622)
++++|.. ..++.+++.+|+.....-..+...-.. .. ...-+.+|..+.....
T Consensus 107 ~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~---~~~~~L~G~~~~~~~~-- 180 (604)
T 3k1j_A 107 KTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TG---AHAGALLGDVRHDPFQ-- 180 (604)
T ss_dssp EEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TT---CCHHHHHCEECCCCC---
T ss_pred EEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CC---CCHHhcCceEEechhh--
Confidence 8988753 111222222222110000000000000 00 0011222221111111
Q ss_pred CcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHH
Q psy2519 163 SSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRE 216 (622)
Q Consensus 163 ~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~ 216 (622)
..++|+|++|++..++....++.+|++||... |++.....+.+.|.+
T Consensus 181 ------~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 181 ------SGGLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp ---------CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred ------cCCccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 23499999999999999999999999999988 899888888877764
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.29 E-value=7.5e-07 Score=93.90 Aligned_cols=79 Identities=15% Similarity=0.132 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhC--CCeEEEeCCCCCC----------CH---HHHHHHHHHHHHH---HhcCCCEEEEEeccCcH-----
Q psy2519 178 KRLSFATELLTD--PALLLCDEPTTGL----------DS---FSASKLIRMMREL---TSQRKKTVLCTIHQPSS----- 234 (622)
Q Consensus 178 qRvsIA~aL~~~--P~lLlLDEPTsgL----------D~---~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~----- 234 (622)
+-+.++++++.+ |+++++|||++.+ |+ ..++.+.+.++++ +++.|.|||+++|....
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 345678888755 9999999999998 33 2333445555555 35579999999996421
Q ss_pred ----------HHHhhccceeeecCCceEEecC
Q psy2519 235 ----------ELIDMFDKIILLADSRTAFIGS 256 (622)
Q Consensus 235 ----------~i~~~~D~v~~L~~G~iv~~G~ 256 (622)
.+...+|.++.++.+++...|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 2567899999888777665554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.7e-10 Score=111.88 Aligned_cols=200 Identities=8% Similarity=-0.055 Sum_probs=77.0
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHh-CCCCCCCceeeEEEECCEecCccccccEEEEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFL-SQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQH 110 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~-g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~ 110 (622)
.+..+++|+++ .+|+.++++|+| |||||||+++|+ |+.++ ..+.+.+..++........++|++++
T Consensus 14 ~~~~~~~sl~v-----~~G~ii~l~Gp~-----GsGKSTl~~~L~~~~~~~---~~~~~~~~~~~~~~g~~~g~~~~~~~ 80 (231)
T 3lnc_A 14 AQTQGPGSMLK-----SVGVILVLSSPS-----GCGKTTVANKLLEKQKNN---IVKSVSVTTRAARKGEKEGKDYYFVD 80 (231)
T ss_dssp --------CCE-----ECCCEEEEECSC-----C----CHHHHHHC----C---EEECCCEESSCCCTTCCBTTTBEECC
T ss_pred hcccCCCCccc-----CCCCEEEEECCC-----CCCHHHHHHHHHhcCCCC---cccccccCCCCCCccccCCCeEEEec
Confidence 45577889988 466677777666 899999999999 98754 12222111111111112234577776
Q ss_pred CCCCCCCCHHHHHHHHHHcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHH-HHH-HHHh
Q psy2519 111 DLFSPSLTVYEHLYFMALLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRL-SFA-TELL 187 (622)
Q Consensus 111 ~~l~~~lTV~E~l~f~~~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRv-sIA-~aL~ 187 (622)
...++.+++.+++......... ..... +.++++++.-. .-..+-.+. -...-+++. .-+ ..++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~i~~~~~~~~-~vild~~~~---------g~~~~~~~~~~~~~~v~v 146 (231)
T 3lnc_A 81 REEFLRLCSNGEIIEHAEVFGNFYGVPR----KNLEDNVDKGV-STLLVIDWQ---------GAFKFMEMMREHVVSIFI 146 (231)
T ss_dssp HHHHHHHHHTTCEEEEEEETTEEEEEEC----TTHHHHHHHTC-EEEEECCHH---------HHHHHHHHSGGGEEEEEE
T ss_pred HHHhhhhhhcCceehhhhhccccCCCCH----HHHHHHHHcCC-eEEEEcCHH---------HHHHHHHhcCCCeEEEEE
Confidence 5444444443333211111100 00111 11333343311 001111000 011223333 111 2335
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc----CCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ----RKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~----~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 259 (622)
..|+...+||++.+.|..+..++.+.+++...+ ....+|++.|++ +++.+..++++-..+++..+.++.++
T Consensus 147 ~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~-e~~~~~l~~~i~~~~~~~~~~~~~~~ 221 (231)
T 3lnc_A 147 MPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDI-EETADRISNILRAEQMKTCRQVGLRE 221 (231)
T ss_dssp ECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSH-HHHHHHHHHHHHHHHTBGGGEESHHH
T ss_pred ECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCH-HHHHHHHHHHHHHHhhccccCcchhh
Confidence 677777888999999988877777666654321 234677777774 56666666666555555555444443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.1e-06 Score=88.33 Aligned_cols=133 Identities=12% Similarity=-0.021 Sum_probs=85.0
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
..++++++.| ++.. ++++++ +++.+.++|+| |+||||++..|++...+ ..|+|.+.+.+..
T Consensus 77 ~~~~~l~~~~--~~~~--~~i~~~-------~~~~i~i~g~~-----G~GKTT~~~~la~~~~~---~~~~v~l~~~d~~ 137 (295)
T 1ls1_A 77 TVYEALKEAL--GGEA--RLPVLK-------DRNLWFLVGLQ-----GSGKTTTAAKLALYYKG---KGRRPLLVAADTQ 137 (295)
T ss_dssp HHHHHHHHHT--TSSC--CCCCCC-------SSEEEEEECCT-----TTTHHHHHHHHHHHHHH---TTCCEEEEECCSS
T ss_pred HHHHHHHHHH--CCCC--ceeecC-------CCeEEEEECCC-----CCCHHHHHHHHHHHHHH---cCCeEEEecCCcc
Confidence 3456777765 3322 344442 34556666544 89999999999999876 3688888776543
Q ss_pred ccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHH
Q psy2519 98 GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGER 177 (622)
Q Consensus 98 ~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqr 177 (622)
+... .+.+ ..+.+..++....... +-.-.+.
T Consensus 138 ~~~~------------------~~ql---------------------~~~~~~~~l~~~~~~~----------~~~p~~l 168 (295)
T 1ls1_A 138 RPAA------------------REQL---------------------RLLGEKVGVPVLEVMD----------GESPESI 168 (295)
T ss_dssp CHHH------------------HHHH---------------------HHHHHHHTCCEEECCT----------TCCHHHH
T ss_pred cHhH------------------HHHH---------------------HHhcccCCeEEEEcCC----------CCCHHHH
Confidence 2100 0000 0112334554321110 0233455
Q ss_pred HHHHHHHHHhhCCCeEEEeCC-CCCCCHHHHHHHHHHHHHHH
Q psy2519 178 KRLSFATELLTDPALLLCDEP-TTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 178 qRvsIA~aL~~~P~lLlLDEP-TsgLD~~~~~~i~~~l~~l~ 218 (622)
+|.+++.+...+++++|+||| +.++|.....++.+..+.+.
T Consensus 169 ~~~~l~~~~~~~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~ 210 (295)
T 1ls1_A 169 RRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLG 210 (295)
T ss_dssp HHHHHHHHHHHTCCEEEEECCCCSSCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCCCCEEEEeCCCCccccHHHHHHHHHHhhhcC
Confidence 789999998899999999999 99999988888888877763
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.10 E-value=4.6e-07 Score=96.07 Aligned_cols=144 Identities=16% Similarity=0.129 Sum_probs=84.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCC--------CceeeEEEECCEecCccccccEEEEecCCCCCCCCCHHH---
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDD--------CIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYE--- 121 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~--------~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~l~~~lTV~E--- 121 (622)
++++|.+ |||||||+|.|+|..... ...+|+|.++|.++. +....|++.|.+ ...|..
T Consensus 182 V~lvG~~-----naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~--l~DT~G~i~~lp----~~lve~f~~ 250 (364)
T 2qtf_A 182 IGIVGYT-----NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM--LVDTVGFIRGIP----PQIVDAFFV 250 (364)
T ss_dssp EEEECBT-----TSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE--EEECCCBCSSCC----GGGHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE--EEeCCCchhcCC----HHHHHHHHH
Confidence 5566665 799999999999987520 025799999997652 122345544321 111221
Q ss_pred HHHHHH--Hc--C-CC-cccc--HHHHHHHHHHHHHHhCCCccc----CCccCCcCCCCccccChHHHHHHHHH----HH
Q psy2519 122 HLYFMA--LL--K-LD-RRVK--AYQRIALINSLLIELGLMNSQ----HTRIGSSSITQKVVLSGGERKRLSFA----TE 185 (622)
Q Consensus 122 ~l~f~~--~l--~-~~-~~~~--~~~~~~~v~~~l~~lgL~~~~----~~~v~~~~~~~~~gLSgGqrqRvsIA----~a 185 (622)
.+.... .. . .+ .... ..+..+.+.++++.+++.+.. ..++.. +|+|+++|+.++ ++
T Consensus 251 tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl--------~~~~~~~~~~~~~~l~~~ 322 (364)
T 2qtf_A 251 TLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDK--------INGDLYKKLDLVEKLSKE 322 (364)
T ss_dssp HHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGG--------CCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCC--------CCchHHHHHHHHHHHHHH
Confidence 111000 00 0 00 0111 223344567888888876543 233333 788889988887 55
Q ss_pred H-hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh
Q psy2519 186 L-LTDPALLLCDEPTTGLDSFSASKLIRMMRELTS 219 (622)
Q Consensus 186 L-~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~ 219 (622)
+ ..+|++ +|+|++|.....++.+.|.+...
T Consensus 323 l~~~~~~~----~~~SA~~g~gi~~L~~~I~~~l~ 353 (364)
T 2qtf_A 323 LYSPIFDV----IPISALKRTNLELLRDKIYQLAT 353 (364)
T ss_dssp HCSCEEEE----EECBTTTTBSHHHHHHHHHHHHH
T ss_pred hcCCCCcE----EEEECCCCcCHHHHHHHHHHHhc
Confidence 4 334444 89999999999999999988765
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.05 E-value=8e-07 Score=85.23 Aligned_cols=37 Identities=16% Similarity=0.144 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHH
Q psy2519 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELT 218 (622)
Q Consensus 180 vsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~ 218 (622)
...|++++.+|+++++| ||++|.....++++.|.+..
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~~ 166 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTEI 166 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHHH
Confidence 45689999999999999 99999999999998887754
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.1e-06 Score=96.12 Aligned_cols=52 Identities=10% Similarity=-0.059 Sum_probs=44.8
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
.++++++|+++ .+ +.++++|+| ||||||||++|+|+.+| .+|+|.++|+++.
T Consensus 17 ~~~l~~vsl~i-----~~-e~~~liG~n-----GsGKSTLl~~l~Gl~~p---~~G~I~~~g~~~~ 68 (483)
T 3euj_A 17 WNGFFARTFDF-----DE-LVTTLSGGN-----GAGKSTTMAGFVTALIP---DLTLLNFRNTTEA 68 (483)
T ss_dssp ETTEEEEEEEC-----CS-SEEEEECCT-----TSSHHHHHHHHHHHHCC---CTTTCCCCCTTSC
T ss_pred cccccceEEEE-----cc-ceEEEECCC-----CCcHHHHHHHHhcCCCC---CCCEEEECCEEcc
Confidence 45789999998 55 777788776 89999999999999998 4899999999875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.92 E-value=2.4e-06 Score=90.02 Aligned_cols=149 Identities=11% Similarity=-0.004 Sum_probs=81.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE-EECCEecCc-cccccEEEEecCCCCCCCCCHHHHHHHHH
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI-RVNGKPVEG-KFRSACGFMYQHDLFSPSLTVYEHLYFMA 127 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I-~~~G~~~~~-~~r~~igyV~Q~~~l~~~lTV~E~l~f~~ 127 (622)
|+.+.+.|+ ||||||||+..+++...+. .|.+ +++++.... ...+++|+.+|+..+....++.+.+....
T Consensus 61 G~i~~I~Gp-----pGsGKSTLal~la~~~~~~---gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~ 132 (356)
T 3hr8_A 61 GRIVEIFGQ-----ESSGKTTLALHAIAEAQKM---GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVD 132 (356)
T ss_dssp TEEEEEEES-----TTSSHHHHHHHHHHHHHHT---TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHH
T ss_pred CcEEEEECC-----CCCCHHHHHHHHHHHHHhc---CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHH
Confidence 444444444 4899999999999876542 3544 566654322 23345566666544444445554443211
Q ss_pred HcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcCCCCccccCh--HHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 128 LLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSSITQKVVLSG--GERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 128 ~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~~~~~~gLSg--GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
.+++.-+..- ..|.. ...+| ...++| |++|+...||++.
T Consensus 133 ------------------~l~~~~~~dlvVIDSi-~~l~~--~~el~g~~G~~q~~~qar~la----------------- 174 (356)
T 3hr8_A 133 ------------------ELVRSGVVDLIVVDSV-AALVP--RAEIEGAMGDMQVGLQARLMS----------------- 174 (356)
T ss_dssp ------------------HHHHTSCCSEEEEECT-TTCCC--HHHHTTCCCSSCSSHHHHHHH-----------------
T ss_pred ------------------HHhhhcCCCeEEehHh-hhhcC--hhhhcccchhhHHHHHHHHHH-----------------
Confidence 1111111110 00110 00001 001333 5666666666654
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccC---------------cHHHHhhccceeeecC
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQP---------------SSELIDMFDKIILLAD 248 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~---------------~~~i~~~~D~v~~L~~ 248 (622)
++++.|++++++.|.|||++.|-. ...+.+.+|-++.+..
T Consensus 175 ----~~L~~L~~lak~~~~tVI~inqv~~k~g~~fg~p~~~~GG~~l~h~~~~rl~l~k 229 (356)
T 3hr8_A 175 ----QALRKIAGSVNKSKAVVIFTNQIRMKIGVMFGSPETTTGGLALKFYATMRMEVRR 229 (356)
T ss_dssp ----HHHHHHHHHHHTSSCEEEEEEESSSCSSSSSCSCSSCTHHHHHHHHCSEEEEEEE
T ss_pred ----HHHHHHHHHHHhcCCEEEEEeeeeeccccccCCcccCCCcchhhhhCcEEEEEEe
Confidence 567778888887899999998861 1125677888888875
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.90 E-value=6.6e-07 Score=86.08 Aligned_cols=65 Identities=6% Similarity=0.121 Sum_probs=46.2
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHH
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHL 123 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l 123 (622)
.+|+.++++|+| |||||||+++|+|+.+ .+.++|.+... ..++.++|++|++.+++.+++.+++
T Consensus 5 ~~g~ii~l~Gp~-----GsGKSTl~~~L~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 5 NKANLFIISAPS-----GAGKTSLVRALVKALA-------EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp CCCCEEEEECCT-----TSCHHHHHHHHHHHSS-------SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCCcEEEEECcC-----CCCHHHHHHHHHhhCC-------CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 356667777776 8999999999999853 35556655443 2356789999988777776666654
Q ss_pred H
Q psy2519 124 Y 124 (622)
Q Consensus 124 ~ 124 (622)
.
T Consensus 73 ~ 73 (205)
T 3tr0_A 73 L 73 (205)
T ss_dssp E
T ss_pred E
Confidence 3
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.75 E-value=3.9e-05 Score=80.20 Aligned_cols=54 Identities=17% Similarity=0.202 Sum_probs=46.0
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcC-CCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQR-KKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~-g~tvi~~tH 230 (622)
||.++++|++.|...+.++++.+.|+|... ..++.+.++++.++. |..+|++-|
T Consensus 110 Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~s-----i~~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 110 LDDDQWENLAKCFDHLSQKKLFFYDKSYVR-----IEQIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHSCEEEECCTTCC-----HHHHHHHHHHHHHHCTTEEEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCeEEeCCCCCc-----HHHHHHHHHHHHHhcCCCCEEEEec
Confidence 999999999999999999999999998654 447778888887766 788888866
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.73 E-value=5.3e-05 Score=87.92 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=60.9
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEE-eccCcHHHHhhccceeee-
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDKIILL- 246 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~-tH~~~~~i~~~~D~v~~L- 246 (622)
.-+|.|+.+|..++..++.+++++++|||.. +||......+++.+.+... ..++|+++ ||++ ..+.+++++.-++
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~-~~~iIl~SAT~~~-~~l~~~~~~~~vi~ 266 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRP-DLKIIIMSATLDA-EKFQRYFNDAPLLA 266 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCT-TCEEEEEESCSCC-HHHHHHTTSCCEEE
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCC-CceEEEEeccccH-HHHHHHhcCCCccc
Confidence 3489999999999999999999999999996 9998877777777766543 45677774 9986 5777777754433
Q ss_pred cCCc
Q psy2519 247 ADSR 250 (622)
Q Consensus 247 ~~G~ 250 (622)
..|+
T Consensus 267 v~gr 270 (773)
T 2xau_A 267 VPGR 270 (773)
T ss_dssp CCCC
T ss_pred ccCc
Confidence 3444
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.70 E-value=2.5e-05 Score=82.36 Aligned_cols=59 Identities=14% Similarity=0.106 Sum_probs=47.6
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEe-CCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEe--ccCc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCD-EPTTGLDSFSASKLIRMMRELTSQRKKTVLCTI--HQPS 233 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLD-EPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~t--H~~~ 233 (622)
+|+||+|++. +.+...++-++++| +|+.|+|.....++++.+.+... +..+|++. ||..
T Consensus 232 ~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~--~~piilV~NK~Dl~ 293 (357)
T 2e87_A 232 RNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFK--DLPFLVVINKIDVA 293 (357)
T ss_dssp SCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTT--TSCEEEEECCTTTC
T ss_pred hhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcC--CCCEEEEEECcccC
Confidence 8999998876 55556777889999 99999999998888888877643 67788877 8853
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.66 E-value=5.6e-06 Score=81.77 Aligned_cols=52 Identities=13% Similarity=0.111 Sum_probs=35.3
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc------------cccccEEEEecC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG------------KFRSACGFMYQH 110 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~------------~~r~~igyV~Q~ 110 (622)
+.++++|+| ||||||||++|+|.+.| .+|+|.++|.++.. ..++.++||+|+
T Consensus 28 ~~~~i~Gpn-----GsGKSTll~~i~g~~~~---~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 28 LVTTLSGGN-----GAGKSTTMAAFVTALIP---DLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp HHHHHHSCC-----SHHHHHHHHHHHHHHSC---CTTTC------------------CGGGBCSSEEEEEEE
T ss_pred cEEEEECCC-----CCCHHHHHHHHhccccc---CCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666666 89999999999999998 48999999988721 136789999984
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00017 Score=75.90 Aligned_cols=58 Identities=12% Similarity=0.139 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
.++.++++.++++..+.+|+++++.-..+..|... .+..++++++......++++.+.
T Consensus 155 ~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 155 SDSIVKDIENMVRSYIEKPNCIILAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp CSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred chhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 56788999999999999999888774334445433 55667777776533368888776
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=97.51 E-value=3.6e-06 Score=81.04 Aligned_cols=60 Identities=10% Similarity=0.010 Sum_probs=39.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc---ccccEEEEecCCCCCCCCCHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK---FRSACGFMYQHDLFSPSLTVY 120 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~---~r~~igyV~Q~~~l~~~lTV~ 120 (622)
+++.++++|+| |||||||+++|++++ |.+.++|.++... .+...|+++|+....+.+++.
T Consensus 28 ~g~~i~l~G~~-----GsGKSTl~~~L~~~~-------g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 90 (200)
T 4eun_A 28 PTRHVVVMGVS-----GSGKTTIAHGVADET-------GLEFAEADAFHSPENIATMQRGIPLTDEDRWPWLRSL 90 (200)
T ss_dssp CCCEEEEECCT-----TSCHHHHHHHHHHHH-------CCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHhh-------CCeEEcccccccHHHHHHHhcCCCCCCcccccHHHHH
Confidence 45556666665 899999999999864 7888988776431 223457778764443333333
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00021 Score=78.17 Aligned_cols=59 Identities=24% Similarity=0.343 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCC----------CCCCCHHHHHHHHHHHHHHH---hcCCCEEEEEeccC
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEP----------TTGLDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 232 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEP----------TsgLD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~ 232 (622)
|++++|..++++....|.+|++||+ ++|.|+.....+.+++..+- ...+..||.+||+|
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~ 164 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRP 164 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCCh
Confidence 5678888899999999999999999 44677776666777776663 23578899999986
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.45 E-value=1.6e-07 Score=99.77 Aligned_cols=138 Identities=8% Similarity=-0.026 Sum_probs=73.8
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCccccccEEEEecCCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDL 112 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~~r~~igyV~Q~~~ 112 (622)
++++++++.+ .+++.+++.|++ |||||||+++|+|.. +|++...+.+ ....+..+|++||...
T Consensus 157 ~~l~~~~~~i-----~~~~~i~l~G~~-----GsGKSTl~~~l~~~~------~g~~~~~~~~-~~~~~~~lg~~~q~~~ 219 (377)
T 1svm_A 157 DFLKCMVYNI-----PKKRYWLFKGPI-----DSGKTTLAAALLELC------GGKALNVNLP-LDRLNFELGVAIDQFL 219 (377)
T ss_dssp HHHHHHHHCC-----TTCCEEEEECST-----TSSHHHHHHHHHHHH------CCEEECCSSC-TTTHHHHHGGGTTCSC
T ss_pred HHHHhccccc-----CCCCEEEEECCC-----CCCHHHHHHHHHhhc------CCcEEEEecc-chhHHHHHHHhcchhH
Confidence 5677777777 455566666554 899999999999853 5776652111 1112234667777653
Q ss_pred -CCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHH---HhCCCc-------------ccCCccCCcCCCCccccChH
Q psy2519 113 -FSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLI---ELGLMN-------------SQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 113 -l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~---~lgL~~-------------~~~~~v~~~~~~~~~gLSgG 175 (622)
++...+...++ ...+.. . ........+.+.++ .+.+.. ..+..+ .-+++|
T Consensus 220 ~l~dd~~~~~~~--~r~l~~--~-~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~--------~~l~~~ 286 (377)
T 1svm_A 220 VVFEDVKGTGGE--SRDLPS--G-QGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNE--------YSVPKT 286 (377)
T ss_dssp EEETTCCCSTTT--TTTCCC--C-SHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECS--------CCCCHH
T ss_pred HHHHHHHHHHHH--Hhhccc--c-CcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhH--------HhhcHH
Confidence 33343332211 000100 0 00000112223332 111110 112222 238999
Q ss_pred HHHHHHHHHHHhhCCCeEE-EeCCCC
Q psy2519 176 ERKRLSFATELLTDPALLL-CDEPTT 200 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLl-LDEPTs 200 (622)
+++|+..+.+++.+|++++ ||+|+.
T Consensus 287 ~~~rl~~~~~l~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 287 LQARFVKQIDFRPKDYLKHCLERSEF 312 (377)
T ss_dssp HHTTEEEEEECCCCHHHHHHHHTCTH
T ss_pred HHHHHhhhhccCCCCCeEEEEeCCHH
Confidence 9999998877788888877 888776
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.45 E-value=1.7e-07 Score=103.14 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=73.4
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCcc----ccccEEEEecCCC-CCCCCCHHHHHHHHH
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEGK----FRSACGFMYQHDL-FSPSLTVYEHLYFMA 127 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~~----~r~~igyV~Q~~~-l~~~lTV~E~l~f~~ 127 (622)
+++.|++ |+|||||+++|++... .|.+.++|.++... ..+.+..+||+.. ..|.+.+.|++....
T Consensus 67 vLL~Gpp-----GtGKTtLaraIa~~~~-----~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~ 136 (499)
T 2dhr_A 67 VLLVGPP-----GVGKTHLARAVAGEAR-----VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 136 (499)
T ss_dssp EEEECSS-----SSSHHHHHHHHHHHTT-----CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTC
T ss_pred EEEECCC-----CCCHHHHHHHHHHHhC-----CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 5666665 8999999999999864 58889998776431 2344566777643 456666666663322
Q ss_pred HcCCC-ccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCC
Q psy2519 128 LLKLD-RRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTT 200 (622)
Q Consensus 128 ~l~~~-~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTs 200 (622)
..+.. ......+..+.+..++. . |||||+|+..|+++...+|++ |||+..
T Consensus 137 ~~r~~~~~~~~~e~~~~l~~LL~-------------~--------Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 137 RKRGSGVGGGNDEREQTLNQLLV-------------E--------MDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp CCSSSSTTTSSHHHHHHHHHHHH-------------H--------GGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred HhhccCcCCCcHHHHHHHHHHHH-------------H--------hcccccCccEEEEEecCChhh--cCcccc
Confidence 11110 00011223333444443 2 889999998899999999987 798864
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00011 Score=79.73 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=51.7
Q ss_pred hCCCeEEEeCCCCCCCH-HHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee-ecCCceEEecChH
Q psy2519 188 TDPALLLCDEPTTGLDS-FSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL-LADSRTAFIGSKD 258 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~-L~~G~iv~~G~~~ 258 (622)
.+|++|++||+..-.+. .+..++...+.++.+ .|+.+|+++|++..++..+.+++.- +..|.++..++++
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~-~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHD-SGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHT-TTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 48999999999877664 677889999998876 6899999999864443334455444 4567777776654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.20 E-value=8e-06 Score=90.99 Aligned_cols=40 Identities=15% Similarity=0.182 Sum_probs=31.2
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceee-EEE-ECCEec
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDG-DIR-VNGKPV 96 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G-~I~-~~G~~~ 96 (622)
+|+.++++|.| |||||||+++|+|++.+. +| +|. ++|.++
T Consensus 368 ~G~iI~LiG~s-----GSGKSTLar~La~~L~~~---~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 368 QGFTVFFTGLS-----GAGKSTLARALAARLMEM---GGRCVTLLDGDIV 409 (552)
T ss_dssp SCEEEEEEESS-----CHHHHHHHHHHHHHHHTT---CSSCEEEESSHHH
T ss_pred cceEEEEECCC-----CChHHHHHHHHHHhhccc---CCceEEEECCcHH
Confidence 45566667665 899999999999999873 55 784 888765
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=6.1e-06 Score=79.45 Aligned_cols=61 Identities=16% Similarity=0.116 Sum_probs=36.6
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEE--EECCEecCc
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDI--RVNGKPVEG 98 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I--~~~G~~~~~ 98 (622)
|++.+ .|...+.+..++.. .+++.++++|++ |||||||.++|++++.. .|.+ .++|.++..
T Consensus 4 ~~~~~--~~~~~~~~~~~~~~-----~~g~~i~l~G~s-----GsGKSTl~~~La~~l~~----~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 4 NIKWH--ECSVEKVDRQRLLD-----QKGCVIWVTGLS-----GSGKSTLACALNQMLYQ----KGKLCYILDGDNVRH 66 (200)
T ss_dssp --------CCCCHHHHHHHHT-----SCCEEEEEECST-----TSSHHHHHHHHHHHHHH----TTCCEEEEEHHHHTT
T ss_pred CCccc--ccccCHHHHHHhcC-----CCCeEEEEECCC-----CCCHHHHHHHHHHHHHh----cCceEEEecCchhhh
Confidence 44443 35555544444332 345555555554 89999999999998763 5776 888876654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.11 E-value=3.7e-05 Score=77.07 Aligned_cols=53 Identities=6% Similarity=-0.135 Sum_probs=32.0
Q ss_pred CcccCCc-cccccccceeeeEeeeeEEEEcccCC---CcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 17 NEEVPNV-DFSEIVGSVQVYAIVNLLVIMDQTAS---TSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 17 ~~~~~~~-~~~~~~g~~~~l~~v~l~~~~~~~~~---~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|| +|+| .++.++|+++|+++ .+ ++.++++|++ ||||||+.++|++.+.
T Consensus 17 ~l~~~~~~~~~~-~~~~~~l~~~~~~i-----~~~l~g~~i~l~G~~-----GsGKSTl~~~La~~lg 73 (250)
T 3nwj_A 17 LLETGSLLHSPF-DEEQQILKKKAEEV-----KPYLNGRSMYLVGMM-----GSGKTTVGKIMARSLG 73 (250)
T ss_dssp ----------------CHHHHHHHHTT-----HHHHTTCCEEEECST-----TSCHHHHHHHHHHHHT
T ss_pred ceEEcceeeEEe-cCcchhhhhhhhhh-----hhhcCCCEEEEECCC-----CCCHHHHHHHHHHhcC
Confidence 6899999 9986 36678999999988 45 6677777665 8999999999998653
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=97.10 E-value=4.5e-05 Score=76.31 Aligned_cols=55 Identities=5% Similarity=-0.031 Sum_probs=43.5
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHh---CCCCCCCceeeEEE--------ECCEecCc-----cccccEEEEecCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFL---SQVIDDCIIDGDIR--------VNGKPVEG-----KFRSACGFMYQHD 111 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~---g~~~~~~~~~G~I~--------~~G~~~~~-----~~r~~igyV~Q~~ 111 (622)
++..++|+|++ ||||||++++|+ |+..+ .+|.|. .+|.++.. .+++.+++++|++
T Consensus 26 ~g~~I~I~G~~-----GsGKSTl~k~La~~Lg~~~~---d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 26 IAPVITVDGPS-----GAGKGTLCKALAESLNWRLL---DSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TSCEEEEECCT-----TSSHHHHHHHHHHHTTCEEE---EHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEE
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHhcCCCcC---CCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecC
Confidence 45566666665 899999999999 88877 589998 89988743 3677899999854
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.10 E-value=0.00074 Score=69.77 Aligned_cols=55 Identities=9% Similarity=0.148 Sum_probs=45.3
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCE--EEEEecc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKT--VLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~t--vi~~tH~ 231 (622)
||.++++|+..|...+.++++.+.|+|... ..++.+.++++.++.|.. +|++-|-
T Consensus 134 l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-----~~~i~~~i~~l~~~~~~~~~lVVID~l 190 (315)
T 3bh0_A 134 FASEDWGKLSMAIGEISNSNINIFDKAGQS-----VNYIWSKTRQTKRKNPGKRVIVMIDYL 190 (315)
T ss_dssp HCSSCHHHHHHHHHHHHTSCEEEECCSCCB-----HHHHHHHHHHHHHTSSSCCEEEEEECG
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEECCCCCC-----HHHHHHHHHHHHHhcCCCCeEEEEeCc
Confidence 899999999999999999999999998643 456777788887756777 8888774
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=7.1e-05 Score=72.01 Aligned_cols=69 Identities=14% Similarity=0.149 Sum_probs=41.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHH--Hhhccceeee
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSEL--IDMFDKIILL 246 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i--~~~~D~v~~L 246 (622)
.+.|+.+|..++..+..+|+.+..+ ++.++|.....+.+.+++. .+.++|+.+|... +. .+.||.++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~---~~~~vv~~~~~l~-e~~~~~~~d~vi~l 130 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ---TAPYTLFVVPLLI-ENKLTALCDRILVV 130 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC---CSSEEEEECTTTT-TTTCGGGCSEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc---CCCEEEEEechhh-hcCcHhhCCEEEEE
Confidence 4678899999999888888754333 3456676666665555432 2558888888753 33 4567877776
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0006 Score=70.02 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=48.0
Q ss_pred cChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCHHH-HHHHHHHHHHHHhcCCC--EEEEEeccCcHHHHhhcccee
Q psy2519 172 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDSFS-ASKLIRMMRELTSQRKK--TVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD~~~-~~~i~~~l~~l~~~~g~--tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+|+|++ .+++.+. ..|.++++ +.+|... ...+.+.+++++++.|. .+.++.|+- ..+.+++|.+.
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g-~~v~~l~~~i~ 170 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETG-LNVDTIAAIVR 170 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTT-TTHHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCC-CCHHHHHHHHH
Confidence 888886 5666676 68999998 7899877 67788888888864454 566677773 56777777664
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00026 Score=80.74 Aligned_cols=125 Identities=8% Similarity=-0.060 Sum_probs=72.6
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc----cccccEEEEecCCCCCCCCCHHHHHH
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~ 124 (622)
++..++++|.+ |||||||++.|.+...+. ...|+| .+|..+.+ +.++.+++.+|...+... ++..
T Consensus 8 ~~~~i~IiG~~-----gaGKTTLl~~L~~~~~~~-~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~-~~~~--- 76 (665)
T 2dy1_A 8 MIRTVALVGHA-----GSGKTTLTEALLYKTGAK-ERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFR-GHRV--- 76 (665)
T ss_dssp CEEEEEEEEST-----TSSHHHHHHHHHHHTTSS-SSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEET-TEEE---
T ss_pred CCcEEEEECCC-----CChHHHHHHHHHHhcCCC-Ccccee-cCCcccccCCHHHHhcCCeEEecceEEeeC-CEEE---
Confidence 45567777775 899999999999765431 136777 56665543 235566666665433221 1100
Q ss_pred HHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 125 f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
...|+. |. . .++ .......-..+..++++| |+.|+|+
T Consensus 77 ------------------------------nliDTp-G~-----~-~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~ 113 (665)
T 2dy1_A 77 ------------------------------FLLDAP-GY-----G-DFV-----GEIRGALEAADAALVAVS-AEAGVQV 113 (665)
T ss_dssp ------------------------------EEEECC-CS-----G-GGH-----HHHHHHHHHCSEEEEEEE-TTTCSCH
T ss_pred ------------------------------EEEeCC-Cc-----c-chH-----HHHHHHHhhcCcEEEEEc-CCcccch
Confidence 011211 11 0 011 111222235678899999 9999998
Q ss_pred HHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 205 FSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 205 ~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.+. +.++.+.+ .+.++|++.|..
