Psyllid ID: psy2623

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------

MHLHRDNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT

cccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccEEEccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHcccccccEEEEEEEEEccccccccccccccccHHHHHHHHccccEEEEEEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcHHHHcccccccccEEEEEccccccccccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEHHHcccccccEEEEEEEEEcccccEEEEccccEEEEEcccccccccEEEccEEEEEEEEEEccEEEEEEEcccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHcccccEEEEEcEEccHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEEEccccccccccccccccccccHHHHHHHHccccccEEEcccEEEEEccEEEEEEEHHHHHHHHHcccccccccccHHHHHHHHcccccccccccccccccccccccEEccccccEEEEEcccccEEEEEccEEEEcccccccccccEEEEEEEEccccccEEEEccccccHHHHHHHHHHHHcccccc

cccccccccccHHHHHHHHHHHHccccccHHHHHEEEcccccccEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEHHHHHccccccccEEEEEEEEEccccccHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEEEcccccccccEcccccHHccccccccccccccHcccccccccHHHHEEEEcccccccEEEcccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEHHHHccccccccEEEEEEEEEEcccccEEEEccccEEEEEccccccccccccccEEEEEEEEEEccEEEEEEccccccccHHHHHHHHcccccccccccccHHHHHHHHHHHHHccccEEEEEEEcccccHHHHHHHHHHHHHHHccccccccEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccEEEEEccccccccccccccccccccHHHHHHHHHHHcccEEEEccccEEEEcccEEEEEHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccccEEccHHHHEEEcccccEEEEEcccccEEEEEccEEEEccccccccccEEEEEEEcccccccEEEEEEcccccEEEHHHHHHHHHcccccc

mhlhrdnpsctydliefttneccrteinsEEQIFSVIsafdipqfdydpdlkkfklvdkkrklcadsDAKSKLFRERYNIIRQRTLRHSLfnninpnadsvKLDWVEYLMSLTNVNHKTVVLGMISQLKEnittsgllgkhqsphlnLLCLIWVKIFICTLIFIFIILIISLCsfsfnssqvptdvqgpvtAFETYhnlvplilhpvipvsnreqnNIMNWLKLSSECCRTEINSEEQIFSVIsafdipqfdydpdlkkfklvdkkrklcadsDAKSKLFRERYNIIRQRTLRHSLfnninpnadsvKLDWVEYLMSLTNVNHKTVVLGMISQLkenryfledptgivqldlsqtsyhpglytenCIVLVEghykdqilhvdalgfpppeasknsrlyfgnqniwggpspvslKSVNRMTKMEKNNENAMIVILSdvhldndkVRNNLCEFitsefqgfvpnstmatnpcrvqycSQEILVVREELLSKMCRNcikfpeegdiskhvsknngekdiIFLIVPKIYvegtvtskvlspalpkfitsefqgfvpnstmatnpcrvqycSQEILVVREELLSKMCRNcikfpeegdisKHFVRTLVSQgtlvslplnlcpvywsqygalslyplpdlvilgdqlnaytiqntdcifinpvfhnTVRNAFEVEKEHHAVSSGVWLiqssfkpeviYVGELITWLLGHHYVT

mhlhrdnpsctydlIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKkfklvdkkrklcadsdaksklfrerYNIIRqrtlrhslfnninpnadSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKkfklvdkkrklcadsdaksklfrerYNIIRqrtlrhslfnninpnadSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKfpeegdiskhvsknngekdIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKfpeegdiskHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT

MHLHRDNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYdpdlkkfklvdkkrklCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKifictlififiiliislcsfsfnssQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYdpdlkkfklvdkkrklCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT

*********CTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFP********RLYFGNQNIWGG********************NAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYV*

**********TYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLK*****************KSKLFRERYNIIRQRTLRHS*****************************TVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGP************************************************QIFSVISAFDIPQFDYDPDLKKFK***********SDAKSKLFRERYNIIRQRTLRHSLF****************Y***LTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV*************NNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQY**********ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYV*

********SCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT

*******PSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSN*******************EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		707	2.2.26 [Sep-21-2011]
Q5ZKQ6		527	DNA polymerase epsilon su	yes	N/A	0.582	0.781	0.420	2e-92
O54956		527	DNA polymerase epsilon su	yes	N/A	0.599	0.804	0.393	4e-90
A7YWS7		527	DNA polymerase epsilon su	yes	N/A	0.582	0.781	0.4	5e-90
P56282		527	DNA polymerase epsilon su	yes	N/A	0.582	0.781	0.402	2e-89
Q54Y85		676	DNA polymerase epsilon su	yes	N/A	0.568	0.594	0.301	2e-47
Q19196		534	Probable DNA polymerase e	yes	N/A	0.574	0.760	0.295	7e-45
P0CN24		541	DNA polymerase epsilon su	yes	N/A	0.574	0.750	0.294	1e-43
P0CN25		541	DNA polymerase epsilon su	N/A	N/A	0.574	0.750	0.294	1e-43
O94263		594	DNA polymerase epsilon su	yes	N/A	0.579	0.690	0.252	3e-28
Q6FSK8		719	DNA polymerase epsilon su	yes	N/A	0.584	0.574	0.236	1e-19

>sp\|Q5ZKQ6\|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2 SV=1	Back alignment and function desciption

 Score =  340 bits (872), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 187/445 (42%), Positives = 272/445 (61%), Gaps = 33/445 (7%)

Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
           EC +    + + +F++I AFDIP++ Y+PD K+F  +         L   +  K++LFRE
Sbjct: 73  ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132

Query: 283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
           RY+I++QRT RH LF      I+P  N    +L  VE L+  T    + +VLGMI+QLKE
Sbjct: 133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192

Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
            +YFLEDPTG+VQLDLS+  +H GLYTE+C VL EG Y+D++ HV+A GFPP E S  +R
Sbjct: 193 GKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252

Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
            ++GN N +GGPS  S+K+  ++ ++E  NE+AM V LSDV LD  +V     E + + F
Sbjct: 253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEV----LEKLHTMF 308

Query: 457 QGF--VPNST--MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
            G+   P +      N     Y   +I  ++  L +     C ++P     S H S    
Sbjct: 309 SGYSSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR-- 360

Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
               +F+  P+    G+V  +   P L + IT EF+  VP S   TNPCRVQYC+QEI++
Sbjct: 361 ---FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIII 414

Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
            RE+L++KMCRNC++FP    DI  HFV+T++SQG L  LPL + PVYW+   AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474

Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
           PD++++ D+ + +T+ NTDC+ INP
Sbjct: 475 PDMLVIADKYDPFTVTNTDCLCINP 499

Participates in DNA repair and in chromosomal DNA replication.
Gallus gallus (taxid: 9031)
EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7

>sp\|O54956\|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2	Back alignment and function description

>sp\|A7YWS7\|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1	Back alignment and function description

>sp\|P56282\|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2	Back alignment and function description

>sp\|Q54Y85\|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum GN=pole2 PE=3 SV=1	Back alignment and function description

>sp\|Q19196\|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans GN=pole-2 PE=3 SV=2	Back alignment and function description

>sp\|P0CN24\|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain JEC21 / ATCC MYA-565) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|P0CN25\|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var. neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1	Back alignment and function description

>sp\|O94263\|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1	Back alignment and function description

>sp\|Q6FSK8\|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=DPB2 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
260790203		541	hypothetical protein BRAFLDRAFT_114751 [	0.603	0.789	0.417	4e-95
291225848		521	PREDICTED: DNA-directed DNA polymerase e	0.581	0.788	0.415	6e-91
57529888		527	DNA polymerase epsilon subunit 2 [Gallus	0.582	0.781	0.420	2e-90
355712641		519	polymerase , epsilon 2 [Mustela putorius	0.582	0.793	0.408	9e-90
402876079		502	PREDICTED: DNA polymerase epsilon subuni	0.584	0.822	0.410	1e-89
338718008		509	PREDICTED: DNA polymerase epsilon subuni	0.582	0.809	0.408	1e-89
403277942		505	PREDICTED: DNA polymerase epsilon subuni	0.584	0.817	0.405	2e-89
410962206		527	PREDICTED: DNA polymerase epsilon subuni	0.582	0.781	0.402	7e-89
297297779		549	PREDICTED: DNA polymerase epsilon subuni	0.582	0.750	0.406	8e-89
326921269		504	PREDICTED: DNA polymerase epsilon subuni	0.582	0.817	0.415	1e-88

>gi\|260790203\|ref\|XP_002590133.1\| hypothetical protein BRAFLDRAFT_114751 [Branchiostoma floridae] gi\|229275321\|gb\|EEN46144.1\| hypothetical protein BRAFLDRAFT_114751 [Branchiostoma floridae]	Back alignment and taxonomy information

 Score =  355 bits (912), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 197/472 (41%), Positives = 276/472 (58%), Gaps = 45/472 (9%)

Query: 215 QNNIMNWLKLSS---ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 271
           ++++++ L L +   +C +      +Q+FSVI AFDIP+FDY+ + KKF      R L  
Sbjct: 57  ESSMIDRLTLEAAVNDCVQGGEEDSDQVFSVIDAFDIPKFDYNSERKKFMPSTAPRSLHG 116

Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFN----NINP--NADSVKLDWVEYLMSLTNVNHKT 325
            +  K++LFR+RY ++ QRT RH LF       NP       +L  VEYL+       + 
Sbjct: 117 QATDKAQLFRDRYTVLFQRTSRHELFTPPVMGANPVHQTKKFQLRPVEYLLGSVAKLGEI 176

Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQT----------------SYHPGLYTENCIVL 369
           +VLGM++QLK   Y+LEDPTG V++DLSQT                ++H GL+TENC VL
Sbjct: 177 IVLGMVTQLKPGSYYLEDPTGAVKMDLSQTISFSLTRRAISLTALYNFHNGLFTENCFVL 236

Query: 370 VEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENA 429
            EG Y+DQ+ HV A GFPPPE +K +R YFGN N +GGPS    K+  ++  +E+ NE+A
Sbjct: 237 AEGWYEDQVFHVTAFGFPPPEPAKTTRAYFGNINFFGGPSATCAKASTKLRVIERENEDA 296

Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS-TMATNPCRVQYCSQEILVVREELLS 488
           MIV LSDV LD+ KV   L    T  +    P +  +  N     + S  I  +RE    
Sbjct: 297 MIVFLSDVWLDDSKVMEKLRVLFTG-YSEICPTAFVLCGNFTSSPFGSSHIKTLRESF-- 353

Query: 489 KMCRNCI-KFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL-SPALPKFITSE 546
           +   N I +FP   + S+            F+ VP     G     VL  P +P  +T E
Sbjct: 354 RGLGNLIAQFPSLVESSR------------FIFVPGSQDPGP--GNVLPRPNIPDCVTEE 399

Query: 547 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQG 606
            +  VP +T  TNPCR+QYC+QEI+V RE++++KMCRNC+KFP + DIS HFV+TL SQG
Sbjct: 400 LRRKVPTATFTTNPCRIQYCTQEIVVFREDMVTKMCRNCVKFPSDRDISTHFVKTLASQG 459

Query: 607 TLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVF 658
            L  LPL++ PVYWS   AL +YPLPD+V++ D+ +AY+  + DC F NPV+
Sbjct: 460 HLCPLPLHVEPVYWSHDHALRVYPLPDVVVVADKFDAYSNTHVDCTFANPVY 511

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Order:

Class:

Phylum: Chordata

Superkingdom: Eukaryota

>gi\|291225848\|ref\|XP_002732910.1\| PREDICTED: DNA-directed DNA polymerase epsilon 2-like [Saccoglossus kowalevskii]	Back alignment and taxonomy information

