Psyllid ID: psy2753

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQV
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHccccccEEEEEEccccccEEEEcccccHHHHHHHHcccccEEEEEEcccccccccccEEEEccccEEEEEEccccEEEEEEEcEEEEEEccccccEEEEEEEEEccEEEEEccccccccccHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHcccccEEEEEEEccccccEEEEcccHHHHHHHHHHcccccEEEEEEccccccccccEEEEEcccEEEEEEcccccEEEEEEcEEEEEEEEcccccEEEEEEEEEEcccEcccHHHHHcccHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
ESDNLWWDAFATEFFEDDATLTLTFcledgpkrytigrtlipRYFRSIFDGGITELYynlkhpkesfhntsitldcdqctmvthhgkpmltkvctegrlilEFTFDDLMRIKSWHFAVRQHrelvprtivgmqdpsMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSrhkayalsprdCLKTALFQKWQrmvappgkresqrpankrrkrkgsqsggaansappapskkrspgpnfslasqv
Flexible Loop (DISEMBL)
ESDNLWWDAFATEFFEDDATLTLTFcledgpkrytigrtlipryFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQrmvappgkresqrpankrrkrkgsqsggaansappapskkrspgpnfslasqv
Low Complexity Region (SEG)
ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRkgsqsggaansappapskkrspgpNFSLASQV
Disordered region (IsUnstruct)
****LWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRM***************************************************
Disordered Region (DISOPRED)
*SDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELV************************ITNSTLNYLRLCVILEPMQELMSRHKAY*L*PRDCLKTA***********************************************************
Disordered Region (DISEMBL)
ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMV**************************************************
Disordered Region (DISPRO)
*SDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAP************************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGPNFSLASQV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9W676	371	LIM domain-binding protei	yes	N/A	0.991	0.660	0.746	1e-109
O43679	373	LIM domain-binding protei	yes	N/A	0.995	0.659	0.739	1e-109
O55203	373	LIM domain-binding protei	yes	N/A	0.995	0.659	0.735	1e-109
P70060	375	LIM domain-binding protei	N/A	N/A	0.995	0.656	0.738	1e-107
O42252	411	LIM domain-binding protei	no	N/A	0.995	0.598	0.738	1e-107
Q6NVL6	373	LIM domain-binding protei	yes	N/A	0.991	0.656	0.741	1e-107
Q1EQW7	398	LIM domain-binding protei	N/A	N/A	0.995	0.618	0.723	1e-105
P70662	411	LIM domain-binding protei	no	N/A	0.995	0.598	0.722	1e-104
Q86U70	411	LIM domain-binding protei	no	N/A	0.995	0.598	0.722	1e-104
O73715	374	LIM domain-binding protei	no	N/A	0.870	0.574	0.788	1e-103

>sp|Q9W676|LDB2_CHICK LIM domain-binding protein 2 OS=Gallus gallus GN=LDB2 PE=2 SV=1

 Score =  394 bits (1013), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 188/252 (74%), Positives = 215/252 (85%), Gaps = 7/252 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45  DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           +RELVPR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct: 165 YRELVPRSILPMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
           LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKRK     + +  A N+A    SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283

Query: 235 RSPGPNFSLASQ 246
           +S   N SL+SQ
Sbjct: 284 KSAAANLSLSSQ 295

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.
Gallus gallus (taxid: 9031)

>sp|O43679|LDB2_HUMAN LIM domain-binding protein 2 OS=Homo sapiens GN=LDB2 PE=1 SV=1

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 187/253 (73%), Positives = 216/253 (85%), Gaps = 7/253 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45  DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
           LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKRK     + +  A N+A    SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283

Query: 235 RSPGPNFSLASQV 247
           ++   N SL+SQV
Sbjct: 284 KTTAANLSLSSQV 296

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Homo sapiens (taxid: 9606)

>sp|O55203|LDB2_MOUSE LIM domain-binding protein 2 OS=Mus musculus GN=Ldb2 PE=1 SV=2

 Score =  394 bits (1012), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 186/253 (73%), Positives = 216/253 (85%), Gaps = 7/253 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45  DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct: 165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
           LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKRK     + +  A N+   A SKK
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNTTNSAGSKK 283

Query: 235 RSPGPNFSLASQV 247
           ++P  + SLA+QV
Sbjct: 284 KTPAASLSLATQV 296

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Mus musculus (taxid: 10090)

>sp|P70060|LDB1_XENLA LIM domain-binding protein 1 OS=Xenopus laevis GN=ldb1 PE=1 SV=2

 Score =  388 bits (996), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/252 (73%), Positives = 210/252 (83%), Gaps = 6/252 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48  ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHN  ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
           LSPRDCLKT LFQKWQRMVAPP +   Q P+ KRRKRK   GS       +   + SKK+
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 286

Query: 236 SPGPNFSLASQV 247
           SP   F+L+SQV
Sbjct: 287 SPASTFALSSQV 298

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus laevis (taxid: 8355)

>sp|O42252|LDB1_CHICK LIM domain-binding protein 1 OS=Gallus gallus GN=LDB1 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/252 (73%), Positives = 211/252 (83%), Gaps = 6/252 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84  ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHN  ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
           LSPRDCLKT LFQKWQRMVAPP +   Q+P+ KRRKRK   GS       +   + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322

Query: 236 SPGPNFSLASQV 247
           SP   F+L+SQV
Sbjct: 323 SPASTFALSSQV 334

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Gallus gallus (taxid: 9031)

>sp|Q6NVL6|LDB1_XENTR LIM domain-binding protein 1 OS=Xenopus tropicalis GN=ldb1 PE=2 SV=1

 Score =  387 bits (995), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 186/251 (74%), Positives = 209/251 (83%), Gaps = 6/251 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 48  ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHN  ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
           LSPRDCLKT LFQKWQRMVAPP +   Q P NKRRKRK   GS       +   + SKK+
Sbjct: 228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKRKMSGGSTMSSGGGNTNNSNSKKK 286

Query: 236 SPGPNFSLASQ 246
           SP   F+L+SQ
Sbjct: 287 SPASTFALSSQ 297

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. Acts as a coactivator together with otx2 to stimulate lhx1/lim1-mediated activation of the gsc promoter in the Spemann organizer. Acts synergistically with lhx1/lim1 and ssbp in axis formation.

