Psyllid ID: psy2633
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | 2.2.26 [Sep-21-2011] | |||||||
| Q293F6 | 727 | FACT complex subunit Ssrp | yes | N/A | 0.912 | 0.958 | 0.571 | 0.0 | |
| Q05344 | 723 | FACT complex subunit Ssrp | yes | N/A | 0.888 | 0.939 | 0.563 | 0.0 | |
| Q08943 | 708 | FACT complex subunit SSRP | yes | N/A | 0.903 | 0.974 | 0.510 | 0.0 | |
| Q04931 | 709 | FACT complex subunit SSRP | yes | N/A | 0.905 | 0.976 | 0.513 | 0.0 | |
| Q04678 | 706 | FACT complex subunit SSRP | yes | N/A | 0.797 | 0.862 | 0.536 | 0.0 | |
| Q08945 | 709 | FACT complex subunit SSRP | yes | N/A | 0.863 | 0.930 | 0.515 | 0.0 | |
| Q9W602 | 693 | FACT complex subunit SSRP | N/A | N/A | 0.842 | 0.929 | 0.5 | 0.0 | |
| Q4H2R2 | 704 | FACT complex subunit SSRP | yes | N/A | 0.856 | 0.928 | 0.463 | 1e-167 | |
| O01683 | 689 | FACT complex subunit ssrp | yes | N/A | 0.845 | 0.937 | 0.396 | 1e-126 | |
| P41848 | 697 | FACT complex subunit SSRP | no | N/A | 0.789 | 0.865 | 0.407 | 1e-122 |
| >sp|Q293F6|SSRP1_DROPS FACT complex subunit Ssrp1 OS=Drosophila pseudoobscura pseudoobscura GN=Ssrp PE=3 SV=2 | Back alignment and function desciption |
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Score = 786 bits (2029), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 410/718 (57%), Positives = 527/718 (73%), Gaps = 21/718 (2%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT++LE+ ++++E RG L G+LK+TDQNI+FKN KTGKVEQI+ D+D +N QK VGTW
Sbjct: 1 MTDSLEYNDINAEVRGVLSSGRLKLTDQNIIFKNNKTGKVEQISVDDIDLINSQKFVGTW 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+F K+G+LHRF GF+++E +K+ F K + ++ EKE+ V+GWNWG +F+G+VLS
Sbjct: 61 GLRVFTKSGALHRFTGFRDSEHEKLGKFIKDAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD ++ T FE+PL VSQC TGKNEVT+E+H ND+A L+EMRF+IP E A D DPVE
Sbjct: 121 FDKDSKTIFEVPLSHVSQCVTGKNEVTLEYHQNDDAPVGLLEMRFHIPAVESA-DDDPVE 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
F +VM++ASVI+A+G++IA+F EIQ LTPRGRYDIKIF++FFQLHGKTFDYKIP+ +V
Sbjct: 180 KFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFV+SLDPPIKQGQTRYH+L LLF DE + +ELPFSE EL++KYE
Sbjct: 240 LRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+KELSGP YEVM K+MKV++ RKIT PG+F GH+GT+AV CS+KAAAGY+YPLERGF
Sbjct: 300 GKLEKELSGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I+IHKPP+HIRFEEI++VNFARSGGSTRSFDFE+ LK+G +H FSSIEKEEY KLFDFI
Sbjct: 360 IYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDFIT 419
Query: 421 EKKLRVKNTGKGEKPNYKE-DFGSSDDEKEPDAYLARVKREA---AERDDEDDEDEDEST 476
+KKL V N GK +K YK+ DFG SD+E EPDAYLAR+K EA E DD+ D+ ++EST
Sbjct: 420 QKKLHVSNMGK-DKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEEDDDGDDSDEEST 478
Query: 477 DEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKD 536
DEDF P++ ESDVAEEYDSN D+ + G ++K + +K K
Sbjct: 479 DEDFKPNENESDVAEEYDSNVEDDSDDDSDASGGGGDGGTDGSTKKKHKEKKNEKKEKTH 538
Query: 537 KESSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVS 596
KE KKKD PK+ SA+M+W ND RE IK++NPGI TEIAKKGGE+WK +
Sbjct: 539 KEKEKIKKPTKKKDTGKPKRGTSAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL- 597
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYKE-SGGGQDSDDGKTSKSKK-------PAKKKETA 648
K+K++++E NK K Y E ++ YK +GGG + + G TSK+ K P+KK T+
Sbjct: 598 -KDKSKWEEAANKDKIRYQEEMRNYKSGAGGGSEDEKGGTSKATKKRKSEPSPSKKANTS 656
Query: 649 STAVSPHKVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESD 706
+ KSKE+I + S+SD + K K+K S + K K KK E +SD
Sbjct: 657 GSG-----FKSKEYISDDESTSDDQEKVKEIPKKKNKSTAEDKDKNSKKSESEGGDSD 709
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Component of the FACT complex, a general chromatin factor that acts to reorganize nucleosomes. The FACT complex is involved in multiple processes that require DNA as a template such as mRNA elongation, DNA replication and DNA repair. During transcription elongation the FACT complex acts as a histone chaperone that both destabilizes and restores nucleosomal structure. It facilitates the passage of RNA polymerase II and transcription by promoting the dissociation of one histone H2A-H2B dimer from the nucleosome, then subsequently promotes the reestablishment of the nucleosome following the passage of RNA polymerase II. Binds specifically to single-stranded DNA and RNA with highest affinity for nucleotides G and U. The FACT complex is required for expression of Hox genes. Drosophila pseudoobscura pseudoobscura (taxid: 46245) |
| >sp|Q05344|SSRP1_DROME FACT complex subunit Ssrp1 OS=Drosophila melanogaster GN=Ssrp PE=1 SV=2 | Back alignment and function description |
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| >sp|Q08943|SSRP1_MOUSE FACT complex subunit SSRP1 OS=Mus musculus GN=Ssrp1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q04931|SSRP1_RAT FACT complex subunit SSRP1 OS=Rattus norvegicus GN=Ssrp1 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q04678|SSRP1_CHICK FACT complex subunit SSRP1 OS=Gallus gallus GN=SSRP1 PE=2 SV=2 | Back alignment and function description |
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| >sp|Q08945|SSRP1_HUMAN FACT complex subunit SSRP1 OS=Homo sapiens GN=SSRP1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q9W602|SSRP1_XENLA FACT complex subunit SSRP1 OS=Xenopus laevis GN=ssrp1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q4H2R2|SSRP1_CIOIN FACT complex subunit SSRP1 OS=Ciona intestinalis GN=SSRP1 PE=2 SV=1 | Back alignment and function description |
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| >sp|O01683|SSP1B_CAEEL FACT complex subunit ssrp1-B OS=Caenorhabditis elegans GN=hmg-3 PE=3 SV=1 | Back alignment and function description |
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| >sp|P41848|SSP1A_CAEEL FACT complex subunit SSRP1-A OS=Caenorhabditis elegans GN=hmg-4 PE=3 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| 383859589 | 740 | PREDICTED: FACT complex subunit Ssrp1-li | 0.941 | 0.971 | 0.616 | 0.0 | |
| 91091374 | 712 | PREDICTED: similar to AGAP012335-PA [Tri | 0.845 | 0.907 | 0.634 | 0.0 | |
| 350409390 | 736 | PREDICTED: FACT complex subunit Ssrp1-li | 0.943 | 0.979 | 0.612 | 0.0 | |
| 340713595 | 735 | PREDICTED: FACT complex subunit Ssrp1-li | 0.938 | 0.975 | 0.608 | 0.0 | |
| 110766132 | 728 | PREDICTED: FACT complex subunit Ssrp1 [A | 0.933 | 0.979 | 0.621 | 0.0 | |
| 380011419 | 729 | PREDICTED: LOW QUALITY PROTEIN: FACT com | 0.941 | 0.986 | 0.614 | 0.0 | |
| 270014157 | 840 | hypothetical protein TcasGA2_TC012866 [T | 0.824 | 0.75 | 0.642 | 0.0 | |
| 253314412 | 755 | structure specific recognition protein-l | 0.861 | 0.871 | 0.644 | 0.0 | |
| 307204835 | 737 | FACT complex subunit Ssrp1 [Harpegnathos | 0.945 | 0.979 | 0.606 | 0.0 | |
| 332025514 | 721 | FACT complex subunit Ssrp1 [Acromyrmex e | 0.854 | 0.905 | 0.639 | 0.0 |
| >gi|383859589|ref|XP_003705276.1| PREDICTED: FACT complex subunit Ssrp1-like [Megachile rotundata] | Back alignment and taxonomy information |
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Score = 881 bits (2276), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 472/765 (61%), Positives = 576/765 (75%), Gaps = 46/765 (6%)
Query: 5 LEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRI 64
LE+ +V +E +GA+ PG+LK+TDQ+++FKN+KTGKVEQI+ D++ VN+QK +GTW LRI
Sbjct: 4 LEYTDVLAEVKGAMTPGRLKLTDQHLIFKNQKTGKVEQISASDMEMVNYQKFIGTWGLRI 63
Query: 65 FLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVN 124
FLKNG+LHRF GFKE + +KI FF N+K D+ EKELS++GWNWG +F G+VLSFDV
Sbjct: 64 FLKNGTLHRFRGFKEGDQEKIAKFFTQNYKKDMLEKELSLKGWNWGTARFNGSVLSFDVG 123
Query: 125 NTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKD 184
+ TAFEIPL DVSQC TGKNEVT+EFH ND+A SL+EMRF+IP ++ + D DPVEAF
Sbjct: 124 HHTAFEIPLYDVSQCNTGKNEVTLEFHQNDDAPVSLMEMRFHIPVSD-SVDQDPVEAFHQ 182
Query: 185 SVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMF 244
VM +ASVI+ +GDAIA+F EIQCLTPRGRYDIKIF SFFQLHGKTFDYKIP+STVLR+F
Sbjct: 183 QVMEKASVISVSGDAIAIFREIQCLTPRGRYDIKIFQSFFQLHGKTFDYKIPMSTVLRLF 242
Query: 245 TLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLD 304
LPHKD RQ +FV+SLDPPIKQGQTRYH+L LLFNQ+E + +ELPFSE+ELKEKYE KL
Sbjct: 243 LLPHKDNRQMYFVVSLDPPIKQGQTRYHYLVLLFNQEEETSIELPFSEKELKEKYEDKLP 302
Query: 305 KELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIH 364
KELSGPTYEVM K+MKVI+NRK+T PG+F H+GT A++CS+KAAAGY+YPLERGFI++H
Sbjct: 303 KELSGPTYEVMGKVMKVIINRKLTGPGNFISHSGTLAISCSFKAAAGYLYPLERGFIYVH 362
Query: 365 KPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIREKKL 424
KPPIHIRFEEIA+VNFAR GGSTRSFDFEIEL SGV+HTFSSIEKEEYGKLFDFI KKL
Sbjct: 363 KPPIHIRFEEIASVNFARGGGSTRSFDFEIELTSGVVHTFSSIEKEEYGKLFDFITSKKL 422
Query: 425 RVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDEDDED-EDESTDEDFNPD 483
RVKN GK +K NY DFG SD E EPDAYLARVK EA ERD ED++D E+ESTDEDFNP+
Sbjct: 423 RVKNRGKSDKLNYDNDFGDSDQEDEPDAYLARVKAEAQERDAEDNQDSEEESTDEDFNPN 482
Query: 484 QAESDVAEEYDSNPTPTDSDEDSDAS-----EGTKKKKKEKSRKTITISEKPRKSKKDKE 538
Q ESDVAEEYDSNP ++S+ DSDAS + K+KK++K + T+SEKPRK
Sbjct: 483 QDESDVAEEYDSNPNSSESENDSDASGKSEKKEKKEKKEKKPKSAKTVSEKPRKP----- 537
Query: 539 SSGGSTKRKKKDKNAPKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSK 598
++K++D N PK+P +A+M+W N REKIK DNPGI+ TEIAKKGGE+W+ + K