>gi\|57529888\|ref\|NP_001006493.1\| DNA polymerase epsilon subunit 2 [Gallus gallus] gi\|73919257\|sp\|Q5ZKQ6.1\|DPOE2_CHICK RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA polymerase II subunit 2; AltName: Full=DNA polymerase epsilon subunit B gi\|53130716\|emb\|CAG31687.1\| hypothetical protein RCJMB04_9k18 [Gallus gallus]	Back alignment and taxonomy information

>gi\|355712641\|gb\|AES04416.1\| polymerase , epsilon 2 [Mustela putorius furo]	Back alignment and taxonomy information

>gi\|402876079\|ref\|XP_003901808.1\| PREDICTED: DNA polymerase epsilon subunit 2 [Papio anubis]	Back alignment and taxonomy information

>gi\|338718008\|ref\|XP_001496330.3\| PREDICTED: DNA polymerase epsilon subunit 2-like [Equus caballus]	Back alignment and taxonomy information

>gi\|403277942\|ref\|XP_003930601.1\| PREDICTED: DNA polymerase epsilon subunit 2 [Saimiri boliviensis boliviensis]	Back alignment and taxonomy information

>gi\|410962206\|ref\|XP_003987665.1\| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Felis catus]	Back alignment and taxonomy information

>gi\|297297779\|ref\|XP_001095940.2\| PREDICTED: DNA polymerase epsilon subunit 2 [Macaca mulatta]	Back alignment and taxonomy information

>gi\|326921269\|ref\|XP_003206884.1\| PREDICTED: DNA polymerase epsilon subunit 2-like, partial [Meleagris gallopavo]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		707
UNIPROTKB\|Q5ZKQ6		527	POLE2 "DNA polymerase epsilon	0.586	0.787	0.409	5.8e-82
UNIPROTKB\|F1MKI8		527	POLE2 "DNA polymerase epsilon	0.586	0.787	0.395	4.1e-81
UNIPROTKB\|E1C2T8		527	POLE2 "DNA polymerase epsilon	0.586	0.787	0.407	6.6e-81
UNIPROTKB\|A7YWS7		527	POLE2 "DNA polymerase epsilon	0.586	0.787	0.395	8.5e-81
UNIPROTKB\|F1SHZ5		527	POLE2 "Uncharacterized protein	0.582	0.781	0.4	1.1e-80
MGI\|MGI:1197514		527	Pole2 "polymerase (DNA directe	0.644	0.865	0.373	1.4e-80
RGD\|1311962		527	Pole2 "polymerase (DNA directe	0.644	0.865	0.381	2.9e-80
UNIPROTKB\|P56282		527	POLE2 "DNA polymerase epsilon	0.586	0.787	0.400	4.7e-80
UNIPROTKB\|E2RCT9		527	DNAAF2 "Uncharacterized protei	0.582	0.781	0.397	9.7e-80
UNIPROTKB\|J9PBE8		547	DNAAF2 "Uncharacterized protei	0.582	0.753	0.397	9.7e-80

UNIPROTKB\|Q5ZKQ6 POLE2 "DNA polymerase epsilon subunit 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

 Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
 Identities = 181/442 (40%), Positives = 262/442 (59%)

Query:   227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
             EC +    + + +F++I AFDIP++ Y                  +    +  K++LFRE
Sbjct:    73 ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132

Query:   283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
             RY+I++QRT RH LF      I+P  N    +L  VE L+  T    + +VLGMI+QLKE
Sbjct:   133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192

Query:   337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
              +YFLEDPTG+VQLDLS+  +H GLYTE+C VL EG Y+D++ HV+A GFPP E S  +R
Sbjct:   193 GKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252

Query:   397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
              ++GN N +GGPS  S+K+  ++ ++E  NE+AM V LSDV LD  +V   L   + S +
Sbjct:   253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEVLEKL-HTMFSGY 311

Query:   457 QGFVPNSTM-ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
                 P       N     Y   +I  ++  L +     C ++P     S H S       
Sbjct:   312 SSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR----- 360

Query:   516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
              +F+  P+    G+V  +   P L + IT EF+  VP S   TNPCRVQYC+QEI++ RE
Sbjct:   361 FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFRE 417

Query:   576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
             +L++KMCRNC++FP    DI  HFV+T++SQG L  LPL + PVYW+   AL +YP+PD+
Sbjct:   418 DLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPVPDM 477

Query:   635 VILGDQLNAYTIQNTDCIFINP 656
             +++ D+ + +T+ NTDC+ INP
Sbjct:   478 LVIADKYDPFTVTNTDCLCINP 499

GO:0006261 "DNA-dependent DNA replication" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA

GO:0008622 "epsilon DNA polymerase complex" evidence=IEA

GO:0006281 "DNA repair" evidence=TAS

UNIPROTKB\|F1MKI8 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|E1C2T8 POLE2 "DNA polymerase epsilon subunit 2" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|A7YWS7 POLE2 "DNA polymerase epsilon subunit 2" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SHZ5 POLE2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1197514 Pole2 "polymerase (DNA directed), epsilon 2 (p59 subunit)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

RGD\|1311962 Pole2 "polymerase (DNA directed), epsilon 2, accessory subunit" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|P56282 POLE2 "DNA polymerase epsilon subunit 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RCT9 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|J9PBE8 DNAAF2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.7.7	LOW CONFIDENCE prediction!
4th Layer	2.7.7.7	0.737

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Alignment Graph	Length	Definition	E-value
Query		707
pfam04042		189	pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil	4e-21
pfam04042		189	pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsil	2e-08

>gnl\|CDD\|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B	Back alignment and domain information

 Score = 91.2 bits (227), Expect = 4e-21
 Identities = 30/106 (28%), Positives = 49/106 (46%), Gaps = 2/106 (1%)