Xenopus tropicalis (taxid: 8364)

>sp|Q1EQW7|LDB2_XENLA LIM domain-binding protein 2 OS=Xenopus laevis GN=ldb2 PE=2 SV=1

 Score =  380 bits (976), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 183/253 (72%), Positives = 216/253 (85%), Gaps = 7/253 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct: 45  DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct: 105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           +REL+PR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct: 165 YRELLPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK----GSQSGGAANSAPPAPSKK 234
           LSPRDCLKT LFQKWQRMVAPP +  +++   KRRKRK     + +  A N+A  A ++K
Sbjct: 225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQTTTKRRKRKNSTNNASNSNAGNNATSAYNRK 283

Query: 235 RSPGPNFSLASQV 247
           + P  + +L++QV
Sbjct: 284 KVPAASLNLSNQV 296

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Xenopus laevis (taxid: 8355)

>sp|P70662|LDB1_MOUSE LIM domain-binding protein 1 OS=Mus musculus GN=Ldb1 PE=1 SV=2

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/252 (72%), Positives = 210/252 (83%), Gaps = 6/252 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84  ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKE+FH+  ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
           LSPRDCLKT LFQKWQRMVAPP +   Q+P+ KRRKRK   GS       +   + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPARQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322

Query: 236 SPGPNFSLASQV 247
           SP   F+L+SQV
Sbjct: 323 SPASTFALSSQV 334

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Mus musculus (taxid: 10090)

>sp|Q86U70|LDB1_HUMAN LIM domain-binding protein 1 OS=Homo sapiens GN=LDB1 PE=1 SV=2

 Score =  379 bits (972), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 182/252 (72%), Positives = 210/252 (83%), Gaps = 6/252 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct: 84  ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 143

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKE+FH+  ++LDCDQ +MVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 144 KHPKEAFHSNFVSLDCDQGSMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 203

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 204 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 263

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK---GSQSGGAANSAPPAPSKKR 235
           LSPRDCLKT LFQKWQRMVAPP +   Q+P+ KRRKRK   GS       +   + SKK+
Sbjct: 264 LSPRDCLKTCLFQKWQRMVAPPAEPTRQQPS-KRRKRKMSGGSTMSSGGGNTNNSNSKKK 322

Query: 236 SPGPNFSLASQV 247
           SP   F+L+SQV
Sbjct: 323 SPASTFALSSQV 334

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors. May regulate the transcriptional activity of LIM-containing proteins by determining specific partner interactions. May play a role in the development of motor neurons. Acts synergistically with LHX1/LIM1 in axis formation and activation of gene expression. Acts with LMO2 in the regulation of red blood cell development, maintaining erythroid precursors in an immature state.

Homo sapiens (taxid: 9606)

>sp|O73715|LDB1A_DANRE LIM domain-binding protein 1-A OS=Danio rerio GN=ldb1a PE=2 SV=1

 Score =  374 bits (959), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 172/218 (78%), Positives = 193/218 (88%), Gaps = 3/218 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           + DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TEL+Y L
Sbjct: 49  DCDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELFYVL 108

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHN  ++LDCDQCTMVT +GKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct: 109 KHPKESFHNNFVSLDCDQCTMVTQNGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 168

Query: 121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
           HRE+VPR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct: 169 HREVVPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 228

Query: 179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRK 216
           LSPRDCLKT LFQKWQRMVAPP +   Q P NKRRKRK
Sbjct: 229 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKRK 265

Binds to the LIM domain of a wide variety of LIM domain-containing transcription factors.

Danio rerio (taxid: 7955)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
91077994	575	PREDICTED: similar to lim domain binding	0.995	0.427	0.903	1e-135
340717783	617	PREDICTED: LIM domain-binding protein 2-	0.991	0.397	0.906	1e-132
270001422	708	hypothetical protein TcasGA2_TC000244 [T	0.983	0.343	0.891	1e-132
328776943	822	PREDICTED: hypothetical protein LOC41123	0.979	0.294	0.906	1e-131
345489287	669	PREDICTED: LIM domain-binding protein 2-	0.991	0.366	0.895	1e-131
345489285	662	PREDICTED: LIM domain-binding protein 2-	0.991	0.370	0.895	1e-131
380028812	601	PREDICTED: LOW QUALITY PROTEIN: LIM doma	0.979	0.402	0.906	1e-130
383856253	697	PREDICTED: uncharacterized protein LOC10	0.979	0.347	0.898	1e-130
157128172	576	lim domain binding protein [Aedes aegypt	0.995	0.427	0.876	1e-128
157134433	576	lim domain binding protein [Aedes aegypt	0.995	0.427	0.876	1e-128

>gi|91077994|ref|XP_969024.1| PREDICTED: similar to lim domain binding protein [Tribolium castaneum]

 Score =  486 bits (1252), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 225/249 (90%), Positives = 238/249 (95%), Gaps = 3/249 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDA+LTL FCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYN+
Sbjct: 238 ESDNLWWDAFATEFFEDDASLTLAFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNM 297

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNTSITLDCDQCTM+THHGKP+ TKVCTEGRLILEFTFDDLMRIKSWHFAVR 
Sbjct: 298 KHPKESFHNTSITLDCDQCTMITHHGKPLFTKVCTEGRLILEFTFDDLMRIKSWHFAVRT 357