Sbjct: 538 ----RKQKKERDANKPKRPPTAFMIWLNSNREKIKADNPGIAVTEIAKKGGEMWREL--K 591
Query: 599 EKAEYDEKVNKAKEDYNEALKAYKESGGGQDSD------DGKTSKSKKPAKKKETASTAV 652
+K+E+++K KAK++Y ++K Y+ SGGGQ KT K++K KKK V
Sbjct: 592 DKSEWEQKAAKAKKEYAASMKEYEASGGGQKDKKEKADKSEKTDKAEKSEKKKVDTKKEV 651
Query: 653 SPH--KVKSKEFIESNGSSSDSDDDKKASSKRKRDSDEDSKAKTKKKKEKSESESDSGES 710
P KSKE+I + SSSD D K K+ SDED +E D G+
Sbjct: 652 KPATGSFKSKEYISEDESSSDEDTKK----SEKKHSDED-------------TEPDKGKK 694
Query: 711 EKEKKSKSKPKGDKSKSKSKKEDEIDDEEYDEPVESTPPSSDAGS 755
+K+S K K DE DE EPVESTPPSSDA S
Sbjct: 695 RGDKRSAEDDDKKAKKEKKSDSDEGSDE---EPVESTPPSSDAES 736
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Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91091374|ref|XP_973014.1| PREDICTED: similar to AGAP012335-PA [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|350409390|ref|XP_003488719.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus impatiens] | Back alignment and taxonomy information |
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| >gi|340713595|ref|XP_003395326.1| PREDICTED: FACT complex subunit Ssrp1-like [Bombus terrestris] | Back alignment and taxonomy information |
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| >gi|110766132|ref|XP_001120264.1| PREDICTED: FACT complex subunit Ssrp1 [Apis mellifera] | Back alignment and taxonomy information |
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| >gi|380011419|ref|XP_003689803.1| PREDICTED: LOW QUALITY PROTEIN: FACT complex subunit Ssrp1-like [Apis florea] | Back alignment and taxonomy information |
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| >gi|270014157|gb|EFA10605.1| hypothetical protein TcasGA2_TC012866 [Tribolium castaneum] | Back alignment and taxonomy information |
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| >gi|253314412|ref|NP_001156579.1| structure specific recognition protein-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
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| >gi|307204835|gb|EFN83393.1| FACT complex subunit Ssrp1 [Harpegnathos saltator] | Back alignment and taxonomy information |
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| >gi|332025514|gb|EGI65677.1| FACT complex subunit Ssrp1 [Acromyrmex echinatior] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 764 | ||||||
| FB|FBgn0010278 | 723 | Ssrp "Structure specific recog | 0.807 | 0.853 | 0.570 | 1.8e-207 | |
| ZFIN|ZDB-GENE-031118-9 | 705 | ssrp1a "structure specific rec | 0.803 | 0.870 | 0.504 | 1.4e-174 | |
| UNIPROTKB|Q08945 | 709 | SSRP1 "FACT complex subunit SS | 0.660 | 0.712 | 0.538 | 2.8e-174 | |
| UNIPROTKB|Q9W602 | 693 | ssrp1 "FACT complex subunit SS | 0.793 | 0.874 | 0.500 | 4.6e-174 | |
| MGI|MGI:107912 | 708 | Ssrp1 "structure specific reco | 0.660 | 0.713 | 0.536 | 5.9e-174 | |
| RGD|621143 | 709 | Ssrp1 "structure specific reco | 0.660 | 0.712 | 0.536 | 5.9e-174 | |
| UNIPROTKB|Q04931 | 709 | Ssrp1 "FACT complex subunit SS | 0.660 | 0.712 | 0.536 | 5.9e-174 | |
| UNIPROTKB|I3LLA8 | 709 | SSRP1 "Uncharacterized protein | 0.660 | 0.712 | 0.538 | 7.5e-174 | |
| UNIPROTKB|F6QYV9 | 709 | SSRP1 "Uncharacterized protein | 0.660 | 0.712 | 0.536 | 2.5e-173 | |
| UNIPROTKB|B6ZLK1 | 706 | SSRP1 "Structure-specific reco | 0.794 | 0.859 | 0.504 | 3.8e-172 |
| FB|FBgn0010278 Ssrp "Structure specific recognition protein" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1882 (667.6 bits), Expect = 1.8e-207, Sum P(2) = 1.8e-207
Identities = 357/626 (57%), Positives = 459/626 (73%)
Query: 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTW 60
MT++LE+ ++++E RG LC G+LK+T+QNI+FKN KTGKVEQI+ D+D +N QK VGTW
Sbjct: 1 MTDSLEYNDINAEVRGVLCSGRLKMTEQNIIFKNTKTGKVEQISAEDIDLINSQKFVGTW 60
Query: 61 ALRIFLKNGSLHRFAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLS 120
LR+F K G LHRF GF+++E +K+ F K + ++ EKE+ V+GWNWG +F+G+VLS
Sbjct: 61 GLRVFTKGGVLHRFTGFRDSEHEKLGKFIKAAYSQEMVEKEMCVKGWNWGTARFMGSVLS 120
Query: 121 FDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVE 180
FD + T FE+PL VSQC TGKNEVT+EFH ND+A L+EMRF+IP E A + DPV+
Sbjct: 121 FDKESKTIFEVPLSHVSQCVTGKNEVTLEFHQNDDAPVGLLEMRFHIPAVESA-EEDPVD 179
Query: 181 AFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTV 240
F +VM++ASVI+A+G++IA+F EIQ LTPRGRYDIKIF++FFQLHGKTFDYKIP+ +V
Sbjct: 180 KFHQNVMSKASVISASGESIAIFREIQILTPRGRYDIKIFSTFFQLHGKTFDYKIPMDSV 239
Query: 241 LRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYE 300
LR+F LPHKD RQ FFV+SLDPPIKQGQTRYH+L LLF DE + +ELPFSE EL++KYE
Sbjct: 240 LRLFMLPHKDSRQMFFVLSLDPPIKQGQTRYHYLVLLFAPDEETTIELPFSEAELRDKYE 299
Query: 301 GKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGF 360
GKL+KE+SGP YEVM K+MKV++ RKIT PG+F GH+GT+AV CS+KAAAGY+YPLERGF
Sbjct: 300 GKLEKEISGPVYEVMGKVMKVLIGRKITGPGNFIGHSGTAAVGCSFKAAAGYLYPLERGF 359
Query: 361 IFIHKPPIHIRFEEIATVNFARSGGSTRSFDFEIELKSGVLHTFSSIEKEEYGKLFDFIR 420
I+IHKPP+HIRFEEI++VNFARSGGSTRSFDFE+ LK+G +H FSSIEKEEY KLFD+I
Sbjct: 360 IYIHKPPLHIRFEEISSVNFARSGGSTRSFDFEVTLKNGTVHIFSSIEKEEYAKLFDYIT 419
Query: 421 EKKLRVKNTGKGEKPNYKE-DFGSSDDEKEPDAYLARVKXXXXXXXXXXXXXXXXXXXXX 479
+KKL V N GK +K YK+ DFG SD+E EPDAYLAR+K
Sbjct: 420 QKKLHVSNMGK-DKSGYKDVDFGDSDNENEPDAYLARLKAEAREKEEDDDDGDSDEESTD 478
Query: 480 --FNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTXXXXXXXXXXTITISEKPRXXXXXX 537
F P++ ESDVAEEYDSN +DSD+DSDAS G +K +
Sbjct: 479 EDFKPNENESDVAEEYDSN-VESDSDDDSDASGGGGDSDGAKKKKEKKSEKKEKKEKKHK 537
Query: 538 XXXXXXXXXXXXXXXXX-XXPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVS 596
+A+M+W ND RE IK++NPGI TEIAKKGGE+WK +
Sbjct: 538 EKERTKKPSKKKKDSGKPKRATTAFMLWLNDTRESIKRENPGIKVTEIAKKGGEMWKEL- 596
Query: 597 SKEKAEYDEKVNKAKEDYNEALKAYK 622
K+K+++++ K K+ Y++ ++ YK
Sbjct: 597 -KDKSKWEDAAAKDKQRYHDEMRNYK 621
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| ZFIN|ZDB-GENE-031118-9 ssrp1a "structure specific recognition protein 1a" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q08945 SSRP1 "FACT complex subunit SSRP1" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q9W602 ssrp1 "FACT complex subunit SSRP1" [Xenopus laevis (taxid:8355)] | Back alignment and assigned GO terms |
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| MGI|MGI:107912 Ssrp1 "structure specific recognition protein 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|621143 Ssrp1 "structure specific recognition protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q04931 Ssrp1 "FACT complex subunit SSRP1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|I3LLA8 SSRP1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6QYV9 SSRP1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|B6ZLK1 SSRP1 "Structure-specific recognition protein 1" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q4H2R2 | SSRP1_CIOIN | No assigned EC number | 0.4631 | 0.8560 | 0.9289 | yes | N/A |
| Q2USL9 | POB3_ASPOR | No assigned EC number | 0.3106 | 0.6570 | 0.8715 | yes | N/A |
| Q05153 | SSRP1_ARATH | No assigned EC number | 0.3618 | 0.7958 | 0.9411 | yes | N/A |
| O94529 | POB3_SCHPO | No assigned EC number | 0.3574 | 0.6230 | 0.9296 | yes | N/A |
| Q04931 | SSRP1_RAT | No assigned EC number | 0.5138 | 0.9057 | 0.9760 | yes | N/A |
| Q293F6 | SSRP1_DROPS | No assigned EC number | 0.5710 | 0.9123 | 0.9587 | yes | N/A |
| Q6BS60 | POB3_DEBHA | No assigned EC number | 0.3407 | 0.6256 | 0.8851 | yes | N/A |
| Q5AYE3 | POB3_EMENI | No assigned EC number | 0.3126 | 0.6505 | 0.8643 | yes | N/A |
| Q4IJU0 | POB3_GIBZE | No assigned EC number | 0.3236 | 0.6099 | 0.8189 | yes | N/A |
| Q756X6 | POB3_ASHGO | No assigned EC number | 0.3301 | 0.6243 | 0.8800 | yes | N/A |
| Q04636 | POB3_YEAST | No assigned EC number | 0.3309 | 0.6335 | 0.8768 | yes | N/A |
| Q04678 | SSRP1_CHICK | No assigned EC number | 0.5368 | 0.7971 | 0.8626 | yes | N/A |
| Q6CWD7 | POB3_KLULA | No assigned EC number | 0.3296 | 0.6348 | 0.8738 | yes | N/A |
| Q05344 | SSRP1_DROME | No assigned EC number | 0.5634 | 0.8887 | 0.9391 | yes | N/A |
| Q4WGK6 | POB3_ASPFU | No assigned EC number | 0.3012 | 0.6649 | 0.8865 | yes | N/A |
| O01683 | SSP1B_CAEEL | No assigned EC number | 0.3964 | 0.8455 | 0.9375 | yes | N/A |
| Q08943 | SSRP1_MOUSE | No assigned EC number | 0.5103 | 0.9031 | 0.9745 | yes | N/A |
| Q08945 | SSRP1_HUMAN | No assigned EC number | 0.5150 | 0.8638 | 0.9308 | yes | N/A |
| Q9LGR0 | SSP1A_ORYSJ | No assigned EC number | 0.3471 | 0.8062 | 0.9609 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 764 | |||
| pfam03531 | 213 | pfam03531, SSrecog, Structure-specific recognition | 1e-104 | |
| COG5165 | 508 | COG5165, POB3, Nucleosome-binding factor SPN, POB3 | 1e-102 | |
| cd13230 | 137 | cd13230, PH1_SSRP1-like, Structure Specific Recogn | 2e-73 | |
| cd13231 | 100 | cd13231, PH2_SSRP1-like, Structure Specific Recogn | 4e-48 | |
| pfam08512 | 93 | pfam08512, Rtt106, Histone chaperone Rttp106-like | 1e-31 | |
| pfam00505 | 69 | pfam00505, HMG_box, HMG (high mobility group) box | 4e-20 | |
| cd01390 | 66 | cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class | 4e-19 | |
| cd00084 | 66 | cd00084, HMG-box, High Mobility Group (HMG)-box is | 8e-19 | |