Query: 537 PALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 596
           P  P+ +  + + +  +    TNPCR      EI+V   + +  + R  +KF    +   
Sbjct: 80  PPFPRCLFPKSKKYN-SLQFVTNPCRFSINGVEIVVTSGDNVKDLLRYSLKFSSSEERLL 138

Query: 597 HFVRTLVSQGTLVSL-PLNLCPVYWSQYGALSLYPLPDLVILGDQL 641
             V T++ Q  L  L P  L P  + +     L PLPD+ I+GD+L
Sbjct: 139 RLVETILRQRHLYPLAPDTLGPYPYDKDDPFVLDPLPDVFIVGDKL 184

This family contains a number of DNA polymerase subunits. The B subunit of the DNA polymerase alpha plays an essential role at the initial stage of DNA replication in S. cerevisiae and is phosphorylated in a cell cycle-dependent manner. DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast. In addition, DNA polymerase epsilon may be involved in DNA repair and cell-cycle checkpoint control. The enzyme consists of at least four subunits in mammalian cells as well as in yeast. The largest subunit of DNA polymerase epsilon is responsible for polymerase epsilon is responsible for polymerase activity. In mouse, the DNA polymerase epsilon subunit B is the second largest subunit of the DNA polymerase. A part of the N-terminal was found to be responsible for the interaction with SAP18. Experimental evidence suggests that this subunit may recruit histone deacetylase to the replication fork to modify the chromatin structure. Length = 189

>gnl\|CDD\|217857 pfam04042, DNA_pol_E_B, DNA polymerase alpha/epsilon subunit B	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		707
KOG3818\|consensus		525		100.0
PTZ00235		291	DNA polymerase epsilon subunit B; Provisional	100.0
PRK04036		504	DNA polymerase II small subunit; Validated	100.0
KOG3818\|consensus		525		100.0
PF04042		209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	99.97
COG1311		481	HYS2 Archaeal DNA polymerase II, small subunit/DNA	99.92
KOG1625\|consensus		600		99.92
cd07386		243	MPP_DNA_pol_II_small_archeal_C archeal DNA polymer	99.91
PTZ00235		291	DNA polymerase epsilon subunit B; Provisional	99.79
COG5214		581	POL12 DNA polymerase alpha-primase complex, polyme	99.69
cd07387		257	MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2	99.62
KOG2732\|consensus		435		99.05
PRK04036		504	DNA polymerase II small subunit; Validated	98.64
PF04042		209	DNA_pol_E_B: DNA polymerase alpha/epsilon subunit	97.11
PRK09453		182	phosphodiesterase; Provisional	96.52
cd00841		155	MPP_YfcE Escherichia coli YfcE and related protein	96.01
cd07398		217	MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and relat	95.7
PRK05340		241	UDP-2,3-diacylglucosamine hydrolase; Provisional	95.67
COG0622		172	Predicted phosphoesterase [General function predic	95.23
TIGR01854		231	lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase.	93.8
PF12850		156	Metallophos_2: Calcineurin-like phosphoesterase su	93.76
cd07394		178	MPP_Vps29 Homo sapiens Vps29 and related proteins,	88.69
COG2908		237	Uncharacterized protein conserved in bacteria [Fun	87.87
PHA02546		340	47 endonuclease subunit; Provisional	85.53
cd07400		144	MPP_YydB Bacillus subtilis YydB and related protei	80.21

>KOG3818\|consensus	Back alignment and domain information

Probab=100.00  E-value=8e-116  Score=927.91  Aligned_cols=449  Identities=36%  Similarity=0.629  Sum_probs=415.7

Q ss_pred             CCCCCcCHHHHHHHHHHHhccCCCCccceeEEecCCCCCCCccCcccCceee-ccCCcccCCChHHHHHHHHHHHHHHHH
Q psy2623           5 RDNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKL-VDKKRKLCADSDAKSKLFRERYNIIRQ   83 (707)
Q Consensus         5 ~~~~~~~~~~~~~a~~ec~~~~~~d~~~~f~VI~AF~~Pr~~Yd~~rK~F~~-~~~~~sl~~~a~~k~~~fr~RY~li~q   83 (707)
                      -.+|+++++.+|+|+|||++++.+|+|+||+|||||++|||.||++||||+. .+.+++|++++++|++|||+||++++|
T Consensus        59 l~s~~~~r~~~~~avq~~~~sg~~~~e~~F~vidAf~~prF~Yn~~~kkFvl~~k~~~~l~~~~~~ks~m~~~Ry~i~~q  138 (525)
T KOG3818|consen   59 LNSPHEEREAIEAAVQECSSSGTQDAEKYFNVIDAFSLPRFDYNSDRKKFVLPNKPKPSLLADPSDKSDMFRQRYFIVKQ  138 (525)
T ss_pred             cCCchhhHHHHHHHHHHhhhcccccHHHHHhhcchhcCCccccCchheEEEecCCCCccccCChHHHHHHHHHHHHHHHH
Confidence            3689999999999999999999999999999999999999999999999997 566789999999999999999999999


Q ss_pred             HHhhccCCCCCCCCCCccccceeeeeccccccCCcEEEEeeeecccccccccCCCCcccccchhhhhhhhhhheehhhhh
Q psy2623          84 RTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIF  163 (707)
Q Consensus        84 R~lRne~F~~~~~~~~~~~l~~i~~l~~~~g~~g~~~vlGmL~q~~~~~~~~~l~g~~~~ed~~~~~~~~~~~~~~~~~~  163 (707)
                      |++|||+||+|..                                  |.      |+..                     
T Consensus       139 R~mR~e~Fq~pv~----------------------------------~s------~~~~---------------------  157 (525)
T KOG3818|consen  139 RTMRNELFQPPVS----------------------------------GS------GRCA---------------------  157 (525)
T ss_pred             HHHhhhccCCCcc----------------------------------CC------chhh---------------------
Confidence            9999999998720                                  00      2220                     