Query: 121 HRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 177
           HREL+PR++VGM   QDPSML+QL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY
Sbjct: 358 HRELIPRSVVGMHSQQDPSMLDQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 417

Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSP 237
           ALSPRDCLKT LFQKWQRMVAPPGKRESQRPANKRRKRKGS SGGA N+A P P+KKRSP
Sbjct: 418 ALSPRDCLKTTLFQKWQRMVAPPGKRESQRPANKRRKRKGSNSGGAPNNATPTPNKKRSP 477

Query: 238 GPNFSLASQ 246
           GPNFSLASQ
Sbjct: 478 GPNFSLASQ 486

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340717783|ref|XP_003397355.1| PREDICTED: LIM domain-binding protein 2-like [Bombus terrestris]

 Score =  477 bits (1227), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 233/247 (94%), Gaps = 2/247 (0%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYNL
Sbjct: 258 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNL 317

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNTSITLDCD C MVTHHGKPM TKVCTEGRLILEFTFDDLMRIKSWH +VR 
Sbjct: 318 KHPKESFHNTSITLDCDNCVMVTHHGKPMFTKVCTEGRLILEFTFDDLMRIKSWHMSVRT 377

Query: 121 HRELVPRTIVGM-QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 179
           H+ELVPRT+VGM QDP+MLEQL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL
Sbjct: 378 HKELVPRTVVGMQQDPTMLEQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 437

Query: 180 SPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGP 239
           SPRDCLKT LFQKWQR  APPGKRESQRPA+KRRKRKGS   G  N+APPAPSKKRSPGP
Sbjct: 438 SPRDCLKTTLFQKWQRTFAPPGKRESQRPASKRRKRKGSTP-GPGNNAPPAPSKKRSPGP 496

Query: 240 NFSLASQ 246
           NFSLASQ
Sbjct: 497 NFSLASQ 503

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270001422|gb|EEZ97869.1| hypothetical protein TcasGA2_TC000244 [Tribolium castaneum]

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 222/249 (89%), Positives = 235/249 (94%), Gaps = 6/249 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDA+LTL FCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYN+
Sbjct: 374 ESDNLWWDAFATEFFEDDASLTLAFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNM 433

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNTSITLDCDQCTM+THHGKP+ TKVCTEGRLILEFTFDDLMRIKSWHFAVR 
Sbjct: 434 KHPKESFHNTSITLDCDQCTMITHHGKPLFTKVCTEGRLILEFTFDDLMRIKSWHFAVRT 493

Query: 121 HRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 177
           HREL+PR++VGM   QDPSML+QL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY
Sbjct: 494 HRELIPRSVVGMHSQQDPSMLDQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 553

Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSP 237
           ALSPRDCLKT LFQKWQRMVAPP   ESQRPANKRRKRKGS SGGA N+A P P+KKRSP
Sbjct: 554 ALSPRDCLKTTLFQKWQRMVAPP---ESQRPANKRRKRKGSNSGGAPNNATPTPNKKRSP 610

Query: 238 GPNFSLASQ 246
           GPNFSLASQ
Sbjct: 611 GPNFSLASQ 619

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328776943|ref|XP_394712.4| PREDICTED: hypothetical protein LOC411238 [Apis mellifera]

 Score =  473 bits (1216), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 233/247 (94%), Gaps = 5/247 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYNL
Sbjct: 319 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNL 378

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNTSITLDCD C MVTHHGKPM TKVCTEGRLILEFTFDDLMRIKSWH +VR 
Sbjct: 379 KHPKESFHNTSITLDCDNCVMVTHHGKPMFTKVCTEGRLILEFTFDDLMRIKSWHMSVRT 438

Query: 121 HRELVPRTIVGM-QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 179
           H+ELVPRT+VGM QDP+MLEQL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL
Sbjct: 439 HKELVPRTVVGMQQDPTMLEQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 498

Query: 180 SPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGP 239
           SPRDCLKT LFQKWQRMVAPP   ESQRPA+KRRKRKGS S G  N+APPAPSKKRSPGP
Sbjct: 499 SPRDCLKTTLFQKWQRMVAPP---ESQRPASKRRKRKGSTS-GPGNNAPPAPSKKRSPGP 554

Query: 240 NFSLASQ 246
           NFSLASQ
Sbjct: 555 NFSLASQ 561

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489287|ref|XP_001599552.2| PREDICTED: LIM domain-binding protein 2-like isoform 1 [Nasonia vitripennis]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/249 (89%), Positives = 229/249 (91%), Gaps = 4/249 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFA EFFEDDA+LTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYN+
Sbjct: 308 ESDNLWWDAFANEFFEDDASLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNM 367

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           K PKESFHNTSITLDCD C MVTHHGKP  TKVCTEGRLILEFTFDDLMRIKSWH AVRQ
Sbjct: 368 KQPKESFHNTSITLDCDHCVMVTHHGKPTFTKVCTEGRLILEFTFDDLMRIKSWHMAVRQ 427

Query: 121 HRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 177
           HRELVPR IV M   QDPS LEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY
Sbjct: 428 HRELVPRAIVSMTTTQDPSALEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 487

Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSP 237
           ALSPRDCLKT LFQKWQRMVAPPGKRESQRP NKRRKRKGS S G  N+APPAPSKKRSP
Sbjct: 488 ALSPRDCLKTTLFQKWQRMVAPPGKRESQRPTNKRRKRKGSTS-GPGNNAPPAPSKKRSP 546

Query: 238 GPNFSLASQ 246
           GPNFSL +Q
Sbjct: 547 GPNFSLTTQ 555

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345489285|ref|XP_003426091.1| PREDICTED: LIM domain-binding protein 2-like isoform 2 [Nasonia vitripennis]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 223/249 (89%), Positives = 229/249 (91%), Gaps = 4/249 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFA EFFEDDA+LTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYN+
Sbjct: 301 ESDNLWWDAFANEFFEDDASLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNM 360