| smart00398 | 70 | smart00398, HMG, high mobility group | 4e-18 | |
| COG5648 | 211 | COG5648, NHP6B, Chromatin-associated proteins cont | 6e-17 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 1e-11 | |
| cd01388 | 72 | cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I | 4e-09 | |
| PTZ00199 | 94 | PTZ00199, PTZ00199, high mobility group protein; P | 5e-09 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-08 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 7e-08 | |
| pfam09011 | 69 | pfam09011, DUF1898, Domain of unknown function (DU | 2e-07 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 2e-06 | |
| cd01389 | 77 | cd01389, MATA_HMG-box, MATA_HMG-box, class I membe | 3e-06 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-05 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 1e-04 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 1e-04 | |
| PRK07735 | 430 | PRK07735, PRK07735, NADH dehydrogenase subunit C; | 2e-04 | |
| PTZ00482 | 844 | PTZ00482, PTZ00482, membrane-attack complex/perfor | 2e-04 | |
| pfam03154 | 979 | pfam03154, Atrophin-1, Atrophin-1 family | 2e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 3e-04 | |
| PLN03237 | 1465 | PLN03237, PLN03237, DNA topoisomerase 2; Provision | 4e-04 | |
| PTZ00108 | 1388 | PTZ00108, PTZ00108, DNA topoisomerase 2-like prote | 5e-04 | |
| COG5271 | 4600 | COG5271, MDN1, AAA ATPase containing von Willebran | 5e-04 | |
| TIGR00927 | 1096 | TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | 7e-04 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 8e-04 | |
| pfam04615 | 728 | pfam04615, Utp14, Utp14 protein | 9e-04 | |
| pfam05764 | 238 | pfam05764, YL1, YL1 nuclear protein | 9e-04 | |
| PTZ00121 | 2084 | PTZ00121, PTZ00121, MAEBL; Provisional | 0.001 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.001 | |
| PRK05901 | 509 | PRK05901, PRK05901, RNA polymerase sigma factor; P | 0.002 | |
| pfam09073 | 424 | pfam09073, BUD22, BUD22 | 0.002 | |
| pfam08208 | 193 | pfam08208, RNA_polI_A34, DNA-directed RNA polymera | 0.002 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 0.002 | |
| pfam10243 | 506 | pfam10243, MIP-T3, Microtubule-binding protein MIP | 0.003 | |
| pfam07423 | 214 | pfam07423, DUF1510, Protein of unknown function (D | 0.003 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.004 | |
| pfam04147 | 809 | pfam04147, Nop14, Nop14-like family | 0.004 |
| >gnl|CDD|202677 pfam03531, SSrecog, Structure-specific recognition protein (SSRP1) | Back alignment and domain information |
|---|
Score = 318 bits (818), Expect = e-104
Identities = 126/215 (58%), Positives = 161/215 (74%), Gaps = 2/215 (0%)
Query: 74 FAGFKETEIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPL 133
F GF++ ++DK+ +F K+NF + EKELSV+GWNWG F G+ L+FDV + AFE+PL
Sbjct: 1 FDGFRDQDLDKLQNFIKSNFSKSIDEKELSVKGWNWGEADFKGSNLTFDVGSKPAFEVPL 60
Query: 134 RDVSQCTTGKNEVTVEFHPNDEAAESLIEMRFYIPTNEIAGDTDPVEAFKDSVMNQASVI 193
+VSQ GKNEVT+EFH ND++ SL+EMRF++P D D VE FK++V+ +A VI
Sbjct: 61 SNVSQTLQGKNEVTLEFHQNDDSGVSLMEMRFHVPVTNTEDDGDAVEVFKETVLAKADVI 120
Query: 194 NATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQ 253
AT DAI F EI LTPRGRYDIK++ +F +LHGKT+DYKIP S++ R+F LPHKD RQ
Sbjct: 121 QATEDAIVTFEEILILTPRGRYDIKLYPTFLRLHGKTYDYKIPYSSINRLFLLPHKDQRQ 180
Query: 254 NFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMEL 288
FFVISLDPPI+QGQTRY +L L F +DE EMEL
Sbjct: 181 VFFVISLDPPIRQGQTRYPYLVLQFEKDE--EMEL 213
|
SSRP1 has been implicated in transcriptional initiation and elongation and in DNA replication and repair. This domain belongs to the Pleckstrin homology fold superfamily. Length = 213 |
| >gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >gnl|CDD|241384 cd13230, PH1_SSRP1-like, Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 1 | Back alignment and domain information |
|---|
| >gnl|CDD|241385 cd13231, PH2_SSRP1-like, Structure Specific Recognition protein 1 (SSRP1) Pleckstrin homology (PH) domain, repeat 2 | Back alignment and domain information |
|---|
| >gnl|CDD|219876 pfam08512, Rtt106, Histone chaperone Rttp106-like | Back alignment and domain information |
|---|
| >gnl|CDD|189580 pfam00505, HMG_box, HMG (high mobility group) box | Back alignment and domain information |
|---|
| >gnl|CDD|238686 cd01390, HMGB-UBF_HMG-box, HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|238037 cd00084, HMG-box, High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors | Back alignment and domain information |
|---|
| >gnl|CDD|197700 smart00398, HMG, high mobility group | Back alignment and domain information |
|---|
| >gnl|CDD|227935 COG5648, NHP6B, Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238684 cd01388, SOX-TCF_HMG-box, SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|185511 PTZ00199, PTZ00199, high mobility group protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|204115 pfam09011, DUF1898, Domain of unknown function (DUF1898) | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|238685 cd01389, MATA_HMG-box, MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated | Back alignment and domain information |
|---|
| >gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
| >gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|218177 pfam04615, Utp14, Utp14 protein | Back alignment and domain information |
|---|
| >gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein | Back alignment and domain information |
|---|
| >gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220102 pfam09073, BUD22, BUD22 | Back alignment and domain information |
|---|
| >gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit RPA34 | Back alignment and domain information |
|---|
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3 | Back alignment and domain information |
|---|
| >gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510) | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
| >gnl|CDD|217927 pfam04147, Nop14, Nop14-like family | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| KOG0526|consensus | 615 | 100.0 | ||
| COG5165 | 508 | POB3 Nucleosome-binding factor SPN, POB3 subunit [ | 100.0 | |
| PF03531 | 222 | SSrecog: Structure-specific recognition protein (S | 100.0 | |
| KOG1189|consensus | 960 | 100.0 | ||
| COG5406 | 1001 | Nucleosome binding factor SPN, SPT16 subunit [Tran | 100.0 | |
| PF08512 | 95 | Rtt106: Histone chaperone Rttp106-like; InterPro: | 99.94 | |
| PTZ00199 | 94 | high mobility group protein; Provisional | 99.83 | |
| cd01389 | 77 | MATA_HMG-box MATA_HMG-box, class I member of the H | 99.72 | |
| cd01388 | 72 | SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of | 99.67 | |
| COG5648 | 211 | NHP6B Chromatin-associated proteins containing the | 99.66 | |
| PF00505 | 69 | HMG_box: HMG (high mobility group) box; InterPro: | 99.65 | |
| cd01390 | 66 | HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and II | 99.63 | |
| smart00398 | 70 | HMG high mobility group. | 99.62 | |
| PF09011 | 73 | HMG_box_2: HMG-box domain; InterPro: IPR015101 Thi | 99.61 | |
| KOG0381|consensus | 96 | 99.58 | ||
| KOG0527|consensus | 331 | 99.53 | ||
| cd00084 | 66 | HMG-box High Mobility Group (HMG)-box is found in | 99.52 | |
| KOG3248|consensus | 421 | 99.17 | ||
| KOG4715|consensus | 410 | 98.88 | ||
| KOG0528|consensus | 511 | 98.74 | ||
| PF14887 | 85 | HMG_box_5: HMG (high mobility group) box 5; PDB: 1 | 98.43 | |
| KOG2746|consensus | 683 | 97.98 | ||
| PF14470 | 96 | bPH_3: Bacterial PH domain | 96.53 | |
| PF06382 | 183 | DUF1074: Protein of unknown function (DUF1074); In | 96.44 | |
| PF04690 | 170 | YABBY: YABBY protein; InterPro: IPR006780 YABBY pr | 96.37 | |
| COG5648 | 211 | NHP6B Chromatin-associated proteins containing the | 96.03 | |
| PF08512 | 95 | Rtt106: Histone chaperone Rttp106-like; InterPro: | 95.03 | |
| PF08073 | 55 | CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 | 94.2 | |
| KOG1189|consensus | 960 | 91.47 | ||
| PF14470 | 96 | bPH_3: Bacterial PH domain | 90.28 | |
| PF05764 | 240 | YL1: YL1 nuclear protein; InterPro: IPR008895 The | 89.5 | |
| KOG1832|consensus | 1516 | 88.88 | ||
| PF04769 | 201 | MAT_Alpha1: Mating-type protein MAT alpha 1; Inter | 87.96 | |
| KOG0526|consensus | 615 | 85.91 | ||
| PF08567 | 79 | TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal dom | 84.06 | |
| PF06244 | 122 | DUF1014: Protein of unknown function (DUF1014); In | 83.76 | |
| PF04283 | 221 | CheF-arch: Chemotaxis signal transduction system p | 82.81 | |
| COG0779 | 153 | Uncharacterized protein conserved in bacteria [Fun | 81.63 |
| >KOG0526|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-174 Score=1406.41 Aligned_cols=593 Identities=55% Similarity=0.953 Sum_probs=547.7
Q ss_pred CCccccccceeecccCccccceEEEecCceeeeeCCCCceEEecCCCcceeEEEEeeCceeEEEEeeCCceEEecCCChh
Q psy2633 1 MTEALEFQEVSSEFRGALCPGKLKITDQNIVFKNKKTGKVEQINGPDLDFVNWQKLVGTWALRIFLKNGSLHRFAGFKET 80 (764)
Q Consensus 1 m~~~~~f~~i~~~~~g~~~~G~lk~~~~g~~~k~~~~g~~~~i~~~di~~~~w~r~~~~~~l~i~~~~~~~~~f~Gf~~~ 80 (764)
||++|+|+||||+++|..++|+|||+.+||+||+.+||++++|+++||..+.|+|++|+|+|||++++|.+|+|+||+++