Q ss_pred             hhhhhhhhccccccCCCceeeccCCCccccceeeccccccccCCCCccccccccchhhhhhhhhhhcccccCCCCeEEEE
Q psy2623         164 IFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVI  243 (707)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~e~~~~eg~~~~~~f~Vi  243 (707)
                                                                                                      
T Consensus       158 --------------------------------------------------------------------------------  157 (525)
T KOG3818|consen  158 --------------------------------------------------------------------------------  157 (525)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cCCCCCCCcccccccceeeccccccccCCchhHHHHHHHHHHHHHHHhhhccccCCCCCCCCcccchHHHHhh-cccCCc
Q psy2623         244 SAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLM-SLTNVN  322 (707)
Q Consensus       244 ~Af~~P~~~y~~~rk~F~~~~~~~sl~g~a~sk~~lfr~Ry~~i~qrllR~~~F~~~~~~~~~~klt~I~~Ll-g~~~~~  322 (707)
                                                                                 +.+.+++++|++|| |+..  
T Consensus       158 -----------------------------------------------------------q~~~fklt~ienLL~t~~~--  176 (525)
T KOG3818|consen  158 -----------------------------------------------------------QLKKFKLTPIENLLSTRAL--  176 (525)
T ss_pred             -----------------------------------------------------------hccccceeEHHHhhccccc--
Confidence                                                                       11245677788888 4444  


Q ss_pred             ceEEEEEEeeeccCCcEEeecCCceEEEEeeccccCCCccCcCeEEEEEeEecCceEEEEeecCCCccCccccccccCcc
Q psy2623         323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQ  402 (707)
Q Consensus       323 ~~~vvLG~Lsq~~~G~~~LED~tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~s~~f~v~~i~~PP~E~r~~S~~~~gn~  402 (707)
                      +.++|||||+|..+|+||||||+|.|+||+++++++.|+|+||||||+||.|.+++|+|+++|+||.|+|+.|+.++||.
T Consensus       177 ~~~lvLGlLTq~k~G~~~lEDpsgsVqlDlsqa~fh~glf~egC~VL~EG~f~~~vf~V~~lg~PP~E~~~~tr~~~gN~  256 (525)
T KOG3818|consen  177 QSFLVLGLLTQLKEGKFHLEDPSGSVQLDLSQAKFHHGLFCEGCFVLVEGTFESGVFHVNELGFPPVERREVTRKELGNL  256 (525)
T ss_pred             cceeeeehhhhccCCcEEEeCCCCcEEEeecccccccceeccceEEEEeeeeecceEEEeeccCCCCCcchhHHHHhccC
Confidence            68888888888888888888888888888888889999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCCchhhhhhHHHhhhhcCCcceEEEEeCCCCCchhhchhhHHHhHhhhccccCCCCCC----CCCCCccccccc
Q psy2623         403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMA----TNPCRVQYCSQE  478 (707)
Q Consensus       403 D~fG~~~~~~~k~~~~L~~~e~~~~~~~fVfvSD~~Lds~~~~~~L~~~l~~lf~~~~~~~p~a----GNF~s~~y~sqe  478 (707)
                      |+|||.+....|.+++|++.|+..++++|||+||+|||+..+|++|++    +|+||.+.||.|    ||||+.++...+
T Consensus       257 n~~Gg~~~~~~k~sA~L~~lE~~~~d~~fVfLSdV~LD~~~vm~aL~k----ifqgy~~~pP~~iIlcG~FtS~p~~~~s  332 (525)
T KOG3818|consen  257 NWLGGDSKIAFKCSARLRSLEAENTDTSFVFLSDVFLDDKKVMEALRK----IFQGYKDAPPTAIILCGSFTSSPRQTSS  332 (525)
T ss_pred             cccCCcchhhhHHHHHHHHHHHhCcCceEEEEehhccccHHHHHHHHH----HHhhccCCCCeEEEEeccccccccccch
Confidence            999999999999999999999999999999999999999999999999    999999998865    999999999999


Q ss_pred             eEEeHHHHHHHhhhccCCCCCcCC-ccccccccCCcceeEEEEecCCCCCCCCCCcccCCCccHHHHHHhhccCCCeEEe
Q psy2623         479 ILVVREELLSKMCRNCIKFPEEGD-ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMA  557 (707)
Q Consensus       479 iv~~rd~f~~km~RN~i~fp~Lad-L~~~p~l~~~~s~~~fVfVPG~~Dp~~~~~~LPrpplP~~~~~~l~~~~~n~~f~  557 (707)
                      +..++|+|+           .||+ |+.++.+. ++|+  |||||||+|||. +++|||||||+.+++++.+.+|+++||
T Consensus       333 ~~~~k~~f~-----------~LA~~l~~~~~~~-ekT~--fIFVPGP~Dp~~-~~iLPr~piP~~~~~~i~kv~~~tvfa  397 (525)
T KOG3818|consen  333 SDQLKDGFR-----------WLAAQLTCFRKDY-EKTQ--FIFVPGPNDPWV-DNILPRPPIPSLFTKHISKVCKNTVFA  397 (525)
T ss_pred             HHHHHHHHH-----------HHHhhcccccccc-ccce--EEEecCCCCCCc-CccCCCCCchHHHHHHHHhhcCCceec
Confidence            999999999           9999 99999999 8899  999999999999 899999999999999999999999999