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           K PKESFHNTSITLDCD C MVTHHGKP  TKVCTEGRLILEFTFDDLMRIKSWH AVRQ
Sbjct: 361 KQPKESFHNTSITLDCDHCVMVTHHGKPTFTKVCTEGRLILEFTFDDLMRIKSWHMAVRQ 420

Query: 121 HRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 177
           HRELVPR IV M   QDPS LEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY
Sbjct: 421 HRELVPRAIVSMTTTQDPSALEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAY 480

Query: 178 ALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSP 237
           ALSPRDCLKT LFQKWQRMVAPPGKRESQRP NKRRKRKGS S G  N+APPAPSKKRSP
Sbjct: 481 ALSPRDCLKTTLFQKWQRMVAPPGKRESQRPTNKRRKRKGSTS-GPGNNAPPAPSKKRSP 539

Query: 238 GPNFSLASQ 246
           GPNFSL +Q
Sbjct: 540 GPNFSLTTQ 548

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380028812|ref|XP_003698080.1| PREDICTED: LOW QUALITY PROTEIN: LIM domain-binding protein 2-like, partial [Apis florea]

 Score =  469 bits (1206), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 224/247 (90%), Positives = 233/247 (94%), Gaps = 5/247 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYNL
Sbjct: 101 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNL 160

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNTSITLDCD C MVTHHGKPM TKVCTEGRLILEFTFDDLMRIKSWH +VR 
Sbjct: 161 KHPKESFHNTSITLDCDNCVMVTHHGKPMFTKVCTEGRLILEFTFDDLMRIKSWHMSVRT 220

Query: 121 HRELVPRTIVGM-QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 179
           H+ELVPRT+VGM QDP+MLEQL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL
Sbjct: 221 HKELVPRTVVGMQQDPTMLEQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 280

Query: 180 SPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGP 239
           SPRDCLKT LFQKWQRMVAPP   ESQRPA+KRRKRKGS S G  N+APPAPSKKRSPGP
Sbjct: 281 SPRDCLKTTLFQKWQRMVAPP---ESQRPASKRRKRKGSTS-GPGNNAPPAPSKKRSPGP 336

Query: 240 NFSLASQ 246
           NFSLASQ
Sbjct: 337 NFSLASQ 343

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383856253|ref|XP_003703624.1| PREDICTED: uncharacterized protein LOC100880826 [Megachile rotundata]

 Score =  468 bits (1205), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 222/247 (89%), Positives = 233/247 (94%), Gaps = 5/247 (2%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELYYNL
Sbjct: 195 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYYNL 254

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           KHPKESFHNT+ITLDCD C MVTHHGKPM TKVCTEGRLILEFTFDDLMRIKSWH +VR 
Sbjct: 255 KHPKESFHNTTITLDCDHCVMVTHHGKPMFTKVCTEGRLILEFTFDDLMRIKSWHMSVRT 314

Query: 121 HRELVPRTIVGM-QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 179
           H+ELVPR++VGM QDP+MLEQL+KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL
Sbjct: 315 HKELVPRSVVGMQQDPTMLEQLSKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYAL 374

Query: 180 SPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSGGAANSAPPAPSKKRSPGP 239
           SPRDCLKT LFQKWQRMVAPP   ESQRPA+KRRKRKGS S G  N+APPAPSKKRSPGP
Sbjct: 375 SPRDCLKTTLFQKWQRMVAPP---ESQRPASKRRKRKGSTS-GPGNNAPPAPSKKRSPGP 430

Query: 240 NFSLASQ 246
           NFSLASQ
Sbjct: 431 NFSLASQ 437

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157128172|ref|XP_001661340.1| lim domain binding protein [Aedes aegypti] gi|108872666|gb|EAT36891.1| AAEL011058-PA, partial [Aedes aegypti]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/251 (87%), Positives = 230/251 (91%), Gaps = 5/251 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDN WWD+FA EFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELY+NL
Sbjct: 231 ESDNCWWDSFANEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYFNL 290

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           +H KESFHNTSITLDCDQCTM T HGKPM TKV TEGRLILEFTFDDLMRIKSWHFAVR 
Sbjct: 291 RHSKESFHNTSITLDCDQCTMETLHGKPMYTKVITEGRLILEFTFDDLMRIKSWHFAVRA 350

Query: 121 HRELVPRTIVGMQ----DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA 176
           HREL+PR++V M     DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA
Sbjct: 351 HRELIPRSVVAMHTQQPDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA 410

Query: 177 YALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSG-GAANSAPPAPSKKR 235
           YALSPRDCLKT LFQKWQRMVAPPGK  +QRPANKRRKRKGS SG GA N+ PPAPSKKR
Sbjct: 411 YALSPRDCLKTTLFQKWQRMVAPPGKLYAQRPANKRRKRKGSSSGAGAGNAGPPAPSKKR 470

Query: 236 SPGPNFSLASQ 246
           SPGPNFSLASQ
Sbjct: 471 SPGPNFSLASQ 481

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157134433|ref|XP_001663300.1| lim domain binding protein [Aedes aegypti] gi|108870464|gb|EAT34689.1| AAEL013094-PA, partial [Aedes aegypti]

 Score =  463 bits (1192), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 220/251 (87%), Positives = 230/251 (91%), Gaps = 5/251 (1%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
           ESDN WWD+FA EFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIF+GG+TELY+NL
Sbjct: 231 ESDNCWWDSFANEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFEGGVTELYFNL 290