T Consensus 1 mae~l~fn~iyl~~~G~~~~G~lkit~~gi~~K~~~ggk~~~v~~sei~~~~w~k~~r~~~LrV~tk~g~~~~~~GF~d~ 80 (615)
T KOG0526|consen 1 MAESLEFNDIYLEVSGHLKPGTLKITESGIGFKNSKGGKVVTVPASEIDKVKWQKGVRGYGLRVFTKDGGVYRFDGFRDD 80 (615)
T ss_pred CCcccccCceEEecccccccceEEEccCceeEeeCCCCceEEeehHHhhhhhhhhhccccceEEEccCCceEEecCcCHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhcCCCCCceeeeeeeeeeeeeeEecceEEEEeCCeeeEEeeccccccccCCCceEEEEecCCCCCccce
Q psy2633 81 EIDKICSFFKTNFKIDVPEKELSVRGWNWGGTKFIGNVLSFDVNNTTAFEIPLRDVSQCTTGKNEVTVEFHPNDEAAESL 160 (764)
Q Consensus 81 d~~~l~~~~~~~~~~~l~~~e~~~~G~NwG~~~~~~~~l~f~v~~k~~feip~~~is~~~~~Knev~lef~~~d~~~d~L 160 (764)
|++.|++||+++|+++|.+++|||+|||||++.|.|+.|+|.|++||||||||++|+||.+|||||+|||||+|+++..|
T Consensus 81 d~~~L~~ff~~~~~~~i~qkel~ikGwNwGea~~~G~~l~F~~~skpiFEIP~s~Vsn~l~gKNEv~LEFh~nDda~~~L 160 (615)
T KOG0526|consen 81 DLEKLKSFFSSNFSITIEQKELSIKGWNWGEADFKGQELVFDVNSKPIFEIPLSDVSNTLTGKNEVTLEFHQNDDAPVGL 160 (615)
T ss_pred HHHHHHHHHHHhhccchhhheeeecccccccccccCcEEEEeeCCceeEEeehhhhhhhhcCCceEEEEEeccCCCCcce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEecCCCCCCC-CCChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccceEEeeccceeeeecCC
Q psy2633 161 IEMRFYIPTNEIAG-DTDPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPIST 239 (764)
Q Consensus 161 ~emRf~vP~~~~~~-~~~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~d~kI~y~n 239 (764)
||||||||.+..++ +.+++++|+++|+.+|+|++++|++||+|++|+||||||||+|+||+++||||||||||||+|++
T Consensus 161 mEmRF~iP~d~~~ged~~~~e~F~~~v~~kAdv~~~~gdaI~~f~~i~~lTPRGRYdI~iy~t~lrL~GkTyDyKI~y~S 240 (615)
T KOG0526|consen 161 MEMRFHIPEDQEDGEDRDKVEAFYENVLAKADVSSAVGDAIVSFEEILCLTPRGRYDIKIYPTFLRLHGKTYDYKIPYKS 240 (615)
T ss_pred EEEEEecCccccccccccHHHHHHHHHHHhcCcccccCCceEEeeeeeeecCCccceeEEehhhhhhcccccceecchhh
Confidence 99999999877543 45899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeEEeeecCCCceEEEEeccCCcccCCCccceeEEEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCcHHHHHHHHH
Q psy2633 240 VLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIM 319 (764)
Q Consensus 240 I~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~ 319 (764)
|+|||+|||++++|+||||+|+||||||||||||||+||.++++++++|++++++|+.+|+++|++.|+||+|+||++||
T Consensus 241 I~rLflLPk~d~rh~~fVisldPPIRQGQTrY~~LV~qF~kDee~e~eLslsdE~l~~k~~~kL~k~ysg~i~Ev~s~V~ 320 (615)
T KOG0526|consen 241 INRLFLLPKKDQRHVYFVISLDPPIRQGQTRYPFLVLQFGKDEEVELELSLSDEELEEKYKGKLKKEYSGPIYEVFSIVM 320 (615)
T ss_pred eeeeEeccCCCCceEEEEEecCCccccCccccceEEEEeccccceeEeecccHHHHhhhhcchhhhhcCccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceeeccCCCcccCCCcceeeeeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEee---cCccceEeEEEEE
Q psy2633 320 KVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARS---GGSTRSFDFEIEL 396 (764)
Q Consensus 320 k~l~~~ki~~P~~F~s~~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~---~~~~rtFDm~i~~ 396 (764)
++|||+|||+||+|.|+.|++||+|++||++|+||||++|||||||||+||+|+||.+|||+|+ ++++|||||+|++
T Consensus 321 k~L~~rKit~Pg~F~s~~g~~av~CS~KAneG~LYPLekgFlFl~KP~l~I~f~EIS~V~fsR~~~s~t~trtFD~ei~l 400 (615)
T KOG0526|consen 321 KALCGRKITVPGEFLSHSGTAAVKCSFKANEGLLYPLEKGFLFLPKPPLYIRFEEISSVNFSRSGLSGTSTRTFDFEITL 400 (615)
T ss_pred HHHhCceeeccccccccCCCceeeeeecccCceEeecccceEeecCCceEeeccceeeEEEEeccCCccceeeEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999999999999999995 5679999999999
Q ss_pred cCCceEEEeccchhhHhhHHHHHhhcCceeeecCCCCCCCcccccCCCCCCCChhHHHHHHHHhhhcCCCC---CCCCCC
Q psy2633 397 KSGVLHTFSSIEKEEYGKLFDFIREKKLRVKNTGKGEKPNYKEDFGSSDDEKEPDAYLARVKREAAERDDE---DDEDED 473 (764)
Q Consensus 397 K~~~~~~Fs~I~~eE~~~L~~~l~~k~i~I~n~~~~~~~~~~~~~~~~dde~~~d~~~e~~~~e~~~~~~~---~~dddd 473 (764)
|+|++|+|++|.++||.+|++||++|+|+|+|.+. +++.|+|++++++++..++++ ++.|++
T Consensus 401 k~g~~~tFs~i~keE~~~L~~fl~sK~lki~N~~~---------------~~~~D~~~~~~~~e~~~~edd~~d~~~de~ 465 (615)
T KOG0526|consen 401 KSGTSYTFSNISKEEYGKLFDFLNSKGLKIRNEGR---------------EDEIDEYLATLKAEDRDEEDDSDDSSTDED 465 (615)
T ss_pred cCCCeeeecccCHHHHHHHHHHHhhcCceeecCCc---------------ccccchHHhhhccccchhhhcccccccccc
Confidence 99999999999999999999999999999999876 345678899988887766543 224566
Q ss_pred CCCcCCCCCCCCccccccccCCCCCCCCCCCCCcccccchhhhhhhhccccccccCcccccccccCCCCCccccccCCCC
Q psy2633 474 ESTDEDFNPDQAESDVAEEYDSNPTPTDSDEDSDASEGTKKKKKEKSRKTITISEKPRKSKKDKESSGGSTKRKKKDKNA 553 (764)
Q Consensus 474 ee~Dedf~~~~~esd~~ee~dS~~e~~~~s~~~~~se~ee~e~k~KK~k~~k~~~KpkKkKk~k~~kk~kk~kk~kdp~~ 553 (764)
++.|+||.++++++|++|+|||+.. ++++++++|++.+ +++++. .||+..++.+.++++++.||+||||+
T Consensus 466 ~e~Dedf~~~~~~d~vaee~dS~~~--ds~~~eg~S~~~~--k~~~~~------kk~K~ek~~k~~~~~k~~kk~kdpna 535 (615)
T KOG0526|consen 466 EEEDEDFKPGEEDDDVAEEFDSDEA--DSSDEEGDSDEPK--KERSSE------KKPKREKKEKEKEKKKKGKKKKDPNA 535 (615)
T ss_pred hhhhhhcccCccccccccccCCccc--ccccccCCccccc--cccccc------ccchhhhHhhhhccccCcccCCCCCC
Confidence 7889999999988899999999422 3333344444211 111111 12222233344445577889999999
Q ss_pred CCCcchhhhhhHHHHHHHHHHhCCCCCHHHHHHHHHHhhhccCHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2633 554 PKKPMSAYMMWFNDMREKIKKDNPGISFTEIAKKGGELWKTVSSKEKAEYDEKVNKAKEDYNEALKAYK 622 (764)
Q Consensus 554 PKrP~sAy~lF~~e~R~~ik~e~P~~s~~eisK~lge~Wk~Ls~eeK~~Y~~kA~~~k~rY~~em~~Y~ 622 (764)
||||+||||+|++..|..|+.+ |+++++|+|++|++|+.|++ |.+|+++|+.+|+||+.+|++|+
T Consensus 536 pkra~sa~m~w~~~~r~~ik~d--gi~~~dv~kk~g~~wk~ms~--k~~we~ka~~dk~ry~~em~~yk 600 (615)
T KOG0526|consen 536 PKRATSAYMLWLNASRESIKED--GISVGDVAKKAGEKWKQMSA--KEEWEDKAAVDKQRYEDEMKEYK 600 (615)
T ss_pred CccchhHHHHHHHhhhhhHhhc--CchHHHHHHHHhHHHhhhcc--cchhhHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999998 99999999999999999999 99999999999999999999999
|
|
| >COG5165 POB3 Nucleosome-binding factor SPN, POB3 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF03531 SSrecog: Structure-specific recognition protein (SSRP1); InterPro: IPR000969 Human structure-specific recognition protein, SSRP1, [] binds specifically to DNA modified with the anti-cancer drug cisplatin | Back alignment and domain information |
|---|
| >KOG1189|consensus | Back alignment and domain information |
|---|
| >COG5406 Nucleosome binding factor SPN, SPT16 subunit [Transcription / DNA replication, recombination, and repair / Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families | Back alignment and domain information |
|---|
| >PTZ00199 high mobility group protein; Provisional | Back alignment and domain information |
|---|
| >cd01389 MATA_HMG-box MATA_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >cd01388 SOX-TCF_HMG-box SOX-TCF_HMG-box, class I member of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF00505 HMG_box: HMG (high mobility group) box; InterPro: IPR000910 High mobility group (HMG or HMGB) proteins are a family of relatively low molecular weight non-histone components in chromatin | Back alignment and domain information |
|---|
| >cd01390 HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins | Back alignment and domain information |
|---|
| >smart00398 HMG high mobility group | Back alignment and domain information |
|---|
| >PF09011 HMG_box_2: HMG-box domain; InterPro: IPR015101 This domain is predominantly found in Maelstrom homologue proteins | Back alignment and domain information |
|---|
| >KOG0381|consensus | Back alignment and domain information |
|---|
| >KOG0527|consensus | Back alignment and domain information |
|---|
| >cd00084 HMG-box High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and transcription factors | Back alignment and domain information |
|---|
| >KOG3248|consensus | Back alignment and domain information |
|---|
| >KOG4715|consensus | Back alignment and domain information |
|---|
| >KOG0528|consensus | Back alignment and domain information |
|---|
| >PF14887 HMG_box_5: HMG (high mobility group) box 5; PDB: 1L8Y_A 1L8Z_A 2HDZ_A | Back alignment and domain information |
|---|
| >KOG2746|consensus | Back alignment and domain information |
|---|
| >PF14470 bPH_3: Bacterial PH domain | Back alignment and domain information |
|---|
| >PF06382 DUF1074: Protein of unknown function (DUF1074); InterPro: IPR024460 This family consists of several proteins which appear to be specific to Insecta | Back alignment and domain information |
|---|
| >PF04690 YABBY: YABBY protein; InterPro: IPR006780 YABBY proteins are a group of plant-specific transcription factors involved in the specification of abaxial polarity in lateral organs such as leaves and floral organs [, ] | Back alignment and domain information |
|---|
| >COG5648 NHP6B Chromatin-associated proteins containing the HMG domain [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
| >PF08512 Rtt106: Histone chaperone Rttp106-like; InterPro: IPR013719 This is a domain of unknown function that is associated with a number of different protein families | Back alignment and domain information |
|---|
| >PF08073 CHDNT: CHDNT (NUC034) domain; InterPro: IPR012958 The CHD N-terminal domain is found in PHD/RING fingers and chromo domain-associated helicases [] | Back alignment and domain information |
|---|
| >KOG1189|consensus | Back alignment and domain information |
|---|