Q ss_pred             eCCcEEEECCEEEEEEehhHHHHhhhccccCCCC-CChhHHHHHHHhcCCCCCCCCCCCcccccCcccccccCCCCcEEE
Q psy2623         558 TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI  636 (707)
Q Consensus       558 SNPcRi~~~~qeIvifRdDl~~~l~r~~i~~p~~-~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w~~D~aL~L~PlPd~li  636 (707)
                      ||||||+|++||||||||||++|+|||++.+|.+ .++++|+|||||+||||+|+|..++||+|||||||+|||+||+||
T Consensus       398 sNPcRIqy~sQEIvVfR~DL~~kfcRn~l~Fp~~~~qipq~~vkTIL~QgHLsP~p~~~~PV~WD~D~aLsl~PlPdlmv  477 (525)
T KOG3818|consen  398 SNPCRIQYCSQEIVVFRDDLSGKFCRNSLNFPITVEQIPQHLVKTILDQGHLSPFPQHIRPVLWDFDHALSLYPLPDLMV  477 (525)
T ss_pred             cCCeeeEeecceEEEEhHhhhhHHhhccccCCCcHHHHHHHHHHHHhhccccCCCccccCccccCcccceEeccCcceEE
Confidence            9999999999999999999999999999999865 678999999999999999999999999999999999999999999


Q ss_pred             ecCCCC-CceeeeCCeEEEcCCCCcccccCeeEEEEEeccc
Q psy2623         637 LGDQLN-AYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVS  676 (707)
Q Consensus       637 L~D~~~-~f~~~y~gc~vvNPG~~sF~~~~~~f~~y~~~~~  676 (707)
                      +||+.. .|.++|.||.|+|||  ||.++.|+|.+|+|+..
T Consensus       478 l~Ds~~sf~~vt~~gC~v~NPG--SF~~s~~~f~vy~P~~k  516 (525)
T KOG3818|consen  478 LADSFSSFFDVTYAGCIVINPG--SFSRSNYTFKVYYPSQK  516 (525)
T ss_pred             eecccccccccccCCceeeCCC--cccccceeEEEEecccc
Confidence            999975 556799999999999  99999999999998743

>PTZ00235 DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>KOG3818\|consensus	Back alignment and domain information

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast	Back alignment and domain information

>COG1311 HYS2 Archaeal DNA polymerase II, small subunit/DNA polymerase delta, subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>KOG1625\|consensus	Back alignment and domain information

>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain	Back alignment and domain information

>PTZ00235 DNA polymerase epsilon subunit B; Provisional	Back alignment and domain information

>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]	Back alignment and domain information

>cd07387 MPP_PolD2_C PolD2 (DNA polymerase delta, subunit 2), C-terminal domain	Back alignment and domain information

>KOG2732\|consensus	Back alignment and domain information

>PRK04036 DNA polymerase II small subunit; Validated	Back alignment and domain information

>PF04042 DNA_pol_E_B: DNA polymerase alpha/epsilon subunit B; InterPro: IPR007185 DNA polymerase epsilon is essential for cell viability and chromosomal DNA replication in budding yeast	Back alignment and domain information

>PRK09453 phosphodiesterase; Provisional	Back alignment and domain information

>cd00841 MPP_YfcE Escherichia coli YfcE and related proteins, metallophosphatase domain	Back alignment and domain information

>cd07398 MPP_YbbF-LpxH Escherichia coli YbbF/LpxH and related proteins, metallophosphatase domain	Back alignment and domain information

>PRK05340 UDP-2,3-diacylglucosamine hydrolase; Provisional	Back alignment and domain information

>COG0622 Predicted phosphoesterase [General function prediction only]	Back alignment and domain information

>TIGR01854 lipid_A_lpxH UDP-2,3-diacylglucosamine hydrolase	Back alignment and domain information

>PF12850 Metallophos_2: Calcineurin-like phosphoesterase superfamily domain; InterPro: IPR024654 Domains in this entry are members of the calcineurin-like phosphoesterase domain superfamily []	Back alignment and domain information

>cd07394 MPP_Vps29 Homo sapiens Vps29 and related proteins, metallophosphatase domain	Back alignment and domain information

>COG2908 Uncharacterized protein conserved in bacteria [Function unknown]	Back alignment and domain information

>PHA02546 47 endonuclease subunit; Provisional	Back alignment and domain information

>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		707
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-11
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	1e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 64.5 bits (156), Expect = 9e-11
 Identities = 72/578 (12%), Positives = 157/578 (27%), Gaps = 172/578 (29%)

Query: 193 FET------YHNLVPLILHPVIPVSNREQNNIMNWLK--LSSECCRTEI----NSEEQIF 240
           FET      Y +++ +       V N +  ++ +  K  LS E     I    ++     
Sbjct: 9   FETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSILSKEEID-HIIMSKDAVSGTL 65

Query: 241 -----------SVISAF--DIPQFDY------------DPDLKKFKLVDKKRKLCADSDA 275
                       ++  F  ++ + +Y             P +     ++++ +L  D+  
Sbjct: 66  RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV 125

Query: 276 KSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGM----- 330
            +K    R     +  LR +L   + P         V             ++ G+     
Sbjct: 126 FAKYNVSRLQPYLK--LRQALLE-LRPA------KNV-------------LIDGVLGSGK 163

Query: 331 ----ISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGF 386
               +      +   +    I  L+L            N    V    +  +  +D    
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKN---------CNSPETVLEMLQKLLYQIDPNWT 214

Query: 387 PPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVR- 445
              + S N +L              S+++  R     K  EN ++ +L +V  +      
Sbjct: 215 SRSDHSSNIKL-----------RIHSIQAELRRLLKSKPYENCLL-VLLNVQ-NAKAWNA 261

Query: 446 -NNLCE-FITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI 503
            N  C+  +T+ F+  V +   A     +      + +  +E+ S +    +    + D+
Sbjct: 262 FNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLTPDEVKS-LLLKYLDCRPQ-DL 318

Query: 504 SKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRV 563
            + V   N                         P     I    +               
Sbjct: 319 PREVLTTN-------------------------PRRLSIIAESIRDG---------LATW 344

Query: 564 QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQ- 622
                    V  + L+ +  + +   E  +  K F R  V   +   +P  L  + W   
Sbjct: 345 DNWKH----VNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDV 399