Query: 61  KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
           +H KESFHNTSITLDCDQCTM T HGKPM TKV TEGRLILEFTFDDLMRIKSWHFAVR 
Sbjct: 291 RHSKESFHNTSITLDCDQCTMETLHGKPMYTKVITEGRLILEFTFDDLMRIKSWHFAVRA 350

Query: 121 HRELVPRTIVGMQ----DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA 176
           HREL+PR++V M     DPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA
Sbjct: 351 HRELIPRSVVAMHTQQPDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKA 410

Query: 177 YALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSG-GAANSAPPAPSKKR 235
           YALSPRDCLKT LFQKWQRMVAPPGK  +QRPANKRRKRKGS SG GA N+ PPAPSKKR
Sbjct: 411 YALSPRDCLKTTLFQKWQRMVAPPGKLYAQRPANKRRKRKGSSSGAGAGNAGPPAPSKKR 470

Query: 236 SPGPNFSLASQ 246
           SPGPNFSLASQ
Sbjct: 471 SPGPNFSLASQ 481

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
UNIPROTKB|F1NRA7	330	LDB2 "LIM domain-binding prote	0.991	0.742	0.715	2.5e-97
UNIPROTKB|E9PFI4	313	LDB2 "LIM domain-binding prote	0.995	0.785	0.711	2.5e-97
UNIPROTKB|O43679	373	LDB2 "LIM domain-binding prote	0.995	0.659	0.711	2.5e-97
UNIPROTKB|E1C373	337	LDB2 "LIM domain-binding prote	0.991	0.727	0.714	3.2e-97
UNIPROTKB|F1NGI1	371	LDB2 "LIM domain-binding prote	0.991	0.660	0.714	3.2e-97
UNIPROTKB|Q9W676	371	LDB2 "LIM domain-binding prote	0.991	0.660	0.714	5.2e-97
UNIPROTKB|G5E9Y7	371	LDB2 "LIM domain-binding prote	0.991	0.660	0.710	6.6e-97
UNIPROTKB|F1PRG9	372	LDB2 "Uncharacterized protein"	0.991	0.658	0.707	2.2e-96
UNIPROTKB|Q6NVL6	373	ldb1 "LIM domain-binding prote	0.866	0.573	0.801	2.9e-96
MGI|MGI:894670	373	Ldb2 "LIM domain binding 2" [M	0.866	0.573	0.797	2.9e-96

UNIPROTKB|F1NRA7 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 181/253 (71%), Positives = 203/253 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP    +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 282

Query:   237 --XXXNFSLASQV 247
                  N SL+SQV
Sbjct:   283 KSAAANLSLSSQV 295

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|E9PFI4 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 180/253 (71%), Positives = 204/253 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283

Query:   237 --XXXNFSLASQV 247
                  N SL+SQV
Sbjct:   284 KTTAANLSLSSQV 296

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|O43679 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
 Identities = 180/253 (71%), Positives = 204/253 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283

Query:   237 --XXXNFSLASQV 247
                  N SL+SQV
Sbjct:   284 KTTAANLSLSSQV 296

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0030274 "LIM domain binding" evidence=ISS

GO:0005634 "nucleus" evidence=IDA

UNIPROTKB|E1C373 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 180/252 (71%), Positives = 203/252 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    11 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 70

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:    71 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 130

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   131 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 190

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   191 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 249

Query:   237 --XXXNFSLASQ 246
                  N SL+SQ
Sbjct:   250 KSAAANLSLSSQ 261

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|F1NGI1 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 966 (345.1 bits), Expect = 3.2e-97, P = 3.2e-97
 Identities = 180/252 (71%), Positives = 203/252 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283

Query:   237 --XXXNFSLASQ 246
                  N SL+SQ
Sbjct:   284 KSAAANLSLSSQ 295

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

GO:0001942 "hair follicle development" evidence=IEA

GO:0005667 "transcription factor complex" evidence=IEA

GO:0010669 "epithelial structure maintenance" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IEA

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q9W676 LDB2 "LIM domain-binding protein 2" [Gallus gallus (taxid:9031)]

 Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
 Identities = 180/252 (71%), Positives = 203/252 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +LEQL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILPMHAQDPQVLEQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTNSKK 283

Query:   237 --XXXNFSLASQ 246
                  N SL+SQ
Sbjct:   284 KSAAANLSLSSQ 295

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0030274 "LIM domain binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|G5E9Y7 LDB2 "LIM domain-binding protein 2" [Homo sapiens (taxid:9606)]

 Score = 963 (344.1 bits), Expect = 6.6e-97, P = 6.6e-97
 Identities = 179/252 (71%), Positives = 203/252 (80%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQCTMVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCTMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXX-- 236
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 283

Query:   237 --XXXNFSLASQ 246
                  N SL+SQ
Sbjct:   284 KTTAANLSLSSQ 295

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0030274 "LIM domain binding" evidence=IEA

UNIPROTKB|F1PRG9 LDB2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 958 (342.3 bits), Expect = 2.2e-96, P = 2.2e-96
 Identities = 179/253 (70%), Positives = 202/253 (79%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRXXXXXXXXXXXXXXXXXXXXXX- 237
             LSPRDCLKT LFQKWQRMVAPP    +++P  KRRKR                       
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPP--EPTRQPTTKRRKRKNSTSSTSNSSAGNNANSTGSKK 282

Query:   238 ---XXNFSLASQV 247
                  N SL+SQV
Sbjct:   283 KTPAANLSLSSQV 295

GO:0030274 "LIM domain binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003712 "transcription cofactor activity" evidence=IEA

UNIPROTKB|Q6NVL6 ldb1 "LIM domain-binding protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 174/217 (80%), Positives = 192/217 (88%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             E DNLWWDAF TEFFEDDA LT+TFCLEDGPKRYTIGRTLIPRYFRSIF+GG TELYY L
Sbjct:    48 ECDNLWWDAFTTEFFEDDAMLTITFCLEDGPKRYTIGRTLIPRYFRSIFEGGATELYYVL 107