| >PF14470 bPH_3: Bacterial PH domain | Back alignment and domain information |
|---|
| >PF05764 YL1: YL1 nuclear protein; InterPro: IPR008895 The proteins in this family are designated YL1 [] | Back alignment and domain information |
|---|
| >KOG1832|consensus | Back alignment and domain information |
|---|
| >PF04769 MAT_Alpha1: Mating-type protein MAT alpha 1; InterPro: IPR006856 This family includes Saccharomyces cerevisiae (Baker's yeast) mating type protein alpha 1 (P01365 from SWISSPROT) | Back alignment and domain information |
|---|
| >KOG0526|consensus | Back alignment and domain information |
|---|
| >PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity | Back alignment and domain information |
|---|
| >PF06244 DUF1014: Protein of unknown function (DUF1014); InterPro: IPR010422 This family consists of several hypothetical eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
| >PF04283 CheF-arch: Chemotaxis signal transduction system protein F from archaea; InterPro: IPR007381 This is an archaeal protein of unknown function | Back alignment and domain information |
|---|
| >COG0779 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 764 | ||||
| 2gcj_A | 261 | Crystal Structure Of The Pob3 Middle Domain Length | 3e-52 | ||
| 2gcl_A | 261 | Structure Of The Pob3 Middle Domain Length = 261 | 9e-52 | ||
| 1qrv_A | 73 | Crystal Structure Of The Complex Of Hmg-D And Dna L | 2e-15 | ||
| 1e7j_A | 74 | Hmg-D Complexed To A Bulge Dna Length = 74 | 2e-15 | ||
| 1hma_A | 73 | The Solution Structure And Dynamics Of The Dna Bind | 2e-15 | ||
| 3nm9_A | 73 | Hmgd(M13a)-Dna Complex Length = 73 | 1e-14 | ||
| 3f5r_A | 191 | The Crystal Structure Of A Subunit Of The Heterodim | 6e-13 | ||
| 1wxl_A | 73 | Solution Structure Of The Hmg-Box Domain In The Ssr | 4e-12 | ||
| 1j3d_A | 78 | Solution Structure Of The C-Terminal Domain Of The | 4e-08 | ||
| 1j3c_A | 79 | Solution Structure Of The C-Terminal Domain Of The | 4e-08 | ||
| 2yqi_A | 81 | Solution Structure Of The Second Hmg-Box Domain Fro | 3e-07 | ||
| 1cg7_A | 93 | Hmg Protein Nhp6a From Saccharomyces Cerevisiae Len | 4e-06 | ||
| 2eqz_A | 86 | Solution Structure Of The First Hmg-Box Domain From | 5e-06 | ||
| 1j5n_A | 93 | Solution Structure Of The Non-Sequence-Specific Hmg | 5e-06 | ||
| 1nhm_A | 81 | The Structure Of The Hmg Box And Its Interaction Wi | 3e-05 | ||
| 1hme_A | 77 | Structure Of The Hmg Box Motif In The B-Domain Of H | 3e-05 | ||
| 1hsm_A | 79 | The Structure Of The Hmg Box And Its Interaction Wi | 3e-05 | ||
| 1ckt_A | 71 | Crystal Structure Of Hmg1 Domain A Bound To A Cispl | 6e-05 | ||
| 2ly4_A | 83 | Hmgb1-Facilitated P53 Dna Binding Occurs Via Hmg-Bo | 7e-05 | ||
| 2yrq_A | 173 | Solution Structure Of The Tandem Hmg Box Domain Fro | 8e-05 | ||
| 1aab_A | 83 | Nmr Structure Of Rat Hmg1 Hmga Fragment Length = 83 | 1e-04 | ||
| 1hrz_A | 76 | The 3d Structure Of The Human Sry-Dna Complex Solve | 1e-04 | ||
| 1j46_A | 85 | 3d Solution Nmr Structure Of The Wild Type Hmg-Box | 1e-04 | ||
| 2gzk_A | 159 | Structure Of A Complex Of Tandem Hmg Boxes And Dna | 2e-04 | ||
| 4a3n_A | 71 | Crystal Structure Of Hmg-Box Of Human Sox17 Length | 2e-04 | ||
| 2yul_A | 82 | Solution Structure Of The Hmg Box Of Human Transcri | 2e-04 | ||
| 3f27_D | 83 | Structure Of Sox17 Bound To Dna Length = 83 | 3e-04 | ||
| 1o4x_B | 88 | Ternary Complex Of The Dna Binding Domains Of The O | 5e-04 | ||
| 1j47_A | 85 | 3d Solution Nmr Structure Of The M9i Mutant Of The | 5e-04 | ||
| 2co9_A | 102 | Solution Structure Of The Hmg_box Domain Of Thymus | 5e-04 | ||
| 1j3x_A | 77 | Solution Structure Of The N-Terminal Domain Of The | 5e-04 | ||
| 2le4_A | 81 | Solution Structure Of The Hmg Box Dna-Binding Domai | 8e-04 | ||
| 1gt0_D | 80 | Crystal Structure Of A PouHMGDNA TERNARY COMPLEX Le | 8e-04 |
| >pdb|2GCJ|A Chain A, Crystal Structure Of The Pob3 Middle Domain Length = 261 | Back alignment and structure |
|
| >pdb|2GCL|A Chain A, Structure Of The Pob3 Middle Domain Length = 261 | Back alignment and structure |
| >pdb|1QRV|A Chain A, Crystal Structure Of The Complex Of Hmg-D And Dna Length = 73 | Back alignment and structure |
| >pdb|1E7J|A Chain A, Hmg-D Complexed To A Bulge Dna Length = 74 | Back alignment and structure |
| >pdb|1HMA|A Chain A, The Solution Structure And Dynamics Of The Dna Binding Domain Of Hmg-D From Drosophila Melanogaster Length = 73 | Back alignment and structure |
| >pdb|3NM9|A Chain A, Hmgd(M13a)-Dna Complex Length = 73 | Back alignment and structure |
| >pdb|3F5R|A Chain A, The Crystal Structure Of A Subunit Of The Heterodimeric Fact Complex (Spt16p-Pob3p) Length = 191 | Back alignment and structure |
| >pdb|1WXL|A Chain A, Solution Structure Of The Hmg-Box Domain In The Ssrp1 Subunit Of Fact Length = 73 | Back alignment and structure |
| >pdb|1J3D|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2 Length = 78 | Back alignment and structure |
| >pdb|1J3C|A Chain A, Solution Structure Of The C-Terminal Domain Of The Hmgb2 Length = 79 | Back alignment and structure |
| >pdb|2YQI|A Chain A, Solution Structure Of The Second Hmg-Box Domain From High Mobility Group Protein B3 Length = 81 | Back alignment and structure |
| >pdb|1CG7|A Chain A, Hmg Protein Nhp6a From Saccharomyces Cerevisiae Length = 93 | Back alignment and structure |
| >pdb|2EQZ|A Chain A, Solution Structure Of The First Hmg-Box Domain From High Mobility Group Protein B3 Length = 86 | Back alignment and structure |
| >pdb|1J5N|A Chain A, Solution Structure Of The Non-Sequence-Specific Hmgb Protein Nhp6a In Complex With Sry Dna Length = 93 | Back alignment and structure |
| >pdb|1NHM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna Length = 81 | Back alignment and structure |
| >pdb|1HME|A Chain A, Structure Of The Hmg Box Motif In The B-Domain Of Hmg1 Length = 77 | Back alignment and structure |
| >pdb|1HSM|A Chain A, The Structure Of The Hmg Box And Its Interaction With Dna Length = 79 | Back alignment and structure |
| >pdb|1CKT|A Chain A, Crystal Structure Of Hmg1 Domain A Bound To A Cisplatin-modified Dna Duplex Length = 71 | Back alignment and structure |
| >pdb|2LY4|A Chain A, Hmgb1-Facilitated P53 Dna Binding Occurs Via Hmg-BoxP53 Transactivation Domain Interaction And Is Regulated By The Acidic Tail Length = 83 | Back alignment and structure |
| >pdb|2YRQ|A Chain A, Solution Structure Of The Tandem Hmg Box Domain From Human High Mobility Group Protein B1 Length = 173 | Back alignment and structure |
| >pdb|1AAB|A Chain A, Nmr Structure Of Rat Hmg1 Hmga Fragment Length = 83 | Back alignment and structure |
| >pdb|1HRZ|A Chain A, The 3d Structure Of The Human Sry-Dna Complex Solved By Multi-Dimensional Heteronuclear-Edited And-Filtered Nmr Length = 76 | Back alignment and structure |
| >pdb|1J46|A Chain A, 3d Solution Nmr Structure Of The Wild Type Hmg-Box Domain Of The Human Male Sex Determining Factor Sry Complexed To Dna Length = 85 | Back alignment and structure |
| >pdb|2GZK|A Chain A, Structure Of A Complex Of Tandem Hmg Boxes And Dna Length = 159 | Back alignment and structure |
| >pdb|4A3N|A Chain A, Crystal Structure Of Hmg-Box Of Human Sox17 Length = 71 | Back alignment and structure |
| >pdb|2YUL|A Chain A, Solution Structure Of The Hmg Box Of Human Transcription Factor Sox-17 Length = 82 | Back alignment and structure |
| >pdb|3F27|D Chain D, Structure Of Sox17 Bound To Dna Length = 83 | Back alignment and structure |
| >pdb|1O4X|B Chain B, Ternary Complex Of The Dna Binding Domains Of The Oct1 And Sox2 Transcription Factors With A 19mer Oligonucleotide From The Hoxb1 Regulatory Element Length = 88 | Back alignment and structure |
| >pdb|1J47|A Chain A, 3d Solution Nmr Structure Of The M9i Mutant Of The Hmg-Box Domain Of The Human Male Sex Determining Factor Sry Complexed To Dna Length = 85 | Back alignment and structure |
| >pdb|2CO9|A Chain A, Solution Structure Of The Hmg_box Domain Of Thymus High Mobility Group Box Protein Tox From Mouse Length = 102 | Back alignment and structure |
| >pdb|1J3X|A Chain A, Solution Structure Of The N-Terminal Domain Of The Hmgb2 Length = 77 | Back alignment and structure |
| >pdb|2LE4|A Chain A, Solution Structure Of The Hmg Box Dna-Binding Domain Of Human Stem Cell Transcription Factor Sox2 Length = 81 | Back alignment and structure |
| >pdb|1GT0|D Chain D, Crystal Structure Of A PouHMGDNA TERNARY COMPLEX Length = 80 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A Length = 261 | Back alignment and structure |
|---|
Score = 295 bits (755), Expect = 8e-95
Identities = 97/259 (37%), Positives = 162/259 (62%), Gaps = 4/259 (1%)
Query: 177 DPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIP 236
EAF + + +A + GDAI F ++ TPRGRYDI I+ + +L GKT++YK+
Sbjct: 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQ 61
Query: 237 ISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELK 296
+ R+ +LP D + V++++PP++QGQT Y FL L F +DE +E++L +++ +
Sbjct: 62 HRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYE 121
Query: 297 EKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPL 356