Query: 623 --------------YGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
                         Y  +   P    + +        ++  +        H ++ + + +
Sbjct: 400 IKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN----EYALHRSIVDHYNI 455

Query: 669 EKEHHAVSSGVWLIQSSFKPEVI--YVGELITWLLGHH 704
            K                 P  +  Y        +GHH
Sbjct: 456 PKTFD---------SDDLIPPYLDQY----FYSHIGHH 480

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc-binding motif, DNA replication; HET: DNA; 2.50A {Saccharomyces cerevisiae} Length = 460	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		707
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	99.98
3e0j_A		476	DNA polymerase subunit delta-2; DNA polymerase del	99.87
1s3l_A		190	Hypothetical protein MJ0936; phosphodiesterase, nu	95.99
4fbk_A		472	DNA repair and telomere maintenance protein NBS1,	95.51
4fbw_A		417	DNA repair protein RAD32; DNA double-strand break	94.02
3t1i_A		431	Double-strand break repair protein MRE11A; DNA rep	93.24
3av0_A		386	DNA double-strand break repair protein MRE11; DNA	92.36
3ib7_A		330	ICC protein; metallophosphoesterase, alpha-beta fo	90.74
2q8u_A		336	Exonuclease, putative; structural genomics, joint	86.77
2kkn_A		178	Uncharacterized protein; protein phosphatase 2A ho	85.89
3tho_B		379	Exonuclease, putative; adenosine triphosphate, bac	82.93
3flo_A		460	DNA polymerase alpha subunit B; protein-protein co	80.33

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

Probab=99.98  E-value=2.6e-31  Score=293.84  Aligned_cols=330  Identities=15%  Similarity=0.094  Sum_probs=229.6

Q ss_pred             CchhHHHHHHHHHHHHHHHhhhcc-----ccCCCCCCCCcccchHHHHhhcccCCcceEEEEEEeeecc---CCc-----
Q psy2623         272 DSDAKSKLFRERYNIIRQRTLRHS-----LFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK---ENR-----  338 (707)
Q Consensus       272 ~a~sk~~lfr~Ry~~i~qrllR~~-----~F~~~~~~~~~~klt~I~~Llg~~~~~~~~vvLG~Lsq~~---~G~-----  338 (707)
                      .-.++++++.+|-.-..+.+..+-     .|++++.                 .....++++|++....   +|+     
T Consensus         8 kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~-----------------~sq~~v~~vGRI~~Ds~~~egkLn~~S   70 (460)
T 3flo_A            8 NLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTI-----------------QSQSEIYAVGRIVPDSPTYDKFLNPES   70 (460)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTS-----------------CCSSCEEEEEEEEESSSSCCSCCCTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCccc-----------------CccccEEEEEEEeeCCCCCCCCcchhh
Confidence            345666777777665555555541     3555421                 1124899999998875   664     


Q ss_pred             EEeecC-----CceEEEEeeccccCCCccCcCeEEEEEeEec-CceEEEEeecCCCccCccccccccCcccccCCCCCch
Q psy2623         339 YFLEDP-----TGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS  412 (707)
Q Consensus       339 ~~LED~-----tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~-s~~f~v~~i~~PP~E~r~~S~~~~gn~D~fG~~~~~~  412 (707)
                      +.||-.     -.+|+||++..+  +--+.||+||.++|... ++.|.|+++--+|.-....+.                
T Consensus        71 l~LE~sr~~g~G~rV~Ldls~l~--~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s~----------------  132 (460)
T 3flo_A           71 LSLETSRMGGVGRRVRLDLSQVN--ELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVST----------------  132 (460)
T ss_dssp             EEEECCHHHHTTCEEEEECTTCC--CEEECTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEEE----------------
T ss_pred             eEEEeccccCCCeEEEeecccCC--ceeecCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCCC----------------
Confidence            688832     358999998754  22269999999999996 568999998533322111110                


Q ss_pred             hhhhhHHHhhh-hc-CCcceEEEEeCCCCCc-hhhchhhHHHhHhhhccc-cCCCCCCCCCCCcccc---cc--------
Q psy2623         413 LKSVNRMTKME-KN-NENAMIVILSDVHLDN-DKVRNNLCEFITSEFQGF-VPNSTMATNPCRVQYC---SQ--------  477 (707)
Q Consensus       413 ~k~~~~L~~~e-~~-~~~~~fVfvSD~~Lds-~~~~~~L~~~l~~lf~~~-~~~~p~aGNF~s~~y~---sq--------  477 (707)
                         .+.+.++. +. ....++|+.|+|+..+ .+..++|.+++.++-.++ .+.+.++|+|++....   +.        
T Consensus       133 ---~~~l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~  209 (460)
T 3flo_A          133 ---SQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQF  209 (460)
T ss_dssp             ---HHHHHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTC
T ss_pred             ---HHHhhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccc
Confidence               11122211 11 3557789999999665 677899999555533332 2224567999987532   11        


Q ss_pred             --ceEEeHHHHHHHhhhccCCCCCc-CC-ccccccccCCcceeEEEEecCCCCCCCCCCcccCCCccHHHHHHhhccCC-
Q psy2623         478 --EILVVREELLSKMCRNCIKFPEE-GD-ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVP-  552 (707)
Q Consensus       478 --eiv~~rd~f~~km~RN~i~fp~L-ad-L~~~p~l~~~~s~~~fVfVPG~~Dp~~~~~~LPrpplP~~~~~~l~~~~~-  552 (707)
                        ....|.+-|.           .. +. +.+   +. .++|  +|+|||++|++....++||||+++...    +..+ 
T Consensus       210 ~~~~~t~~~lF~-----------~~i~~il~~---l~-~~t~--VVlVPS~rD~~~~~~v~PQPpf~~k~l----~l~k~  268 (460)
T 3flo_A          210 KTQPKTLDELFL-----------KLFTPILKT---IS-PHIQ--TVLIPSTKDAISNHAAYPQASLIRKAL----QLPKR  268 (460)
T ss_dssp             SSCCSSHHHHHH-----------HHTHHHHTT---SC-TTSE--EEEECCTTBTTCSCCSBSBCCCCTTTT----TCCTT
T ss_pred             cccccCHHHHHH-----------HHHHHHHHh---cc-CCCE--EEEeCCcccccCCCCCcCCCCCChhhh----cCCcc
Confidence              1345666666           22 22 332   23 7789  999999999985246999999996532    2344 