T Consensus 114 qt~----~~~~~~~~-~~ip~ilv~NKi 136 (665)
T 2dy1_A 114 GTE----RAWTVAER-LGLPRMVVVTKL 136 (665)
T ss_dssp HHH----HHHHHHHH-TTCCEEEEEECG
T ss_pred hHH----HHHHHHHH-ccCCEEEEecCC
Confidence 776 33333333 588899999875
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0017 Score=68.02 Aligned_cols=44 Identities=16% Similarity=0.084 Sum_probs=34.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHh--cCCCEEEEEeccC
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTS--QRKKTVLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~--~~g~tvi~~tH~~ 232 (622)
.+|.++++||+... |+.....+.+.+.++.. ..+.++|+++|++
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~ 169 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHND 169 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESST
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCc
Confidence 45889999999876 88888888888876653 1378899999986
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0057 Score=61.90 Aligned_cols=74 Identities=19% Similarity=0.313 Sum_probs=43.9
Q ss_pred ChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHH----------HHHHHHHHHHHHHhc---CCCEEEEEeccC---cHHH
Q psy2519 173 SGGERKRLSFATELLTDPALLLCDEPTTGLDSF----------SASKLIRMMRELTSQ---RKKTVLCTIHQP---SSEL 236 (622)
Q Consensus 173 SgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~----------~~~~i~~~l~~l~~~---~g~tvi~~tH~~---~~~i 236 (622)
+++++.|..++.+...+|.+|++||+.+.++.. ....++..+...... .+..||.+|++| ...+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l 176 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAA 176 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHH
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHH
Confidence 456777777788888899999999998765532 222344444433211 235677788864 2334
Q ss_pred Hhhccceeee
Q psy2519 237 IDMFDKIILL 246 (622)
Q Consensus 237 ~~~~D~v~~L 246 (622)
.+.|++.+.+
T Consensus 177 ~~R~~~~i~~ 186 (297)
T 3b9p_A 177 LRRFTKRVYV 186 (297)
T ss_dssp HHHCCEEEEC
T ss_pred HhhCCeEEEe
Confidence 4455554443
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00034 Score=66.86 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=22.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+|+.++++|++ |||||||+++|+++..|
T Consensus 5 ~g~~i~l~G~~-----GsGKSTl~~~L~~~~~~ 32 (207)
T 2j41_A 5 KGLLIVLSGPS-----GVGKGTVRKRIFEDPST 32 (207)
T ss_dssp CCCEEEEECST-----TSCHHHHHHHHHHCTTC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHHHhhCC
Confidence 45566666665 89999999999999866
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00019 Score=74.46 Aligned_cols=69 Identities=4% Similarity=0.050 Sum_probs=46.5
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--------cc-----cccEEEE-ecCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--------KF-----RSACGFM-YQHDLF 113 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--------~~-----r~~igyV-~Q~~~l 113 (622)
++++.+.++|+| |+||||++..|++.+.+ ..|+|.+.+.++.+ .+ +..++++ +|....
T Consensus 103 ~~~~vI~ivG~~-----G~GKTT~~~~LA~~l~~---~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~~ 174 (320)
T 1zu4_A 103 NRLNIFMLVGVN-----GTGKTTSLAKMANYYAE---LGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLNA 174 (320)
T ss_dssp TSCEEEEEESST-----TSSHHHHHHHHHHHHHH---TTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTTC
T ss_pred CCCeEEEEECCC-----CCCHHHHHHHHHHHHHH---CCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCCC
Confidence 344455555553 89999999999999876 36899998877642 12 5678898 676544
Q ss_pred CCCCCHHHHHH
Q psy2519 114 SPSLTVYEHLY 124 (622)
Q Consensus 114 ~~~lTV~E~l~ 124 (622)
.|..++.+++.
T Consensus 175 ~p~~~~~~~l~ 185 (320)
T 1zu4_A 175 DPASVVFDAIK 185 (320)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 44434444443
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00071 Score=63.44 Aligned_cols=27 Identities=19% Similarity=-0.022 Sum_probs=22.3
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
++..+|+|+| |||||||+++|.+.+.+
T Consensus 26 ~g~~~i~G~N-----GsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGAN-----GSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECT-----TSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCC-----CCCHHHHHHHHHHHHcC
Confidence 4477777777 89999999999998765
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=96.54 E-value=0.011 Score=61.58 Aligned_cols=55 Identities=11% Similarity=0.148 Sum_probs=40.2
Q ss_pred HHHHHHHHHh----hCCCeEEEeCCCCCCCHH------------HHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 178 KRLSFATELL----TDPALLLCDEPTTGLDSF------------SASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 178 qRvsIA~aL~----~~P~lLlLDEPTsgLD~~------------~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.+..++.++ .+++++++|+.++-.+.. ...+++..|++++++.|.+||++.|..
T Consensus 204 ~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 204 ELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEeece
Confidence 4555566666 569999999999865432 135677778888887899999998863
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.016 Score=62.69 Aligned_cols=58 Identities=14% Similarity=0.083 Sum_probs=42.6
Q ss_pred cChHHHHHHHHHHHHh--hCCCeEEEeCCCCCCCH----------HHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 172 LSGGERKRLSFATELL--TDPALLLCDEPTTGLDS----------FSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~lLlLDEPTsgLD~----------~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|..+- .+.++.+. .+|+++++|..+.-.++ ....++.+.|+.++++.|.+||+++|-
T Consensus 293 ~s~~~l--~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 362 (444)
T 2q6t_A 293 LTLMEV--RARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQL 362 (444)
T ss_dssp CBHHHH--HHHHHHHHHHSCCCEEEEECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEEC
T ss_pred CCHHHH--HHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 676664 34556665 48999999998764432 123578888999998889999999984
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00059 Score=64.30 Aligned_cols=37 Identities=14% Similarity=0.085 Sum_probs=26.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
|+.++++|++ |||||||++.|++..++. ..|.|....
T Consensus 5 g~~i~i~Gps-----GsGKSTL~~~L~~~~~~~--~~~~i~~tt 41 (180)
T 1kgd_A 5 RKTLVLLGAH-----GVGRRHIKNTLITKHPDR--FAYPIPHTT 41 (180)
T ss_dssp CCEEEEECCT-----TSSHHHHHHHHHHHCTTT--EECCCCEEC
T ss_pred CCEEEEECCC-----CCCHHHHHHHHHhhCCcc--EEEeeeccC
Confidence 4455666554 899999999999987642 456665433
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.00011 Score=68.62 Aligned_cols=37 Identities=11% Similarity=0.024 Sum_probs=26.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
+++.++++|++ ||||||+.+.|++++ |.+.+++.++.
T Consensus 7 ~g~~i~l~G~~-----GsGKSTl~~~l~~~~-------g~~~i~~d~~~ 43 (175)
T 1knq_A 7 DHHIYVLMGVS-----GSGKSAVASEVAHQL-------HAAFLDGDFLH 43 (175)
T ss_dssp TSEEEEEECST-----TSCHHHHHHHHHHHH-------TCEEEEGGGGC
T ss_pred CCcEEEEEcCC-----CCCHHHHHHHHHHhh-------CcEEEeCcccc
Confidence 34455555554 899999999999853 66777776553
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.00088 Score=74.08 Aligned_cols=155 Identities=12% Similarity=-0.009 Sum_probs=82.0
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC----------------------C-CCC---------
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ----------------------V-IDD--------- 82 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~----------------------~-~~~--------- 82 (622)
++++++.+ ..+..+++|+| ||||||||++|..+ . ..+
T Consensus 51 ~~~~~l~f------~~g~n~i~G~N-----GaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r 119 (517)
T 4ad8_A 51 ITQLELEL------GGGFCAFTGET-----GAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASR 119 (517)
T ss_dssp BSCEEEEC------CCSEEEEEESH-----HHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEE
T ss_pred eeeEEEec------CCCeEEEEcCC-----CCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEE
Confidence 44556555 34577777777 79999999999554 1 100
Q ss_pred ---CceeeEEEECCEecCc-----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhC-C
Q psy2519 83 ---CIIDGDIRVNGKPVEG-----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELG-L 153 (622)
Q Consensus 83 ---~~~~G~I~~~G~~~~~-----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lg-L 153 (622)
....+++.+||++++. .....+.+++|++.+.......+ ..|--..................++++++. +
T Consensus 120 ~~~~~g~~~~~ing~~v~~~~l~~~~~~li~i~~q~~~~~l~~~~~r-r~~LD~~~~~~~~~~~~~~~~~~~~~~~~~~l 198 (517)
T 4ad8_A 120 RLSSAGRGAARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQ-RGLLDRRVTKEAQAYAAAHAAWREAVSRLERL 198 (517)
T ss_dssp EEETTSCCEEESSSSBCCHHHHHHHHTTTEEEESGGGGGTTTSHHHH-HHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCcEEEECCEECCHHHHHHHhhhheEEeCCchHHhcCCHHHH-HHHHHHHhCcchHHHHHHHHHHHHHHHHHHHH
Confidence 0124678889988764 13566889999877655433333 333211110000000111111222222221 1
Q ss_pred CcccCCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEE
Q psy2519 154 MNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTV 225 (622)
Q Consensus 154 ~~~~~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tv 225 (622)
.......... ++-.++|...|+.+ .|.+....++.+.++++.+ .+..+
T Consensus 199 ~~~~~~~~~~--------l~~l~~ql~ei~~~---------------~l~~~E~e~L~~~~~~L~~-~~~~~ 246 (517)
T 4ad8_A 199 QASQRERARQ--------IDLLAFQVQEISEV---------------SPDPGEEEGLNTELSRLSN-LHESS 246 (517)
T ss_dssp HHHHHHHHHH--------HHHHHHHHHHHHHH---------------CCCSSCHHHHHHHHHHHHH-HC---
T ss_pred HHhHHHHHHH--------HHHHHHHHHHHHhc---------------CCCCCcHHHHHHHHHHHHH-HHHHH
Confidence 1111111112 77888888888886 3455567788888888876 34443
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0055 Score=65.99 Aligned_cols=50 Identities=8% Similarity=0.092 Sum_probs=32.4
Q ss_pred HHHHHHhhCCCeEEEeCCC-CC--CCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 181 SFATELLTDPALLLCDEPT-TG--LDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 181 sIA~aL~~~P~lLlLDEPT-sg--LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+++.+...+++++|+|+|- .+ .|+....++.++.+.+.. ....+++..|.
T Consensus 171 al~~a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~p-d~vlLVlDa~~ 223 (433)
T 3kl4_A 171 GVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKP-DDVILVIDASI 223 (433)
T ss_dssp HHHHTTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCC-SEEEEEEEGGG
T ss_pred HHHHHHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCC-cceEEEEeCcc
Confidence 4455555689999999886 34 788777777776666543 34445555543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=96.19 E-value=0.025 Score=58.32 Aligned_cols=55 Identities=16% Similarity=0.152 Sum_probs=41.2
Q ss_pred HHHHHHHHHHh---hCCCeEEEeCCCCCCCH--------H----HHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 177 RKRLSFATELL---TDPALLLCDEPTTGLDS--------F----SASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 177 rqRvsIA~aL~---~~P~lLlLDEPTsgLD~--------~----~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.+.+..++.++ .+|+++++|+.++-.+. . ...+++..|++++++.|.+||++.|.
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~~~~~l~~L~~la~~~~~~Vi~~nq~ 257 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQKLNKHLHQLTRLAEVYDIAVIITNQV 257 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHHHHHHHHHHHHHHHHHhCCEEEEEcce
Confidence 35677778887 57999999999875432 1 23566777788887779999999885
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0014 Score=64.31 Aligned_cols=36 Identities=17% Similarity=0.114 Sum_probs=27.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+|..+++.|++ |||||||+++|+|+ .|+|.+.|+|.
T Consensus 19 ~g~~i~i~G~~-----GsGKSTl~~~L~~~-------~g~v~~~~~~~ 54 (230)
T 2vp4_A 19 QPFTVLIEGNI-----GSGKTTYLNHFEKY-------KNDICLLTEPV 54 (230)
T ss_dssp CCEEEEEECST-----TSCHHHHHHTTGGG-------TTTEEEECCTH
T ss_pred CceEEEEECCC-----CCCHHHHHHHHHhc-------cCCeEEEecCH
Confidence 44455566555 89999999999997 37888888765
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.98 E-value=0.0072 Score=56.22 Aligned_cols=69 Identities=10% Similarity=0.028 Sum_probs=33.9
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce---EEecChHH
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT---AFIGSKDA 259 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i---v~~G~~~~ 259 (622)
.+++++++ .+-.|......+.+..++++++.|..++.+++.....+.++++.+.-.-.++. .+.+..++
T Consensus 111 ~~~piilv---~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l~~~i~~~~~~~~~~~~~~~~~~~ 182 (188)
T 2wjg_A 111 MGANLLLA---LNKMDLAKSLGIEIDVDKLEKILGVKVVPLSAAKKMGIEELKKAISIAVKDKKTAEIKYPNFEP 182 (188)
T ss_dssp TTCCEEEE---EECHHHHHHTTCCCCHHHHHHHHTSCEEECBGGGTBSHHHHHHHHHHHHTTC------------
T ss_pred cCCCEEEE---EEhhhccccccchHHHHHHHHHhCCCeEEEEecCCCCHHHHHHHHHHHHHhccCccCCCHHHHH
Confidence 44455554 24455544433333455565545777777776544467777777765555544 44444443
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.97 E-value=0.0024 Score=66.56 Aligned_cols=43 Identities=12% Similarity=0.196 Sum_probs=24.9
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHH--hcCCCEEEEEeccC
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELT--SQRKKTVLCTIHQP 232 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~--~~~g~tvi~~tH~~ 232 (622)
|.+|++||+....|......+..+++.+. ...+.++|+++|++
T Consensus 129 ~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~~~~I~~~~~~ 173 (386)
T 2qby_A 129 QVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITNDV 173 (386)
T ss_dssp CEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--EEEEEEESCG
T ss_pred eEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCeEEEEEEECCC
Confidence 88999999977553211222333333331 22467899999985
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=95.84 E-value=0.013 Score=60.09 Aligned_cols=44 Identities=14% Similarity=0.159 Sum_probs=33.7
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 188 TDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
.+|++|++||+-. .-|......+...+..+.+ .|..+|++++.+
T Consensus 97 ~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~-~~~~iii~~~~~ 141 (324)
T 1l8q_A 97 KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYL-LEKQIILASDRH 141 (324)
T ss_dssp HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHH-TTCEEEEEESSC
T ss_pred cCCCEEEEcCcccccCChHHHHHHHHHHHHHHH-CCCeEEEEecCC
Confidence 5699999999865 3345778889999988876 577777777754
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0071 Score=65.29 Aligned_cols=67 Identities=16% Similarity=0.150 Sum_probs=35.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC------CCC---ceeeEEEECCEecCc----cccccEEEEecCCCCCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI------DDC---IIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLT 118 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~------~~~---~~~G~I~~~G~~~~~----~~r~~igyV~Q~~~l~~~lT 118 (622)
+++++|++ |||||||+|.|+|... |+. ..+|++.++|+++.- ..++..++.+|....+..++
T Consensus 182 kvaivG~~-----gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~ 256 (439)
T 1mky_A 182 KVAIVGRP-----NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR 256 (439)
T ss_dssp EEEEECST-----TSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred eEEEECCC-----CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence 45666665 8999999999999853 110 146899999986521 23444444445433344434
Q ss_pred HHHHH
Q psy2519 119 VYEHL 123 (622)
Q Consensus 119 V~E~l 123 (622)
+.+++
T Consensus 257 ~~~~i 261 (439)
T 1mky_A 257 VVDSI 261 (439)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0032 Score=60.64 Aligned_cols=28 Identities=7% Similarity=-0.102 Sum_probs=21.7
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+|+.++++|++ |||||||++.|++..++
T Consensus 7 ~g~~i~l~Gps-----GsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPS-----GVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCT-----TSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcC-----CCCHHHHHHHHHhhCCC
Confidence 44455555554 89999999999999875
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0039 Score=59.45 Aligned_cols=38 Identities=5% Similarity=-0.091 Sum_probs=20.2
Q ss_pred eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 32 VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 32 ~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
..+++++|+++ .+++.++++|++ ||||||+.+.|++.+
T Consensus 12 ~~~~~~~~~~~-----~~~~~i~l~G~~-----GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 12 DLGTENLYFQS-----NAMVRIFLTGYM-----GAGKTTLGKAFARKL 49 (199)
T ss_dssp -----------------CCCEEEEECCT-----TSCHHHHHHHHHHHH
T ss_pred CCCCCceeEec-----CCCCEEEEEcCC-----CCCHHHHHHHHHHHc
Confidence 46789999988 455566666554 899999999999765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.055 Score=52.81 Aligned_cols=44 Identities=14% Similarity=0.158 Sum_probs=29.8
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhc-CCCEEEEEecc
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLIRMMRELTSQ-RKKTVLCTIHQ 231 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~-~g~tvi~~tH~ 231 (622)
.+|+++++..+.+.++......+..+++.+... ...++|+.+|.
T Consensus 111 ~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK~ 155 (239)
T 3lxx_A 111 PGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTRK 155 (239)
T ss_dssp TCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEECG
T ss_pred CCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeCC
Confidence 368999999998888886665555555443321 12588888983
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.01 Score=60.56 Aligned_cols=48 Identities=15% Similarity=0.347 Sum_probs=28.9
Q ss_pred HHhhCCCeEEEeCCCC-------------CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 185 ELLTDPALLLCDEPTT-------------GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 185 aL~~~P~lLlLDEPTs-------------gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+.-..|.++++||--+ +.......++++.+..+....+..||.+|+.+
T Consensus 104 a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~ 164 (301)
T 3cf0_A 104 ARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRP 164 (301)
T ss_dssp HHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCG
T ss_pred HHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCc
Confidence 3345689999999532 22223344455555444333467888899876
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.001 Score=68.87 Aligned_cols=33 Identities=9% Similarity=0.038 Sum_probs=21.7
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCH
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDS 204 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~ 204 (622)
+|.+..+|+..+...+..|+++|+|.|....|.
T Consensus 179 yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 179 YSHHYYDIVRGQYEIVDQPDIVILEGLNILQTG 211 (321)
T ss_dssp EETTTTEEEEEEEEEECSCSEEEEECTTTTCCC
T ss_pred hhhhccccccCceeeccCCCEEEEEcccccccc
Confidence 455555554333345578999999999876653
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=95.38 E-value=0.00094 Score=64.82 Aligned_cols=55 Identities=11% Similarity=-0.006 Sum_probs=38.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEE--------CCEecCc-----cccccEEEEecCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRV--------NGKPVEG-----KFRSACGFMYQHD 111 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~--------~G~~~~~-----~~r~~igyV~Q~~ 111 (622)
.+.+.|++ ||||||+.++|++.+.-....+|++.. +|.++.. .+++.+|+++|++
T Consensus 7 ~i~i~G~~-----GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 7 VITIDGPS-----GAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVST 74 (227)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEE
T ss_pred EEEEECCC-----CCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeecc
Confidence 45556554 899999999999865211125788877 6776643 3567789998864
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.36 E-value=0.13 Score=53.89 Aligned_cols=75 Identities=11% Similarity=0.013 Sum_probs=45.5
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCCHH-------------HHHHHHHHHHH---HHhcCCCEEEEEeccCcH------
Q psy2519 179 RLSFATELL--TDPALLLCDEPTTGLDSF-------------SASKLIRMMRE---LTSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 179 RvsIA~aL~--~~P~lLlLDEPTsgLD~~-------------~~~~i~~~l~~---l~~~~g~tvi~~tH~~~~------ 234 (622)
-..+++.++ .+|+++++|+++.-.... ..+.+.+.+++ ++++.|.+||++.|-...
T Consensus 129 ~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg 208 (356)
T 1u94_A 129 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 208 (356)
T ss_dssp HHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHHHHHHHHHHHHHHHHHHHHTCEEEEEEC----------
T ss_pred HHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccC
Confidence 345666664 679999999999866311 11234444444 456679999998885321
Q ss_pred ---------HHHhhccceeeecCCceEE
Q psy2519 235 ---------ELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 235 ---------~i~~~~D~v~~L~~G~iv~ 253 (622)
.+...+|-++.+...+...
T Consensus 209 ~~~~~~gG~~l~~~advrl~l~r~~~~k 236 (356)
T 1u94_A 209 NPETTTGGNALKFYASVRLDIRRIGAVK 236 (356)
T ss_dssp ----CTTCSHHHHHCSEEEEEEEEEEEE
T ss_pred CCcccCCCcceeeeccEEEEEEEeeeec
Confidence 3455677777776555433
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0026 Score=60.89 Aligned_cols=39 Identities=8% Similarity=-0.177 Sum_probs=28.0
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++..+.+.|++ |||||||++.|++.+++ ..|+|.+.+.+
T Consensus 21 ~~~~i~i~G~~-----GsGKstl~~~l~~~~~~---~~~~v~~~~~d 59 (201)
T 1rz3_A 21 GRLVLGIDGLS-----RSGKTTLANQLSQTLRE---QGISVCVFHMD 59 (201)
T ss_dssp SSEEEEEEECT-----TSSHHHHHHHHHHHHHH---TTCCEEEEEGG
T ss_pred CCeEEEEECCC-----CCCHHHHHHHHHHHHhh---cCCeEEEeccC
Confidence 34445555554 89999999999998865 25777776554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0014 Score=61.40 Aligned_cols=29 Identities=7% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCChHHHHHHHhCCCCCCCceee--EEEECCEec
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDG--DIRVNGKPV 96 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G--~I~~~G~~~ 96 (622)
+||||||+.+.|++.+.+ .| .|.++|..+
T Consensus 14 ~GsGKST~~~~L~~~l~~----~g~~~i~~d~~~~ 44 (179)
T 2pez_A 14 SGAGKTTVSMALEEYLVC----HGIPCYTLDGDNI 44 (179)
T ss_dssp TTSSHHHHHHHHHHHHHH----TTCCEEEEEHHHH
T ss_pred CCCCHHHHHHHHHHHHhh----CCCcEEEECChHH
Confidence 489999999999997754 34 566666544
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0014 Score=69.05 Aligned_cols=89 Identities=12% Similarity=0.031 Sum_probs=38.5
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
..+.++|++..+ ++..++++.++++ +++|.+ |+|||||++.|.|.... ..|.+..++.+
T Consensus 16 ~~v~~~~l~~~~--~~k~~~~~~~~~I-----------~vvG~~-----g~GKSTLln~L~~~~~~---~~~~~~~~~~~ 74 (361)
T 2qag_A 16 GYVGFANLPNQV--HRKSVKKGFEFTL-----------MVVGES-----GLGKSTLINSLFLTDLY---PERVIPGAAEK 74 (361)
T ss_dssp -----CCHHHHH--HTHHHHHCCEECE-----------EECCCT-----TSCHHHHHHHHTTCCC---------------
T ss_pred ceEEeccchHHh--CCeeecCCCCEEE-----------EEEcCC-----CCCHHHHHHHHhCCCCC---CCCcccCCCcc
Confidence 457788888875 5556666766544 556555 89999999999887554 24444444433
Q ss_pred cCccc-cccEEEEecCCCCCCCCCHHHHHHH
Q psy2519 96 VEGKF-RSACGFMYQHDLFSPSLTVYEHLYF 125 (622)
Q Consensus 96 ~~~~~-r~~igyV~Q~~~l~~~lTV~E~l~f 125 (622)
..+.. .....+..|.+.....+++.++.-+
T Consensus 75 ~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~ 105 (361)
T 2qag_A 75 IERTVQIEASTVEIEERGVKLRLTVVDTPGY 105 (361)
T ss_dssp ---CEEEEEEEEC----CEEEEEEEEC----
T ss_pred cCCceeEEEEEEEeecCCcccceEEEEeccc
Confidence 32211 1123444444333334555555444
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.022 Score=54.32 Aligned_cols=26 Identities=15% Similarity=-0.040 Sum_probs=19.4
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++..+.+.|++ ||||||+.+.|++..
T Consensus 20 ~~~~i~i~G~~-----GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 20 KTFIIGISGVT-----NSGKTTLAKNLQKHL 45 (207)
T ss_dssp CCEEEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred CCeEEEEECCC-----CCCHHHHHHHHHHhc
Confidence 34445555554 899999999999875
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=95.00 E-value=0.0074 Score=63.69 Aligned_cols=54 Identities=9% Similarity=0.014 Sum_probs=42.0
Q ss_pred cCCcccCCccccccccceeeeE--------------eeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYA--------------IVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~--------------~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.++++||++.|+. +...++ |+.+.+ .+|++..|+|++ |+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~-er~~Le~~~~~~~~tGiraID~~~pi-----~rGQr~~IvG~s-----G~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHAN-SRLRMERGNGSTEDLTARVLDLASPI-----GRGQRGLIVAPP-----KAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCC-SBCCCCCTTCCTTHHHHHHHHHHSCC-----BTTCEEEEECCS-----SSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCC-CccccccCCCCcccccceeeeeeeee-----cCCcEEEEecCC-----CCChhHHHHHHHHHH
Confidence 467889999999854 455677 666666 577777887765 899999999999865
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.029 Score=51.78 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=20.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.+++++|.+ |+|||||++.|+|..
T Consensus 3 ~~~ki~ivG~~-----g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRP-----NAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEEST-----TSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34566777665 799999999999875
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=94.96 E-value=0.022 Score=55.73 Aligned_cols=47 Identities=23% Similarity=0.247 Sum_probs=28.9
Q ss_pred HHHHhhCCCeEEEeCCCCC-CCHHHHHHHHHHHHHHHhcCCCEEEEEec
Q psy2519 183 ATELLTDPALLLCDEPTTG-LDSFSASKLIRMMRELTSQRKKTVLCTIH 230 (622)
Q Consensus 183 A~aL~~~P~lLlLDEPTsg-LD~~~~~~i~~~l~~l~~~~g~tvi~~tH 230 (622)
..+|..+|+++++|||-.- .+.......++.+..+-. .|..++.++|
T Consensus 78 ~~~L~~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~-sgidVitT~N 125 (228)
T 2r8r_A 78 DALLKAAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA-AGIDVYTTVN 125 (228)
T ss_dssp HHHHHHCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH-TTCEEEEEEE
T ss_pred HHHHhcCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc-CCCCEEEEcc
Confidence 3335578999999997642 332222333333344444 6889999998
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=94.96 E-value=0.001 Score=69.59 Aligned_cols=63 Identities=13% Similarity=-0.010 Sum_probs=41.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++.+++.+.| +...+++++++.. +++..+.++|++ |||||||++.|++...+ ..|+|.+-+.+
T Consensus 31 ie~~~~~~~~--~~~~~~~~l~~~~-----~~~~~i~i~G~~-----g~GKSTl~~~l~~~~~~---~~~~v~v~~~d 93 (341)
T 2p67_A 31 VESRHPRHQA--LSTQLLDAIMPYC-----GNTLRLGVTGTP-----GAGKSTFLEAFGMLLIR---EGLKVAVIAVD 93 (341)
T ss_dssp HHCCCHHHHH--HHHHHHHHHGGGC-----SCSEEEEEEECT-----TSCHHHHHHHHHHHHHH---TTCCEEEEEEC
T ss_pred hhcCCchhhh--HHHHHHHhCCccc-----CCCEEEEEEcCC-----CCCHHHHHHHHHHHHHh---cCCeEEEEeec
Confidence 4556666654 4455666666544 455566666665 89999999999998765 24556554443
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.054 Score=58.48 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=38.4
Q ss_pred cChHHHHHHHHHHHHh--hCCC--eEEEeCCCCCC------C-HHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 172 LSGGERKRLSFATELL--TDPA--LLLCDEPTTGL------D-SFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~--~~P~--lLlLDEPTsgL------D-~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
+|-.+-+ +.++.+. .+|+ ++++|--+.-- + .....++.+.|+.++++.|.+||+++|-
T Consensus 291 ~s~~~i~--~~ir~l~~~~~~~~~lIVID~Lq~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql 359 (444)
T 3bgw_A 291 QSVNYIW--SKTRQTKRKNPGKRVIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQL 359 (444)
T ss_dssp CBHHHHH--HHHHHHHHHSCSSCEEEEEECSTTSBCSCSSSCHHHHHHHHHHHHHHHHHHHTCEEEEEEEC
T ss_pred CCHHHHH--HHHHHHHHHhCCCCeEEEEecHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecC
Confidence 5554432 2344444 4799 99999654211 1 2234567788899999889999999994
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=94.80 E-value=0.0023 Score=71.24 Aligned_cols=52 Identities=8% Similarity=-0.102 Sum_probs=35.2
Q ss_pred cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 30 GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 30 g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
++..++.++++++ +++.+++.|+| |+|||||+++|++...+ ..|+|.+.|..
T Consensus 94 ~~~~~l~~~~~~~------~g~~vll~Gp~-----GtGKTtlar~ia~~l~~---~~~~i~~~~~~ 145 (543)
T 3m6a_A 94 LEYLAVQKLTKSL------KGPILCLAGPP-----GVGKTSLAKSIAKSLGR---KFVRISLGGVR 145 (543)
T ss_dssp HHHHHHHHHSSSC------CSCEEEEESSS-----SSSHHHHHHHHHHHHTC---EEEEECCCC--
T ss_pred HHHHHHHHhcccC------CCCEEEEECCC-----CCCHHHHHHHHHHhcCC---CeEEEEecccc
Confidence 3344455555544 45556666554 89999999999999876 47888777643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.76 E-value=0.013 Score=54.09 Aligned_cols=26 Identities=12% Similarity=-0.033 Sum_probs=20.1
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
..++++|++ |||||||+++|++++.+
T Consensus 5 ~~i~l~G~~-----GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPM-----GAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCT-----TSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCC-----CCCHHHHHHHHHHHhCC
Confidence 455666665 89999999999997643
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=94.73 E-value=0.0088 Score=57.43 Aligned_cols=27 Identities=22% Similarity=0.151 Sum_probs=20.2
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++.++++|+ ||||||||++.|.+..+
T Consensus 18 ~g~~ivl~GP-----SGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGA-----SGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECC-----TTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECc-----CCCCHHHHHHHHHhhCC
Confidence 3445555555 48999999999998765
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.0054 Score=58.33 Aligned_cols=50 Identities=10% Similarity=0.157 Sum_probs=27.5
Q ss_pred hCCCeEEEeCCCC-CCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHh
Q psy2519 188 TDPALLLCDEPTT-GLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELID 238 (622)
Q Consensus 188 ~~P~lLlLDEPTs-gLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~ 238 (622)
.++++|++||+-. .++.....+++ .++..... .+..+|++|+.+..++..
T Consensus 114 ~~~~~lilDei~~~~~~~~~~~~ll~~~l~~~~~-~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 114 KKVPVLMLDDLGAEAMSSWVRDDVFGPILQYRMF-ENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp HHSSEEEEEEECCC---CCGGGTTHHHHHHHHHH-TTCCEEEEESSCHHHHHH
T ss_pred cCCCEEEEcCCCCCcCCHHHHHHHHHHHHHHHHh-CCCCEEEEcCCCHHHHHH
Confidence 4678999999932 23333344344 45555434 456677776654445443
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=94.51 E-value=0.026 Score=54.40 Aligned_cols=44 Identities=7% Similarity=0.175 Sum_probs=30.1
Q ss_pred hCCCeEEEeCCCCCC-CHHHHHHHHHHHHHHHhcCCCE-EEEEeccC
Q psy2519 188 TDPALLLCDEPTTGL-DSFSASKLIRMMRELTSQRKKT-VLCTIHQP 232 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL-D~~~~~~i~~~l~~l~~~~g~t-vi~~tH~~ 232 (622)
.+|.++++||.-.-- +......+.+.+.+... .+.. +|++++..
T Consensus 103 ~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~-~~~~~ii~~~~~~ 148 (242)
T 3bos_A 103 EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAE-QKRGSLIVSASAS 148 (242)
T ss_dssp GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHH-HCSCEEEEEESSC
T ss_pred cCCCEEEEeccccccCCHHHHHHHHHHHHHHHH-cCCCeEEEEcCCC
Confidence 458999999965422 23337778888888876 4554 77777753
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=94.51 E-value=0.016 Score=62.38 Aligned_cols=28 Identities=14% Similarity=-0.025 Sum_probs=23.6
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++.++++|+| ||||||||++|+++..+
T Consensus 25 ~~~~~~i~G~n-----G~GKstll~ai~~~~~~ 52 (430)
T 1w1w_A 25 ESNFTSIIGPN-----GSGKSNMMDAISFVLGV 52 (430)
T ss_dssp TCSEEEEECST-----TSSHHHHHHHHHHHTTC
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHHhhhcc
Confidence 45677777777 89999999999998876
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.46 E-value=0.07 Score=53.33 Aligned_cols=47 Identities=15% Similarity=0.292 Sum_probs=30.5
Q ss_pred HhhCCCeEEEeCCCCC----------CCHHHHHHHHHHHHHHH---hcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPTTG----------LDSFSASKLIRMMRELT---SQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPTsg----------LD~~~~~~i~~~l~~l~---~~~g~tvi~~tH~~ 232 (622)
...+|.+|++||--.- -|......+.+++..+. ...+..+|.+|+.+
T Consensus 107 ~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~ 166 (285)
T 3h4m_A 107 KEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRP 166 (285)
T ss_dssp HHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCG
T ss_pred HHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCc
Confidence 3456889999997331 25556677777777763 21245677788764
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.007 Score=63.38 Aligned_cols=39 Identities=10% Similarity=-0.009 Sum_probs=28.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..+.++|++ |||||||+|.|+|...+ ..|+|.+.+.++
T Consensus 74 ~~~v~lvG~p-----gaGKSTLln~L~~~~~~---~~~~v~V~~~dp 112 (349)
T 2www_A 74 AFRVGLSGPP-----GAGKSTFIEYFGKMLTE---RGHKLSVLAVDP 112 (349)
T ss_dssp CEEEEEECCT-----TSSHHHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred ceEEEEEcCC-----CCCHHHHHHHHHHHhhh---cCCeEEEEeecC
Confidence 3455566665 89999999999998766 257776655544
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.042 Score=51.50 Aligned_cols=50 Identities=14% Similarity=0.183 Sum_probs=25.8
Q ss_pred eeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCC----CC-CceeeEEEECCE
Q psy2519 34 VYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI----DD-CIIDGDIRVNGK 94 (622)
Q Consensus 34 ~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~----~~-~~~~G~I~~~G~ 94 (622)
+++++++.. +..+++++|.+ |+|||||++.+.+... |+ ....+++.++|.