E Y+ KL K+ T+ V++ ++K + +R++ VPG ++ AV+CS+KA GY+YPL
Sbjct: 122 ENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPL 181
Query: 357 ERGFIFIHKPPIHIRFEEIATVNFARSGGS---TRSFDFEIELKSG-VLHTFSSIEKEEY 412
+ F F+ KP ++I F +++ VN +R+G + +R+FD E+ L+S TF++I KEE
Sbjct: 182 DNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241
Query: 413 GKLFDFIREKKLRVKNTGK 431
L F++ K LRVKN +
Sbjct: 242 QLLEQFLKSKNLRVKNEDR 260
|
| >3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A Length = 237 | Back alignment and structure |
|---|
| >3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} Length = 191 | Back alignment and structure |
|---|
| >2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus} Length = 102 | Back alignment and structure |
|---|
| >1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A Length = 93 | Back alignment and structure |
|---|
| >2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus} Length = 92 | Back alignment and structure |
|---|
| >1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 Length = 99 | Back alignment and structure |
|---|
| >1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A Length = 77 | Back alignment and structure |
|---|
| >2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis} Length = 97 | Back alignment and structure |
|---|
| >2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 86 | Back alignment and structure |
|---|
| >1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 Length = 83 | Back alignment and structure |
|---|
| >3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} PDB: 1e7j_A* 1hma_A 1qrv_A* Length = 73 | Back alignment and structure |
|---|
| >1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster} Length = 73 | Back alignment and structure |
|---|
| >2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 92 | Back alignment and structure |
|---|
| >1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1 Length = 90 | Back alignment and structure |
|---|
| >3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
| >3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens} Length = 214 | Back alignment and structure |
|---|
| >2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 173 | Back alignment and structure |
|---|
| >2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 173 | Back alignment and structure |
|---|
| >3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} Length = 238 | Back alignment and structure |
|---|
| >3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} Length = 238 | Back alignment and structure |
|---|
| >1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A Length = 71 | Back alignment and structure |
|---|
| >2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1 Length = 159 | Back alignment and structure |
|---|
| >2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1 Length = 159 | Back alignment and structure |
|---|
| >3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens} Length = 67 | Back alignment and structure |
|---|
| >1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1 Length = 108 | Back alignment and structure |
|---|
| >1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1 Length = 101 | Back alignment and structure |
|---|
| >2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens} Length = 87 | Back alignment and structure |
|---|
| >2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81 | Back alignment and structure |
|---|
| >1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus} Length = 82 | Back alignment and structure |
|---|
| >4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens} Length = 106 | Back alignment and structure |
|---|
| >4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} Length = 71 | Back alignment and structure |
|---|
| >1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A* Length = 76 | Back alignment and structure |
|---|
| >1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A Length = 85 | Back alignment and structure |
|---|
| >3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} Length = 79 | Back alignment and structure |
|---|
| >3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} PDB: 2yul_A Length = 83 | Back alignment and structure |
|---|
| >2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1 Length = 86 | Back alignment and structure |
|---|
| >1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B Length = 80 | Back alignment and structure |
|---|
| >1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1 Length = 81 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| 2gcl_A | 261 | Hypothetical 63.0 kDa protein in DAK1-ORC1 interge | 100.0 | |
| 3f5r_A | 191 | FACT complex subunit POB3; APC7736, FACT complex ( | 100.0 | |
| 3fss_A | 237 | Histone chaperone RTT106; chromosomal protein, nuc | 99.97 | |
| 2co9_A | 102 | Thymus high mobility group box protein TOX; TOX pr | 99.84 | |
| 2eqz_A | 86 | High mobility group protein B3; HMG-box domain, mo | 99.83 | |
| 1k99_A | 99 | Upstream binding factor 1; alpha-helix, L-shape, D | 99.82 | |
| 1hme_A | 77 | High mobility group protein fragment-B; DNA-bindin | 99.81 | |
| 1wgf_A | 90 | Upstream binding factor 1; transcription factor, D | 99.81 | |
| 1cg7_A | 93 | Protein (NON histone protein 6 A); HMG BOX, DNA be | 99.81 | |
| 2lhj_A | 97 | High mobility group protein homolog NHP1; structur | 99.8 | |
| 2crj_A | 92 | SWI/SNF-related matrix-associated actin- dependent | 99.8 | |
| 2cs1_A | 92 | PMS1 protein homolog 1; DNA mismatch repair protei | 99.8 | |
| 2e6o_A | 87 | HMG box-containing protein 1; HMG-box domain, HMG- | 99.8 | |
| 1aab_A | 83 | High mobility group protein; HMG-BOX, DNA-binding; | 99.8 | |
| 3nm9_A | 73 | HMG-D, high mobility group protein D; DNA bending, | 99.79 | |
| 1hry_A | 76 | Human SRY; DNA, DNA-binding protein, DNA binding p | 99.79 | |
| 1j46_A | 85 | SRY, sex-determining region Y protein; MALE sex de | 99.78 | |
| 1l8y_A | 91 | Upstream binding factor 1; HUBF, HMG box 5, DNA bi | 99.77 | |
| 1wxl_A | 73 | Single-strand recognition protein; FACT, SSRP1, HM | 99.77 | |
| 4euw_A | 106 | Transcription factor SOX-9; protein-DNA complex, H | 99.77 | |
| 1gt0_D | 80 | Transcription factor SOX-2; POU factors, SOX prote | 99.77 | |
| 1wz6_A | 82 | HMG-box transcription factor BBX; bobby SOX homolo | 99.76 | |
| 1ckt_A | 71 | High mobility group 1 protein; high-mobility group | 99.76 | |
| 3u2b_C | 79 | Transcription factor SOX-4; HMG domain, transcript | 99.75 | |
| 3f27_D | 83 | Transcription factor SOX-17; protein-DNA complex, | 99.75 | |
| 2lef_A | 86 | LEF-1 HMG, protein (lymphoid enhancer-binding fact | 99.75 | |
| 2gzk_A | 159 | Sex-determining region on Y / HMGB1; protein-DNA c | 99.75 | |
| 4a3n_A | 71 | Transcription factor SOX-17; 2.40A {Homo sapiens} | 99.75 | |
| 1i11_A | 81 | Transcription factor SOX-5; HMG BOX, DNA bending, | 99.73 | |
| 1v64_A | 108 | Nucleolar transcription factor 1; DNA binding, str | 99.73 | |
| 2yrq_A | 173 | High mobility group protein B1; HMG box domain, DN | 99.72 | |
| 2yrq_A | 173 | High mobility group protein B1; HMG box domain, DN | 99.71 | |
| 3fgh_A | 67 | Transcription factor A, mitochondrial; HMG domain, | 99.71 | |
| 1v63_A | 101 | Nucleolar transcription factor 1; DNA binding, str | 99.68 | |
| 2yuk_A | 90 | Myeloid/lymphoid or mixed-lineage leukemia protein | 99.67 | |
| 2d7l_A | 81 | WD repeat and HMG-box DNA binding protein 1; high | 99.66 | |
| 3tmm_A | 238 | Transcription factor A, mitochondrial; HMG, high m | 99.63 | |
| 2cto_A | 93 | Novel protein; high mobility group box domain, hel | 99.61 | |
| 3tq6_A | 214 | Transcription factor A, mitochondrial; transcripti | 99.61 | |
| 3tq6_A | 214 | Transcription factor A, mitochondrial; transcripti | 99.58 | |
| 3tmm_A | 238 | Transcription factor A, mitochondrial; HMG, high m | 99.56 | |
| 2gzk_A | 159 | Sex-determining region on Y / HMGB1; protein-DNA c | 99.55 | |
| 3f5r_A | 191 | FACT complex subunit POB3; APC7736, FACT complex ( | 95.83 | |
| 2gcl_A | 261 | Hypothetical 63.0 kDa protein in DAK1-ORC1 interge | 92.93 | |
| 3fss_A | 237 | Histone chaperone RTT106; chromosomal protein, nuc | 88.99 | |
| 1y5o_A | 115 | TFB1, RNA polymerase II transcription factor B 73 | 85.29 |
| >2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-76 Score=616.70 Aligned_cols=255 Identities=38% Similarity=0.746 Sum_probs=227.5
Q ss_pred ChHHHHHHHHhcccccccccCceeEEEcceeeecCCcceEEEEeccceEEeeccceeeeecCCeeeEEeeecCCCceEEE
Q psy2633 177 DPVEAFKDSVMNQASVINATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFF 256 (764)
Q Consensus 177 ~~~~~f~~~i~~~a~i~~~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~ 256 (764)
++|++|+++||++|+|++++|++||+|.+|+|+||||||+|+||.++|||||+||||+|+|++|+|+||||+|+++|++|
T Consensus 2 ~~~~~~~~~i~~ka~i~~~~gd~i~~~~dv~~ltPRGrydi~~~~~~lrl~gkt~dyki~~~~I~r~f~LP~pd~~~~~~ 81 (261)
T 2gcl_A 2 HMAEAFYEELKEKADIGEVAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMM 81 (261)
T ss_dssp ------------------CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEE
T ss_pred cHHHHHHHHHHhhccccccCCceEEEEcCceEEcCCCceEEEEecCcEEEeCCcccceechhhEEEEEEccCCCcCceEE