Q ss_pred             CeEEeeCCcEEEECCEEEEEEehhHHHHhhhccccCC--CCCChhHHHHHHHhcCCCCCCCCCCCccccc----------
Q psy2623         553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDISKHFVRTLVSQGTLVSLPLNLCPVYW----------  620 (707)
Q Consensus       553 n~~f~SNPcRi~~~~qeIvifRdDl~~~l~r~~i~~p--~~~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w----------  620 (707)
                      |++|+||||++++++++|++++.|++.+|+ +....+  .+.|+..++++|||+|+||||+++...++.|          
T Consensus       269 nv~~~sNPc~~~in~v~igvss~Dil~~L~-e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~~~~~~~~  347 (460)
T 3flo_A          269 NFKCMANPSSFQINEIYFGCSNVDTFKDLK-EVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKE  347 (460)
T ss_dssp             TEEECCBSEEEEETTEEEEECCSCHHHHCC-CEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC------------
T ss_pred             cEEEeCCCEEEEECCEEEEEEcHHHHHHHH-HhhcCCCCccccHHHHHHHHHhhcCcccCcCCCcccccccccccccccc
Confidence            999999999999999999999999999996 433332  2368999999999999999999999999888          


Q ss_pred             ----------Ccccc----c-----c---c--CCCCcEEEecCCCCCceeeeCCeEEEcCCCCcccc
Q psy2623         621 ----------SQYGA----L-----S---L--YPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR  663 (707)
Q Consensus       621 ----------~~D~a----L-----~---L--~PlPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~  663 (707)
                                +|+++    |     .   +  +.+||+||+++...+|+..++||.|||||  +|.|
T Consensus       348 ~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv~~~v~INPG--~l~k  412 (460)
T 3flo_A          348 TNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPG--RFIR  412 (460)
T ss_dssp             -------------CCEECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEETTEEEEECC--CSBC
T ss_pred             cccccccccccccccCCcccceeccchhhcccCCCCCEEEcCCCCcCceEEeCCEEEECcc--cccC
Confidence                      22321    2     2   2  88999999999999999999999999999  9988

PyMOL of 3flo

>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}	Back alignment and structure

>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A	Back alignment and structure

>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*	Back alignment and structure

>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*	Back alignment and structure

>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}	Back alignment and structure

>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*	Back alignment and structure

>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A	Back alignment and structure

>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A	Back alignment and structure

>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}	Back alignment and structure

>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C	Back alignment and structure

>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		707
d1s3la_		165	Putative phosphodiesterase MJ0936 {Methanococcus j	96.68
d1su1a_		184	Phosphodiesterase yfcE {Escherichia coli [TaxId: 5	95.38
d2yvta1		257	Uncharacterized protein Aq_1956 {Aquifex aeolicus	95.23
d1uf3a_		228	Hypothetical protein TT1561 {Thermus thermophilus	94.08
d1z2wa1		182	Vacuolar protein sorting 29, VPS29 {Mouse (Mus mus	88.23
d3ck2a1		173	Uncharacterized protein SP1879 {Streptococcus pneu	87.78
d2a22a1		193	Vacuolar protein sorting 29, VPS29 {Cryptosporidiu	85.52

>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936 {Methanococcus jannaschii [TaxId: 2190]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Metallo-dependent phosphatases
superfamily: Metallo-dependent phosphatases
family: YfcE-like
domain: Putative phosphodiesterase MJ0936
species: Methanococcus jannaschii [TaxId: 2190]

Probab=96.68  E-value=0.016  Score=52.63  Aligned_cols=47  Identities=19%  Similarity=0.183  Sum_probs=39.1

Q ss_pred             CCcEEEecCCCCCceeeeCCeEEEcCCCCcccc---cCeeEEEEEeccccceEE
Q psy2623         631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR---NAFEVEKEHHAVSSGVWL  681 (707)
Q Consensus       631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~---~~~~f~~y~~~~~~~~~~  681 (707)
                      -+|+++.|+++.++...++|.+++|||  |-..   +.-+|..++  +.++.|-
T Consensus       112 ~~d~v~~GHtH~~~~~~~~~~~~iNPG--Svg~p~~~~~s~~ild--~~~~~~~  161 (165)
T d1s3la_         112 LYDVVIYGHTHERVFEEVDDVLVINPG--ECCGYLTGIPTIGILD--TEKKEYR  161 (165)
T ss_dssp             CCSEEEEECSSCCEEEEETTEEEEECC--CSSCTTTSCCEEEEEE--TTTTEEE
T ss_pred             CCCEEEECCcCcceEEEECCEEEEECC--CCCCCCCCCCEEEEEE--ccCCeEE
Confidence            358999999999999999999999999  8752   346788888  7777774

PyMOL of d1s3la_

>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d2yvta1 d.159.1.6 (A:4-260) Uncharacterized protein Aq_1956 {Aquifex aeolicus [TaxId: 63363]}	Back information, alignment and structure

>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure

>d1z2wa1 d.159.1.7 (A:1-182) Vacuolar protein sorting 29, VPS29 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d3ck2a1 d.159.1.7 (A:1-173) Uncharacterized protein SP1879 {Streptococcus pneumoniae [TaxId: 1313]}	Back information, alignment and structure

>d2a22a1 d.159.1.7 (A:4-196) Vacuolar protein sorting 29, VPS29 {Cryptosporidium parvum [TaxId: 5807]}	Back information, alignment and structure