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KHPKESFHN  ++LDCDQCTMVT HGKPM T+VC EGRL LEF FDD+MRIK+WHF++RQ
Sbjct:   108 KHPKESFHNNFVSLDCDQCTMVTQHGKPMFTQVCVEGRLYLEFMFDDMMRIKTWHFSIRQ 167

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             HREL+PR+I+ M  QDP ML+QL+KNITR G++NSTLNYLRLCVILEPMQELMSRHK Y+
Sbjct:   168 HRELIPRSILAMHAQDPQMLDQLSKNITRCGLSNSTLNYLRLCVILEPMQELMSRHKTYS 227

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
             LSPRDCLKT LFQKWQRMVAPP +   Q P NKRRKR
Sbjct:   228 LSPRDCLKTCLFQKWQRMVAPPAEPARQAP-NKRRKR 263

GO:0005634 "nucleus" evidence=ISS

GO:0030274 "LIM domain binding" evidence=ISS

GO:0042803 "protein homodimerization activity" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

MGI|MGI:894670 Ldb2 "LIM domain binding 2" [Mus musculus (taxid:10090)]

 Score = 957 (341.9 bits), Expect = 2.9e-96, P = 2.9e-96
 Identities = 173/217 (79%), Positives = 196/217 (90%)

Query:     1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNL 60
             +SDNLWWDAFATEFFEDDATLTL+FCLEDGPKRYTIGRTLIPRYF ++F+GG+T+LYY L
Sbjct:    45 DSDNLWWDAFATEFFEDDATLTLSFCLEDGPKRYTIGRTLIPRYFSTVFEGGVTDLYYIL 104

Query:    61 KHPKESFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQ 120
             KH KES+HN+SIT+DCDQC MVT HGKPM TKVCTEGRLILEFTFDDLMRIK+WHF +RQ
Sbjct:   105 KHSKESYHNSSITVDCDQCAMVTQHGKPMFTKVCTEGRLILEFTFDDLMRIKTWHFTIRQ 164

Query:   121 HRELVPRTIVGM--QDPSMLEQLTKNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA 178
             +RELVPR+I+ M  QDP +L+QL+KNITR G+TN TLNYLRLCVILEPMQELMSRHK Y 
Sbjct:   165 YRELVPRSILAMHAQDPQVLDQLSKNITRMGLTNFTLNYLRLCVILEPMQELMSRHKTYN 224

Query:   179 LSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKR 215
             LSPRDCLKT LFQKWQRMVAPP +  +++P  KRRKR
Sbjct:   225 LSPRDCLKTCLFQKWQRMVAPPAE-PTRQPTTKRRKR 260

GO:0000989 "transcription factor binding transcription factor activity" evidence=IPI

GO:0001942 "hair follicle development" evidence=IGI

GO:0003712 "transcription cofactor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=ISO

GO:0005667 "transcription factor complex" evidence=IDA

GO:0010669 "epithelial structure maintenance" evidence=IGI

GO:0019899 "enzyme binding" evidence=IPI

GO:0030274 "LIM domain binding" evidence=IEA

GO:0035019 "somatic stem cell maintenance" evidence=IGI

GO:0044089 "positive regulation of cellular component biogenesis" evidence=IGI

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9W676	LDB2_CHICK	No assigned EC number	0.7460	0.9919	0.6603	yes	N/A
O55203	LDB2_MOUSE	No assigned EC number	0.7351	0.9959	0.6595	yes	N/A
Q6NVL6	LDB1_XENTR	No assigned EC number	0.7410	0.9919	0.6568	yes	N/A
Q1EQW7	LDB2_XENLA	No assigned EC number	0.7233	0.9959	0.6180	N/A	N/A
P70060	LDB1_XENLA	No assigned EC number	0.7380	0.9959	0.656	N/A	N/A
O43679	LDB2_HUMAN	No assigned EC number	0.7391	0.9959	0.6595	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	247
pfam01803	230	pfam01803, LIM_bind, LIM-domain binding protein	2e-73

>gnl|CDD|216712 pfam01803, LIM_bind, LIM-domain binding protein

 Score =  222 bits (569), Expect = 2e-73
 Identities = 70/217 (32%), Positives = 104/217 (47%), Gaps = 34/217 (15%)

Query: 1   ESDNLWWDAFATEFFEDDATLTLTFCLEDGP--KRYTIGRTLIPRYFRSIFDGGITELYY 58
           + D  +W  F  EFF  DA L  +   EDGP  K++ I    +PRYFR+IF+ G+ EL  
Sbjct: 18  DDDISYWQRFVHEFFSPDAVLRYSLSSEDGPEGKQFEITTPALPRYFRTIFESGVKELQL 77

Query: 59  NLKHPKE-SFHNTSITLDCDQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFA 117
            L   +E    N SI ++C + + +  +      +V TEG L     FD  ++I+ W F 
Sbjct: 78  VLDGAREQVLPNGSIFVECPKASFIYWYDDGS--QVVTEGTLRAH--FDPDLKIEWWDFC 133

Query: 118 VRQHRELVPRTIVGM-------------QDPSMLEQL-------------TKNITRQGIT 151
            R H E +PR+++                + S   QL             + N+TR G+ 
Sbjct: 134 TRSHEEYIPRSVLEPLASPLHTKSKQQSPELSKNSQLRQQKGPQPITSLPSSNVTRFGLP 193

Query: 152 NSTLNYLRLCVILEPMQELMSRHKAY-ALSPRDCLKT 187
            + + +L +  IL PMQ+LMS  KA   LSPR+ LK 
Sbjct: 194 KAVMRFLEIAEILSPMQDLMSFSKANPILSPREALKQ 230