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeccCCcccCCCccceeEEEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhcceeeccCCCcccC
Q psy2633 257 VISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGH 336 (764)
Q Consensus 257 vi~L~~PIrqGqtky~~lv~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~~~ki~~P~~F~s~ 336 (764)
||.|+||||||||+|+||||||.++++++++||+++++++++|+++|.++|+|++|+||+++|++|+|++|++|+.|.|+
T Consensus 82 vi~ld~PirqGqt~y~~lV~qf~~~e~~~~~ln~~~~~~~~ky~~~L~~~~~g~~~~vv~~ilk~l~g~kv~~P~~F~S~ 161 (261)
T 2gcl_A 82 VMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSK 161 (261)
T ss_dssp EEEEEEEEEETTEEEEEEEEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCT
T ss_pred EEecCCCccCCCccCCeEEEEEeCCCceEeeecCCHHHHhhhhccccccccCCcHHHHHHHHHHHhcCCeeecCCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeeecCceeEEEecCCceeeeccCCeEEecCCeeEEEEEee-cC--ccceEeEEEEEcCC-ceEEEeccchhhH
Q psy2633 337 TGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEIATVNFARS-GG--STRSFDFEIELKSG-VLHTFSSIEKEEY 412 (764)
Q Consensus 337 ~g~~~V~cs~ka~~G~LyPL~~~lifl~KPp~~I~~~eIe~V~feR~-~~--~~rtFDm~i~~K~~-~~~~Fs~I~~eE~ 412 (764)
.|++||+|++||++|+||||++||||+||||+||+|++|++|+|+|+ ++ ++|||||+|++|+| ++|+|+||+|+||
T Consensus 162 ~~~~~Vkcs~ka~eG~LypL~~gflF~~KP~~~i~~~~I~sV~fsrvg~~~~~~rTFdl~v~~k~g~~~~~Fs~IdreE~ 241 (261)
T 2gcl_A 162 YDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQ 241 (261)
T ss_dssp TSCSCEEEEETTEEEEEEECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGH
T ss_pred CCCceEEEeccCCceEEEEecCceEEeeCCcEEEEhhHeeEEEEEeccCCcccCceEEEEEEEcCCCccEEEcccCHHHH
Confidence 99999999999999999999999999999999999999999999994 33 78999999999998 9999999999999
Q ss_pred hhHHHHHhhcCceeeecCC
Q psy2633 413 GKLFDFIREKKLRVKNTGK 431 (764)
Q Consensus 413 ~~L~~~l~~k~i~I~n~~~ 431 (764)
.+|.+||++|+|+|+|.+.
T Consensus 242 ~~L~~ylk~k~l~ikn~~~ 260 (261)
T 2gcl_A 242 QLLEQFLKSKNLRVKNEDR 260 (261)
T ss_dssp HHHHHHHHHTTCCEEC---
T ss_pred HHHHHHHHHcCCeeecCCC
Confidence 9999999999999999653
|
| >3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A | Back alignment and structure |
|---|
| >2co9_A Thymus high mobility group box protein TOX; TOX protein, HMG box domain, structural genomics, NPPSFA; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2eqz_A High mobility group protein B3; HMG-box domain, mobility group protein 2A, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1k99_A Upstream binding factor 1; alpha-helix, L-shape, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >1hme_A High mobility group protein fragment-B; DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1hmf_A 1nhm_A 1nhn_A 1hsm_A 1hsn_A 1j3c_A 1j3d_A 2yqi_A | Back alignment and structure |
|---|
| >1wgf_A Upstream binding factor 1; transcription factor, DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >1cg7_A Protein (NON histone protein 6 A); HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.21.1.1 PDB: 1j5n_A 1lwm_A | Back alignment and structure |
|---|
| >2lhj_A High mobility group protein homolog NHP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid; NMR {Babesia bovis} | Back alignment and structure |
|---|
| >2crj_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; structural DNA-binding protein BRAF35, DNA-bending; NMR {Mus musculus} | Back alignment and structure |
|---|
| >2cs1_A PMS1 protein homolog 1; DNA mismatch repair protein PMS1, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2e6o_A HMG box-containing protein 1; HMG-box domain, HMG-box transcription factor 1, high mobility group box transcription factor 1, structural genomics; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >1aab_A High mobility group protein; HMG-BOX, DNA-binding; NMR {Rattus norvegicus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >3nm9_A HMG-D, high mobility group protein D; DNA bending, non-sequence-specific, HMG chromosomal protein; HET: DNA; 2.85A {Drosophila melanogaster} SCOP: a.21.1.1 PDB: 1e7j_A* 1hma_A 1qrv_A* | Back alignment and structure |
|---|
| >1hry_A Human SRY; DNA, DNA-binding protein, DNA binding protein/DNA complex; HET: DNA; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1hrz_A* | Back alignment and structure |
|---|
| >1j46_A SRY, sex-determining region Y protein; MALE sex determining factor, SRY, sex-reversal mutation; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1j47_A | Back alignment and structure |
|---|
| >1l8y_A Upstream binding factor 1; HUBF, HMG box 5, DNA binding domain, DNA binding protein; NMR {Homo sapiens} SCOP: a.21.1.1 PDB: 1l8z_A 2hdz_A | Back alignment and structure |
|---|
| >1wxl_A Single-strand recognition protein; FACT, SSRP1, HMG, DNA binding protein; NMR {Drosophila melanogaster} | Back alignment and structure |
|---|
| >4euw_A Transcription factor SOX-9; protein-DNA complex, HMG domain, activator, DNA-binding, NUC transcription; HET: DNA; 2.77A {Homo sapiens} | Back alignment and structure |
|---|
| >1gt0_D Transcription factor SOX-2; POU factors, SOX proteins; 2.6A {Mus musculus} SCOP: a.21.1.1 PDB: 2le4_A 1o4x_B | Back alignment and structure |
|---|
| >1wz6_A HMG-box transcription factor BBX; bobby SOX homolog, HMG_BOX domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative; NMR {Mus musculus} | Back alignment and structure |
|---|
| >1ckt_A High mobility group 1 protein; high-mobility group domain, BENT DNA, protein-drug-DNA compl regulation-DNA complex; HET: DNA 5IU; 2.50A {Rattus norvegicus} SCOP: a.21.1.1 PDB: 1j3x_A | Back alignment and structure |
|---|
| >3u2b_C Transcription factor SOX-4; HMG domain, transcriptional regulation, transcription-DNA CO; HET: DNA; 2.40A {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >3f27_D Transcription factor SOX-17; protein-DNA complex, HMG domain, endodermal, activator, DNA- nucleus, transcription regulation, transcrip complex; HET: DNA; 2.75A {Mus musculus} SCOP: a.21.1.1 PDB: 2yul_A | Back alignment and structure |
|---|
| >2lef_A LEF-1 HMG, protein (lymphoid enhancer-binding factor); LEF1, HMG, TCR-A, transcription factor; HET: DNA; NMR {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1 | Back alignment and structure |
|---|
| >4a3n_A Transcription factor SOX-17; 2.40A {Homo sapiens} SCOP: a.21.1.0 | Back alignment and structure |
|---|
| >1i11_A Transcription factor SOX-5; HMG BOX, DNA bending, DNA recognition, chromatin, DNA binding protein, DNA sequence specific, testis determining.; NMR {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >1v64_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2yrq_A High mobility group protein B1; HMG box domain, DNA binding, helix-turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3fgh_A Transcription factor A, mitochondrial; HMG domain, mitochondrial transcription, activator, DNA- binding, mitochondrion, phosphoprotein; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
| >1v63_A Nucleolar transcription factor 1; DNA binding, structural genomics, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: a.21.1.1 | Back alignment and structure |
|---|
| >2yuk_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >2d7l_A WD repeat and HMG-box DNA binding protein 1; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2cto_A Novel protein; high mobility group box domain, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
| >3tq6_A Transcription factor A, mitochondrial; transcription, transcription regulation, mitochondrion; HET: DNA BRU 1PE; 2.45A {Homo sapiens} | Back alignment and structure |
|---|
| >3tmm_A Transcription factor A, mitochondrial; HMG, high mobility group, transcription, LSP1, mitochon transcription-DNA complex; HET: DNA; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2gzk_A Sex-determining region on Y / HMGB1; protein-DNA complex, HMG BOX, amphoterin, DNA/structural protein complex; NMR {Homo sapiens} SCOP: a.21.1.1 a.21.1.1 | Back alignment and structure |
|---|
| >3f5r_A FACT complex subunit POB3; APC7736, FACT complex (SPT16P-POB3P), saccharomyces cerevisi structural genomics, PSI-2; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >2gcl_A Hypothetical 63.0 kDa protein in DAK1-ORC1 intergenic region; chromaint, double PH domain, yfact, DNA replication, RPA; 2.21A {Saccharomyces cerevisiae} SCOP: b.55.1.10 PDB: 2gcj_A | Back alignment and structure |
|---|
| >3fss_A Histone chaperone RTT106; chromosomal protein, nucleus, phosphoprotein, transcription, transcription regulation, transposition; 1.43A {Saccharomyces cerevisiae} PDB: 3tw1_A* 3tvv_A* 3gyp_A 3gyo_A 3to1_A | Back alignment and structure |
|---|
| >1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A* | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 764 | ||||
| d2gcla1 | 238 | b.55.1.10 (A:237-474) FACT complex subunit POB3, m | 6e-89 | |
| d1lwma_ | 93 | a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces | 6e-22 | |
| d1hsma_ | 79 | a.21.1.1 (A:) High mobility group protein 1, HMG1 | 9e-22 | |
| d1k99a_ | 91 | a.21.1.1 (A:) Nucleolar transcription factor 1 (Up | 3e-20 | |