T Consensus 13 ~l~~~~~~~------~~~ki~~vG~~-----~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~ 67 (190)
T 1m2o_B 13 VLASLGLWN------KHGKLLFLGLD-----NAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNI 67 (190)
T ss_dssp -----------------CEEEEEEST-----TSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTE
T ss_pred HHHHhhccC------CccEEEEECCC-----CCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCE
Confidence 456666554 34467777765 7999999999997432 11 113566666653
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.10 E-value=0.0089 Score=58.56 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=38.8
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCC-CCCHHHHHHHHHHHHHHHhcCCCEEEEE-eccCcHHHHhhccc
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTT-GLDSFSASKLIRMMRELTSQRKKTVLCT-IHQPSSELIDMFDK 242 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTs-gLD~~~~~~i~~~l~~l~~~~g~tvi~~-tH~~~~~i~~~~D~ 242 (622)
.+.|.-.+.. ...+.+.+++++||.-. ++|.......++.+.+... .-.+++++ |.+ .+...+++++
T Consensus 161 ~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~-~~~~il~SAT~~-~~~~~~~~~~ 229 (235)
T 3llm_A 161 CTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYP-EVRIVLMSATID-TSMFCEYFFN 229 (235)
T ss_dssp EEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCT-TSEEEEEECSSC-CHHHHHHTTS
T ss_pred ECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCC-CCeEEEEecCCC-HHHHHHHcCC
Confidence 3455555543 33578899999999976 6877666555554444432 22355554 444 3445555543
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=93.85 E-value=0.18 Score=51.58 Aligned_cols=70 Identities=11% Similarity=0.065 Sum_probs=45.0
Q ss_pred HHHHHHHHh---hCCCeEEEeCCCCCCC--------HH----HHHHHHHHHHHHHhcCCCEEEEEeccCc----------
Q psy2519 179 RLSFATELL---TDPALLLCDEPTTGLD--------SF----SASKLIRMMRELTSQRKKTVLCTIHQPS---------- 233 (622)
Q Consensus 179 RvsIA~aL~---~~P~lLlLDEPTsgLD--------~~----~~~~i~~~l~~l~~~~g~tvi~~tH~~~---------- 233 (622)
-+..++.++ .+|+++++|.-+.-.. .. ...+++..|++++++.|.+||++.|-..
T Consensus 191 ~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~~~~~~r~~~~~~~~~~L~~la~~~~~~vi~~nq~~~~~~~~~g~~~ 270 (322)
T 2i1q_A 191 FAEKIEDLIQEGNNIKLVVIDSLTSTFRNEYTGRGKLAERQQKLGRHMATLNKLADLFNCVVLVTNQVSAKPDAFFGMAE 270 (322)
T ss_dssp HHHTHHHHHHTTCEEEEEEEECSSHHHHHHCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCEEEEEECEECC-------CC
T ss_pred HHHHHHHHHhhccCccEEEEECcHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECceeecCCCCCCCCc
Confidence 344455566 3589999999875321 11 2356677778888878999999877421
Q ss_pred -----HHHHhhccceeeecC
Q psy2519 234 -----SELIDMFDKIILLAD 248 (622)
Q Consensus 234 -----~~i~~~~D~v~~L~~ 248 (622)
..+.+.+|.++.|+.
T Consensus 271 ~~~g~~~~~~~~d~~i~l~~ 290 (322)
T 2i1q_A 271 QAIGGHIVGHAATFRFFVRK 290 (322)
T ss_dssp EESSHHHHHHHCSEEEEEEE
T ss_pred CCCCcHHHHhcCcEEEEEEe
Confidence 124556677777753
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=93.77 E-value=0.7 Score=50.40 Aligned_cols=69 Identities=14% Similarity=0.202 Sum_probs=47.3
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCC-------CH-HHHHHHHHHHHHHHhcCCCEEEEEeccCc--------------
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGL-------DS-FSASKLIRMMRELTSQRKKTVLCTIHQPS-------------- 233 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgL-------D~-~~~~~i~~~l~~l~~~~g~tvi~~tH~~~-------------- 233 (622)
+-++.++.++ .+|+++++|=-+. + +. ....++.+.|++++++.|.+||+++|-..
T Consensus 341 ~i~~~i~~~~~~~~~~lvVID~l~~-l~~~~~~~~~~~~~~~~~~~Lk~lak~~~i~vi~~~q~~r~~~~~~~~~~~~p~ 419 (503)
T 1q57_A 341 RLLAKLAYMRSGLGCDVIILDHISI-VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVS 419 (503)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTC-CCSCCSCCCHHHHHHHHHHHHHHHHHHHTCEEEEEEECCCCSSSSCSTTCCCCC
T ss_pred HHHHHHHHHHHhcCCCEEEEccchh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHCCeEEEEEcCCchhccCccccCCCCC
Confidence 3444555554 4699999995433 2 21 33456888889999888999999998532
Q ss_pred -------HHHHhhccceeeec
Q psy2519 234 -------SELIDMFDKIILLA 247 (622)
Q Consensus 234 -------~~i~~~~D~v~~L~ 247 (622)
..+.+.+|-|+.|.
T Consensus 420 l~dlr~s~~ie~~aD~vi~l~ 440 (503)
T 1q57_A 420 ITDLRGSGALRQLSDTIIALE 440 (503)
T ss_dssp SSSCSSSSHHHHHCSEEEEEE
T ss_pred hhhhccchHhhecCcEEEEEE
Confidence 13566788888885
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=93.59 E-value=0.042 Score=58.97 Aligned_cols=40 Identities=0% Similarity=-0.204 Sum_probs=29.8
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++.+.++|++ ||||||++..|++.+.+. .|+|.+.+.|..
T Consensus 98 ~~vi~i~G~~-----GsGKTT~~~~LA~~l~~~---g~~Vllvd~D~~ 137 (425)
T 2ffh_A 98 RNLWFLVGLQ-----GSGKTTTAAKLALYYKGK---GRRPLLVAADTQ 137 (425)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHHHHHHTT---TCCEEEEECCSS
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHHHHHc---CCeEEEeecccc
Confidence 4445555543 899999999999998873 678888776653
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=93.49 E-value=0.02 Score=54.29 Aligned_cols=35 Identities=23% Similarity=0.294 Sum_probs=24.2
Q ss_pred eeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 33 QVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 33 ~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++++++.. +..+++++|.+ |+|||||++.+.+.
T Consensus 14 ~~l~~~~~~~------~~~ki~lvG~~-----~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 14 SVLQFLGLYK------KTGKLVFLGLD-----NAGKTTLLHMLKDD 48 (198)
T ss_dssp HHHHHHTCTT------CCEEEEEEEET-----TSSHHHHHHHHSCC
T ss_pred HHHHHhhccC------CCcEEEEECCC-----CCCHHHHHHHHhcC
Confidence 4455555432 33466777775 79999999999874
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.037 Score=50.30 Aligned_cols=22 Identities=23% Similarity=0.249 Sum_probs=18.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHh
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFL 76 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~ 76 (622)
++..+|+|+| ||||||+|++|.
T Consensus 23 ~g~~~I~G~N-----GsGKStil~Ai~ 44 (149)
T 1f2t_A 23 EGINLIIGQN-----GSGKSSLLDAIL 44 (149)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHH
T ss_pred CCeEEEECCC-----CCCHHHHHHHHH
Confidence 4567777777 799999999986
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.25 E-value=0.37 Score=50.18 Aligned_cols=16 Identities=19% Similarity=0.142 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.|+...
T Consensus 126 pGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 126 PGTGKTLIGKCIASQS 141 (357)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5899999999998754
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.07 Score=51.83 Aligned_cols=61 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred hhCCCeEEEeCCCC----CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH---------HHHhhccceeeec
Q psy2519 187 LTDPALLLCDEPTT----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSS---------ELIDMFDKIILLA 247 (622)
Q Consensus 187 ~~~P~lLlLDEPTs----gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~---------~i~~~~D~v~~L~ 247 (622)
-.+|+++++|--+. .-|.....++...|++++++.|.+++++.|.... .+...+|-|+.|.
T Consensus 133 ~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 133 AINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred hcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 35789999986432 2255667788889999998889999999986321 1234678777774
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.26 Score=48.21 Aligned_cols=16 Identities=13% Similarity=0.218 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.++...
T Consensus 48 ~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 48 PGCGKTLLAKAVATEA 63 (262)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999998754
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.68 E-value=0.088 Score=55.85 Aligned_cols=39 Identities=15% Similarity=0.138 Sum_probs=28.1
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCC-----------CCCCCceeeEEEECCE
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQ-----------VIDDCIIDGDIRVNGK 94 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~-----------~~~~~~~~G~I~~~G~ 94 (622)
..+.++.++|.| |+|||||+|.|+|. ..| ..|.+.+.|.
T Consensus 20 ~~~~kvgIVG~p-----nvGKSTL~n~Ltg~~~~~~~~p~tTi~p---~~g~v~v~~~ 69 (396)
T 2ohf_A 20 GTSLKIGIVGLP-----NVGKSTFFNVLTNSQASAENFPFCTIDP---NESRVPVPDE 69 (396)
T ss_dssp SSCCCEEEECCS-----SSSHHHHHHHHHC-------------CC---SEEEEECCCH
T ss_pred cCCCEEEEECCC-----CCCHHHHHHHHHCCCccccCCCccccCc---eeEEEEECCc
Confidence 345567777776 79999999999998 333 3688887764
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.64 E-value=1.2 Score=45.63 Aligned_cols=16 Identities=19% Similarity=0.235 Sum_probs=14.2
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||.+.++...
T Consensus 54 pGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 54 PGTGKSYLAKAVATEA 69 (322)
T ss_dssp SSSCHHHHHHHHHHHT
T ss_pred CCccHHHHHHHHHHHc
Confidence 5899999999999765
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=92.23 E-value=1.2 Score=46.68 Aligned_cols=72 Identities=11% Similarity=0.084 Sum_probs=43.9
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCC-----CH--------HHHHHHHHHHHHH---HhcCCCEEEEEeccCcHH----
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGL-----DS--------FSASKLIRMMREL---TSQRKKTVLCTIHQPSSE---- 235 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgL-----D~--------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~~---- 235 (622)
+-+.+++.++ .+++++++|..+.=. |. ...+++.+.+++| +++.+.+||++.|-. ..
T Consensus 139 ~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~L~~~a~~~~~~VI~~nq~~-~~~~~~ 217 (366)
T 1xp8_A 139 QALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRKLTAILSKTGTAAIFINQVR-EKIGVM 217 (366)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHHHHHHHTTTCCEEEEEEEC--------
T ss_pred HHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCEEEEEEecc-cccCcc
Confidence 3445666666 469999999998643 11 1223445555555 676789998888752 21
Q ss_pred ------------HHhhccceeeecCCc
Q psy2519 236 ------------LIDMFDKIILLADSR 250 (622)
Q Consensus 236 ------------i~~~~D~v~~L~~G~ 250 (622)
+...+|-++.|..++
T Consensus 218 fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 218 YGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp --------CHHHHHHHCSEEEEEEEES
T ss_pred cCCccccCCcchhhheeeEEEEEEecc
Confidence 345567777776554
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.13 Score=53.28 Aligned_cols=44 Identities=11% Similarity=-0.016 Sum_probs=23.6
Q ss_pred CCCeEEEeCCCCCCCHH-HHHHHHHHHHHHHh---cCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSF-SASKLIRMMRELTS---QRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~-~~~~i~~~l~~l~~---~~g~tvi~~tH~~ 232 (622)
+|.+|++||.-.-.+.. ....+.++++.... ..+..+|++++++
T Consensus 130 ~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 130 GIYIIVLDEIDFLPKRPGGQDLLYRITRINQELGDRVWVSLVGITNSL 177 (387)
T ss_dssp SEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----CEEEEECSCS
T ss_pred CeEEEEEccHhhhcccCCCChHHHhHhhchhhcCCCceEEEEEEECCC
Confidence 36799999985432211 23333344433321 2456889999875
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=91.84 E-value=0.078 Score=48.25 Aligned_cols=24 Identities=13% Similarity=0.192 Sum_probs=19.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.++|...
T Consensus 5 ~v~lvG~~-----gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNP-----NVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECST-----TSSHHHHHHHHHCCSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCe
Confidence 45666665 8999999999998654
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=1.2 Score=55.47 Aligned_cols=73 Identities=11% Similarity=0.068 Sum_probs=47.7
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHH---HHhcCCCEEEEEeccC-------
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMRE---LTSQRKKTVLCTIHQP------- 232 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTsgLD-~------------~~~~~i~~~l~~---l~~~~g~tvi~~tH~~------- 232 (622)
+-...++.++ .+|+++++|+.+.-.. + ...+++.+.+++ ++++.|.+||++.|..
T Consensus 797 ei~~~l~~lv~~~~~~lVVIDsLq~l~~~~e~~~~~G~~~~~~q~reis~~Lr~Lk~lAke~gi~VIlinql~r~~g~~~ 876 (1706)
T 3cmw_A 797 QALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMF 876 (1706)
T ss_dssp HHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCS
T ss_pred HHHHHHHHHHHccCCCEEEEechhhhccccccccccCccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 3444555444 5799999999987652 1 123445555555 4676899999998831
Q ss_pred --------cHHHHhhccceeeecCCc
Q psy2519 233 --------SSELIDMFDKIILLADSR 250 (622)
Q Consensus 233 --------~~~i~~~~D~v~~L~~G~ 250 (622)
+..+.+.+|-++.+.+++
T Consensus 877 Gdp~~p~gs~~Leq~ADvvl~L~R~~ 902 (1706)
T 3cmw_A 877 GNPETTTGGNALKFYASVRLDIRRIG 902 (1706)
T ss_dssp SCCEEESSCSHHHHHEEEEEEEEEEE
T ss_pred CCccccCCcchhhheeeEEEEEEecc
Confidence 124677788888886443
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.063 Score=50.30 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=22.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
||||||||++.|.+.+.+....-|.|..++++
T Consensus 15 sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 15 SGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp TTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred CCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 58999999999998764321235777776644
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=91.70 E-value=0.037 Score=53.03 Aligned_cols=29 Identities=17% Similarity=0.134 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHhCCCCCCCceee--EEEECCEe
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDG--DIRVNGKP 95 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G--~I~~~G~~ 95 (622)
+||||||+.+.|++.+.| ..| .+.++|..
T Consensus 34 ~GsGKsT~~~~l~~~l~~---~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 34 SASGKSTLAVELEHQLVR---DRRVHAYRLDGDN 64 (211)
T ss_dssp TTSSHHHHHHHHHHHHHH---HHCCCEEEECHHH
T ss_pred CCCCHHHHHHHHHHHhcc---ccCCcEEEECChH
Confidence 489999999999998864 256 77777544
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=91.23 E-value=0.91 Score=46.62 Aligned_cols=58 Identities=14% Similarity=0.197 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHH--h--hCCCeEEEeCCCCCC-----CH----------HHHHHHHHHHHH---HHhcCCCEEEEEeccC
Q psy2519 175 GERKRLSFATEL--L--TDPALLLCDEPTTGL-----DS----------FSASKLIRMMRE---LTSQRKKTVLCTIHQP 232 (622)
Q Consensus 175 GqrqRvsIA~aL--~--~~P~lLlLDEPTsgL-----D~----------~~~~~i~~~l~~---l~~~~g~tvi~~tH~~ 232 (622)
+|++.+.++.+| + .+|++++.|=-++=. +. ..++.+-+.|++ ++++.|.++|++-|-.
T Consensus 93 ~E~~~l~i~~~l~~i~~~~~~lvVIDSI~aL~~~~eieg~~gd~~~gsv~qaR~~s~~LrkL~~~ak~~~i~vi~tNQV~ 172 (333)
T 3io5_A 93 LEQLRIDMVNQLDAIERGEKVVVFIDSLGNLASKKETEDALNEKVVSDMTRAKTMKSLFRIVTPYFSTKNIPCIAINHTY 172 (333)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEECSTTCBCC--------------CTHHHHHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHhhccCceEEEEecccccccchhccCccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEECCee
Confidence 455556666665 3 369999999766542 11 123344455544 5677899999999973
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=91.22 E-value=0.062 Score=52.54 Aligned_cols=40 Identities=10% Similarity=0.059 Sum_probs=21.6
Q ss_pred eEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 35 YAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 35 l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
|.++|+.+ ...+++..+++.|+ |||||||+++.|+..+.+
T Consensus 13 ~~~~~~~~--~~~~~g~~i~i~G~-----~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 13 LGTENLYF--QSNAMSAFITFEGP-----EGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp -------C--CCCCCCEEEEEECC-----TTSCHHHHHHHHHHHHTT
T ss_pred ccCCCeeE--eecCCCeEEEEEcC-----CCCCHHHHHHHHHHHHhc
Confidence 45555544 11123444444444 489999999999988764
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=91.09 E-value=0.1 Score=49.89 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
.+..+|.|+| ||||||++++|.-
T Consensus 23 ~~~~~I~G~N-----gsGKStil~ai~~ 45 (203)
T 3qks_A 23 EGINLIIGQN-----GSGKSSLLDAILV 45 (203)
T ss_dssp SEEEEEECCT-----TSSHHHHHHHHHH
T ss_pred CCeEEEEcCC-----CCCHHHHHHHHHH
Confidence 4566777777 7999999998853
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=91.08 E-value=0.31 Score=53.01 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=50.8
Q ss_pred ccccChHHHHHHHHHH--HHhh---------------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 169 KVVLSGGERKRLSFAT--ELLT---------------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~--aL~~---------------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
-+++||||+|-.-+|+ +++. .-.++++||. +-+|...+...+++++++ |.-+|+++=+
T Consensus 377 ~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l----glQliiatP~ 451 (483)
T 3euj_A 377 SSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL----DMQLLIAAPE 451 (483)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT----TCEEEEEESS
T ss_pred cCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc----CCEEEEECcc
Confidence 4569999999744443 3333 1247999999 999999999999999965 6667777644
Q ss_pred CcHHHHhhccceeeec
Q psy2519 232 PSSELIDMFDKIILLA 247 (622)
Q Consensus 232 ~~~~i~~~~D~v~~L~ 247 (622)
.+....|.++.+-
T Consensus 452 ---~i~p~v~~~~~~~ 464 (483)
T 3euj_A 452 ---NISPERGTTYKLV 464 (483)
T ss_dssp ---SCCCSSSEEEECC
T ss_pred ---hhhhccCceEEEE
Confidence 3445567776663
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=90.92 E-value=0.1 Score=48.36 Aligned_cols=23 Identities=13% Similarity=0.189 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.++|..
T Consensus 4 kv~ivG~~-----gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNT-----GSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCT-----TSSHHHHHHHHTCC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34566554 899999999999864
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.11 Score=49.20 Aligned_cols=20 Identities=10% Similarity=0.002 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
+.+.|++ ||||||+.+.|++
T Consensus 4 i~i~G~~-----GsGKSTl~~~L~~ 23 (204)
T 2if2_A 4 IGLTGNI-----GCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEECT-----TSSHHHHHHHHHH
T ss_pred EEEECCC-----CcCHHHHHHHHHH
Confidence 4556665 8999999999998
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=90.51 E-value=0.15 Score=48.44 Aligned_cols=28 Identities=25% Similarity=0.177 Sum_probs=20.6
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++..+++.|+ ||||||||.+.|+...+
T Consensus 10 ~~~~~i~l~G~-----sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGP-----SGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECC-----TTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECC-----CCCCHHHHHHHHHHhCc
Confidence 34555555555 48999999999987653
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=90.07 E-value=0.19 Score=47.88 Aligned_cols=70 Identities=17% Similarity=0.205 Sum_probs=52.9
Q ss_pred HHHHHHHHHh--hCCCeEEEeCCCC--CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 178 KRLSFATELL--TDPALLLCDEPTT--GLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 178 qRvsIA~aL~--~~P~lLlLDEPTs--gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
+.+.-++..+ .+.++++|||.+. .++-....+++++|.+- -.+..||+|..++.+++.+++|-|--|..-
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~R--p~~~~vIlTGr~ap~~l~e~AD~VTem~~v 180 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNAR--PGHQTVIITGRGCHRDILDLADTVSELRPV 180 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTS--CTTCEEEEECSSCCHHHHHHCSEEEECCCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhC--cCCCEEEEECCCCcHHHHHhCcceeeecce
Confidence 3455566666 5679999999976 34444556788888753 247899999999999999999999999754
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=90.00 E-value=0.17 Score=52.90 Aligned_cols=28 Identities=21% Similarity=0.405 Sum_probs=22.7
Q ss_pred cChHHHHHHHHHHHH---hh--CCCeEEEeCCC
Q psy2519 172 LSGGERKRLSFATEL---LT--DPALLLCDEPT 199 (622)
Q Consensus 172 LSgGqrqRvsIA~aL---~~--~P~lLlLDEPT 199 (622)
+|+||+||..++++| .. +++++++|||+
T Consensus 297 ~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 297 SLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ----CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 899999999999999 76 89999999997
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=89.76 E-value=0.18 Score=46.31 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.0
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+.+.|+..+.
T Consensus 12 ~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 12 SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp TTSSHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHhcC
Confidence 69999999999998664
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=89.48 E-value=1.9 Score=53.62 Aligned_cols=70 Identities=11% Similarity=0.068 Sum_probs=46.5
Q ss_pred HHHHHHh--hCCCeEEEeCCCCCCCH-------------HHHHHHHHHHHHH---HhcCCCEEEEEeccCc---------
Q psy2519 181 SFATELL--TDPALLLCDEPTTGLDS-------------FSASKLIRMMREL---TSQRKKTVLCTIHQPS--------- 233 (622)
Q Consensus 181 sIA~aL~--~~P~lLlLDEPTsgLD~-------------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~--------- 233 (622)
.+++.++ .+|+++++|..++=... ...+++.+.++++ +++.|.+||++.|...
T Consensus 451 ~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~ 530 (1706)
T 3cmw_A 451 EICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNP 530 (1706)
T ss_dssp HHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCC
T ss_pred HHHHHHHHhcCCCEEEECCHHHhhccccccccccccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCC
Confidence 4555554 57999999999876641 1223444555555 5667999999988521
Q ss_pred ------HHHHhhccceeeecCCc
Q psy2519 234 ------SELIDMFDKIILLADSR 250 (622)
Q Consensus 234 ------~~i~~~~D~v~~L~~G~ 250 (622)
..+...+|-++.+...+
T Consensus 531 ~~p~gg~ale~~ADv~L~L~R~~ 553 (1706)
T 3cmw_A 531 ETTTGGNALKFYASVRLDIRRIG 553 (1706)
T ss_dssp EEESSCSHHHHHEEEEEEEEEEE
T ss_pred ccCCCCcceeeeCCEEEEEEecc
Confidence 24667889888876543
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=89.40 E-value=1.2 Score=56.17 Aligned_cols=73 Identities=12% Similarity=0.084 Sum_probs=48.9
Q ss_pred HHHHHHHHh--hCCCeEEEeCCCCCCC-H------------HHHHHHHHHHHHH---HhcCCCEEEEEeccCcH------
Q psy2519 179 RLSFATELL--TDPALLLCDEPTTGLD-S------------FSASKLIRMMREL---TSQRKKTVLCTIHQPSS------ 234 (622)
Q Consensus 179 RvsIA~aL~--~~P~lLlLDEPTsgLD-~------------~~~~~i~~~l~~l---~~~~g~tvi~~tH~~~~------ 234 (622)
-+.+++.++ .+|+++++|.-++-.. + ...+++.+.+++| +++.|.+||++.|-...
T Consensus 449 il~~~~~lv~~~~~~lIVIDSL~al~~~~e~eg~~Gd~~~~~q~R~is~~Lr~L~~lake~~i~VIlinQl~~~vg~~~g 528 (2050)
T 3cmu_A 449 ALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFG 528 (2050)
T ss_dssp HHHHHHHHHHHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTTCEEEEEECCEECTTCCSS
T ss_pred HHHHHHHHHHhcCCcEEEECCHHHhhcccccccccccchhhHHHHHHHHHHHHHHHHHHHcCCeEEEEeecccccccccC
Confidence 455666665 4799999999876552 1 1234455666666 57789999999884211
Q ss_pred ---------HHHhhccceeeecCCce
Q psy2519 235 ---------ELIDMFDKIILLADSRT 251 (622)
Q Consensus 235 ---------~i~~~~D~v~~L~~G~i 251 (622)
.+...+|-++.|...+.
T Consensus 529 ~p~~psGg~ale~~ADv~l~L~R~~~ 554 (2050)
T 3cmu_A 529 NPETTTGGNALKFYASVRLDIRRIGA 554 (2050)
T ss_dssp CCEECSSHHHHHHHEEEEEEEEEEEE
T ss_pred CCcCCCCcchhhhhCCEEEEEEeccc
Confidence 36677899988875543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=89.38 E-value=0.19 Score=47.48 Aligned_cols=16 Identities=6% Similarity=-0.095 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|++.+
T Consensus 27 ~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 27 SGSGKSSVGEAIAEAC 42 (202)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999999754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=88.97 E-value=0.33 Score=44.99 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=15.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ki~ivG~~-----~vGKSsL~~~~~~~~ 44 (184)
T 3ihw_A 22 KVGIVGNL-----SSGKSALVHRYLTGT 44 (184)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555543 899999997666543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=88.97 E-value=0.68 Score=47.62 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=24.2
Q ss_pred eEEEeCCCCCCC-----------HHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 192 LLLCDEPTTGLD-----------SFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 192 lLlLDEPTsgLD-----------~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
++++||-.+=-. .....+++..|..++++.|.|+|++++.
T Consensus 185 LLVIDsI~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp 235 (331)
T 2vhj_A 185 VIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP 235 (331)
T ss_dssp EEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC
T ss_pred EEEEecccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCC
Confidence 888888665211 1223344444555555578999998874
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=88.84 E-value=0.27 Score=51.56 Aligned_cols=23 Identities=13% Similarity=0.133 Sum_probs=18.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHh
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFL 76 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~ 76 (622)
.++-.+|.|+| ||||||+|.+|.
T Consensus 24 ~~gl~vi~G~N-----GaGKT~ileAI~ 46 (371)
T 3auy_A 24 EKGIVAIIGEN-----GSGKSSIFEAVF 46 (371)
T ss_dssp CSEEEEEEECT-----TSSHHHHHHHHH
T ss_pred CCCeEEEECCC-----CCCHHHHHHHHH
Confidence 34677777777 899999999986
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=88.50 E-value=0.23 Score=49.52 Aligned_cols=49 Identities=16% Similarity=0.128 Sum_probs=37.6
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 198 PTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||+++.....++.+.+.+..++.+.+.....|.. +++.+.++++.-.-
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~-~~~e~~~~~l~~~~ 192 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYD-EDIEREIKHISELL 192 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCC-HHHHHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCC-HHHHHHHHHHHHHH
Confidence 89999999999999999998875555556677774 67877777765443
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=88.47 E-value=0.22 Score=44.65 Aligned_cols=23 Identities=26% Similarity=0.167 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.|...
T Consensus 5 i~~vG~~-----~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAP-----GVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHCCC--
T ss_pred EEEECCC-----CCCHHHHHHHHcCccc
Confidence 4556654 8999999999998654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=88.36 E-value=0.22 Score=46.30 Aligned_cols=18 Identities=6% Similarity=0.093 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
+||||||+.+.|+..+.+
T Consensus 22 ~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 22 PGSGKTTIATRLADLLQK 39 (186)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 489999999999988764
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=88.17 E-value=0.17 Score=49.89 Aligned_cols=28 Identities=7% Similarity=0.152 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
|||||||+.+.|+..+.. |.+.++|..+
T Consensus 41 ~GsGKSTla~~L~~~l~~-----~~~~~~~D~~ 68 (253)
T 2p5t_B 41 SGAGKTTIHRIKQKEFQG-----NIVIIDGDSF 68 (253)
T ss_dssp GGGTTHHHHHHHHHHTTT-----CCEEECGGGG
T ss_pred CCCCHHHHHHHHHHhcCC-----CcEEEecHHH
Confidence 489999999999987642 4566776544
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.90 E-value=0.23 Score=46.35 Aligned_cols=24 Identities=8% Similarity=0.155 Sum_probs=17.4
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+..+++.|+ |||||||+.+.|+..
T Consensus 10 ~~~I~l~G~-----~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 10 GINILITGT-----PGTGKTSMAEMIAAE 33 (184)
T ss_dssp SCEEEEECS-----TTSSHHHHHHHHHHH
T ss_pred CCEEEEECC-----CCCCHHHHHHHHHHh
Confidence 334445444 489999999999865
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=87.78 E-value=0.34 Score=44.63 Aligned_cols=23 Identities=17% Similarity=0.284 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 25 ~i~v~G~~-----~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRS-----NVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCc
Confidence 45666654 899999999999875
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=87.73 E-value=0.26 Score=44.75 Aligned_cols=16 Identities=6% Similarity=-0.130 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 10 ~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 10 DCCFKSTVAAKLSKEL 25 (173)
T ss_dssp SSSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999998654
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=87.71 E-value=0.42 Score=52.15 Aligned_cols=47 Identities=21% Similarity=0.371 Sum_probs=27.4
Q ss_pred HhhCCCeEEEeCCC----------CCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 186 LLTDPALLLCDEPT----------TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 186 L~~~P~lLlLDEPT----------sgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
--..|.+||+||-- ..++.....++++.+..+....+..||.+|+.+
T Consensus 294 ~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~ 350 (489)
T 3hu3_A 294 EKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATNRP 350 (489)
T ss_dssp HHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCG
T ss_pred HhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceEEEEecCCc
Confidence 34568899999961 222233444455555544333355677788875
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=87.61 E-value=0.25 Score=43.90 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAG-----GVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEECCC-----CCCHHHHHHHHHhCc
Confidence 4555554 899999999998764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=87.61 E-value=0.27 Score=44.10 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (172)
T 2erx_A 6 VAVFGAG-----GVGKSSLVLRFVKGT 27 (172)
T ss_dssp EEEECCT-----TSSHHHHHHHHHTCC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4455554 899999999999854
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.51 E-value=0.28 Score=44.34 Aligned_cols=23 Identities=26% Similarity=0.332 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.|..
T Consensus 6 ki~i~G~~-----~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDP-----GVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCC-
T ss_pred EEEEECCC-----CccHHHHHHHHhcCC
Confidence 44556554 899999999999865
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=87.40 E-value=0.37 Score=44.57 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.|.+..
T Consensus 25 ~i~v~G~~-----~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 25 EIALAGRS-----NVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHHTC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45556554 899999999999864
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=87.38 E-value=0.33 Score=43.99 Aligned_cols=24 Identities=8% Similarity=-0.004 Sum_probs=17.9
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
-+++++|.+ |+|||||++.+.+..
T Consensus 9 ~~i~v~G~~-----~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 9 PVVTIMGHV-----DHGKTTLLDAIRHSK 32 (178)
T ss_dssp CEEEEESCT-----TTTHHHHHHHHHTTC
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCc
Confidence 345555554 899999999998754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=87.19 E-value=0.27 Score=45.48 Aligned_cols=15 Identities=7% Similarity=0.071 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 13 ~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 13 PGAGKGTQASRLAQE 27 (186)
T ss_dssp TTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 489999999999853
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=87.15 E-value=0.26 Score=44.15 Aligned_cols=16 Identities=19% Similarity=0.264 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.+.+..
T Consensus 14 ~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 14 GAVGKSSMIQRYCKGI 29 (168)
T ss_dssp TTSSHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHcCC
Confidence 3899999999998754
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=87.12 E-value=0.76 Score=45.05 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |||||||++.|.|..
T Consensus 24 ~I~lvG~~-----g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKT-----GTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECT-----TSCHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45666654 899999999999865
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=87.10 E-value=0.3 Score=43.86 Aligned_cols=23 Identities=17% Similarity=0.033 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.+...
T Consensus 5 i~ivG~~-----~~GKSsli~~l~~~~~ 27 (169)
T 3q85_A 5 VMLVGES-----GVGKSTLAGTFGGLQG 27 (169)
T ss_dssp EEEECST-----TSSHHHHHHHHHCC--
T ss_pred EEEECCC-----CCCHHHHHHHHHhccC
Confidence 4555554 8999999999987543
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=86.96 E-value=0.34 Score=43.74 Aligned_cols=12 Identities=33% Similarity=0.542 Sum_probs=11.3
Q ss_pred CCCChHHHHHHH
Q psy2519 64 PNVDFSELIRLF 75 (622)
Q Consensus 64 sGaGKSTLl~~l 75 (622)
|||||||+.+.|
T Consensus 10 ~GsGKsT~a~~L 21 (179)
T 3lw7_A 10 PGSGKSEFAKLL 21 (179)
T ss_dssp TTSCHHHHHHHH
T ss_pred CCCCHHHHHHHH
Confidence 599999999999
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.95 E-value=0.3 Score=44.35 Aligned_cols=23 Identities=26% Similarity=0.278 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 11 ~i~v~G~~-----~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDS-----GVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCT-----TSCHHHHHHHHCSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=86.86 E-value=0.27 Score=50.16 Aligned_cols=26 Identities=27% Similarity=0.211 Sum_probs=20.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.|.++++|.+ |||||||+|.|.|..
T Consensus 9 ~~g~v~ivG~~-----nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 9 KVGYVAIVGKP-----NVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEEECST-----TSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCC-----CCcHHHHHHHHhCCC
Confidence 45677777665 799999999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.85 E-value=0.31 Score=45.10 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 50 ~i~vvG~~-----g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 50 SIIIAGPQ-----NSGKTSLLTLLTTDSV 73 (193)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45555554 8999999999998653
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.80 E-value=0.34 Score=44.44 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 4 i~v~G~~-----~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRS-----NVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBT-----TSSHHHHHHHHHSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCcC
Confidence 4556654 899999999999864
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=86.80 E-value=0.39 Score=48.10 Aligned_cols=23 Identities=13% Similarity=0.157 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.|+|..