The LIM-domain binding protein, binds to the LIM domain pfam00412 of LIM homeodomain proteins which are transcriptional regulators of development. Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development. The Drosophila protein Chip is required for segmentation and activity of a remote wing margin enhancer. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions. Length = 230

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
KOG2181|consensus	415		100.0
PF01803	240	LIM_bind: LIM-domain binding protein; InterPro: IP	100.0

>KOG2181|consensus

Probab=100.00  E-value=6e-86  Score=603.50  Aligned_cols=247  Identities=70%  Similarity=1.174  Sum_probs=238.7

Q ss_pred             CcchHHHHHHHHhhcCCCCceEEEeecCCCCeeeeecccchhhHHHHhhcccceeeeeeccCCcccccCcceEEEcCCcE
Q psy2753           1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKESFHNTSITLDCDQCT   80 (247)
Q Consensus         1 ~~di~yW~~FV~eFFsp~a~lr~~~~~~~~~K~FEI~~~~LPRyF~t~F~sGV~~~~~~L~~p~e~l~ng~i~~e~~~a~   80 (247)
                      ++|..|||+|.+|||+|||+|+++||.|+|+|+|.|++++|||||+++||+||+++||+|++|+|+|+||.+.+||++|+
T Consensus        67 ~sdN~WWDaFstEFFeDDa~Lt~~fclEdgpkRYtIgRtlIPrfFrsIfegG~~eLyyvLkh~ket~hn~s~~~dcdq~~  146 (415)
T KOG2181|consen   67 VSDNQWWDAFSTEFFEDDAKLTFVFCLEDGPKRYTIGRTLIPRFFRSIFEGGMRELYYVLKHPKETLHNGSQAYDCDQVL  146 (415)
T ss_pred             cchhhhHHhhhhhhhcCCceEEEEEEecCCcceeeeccchhHHHHHHHHhcchhhhhhhhcCchhhhcCCceeeecccee
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEEecCCcceEEeeeceEEEEEecCccceeeEEEEeecceeeeeecccccC---CCchhhHhhccCCCCCCCChhhhhh
Q psy2753          81 MVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM---QDPSMLEQLTKNITRQGITNSTLNY  157 (247)
Q Consensus        81 ~v~~y~~~~~~~V~~eG~Lr~~F~~d~~lKIe~weF~~~~heE~IpR~~i~~---QsP~~~kql~k~V~~~Gv~~~~~r~  157 (247)
                      +|+.|++|++++||+||+|.++|.+||.|||++|+|++++|+|+|||++|++   .+|++++|+.|||+++|++++|+||
T Consensus       147 ~iTqhgkp~ft~VctegrL~lEF~fDd~MRIK~Wh~~ik~~rElvprsil~~~a~~dp~~ldq~~kNitR~G~~nsTlNy  226 (415)
T KOG2181|consen  147 QITQHGKPSFTEVCTEGRLYLEFAFDDVMRIKAWHLEIKRSRELVPRSILQNTADYDPEALDQEQKNITRMGFFNSTLNY  226 (415)
T ss_pred             EEeecCCccceeeeccceEEEEeehhhhhhhhheeeeeeccccccchhhhhccCCCChhhhChhhccccccccchhhHHH
Confidence            9999999999999999999999999999999999999999999999999975   4999999999999999999999999


Q ss_pred             hhHHHHhhchHHHHHhhhcCCCCHHHHHHHHHhhhhhhccCCCCCCCCCCCchhhhcccCCCCC----CCCCCCCCCCCC
Q psy2753         158 LRLCVILEPMQELMSRHKAYALSPRDCLKTALFQKWQRMVAPPGKRESQRPANKRRKRKGSQSG----GAANSAPPAPSK  233 (247)
Q Consensus       158 LeI~Eil~~Mq~Lm~f~k~~~l~P~eaLk~~lfq~~q~~~~p~~~~~~~~p~~k~~~~~~~~~~----~~~~~~~~~~~~  233 (247)
                      |++|+||++||+||+.||.+.|+|+||||+||||||||||+||+||+++||++||||||+++++    +++|+++++++|
T Consensus       227 lrlcvILePMQelMSrhKayalsPRdclKttLFQkwQrMvaPp~ep~~qkp~~KRrkrk~a~~~~~~~~a~nna~~~n~k  306 (415)
T KOG2181|consen  227 LRLCVILEPMQELMSRHKAYALSPRDCLKTTLFQKWQRMVAPPPEPEKQKPARKRRKRKAAAAAAAAAAAANNASPANNK  306 (415)
T ss_pred             HHHHHHHhHHHHHHHhccccCCCHHHHHHHHHHHHhhhhhcCCCCCCCCCCchhhhhcccccccccccccCCCCCccccc
Confidence            9999999999999999999999999999999999999999999999999999999999976643    456677888999


Q ss_pred             CCCCCCCCCcccCC
Q psy2753         234 KRSPGPNFSLASQV  247 (247)
Q Consensus       234 ~~~~~~~~~~~~~~  247 (247)
                      |++|++.+||+|||
T Consensus       307 ~~p~~p~~slssQ~  320 (415)
T KOG2181|consen  307 QFPPNPMTSLSSQM  320 (415)
T ss_pred             cCCCCcchhhhhcC
Confidence            99999999999996

>PF01803 LIM_bind: LIM-domain binding protein; InterPro: IPR002691 The LIM-domain binding protein, binds to the LIM domain IPR001781 from INTERPRO of LIM homeodomain proteins which are transcriptional regulators of development

Probab=100.00  E-value=1.4e-56  Score=397.99  Aligned_cols=182  Identities=33%  Similarity=0.645  Sum_probs=167.1