| d1qrva_ | 73 | a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxI | 9e-20 | |
| d1wgfa_ | 90 | a.21.1.1 (A:) Nucleolar transcription factor 1 (Up | 7e-18 | |
| d1gt0d_ | 80 | a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: | 5e-17 | |
| d1v63a_ | 101 | a.21.1.1 (A:) Nucleolar transcription factor 1 (Up | 7e-17 | |
| d1j46a_ | 85 | a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 96 | 1e-16 | |
| d1ckta_ | 71 | a.21.1.1 (A:) High mobility group protein 1, HMG1 | 1e-16 | |
| d2lefa_ | 86 | a.21.1.1 (A:) Lymphoid enhancer-binding factor, LE | 2e-15 | |
| d1i11a_ | 70 | a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: | 1e-14 | |
| d1v64a_ | 108 | a.21.1.1 (A:) Nucleolar transcription factor 1 (Up | 2e-14 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 238 | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 277 bits (710), Expect = 6e-89
Identities = 94/237 (39%), Positives = 153/237 (64%), Gaps = 4/237 (1%)
Query: 196 TGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNF 255
GDAI F ++ TPRGRYDI I+ + +L GKT++YK+ + R+ +LP D +
Sbjct: 2 AGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHM 61
Query: 256 FVISLDPPIKQGQTRYHFLTLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVM 315
V++++PP++QGQT Y FL L F +DE +E++L +++ +E Y+ KL K+ T+ V+
Sbjct: 62 MVMAIEPPLRQGQTTYPFLVLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVL 121
Query: 316 AKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIYPLERGFIFIHKPPIHIRFEEI 375
+ ++K + +R++ VPG ++ AV+CS+KA GY+YPL+ F F+ KP ++I F ++
Sbjct: 122 SHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLYPLDNAFFFLTKPTLYIPFSDV 181
Query: 376 ATVNFARSGG---STRSFDFEIELKSGVL-HTFSSIEKEEYGKLFDFIREKKLRVKN 428
+ VN +R+G S+R+FD E+ L+S TF++I KEE L F++ K LRVKN
Sbjct: 182 SMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN 238
|
| >d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 93 | Back information, alignment and structure |
|---|
| >d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 79 | Back information, alignment and structure |
|---|
| >d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 91 | Back information, alignment and structure |
|---|
| >d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]} Length = 73 | Back information, alignment and structure |
|---|
| >d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 90 | Back information, alignment and structure |
|---|
| >d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80 | Back information, alignment and structure |
|---|
| >d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 101 | Back information, alignment and structure |
|---|
| >d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]} Length = 85 | Back information, alignment and structure |
|---|
| >d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71 | Back information, alignment and structure |
|---|
| >d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 86 | Back information, alignment and structure |
|---|
| >d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]} Length = 70 | Back information, alignment and structure |
|---|
| >d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} Length = 108 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 764 | |||
| d2gcla1 | 238 | FACT complex subunit POB3, middle domain {Baker's | 100.0 | |
| d1lwma_ | 93 | NHP6a {Baker's yeast (Saccharomyces cerevisiae) [T | 99.8 | |
| d1hsma_ | 79 | High mobility group protein 1, HMG1 {Hamster (Cric | 99.79 | |
| d1gt0d_ | 80 | Sox-2 {Mouse (Mus musculus) [TaxId: 10090]} | 99.78 | |
| d1k99a_ | 91 | Nucleolar transcription factor 1 (Upstream binding | 99.77 | |
| d1j46a_ | 85 | SRY {Human (Homo sapiens) [TaxId: 9606]} | 99.76 | |
| d1qrva_ | 73 | HMG-D {Drosophila melanogaster [TaxId: 7227]} | 99.75 | |
| d2lefa_ | 86 | Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus | 99.72 | |
| d1ckta_ | 71 | High mobility group protein 1, HMG1 {Rat (Rattus n | 99.72 | |
| d1i11a_ | 70 | Sox-5 {Mouse (Mus musculus) [TaxId: 10090]} | 99.71 | |
| d1wgfa_ | 90 | Nucleolar transcription factor 1 (Upstream binding | 99.69 | |
| d1v64a_ | 108 | Nucleolar transcription factor 1 (Upstream binding | 99.62 | |
| d1v63a_ | 101 | Nucleolar transcription factor 1 (Upstream binding | 99.6 | |
| d1l8ya_ | 84 | Nucleolar transcription factor 1 (Upstream binding | 97.23 | |
| d2gcla1 | 238 | FACT complex subunit POB3, middle domain {Baker's | 93.96 | |
| d2rnrb1 | 108 | TFIIH basal transcription factor complex p62 subun | 93.23 | |
| d1wkya1 | 151 | Endo-beta-1,4-mannanase C-terminal domain {Bacillu | 84.26 |
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: PH domain-like barrel superfamily: PH domain-like family: SSRP1-like domain: FACT complex subunit POB3, middle domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.9e-70 Score=563.11 Aligned_cols=234 Identities=40% Similarity=0.795 Sum_probs=225.4
Q ss_pred ccCceeEEEcceeeecCCcceEEEEeccceEEeeccceeeeecCCeeeEEeeecCCCceEEEEeccCCcccCCCccceeE
Q psy2633 195 ATGDAIAVFNEIQCLTPRGRYDIKIFNSFFQLHGKTFDYKIPISTVLRMFTLPHKDGRQNFFVISLDPPIKQGQTRYHFL 274 (764)
Q Consensus 195 ~~g~~i~~f~~i~~ltPRGry~i~~~~~~lrl~gkt~d~kI~y~nI~r~F~lP~~d~~~~~~vi~L~~PIrqGqtky~~l 274 (764)
++|++||+|.+|+|+||||||+|+||.++|||||++|||+|+|+||+|+||||||+++|+++||||+||||||||+|+|+
T Consensus 1 ~~g~~i~~~~dv~~~~PRgk~~i~~~~~~lrl~g~~~d~~I~~~~I~~~f~lP~p~~~~~~~~~~L~ppi~~G~t~y~~~ 80 (238)
T d2gcla1 1 VAGDAIVSFQDVFFTTPRGRYDIDIYKNSIRLRGKTYEYKLQHRQIQRIVSLPKADDIHHMMVMAIEPPLRQGQTTYPFL 80 (238)
T ss_dssp CCTTSSEEEEEEEEEETTEEEEEEECSSEEEEEESSCEEEEEGGGEEEEEEEECTTSSEEEEEEEEEEEEEETTEEEEEE
T ss_pred CCCcEEEEEeCceEEcCCCceEEEEecCeEEEECCccceEEEhhheeEEEEccCCCCceEEEEEEecChhhcCCccCceE
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCcccccCCCHHHHHHHHhhhhhhccCCcHHHHHHHHHHHhcceeeccCCCcccCCCcceeeeeecCceeEEE
Q psy2633 275 TLLFNQDETSEMELPFSEQELKEKYEGKLDKELSGPTYEVMAKIMKVIVNRKITVPGSFRGHTGTSAVTCSYKAAAGYIY 354 (764)
Q Consensus 275 v~qF~~eee~~~~l~~~~e~l~~k~~~kL~~~~~g~~~ev~~~~~k~l~~~ki~~P~~F~s~~g~~~V~cs~ka~~G~Ly 354 (764)
|+||+++++++++|++++++++++|.++|+++|.|+++++|+++|++|+++++++|+.|.++.+++||+|++++++|+||
T Consensus 81 v~qf~~~e~~~~~l~~~~e~~~~~~~~~l~~~~~~~~~~~~~~~~k~l~~~kv~~p~~f~~~~~~~~v~~~~~~~~G~L~ 160 (238)
T d2gcla1 81 VLQFQKDEETEVQLNLEDEDYEENYKDKLKKQYDAKTHIVLSHVLKGLTDRRVIVPGEYKSKYDQCAVSCSFKANEGYLY 160 (238)
T ss_dssp EEEEETTCEEEEECCCCHHHHHHHTTTTCCSEEEEEHHHHHHHHHHHHHCCCEECCCSCCCTTSCSCEEEEETTEEEEEE
T ss_pred EEEEccCCCcEEEecCChHHHhhhhcchhhhhhcchHHHHHHHHHHHHhCcEecCCccccCCCCcceEEEeeccccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCceeeeccCCeEEecCCeeEEEEEeec---CccceEeEEEEEcCC-ceEEEeccchhhHhhHHHHHhhcCceeee
Q psy2633 355 PLERGFIFIHKPPIHIRFEEIATVNFARSG---GSTRSFDFEIELKSG-VLHTFSSIEKEEYGKLFDFIREKKLRVKN 428 (764)
Q Consensus 355 PL~~~lifl~KPp~~I~~~eIe~V~feR~~---~~~rtFDm~i~~K~~-~~~~Fs~I~~eE~~~L~~~l~~k~i~I~n 428 (764)
||++|||||+|||+||+|++|++|+|+|++ +++|||||+|++|++ ++|+|+||||+||++|++||++|+|+|+|
T Consensus 161 pl~~~llf~~KP~~~i~~~eI~~V~f~Rv~~~~~~~rtFD~~v~~k~~~~~~~fs~I~~~e~~~i~~~l~~~~ikikn 238 (238)
T d2gcla1 161 PLDNAFFFLTKPTLYIPFSDVSMVNISRAGQTSTSSRTFDLEVVLRSNRGSTTFANISKEEQQLLEQFLKSKNLRVKN 238 (238)
T ss_dssp ECSSEEEEESSSCEEEEGGGEEEEEEEC--------CEEEEEEEESTTCCEEEEEEEEGGGHHHHHHHHHHTTCCEEC
T ss_pred EccCeEEEecCCcEEEEehhEeEEEEEeecCCccccceeeEEEEEeCCCccEEEeccCHHHHHHHHHHHHHCCCcccC
Confidence 999999999999999999999999999964 358999999999986 48999999999999999999999999997
|
| >d1lwma_ a.21.1.1 (A:) NHP6a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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| >d1hsma_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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| >d1gt0d_ a.21.1.1 (D:) Sox-2 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1k99a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1j46a_ a.21.1.1 (A:) SRY {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qrva_ a.21.1.1 (A:) HMG-D {Drosophila melanogaster [TaxId: 7227]} | Back information, alignment and structure |
|---|
| >d2lefa_ a.21.1.1 (A:) Lymphoid enhancer-binding factor, LEF1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1ckta_ a.21.1.1 (A:) High mobility group protein 1, HMG1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
| >d1i11a_ a.21.1.1 (A:) Sox-5 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1wgfa_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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| >d1v64a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1v63a_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
| >d1l8ya_ a.21.1.1 (A:) Nucleolar transcription factor 1 (Upstream binding factor 1, UBF-1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d2gcla1 b.55.1.10 (A:237-474) FACT complex subunit POB3, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
| >d2rnrb1 b.55.1.9 (B:1-108) TFIIH basal transcription factor complex p62 subunit (BTF2-p62), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1wkya1 b.18.1.31 (A:340-490) Endo-beta-1,4-mannanase C-terminal domain {Bacillus sp. JAMB-602 [TaxId: 244966]} | Back information, alignment and structure |
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