T Consensus 5 kI~lvG~~-----nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNP-----NSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCC
Confidence 34555554 799999999999964
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=86.68 E-value=0.28 Score=43.70 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 6 ~i~v~G~~-----~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 6 KVIMVGSG-----GVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=86.61 E-value=0.29 Score=43.54 Aligned_cols=22 Identities=32% Similarity=0.318 Sum_probs=17.2
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 4 i~v~G~~-----~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 4 VVIVGRP-----NVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4555554 899999999999865
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.49 E-value=0.36 Score=45.16 Aligned_cols=15 Identities=20% Similarity=-0.011 Sum_probs=13.4
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+||||||+.+.|+..
T Consensus 17 ~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 17 IGSGKSTVAALLRSW 31 (203)
T ss_dssp TTSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHC
Confidence 489999999999965
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=86.34 E-value=0.32 Score=44.12 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 11 ~i~v~G~~-----~~GKssli~~l~~~~ 33 (181)
T 2fn4_A 11 KLVVVGGG-----GVGKSALTIQFIQSY 33 (181)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 44555554 899999999998864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=86.31 E-value=0.3 Score=43.43 Aligned_cols=22 Identities=27% Similarity=0.270 Sum_probs=16.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 6 VVVLGSG-----GVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4555554 899999999998654
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=86.30 E-value=0.36 Score=47.82 Aligned_cols=23 Identities=9% Similarity=0.127 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||+|.|+|..
T Consensus 3 kI~lvG~~-----n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNP-----NCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCC
Confidence 34555554 799999999999974
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=86.28 E-value=0.34 Score=47.08 Aligned_cols=26 Identities=12% Similarity=0.027 Sum_probs=18.9
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++..+.+.|++ ||||||+.+.|++.+
T Consensus 15 ~~~~i~i~G~~-----gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 15 KTIQIAIDGPA-----SSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCEEEEECSS-----CSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCC-----CCCHHHHHHHHHHHc
Confidence 34455555554 899999999999743
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=86.28 E-value=0.32 Score=43.55 Aligned_cols=23 Identities=17% Similarity=0.213 Sum_probs=17.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||++.+.+...
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~~ 28 (170)
T 1g16_A 6 ILLIGDS-----GVGKSCLLVRFVEDKF 28 (170)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHCCC
T ss_pred EEEECcC-----CCCHHHHHHHHHhCCC
Confidence 4556654 8999999999997653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=86.22 E-value=0.38 Score=44.32 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 18 ki~ivG~~-----~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLD-----NAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEEST-----TSSHHHHHHHHCCSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45666654 899999999999763
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=0.35 Score=45.20 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=14.1
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 9 ~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 9 VGAGKSTISAEISKKL 24 (205)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHhc
Confidence 5899999999999754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=86.20 E-value=0.31 Score=43.69 Aligned_cols=23 Identities=22% Similarity=0.280 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDT-----GVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999875
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=86.07 E-value=0.32 Score=43.46 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (167)
T 1c1y_A 6 LVVLGSG-----GVGKSALTVQFVQGI 27 (167)
T ss_dssp EEEECST-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4555554 899999999998754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=86.05 E-value=0.45 Score=49.84 Aligned_cols=37 Identities=22% Similarity=0.057 Sum_probs=24.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC-----C--C-CceeeEEEECC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI-----D--D-CIIDGDIRVNG 93 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~-----~--~-~~~~G~I~~~G 93 (622)
+++++|.+ |+|||||+|.|+|... | + ....|.+.++|
T Consensus 4 kI~IVG~p-----nvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 4 KCGIVGLP-----NVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 45666665 7999999999998431 1 0 01357777766
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=85.90 E-value=0.35 Score=44.59 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=19.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++++|.+ |+|||||++.+.|...+
T Consensus 16 ki~vvG~~-----~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPG-----LSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHTSCG
T ss_pred EEEEECCC-----CCCHHHHHHHHHhhccc
Confidence 34555554 89999999999987654
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=85.89 E-value=0.33 Score=43.55 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEG-----CVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=85.87 E-value=0.33 Score=49.36 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=19.3
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.++++|.+ |+|||||+|.|.|..
T Consensus 8 g~V~ivG~~-----nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKP-----NVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECST-----TSSHHHHHHHHHTSC
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCc
Confidence 456677665 799999999999864
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.81 E-value=0.33 Score=43.39 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=17.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.. |+|||||++.+.+..
T Consensus 6 i~v~G~~-----~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEA-----AVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CCCHHHHHHHHhcCC
Confidence 4555554 899999999998765
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=85.75 E-value=0.4 Score=43.45 Aligned_cols=23 Identities=22% Similarity=0.225 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ki~v~G~~-----~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDG-----ASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHGGG
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999999754
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=85.72 E-value=0.34 Score=43.93 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ~i~v~G~~-----~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDG-----GVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998754
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=85.70 E-value=0.46 Score=47.96 Aligned_cols=25 Identities=12% Similarity=0.189 Sum_probs=18.4
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
|||||||+.+.|+.... .|.+.+++
T Consensus 42 sGsGKSTla~~L~~~~~-----~~~~~Is~ 66 (287)
T 1gvn_B 42 PGSGKTSLRSAIFEETQ-----GNVIVIDN 66 (287)
T ss_dssp TTSCTHHHHHHHHHHTT-----TCCEEECT
T ss_pred CCCCHHHHHHHHHHHhC-----CCeEEEec
Confidence 69999999999986543 24455654
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=85.42 E-value=0.46 Score=43.98 Aligned_cols=15 Identities=13% Similarity=0.208 Sum_probs=13.1
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+..
T Consensus 14 ~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 14 PATGKTTLSQALATG 28 (193)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999854
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=85.34 E-value=0.36 Score=43.14 Aligned_cols=23 Identities=30% Similarity=0.297 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ~i~v~G~~-----~~GKssli~~l~~~~ 30 (170)
T 1r2q_A 8 KLVLLGES-----AVGKSSLVLRFVKGQ 30 (170)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998743
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.28 E-value=0.42 Score=44.26 Aligned_cols=23 Identities=22% Similarity=0.286 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~vvG~~-----~~GKSsli~~l~~~~ 32 (199)
T 2gf0_A 10 RVVVFGAG-----GVGKSSLVLRFVKGT 32 (199)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCcHHHHHHHHHcCC
Confidence 45555554 899999999998743
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=85.26 E-value=0.37 Score=43.97 Aligned_cols=21 Identities=10% Similarity=0.093 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
+++++|.+ |+|||||++.+.+
T Consensus 20 ~i~v~G~~-----~~GKssli~~l~~ 40 (183)
T 1moz_A 20 RILILGLD-----GAGKTTILYRLQI 40 (183)
T ss_dssp EEEEEEET-----TSSHHHHHHHTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhc
Confidence 45666665 7999999999974
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=85.24 E-value=0.53 Score=44.38 Aligned_cols=16 Identities=13% Similarity=0.104 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 19 ~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 19 DRSGKSTQSKLLVEYL 34 (212)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999998643
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=0.37 Score=43.75 Aligned_cols=23 Identities=22% Similarity=0.359 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 10 ~i~v~G~~-----~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDS-----GVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999998765
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=85.19 E-value=0.45 Score=43.93 Aligned_cols=16 Identities=19% Similarity=0.318 Sum_probs=13.8
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+-.+
T Consensus 12 ~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 12 PGVGSTTSSQLAMDNL 27 (192)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999998644
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=85.03 E-value=0.38 Score=44.04 Aligned_cols=22 Identities=18% Similarity=0.146 Sum_probs=17.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.|.+..
T Consensus 7 i~v~G~~-----~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGAD-----GVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEECCC-----CCCHHHHHHHHHhCC
Confidence 4555554 899999999999765
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=84.94 E-value=0.5 Score=43.51 Aligned_cols=15 Identities=27% Similarity=0.301 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 20 ~GsGKst~~~~l~~~ 34 (180)
T 3iij_A 20 PGVGKTTLGKELASK 34 (180)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999843
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=84.93 E-value=0.41 Score=43.27 Aligned_cols=23 Identities=30% Similarity=0.338 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 16 ~i~v~G~~-----~~GKssli~~l~~~~ 38 (179)
T 2y8e_A 16 KLVFLGEQ-----SVGKTSLITRFMYDS 38 (179)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34556554 899999999998654
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=84.82 E-value=0.51 Score=44.17 Aligned_cols=16 Identities=0% Similarity=-0.056 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+..+
T Consensus 13 ~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 13 DKSGKTTQCMNIMESI 28 (204)
T ss_dssp TTSSHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999999776
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=84.81 E-value=0.39 Score=44.03 Aligned_cols=23 Identities=13% Similarity=0.108 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 13 ki~v~G~~-----~~GKSsli~~l~~~~ 35 (195)
T 3bc1_A 13 KFLALGDS-----GVGKTSVLYQYTDGK 35 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=84.72 E-value=0.4 Score=44.22 Aligned_cols=16 Identities=19% Similarity=0.092 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.|.+..
T Consensus 30 ~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 30 GGVGKSALTIQLIQNH 45 (190)
T ss_dssp TTSSHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHcCC
Confidence 3899999999998764
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=84.70 E-value=0.4 Score=43.33 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 17 ~i~v~G~~-----~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDM-----GVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999999765
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.39 Score=44.48 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 27 ki~v~G~~-----~~GKSsLi~~l~~~~~ 50 (193)
T 2oil_A 27 KVVLIGES-----GVGKTNLLSRFTRNEF 50 (193)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999998543
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.46 Score=43.81 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.+..
T Consensus 9 ki~v~G~~-----~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGES-----SVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCc
Confidence 34555554 899999999999864
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=84.65 E-value=0.57 Score=43.65 Aligned_cols=25 Identities=4% Similarity=0.121 Sum_probs=19.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+++++|.+ |+|||||++.+.|...+
T Consensus 22 ki~~vG~~-----~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 22 RILLMGLR-----RSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHSCCCG
T ss_pred EEEEECCC-----CCCHHHHHHHHHhcCCC
Confidence 55666554 89999999999986543
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=84.50 E-value=0.48 Score=47.37 Aligned_cols=23 Identities=9% Similarity=0.010 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||+|.|+|..
T Consensus 5 ~I~lvG~~-----n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNP-----NSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHTTC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34555554 799999999999864
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.34 E-value=0.51 Score=43.57 Aligned_cols=16 Identities=0% Similarity=-0.176 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+..+
T Consensus 14 ~GsGKst~a~~La~~l 29 (185)
T 3trf_A 14 MGAGKTSVGSQLAKLT 29 (185)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999998543
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=84.23 E-value=0.46 Score=43.47 Aligned_cols=24 Identities=17% Similarity=0.238 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 12 ki~v~G~~-----~~GKSsli~~l~~~~~ 35 (186)
T 2bme_A 12 KFLVIGNA-----GTGKSCLLHQFIEKKF 35 (186)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCCC
Confidence 44556554 8999999999987653
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=84.20 E-value=0.48 Score=42.54 Aligned_cols=23 Identities=9% Similarity=0.054 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ~i~v~G~~-----~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 9 RILILGLD-----GAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999997644
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=84.18 E-value=0.44 Score=43.28 Aligned_cols=24 Identities=17% Similarity=0.180 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 12 ~i~v~G~~-----~~GKssli~~l~~~~~ 35 (180)
T 2g6b_A 12 KVMLVGDS-----GVGKTCLLVRFKDGAF 35 (180)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCCC
Confidence 34555554 8999999999987553
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=84.16 E-value=0.44 Score=43.44 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 20 ki~v~G~~-----~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 20 KVIMVGSG-----GVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhhCC
Confidence 34555554 899999999999754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=84.10 E-value=0.6 Score=42.98 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 18 ~i~v~G~~-----~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 18 KVIIVGLD-----NAGKTTILYQFSMNE 40 (187)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45566654 799999999999643
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=84.08 E-value=0.51 Score=47.66 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|.+ |||||||++.|.|...
T Consensus 26 ~I~vvG~~-----~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQ-----SSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECS-----SSSHHHHHHHHHTSCC
T ss_pred eEEEEcCC-----CCCHHHHHHHHHCCCc
Confidence 46666665 7999999999999753
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=84.05 E-value=0.45 Score=42.45 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=16.4
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 3 i~~~G~~-----~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLD-----AAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECST-----TSSHHHHHHHHHHHC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 3455554 899999999997643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=84.03 E-value=0.45 Score=43.21 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 14 ki~v~G~~-----~~GKSsli~~l~~~~~ 37 (181)
T 2efe_B 14 KLVLLGDV-----GAGKSSLVLRFVKDQF 37 (181)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHCCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCCC
Confidence 34555554 8999999999987643
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=83.96 E-value=0.49 Score=47.11 Aligned_cols=23 Identities=13% Similarity=0.164 Sum_probs=17.3
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|.|...
T Consensus 11 I~vvG~~-----g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 11 LMVVGES-----GLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEECT-----TSSHHHHHHHHSSSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCc
Confidence 3455554 8999999999987643
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=83.88 E-value=0.54 Score=43.09 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++.|+ |||||||+.+.|+..+
T Consensus 7 i~i~G~-----~GsGKsTla~~La~~l 28 (175)
T 1via_A 7 IVFIGF-----MGSGKSTLARALAKDL 28 (175)
T ss_dssp EEEECC-----TTSCHHHHHHHHHHHH
T ss_pred EEEEcC-----CCCCHHHHHHHHHHHc
Confidence 455555 4899999999998654
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=83.83 E-value=0.14 Score=52.89 Aligned_cols=41 Identities=15% Similarity=0.240 Sum_probs=26.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+++++++||.- .|.......+.+.+.+.. .+..+|+++..+
T Consensus 110 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~--~~~~~il~~n~~ 150 (340)
T 1sxj_C 110 GFKLIILDEAD-AMTNAAQNALRRVIERYT--KNTRFCVLANYA 150 (340)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTT--TTEEEEEEESCG
T ss_pred CceEEEEeCCC-CCCHHHHHHHHHHHhcCC--CCeEEEEEecCc
Confidence 47899999974 455566667777776653 244566666554
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.82 E-value=0.41 Score=44.82 Aligned_cols=22 Identities=23% Similarity=0.173 Sum_probs=16.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.|.
T Consensus 25 ki~vvG~~-----~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGES-----GVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHTCCE
T ss_pred EEEEECCC-----CCCHHHHHHHHHhc
Confidence 44555554 89999999999864
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.82 E-value=0.48 Score=44.33 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 26 ki~vvG~~-----~~GKSsli~~l~~~~~ 49 (201)
T 3oes_A 26 KVVILGYR-----CVGKTSLAHQFVEGEF 49 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CcCHHHHHHHHHhCCC
Confidence 45556554 8999999999998653
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=83.80 E-value=0.55 Score=43.03 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ~i~v~G~~-----~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLD-----NAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEET-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45566664 799999999999754
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.68 E-value=0.54 Score=43.88 Aligned_cols=23 Identities=13% Similarity=0.208 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNS-----SVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECST-----TSSHHHHHHHHHTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999865
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.66 E-value=0.5 Score=43.77 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 25 ki~v~G~~-----~~GKSsli~~l~~~~~ 48 (191)
T 3dz8_A 25 KLLIIGNS-----SVGKTSFLFRYADDTF 48 (191)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHHTT
T ss_pred EEEEECCC-----CcCHHHHHHHHhcCCC
Confidence 45566654 7999999999998653
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=83.65 E-value=0.58 Score=43.17 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.3
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+.+.|+-.+.
T Consensus 10 ~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 10 PGVGKSTVLAKVKEILD 26 (194)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999987543
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=83.63 E-value=0.56 Score=46.91 Aligned_cols=24 Identities=8% Similarity=0.159 Sum_probs=19.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.|.|...
T Consensus 28 ~i~vvG~~-----~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQ-----SAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBT-----TSCHHHHHHHHHTSCC
T ss_pred eEEEEeCC-----CCCHHHHHHHHHCCCc
Confidence 56667665 7999999999999753
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.63 E-value=0.5 Score=43.86 Aligned_cols=23 Identities=22% Similarity=0.265 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 25 ki~vvG~~-----~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDT-----GVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCC
Confidence 45556554 899999999998765
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=83.62 E-value=0.57 Score=44.76 Aligned_cols=16 Identities=6% Similarity=0.025 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 13 ~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 13 PGAGKGTQAPNLQERF 28 (220)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc
Confidence 4899999999998643
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.61 E-value=0.46 Score=43.89 Aligned_cols=23 Identities=13% Similarity=0.067 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ki~v~G~~-----~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLD-----NSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECT-----TSSHHHHHHHTSCGG
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45556554 899999999999865
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=83.56 E-value=0.52 Score=46.66 Aligned_cols=16 Identities=25% Similarity=0.351 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+|+|||||++.|+|..
T Consensus 14 ~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 14 PNVGKTSLFNALTGTK 29 (258)
T ss_dssp TTSSHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHCCC
Confidence 4899999999999854
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.54 E-value=0.58 Score=43.81 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 27 ki~v~G~~-----~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSA-----GTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHC--
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 45556554 899999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=83.54 E-value=0.51 Score=43.40 Aligned_cols=23 Identities=17% Similarity=0.322 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ki~v~G~~-----~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDS-----QCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44556554 899999999998764
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=83.52 E-value=0.64 Score=43.82 Aligned_cols=16 Identities=13% Similarity=0.073 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
+||||||+.+.|+-.+
T Consensus 18 ~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 18 DRAGKSTQSRKLVEAL 33 (215)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 4899999999998654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=83.51 E-value=0.18 Score=51.37 Aligned_cols=39 Identities=5% Similarity=-0.110 Sum_probs=27.6
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+..+.++|++ |+||||++..|++...+ ..|+|.+.+.+.
T Consensus 98 ~~vi~i~G~~-----G~GKTT~~~~la~~~~~---~g~~v~l~~~D~ 136 (297)
T 1j8m_F 98 PYVIMLVGVQ-----GTGKTTTAGKLAYFYKK---KGFKVGLVGADV 136 (297)
T ss_dssp SEEEEEECSS-----CSSTTHHHHHHHHHHHH---TTCCEEEEECCC
T ss_pred CeEEEEECCC-----CCCHHHHHHHHHHHHHH---CCCeEEEEecCC
Confidence 4445555443 89999999999998875 256777765554
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=83.43 E-value=0.5 Score=43.71 Aligned_cols=24 Identities=13% Similarity=0.033 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 19 ki~v~G~~-----~~GKSsl~~~l~~~~~ 42 (199)
T 4bas_A 19 QVVMCGLD-----NSGKTTIINQVKPAQS 42 (199)
T ss_dssp EEEEECCT-----TSCHHHHHHHHSCCC-
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45556554 8999999999998643
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=83.43 E-value=0.54 Score=46.06 Aligned_cols=24 Identities=4% Similarity=-0.014 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.+++.|++ |+|||||.++|++...
T Consensus 47 ~vll~G~~-----GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 47 GVLMVGPP-----GTGKTLLAKAIAGEAK 70 (257)
T ss_dssp EEEEECCT-----TSCHHHHHHHHHHHHT
T ss_pred eEEEECcC-----CCCHHHHHHHHHHHcC
Confidence 35555554 8999999999998654
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=83.43 E-value=0.48 Score=44.24 Aligned_cols=23 Identities=22% Similarity=0.372 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDS-----GVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998865
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=83.39 E-value=0.55 Score=44.08 Aligned_cols=18 Identities=11% Similarity=-0.119 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+..+..
T Consensus 13 ~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 13 DGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp TTSSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHHhh
Confidence 589999999999976543
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.36 E-value=0.53 Score=43.73 Aligned_cols=23 Identities=17% Similarity=0.301 Sum_probs=16.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 28 ki~vvG~~-----~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSR-----GVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECST-----TSSHHHHHHHHCC--
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=83.34 E-value=0.58 Score=42.91 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 20 ~i~v~G~~-----~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 20 RLLMLGLD-----NAGKTTILKKFNGED 42 (186)
T ss_dssp EEEEECST-----TSSHHHHHHHHTTCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999999765
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.32 E-value=0.49 Score=43.66 Aligned_cols=24 Identities=21% Similarity=0.199 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 18 ki~v~G~~-----~~GKSsli~~l~~~~~ 41 (196)
T 3tkl_A 18 KLLLIGDS-----GVGKSCLLLRFADDTY 41 (196)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCCC
Confidence 34555554 8999999999998653
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=83.25 E-value=0.68 Score=42.94 Aligned_cols=22 Identities=5% Similarity=0.006 Sum_probs=16.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.+++.|+ |||||||+.+.|+..
T Consensus 11 ~I~l~G~-----~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 11 IIFVVGG-----PGSGKGTQCEKIVQK 32 (196)
T ss_dssp EEEEEEC-----TTSSHHHHHHHHHHH
T ss_pred EEEEECC-----CCCCHHHHHHHHHHH
Confidence 4455555 489999999999854
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=0.5 Score=43.60 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 24 ki~vvG~~-----~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNS-----SVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998765
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=83.23 E-value=0.37 Score=50.74 Aligned_cols=44 Identities=11% Similarity=0.135 Sum_probs=36.0
Q ss_pred CCCeEEEeCCCCCCC---HHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 189 DPALLLCDEPTTGLD---SFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD---~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.|.++++||--.=++ +.....+.+.+++.++ .|..++++||.|.
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk-~g~~~~~~tQ~~~ 308 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRK-YNGSLIVISQNVI 308 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGG-GTCEEEEEESCGG
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhh-hCeEEEEEcCCHH
Confidence 578999999877774 6677778888888776 7999999999974
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=83.20 E-value=0.37 Score=45.72 Aligned_cols=23 Identities=17% Similarity=0.132 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.|..
T Consensus 31 ~i~v~G~~-----~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 31 EIAFAGRS-----NAGKSTAINVLCNQK 53 (223)
T ss_dssp EEEEEESC-----HHHHHHHHHHHTTCS
T ss_pred EEEEEcCC-----CCCHHHHHHHHhCCC
Confidence 45555554 899999999999875
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=83.13 E-value=0.57 Score=44.29 Aligned_cols=24 Identities=17% Similarity=0.243 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|++ |+|||||++.|.+...
T Consensus 14 ~i~~~G~~-----g~GKTsl~~~l~~~~~ 37 (218)
T 1nrj_B 14 SIIIAGPQ-----NSGKTSLLTLLTTDSV 37 (218)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 44555554 8999999999998653
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.12 E-value=0.5 Score=43.99 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 16 ki~v~G~~-----~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 16 KVIMVGSG-----GVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 34555554 899999999998754
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=83.08 E-value=0.51 Score=43.07 Aligned_cols=23 Identities=26% Similarity=0.319 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 20 ki~v~G~~-----~~GKSsl~~~l~~~~ 42 (183)
T 3kkq_A 20 KLVVVGDG-----GVGKSALTIQFFQKI 42 (183)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 34555554 899999999999764
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=82.90 E-value=0.56 Score=42.72 Aligned_cols=23 Identities=30% Similarity=0.192 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 8 ki~~~G~~-----~~GKSsli~~l~~~~ 30 (181)
T 3t5g_A 8 KIAILGYR-----SVGKSSLTIQFVEGQ 30 (181)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 45666664 799999999998543
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=82.89 E-value=0.6 Score=42.56 Aligned_cols=14 Identities=29% Similarity=0.411 Sum_probs=12.9
Q ss_pred CCCChHHHHHHHhC
Q psy2519 64 PNVDFSELIRLFLS 77 (622)
Q Consensus 64 sGaGKSTLl~~l~g 77 (622)
|||||||+.+.|+.
T Consensus 11 ~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 11 PGSGKSTWAREFIA 24 (181)
T ss_dssp TTSSHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHh
Confidence 59999999999986
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=82.83 E-value=0.53 Score=43.96 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=17.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.|.
T Consensus 8 kv~lvG~~-----~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQ-----GVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHH
T ss_pred EEEEECCC-----CCCHHHHHHHHhcC
Confidence 45566554 79999999999863
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=82.55 E-value=0.45 Score=44.22 Aligned_cols=18 Identities=6% Similarity=0.220 Sum_probs=15.2
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
||||||||++.|...++.
T Consensus 13 sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 13 KHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp TTSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHh
Confidence 599999999999987643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=82.48 E-value=0.58 Score=43.80 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 10 ki~v~G~~-----~~GKSsli~~l~~~~~ 33 (206)
T 2bcg_Y 10 KLLLIGNS-----GVGKSCLLLRFSDDTY 33 (206)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 44556554 8999999999987543
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=82.42 E-value=0.56 Score=43.25 Aligned_cols=23 Identities=22% Similarity=0.194 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 22 ki~v~G~~-----~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 22 KIIVIGDS-----NVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=82.33 E-value=0.58 Score=44.12 Aligned_cols=24 Identities=8% Similarity=-0.040 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 9 ki~vvG~~-----~~GKTsli~~l~~~~~ 32 (214)
T 2fh5_B 9 AVLFVGLC-----DSGKTLLFVRLLTGQY 32 (214)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCc
Confidence 45555554 8999999999987543
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=82.29 E-value=0.68 Score=44.09 Aligned_cols=14 Identities=14% Similarity=0.052 Sum_probs=13.0
Q ss_pred CCCChHHHHHHHhC
Q psy2519 64 PNVDFSELIRLFLS 77 (622)
Q Consensus 64 sGaGKSTLl~~l~g 77 (622)
+||||||+.+.|+.
T Consensus 13 ~GSGKST~~~~L~~ 26 (218)
T 1vht_A 13 IGSGKSTVANAFAD 26 (218)
T ss_dssp TTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 58999999999987
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=0.57 Score=43.27 Aligned_cols=23 Identities=4% Similarity=0.008 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 24 ki~v~G~~-----~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 24 ELTLVGLQ-----YSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998654
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=82.13 E-value=0.65 Score=43.87 Aligned_cols=24 Identities=13% Similarity=0.144 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 27 KLLALGDS-----GVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEEESCT-----TSSHHHHHHHHHCSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 34555554 8999999999998654
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=82.10 E-value=0.57 Score=43.35 Aligned_cols=23 Identities=26% Similarity=0.226 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 23 ki~v~G~~-----~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDT-----GVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCC
Confidence 34555554 899999999999754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=82.02 E-value=0.65 Score=44.51 Aligned_cols=23 Identities=17% Similarity=0.215 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|. +|+|||||++.+.+..
T Consensus 31 kI~vvG~-----~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGA-----PNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECS-----TTSSHHHHHHHHTTTC
T ss_pred EEEEECC-----CCCCHHHHHHHHhCCC
Confidence 4455544 3899999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=81.99 E-value=0.6 Score=42.52 Aligned_cols=23 Identities=17% Similarity=0.197 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 7 ~i~~~G~~-----~~GKssl~~~l~~~~ 29 (186)
T 1mh1_A 7 KCVVVGDG-----AVGKTCLLISYTTNA 29 (186)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998643
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=81.93 E-value=0.39 Score=45.42 Aligned_cols=18 Identities=6% Similarity=-0.012 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+..+..
T Consensus 9 ~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 9 DGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEHHHHHHHHHHHHHE
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 489999999999987653
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.83 E-value=0.61 Score=42.91 Aligned_cols=23 Identities=26% Similarity=0.300 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 17 ~i~v~G~~-----~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGES-----GVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 34555554 899999999998764
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=81.81 E-value=0.61 Score=42.34 Aligned_cols=23 Identities=22% Similarity=0.153 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 10 ki~v~G~~-----~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDG-----AVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45555554 899999999998654
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.78 E-value=0.64 Score=43.73 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsli~~l~~~~~ 50 (207)
T 2fv8_A 27 KLVVVGDG-----ACGKTCLLIVFSKDEF 50 (207)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 45666654 7999999999998653
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.75 E-value=0.61 Score=43.33 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 30 ki~v~G~~-----~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 30 KLAIFGRA-----GVGKSALVVRFLTKR 52 (196)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.69 E-value=0.75 Score=43.61 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 36 ki~vvG~~-----~vGKSsli~~l~~~~ 58 (214)
T 2j1l_A 36 KVVLVGDG-----GCGKTSLLMVFADGA 58 (214)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHC--
T ss_pred EEEEECcC-----CCCHHHHHHHHHcCC
Confidence 45555554 899999999999754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=81.60 E-value=0.62 Score=43.13 Aligned_cols=24 Identities=25% Similarity=0.203 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 25 ki~~vG~~-----~~GKSsl~~~l~~~~~ 48 (194)
T 3reg_A 25 KIVVVGDG-----AVGKTCLLLAFSKGEI 48 (194)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECcC-----CCCHHHHHHHHhcCCC
Confidence 44555554 8999999999998653
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.51 E-value=0.66 Score=43.74 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 28 ki~lvG~~-----~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNA-----GVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 45566654 899999999887654
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.43 E-value=0.74 Score=42.82 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=16.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ki~~~G~~-----~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDG-----AVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECST-----TSSHHHHHHHHHC--
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=81.37 E-value=0.62 Score=43.45 Aligned_cols=23 Identities=17% Similarity=0.078 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.+.+..
T Consensus 30 ki~v~G~~-----~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDA-----AVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESST-----TSSHHHHHHHHHHCC
T ss_pred EEEEECcC-----CCCHHHHHHHHHhCC
Confidence 44555544 899999999998764
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.35 E-value=0.67 Score=43.79 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=18.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 30 ki~vvG~~-----~vGKSsLi~~l~~~~~ 53 (205)
T 1gwn_A 30 KIVVVGDS-----QCGKTALLHVFAKDCF 53 (205)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCCC
Confidence 45666554 8999999999998643
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=81.30 E-value=0.71 Score=45.19 Aligned_cols=29 Identities=14% Similarity=0.181 Sum_probs=20.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEeccC
Q psy2519 203 DSFSASKLIRMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 203 D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+|..+..+.+..+++++ .+..+|+.-.+.
T Consensus 110 ~~~vr~~l~~~qr~~a~-~~~~~V~~GRd~ 138 (233)
T 3r20_A 110 VPAVRTRLVDIQRKLAT-EGGRVVVEGRDI 138 (233)
T ss_dssp CHHHHHHHHHHHHHHHT-SSSCEEEEESSC
T ss_pred chHHHHHHHHHHHHHHH-hcCcEEEecccc
Confidence 45678889999999987 413466666654
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=81.11 E-value=0.93 Score=43.29 Aligned_cols=22 Identities=18% Similarity=0.125 Sum_probs=16.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.+++.|+ |||||||+.+.|+-.
T Consensus 7 ~I~l~G~-----~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 7 KVMISGA-----PASGKGTQCELIKTK 28 (222)
T ss_dssp CEEEEES-----TTSSHHHHHHHHHHH
T ss_pred EEEEECC-----CCCCHHHHHHHHHHH
Confidence 4455555 489999999999854
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=81.08 E-value=0.85 Score=42.38 Aligned_cols=23 Identities=0% Similarity=-0.031 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 31 ki~v~G~~-----~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 31 RILMVGLD-----AAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEST-----TSSHHHHHHHHCSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45556554 899999999997643
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=81.06 E-value=0.66 Score=43.46 Aligned_cols=23 Identities=22% Similarity=0.245 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 22 ~i~v~G~~-----~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDS-----GVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 44555554 899999999998754
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=80.98 E-value=0.54 Score=42.71 Aligned_cols=23 Identities=26% Similarity=0.228 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 9 ki~~vG~~-----~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 9 RLGVLGDA-----RSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEECCG-----GGCHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45556554 799999999998754
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=80.83 E-value=0.67 Score=48.61 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=17.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.++|.+ |+|||||++.|++..
T Consensus 4 v~IVG~p-----nvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 4 VGIVGLP-----NVGKSTLFNALTRAN 25 (368)
T ss_dssp EEEECCS-----SSSHHHHHHHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4566665 799999999999863
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=80.79 E-value=0.81 Score=45.18 Aligned_cols=24 Identities=17% Similarity=0.264 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.. |+|||||++.|.|...
T Consensus 38 ~I~lvG~~-----g~GKSSLin~l~~~~~ 61 (262)
T 3def_A 38 TVLVLGKG-----GVGKSSTVNSLIGEQV 61 (262)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHTSCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCCC
Confidence 34555554 8999999999998653
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=80.72 E-value=0.7 Score=42.73 Aligned_cols=23 Identities=26% Similarity=0.236 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 23 ki~vvG~~-----~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 23 NLAILGRR-----GAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCcHHHHHHHHHhCC
Confidence 44555554 899999999988754
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=80.68 E-value=0.74 Score=43.05 Aligned_cols=24 Identities=21% Similarity=0.188 Sum_probs=18.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+++++|.+ |+|||||++.+.+...
T Consensus 27 ki~vvG~~-----~~GKSsli~~l~~~~~ 50 (201)
T 2gco_A 27 KLVIVGDG-----ACGKTCLLIVFSKDQF 50 (201)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCcC
Confidence 45566554 7999999999998543
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=80.60 E-value=0.88 Score=43.69 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.+++.|+ |||||||+.+.|+..+
T Consensus 9 ~I~l~G~-----~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGA-----PGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEEC-----TTSSHHHHHHHHHHHS
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHc
Confidence 3445555 4899999999998543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=80.56 E-value=0.81 Score=43.11 Aligned_cols=16 Identities=13% Similarity=0.268 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||||||||++.|....
T Consensus 10 SG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 10 SGTGKSTLLKKLFAEY 25 (186)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 6999999999997554
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=80.43 E-value=0.83 Score=43.73 Aligned_cols=23 Identities=22% Similarity=0.293 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.|..
T Consensus 39 kVvlvG~~-----~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQ-----GVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHHhCC
Confidence 45666554 899999999999743
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.23 E-value=0.78 Score=43.47 Aligned_cols=23 Identities=13% Similarity=0.036 Sum_probs=17.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||++.|++..
T Consensus 32 ~i~i~G~~-----g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 32 AVNIMGAI-----GSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEECT-----TSCHHHHHHHHHHHH
T ss_pred EEEEEcCC-----CCCHHHHHHHHHHHh
Confidence 44555543 899999999998754
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=80.21 E-value=0.83 Score=42.13 Aligned_cols=15 Identities=7% Similarity=0.096 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
|||||||+.+.|+-.
T Consensus 12 ~GsGKsT~a~~L~~~ 26 (196)
T 1tev_A 12 PGAGKGTQCARIVEK 26 (196)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 589999999999743
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=80.18 E-value=0.93 Score=43.25 Aligned_cols=16 Identities=6% Similarity=0.073 Sum_probs=13.5
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 14 ~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 14 PGSGKGTQCEFIKKEY 29 (217)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999998643
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=80.09 E-value=0.88 Score=45.10 Aligned_cols=23 Identities=13% Similarity=0.183 Sum_probs=17.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.. |+|||||++.|.|..
T Consensus 41 ~I~vvG~~-----g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKG-----GVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34455554 899999999999865
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 622 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 2e-23 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-22 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-21 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 3e-21 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-19 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 5e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-18 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 2e-18 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 6e-18 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-17 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 2e-17 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-17 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-16 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 2e-16 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-16 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-15 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-13 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 3e-10 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 9e-09 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 7e-08 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 8e-04 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 97.2 bits (242), Expect = 2e-23
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 17/173 (9%)
Query: 86 DGDIRVNGKPVEG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKA 137
+G++ ++ R GF++Q P LT E++ + K +
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 138 YQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDE 197
+R L L + LSGG+++R++ A L +P ++L D+
Sbjct: 119 EERRKRALECLKMAELEERFANHKPNQ-------LSGGQQQRVAIARALANNPPIILADQ 171
Query: 198 PTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
PT LDS + K+++++++L + KTV+ H + ++II L D
Sbjct: 172 PTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI--NVARFGERIIYLKDGE 222
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 92.9 bits (231), Expect = 8e-22
Identities = 50/198 (25%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124
S LI L + G I ++G ++ R+ G + Q D S TV E++
Sbjct: 58 STLINLIPRF---YDVTSGQILIDGHNIKDFLTGSLRNQIG-LVQQDNILFSDTVKENIL 113
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
D V ++A + ++ L T +G + LSGG+++RLS A
Sbjct: 114 LGRPTATDEEVVEAAKMANAHDFIMNLP--QGYDTEVGERGVK----LSGGQKQRLSIAR 167
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L +P +L+ DE T+ LD S S + + L + +T L H+ S+ I DKI+
Sbjct: 168 IFLNNPPILILDEATSALDLESESIIQEALDVL--SKDRTTLIVAHRLST--ITHADKIV 223
Query: 245 LLADSRTAFIGSKDAALA 262
++ + G+ +A
Sbjct: 224 VIENGHIVETGTHRELIA 241
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 91.4 bits (227), Expect = 2e-21
Identities = 37/175 (21%), Positives = 72/175 (41%), Gaps = 14/175 (8%)
Query: 86 DGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+G I + V ++Q P +TVYE++ F + ++ +
Sbjct: 60 EGRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKI---KKFPKDEIDKR 116
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ L + + LSGG+R+R++ A ++ +P +LL DEP + LD
Sbjct: 117 VRWAAELLQIEELLNRYPAQ--------LSGGQRQRVAVARAIVVEPDVLLMDEPLSNLD 168
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ + +++L + K T + H E + M D+I ++ + IGS
Sbjct: 169 AKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQIGSPT 222
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.1 bits (226), Expect = 3e-21
Identities = 45/197 (22%), Positives = 79/197 (40%), Gaps = 15/197 (7%)
Query: 69 SELIRL---FLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYF 125
S + L F ++DG R+ + Q+ Y
Sbjct: 55 STIASLITRFYDIDEGHILMDGHDLREYTLAS--LRNQVALVSQNVHLFNDTVANNIAYA 112
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+++ R+A + ++ N T IG + + LSGG+R+R++ A
Sbjct: 113 RTEEYSREQIEEAARMAYAMDFINKMD--NGLDTIIGENGVL----LSGGQRQRIAIARA 166
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245
LL D +L+ DE T+ LD+ S + + EL Q+ +T L H+ S I+ D+I++
Sbjct: 167 LLRDSPILILDEATSALDTESERAIQAALDEL--QKNRTSLVIAHRLS--TIEQADEIVV 222
Query: 246 LADSRTAFIGSKDAALA 262
+ D G+ LA
Sbjct: 223 VEDGIIVERGTHSELLA 239
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 86.2 bits (213), Expect = 1e-19
Identities = 34/188 (18%), Positives = 67/188 (35%), Gaps = 25/188 (13%)
Query: 86 DGDIRVNGKPVEGKF-----RSACGFMYQHDLFSPSLTVYEHLYF----------MALLK 130
+G + K + K +Q +TV E+L +L
Sbjct: 58 EGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFY 117
Query: 131 LDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDP 190
K + + +L L L + + G LSGG+ K + L+T+P
Sbjct: 118 KKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE--------LSGGQMKLVEIGRALMTNP 169
Query: 191 ALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250
+++ DEP G+ A + + EL + T L H+ +++ D + ++ + +
Sbjct: 170 KMIVMDEPIAGVAPGLAHDIFNHVLELK-AKGITFLIIEHRL-DIVLNYIDHLYVMFNGQ 227
Query: 251 TAFIGSKD 258
G +
Sbjct: 228 IIAEGRGE 235
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 84.6 bits (209), Expect = 5e-19
Identities = 36/179 (20%), Positives = 79/179 (44%), Gaps = 19/179 (10%)
Query: 87 GDIRVNGKPVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
G + V+G+ + K R G ++QH S TV+ ++ L +
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLEL---DNTPKDE 116
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ LL +GL + + + LSGG+++R++ A L ++P +LLCDE T
Sbjct: 117 VKRRVTELLSLVGLGDKHDSYPSN--------LSGGQKQRVAIARALASNPKVLLCDEAT 168
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD + ++ +++++ + T+L H+ + + D + ++++ +
Sbjct: 169 SALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVISNGELIEQDTVS 226
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 83.4 bits (206), Expect = 2e-18
Identities = 38/192 (19%), Positives = 76/192 (39%), Gaps = 28/192 (14%)
Query: 84 IIDGDIRVNGKPVEG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFM 126
+G I VNG+ + R+ ++QH +TV E++
Sbjct: 54 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 113
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
+ + + L ++G+ + LSGG+++R+S A L
Sbjct: 114 PIQV--LGLSKHDARERALKYLAKVGIDERAQGKYPVH-------LSGGQQQRVSIARAL 164
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+P +LL DEPT+ LD +++R+M++ ++ KT++ H+ + +I L
Sbjct: 165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQ-LAEEGKTMVVVTHEM-GFARHVSSHVIFL 222
Query: 247 ADSRTAFIGSKD 258
+ G +
Sbjct: 223 HQGKIEEEGDPE 234
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 82.7 bits (204), Expect = 2e-18
Identities = 41/192 (21%), Positives = 73/192 (38%), Gaps = 15/192 (7%)
Query: 69 SELIRLF--LSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFM 126
+ + L + II + KP R + + P LTVYE+L
Sbjct: 46 TTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMG 105
Query: 127 ALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATEL 186
A + D+ + + I SL L G+ LSGGE++ L+ L
Sbjct: 106 AYNRKDKE-GIKRDLEWIFSLF--PRLKERLKQLGGT--------LSGGEQQMLAIGRAL 154
Query: 187 LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
++ P LL+ DEP+ GL S++ +++++ +Q T+L + + +L
Sbjct: 155 MSRPKLLMMDEPSLGLAPILVSEVFEVIQKI-NQEGTTILLVEQNA-LGALKVAHYGYVL 212
Query: 247 ADSRTAFIGSKD 258
+ G
Sbjct: 213 ETGQIVLEGKAS 224
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 82.3 bits (203), Expect = 6e-18
Identities = 39/177 (22%), Positives = 65/177 (36%), Gaps = 20/177 (11%)
Query: 86 DGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
+G I+ +G+ F Q P T+ E++ F R + L
Sbjct: 90 EGIIKHSGR---------VSFCSQFSWIMPG-TIKENIIFGVSYDEYRYKSVVKACQLQQ 139
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+ +T +G +T LSGG+R R+S A + D L L D P LD F
Sbjct: 140 DIT---KFAEQDNTVLGEGGVT----LSGGQRARISLARAVYKDADLYLLDSPFGYLDVF 192
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
+ ++ KT + + E + DKI++L + F G+ +
Sbjct: 193 TEEQVFESCVCKL-MANKTRILVTSKM--EHLRKADKILILHQGSSYFYGTFSELQS 246
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 80.8 bits (199), Expect = 1e-17
Identities = 34/193 (17%), Positives = 81/193 (41%), Gaps = 19/193 (9%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG---KFRSACGFMYQHDLFSPSLTVYEHLYF 125
+ +R+ + + G + V GK V + R ++ + ++ E+L F
Sbjct: 42 TTTLRIISTLIKPSS---GIVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRF 98
Query: 126 MALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATE 185
+A + + ++ GL R+ + S G ++L A
Sbjct: 99 VAGF---YASSSSEIEEMVERATEIAGLGEKIKDRVST--------YSKGMVRKLLIARA 147
Query: 186 LLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245
L+ +P L + DEPT+GLD +A ++ +++++ + + ++ + + E+ + D+I L
Sbjct: 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM--LEVEFLCDRIAL 205
Query: 246 LADSRTAFIGSKD 258
+ + G+ +
Sbjct: 206 IHNGTIVETGTVE 218
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 79.9 bits (197), Expect = 2e-17
Identities = 35/198 (17%), Positives = 72/198 (36%), Gaps = 15/198 (7%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLY 124
S + L + + ++GKP+ + Q Y
Sbjct: 54 STVAALLQNLYQPTGG---QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAY 110
Query: 125 FMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFAT 184
+ + A + +S + GL T + + LSGG+R+ ++ A
Sbjct: 111 GLTQKPTMEEITAAAVKSGAHSFI--SGLPQGYDTEVDEAGSQ----LSGGQRQAVALAR 164
Query: 185 ELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKII 244
L+ P +L+ D+ T+ LD+ S ++ +++ E + ++VL S L++ D I+
Sbjct: 165 ALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS--LVEQADHIL 222
Query: 245 LLADSRTAFIGSKDAALA 262
L G+ +
Sbjct: 223 FLEGGAIREGGTHQQLME 240
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 80.0 bits (197), Expect = 2e-17
Identities = 36/179 (20%), Positives = 77/179 (43%), Gaps = 15/179 (8%)
Query: 88 DIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
+ ++G + R G + Q D + ++ +++ +V ++A
Sbjct: 59 QVLIDGHDLALADPNWLRRQVGVVLQ-DNVLLNRSIIDNISLANPGMSVEKVIYAAKLAG 117
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + EL + + LSGG+R+R++ A L+ +P +L+ DE T+ LD
Sbjct: 118 AHDFISELREGYNTIVGEQGAG------LSGGQRQRIAIARALVNNPKILIFDEATSALD 171
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAALA 262
S ++R M ++ + +TV+ H+ S + D+II++ + G L+
Sbjct: 172 YESEHVIMRNMHKI--CKGRTVIIIAHRLS--TVKNADRIIVMEKGKIVEQGKHKELLS 226
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 77.2 bits (190), Expect = 1e-16
Identities = 45/193 (23%), Positives = 82/193 (42%), Gaps = 21/193 (10%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G+I ++G+P++ +RS GF+ Q Y + D + +
Sbjct: 56 AGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDL 115
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTG 201
A S + + + +T +G + +SGG+R+RL+ A L +P +L+ DE T
Sbjct: 116 AFARSFVENM--PDQLNTEVGERGVK----ISGGQRQRLAIARAFLRNPKILMLDEATAS 169
Query: 202 LDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDAAL 261
LDS S S + + + L + +T L H+ S+ I DKI + + G + +
Sbjct: 170 LDSESESMVQKALDSL--MKGRTTLVIAHRLST--IVDADKIYFIEKGQITGSGKHNELV 225
Query: 262 A-------FLESQ 267
A ++ Q
Sbjct: 226 ATHPLYAKYVSEQ 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 75.7 bits (186), Expect = 2e-16
Identities = 30/178 (16%), Positives = 74/178 (41%), Gaps = 23/178 (12%)
Query: 69 SELIRLFLSQVIDDCIIDGDIRVNGKPVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMAL 128
+ L++ + + +I NG P+ K + F+ + + ++V ++L +A
Sbjct: 41 TTLLKTISTYLKPLKG---EIIYNGVPIT-KVKGKIFFLPEEIIVPRKISVEDYLKAVAS 96
Query: 129 LKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLT 188
L + K I L + +++ + ++G LS G +R+ A+ LL
Sbjct: 97 LYGVKVNKNE-----IMDALESVEVLDLKK-KLG--------ELSQGTIRRVQLASTLLV 142
Query: 189 DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246
+ + + D+P +D S K+++ + E+ ++ ++ + + + D L
Sbjct: 143 NAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE-----LSYCDVNENL 195
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 75.7 bits (186), Expect = 4e-16
Identities = 40/188 (21%), Positives = 67/188 (35%), Gaps = 29/188 (15%)
Query: 86 DGDIRVNGKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI 141
G I+ G+P+E K ++ Q + V+ +L K R
Sbjct: 52 KGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRT 103
Query: 142 ALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELL-------TDPALLL 194
L+N + L L + LSGGE +R+ A +L LLL
Sbjct: 104 ELLNDVAGALALDDKLGRSTNQ--------LSGGEWQRVRLAAVVLQITPQANPAGQLLL 155
Query: 195 CDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254
DEP LD S L +++ L Q+ ++ + H + + + LL +
Sbjct: 156 LDEPMNSLDVAQQSALDKILSALC-QQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLAS 213
Query: 255 GSKDAALA 262
G ++ L
Sbjct: 214 GRREEVLT 221
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 74.2 bits (182), Expect = 2e-15
Identities = 42/179 (23%), Positives = 80/179 (44%), Gaps = 14/179 (7%)
Query: 82 DCIIDGDIRVNGKPVEG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
+ I GD+ + K + G ++Q P L+V E++ F L ++ Q
Sbjct: 50 ETITSGDLFIGEKRMNDTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQ 109
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
R+ N + L L + + + LSGG+R+R++ L+ +P++ L DEP
Sbjct: 110 RV---NQVAEVLQLAHLLDRKPKA--------LSGGQRQRVAIGRTLVAEPSVFLLDEPL 158
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ ++ + L + +T++ H E + + DKI++L R A +G
Sbjct: 159 SNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVGKPL 216
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 67.3 bits (164), Expect = 4e-13
Identities = 39/179 (21%), Positives = 73/179 (40%), Gaps = 20/179 (11%)
Query: 88 DIRVNGKPVEGKFRSA--------CGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQ 139
I + K V + ++Q P +TVY+++ F L R+V +
Sbjct: 59 QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKL---RKVPRQE 115
Query: 140 RIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPT 199
+ + LGL + + LSGG+R+R++ ++ P + L DEP
Sbjct: 116 IDQRVREVAELLGLTELLNRKPRE--------LSGGQRQRVALGRAIVRKPQVFLMDEPL 167
Query: 200 TGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ ++ +++L Q T + H E + M D+I ++ +GS D
Sbjct: 168 SNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNRGVLQQVGSPD 225
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 58.6 bits (141), Expect = 3e-10
Identities = 36/180 (20%), Positives = 80/180 (44%), Gaps = 19/180 (10%)
Query: 86 DGDIRVNGKPVEGKFRSAC-------GFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAY 138
G++ + + V + G ++Q P+LT +E++ F + +
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIR 118
Query: 139 QRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEP 198
+R+ + L + + + LSG +++R++ A L+ DP+LLL DEP
Sbjct: 119 KRV---EEVAKILDIHHVLNHFPRE--------LSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 199 TTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ LD+ +++E+ S+ T+L H P +++ + D++ +L + +G +
Sbjct: 168 FSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKGKLVQVGKPE 226
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 58.5 bits (141), Expect = 3e-10
Identities = 44/173 (25%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 88 DIRVNGKPVEGKF--RSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALIN 145
I ++GK V + F+YQ+ P + V ++L F + +++K +R+
Sbjct: 56 RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRM---KKIKDPKRVL--- 109
Query: 146 SLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSF 205
+L + + + LSGGE++R++ A L+T+P +LL DEP + LD
Sbjct: 110 DTARDLKIEHLLDRNPLT--------LSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 206 SASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ M+ L + K TVL H +E M D+I ++ D + +G +
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQVGKPE 213
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 53.9 bits (129), Expect = 1e-08
Identities = 42/175 (24%), Positives = 77/175 (44%), Gaps = 16/175 (9%)
Query: 86 DGDIRVNGKPVE--GKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIAL 143
G++R+NG + R GF+ Q P L+VY ++ + R V+ +R
Sbjct: 52 RGEVRLNGADITPLPPERRGIGFVPQDYALFPHLSVYRNIAYG-----LRNVERVERDRR 106
Query: 144 INSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLD 203
+ + +LG+ + + LSGGER+R++ A L+ P LLL DEP + +D
Sbjct: 107 VREMAEKLGIAHLLDRKPAR--------LSGGERQRVALARALVIQPRLLLLDEPLSAVD 158
Query: 204 SFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKD 258
+ L+ +R + + +L H E + D++ ++ + R G
Sbjct: 159 LKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLK 212
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.7 bits (91), Expect = 8e-04
Identities = 9/65 (13%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDM 239
L FA + DE LD + ++ +R + + + + + +
Sbjct: 345 LLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQ-FIVISLKN--TMFEK 401
Query: 240 FDKII 244
D ++
Sbjct: 402 SDALV 406
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 622 | |||
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.73 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.48 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.21 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.76 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 98.12 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 97.35 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.92 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.68 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.18 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 95.02 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.49 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 93.5 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 93.34 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 93.34 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 92.98 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 92.98 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 92.96 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 92.81 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 92.63 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 92.58 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 92.49 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 92.48 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.37 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 92.03 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 91.88 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 91.79 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 91.64 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 91.48 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 91.47 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 91.41 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 91.38 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 91.27 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 91.27 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 91.17 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 90.89 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 90.81 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 90.7 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 90.68 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.61 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 90.41 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 90.4 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 90.4 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 90.39 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.36 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.17 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 90.09 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 90.06 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 89.48 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 89.45 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 89.39 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 89.2 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 89.07 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 88.28 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 88.22 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 88.22 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 88.21 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 88.09 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 88.05 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 88.01 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 87.96 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 87.78 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 87.51 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 87.14 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 86.93 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 86.6 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 85.86 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 85.75 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 85.5 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 85.48 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 85.46 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 85.39 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 85.34 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 85.24 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 85.08 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 84.99 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 84.3 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 84.13 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 84.11 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 83.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 83.87 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 83.84 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 83.76 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 83.73 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 83.5 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 83.49 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 83.46 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 83.42 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.15 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 83.11 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 83.09 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 83.04 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 83.03 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 82.87 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.71 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 82.62 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 82.57 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 82.52 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 82.45 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 82.45 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 82.43 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 82.41 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 82.34 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 82.18 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 81.93 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 81.79 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 81.72 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 81.63 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 81.57 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 81.52 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.45 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 81.44 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 81.37 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 81.33 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 81.16 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 81.15 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 80.95 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 80.93 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 80.9 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 80.84 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 80.77 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 80.59 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 80.46 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 80.39 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.38 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 80.27 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 80.16 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 80.15 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 80.14 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 80.13 |
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=3.7e-55 Score=434.55 Aligned_cols=221 Identities=20% Similarity=0.285 Sum_probs=202.0
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+|..|+.++|++||+++ ++|+.+.++|+| |||||||+++|+|+.+| .+|+|.++|+++
T Consensus 3 ~i~v~nlsk~y~~g~~~aL~~vsl~i-----~~Ge~~~iiG~s-----GsGKSTll~~i~gl~~p---~~G~I~~~g~~i 69 (242)
T d1oxxk2 3 RIIVKNVSKVFKKGKVVALDNVNINI-----ENGERFGILGPS-----GAGKTTFMRIIAGLDVP---STGELYFDDRLV 69 (242)
T ss_dssp CEEEEEEEEEEGGGTEEEEEEEEEEE-----CTTCEEEEECSC-----HHHHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred EEEEEeEEEEECCCCEEEEeceEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHHcCcCC---CCceEEECCEEe
Confidence 46889999999878899999999999 677788888776 89999999999999999 599999999998
Q ss_pred Cc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCc
Q psy2519 97 EG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQK 169 (622)
Q Consensus 97 ~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~ 169 (622)
.. ..|+++|||||++.++|++||+||+.|+++.+. .++++.+++++++++.+||++.+|+++++
T Consensus 70 ~~~~~~~~~~~rr~ig~vfQ~~~L~p~ltv~eni~~~l~~~~---~~~~~~~~~v~~~l~~~gL~~~~~~~p~~------ 140 (242)
T d1oxxk2 70 ASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMK---MSKEEIRKRVEEVAKILDIHHVLNHFPRE------ 140 (242)
T ss_dssp EETTEESSCGGGSCEEEEETTSCCCTTSCHHHHHHGGGTTSS---CCHHHHHHHHHHHHHHTTCGGGTTSCGGG------
T ss_pred ecCchhhcchhhccceEEeccccccccccHHHHhhhhhHhhc---CCHHHHHHHHHHHHhhcChHhhhhCChhh------
Confidence 53 246789999999999999999999999876543 56677888999999999999999999766
Q ss_pred cccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCC
Q psy2519 170 VVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADS 249 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G 249 (622)
|||||||||+|||||+++|++|||||||+||||.++.++++.|++++++.|+|||++|||+ +++.++|||+++|++|
T Consensus 141 --LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~-~~~~~~~dri~vm~~G 217 (242)
T d1oxxk2 141 --LSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDP-ADIFAIADRVGVLVKG 217 (242)
T ss_dssp --SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCH-HHHHHHCSEEEEEETT
T ss_pred --CCHHHHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCH-HHHHHhCCEEEEEECC
Confidence 9999999999999999999999999999999999999999999999876799999999996 7899999999999999
Q ss_pred ceEEecChHHHHH
Q psy2519 250 RTAFIGSKDAALA 262 (622)
Q Consensus 250 ~iv~~G~~~~~~~ 262 (622)
++++.|+++++.+
T Consensus 218 ~iv~~g~~~el~~ 230 (242)
T d1oxxk2 218 KLVQVGKPEDLYD 230 (242)
T ss_dssp EEEEEECHHHHHH
T ss_pred EEEEEcCHHHHHh
Confidence 9999999998863
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.3e-55 Score=433.72 Aligned_cols=218 Identities=21% Similarity=0.258 Sum_probs=194.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+.++|++|||++ .+|+.+.++|+| |||||||+|+|+|+.+| ++|+|.++|+++
T Consensus 6 ~I~v~nlsk~y--g~~~al~~vsl~v-----~~Ge~~~liGps-----GaGKSTLl~~i~Gl~~p---~sG~I~i~g~~i 70 (239)
T d1v43a3 6 EVKLENLTKRF--GNFTAVNKLNLTI-----KDGEFLVLLGPS-----GCGKTTTLRMIAGLEEP---TEGRIYFGDRDV 70 (239)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEE--CCEEEEcceeEEE-----CCCCEEEEECCC-----CChHHHHHHHHHcCCCC---CCCEEEEcceec
Confidence 36899999996 8999999999999 678888888776 89999999999999999 599999999999
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+. ..+++||||||++.++|++||+||+.|+.+.+. .++++.+++++++++.+||++.+|+++.+ |||
T Consensus 71 ~~~~~~~r~ig~v~Q~~~l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------LSG 139 (239)
T d1v43a3 71 TYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEELLNRYPAQ--------LSG 139 (239)
T ss_dssp TTSCGGGGTEEEEEC------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGGTTSCTTT--------CCS
T ss_pred ccCCcccceEEEEeechhhcccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhhhcCChhh--------CCH
Confidence 75 457789999999999999999999999876653 46777888999999999999999999666 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|++|+|||||+||||.++.+++++|++++++.|+|||+||||+ +++.++||||++|++|++++.
T Consensus 140 Gq~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~ 218 (239)
T d1v43a3 140 GQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQ-VEAMTMGDRIAVMNRGQLLQI 218 (239)
T ss_dssp SCHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999886799999999996 789999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|+++++.
T Consensus 219 G~~~el~ 225 (239)
T d1v43a3 219 GSPTEVY 225 (239)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999885
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4e-55 Score=432.51 Aligned_cols=218 Identities=23% Similarity=0.305 Sum_probs=163.2
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+|+| |+.++|+++||++ .+|+.+.++|+| |||||||||+|+|+.+| .+|+|.++|+++.
T Consensus 1 Iev~nv~k~y--g~~~~l~~isl~i-----~~Gei~~liGps-----GsGKSTLl~~i~Gl~~p---~sG~I~i~g~~i~ 65 (232)
T d2awna2 1 VQLQNVTKAW--GEVVVSKDINLDI-----HEGEFVVFVGPS-----GCGKSTLLRMIAGLETI---TSGDLFIGEKRMN 65 (232)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEESSSCCT
T ss_pred CEEEEEEEEE--CCEEEEeeeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCCEEEECCEECC
Confidence 4789999996 8999999999999 677888888776 89999999999999999 5999999999987
Q ss_pred c--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChH
Q psy2519 98 G--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGG 175 (622)
Q Consensus 98 ~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgG 175 (622)
. ..++.||||||++.++|.+||+||+.|+...+. .++++.+++++++++.++|.+..|+++.+ ||||
T Consensus 66 ~~~~~~r~ig~v~Q~~~l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~~~~~~~~--------LSGG 134 (232)
T d2awna2 66 DTPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHLLDRKPKA--------LSGG 134 (232)
T ss_dssp TSCGGGTCEEEECSSCCC------------------------CHHHHHHHHHHHHC------------------------
T ss_pred CCchhhceeeeeccccccccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhhhhCChhh--------CCHH
Confidence 5 357889999999999999999999999977653 34556778899999999999999999776 9999
Q ss_pred HHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEec
Q psy2519 176 ERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIG 255 (622)
Q Consensus 176 qrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G 255 (622)
|||||+|||||+++|++|||||||+||||.++.++++.|+++.++.|+|||++|||+ +++.++|||+++|++|++++.|
T Consensus 135 qkQRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a~~~~dri~vm~~G~iv~~G 213 (232)
T d2awna2 135 QRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQ-VEAMTLADKIVVLDAGRVAQVG 213 (232)
T ss_dssp -----CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCH-HHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999999999999999887899999999996 7899999999999999999999
Q ss_pred ChHHHHH
Q psy2519 256 SKDAALA 262 (622)
Q Consensus 256 ~~~~~~~ 262 (622)
+++++++
T Consensus 214 ~~~el~~ 220 (232)
T d2awna2 214 KPLELYH 220 (232)
T ss_dssp CHHHHHH
T ss_pred CHHHHHh
Confidence 9998863
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=3.7e-54 Score=427.67 Aligned_cols=218 Identities=21% Similarity=0.283 Sum_probs=200.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+.++++++||++ ++|+.+.++|+| |||||||+|+|+|+.+| ++|+|.++|+++
T Consensus 3 ~i~v~nl~k~y--g~~~al~~vsl~i-----~~Ge~~~liG~s-----GaGKSTll~~i~gl~~p---~sG~I~~~g~~i 67 (240)
T d1g2912 3 GVRLVDVWKVF--GEVTAVREMSLEV-----KDGEFMILLGPS-----GCGKTTTLRMIAGLEEP---SRGQIYIGDKLV 67 (240)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHHTSSCC---SEEEEEETTEEE
T ss_pred cEEEEeEEEEE--CCEEEEcceeeEE-----cCCCEEEEECCC-----CChHHHHHHHHhcCCCC---CCCEEEECCEEe
Confidence 36899999996 8999999999999 678888888776 89999999999999999 599999999998
Q ss_pred Cc--------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCC
Q psy2519 97 EG--------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQ 168 (622)
Q Consensus 97 ~~--------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~ 168 (622)
.. ..|+.+|||||++.++|++||+||+.++.+.+. .++++.+++++++++.++|++.+|+++.+
T Consensus 68 ~~~~~~~~~~~~~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~~~~~p~~----- 139 (240)
T d1g2912 68 ADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTELLNRKPRE----- 139 (240)
T ss_dssp EEGGGTEECCGGGSSEEEECSCCCCCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGGTTCCGGG-----
T ss_pred cccchhhhcccccccceecccchhhcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhHhcCChhh-----
Confidence 53 136789999999999999999999999988764 46677888999999999999999999766
Q ss_pred ccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 169 KVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 169 ~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++.|+|||++|||+ +++.++||||++|++
T Consensus 140 ---LSGGqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~-~~~~~~~drv~vm~~ 215 (240)
T d1g2912 140 ---LSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQ-VEAMTMGDRIAVMNR 215 (240)
T ss_dssp ---SCHHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCH-HHHHHHCSEEEEEET
T ss_pred ---CCHHHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEEC
Confidence 9999999999999999999999999999999999999999999999886799999999996 789999999999999
Q ss_pred CceEEecChHHHH
Q psy2519 249 SRTAFIGSKDAAL 261 (622)
Q Consensus 249 G~iv~~G~~~~~~ 261 (622)
|++++.|+++|++
T Consensus 216 G~iv~~G~~~el~ 228 (240)
T d1g2912 216 GVLQQVGSPDEVY 228 (240)
T ss_dssp TEEEEEECHHHHH
T ss_pred CEEEEEcCHHHHH
Confidence 9999999999886
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.2e-54 Score=427.28 Aligned_cols=220 Identities=21% Similarity=0.303 Sum_probs=199.3
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+|+|..+. .++|++||+++ ++|+.+.++|+| |||||||+++|+|+.+| ++|+|.++|+
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i-----~~Ge~~~iiG~s-----GsGKSTLl~~i~Gl~~p---~sG~I~~~g~ 67 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHV-----PAGQIYGVIGAS-----GAGKSTLIRCVNLLERP---TEGSVLVDGQ 67 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEE-----CSSCEEEEEEST-----TSSHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEE-----cCCCEEEEECCC-----CCCHHHHHHHHcCCccc---cCCceEEcCe
Confidence 468999999996554 46899999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc-------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 95 PVEG-------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 95 ~~~~-------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
++.. .+|+.+|||||++.++|.+||+||+.++.+++. .++++.+++++++++.+||.+.+|+++.+
T Consensus 68 ~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv~eni~~~l~~~~---~~~~~~~~~v~~~L~~vgL~~~~~~~~~~---- 140 (240)
T d3dhwc1 68 ELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDN---TPKDEVKRRVTELLSLVGLGDKHDSYPSN---- 140 (240)
T ss_dssp EECTTCHHHHHHHHHHEEECCSSCCCCTTSBHHHHHHHHHHTTT---CCTTHHHHHHHHHHHHHSTTTTTSSCBSC----
T ss_pred EeeeCChhhhhhhhccccccccccccCCCccHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCCchhhhCChhh----
Confidence 9853 256789999999999999999999999987653 34566778899999999999999999766
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
|||||||||+|||||+.+|++|||||||+|||+.++.++++.|++++++.|+|||++|||+ +++.++|||+++|+
T Consensus 141 ----LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl-~~~~~~~dri~vl~ 215 (240)
T d3dhwc1 141 ----LSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEM-DVVKRICDCVAVIS 215 (240)
T ss_dssp ----CCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCH-HHHHHHCSEEEEEE
T ss_pred ----CCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCH-HHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999986799999999996 78999999999999
Q ss_pred CCceEEecChHHHH
Q psy2519 248 DSRTAFIGSKDAAL 261 (622)
Q Consensus 248 ~G~iv~~G~~~~~~ 261 (622)
+|++++.|++++++
T Consensus 216 ~G~iv~~G~~~ei~ 229 (240)
T d3dhwc1 216 NGELIEQDTVSEVF 229 (240)
T ss_dssp TTEEEEEEETTTTT
T ss_pred CCEEEEECCHHHHH
Confidence 99999999999864
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=8.3e-54 Score=421.85 Aligned_cols=214 Identities=25% Similarity=0.294 Sum_probs=194.5
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+| |+ .+|+++||++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 1 mi~v~nlsk~y--~~-~aL~~vs~~i-----~~Ge~~~liGps-----GaGKSTll~~l~Gl~~p---~sG~I~~~G~~i 64 (229)
T d3d31a2 1 MIEIESLSRKW--KN-FSLDNLSLKV-----ESGEYFVILGPT-----GAGKTLFLELIAGFHVP---DSGRILLDGKDV 64 (229)
T ss_dssp CEEEEEEEEEC--SS-CEEEEEEEEE-----CTTCEEEEECCC-----THHHHHHHHHHHTSSCC---SEEEEEETTEEC
T ss_pred CEEEEEEEEEe--CC-EEEeeeEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhcCcCC---CCCEEEEccEec
Confidence 46899999997 55 4899999999 678888888776 89999999999999999 599999999999
Q ss_pred Cc--cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 97 EG--KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 97 ~~--~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
.. ..++.+|||||++.++|++||+||+.|+..++.. + ..++++++++.++|.+.+|+++.+ |||
T Consensus 65 ~~~~~~~r~ig~v~Q~~~l~~~~tV~enl~~~~~~~~~---~---~~~~~~~~l~~~~l~~~~~~~~~~--------LSG 130 (229)
T d3d31a2 65 TDLSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKI---K---DPKRVLDTARDLKIEHLLDRNPLT--------LSG 130 (229)
T ss_dssp TTSCHHHHTCEEECTTCCCCTTSCHHHHHHHHHHHHCC---C---CHHHHHHHHHHTTCTTTTTSCGGG--------SCH
T ss_pred cccchhHhcceeeccccccCccccHHHHHHHHHhhccc---c---HHHHHHHHHHHhcchhhHhCChhh--------CCH
Confidence 76 3567899999999999999999999999877542 2 134688999999999999999777 999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+++|++|||||||+||||.++.++.+.|++++++.|.|||++|||+ +++.++||||++|++|++++.
T Consensus 131 G~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~-~~~~~~~drv~vm~~G~iv~~ 209 (229)
T d3d31a2 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQ-TEARIMADRIAVVMDGKLIQV 209 (229)
T ss_dssp HHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCH-HHHHHHCSEEEEESSSCEEEE
T ss_pred HHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCH-HHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999887899999999996 789999999999999999999
Q ss_pred cChHHHH
Q psy2519 255 GSKDAAL 261 (622)
Q Consensus 255 G~~~~~~ 261 (622)
|++++++
T Consensus 210 g~~~el~ 216 (229)
T d3d31a2 210 GKPEEIF 216 (229)
T ss_dssp ECHHHHH
T ss_pred cCHHHHH
Confidence 9999886
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1e-52 Score=415.14 Aligned_cols=218 Identities=21% Similarity=0.293 Sum_probs=193.5
Q ss_pred CcccCCccccccccc--eeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 17 NEEVPNVDFSEIVGS--VQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~--~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
+++++||+|+|..++ ..+|+++||++ .+|+.+.++|+| ||||||||++|+|+.+| .+|+|.++|+
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i-----~~Ge~~~iiG~s-----GsGKSTLl~~i~gl~~p---~sG~I~~~g~ 67 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNI-----KEGEFVSIMGPS-----GSGKSTMLNIIGCLDKP---TEGEVYIDNI 67 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTE
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEE-----cCCCEEEEECCC-----CCCcchhhHhccCCCCC---CcceeEECCE
Confidence 468999999997665 45799999999 678888888776 89999999999999999 5999999999
Q ss_pred ecCc----c----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCc-ccCCccCCcC
Q psy2519 95 PVEG----K----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMN-SQHTRIGSSS 165 (622)
Q Consensus 95 ~~~~----~----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~-~~~~~v~~~~ 165 (622)
++.. + .|+.||||||++.++|.+||+||+.++...+.....+.+++.+++.++++.++|.+ .+++++.+
T Consensus 68 ~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~-- 145 (230)
T d1l2ta_ 68 KTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQ-- 145 (230)
T ss_dssp ECTTCCHHHHHHHHHHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGG--
T ss_pred EcCcCChhhcchhhcceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhh--
Confidence 9864 1 24679999999999999999999999987765445567778889999999999976 47888655
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
|||||||||+|||||+++|++|||||||+|||+.++.+++++|++++++.|+|||++|||+ +++ ++||||++
T Consensus 146 ------LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~-~~a-~~~drv~~ 217 (230)
T d1l2ta_ 146 ------LSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDI-NVA-RFGERIIY 217 (230)
T ss_dssp ------SCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCH-HHH-TTSSEEEE
T ss_pred ------CCHHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCH-HHH-HhCCEEEE
Confidence 9999999999999999999999999999999999999999999999987799999999996 454 89999999
Q ss_pred ecCCceEEecCh
Q psy2519 246 LADSRTAFIGSK 257 (622)
Q Consensus 246 L~~G~iv~~G~~ 257 (622)
|++|+|+++|++
T Consensus 218 m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 218 LKDGEVEREEKL 229 (230)
T ss_dssp EETTEEEEEEEC
T ss_pred EECCEEEEeccC
Confidence 999999999864
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.4e-51 Score=412.34 Aligned_cols=219 Identities=23% Similarity=0.285 Sum_probs=196.1
Q ss_pred CCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEe
Q psy2519 16 NNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKP 95 (622)
Q Consensus 16 ~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~ 95 (622)
+.++|+||+|+| |+.++|++|||++ .+|+.+.++|+| |||||||+++|+|+.+| ++|+|.++|++
T Consensus 1 n~Lev~nl~k~y--g~~~al~~vs~~i-----~~GEi~~iiG~s-----GsGKSTLl~~i~Gl~~p---~~G~I~~~G~~ 65 (258)
T d1b0ua_ 1 NKLHVIDLHKRY--GGHEVLKGVSLQA-----RAGDVISIIGSS-----GSGKSTFLRCINFLEKP---SEGAIIVNGQN 65 (258)
T ss_dssp CCEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEE
T ss_pred CeEEEEEEEEEE--CCEEEEcceeeEE-----cCCCEEEEECCC-----CCcHHHHHHHHHcCccC---CCCCEEECCEE
Confidence 468999999996 8999999999999 778888888776 89999999999999999 59999999999
Q ss_pred cCc-----------------cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcc-c
Q psy2519 96 VEG-----------------KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNS-Q 157 (622)
Q Consensus 96 ~~~-----------------~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~-~ 157 (622)
+.. ..|+++|||||++.++|.+||.||+.++..... ..++.+.++++.++++.++|.+. .
T Consensus 66 i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~ 143 (258)
T d1b0ua_ 66 INLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL--GLSKHDARERALKYLAKVGIDERAQ 143 (258)
T ss_dssp CCEEECTTSSEEESCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHTTCCHHHH
T ss_pred eccCCccchhcccccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhc--CCCHHHHHHHHHHHHHHcCCchhhh
Confidence 852 246789999999999999999999999754332 23566778889999999999774 4
Q ss_pred CCccCCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHH
Q psy2519 158 HTRIGSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELI 237 (622)
Q Consensus 158 ~~~v~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~ 237 (622)
++++++ |||||||||+|||||+.+|++|||||||+|||+.++.+++++|+++++ +|+|||++|||+ +++.
T Consensus 144 ~~~p~~--------LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~-~g~til~vtHdl-~~~~ 213 (258)
T d1b0ua_ 144 GKYPVH--------LSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAE-EGKTMVVVTHEM-GFAR 213 (258)
T ss_dssp TSCGGG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHH-TTCCEEEECSCH-HHHH
T ss_pred ccCccc--------ccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcc-cCCceEEEeCCH-HHHH
Confidence 667555 999999999999999999999999999999999999999999999987 699999999996 7899
Q ss_pred hhccceeeecCCceEEecChHHHH
Q psy2519 238 DMFDKIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 238 ~~~D~v~~L~~G~iv~~G~~~~~~ 261 (622)
++||||++|++|++++.|++++++
T Consensus 214 ~~adri~vm~~G~iv~~g~~~ev~ 237 (258)
T d1b0ua_ 214 HVSSHVIFLHQGKIEEEGDPEQVF 237 (258)
T ss_dssp HHCSEEEEEETTEEEEEECHHHHH
T ss_pred HhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999886
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=1.3e-50 Score=403.74 Aligned_cols=232 Identities=18% Similarity=0.225 Sum_probs=207.4
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |++++|+++|+++ .+|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 2 aI~v~nl~k~y--g~~~vl~~vs~~v-----~~Gei~glvG~n-----GaGKSTLl~~l~G~~~p---~~G~i~i~G~~i 66 (238)
T d1vpla_ 2 AVVVKDLRKRI--GKKEILKGISFEI-----EEGEIFGLIGPN-----GAGKTTTLRIISTLIKP---SSGIVTVFGKNV 66 (238)
T ss_dssp CEEEEEEEEEE--TTEEEEEEEEEEE-----CTTCEEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEET
T ss_pred CEEEEeEEEEE--CCEEEEccceeEE-----cCCCEEEEECCC-----CCCHHHHHHHHhcCCCC---CCCEEEECcEec
Confidence 46899999986 9999999999999 678888888887 89999999999999999 599999999998
Q ss_pred Cc---cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 97 EG---KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 97 ~~---~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
.+ ..|+.+|||||++.+++.+||.||+.|...++. .++.+..++++++++.++|.+..++++++ ||
T Consensus 67 ~~~~~~~~~~i~~vpq~~~~~~~ltv~e~l~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~~~~~~~~--------lS 135 (238)
T d1vpla_ 67 VEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYA---SSSSEIEEMVERATEIAGLGEKIKDRVST--------YS 135 (238)
T ss_dssp TTCHHHHHTTEEEECTTCCCCTTSBHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHCCGGGGGSBGGG--------CC
T ss_pred ccChHHHHhhEeEeeeccccCCCccHHHHHHHHHHhcC---CCHHHHHHHHHHHHHhCCCHHHHhhhhhh--------CC
Confidence 65 468899999999999999999999999887764 34566677899999999999999999887 99
Q ss_pred hHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEE
Q psy2519 174 GGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAF 253 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~ 253 (622)
||||||++|||||+++|++|||||||+||||.++.++.++|+++++ +|+|||++||++ +++..+||||++|++|++++
T Consensus 136 gG~~qrv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~-~g~tii~~tH~l-~~~~~~~drv~vl~~G~iv~ 213 (238)
T d1vpla_ 136 KGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQ-EGLTILVSSHNM-LEVEFLCDRIALIHNGTIVE 213 (238)
T ss_dssp HHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEEECCH-HHHTTTCSEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHh-cCCEEEEEeCCH-HHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999987 699999999996 79999999999999999999
Q ss_pred ecChHHHHHHHHhCCCCCCCCCChHHHHHHh
Q psy2519 254 IGSKDAALAFLESQGYPCPYGYNPADFLIKS 284 (622)
Q Consensus 254 ~G~~~~~~~~~~~~g~~~p~~~n~~d~~~~~ 284 (622)
.|+++++.+.+ ...+..+.|.++
T Consensus 214 ~g~~~el~~~~--------~~~~~~~~f~~~ 236 (238)
T d1vpla_ 214 TGTVEELKERY--------KAQNIEEVFEEV 236 (238)
T ss_dssp EEEHHHHHHHT--------TCSSHHHHHHHH
T ss_pred EcCHHHHHhcc--------CCchHHHHHHHh
Confidence 99999987533 234555655544
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=5.2e-51 Score=403.66 Aligned_cols=208 Identities=23% Similarity=0.349 Sum_probs=184.8
Q ss_pred CccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecCc--c
Q psy2519 22 NVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVEG--K 99 (622)
Q Consensus 22 ~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~~--~ 99 (622)
++.+. +|+..+ ++|+++ .++.++++|+| |||||||+|+|+|+++| .+|+|.++|+++.+ .
T Consensus 6 ~~~k~--~g~~~~--~vs~~~------~~e~~~liGpn-----GaGKSTll~~i~Gl~~p---~~G~I~~~G~~i~~~~~ 67 (240)
T d2onka1 6 RAEKR--LGNFRL--NVDFEM------GRDYCVLLGPT-----GAGKSVFLELIAGIVKP---DRGEVRLNGADITPLPP 67 (240)
T ss_dssp EEEEE--ETTEEE--EEEEEE------CSSEEEEECCT-----TSSHHHHHHHHHTSSCC---SEEEEEETTEECTTSCT
T ss_pred EEEEE--ECCEEE--EEEEEe------CCEEEEEECCC-----CChHHHHHHHHHcCCCC---CceEEEECCEECCcCCH
Confidence 34555 577654 677776 24677777776 89999999999999999 59999999999976 4
Q ss_pred ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHHHHH
Q psy2519 100 FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGERKR 179 (622)
Q Consensus 100 ~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGqrqR 179 (622)
.++.||||||++.++|++||+||+.|+.+ ..++.+++++++++++.+||.+.+++++.+ ||||||||
T Consensus 68 ~~r~ig~v~Q~~~l~~~ltV~enl~~~l~-----~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~--------LSGG~kQR 134 (240)
T d2onka1 68 ERRGIGFVPQDYALFPHLSVYRNIAYGLR-----NVERVERDRRVREMAEKLGIAHLLDRKPAR--------LSGGERQR 134 (240)
T ss_dssp TTSCCBCCCSSCCCCTTSCHHHHHHTTCT-----TSCHHHHHHHHHHHHHTTTCTTTTTCCGGG--------SCHHHHHH
T ss_pred HHcCceeeccchhhcccchhhHhhhhhhc-----ccCHHHHHHHHHHHHHhcCcHhhhhCChhh--------CCHHHHHH
Confidence 67889999999999999999999999743 234566778899999999999999999766 99999999
Q ss_pred HHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEecChHH
Q psy2519 180 LSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFIGSKDA 259 (622)
Q Consensus 180 vsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~G~~~~ 259 (622)
|+|||||+++|++|||||||+|||+.++.++++.|++++++.|+|||++|||+ +++.++|||+++|++|++++.|++++
T Consensus 135 vaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~-~~~~~~adri~vm~~G~ii~~G~~~e 213 (240)
T d2onka1 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL-IEAAMLADEVAVMLNGRIVEKGKLKE 213 (240)
T ss_dssp HHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCH-HHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCH-HHHHHhCCEEEEEECCEEEEEecHHH
Confidence 99999999999999999999999999999999999999886799999999996 78999999999999999999999998
Q ss_pred HH
Q psy2519 260 AL 261 (622)
Q Consensus 260 ~~ 261 (622)
+.
T Consensus 214 l~ 215 (240)
T d2onka1 214 LF 215 (240)
T ss_dssp HH
T ss_pred Hh
Confidence 86
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.9e-50 Score=403.17 Aligned_cols=216 Identities=21% Similarity=0.280 Sum_probs=191.7
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+|+| |+.++|++|||++ ++|+.+.++|+| |||||||+|+|+|+++| .+|+|.++|+++
T Consensus 6 ~Lev~~l~k~y--g~~~al~~vs~~i-----~~Gei~~liGpn-----GaGKSTl~~~i~Gl~~p---~~G~I~~~G~~i 70 (240)
T d1ji0a_ 6 VLEVQSLHVYY--GAIHAIKGIDLKV-----PRGQIVTLIGAN-----GAGKTTTLSAIAGLVRA---QKGKIIFNGQDI 70 (240)
T ss_dssp EEEEEEEEEEE--TTEEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred EEEEeeEEEEE--CCEEEEeeeeEEE-----CCCCEEEEECCC-----CCcHHHHHHHHhCCCCC---CccEEEeccccc
Confidence 56899999996 8999999999999 678888888887 89999999999999999 599999999998
Q ss_pred Ccc-----ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHh-CCCcccCCccCCcCCCCcc
Q psy2519 97 EGK-----FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIEL-GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 97 ~~~-----~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~ 170 (622)
... .|..++|+||+..++|.+||+||+.++...... +...++.++++++.+ +|.+..++++++
T Consensus 71 ~~~~~~~~~r~gi~~~~q~~~l~~~ltv~en~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~------- 139 (240)
T d1ji0a_ 71 TNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKD----KEGIKRDLEWIFSLFPRLKERLKQLGGT------- 139 (240)
T ss_dssp TTCCHHHHHHTTEEEECSSCCCCTTSBHHHHHHGGGTTCCC----SSHHHHHHHHHHHHCHHHHTTTTSBSSS-------
T ss_pred ccccHHHHHHhcccccCcccccCCcccHHHHHHHHHHhcCC----HHHHHHHHHHHHHHhhChHHHHhCchhh-------
Confidence 651 355699999999999999999999887654432 223344566777776 688888998777
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
|||||||||+|||||+++|++|||||||+||||.++.+++++|+++++ +|+|||++||++ +++.++||||++|++|+
T Consensus 140 -LSGG~~Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~~tH~l-~~~~~~~drv~vl~~G~ 216 (240)
T d1ji0a_ 140 -LSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQ-EGTTILLVEQNA-LGALKVAHYGYVLETGQ 216 (240)
T ss_dssp -SCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCCEEEEESCH-HHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHhCCEEEEEECCE
Confidence 999999999999999999999999999999999999999999999987 699999999996 78999999999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
++++|+++++.
T Consensus 217 iv~~g~~~el~ 227 (240)
T d1ji0a_ 217 IVLEGKASELL 227 (240)
T ss_dssp EEEEEEHHHHH
T ss_pred EEEEcCHHHHh
Confidence 99999999875
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.9e-50 Score=403.97 Aligned_cols=220 Identities=19% Similarity=0.231 Sum_probs=194.9
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| |+.++|++||+++ ++|+.+.++|+| |||||||+|+|+|+.+| .+|+|.++|+++
T Consensus 4 iL~v~nlsk~y--g~~~aL~~vs~~v-----~~Gei~~liG~n-----GaGKSTLl~~i~Gl~~p---~~G~I~~~g~~i 68 (254)
T d1g6ha_ 4 ILRTENIVKYF--GEFKALDGVSISV-----NKGDVTLIIGPN-----GSGKSTLINVITGFLKA---DEGRVYFENKDI 68 (254)
T ss_dssp EEEEEEEEEEE--TTEEEEEEECCEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEC
T ss_pred eEEEEEEEEEE--CCeEEEcceEEEE-----CCCCEEEEECCC-----CCcHHHHHHHHHCCCcC---CCcEEEECCEec
Confidence 47899999986 8999999999999 678888888887 89999999999999999 599999999998
Q ss_pred Cc----c-ccccEEEEecCCCCCCCCCHHHHHHHHHHcCCC----------ccccHHHHHHHHHHHHHHhCCCcccCCcc
Q psy2519 97 EG----K-FRSACGFMYQHDLFSPSLTVYEHLYFMALLKLD----------RRVKAYQRIALINSLLIELGLMNSQHTRI 161 (622)
Q Consensus 97 ~~----~-~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~----------~~~~~~~~~~~v~~~l~~lgL~~~~~~~v 161 (622)
+. + .++.++||||++.+++.+||+||+.++...+.. ....+++..+++.++++.+++.+..|+++
T Consensus 69 ~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 69 TNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp TTCCHHHHHHHTEEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBG
T ss_pred cchhHHHHHHhcCCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCch
Confidence 65 2 455699999999999999999999886433211 11123445678889999999999999998
Q ss_pred CCcCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhcc
Q psy2519 162 GSSSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFD 241 (622)
Q Consensus 162 ~~~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D 241 (622)
++ |||||||||+|||||+.+|++|||||||+|||+.++.++++.|+++++ +|+|||++|||+ +++.++||
T Consensus 149 ~~--------LSgG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~-~g~til~vsHdl-~~~~~~~D 218 (254)
T d1g6ha_ 149 GE--------LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKA-KGITFLIIEHRL-DIVLNYID 218 (254)
T ss_dssp GG--------SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCC-STTGGGCS
T ss_pred hh--------CCcHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHH-CCCEEEEEeCcH-HHHHHhCC
Confidence 87 999999999999999999999999999999999999999999999987 699999999997 68999999
Q ss_pred ceeeecCCceEEecChHHHH
Q psy2519 242 KIILLADSRTAFIGSKDAAL 261 (622)
Q Consensus 242 ~v~~L~~G~iv~~G~~~~~~ 261 (622)
||++|++|+++++|+++|+.
T Consensus 219 rv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 219 HLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp EEEEEETTEEEEEEESHHHH
T ss_pred EEEEEeCCEEEEEecHHHHh
Confidence 99999999999999998765
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.2e-47 Score=385.33 Aligned_cols=227 Identities=19% Similarity=0.242 Sum_probs=182.6
Q ss_pred ecCCcccCCccccccc-cceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 14 FKNNEEVPNVDFSEIV-GSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 14 ~~~~~~~~~~~~~~~~-g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
..+.++++||+|+|+. .+.++|+++|+++ ++|+.++++|+| |||||||+++|+|+.+| .+|+|.+|
T Consensus 8 ~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i-----~~Ge~vaivG~s-----GsGKSTLl~li~gl~~p---~~G~I~i~ 74 (251)
T d1jj7a_ 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTL-----RPGEVTALVGPN-----GSGKSTVAALLQNLYQP---TGGQLLLD 74 (251)
T ss_dssp CCCCEEEEEEEECCTTSTTCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEET
T ss_pred ccceEEEEEEEEECCCCCCCEeEeceEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhcccCC---CcCEEEEC
Confidence 3567999999999853 2457999999999 788888888876 89999999999999999 59999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCc-cccHHHHHHHHHHHHHHhCCCcccCCccCCcCCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDR-RVKAYQRIALINSLLIELGLMNSQHTRIGSSSIT 167 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~-~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~ 167 (622)
|+++.. .+|+.++||+|++.+++ .||+||+.++....... ............+.++ +|.+..++.++.. |.
T Consensus 75 g~~i~~~~~~~~r~~i~~v~Q~~~lf~-~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~--~l~~g~~~~i~~~-~~ 150 (251)
T d1jj7a_ 75 GKPLPQYEHRYLHRQVAAVGQEPQVFG-RSLQENIAYGLTQKPTMEEITAAAVKSGAHSFIS--GLPQGYDTEVDEA-GS 150 (251)
T ss_dssp TEEGGGBCHHHHHHHEEEECSSCCCCS-SBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHH--TSTTGGGCBCCSS-CS
T ss_pred CEecchhhhHHHHHHhhhccccccccC-cchhhhhhhhhcccchHHHHHHHHHHHHHHHHHH--hccccchhhHhcc-Cc
Confidence 999865 37889999999999886 59999999874322110 0001111112223343 3444455555541 33
Q ss_pred CccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeec
Q psy2519 168 QKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLA 247 (622)
Q Consensus 168 ~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~ 247 (622)
+ |||||||||+|||||+.+|++|+|||||++||+.+..++++.|+++.++.|+|+|++||++ +.+ +.||||++|+
T Consensus 151 ~---LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l-~~~-~~aDrI~vl~ 225 (251)
T d1jj7a_ 151 Q---LSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHL-SLV-EQADHILFLE 225 (251)
T ss_dssp S---SCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCH-HHH-HTCSEEEEEE
T ss_pred c---CChhHceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCH-HHH-HhCCEEEEEE
Confidence 3 9999999999999999999999999999999999999999999999876799999999996 444 6799999999
Q ss_pred CCceEEecChHHHHH
Q psy2519 248 DSRTAFIGSKDAALA 262 (622)
Q Consensus 248 ~G~iv~~G~~~~~~~ 262 (622)
+|+|++.|+++++++
T Consensus 226 ~G~iv~~Gt~~eLl~ 240 (251)
T d1jj7a_ 226 GGAIREGGTHQQLME 240 (251)
T ss_dssp TTEEEEEECHHHHHH
T ss_pred CCEEEEECCHHHHHh
Confidence 999999999998864
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-47 Score=381.13 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=177.7
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||+|+|+.++.++|+++||++ ++|+.++++|++ |||||||+++|+|+.+| .+|+|.+||+++.
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i-----~~Ge~vaIvG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~g~~i~ 68 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSI-----KQGEVIGIVGRS-----GSGKSTLTKLIQRFYIP---ENGQVLIDGHDLA 68 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEE-----ETTCEEEEECST-----TSSHHHHHHHHTTSSCC---SEEEEEETTEETT
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHhcCCC---CCCEEEECCEEec
Confidence 5789999999777788999999999 678888888776 89999999999999999 5999999999986
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHH--HHHHHHHHHh-CCCcccCCccCCcCCCCcc
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRI--ALINSLLIEL-GLMNSQHTRIGSSSITQKV 170 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~--~~v~~~l~~l-gL~~~~~~~v~~~~~~~~~ 170 (622)
. .+|+.+|||+|++.+++ .||+||+.++.... +.++.. .+...+.+.+ .+....++.++.. | .
T Consensus 69 ~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~~~~~~-----~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~-g---~ 138 (241)
T d2pmka1 69 LADPNWLRRQVGVVLQDNVLLN-RSIIDNISLANPGM-----SVEKVIYAAKLAGAHDFISELREGYNTIVGEQ-G---A 138 (241)
T ss_dssp TSCHHHHHHHEEEECSSCCCTT-SBHHHHHCTTSTTC-----CHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTT-T---T
T ss_pred ccchhhhhceEEEEecccccCC-ccccccccccCccc-----cHHHHHHHHHHHhhHHHHHhhhcchhhhcCCC-C---C
Confidence 5 47899999999998875 59999998863221 112111 1111222222 2234456666541 2 3
Q ss_pred ccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCc
Q psy2519 171 VLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSR 250 (622)
Q Consensus 171 gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~ 250 (622)
.|||||||||+|||||+.+|++||||||||+||+.+..++++.|+++.+ |+|+|++||++ +.+ +.||||++|++|+
T Consensus 139 ~LSGGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~-~~~D~i~vl~~G~ 214 (241)
T d2pmka1 139 GLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICK--GRTVIIIAHRL-STV-KNADRIIVMEKGK 214 (241)
T ss_dssp CCCHHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHT--TSEEEEECSSG-GGG-TTSSEEEEEETTE
T ss_pred ccCHHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhC--CCEEEEEECCH-HHH-HhCCEEEEEECCE
Confidence 4999999999999999999999999999999999999999999999964 89999999997 444 7899999999999
Q ss_pred eEEecChHHHH
Q psy2519 251 TAFIGSKDAAL 261 (622)
Q Consensus 251 iv~~G~~~~~~ 261 (622)
|++.|++++++
T Consensus 215 Iv~~G~~~ell 225 (241)
T d2pmka1 215 IVEQGKHKELL 225 (241)
T ss_dssp EEEEECHHHHH
T ss_pred EEEECCHHHHH
Confidence 99999999886
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.5e-48 Score=384.06 Aligned_cols=215 Identities=24% Similarity=0.310 Sum_probs=177.8
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
+++++||+|+|. ++.++|+++|+++ .+|+.++++|+| |||||||+++|+|+.+| .+|+|.+||+++
T Consensus 1 mle~knvsf~Y~-~~~~vL~~isl~i-----~~Ge~vaivG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~g~~i 66 (242)
T d1mv5a_ 1 MLSARHVDFAYD-DSEQILRDISFEA-----QPNSIIAFAGPS-----GGGKSTIFSLLERFYQP---TAGEITIDGQPI 66 (242)
T ss_dssp CEEEEEEEECSS-SSSCSEEEEEEEE-----CTTEEEEEECCT-----TSSHHHHHHHHTTSSCC---SBSCEEETTEES
T ss_pred CEEEEEEEEECC-CCCceeeeeEEEE-----cCCCEEEEECCC-----CCCHHHHHHHHHHhhCC---CCCEEEECCEEe
Confidence 468999999984 4567999999999 678888888776 89999999999999999 599999999998
Q ss_pred Cc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCC-------cccCCccCCcC
Q psy2519 97 EG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLM-------NSQHTRIGSSS 165 (622)
Q Consensus 97 ~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~-------~~~~~~v~~~~ 165 (622)
.. .+|++||||+|++.+++. ||+||+.++..... ...+ +.+.++..++. +..++.+++.
T Consensus 67 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~~~~~~~----~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~- 136 (242)
T d1mv5a_ 67 DNISLENWRSQIGFVSQDSAIMAG-TIRENLTYGLEGDY----TDED----LWQVLDLAFARSFVENMPDQLNTEVGER- 136 (242)
T ss_dssp TTTSCSCCTTTCCEECCSSCCCCE-EHHHHTTSCTTSCS----CHHH----HHHHHHHHTCTTTTTSSTTGGGCEESTT-
T ss_pred ccccHHHHHhheEEEccccccCCc-chhhheeccccccc----chhh----HHHHHHHHHhhhhhccCcccccccccCC-
Confidence 65 478999999999998887 99999977543221 2221 22334444333 3345555541
Q ss_pred CCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 166 ITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 166 ~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
...|||||||||+|||||+.+|+|||||||||+||+.++.++++.|+++++ |+|+|++||++ +.+ +.||||++
T Consensus 137 ---g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~-~~~D~i~v 209 (242)
T d1mv5a_ 137 ---GVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMK--GRTTLVIAHRL-STI-VDADKIYF 209 (242)
T ss_dssp ---SBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHT--TSEEEEECCSH-HHH-HHCSEEEE
T ss_pred ---CCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcC--CCEEEEEECCH-HHH-HhCCEEEE
Confidence 234999999999999999999999999999999999999999999999974 89999999996 455 56999999
Q ss_pred ecCCceEEecChHHHHH
Q psy2519 246 LADSRTAFIGSKDAALA 262 (622)
Q Consensus 246 L~~G~iv~~G~~~~~~~ 262 (622)
|++|++++.|+++++++
T Consensus 210 l~~G~iv~~G~~~eLl~ 226 (242)
T d1mv5a_ 210 IEKGQITGSGKHNELVA 226 (242)
T ss_dssp EETTEECCCSCHHHHHH
T ss_pred EECCEEEEECCHHHHHh
Confidence 99999999999998874
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.2e-46 Score=376.54 Aligned_cols=222 Identities=23% Similarity=0.283 Sum_probs=180.5
Q ss_pred eecCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEEC
Q psy2519 13 LFKNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVN 92 (622)
Q Consensus 13 ~~~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~ 92 (622)
+..+.++++||+|+|+.++.++|+++|+++ ++|+.++|+|++ |||||||+++|+|+.+| .+|+|.+|
T Consensus 9 ~~~g~I~~~nvsf~Y~~~~~~~L~~isl~i-----~~Ge~iaivG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~ 75 (253)
T d3b60a1 9 RATGDLEFRNVTFTYPGREVPALRNINLKI-----PAGKTVALVGRS-----GSGKSTIASLITRFYDI---DEGHILMD 75 (253)
T ss_dssp CCCCCEEEEEEEECSSSSSCCSEEEEEEEE-----CTTCEEEEEECT-----TSSHHHHHHHHTTTTCC---SEEEEEET
T ss_pred CCceEEEEEEEEEEeCCCCCceeeceEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhcccCC---CccEEEEC
Confidence 445679999999999666778999999999 788888888876 89999999999999999 59999999
Q ss_pred CEecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHH-----HHHHHHHHhCCCcccCCccCC
Q psy2519 93 GKPVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIA-----LINSLLIELGLMNSQHTRIGS 163 (622)
Q Consensus 93 G~~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~-----~v~~~l~~lgL~~~~~~~v~~ 163 (622)
|+++.. .+|+.++||+|++.+++. |+++|+.++.... .+.++..+ .+.+.++.+ ++..++.+++
T Consensus 76 g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~n~~~~~~~~----~~~~~i~~a~~~~~l~~~i~~l--~~gl~t~~~~ 148 (253)
T d3b60a1 76 GHDLREYTLASLRNQVALVSQNVHLFND-TVANNIAYARTEE----YSREQIEEAARMAYAMDFINKM--DNGLDTIIGE 148 (253)
T ss_dssp TEETTTBCHHHHHHTEEEECSSCCCCSS-BHHHHHHTTTTSC----CCHHHHHHHHHTTTCHHHHHHS--TTGGGSBCCT
T ss_pred CcccchhhhhhhhheEEEEeeccccCCc-chhhhhhhcCccc----CCHHHHHHHHHHHhHHHHHHhc--cccchhhhcC
Confidence 999875 478899999999987765 9999998863211 12221111 112233332 2334555554
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
. |. .|||||||||+|||||+.+|++|+||||||+||+.+...+++.|+++.+ ++|+|++||++ +.+ +.||||
T Consensus 149 ~-~~---~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~--~~Tvi~itH~l-~~~-~~~D~v 220 (253)
T d3b60a1 149 N-GV---LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQK--NRTSLVIAHRL-STI-EQADEI 220 (253)
T ss_dssp T-SC---SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHT--TSEEEEECSCG-GGT-TTCSEE
T ss_pred C-CC---CcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH-HHH-HhCCEE
Confidence 1 33 3999999999999999999999999999999999999999999999964 89999999997 444 689999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|+|++.|+++++++
T Consensus 221 ~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 221 VVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998864
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.3e-46 Score=377.67 Aligned_cols=217 Identities=22% Similarity=0.294 Sum_probs=181.9
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
++.++++||+|+|+.++.++|+++||++ ++|+.++++|++ |||||||+++|+|+.+| .+|+|.++|+
T Consensus 14 ~g~I~~~nvsf~Y~~~~~~vL~~isl~i-----~~Ge~vaivG~s-----GsGKSTLl~ll~gl~~p---~~G~I~i~g~ 80 (255)
T d2hyda1 14 QGRIDIDHVSFQYNDNEAPILKDINLSI-----EKGETVAFVGMS-----GGGKSTLINLIPRFYDV---TSGQILIDGH 80 (255)
T ss_dssp SCCEEEEEEEECSCSSSCCSEEEEEEEE-----CTTCEEEEECST-----TSSHHHHHTTTTTSSCC---SEEEEEETTE
T ss_pred CCEEEEEEEEEEeCCCCCcceeceEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHHhcCCc---cccccccCCE
Confidence 4569999999999767788999999999 788888888776 89999999999999999 5999999999
Q ss_pred ecCc----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCC-------CcccCCccCC
Q psy2519 95 PVEG----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGL-------MNSQHTRIGS 163 (622)
Q Consensus 95 ~~~~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL-------~~~~~~~v~~ 163 (622)
++.. .+|+.+|||+|++.+++ .||+|||.++... ...+ ++.++++..++ .+..++.+++
T Consensus 81 ~i~~~~~~~lr~~i~~v~Q~~~lf~-~Ti~eNi~~g~~~-----~~~~----~~~~al~~~~l~~~i~~lp~gl~t~i~~ 150 (255)
T d2hyda1 81 NIKDFLTGSLRNQIGLVQQDNILFS-DTVKENILLGRPT-----ATDE----EVVEAAKMANAHDFIMNLPQGYDTEVGE 150 (255)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCS-SBHHHHHGGGCSS-----CCHH----HHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EcccCCHHHhhheeeeeeccccCCC-CCHHHHHhccCcC-----CCHH----HHHHHHHHhCCHHHHHhccccccchhcC
Confidence 9865 47899999999998875 5999999886321 1222 23344444444 3445666665
Q ss_pred cCCCCccccChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccce
Q psy2519 164 SSITQKVVLSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKI 243 (622)
Q Consensus 164 ~~~~~~~gLSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v 243 (622)
. ...||||||||++|||||+.+|++|+||||||+||+.+...+++.|+++.+ ++|+|++||++ +.+ +.||||
T Consensus 151 ~----g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~--~~TvI~itH~~-~~~-~~~D~i 222 (255)
T d2hyda1 151 R----GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSK--DRTTLIVAHRL-STI-THADKI 222 (255)
T ss_dssp G----GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTT--TSEEEEECSSG-GGT-TTCSEE
T ss_pred C----CCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhc--CCEEEEEeCCH-HHH-HhCCEE
Confidence 1 234999999999999999999999999999999999999999999999874 78999999997 344 789999
Q ss_pred eeecCCceEEecChHHHHH
Q psy2519 244 ILLADSRTAFIGSKDAALA 262 (622)
Q Consensus 244 ~~L~~G~iv~~G~~~~~~~ 262 (622)
++|++|++++.|+++++++
T Consensus 223 i~l~~G~iv~~G~~~eLl~ 241 (255)
T d2hyda1 223 VVIENGHIVETGTHRELIA 241 (255)
T ss_dssp EEEETTEEEEEECHHHHHH
T ss_pred EEEECCEEEEECCHHHHHh
Confidence 9999999999999998863
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.5e-42 Score=344.52 Aligned_cols=206 Identities=22% Similarity=0.265 Sum_probs=179.5
Q ss_pred cccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 18 EEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 18 ~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
++++||++++ +++++|+++ ++|+.+.++|+| |||||||+++|+|+. | .+|+|.++|+++.
T Consensus 4 l~~~dv~~~~------~l~~isl~I-----~~Gei~~iiG~n-----GaGKSTLl~~l~Gl~-~---~~G~I~~~g~~i~ 63 (231)
T d1l7vc_ 4 MQLQDVAEST------RLGPLSGEV-----RAGEILHLVGPN-----GAGKSTLLARMAGMT-S---GKGSIQFAGQPLE 63 (231)
T ss_dssp EEEEEECCTT------TSCSEEEEE-----ETTCEEECBCCT-----TSSHHHHHHHHHTSC-C---CSSEEEESSSBGG
T ss_pred EEEECcccCc------eecCEEEEE-----cCCCEEEEECCC-----CCcHHHHHHHHhCCC-C---CceEEEECCEECC
Confidence 5788888874 488999999 678888888777 899999999999976 4 3899999999986
Q ss_pred c----cccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccC
Q psy2519 98 G----KFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLS 173 (622)
Q Consensus 98 ~----~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLS 173 (622)
. +.+...+|++|+.......++.+++.+...-+ .+.++++++++.+++.+..++.+.+ ||
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~--------LS 127 (231)
T d1l7vc_ 64 AWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDK--------TRTELLNDVAGALALDDKLGRSTNQ--------LS 127 (231)
T ss_dssp GSCHHHHHHHEEEECSCCCCCSSCBHHHHHHHHCSCT--------TCHHHHHHHHHHTTCTTTTTSBGGG--------CC
T ss_pred cCCHHHHHhhceeeeccccCCccccHHHHhhhccchh--------hHHHHHHHHHHhcCCHhHhCcChhh--------cC
Confidence 4 35667899999987777789999998754211 2245678899999999999998777 99
Q ss_pred hHHHHHHHHHHHHhh-------CCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeee
Q psy2519 174 GGERKRLSFATELLT-------DPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILL 246 (622)
Q Consensus 174 gGqrqRvsIA~aL~~-------~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L 246 (622)
|||||||+|||+|++ +|++|||||||+|||+.++..+.++|+++++ +|+|||++|||+ +++.++|||+++|
T Consensus 128 gG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~-~g~tii~vtHdl-~~~~~~~dri~vl 205 (231)
T d1l7vc_ 128 GGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQ-QGLAIVMSSHDL-NHTLRHAHRAWLL 205 (231)
T ss_dssp HHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHH-TTCEEEECCCCH-HHHHHHCSBCCBE
T ss_pred HHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHh-CCCEEEEEeCCH-HHHHHHCCEEEEE
Confidence 999999999999997 7799999999999999999999999999987 699999999996 7899999999999
Q ss_pred cCCceEEecChHHHH
Q psy2519 247 ADSRTAFIGSKDAAL 261 (622)
Q Consensus 247 ~~G~iv~~G~~~~~~ 261 (622)
++|+++++|+++++.
T Consensus 206 ~~G~iv~~G~~~ev~ 220 (231)
T d1l7vc_ 206 KGGKMLASGRREEVL 220 (231)
T ss_dssp ETTEECCCSBHHHHS
T ss_pred ECCEEEEECCHHHHh
Confidence 999999999999874
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.4e-41 Score=342.10 Aligned_cols=211 Identities=21% Similarity=0.258 Sum_probs=160.3
Q ss_pred cCCcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCE
Q psy2519 15 KNNEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGK 94 (622)
Q Consensus 15 ~~~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~ 94 (622)
.++++++|+++ ++.++|+|+||++ .+|+.++++|+| |||||||+++|+|+++| .+|+|.++|
T Consensus 36 ~~~i~~~~~~~----~g~pvL~~isl~i-----~~Ge~vaivG~n-----GsGKSTLl~~i~Gl~~p---~~G~I~~~g- 97 (281)
T d1r0wa_ 36 ENNVSFSHLCL----VGNPVLKNINLNI-----EKGEMLAITGST-----GSGKTSLLMLILGELEA---SEGIIKHSG- 97 (281)
T ss_dssp ----CHHHHHH----TTCEEEEEEEEEE-----CTTCEEEEEEST-----TSSHHHHHHHHHTSSCC---SEEEEECCS-
T ss_pred CCcEEEEEcCC----CCCeEEeCeEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhCCCcC---CCcEEEECC-
Confidence 34555566655 3468999999999 788888888887 89999999999999999 599999998
Q ss_pred ecCccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccCh
Q psy2519 95 PVEGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSG 174 (622)
Q Consensus 95 ~~~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSg 174 (622)
+++||+|++.+++. ||+||+.++.... .....+..+.+........+.+..++.++. ....|||
T Consensus 98 --------~i~~v~Q~~~l~~~-tv~eni~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~----~~~~LSg 161 (281)
T d1r0wa_ 98 --------RVSFCSQFSWIMPG-TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGE----GGVTLSG 161 (281)
T ss_dssp --------CEEEECSSCCCCSE-EHHHHHTTTSCCC---HHHHHHHHHHTTCHHHHTTSTTGGGCEECT----TCTTSCH
T ss_pred --------EEEEEeccccccCc-eeecccccccccc---chHHHHHHHHHHhHHHHHhchhhhhhhhhh----hccCCCH
Confidence 38999999988876 9999998864221 001111111111111223444445555544 1234999
Q ss_pred HHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceEEe
Q psy2519 175 GERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTAFI 254 (622)
Q Consensus 175 GqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv~~ 254 (622)
||||||+|||||+.+|+||||||||++||+.+..++++.+.+..+ .|+|+|++||++ + ..+.||||++|++|++++.
T Consensus 162 GqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~-~~~tvi~itH~~-~-~l~~aDrI~vl~~G~i~~~ 238 (281)
T d1r0wa_ 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLM-ANKTRILVTSKM-E-HLRKADKILILHQGSSYFY 238 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCT-TTSEEEEECSCH-H-HHHTCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhh-CCCEEEEEechH-H-HHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999986444433 589999999996 3 4578999999999999999
Q ss_pred cChHHHHH
Q psy2519 255 GSKDAALA 262 (622)
Q Consensus 255 G~~~~~~~ 262 (622)
|+++|+..
T Consensus 239 Gt~~eL~~ 246 (281)
T d1r0wa_ 239 GTFSELQS 246 (281)
T ss_dssp ECHHHHHH
T ss_pred CCHHHHhc
Confidence 99999863
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6e-40 Score=318.77 Aligned_cols=196 Identities=17% Similarity=0.268 Sum_probs=166.1
Q ss_pred CcccCCccccccccceeeeEeeeeEEEEcccCCCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEEECCEec
Q psy2519 17 NEEVPNVDFSEIVGSVQVYAIVNLLVIMDQTASTSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPV 96 (622)
Q Consensus 17 ~~~~~~~~~~~~~g~~~~l~~v~l~~~~~~~~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~ 96 (622)
.++++||+++| + .++|+++|+++ ++|+.++++|+| |||||||+|+|+|+++| .+|+|.+||+++
T Consensus 2 ~lev~~ls~~y--~-~~vl~~is~~i-----~~Gei~~l~G~N-----GsGKSTLl~~i~gl~~p---~~G~I~~~g~~i 65 (200)
T d1sgwa_ 2 KLEIRDLSVGY--D-KPVLERITMTI-----EKGNVVNFHGPN-----GIGKTTLLKTISTYLKP---LKGEIIYNGVPI 65 (200)
T ss_dssp EEEEEEEEEES--S-SEEEEEEEEEE-----ETTCCEEEECCT-----TSSHHHHHHHHTTSSCC---SEEEEEETTEEG
T ss_pred eEEEEEEEEEe--C-CeEEeceEEEE-----cCCCEEEEECCC-----CChHHHHHHHHhccccc---CCCEEEECCEeh
Confidence 47899999997 4 47999999999 678888888887 89999999999999999 599999999998
Q ss_pred CccccccEEEEecCCCCCCCCCHHHHHHHHHHcCCCccccHHHHHHHHHHHHHHhCCCcccCCccCCcCCCCccccChHH
Q psy2519 97 EGKFRSACGFMYQHDLFSPSLTVYEHLYFMALLKLDRRVKAYQRIALINSLLIELGLMNSQHTRIGSSSITQKVVLSGGE 176 (622)
Q Consensus 97 ~~~~r~~igyV~Q~~~l~~~lTV~E~l~f~~~l~~~~~~~~~~~~~~v~~~l~~lgL~~~~~~~v~~~~~~~~~gLSgGq 176 (622)
. +.+.+++|++|+..+++.+|++|++.+...++... ..+ +.+.+.++.+++.+. ++++++ |||||
T Consensus 66 ~-~~~~~i~~~~~~~~~~~~~t~~~~l~~~~~~~~~~-~~~----~~~~~~l~~~~~~~~-~~~~~~--------LSgG~ 130 (200)
T d1sgwa_ 66 T-KVKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVK-VNK----NEIMDALESVEVLDL-KKKLGE--------LSQGT 130 (200)
T ss_dssp G-GGGGGEEEECSSCCCCTTSBHHHHHHHHHHHTTCC-CCH----HHHHHHHHHTTCCCT-TSBGGG--------SCHHH
T ss_pred h-HhcCcEEEEeecccCCCCcCHHHHHHHHHHhcCCc-cCH----HHHHHHHHHcCCccc-ccccCc--------CCCcH
Confidence 6 46778999999999999999999999988776422 222 335677888887653 455666 99999
Q ss_pred HHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecC
Q psy2519 177 RKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLAD 248 (622)
Q Consensus 177 rqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~ 248 (622)
||||+|||+|+.+|+++||||||+|||+.++.++++.|++++++.|.+||.++|+. ++||++.+|++
T Consensus 131 ~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l-----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 131 IRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL-----SYCDVNENLHK 197 (200)
T ss_dssp HHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC-----TTSSEEEEGGG
T ss_pred HHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh-----hhcchhhheee
Confidence 99999999999999999999999999999999999999999886666666666653 47999999864
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.48 E-value=2.7e-15 Score=139.93 Aligned_cols=80 Identities=11% Similarity=0.088 Sum_probs=66.9
Q ss_pred cChHHHHHHHHHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCce
Q psy2519 172 LSGGERKRLSFATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRT 251 (622)
Q Consensus 172 LSgGqrqRvsIA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~i 251 (622)
+|+|+++|.++++++..+|+++++|||.. +........+.+.++.++.+.|+|+++|+. .....+|++..+.+|++
T Consensus 82 ~~~~~~~~~~l~~~~~~~~~vlllDE~~~--~~~~~~~~~~~l~~~l~~~~~~il~~~h~~--~~~~~~~~i~~~~~~~i 157 (178)
T d1ye8a1 82 ELAIPILERAYREAKKDRRKVIIIDEIGK--MELFSKKFRDLVRQIMHDPNVNVVATIPIR--DVHPLVKEIRRLPGAVL 157 (178)
T ss_dssp HHHHHHHHHHHHHHHHCTTCEEEECCCST--TGGGCHHHHHHHHHHHTCTTSEEEEECCSS--CCSHHHHHHHTCTTCEE
T ss_pred hhhhhhHHHHHHHHHhcCCCceeecCCCc--cchhhHHHHHHHHHHhccCCCEEEEEEccH--HHHHhhceEEEEeCCEE
Confidence 89999999999999999999999999843 344456677777777665689999999985 45678999999999999
Q ss_pred EEec
Q psy2519 252 AFIG 255 (622)
Q Consensus 252 v~~G 255 (622)
+.-+
T Consensus 158 ~~v~ 161 (178)
T d1ye8a1 158 IELT 161 (178)
T ss_dssp EECC
T ss_pred EEEC
Confidence 8654
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.76 E-value=5.3e-09 Score=109.39 Aligned_cols=74 Identities=16% Similarity=0.261 Sum_probs=63.1
Q ss_pred cccChHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+|||||.++++|..+ ..++++++||||+++||+..+..+.+.|++++. .+.-+|++||+| ++.+.+|+.+.
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~-~~~Q~I~iTH~~--~~~~~ad~~~~ 407 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRN-PDLQFIVISLKN--TMFEKSDALVG 407 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCB-TTBEEEEECSCH--HHHTTCSEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhC-CCCEEEEEeCCH--HHHHhcccEEE
Confidence 45899999998887544 346779999999999999999999999999864 466799999997 78899999875
Q ss_pred e
Q psy2519 246 L 246 (622)
Q Consensus 246 L 246 (622)
.
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=2.9e-06 Score=84.40 Aligned_cols=76 Identities=20% Similarity=0.395 Sum_probs=64.4
Q ss_pred cccChHHHHHHHHHHHH----hhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceee
Q psy2519 170 VVLSGGERKRLSFATEL----LTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIIL 245 (622)
Q Consensus 170 ~gLSgGqrqRvsIA~aL----~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~ 245 (622)
..+|+|||+...++..+ ..+|.++++|||-++|||.....+.+.|++.++ +.-||++||.| .+.+.+|+++.
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~--~~QviitTHsp--~~~~~~d~~~~ 293 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSK--HTQFIVITHNK--IVMEAADLLHG 293 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTT--TSEEEEECCCT--TGGGGCSEEEE
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhcc--CCEEEEEECCH--HHHHhcccEEE
Confidence 45999999998887654 346789999999999999999999999999975 57899999997 66789999866
Q ss_pred --ecCC
Q psy2519 246 --LADS 249 (622)
Q Consensus 246 --L~~G 249 (622)
+.+|
T Consensus 294 v~~~~g 299 (308)
T d1e69a_ 294 VTMVNG 299 (308)
T ss_dssp EEESSS
T ss_pred EEEeCC
Confidence 4566
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.92 E-value=0.0025 Score=60.57 Aligned_cols=44 Identities=23% Similarity=0.286 Sum_probs=35.6
Q ss_pred CCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccC
Q psy2519 189 DPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQP 232 (622)
Q Consensus 189 ~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~ 232 (622)
+..++|+||+..|=||.....+. ..++.+..+.+..++++||..
T Consensus 120 ~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~ 164 (234)
T d1wb9a2 120 EYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYF 164 (234)
T ss_dssp TTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCG
T ss_pred cccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchH
Confidence 34689999999999999998875 457778764567899999964
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.68 E-value=0.0031 Score=59.55 Aligned_cols=50 Identities=26% Similarity=0.323 Sum_probs=38.0
Q ss_pred hCCCeEEEeCCCCCCCHHHHHHHH-HHHHHHHhcCCCEEEEEeccCcHHHHhhc
Q psy2519 188 TDPALLLCDEPTTGLDSFSASKLI-RMMRELTSQRKKTVLCTIHQPSSELIDMF 240 (622)
Q Consensus 188 ~~P~lLlLDEPTsgLD~~~~~~i~-~~l~~l~~~~g~tvi~~tH~~~~~i~~~~ 240 (622)
.+..++|+||+..|=|+.....+. .+++.+.+ .+..++++||.. ++.++.
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~-~~~~~i~tTH~~--eL~~l~ 163 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHE-RRAYTLFATHYF--ELTALG 163 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH-HTCEEEEECCCH--HHHTCC
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhh-cCcceEEeeech--hhhhhh
Confidence 345689999999999998877754 55566666 688999999984 565544
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.18 E-value=0.013 Score=56.22 Aligned_cols=45 Identities=9% Similarity=0.137 Sum_probs=31.2
Q ss_pred hhCCCeEEEeCC-----CCC--CCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 187 LTDPALLLCDEP-----TTG--LDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 187 ~~~P~lLlLDEP-----Tsg--LD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
-.+|+++++|=- ..+ -+.....++++.|+++|++.+.+|++++|-
T Consensus 145 ~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~~l~~lA~~~~i~vi~~~q~ 196 (277)
T d1cr2a_ 145 GLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHL 196 (277)
T ss_dssp TTCCSEEEEEEEEC----------CHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred ccCcceEEEcccccccccccccchhHHHHHHHHHHHHHhhhccccceeeccc
Confidence 357999999942 111 122345667888999998889999988885
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=95.02 E-value=0.045 Score=51.97 Aligned_cols=47 Identities=13% Similarity=0.128 Sum_probs=37.0
Q ss_pred HHhhCCCeEEEeCCCC-----CCCHHHHHHHHHHHHHHHhcCCCEEEEEecc
Q psy2519 185 ELLTDPALLLCDEPTT-----GLDSFSASKLIRMMRELTSQRKKTVLCTIHQ 231 (622)
Q Consensus 185 aL~~~P~lLlLDEPTs-----gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~ 231 (622)
.-..+|+++++|--+. --|.....++++.|++++++.|.+||++.|.
T Consensus 128 ~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 128 RAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 3457999999995532 2366777889999999998789999999885
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.49 E-value=0.15 Score=47.09 Aligned_cols=60 Identities=23% Similarity=0.263 Sum_probs=42.7
Q ss_pred hCCCeEEEeCCCC---CCCHHHHHHHHHHHHHHHhcCCCEEEEEeccC---------cHHHHhhccceeeec
Q psy2519 188 TDPALLLCDEPTT---GLDSFSASKLIRMMRELTSQRKKTVLCTIHQP---------SSELIDMFDKIILLA 247 (622)
Q Consensus 188 ~~P~lLlLDEPTs---gLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~---------~~~i~~~~D~v~~L~ 247 (622)
.+|++++.|--+. +.+..........+.+++++.+.|++++.|-. ...+..++|-++.|.
T Consensus 115 ~~~~~vviDs~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~ad~vi~l~ 186 (242)
T d1tf7a2 115 FKPARIAIDSLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQ 186 (242)
T ss_dssp TCCSEEEEECHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEE
T ss_pred cCCceeeeecchhhhcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeEeeccccccCCcceeeecceEEEEE
Confidence 4799999886543 45677767777777777777899999998842 113456788888774
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=93.50 E-value=0.02 Score=50.18 Aligned_cols=27 Identities=11% Similarity=0.080 Sum_probs=19.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+|+++++.|+ |||||||+.+.|+..+.
T Consensus 3 ~g~iI~l~G~----~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 3 GGNILLLSGH----PGSGKSTIAEALANLPG 29 (176)
T ss_dssp TTEEEEEEEC----TTSCHHHHHHHHHTCSS
T ss_pred CCeEEEEECC----CCCCHHHHHHHHHHHhC
Confidence 3444544343 59999999999997653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.34 E-value=0.022 Score=53.39 Aligned_cols=24 Identities=13% Similarity=0.045 Sum_probs=15.8
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
||+|||||+|.|.|...- .+|+|.
T Consensus 104 SGVGKSTLiN~L~~~~~~---~T~~vs 127 (225)
T d1u0la2 104 SGVGKSSLLNAINPGLKL---RVSEVS 127 (225)
T ss_dssp TTSSHHHHHHHHSTTCCC---C-----
T ss_pred CCCCHHHHHHhhcchhhh---hccCcc
Confidence 699999999999987654 257764
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.34 E-value=0.023 Score=49.76 Aligned_cols=29 Identities=17% Similarity=0.100 Sum_probs=20.4
Q ss_pred CCCcceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 48 ASTSKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 48 ~~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
...|.++.+.|. |||||||+-+.|+-++.
T Consensus 3 ~~~g~~I~l~G~----~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 3 ATQGFTIFLTGY----MNSGKDAIARALQVTLN 31 (183)
T ss_dssp TTCCEEEEEECS----TTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECC----CCCCHHHHHHHHHHHHh
Confidence 344555545443 69999999999997653
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=92.98 E-value=0.024 Score=48.63 Aligned_cols=13 Identities=31% Similarity=0.414 Sum_probs=11.6
Q ss_pred CCCChHHHHHHHh
Q psy2519 64 PNVDFSELIRLFL 76 (622)
Q Consensus 64 sGaGKSTLl~~l~ 76 (622)
||||||||.+.|.
T Consensus 11 pGsGKTTla~~L~ 23 (152)
T d1ly1a_ 11 PGSGKSTWAREFI 23 (152)
T ss_dssp TTSSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 6999999999875
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.98 E-value=0.019 Score=49.31 Aligned_cols=24 Identities=17% Similarity=0.224 Sum_probs=19.7
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
|+++++|.+ |+|||||++.|.+-.
T Consensus 1 ~KI~liG~~-----nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 1 GKLLFLGLD-----NAGKTTLLHMLKNDR 24 (166)
T ss_dssp CEEEEECST-----TSSHHHHHHHHHHSC
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCC
Confidence 467778776 799999999999854
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.96 E-value=0.024 Score=49.92 Aligned_cols=26 Identities=23% Similarity=0.256 Sum_probs=19.8
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+..+++++|.+ |||||||++.|.+-.
T Consensus 12 k~~kI~lvG~~-----~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLD-----NAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEET-----TSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34466777765 799999999998854
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.0098 Score=52.44 Aligned_cols=24 Identities=13% Similarity=-0.027 Sum_probs=18.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVID 81 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~~ 81 (622)
+.|.|++ |+|||||++.++..+..
T Consensus 4 v~ItG~~-----GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 4 VFLTGPP-----GVGKTTLIHKASEVLKS 27 (189)
T ss_dssp EEEESCC-----SSCHHHHHHHHHHHHHH
T ss_pred EEEECCC-----CCcHHHHHHHHHHHHHH
Confidence 4445554 89999999999988764
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=92.58 E-value=0.036 Score=48.46 Aligned_cols=16 Identities=6% Similarity=0.337 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+-.+
T Consensus 14 ~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 14 PGTGKTSMAEMIAAEL 29 (174)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5999999999999654
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=92.49 E-value=0.036 Score=48.36 Aligned_cols=17 Identities=12% Similarity=-0.040 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+.+.|+..+.
T Consensus 15 ~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 15 SGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSCHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 59999999999997653
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=92.48 E-value=0.021 Score=49.71 Aligned_cols=17 Identities=6% Similarity=0.239 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
||||||||++.|...+.
T Consensus 11 ~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 11 SGTGKTTLLKKLIPALC 27 (170)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 58999999999987554
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.37 E-value=1.3 Score=39.69 Aligned_cols=60 Identities=13% Similarity=0.011 Sum_probs=38.6
Q ss_pred hCCCeEEEeCCCCCC----CHHHHHHHHHHHHHHHhcCCCEEEEEeccCcH--------HHHhhccceeeec
Q psy2519 188 TDPALLLCDEPTTGL----DSFSASKLIRMMRELTSQRKKTVLCTIHQPSS--------ELIDMFDKIILLA 247 (622)
Q Consensus 188 ~~P~lLlLDEPTsgL----D~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~--------~i~~~~D~v~~L~ 247 (622)
.+|++++.|--+.-. +.....+....+.+.+++.|.|++++.|.... .....+|.++.+.
T Consensus 124 ~~~~~viiD~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 195 (242)
T d1tf7a1 124 YRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILR 195 (242)
T ss_dssp HTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEE
T ss_pred hccchhhhhHHHHHHHhccChhHHHHHHHHHHHHHHhcCCceEEeecccccccccccCcceeeeccEEEEEE
Confidence 479999999765432 33444445555555555579999999986421 3445677777663
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=92.03 E-value=0.046 Score=49.20 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||+|.|+|..
T Consensus 25 ~I~lvG~~-----n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRS-----NVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBT-----TSSHHHHHHHHHTC-
T ss_pred EEEEECCC-----CCCHHHHHHHhcCCC
Confidence 46677665 799999999999864
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=91.88 E-value=0.026 Score=49.51 Aligned_cols=24 Identities=17% Similarity=0.022 Sum_probs=18.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.+++.|+ ||||||||.+.|+....
T Consensus 9 ~I~i~G~-----~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 9 TVAILGG-----ESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEECC-----TTSHHHHHHHHHHHHTT
T ss_pred EEEEECC-----CCCCHHHHHHHHHHHhC
Confidence 3455555 48999999999997653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=91.79 E-value=0.017 Score=54.36 Aligned_cols=34 Identities=18% Similarity=0.105 Sum_probs=18.3
Q ss_pred CCcceEEEecCCcCCCCCChHHHHHHHhCCCCCCCceeeEEE
Q psy2519 49 STSKTVILFKNNEEVPNVDFSELIRLFLSQVIDDCIIDGDIR 90 (622)
Q Consensus 49 ~~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~~~~~~~G~I~ 90 (622)
+++..+++|. ||+|||||+|.|.|...- .+|+|.
T Consensus 96 ~~~~~vl~G~-----SGVGKSSLiN~L~~~~~~---~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQ-----SGVGKSSLLNAISPELGL---RTNEIS 129 (231)
T ss_dssp TTSEEEEEES-----HHHHHHHHHHHHCC-------------
T ss_pred ccceEEEECC-----CCccHHHHHHhhccHhHh---hhcccc
Confidence 3445555544 589999999999986543 367775
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=91.64 E-value=0.044 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.173 Sum_probs=18.0
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|+|...
T Consensus 4 I~lvG~~-----nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 4 VVIAGRP-----NAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEEST-----TSSHHHHHHHHHTSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCc
Confidence 4556665 7999999999998753
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.48 E-value=0.045 Score=48.45 Aligned_cols=22 Identities=23% Similarity=0.179 Sum_probs=17.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||+|.|.|..
T Consensus 3 I~lvG~~-----nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 3 IIFAGRS-----NVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEBT-----TSSHHHHHHHHHSCC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4566665 799999999999864
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=91.47 E-value=0.0065 Score=54.40 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=19.5
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.++|+|+| ||||||+|++|.-.+
T Consensus 24 ~~~tvi~G~N-----GsGKStil~Ai~~~L 48 (222)
T d1qhla_ 24 ELVTTLSGGN-----GAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHHHSCC-----SHHHHHHHHHHHHHH
T ss_pred CCeEEEECCC-----CCCHHHHHHHHHHHh
Confidence 4567777777 799999999997543
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=91.41 E-value=0.029 Score=49.32 Aligned_cols=30 Identities=10% Similarity=0.264 Sum_probs=19.5
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECC
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNG 93 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G 93 (622)
||||||||++.|...++.....-|.|.-++
T Consensus 10 ~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 10 KHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 489999999988876654212345554443
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=91.38 E-value=0.081 Score=46.90 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=17.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.. |+|||||+|.|.|..
T Consensus 11 V~iiG~~-----~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 11 VAIVGRP-----NVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEECST-----TSSHHHHHHHHHTST
T ss_pred EEEECCC-----CCCHHHHHHHHHCCC
Confidence 3555554 799999999999864
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=91.27 E-value=0.047 Score=47.27 Aligned_cols=16 Identities=19% Similarity=0.158 Sum_probs=14.1
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+.+.|+..+
T Consensus 11 ~GsGKTTva~~L~~~~ 26 (176)
T d2bdta1 11 AGVGKSTTCKRLAAQL 26 (176)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHc
Confidence 5999999999999654
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=91.27 E-value=0.054 Score=47.09 Aligned_cols=17 Identities=18% Similarity=0.178 Sum_probs=15.3
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+-+.|+..+.
T Consensus 12 ~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 12 SSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp TTSSHHHHHHHHHHHSS
T ss_pred CCCCHHHHHHHHHHHcC
Confidence 69999999999998764
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=91.17 E-value=0.034 Score=49.04 Aligned_cols=25 Identities=12% Similarity=0.032 Sum_probs=18.7
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
-+++++|.+ ++|||||+|.|.|...
T Consensus 17 ~~I~lvG~~-----NvGKSSL~n~L~~~~~ 41 (188)
T d1puia_ 17 IEVAFAGRS-----NAGKSSALNTLTNQKS 41 (188)
T ss_dssp EEEEEEECT-----TSSHHHHHTTTCCC--
T ss_pred CEEEEECCC-----CCCHHHHHHHHhCCCc
Confidence 356777765 6999999999998643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.89 E-value=0.06 Score=48.01 Aligned_cols=17 Identities=18% Similarity=0.247 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
||||||||.+.|....+
T Consensus 11 sG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 11 SAVGKSTVVRCLRERIP 27 (182)
T ss_dssp TTSSHHHHHHHHHHHST
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999987654
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.81 E-value=0.066 Score=47.58 Aligned_cols=17 Identities=6% Similarity=-0.011 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
||||||||.+.|.-.+.
T Consensus 31 ~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 31 SRSGKTTLANQLSQTLR 47 (198)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999986544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=90.70 E-value=0.055 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.249 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||+|.|.|..
T Consensus 7 ~I~iiG~~-----nvGKSSLin~L~~~~ 29 (179)
T d1egaa1 7 FIAIVGRP-----NVGKSTLLNKLLGQK 29 (179)
T ss_dssp EEEEECSS-----SSSHHHHHHHHHTCS
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 34556654 799999999999853
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=90.61 E-value=0.05 Score=46.59 Aligned_cols=22 Identities=0% Similarity=-0.073 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |||||||++.+.+-.
T Consensus 3 ivlvG~~-----~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLD-----AAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECST-----TSSHHHHHHHHHHHC
T ss_pred EEEECCC-----CCCHHHHHHHHhcCC
Confidence 4556554 899999999998643
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=90.41 E-value=0.071 Score=45.45 Aligned_cols=23 Identities=13% Similarity=0.046 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|+ |||||||+-+.|+-.+
T Consensus 4 ~I~l~G~-----~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGP-----MGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECC-----TTSCHHHHHHHHHHHT
T ss_pred eEEEECC-----CCCCHHHHHHHHHHHh
Confidence 4555555 4899999999999665
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=90.40 E-value=0.061 Score=47.21 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=16.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|+|...
T Consensus 3 V~liG~~-----n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 3 VLIVGRP-----NVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEECCT-----TSSHHHHHHHHHC---
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCc
Confidence 3455554 7999999999998653
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=90.40 E-value=0.059 Score=47.70 Aligned_cols=24 Identities=29% Similarity=0.189 Sum_probs=18.7
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
|.++++|.+ |+|||||+|.|.|..
T Consensus 6 ~~I~lvG~~-----~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 6 GFVAIVGKP-----NVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEEECST-----TSSHHHHHHHHHTSC
T ss_pred cEEEEECCC-----CCCHHHHHHHHhCCC
Confidence 345666554 799999999999864
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.39 E-value=0.055 Score=48.86 Aligned_cols=23 Identities=17% Similarity=0.209 Sum_probs=18.0
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |||||||+|.|.|..
T Consensus 5 ~V~lvG~~-----n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQ-----NSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CCCHHHHHHHHhCCC
Confidence 45566554 799999999999864
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.36 E-value=5.8 Score=36.96 Aligned_cols=83 Identities=18% Similarity=0.226 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHHHhhC-CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCcHHHHhhccceeeecCCceE
Q psy2519 174 GGERKRLSFATELLTD-PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPSSELIDMFDKIILLADSRTA 252 (622)
Q Consensus 174 gGqrqRvsIA~aL~~~-P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~~~i~~~~D~v~~L~~G~iv 252 (622)
-..+++..+....+.+ +-+++||.-= |+. + ++.+.. .|.-||+||=+. .+...++ .+.++.
T Consensus 119 ~~~~~~~~~~~~~L~~kr~LlVLDDv~---~~~---~----~~~~~~-~~srilvTTR~~--~v~~~~~-----~~~~~~ 180 (277)
T d2a5yb3 119 TSVVLKRMICNALIDRPNTLFVFDDVV---QEE---T----IRWAQE-LRLRCLVTTRDV--EISNAAS-----QTCEFI 180 (277)
T ss_dssp CHHHHHHHHHHHHTTSTTEEEEEEEEC---CHH---H----HHHHHH-TTCEEEEEESBG--GGGGGCC-----SCEEEE
T ss_pred hhHHHHHHHHHHHhccCCeeEecchhh---HHh---h----hhhhcc-cCceEEEEeehH--HHHHhcC-----CCCceE
Confidence 3445555555555554 5577899531 221 1 222333 466777777763 3322221 111222
Q ss_pred Ee--cChHHHHHHHHhCCCCCCCC
Q psy2519 253 FI--GSKDAALAFLESQGYPCPYG 274 (622)
Q Consensus 253 ~~--G~~~~~~~~~~~~g~~~p~~ 274 (622)
.- =+.+|+.+.|...++..|..
T Consensus 181 ~l~~L~~~ea~~Lf~~~~~~~~~~ 204 (277)
T d2a5yb3 181 EVTSLEIDECYDFLEAYGMPMPVG 204 (277)
T ss_dssp ECCCCCHHHHHHHHHHTSCCCC--
T ss_pred ECCCCCHHHHHHHHHHHhCCccCc
Confidence 21 24677888998888766543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=90.17 E-value=0.057 Score=46.52 Aligned_cols=23 Identities=9% Similarity=0.060 Sum_probs=17.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |||||||++.+.+...
T Consensus 8 I~ivG~~-----~vGKSSLi~~~~~~~~ 30 (169)
T d1upta_ 8 ILILGLD-----GAGKTTILYRLQVGEV 30 (169)
T ss_dssp EEEECST-----TSSHHHHHHHHHHSSC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCC
Confidence 4556554 8999999999988653
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=90.09 E-value=0.045 Score=48.78 Aligned_cols=23 Identities=17% Similarity=0.036 Sum_probs=17.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.+.++|++ |+|||||+|.|+|..
T Consensus 3 ~VaiiG~~-----nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 3 DVGLVGFP-----SVGKSTLLSVVSSAK 25 (185)
T ss_dssp CEEEESST-----TSSHHHHHHHSEEEC
T ss_pred eEEEECCC-----CCCHHHHHHHHhCCC
Confidence 35667665 699999999998743
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=90.06 E-value=0.093 Score=46.62 Aligned_cols=22 Identities=9% Similarity=-0.025 Sum_probs=17.3
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ +||||||+|.|.|..
T Consensus 8 IaiiG~~-----naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHI-----DHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECT-----TSSHHHHHHHHHTTC
T ss_pred EEEEeCC-----CCcHHHHHHHHHHhc
Confidence 4557665 599999999999754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=89.48 E-value=0.061 Score=47.64 Aligned_cols=22 Identities=14% Similarity=-0.011 Sum_probs=17.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+.++|.+ |+|||||+|.|+|..
T Consensus 4 VaivG~~-----nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYP-----NAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCG-----GGCHHHHHHHHCSSC
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 5666665 799999999999864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=89.45 E-value=0.079 Score=46.01 Aligned_cols=23 Identities=13% Similarity=0.241 Sum_probs=17.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |||||||++.|.+...
T Consensus 5 i~ivG~~-----~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLD-----NAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECST-----TSSHHHHHHHHTTCCC
T ss_pred EEEECCC-----CCCHHHHHHHHcCCCC
Confidence 4556554 7999999999988643
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=89.39 E-value=0.093 Score=51.70 Aligned_cols=52 Identities=15% Similarity=0.182 Sum_probs=31.9
Q ss_pred HHHHHhhCCCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCC-EEEEEeccCcHHHHhhcccee
Q psy2519 182 FATELLTDPALLLCDEPTTGLDSFSASKLIRMMRELTSQRKK-TVLCTIHQPSSELIDMFDKII 244 (622)
Q Consensus 182 IA~aL~~~P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~-tvi~~tH~~~~~i~~~~D~v~ 244 (622)
+-.+|-.+|+.++++|--+. .+ . +.++.+. .|. -++.|.|-. ...+..+|+.
T Consensus 228 l~~~lR~~pd~iivgEiR~~---ea-~---~~l~a~~--tGh~g~~tT~Ha~--s~~~a~~Rl~ 280 (323)
T d1g6oa_ 228 LKSCLRMRPDRIILGELRSS---EA-Y---DFYNVLC--SGHKGTLTTLHAG--SSEEAFIRLA 280 (323)
T ss_dssp HHHHTTSCCSEEEESCCCST---HH-H---HHHHHHH--TTCSCEEEEECCS--SHHHHHHHHH
T ss_pred HHHHhccCCCcccCCccCch---hH-H---HHHHHHH--hcCCcEEEEECCC--CHHHHHHHHH
Confidence 34456678999999998742 22 2 3344343 354 599999964 3344555553
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=89.20 E-value=0.088 Score=45.58 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=13.6
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+-.+
T Consensus 13 pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 13 PGVGKTTLGKELASKS 28 (173)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5899999999998543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=89.07 E-value=0.084 Score=48.71 Aligned_cols=15 Identities=13% Similarity=-0.037 Sum_probs=12.8
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
+|||||||++.|...
T Consensus 9 ~GsGKTTLl~~ll~~ 23 (244)
T d1yrba1 9 AGSGKTTLTGEFGRY 23 (244)
T ss_dssp TTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHH
Confidence 489999999999753
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=88.28 E-value=0.12 Score=46.09 Aligned_cols=22 Identities=5% Similarity=-0.118 Sum_probs=17.0
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
..++++|++ ||||||+-+.|+-
T Consensus 7 ~iI~i~G~p-----GSGKsT~a~~La~ 28 (194)
T d1qf9a_ 7 NVVFVLGGP-----GSGKGTQCANIVR 28 (194)
T ss_dssp EEEEEEEST-----TSSHHHHHHHHHH
T ss_pred cEEEEECCC-----CCCHHHHHHHHHH
Confidence 345566664 8999999999984
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=88.22 E-value=0.11 Score=45.49 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=15.4
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+.++..
T Consensus 10 ~GsGKTT~~~~La~~L~~ 27 (194)
T d1nksa_ 10 PGVGKSTVLAKVKEILDN 27 (194)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 489999999999987653
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=88.22 E-value=0.1 Score=46.70 Aligned_cols=17 Identities=6% Similarity=-0.109 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
.||||||+++.|+..+.
T Consensus 18 ~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 18 IGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp TTSCHHHHHHTTGGGTT
T ss_pred CCCCHHHHHHHHHHHhC
Confidence 69999999999987553
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=88.21 E-value=0.13 Score=44.87 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=17.6
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |||||||++.|.+..
T Consensus 17 kI~vvG~~-----~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLD-----NAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHTTS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 44555554 899999999999854
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.09 E-value=0.079 Score=47.05 Aligned_cols=17 Identities=0% Similarity=-0.021 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
|||||||+-+.|+-++.
T Consensus 28 pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 28 SGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 69999999999987653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.05 E-value=0.15 Score=45.11 Aligned_cols=13 Identities=31% Similarity=0.401 Sum_probs=11.6
Q ss_pred CCCChHHHHHHHh
Q psy2519 64 PNVDFSELIRLFL 76 (622)
Q Consensus 64 sGaGKSTLl~~l~ 76 (622)
|||||||+.+-++
T Consensus 23 pGsGKST~a~~l~ 35 (172)
T d1yj5a2 23 PGAGKSTFIQEHL 35 (172)
T ss_dssp TTSSHHHHHHHHT
T ss_pred CCCCHHHHHHHHH
Confidence 6999999999885
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.01 E-value=0.12 Score=45.18 Aligned_cols=18 Identities=17% Similarity=0.248 Sum_probs=15.0
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
|||||||+.+.|+-++..
T Consensus 10 ~GsGKsT~~~~L~~~l~~ 27 (190)
T d1khta_ 10 PGVGSTTSSQLAMDNLRK 27 (190)
T ss_dssp TTSCHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 589999999999876543
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=87.96 E-value=0.13 Score=44.94 Aligned_cols=22 Identities=18% Similarity=0.067 Sum_probs=17.3
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|+ |||||||+-+.|+-.+
T Consensus 3 I~liG~-----~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGF-----MGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECC-----TTSCHHHHHHHHHHHH
T ss_pred EEEECC-----CCCCHHHHHHHHHHHh
Confidence 455655 4899999999999655
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=87.78 E-value=0.11 Score=50.05 Aligned_cols=24 Identities=21% Similarity=0.048 Sum_probs=18.5
Q ss_pred cceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 51 SKTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 51 ~~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+-++++|+| ||||||+|++|.-.+
T Consensus 25 ~lnvlvG~N-----gsGKS~iL~Ai~~~l 48 (308)
T d1e69a_ 25 RVTAIVGPN-----GSGKSNIIDAIKWVF 48 (308)
T ss_dssp SEEEEECCT-----TTCSTHHHHHHHHTS
T ss_pred CeEEEECCC-----CCcHHHHHHHHHHHh
Confidence 356677777 799999999995543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.51 E-value=0.11 Score=46.95 Aligned_cols=23 Identities=9% Similarity=-0.032 Sum_probs=17.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|.+ |+|||||++.|.+..
T Consensus 2 ~V~ivG~~-----~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 2 AVLFVGLC-----DSGKTLLFVRLLTGQ 24 (207)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CCCHHHHHHHHHcCC
Confidence 35566665 799999999998754
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=87.14 E-value=0.16 Score=46.33 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
||||||||.+.|.-..+
T Consensus 11 SG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 11 SGAGKSSLIQALLKTQP 27 (205)
T ss_dssp TTSCHHHHHHHHHHHSC
T ss_pred CCCCHHHHHHHHHhhCC
Confidence 59999999999876543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=86.93 E-value=0.042 Score=47.52 Aligned_cols=22 Identities=36% Similarity=0.341 Sum_probs=17.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||+|.|+|..
T Consensus 3 I~liG~~-----n~GKSSLin~l~g~~ 24 (160)
T d1xzpa2 3 MVIVGKP-----NVGKSTLLNRLLNED 24 (160)
T ss_dssp EEEECCH-----HHHTCHHHHHHHHHT
T ss_pred EEEECCC-----CCCHHHHHHHHhCCC
Confidence 4566665 799999999999854
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=86.60 E-value=0.16 Score=48.07 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=17.9
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|.|...
T Consensus 35 I~LvG~t-----g~GKSSliN~ilg~~~ 57 (257)
T d1h65a_ 35 ILVMGKG-----GVGKSSTVNSIIGERV 57 (257)
T ss_dssp EEEEEST-----TSSHHHHHHHHHTSCC
T ss_pred EEEECCC-----CCcHHHHHHHHhCCCc
Confidence 3445554 8999999999999753
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.86 E-value=0.17 Score=50.52 Aligned_cols=22 Identities=18% Similarity=0.114 Sum_probs=18.1
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHh
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFL 76 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~ 76 (622)
++-++|+|+| ||||||+|.+|.
T Consensus 25 ~~l~~i~G~N-----GsGKS~ileAi~ 46 (427)
T d1w1wa_ 25 SNFTSIIGPN-----GSGKSNMMDAIS 46 (427)
T ss_dssp CSEEEEECST-----TSSHHHHHHHHH
T ss_pred CCEEEEECCC-----CCCHHHHHHHHH
Confidence 5567777777 899999999984
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.75 E-value=0.19 Score=43.69 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=18.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
.++++|. |||||||+-+.|+-.+.
T Consensus 3 ~IvliG~-----~G~GKSTig~~La~~l~ 26 (165)
T d2iyva1 3 KAVLVGL-----PGSGKSTIGRRLAKALG 26 (165)
T ss_dssp SEEEECS-----TTSSHHHHHHHHHHHHT
T ss_pred cEEEECC-----CCCCHHHHHHHHHHHhC
Confidence 3556655 48999999999997653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=85.50 E-value=0.18 Score=44.18 Aligned_cols=22 Identities=5% Similarity=-0.064 Sum_probs=16.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|++ ||||||+-+.|+-..
T Consensus 3 I~i~G~p-----GSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLP-----GAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECST-----TSSHHHHHHHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHHHHH
Confidence 3556564 899999999998543
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=85.48 E-value=0.23 Score=43.34 Aligned_cols=23 Identities=17% Similarity=0.254 Sum_probs=17.1
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 18 kI~vvG~~-----~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 18 RILLLGLD-----NAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEEEST-----TSSHHHHHHHHCCSC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 34555554 799999999997753
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=85.46 E-value=0.23 Score=44.04 Aligned_cols=21 Identities=14% Similarity=0.135 Sum_probs=16.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
.++++|+ |||||||.-+.|+-
T Consensus 5 riil~G~-----pGSGKsT~a~~La~ 25 (190)
T d1ak2a1 5 RAVLLGP-----PGAGKGTQAPKLAK 25 (190)
T ss_dssp EEEEECC-----TTSSHHHHHHHHHH
T ss_pred EEEEECC-----CCCCHHHHHHHHHH
Confidence 4455555 48999999999994
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=85.39 E-value=0.19 Score=48.88 Aligned_cols=23 Identities=17% Similarity=-0.015 Sum_probs=16.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
+.++|.+ .+|||||+|+|+|-..
T Consensus 3 v~lvG~p-----n~GKStlfn~lt~~~~ 25 (319)
T d1wxqa1 3 IGVVGKP-----NVGKSTFFSAATLVDV 25 (319)
T ss_dssp EEEEECT-----TSSHHHHHHHHHC---
T ss_pred EeEECCC-----CCCHHHHHHHHHCCCC
Confidence 4567766 4999999999998643
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=85.34 E-value=0.19 Score=47.01 Aligned_cols=18 Identities=11% Similarity=0.165 Sum_probs=15.5
Q ss_pred CCCChHHHHHHHhCCCCC
Q psy2519 64 PNVDFSELIRLFLSQVID 81 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~ 81 (622)
||||||||.+.|++.+..
T Consensus 41 PGtGKT~la~~la~~~~~ 58 (273)
T d1gvnb_ 41 PGSGKTSLRSAIFEETQG 58 (273)
T ss_dssp TTSCTHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHhhc
Confidence 599999999999987653
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=85.24 E-value=0.17 Score=43.80 Aligned_cols=22 Identities=5% Similarity=-0.010 Sum_probs=16.3
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|++ |+|||||++.+.+-.
T Consensus 5 i~i~G~~-----~~GKTsLl~~l~~~~ 26 (164)
T d1zd9a1 5 LTLVGLQ-----YSGKTTFVNVIASGQ 26 (164)
T ss_dssp EEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CCCHHHHHHHHHcCC
Confidence 4556554 799999999887643
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=85.08 E-value=0.22 Score=43.56 Aligned_cols=16 Identities=6% Similarity=0.086 Sum_probs=13.7
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+-.+
T Consensus 11 ~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 11 RGCGMTTVGRELARAL 26 (170)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 4899999999998554
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=84.99 E-value=0.22 Score=44.24 Aligned_cols=22 Identities=14% Similarity=-0.003 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.+++.|++ ||||||+-+.|+-.
T Consensus 5 ~I~i~Gpp-----GsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAP-----ASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEEST-----TSSHHHHHHHHHHH
T ss_pred EEEEECCC-----CCCHHHHHHHHHHH
Confidence 35566664 89999999999844
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.30 E-value=0.2 Score=43.64 Aligned_cols=21 Identities=10% Similarity=0.192 Sum_probs=15.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+-
T Consensus 8 i~vvG~~-----~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNS-----SVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECST-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHcC
Confidence 4556554 89999999988653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.13 E-value=0.21 Score=43.63 Aligned_cols=22 Identities=18% Similarity=0.327 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 5 i~~vG~~-----~vGKSsLi~~~~~~~ 26 (175)
T d1ky3a_ 5 VIILGDS-----GVGKTSLMHRYVNDK 26 (175)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CcCHHHHHHHHHcCC
Confidence 4566554 899999999987643
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.11 E-value=0.22 Score=45.06 Aligned_cols=17 Identities=6% Similarity=-0.101 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
+||||||+-+.|+-.+.
T Consensus 11 ~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 11 TASGKSSVCAKIVQLLG 27 (213)
T ss_dssp TTSSHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHhc
Confidence 69999999999986553
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=83.92 E-value=0.24 Score=43.72 Aligned_cols=22 Identities=9% Similarity=0.075 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|+ |||||||+-+.|+-.+
T Consensus 3 I~i~G~-----pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 3 IVLMGL-----PGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEECS-----TTSSHHHHHHHHHHHH
T ss_pred EEEECC-----CCCCHHHHHHHHHHHH
Confidence 345555 4899999999999644
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.87 E-value=0.31 Score=44.51 Aligned_cols=17 Identities=0% Similarity=0.036 Sum_probs=15.1
Q ss_pred CCChHHHHHHHhCCCCC
Q psy2519 65 NVDFSELIRLFLSQVID 81 (622)
Q Consensus 65 GaGKSTLl~~l~g~~~~ 81 (622)
||||||+.+.|+-.+..
T Consensus 13 GsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 13 RTGKTTQCNILYKKLQP 29 (214)
T ss_dssp TSSHHHHHHHHHHHTTT
T ss_pred CCcHHHHHHHHHHHHHh
Confidence 89999999999987764
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=83.84 E-value=0.25 Score=44.09 Aligned_cols=24 Identities=0% Similarity=-0.090 Sum_probs=18.0
Q ss_pred CcceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 50 TSKTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 50 ~~~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++.++++|++ ||||||+-+.|+-.
T Consensus 8 ~~iI~l~G~p-----GSGKsT~a~~La~~ 31 (194)
T d3adka_ 8 SKIIFVVGGP-----GSGKGTQCEKIVQK 31 (194)
T ss_dssp SCEEEEEECT-----TSSHHHHHHHHHHH
T ss_pred CcEEEEECCC-----CCCHHHHHHHHHHH
Confidence 3445556664 89999999999864
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=83.76 E-value=0.19 Score=49.34 Aligned_cols=16 Identities=38% Similarity=0.274 Sum_probs=13.8
Q ss_pred CCCCChHHHHHHHhCC
Q psy2519 63 VPNVDFSELIRLFLSQ 78 (622)
Q Consensus 63 ~sGaGKSTLl~~l~g~ 78 (622)
+||||||||++.|...
T Consensus 59 ~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 59 VPGVGKSTTIDALGSL 74 (323)
T ss_dssp CTTSCHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH
Confidence 4699999999999864
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=83.73 E-value=0.28 Score=44.74 Aligned_cols=33 Identities=18% Similarity=0.163 Sum_probs=21.0
Q ss_pred CCCChHHHHHHHhCCCCCCCceeeEEEECCEecC
Q psy2519 64 PNVDFSELIRLFLSQVIDDCIIDGDIRVNGKPVE 97 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~~~~~~~G~I~~~G~~~~ 97 (622)
|||||||+-+.|.-.+.... ..-.+.++|..+.
T Consensus 33 sGsGKTTia~~L~~~l~~~~-~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 33 SASGKSTLAVELEHQLVRDR-RVHAYRLDGDNIR 65 (208)
T ss_dssp TTSSHHHHHHHHHHHHHHHH-CCCEEEECHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHhc-CceEEEEcchHHH
Confidence 69999999999985542100 0234667776543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.50 E-value=0.17 Score=46.53 Aligned_cols=17 Identities=6% Similarity=0.004 Sum_probs=15.1
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
.||||||+++.|+..+.
T Consensus 11 dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 11 IAAGKSTFVNILKQLCE 27 (241)
T ss_dssp TTSSHHHHHTTTGGGCT
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 48999999999998775
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.49 E-value=0.24 Score=43.13 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=17.3
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+-.
T Consensus 7 Ki~lvG~~-----~vGKTsLi~~l~~~~ 29 (171)
T d2ew1a1 7 KIVLIGNA-----GVGKTCLVRRFTQGL 29 (171)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHSS
T ss_pred EEEEECCC-----CcCHHHHHHHHHhCC
Confidence 35666664 799999999988643
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.46 E-value=0.25 Score=43.52 Aligned_cols=21 Identities=10% Similarity=0.059 Sum_probs=16.2
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|+ |||||||+-+.|+-.
T Consensus 5 Ivl~G~-----pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGP-----PGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECC-----TTSSHHHHHHHHHHH
T ss_pred EEEECC-----CCCCHHHHHHHHHHH
Confidence 345555 489999999999854
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.42 E-value=0.24 Score=42.85 Aligned_cols=22 Identities=18% Similarity=0.119 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 6 i~viG~~-----~vGKTsli~~l~~~~ 27 (166)
T d1ctqa_ 6 LVVVGAG-----GVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CCCHHHHHHHHHhCC
Confidence 4566554 899999999887643
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=83.15 E-value=0.32 Score=43.55 Aligned_cols=16 Identities=6% Similarity=-0.004 Sum_probs=14.0
Q ss_pred CCChHHHHHHHhCCCC
Q psy2519 65 NVDFSELIRLFLSQVI 80 (622)
Q Consensus 65 GaGKSTLl~~l~g~~~ 80 (622)
++|||||++.|+|...
T Consensus 15 d~GKSTL~~~L~g~~~ 30 (195)
T d1kk1a3 15 DHGKTTLTKALTGVWT 30 (195)
T ss_dssp TSSHHHHHHHHHTCCC
T ss_pred CCcHHHHHHHHHhhhh
Confidence 6999999999998653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=83.11 E-value=0.24 Score=47.79 Aligned_cols=23 Identities=35% Similarity=0.244 Sum_probs=18.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++.|+|.| .||||||+++|++-.
T Consensus 12 kiGivG~P-----n~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 12 KTGIVGMP-----NVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEEECS-----SSSHHHHHHHHHHST
T ss_pred EEEEECCC-----CCCHHHHHHHHHCCC
Confidence 35677776 499999999999753
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=83.09 E-value=0.26 Score=42.65 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=16.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 5 i~vvG~~-----~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDS-----GVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CcCHHHHHHHHHhCC
Confidence 4566654 799999999877643
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.04 E-value=0.26 Score=42.48 Aligned_cols=22 Identities=27% Similarity=0.304 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 3 v~vvG~~-----~vGKTsLi~r~~~~~ 24 (164)
T d1yzqa1 3 LVFLGEQ-----SVGKTSLITRFMYDS 24 (164)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CcCHHHHHHHHHhCC
Confidence 4566554 899999999887543
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=83.03 E-value=0.24 Score=43.43 Aligned_cols=21 Identities=24% Similarity=0.311 Sum_probs=15.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+-
T Consensus 7 i~vvG~~-----~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDS-----GVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESST-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4566554 79999999987653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.87 E-value=0.25 Score=42.69 Aligned_cols=20 Identities=20% Similarity=0.265 Sum_probs=15.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
++++|.+ |+|||||++-+.+
T Consensus 5 v~liG~~-----~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNG-----AVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECST-----TSSHHHHHHHHHH
T ss_pred EEEECCC-----CcCHHHHHHHHHh
Confidence 4556554 8999999997764
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.71 E-value=0.3 Score=42.41 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=15.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|. +|+|||||++-+.+-
T Consensus 5 i~viG~-----~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGA-----GGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECC-----TTSSHHHHHHHHHTC
T ss_pred EEEECC-----CCCCHHHHHHHHHhC
Confidence 455554 489999999987764
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.62 E-value=0.34 Score=42.93 Aligned_cols=16 Identities=6% Similarity=0.112 Sum_probs=13.4
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+|||||++.|....
T Consensus 12 sg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 12 HGVGRRHIKNTLITKH 27 (178)
T ss_dssp TTSSHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhC
Confidence 5999999999988543
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=82.57 E-value=0.31 Score=42.75 Aligned_cols=21 Identities=5% Similarity=0.072 Sum_probs=16.2
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|++ ||||||.-+.|+-.
T Consensus 3 I~i~G~p-----GSGKsT~~~~La~~ 23 (179)
T d1e4va1 3 IILLGAP-----VAGKGTQAQFIMEK 23 (179)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHH
T ss_pred EEEECCC-----CCCHHHHHHHHHHH
Confidence 3456664 89999999999843
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.52 E-value=0.29 Score=43.15 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 8 i~ivG~~-----~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDS-----GVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCT-----TSSHHHHHHHHHCSC
T ss_pred EEEECCC-----CcCHHHHHHHHhcCC
Confidence 4556554 899999999988643
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.45 E-value=0.31 Score=43.43 Aligned_cols=16 Identities=6% Similarity=0.096 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||+-+.|+-.+
T Consensus 17 pGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 17 PGAGKGTQCEKLVKDY 32 (196)
T ss_dssp TTSSHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999998654
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.45 E-value=0.3 Score=43.46 Aligned_cols=17 Identities=12% Similarity=0.202 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
||||||||++.|....+
T Consensus 10 sG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 10 SGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCCHHHHHHHHHHhCC
Confidence 58999999999976543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.43 E-value=0.28 Score=42.67 Aligned_cols=22 Identities=23% Similarity=0.247 Sum_probs=16.2
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++-+.+-
T Consensus 7 Ki~lvG~~-----~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGG-----GVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECT-----TSSHHHHHHHHHHS
T ss_pred EEEEECCC-----CCCHHHHHHHHHhC
Confidence 35666554 89999999977653
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.41 E-value=0.28 Score=42.41 Aligned_cols=22 Identities=32% Similarity=0.223 Sum_probs=16.7
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.. |+|||||++.+.+.
T Consensus 6 Kv~liG~~-----~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 6 KIAILGYR-----SVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEST-----TSSHHHHHHHHHHS
T ss_pred EEEEECCC-----CcCHHHHHHHHHhC
Confidence 55666654 89999999997653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=82.34 E-value=0.28 Score=43.10 Aligned_cols=22 Identities=9% Similarity=0.073 Sum_probs=16.5
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
+++++|.+ |+|||||++.+.+-
T Consensus 19 KI~lvG~~-----~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 19 RILILGLD-----GAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEET-----TSSHHHHHHHTCCS
T ss_pred EEEEECCC-----CCCHHHHHHHHhcC
Confidence 45566665 79999999988643
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=82.18 E-value=0.32 Score=49.13 Aligned_cols=23 Identities=9% Similarity=-0.081 Sum_probs=18.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|.+ |+|||||+|.|.|...
T Consensus 59 Iai~G~~-----n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGET-----GSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECT-----TSSHHHHHHHHHTCCT
T ss_pred EEEECCC-----CCCHHHHHHHHhCCCc
Confidence 5666665 7999999999999653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=81.93 E-value=0.28 Score=45.25 Aligned_cols=22 Identities=9% Similarity=-0.004 Sum_probs=17.8
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
.++++|.+ +||||||++.|.+.
T Consensus 7 ~IaIiGh~-----d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHV-----DHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECST-----TSSHHHHHHHHHHH
T ss_pred EEEEEeCC-----CccHHHHHHHHHhh
Confidence 46777765 69999999999874
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.79 E-value=0.4 Score=41.78 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=16.8
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+..
T Consensus 6 v~lvG~~-----~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQ-----GVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCT-----TSSHHHHHHHHHCCC
T ss_pred EEEECCC-----CcCHHHHHHHHHhCc
Confidence 4555543 899999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.72 E-value=0.34 Score=42.07 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=16.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQVI 80 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~~ 80 (622)
++++|. +|+|||||++.+.+...
T Consensus 4 i~lvG~-----~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGA-----PGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECC-----TTSSHHHHHHHHHTC--
T ss_pred EEEECC-----CCcCHHHHHHHHhCCcc
Confidence 455554 48999999999988643
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.63 E-value=0.29 Score=42.85 Aligned_cols=22 Identities=23% Similarity=0.265 Sum_probs=16.1
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 10 i~vvG~~-----~vGKTsli~~l~~~~ 31 (177)
T d1x3sa1 10 ILIIGES-----GVGKSSLLLRFTDDT 31 (177)
T ss_dssp EEEECST-----TSSHHHHHHHHHHSC
T ss_pred EEEECCC-----CcCHHHHHHHHHhCC
Confidence 4555544 899999999887643
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.57 E-value=0.26 Score=45.01 Aligned_cols=41 Identities=15% Similarity=0.205 Sum_probs=26.1
Q ss_pred CCeEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEeccCc
Q psy2519 190 PALLLCDEPTTGLDSFSASKLIRMMRELTSQRKKTVLCTIHQPS 233 (622)
Q Consensus 190 P~lLlLDEPTsgLD~~~~~~i~~~l~~l~~~~g~tvi~~tH~~~ 233 (622)
.+++++||.- ++....+..+...+.+.. ....+++++++..
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~--~~~~~i~~~~~~~ 142 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYS--NSTRFAFACNQSN 142 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTT--TTEEEEEEESCGG
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccc--cceeeeeccCchh
Confidence 6799999965 455555666666665543 2456677777653
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.52 E-value=0.39 Score=43.33 Aligned_cols=17 Identities=0% Similarity=-0.038 Sum_probs=14.4
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
.||||||+.+.|.-.+.
T Consensus 11 dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 11 EGAGKTTARNVVVETLE 27 (210)
T ss_dssp TTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999987654
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.45 E-value=0.37 Score=44.27 Aligned_cols=17 Identities=18% Similarity=0.165 Sum_probs=14.5
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
-||||||+++.|+-.+.
T Consensus 11 ~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 11 IAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp TTSSHHHHHHHHHHHCT
T ss_pred CCCcHHHHHHHHHHHHh
Confidence 38999999999997654
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=81.44 E-value=0.33 Score=42.29 Aligned_cols=23 Identities=4% Similarity=0.007 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+-.
T Consensus 14 kIvlvG~~-----~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLD-----AAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEET-----TSSHHHHHHHTTCCC
T ss_pred EEEEECCC-----CCCHHHHHHHHhcCC
Confidence 45566665 799999999997644
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=81.37 E-value=0.34 Score=42.53 Aligned_cols=22 Identities=9% Similarity=0.090 Sum_probs=16.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|+ |||||||+-+.|+-..
T Consensus 3 I~i~G~-----pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGP-----PGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECC-----TTSSHHHHHHHHHHHH
T ss_pred EEEECC-----CCCCHHHHHHHHHHHH
Confidence 345555 4899999999998543
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.33 E-value=0.31 Score=42.16 Aligned_cols=23 Identities=30% Similarity=0.304 Sum_probs=16.9
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
+++++|.+ |+|||||++.+.+..
T Consensus 5 Ki~lvG~~-----~vGKTsLi~r~~~~~ 27 (167)
T d1kaoa_ 5 KVVVLGSG-----GVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHSC
T ss_pred EEEEECCC-----CcCHHHHHHHHHhCC
Confidence 34555544 899999999987654
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.16 E-value=0.31 Score=42.10 Aligned_cols=21 Identities=24% Similarity=0.226 Sum_probs=15.9
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+.
T Consensus 7 ivlvG~~-----~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDM-----GVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECST-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4566554 89999999887754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=81.15 E-value=0.31 Score=42.93 Aligned_cols=21 Identities=19% Similarity=0.384 Sum_probs=15.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+-
T Consensus 5 v~vvG~~-----~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDS-----GVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4555554 89999999987753
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.95 E-value=0.32 Score=41.81 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=15.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.. |+|||||++.+.+-
T Consensus 5 v~liG~~-----~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDS-----NVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4455554 89999999988753
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.93 E-value=0.34 Score=42.16 Aligned_cols=20 Identities=15% Similarity=0.218 Sum_probs=15.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLS 77 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g 77 (622)
++++|.+ |+|||||++.+.+
T Consensus 8 I~lvG~~-----~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNA-----GTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEST-----TSSHHHHHHHHHH
T ss_pred EEEECCC-----CcCHHHHHHHHHh
Confidence 4566654 8999999998764
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.90 E-value=0.8 Score=40.06 Aligned_cols=22 Identities=27% Similarity=0.206 Sum_probs=15.6
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|. +|+|||||++.+.+-.
T Consensus 8 i~vlG~-----~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 8 LGVLGD-----ARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEECC-----TTTTHHHHHHHHHHSC
T ss_pred EEEECC-----CCCCHHHHHHHHHhCC
Confidence 445554 3899999999776543
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=80.84 E-value=0.36 Score=42.98 Aligned_cols=16 Identities=6% Similarity=0.067 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||||||||.+.|+..+
T Consensus 11 pgsGKSTla~~L~~~l 26 (213)
T d1bifa1 11 PARGKTYISKKLTRYL 26 (213)
T ss_dssp TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5899999999999654
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=80.77 E-value=0.35 Score=44.52 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=12.7
Q ss_pred CCCChHHHHHHHhCC
Q psy2519 64 PNVDFSELIRLFLSQ 78 (622)
Q Consensus 64 sGaGKSTLl~~l~g~ 78 (622)
-||||||||+-+...
T Consensus 12 LGaGKTTll~~lL~~ 26 (222)
T d1nija1 12 LGAGKTTLLRHILNE 26 (222)
T ss_dssp SSSSCHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHhc
Confidence 389999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.59 E-value=0.34 Score=41.94 Aligned_cols=21 Identities=19% Similarity=0.272 Sum_probs=15.7
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++-+.+-
T Consensus 7 i~lvG~~-----~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 7 VCLLGDT-----GVGKSSIMWRFVED 27 (167)
T ss_dssp EEEECCT-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4555543 89999999988753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.46 E-value=0.33 Score=42.31 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=15.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+-
T Consensus 6 ivvvG~~-----~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDT-----GVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESST-----TSSHHHHHHHHHHS
T ss_pred EEEECCC-----CcCHHHHHHHHhcC
Confidence 4555554 89999999987654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.39 E-value=0.36 Score=43.03 Aligned_cols=22 Identities=18% Similarity=0.170 Sum_probs=16.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
++++|.+ |+|||||++.+.+-.
T Consensus 9 ivvvG~~-----~vGKTsli~~l~~~~ 30 (194)
T d2bcgy1 9 LLLIGNS-----GVGKSCLLLRFSDDT 30 (194)
T ss_dssp EEEEEST-----TSSHHHHHHHHHHCC
T ss_pred EEEECCC-----CcCHHHHHHHHhhCC
Confidence 5666664 799999999877543
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.38 E-value=0.43 Score=42.67 Aligned_cols=17 Identities=6% Similarity=-0.007 Sum_probs=14.6
Q ss_pred CCCChHHHHHHHhCCCC
Q psy2519 64 PNVDFSELIRLFLSQVI 80 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~~ 80 (622)
-||||||+++.|...+.
T Consensus 9 dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 9 DGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp TTSSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH
Confidence 48999999999997664
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=80.27 E-value=0.36 Score=41.77 Aligned_cols=21 Identities=19% Similarity=0.222 Sum_probs=15.5
Q ss_pred eEEEecCCcCCCCCChHHHHHHHhCC
Q psy2519 53 TVILFKNNEEVPNVDFSELIRLFLSQ 78 (622)
Q Consensus 53 ~~~l~~~~~~~sGaGKSTLl~~l~g~ 78 (622)
++++|.+ |+|||||++.+.+-
T Consensus 6 ivlvG~~-----~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 6 VVLLGEG-----CVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEECCT-----TSCHHHHHHHHHHC
T ss_pred EEEECCC-----CcCHHHHHHHHHhC
Confidence 4555543 89999999987653
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=80.16 E-value=0.46 Score=43.81 Aligned_cols=16 Identities=13% Similarity=0.304 Sum_probs=14.1
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+||||+.++|+...
T Consensus 61 pG~GKTt~a~~la~~~ 76 (253)
T d1sxja2 61 PGIGKTTAAHLVAQEL 76 (253)
T ss_dssp TTSSHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH
Confidence 5999999999999754
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=80.15 E-value=0.43 Score=43.82 Aligned_cols=16 Identities=13% Similarity=0.349 Sum_probs=14.0
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
||+||||+.+++++..
T Consensus 44 pG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 44 PGLGKTTLAHVIAHEL 59 (239)
T ss_dssp TTSCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999999754
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=80.14 E-value=0.39 Score=42.84 Aligned_cols=23 Identities=4% Similarity=-0.013 Sum_probs=17.4
Q ss_pred ceEEEecCCcCCCCCChHHHHHHHhCCC
Q psy2519 52 KTVILFKNNEEVPNVDFSELIRLFLSQV 79 (622)
Q Consensus 52 ~~~~l~~~~~~~sGaGKSTLl~~l~g~~ 79 (622)
.++++|++ ||||||+-+.|+-..
T Consensus 8 rIiliG~P-----GSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAP-----GSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCT-----TSSHHHHHHHHHHHB
T ss_pred eEEEECCC-----CCCHHHHHHHHHHHH
Confidence 44556554 899999999999643
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=80.13 E-value=0.32 Score=44.08 Aligned_cols=16 Identities=6% Similarity=0.138 Sum_probs=13.9
Q ss_pred CCCChHHHHHHHhCCC
Q psy2519 64 PNVDFSELIRLFLSQV 79 (622)
Q Consensus 64 sGaGKSTLl~~l~g~~ 79 (622)
|||||||.-+.|+-.+
T Consensus 12 ~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 12 ASSGKSTVAKIIAKDF 27 (223)
T ss_dssp SCSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh
Confidence 5899999999999654
|