Q ss_pred             CcchHHHHHHHHhhcCCCCceEEEeecCCCC---eeeeecccchhhHHHHhhcccceeeeeeccCCccc-ccCcceEEEc
Q psy2753           1 ESDNLWWDAFATEFFEDDATLTLTFCLEDGP---KRYTIGRTLIPRYFRSIFDGGITELYYNLKHPKES-FHNTSITLDC   76 (247)
Q Consensus         1 ~~di~yW~~FV~eFFsp~a~lr~~~~~~~~~---K~FEI~~~~LPRyF~t~F~sGV~~~~~~L~~p~e~-l~ng~i~~e~   76 (247)
                      ++|++||++||+|||+|+|+|||+++.+++.   |+|||++++|||||+++|++||++|+++|++++|. ++||.+++||
T Consensus        18 ~~~~~yW~~fv~~fF~~~a~lr~~~~~~~~~~~~k~FEi~~~~lPR~f~~~~~sGv~~~~~~l~~~~e~~l~ng~i~ie~   97 (240)
T PF01803_consen   18 LNDIEYWQKFVHEFFSPDAVLRISLWNEDGNGSPKQFEITRPLLPRYFRTLFESGVKRMQLVLDGPREQVLPNGSIFIEC   97 (240)
T ss_pred             CCcHHHHHHHHHHHcCCCeeEEEEEEcCCCCCCCeeEEEchHHHHHHHHHHhcCCceEEEEEecCCceEEcCCCeEEEEE
Confidence            4899999999999999999999999877765   99999999999999999999999999999999999 8999999999


Q ss_pred             CCcEEEEEecCCcceEEeeeceEEEEEecCccceeeEEEEeecceeeeeecccccC--------------------CCch
Q psy2753          77 DQCTMVTHHGKPMLTKVCTEGRLILEFTFDDLMRIKSWHFAVRQHRELVPRTIVGM--------------------QDPS  136 (247)
Q Consensus        77 ~~a~~v~~y~~~~~~~V~~eG~Lr~~F~~d~~lKIe~weF~~~~heE~IpR~~i~~--------------------QsP~  136 (247)
                      ++|+++++|.+|  .+|+.+|+||++|+.  ++|||+|||++++|+|||||+++..                    ++|+
T Consensus        98 ~~~~~~~~y~~g--s~v~~~G~lr~~f~~--~lKIe~~df~~~~~~e~I~r~~l~~~~~~~~~~~~~~~~~~~~~k~~~~  173 (240)
T PF01803_consen   98 PRATFIYWYEDG--SQVVHEGQLRAQFDP--DLKIEWWDFCTRSHEEYIPRSALEQQASNLHPSVQIFQKLSPDQKQSPD  173 (240)
T ss_pred             CCEEEEEEECCc--eEEEEEeEEEEEECc--cccEEEEEEEeecccccCcHHHHHHhhccchhhhHHhhhcccccccccc
Confidence            999999999985  599999999999987  9999999999999999999998832                    3455


Q ss_pred             hhHhh--c-------------cCCCCCCCChhhhhhhhHHHHhhchHHHHHhhhcCC-CCHHHHHH
Q psy2753         137 MLEQL--T-------------KNITRQGITNSTLNYLRLCVILEPMQELMSRHKAYA-LSPRDCLK  186 (247)
Q Consensus       137 ~~kql--~-------------k~V~~~Gv~~~~~r~LeI~Eil~~Mq~Lm~f~k~~~-l~P~eaLk  186 (247)
                      +.++.  +             ++|+++|+|+++||||||||||++|++||.|++.++ +||+|||+
T Consensus       174 ~~~~~~~~~~~~~~~~~~Lp~~~v~~~Gi~~~~mr~Lqi~evms~M~~Lm~fs~~~~~~sP~eaL~  239 (240)
T PF01803_consen  174 MSKNSKARQQKSPQLPPSLPSSNVNEFGIPERVMRCLQIAEVMSQMKDLMSFSKQNNILSPLEALE  239 (240)
T ss_pred             hhhhhhhhhhcccccCCCcccCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHhc
Confidence            54442  2             579999999999999999999999999999977765 99999997

Nuclear LIM interactor (NLI) / LIM domain-binding protein 1 (LDB1) P70662 from SWISSPROT is located in the nuclei of neuronal cells during development, it is co-expressed with Isl1 in early motor neuron differentiation and has a suggested role in the Isl1 dependent development of motor neurons []. It is suggested that these proteins act synergistically to enhance transcriptional efficiency by acting as co-factors for LIM homeodomain and Otx class transcription factors both of which have essential roles in development []. The Drosophila melanogaster protein Chip O18353 from SWISSPROT is required for segmentation and activity of a remote wing margin enhancer []. Chip is a ubiquitous chromosomal factor required for normal expression of diverse genes at many stages of development []. It is suggested that Chip cooperates with different LIM domain proteins and other factors to structurally support remote enhancer-promoter interactions [].; GO: 0003712 transcription cofactor activity, 0005634 nucleus

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 9e-04
 Identities = 45/224 (20%), Positives = 83/224 (37%), Gaps = 50/224 (22%)

Query: 5   LWWDAFATEFFEDDATLTLTFCLEDGPKRYTIGRTLIP-RYF-------------RSIFD 50
           +W+D   ++       L     +E  PK  TI    IP  Y              RSI D
Sbjct: 395 IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS---IPSIYLELKVKLENEYALHRSIVD 451

Query: 51  GGITELYYNLKHPKESFHNTSITLDC-DQ--CTMVTHHGKPM-LTKVCTEGRLI-LEFTF 105
                 +YN+    ++F +  +     DQ   + + HH K +   +  T  R++ L+F F
Sbjct: 452 ------HYNI---PKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRF 502

Query: 106 DDLMRIKSWHFAVRQHRELVPRTIVGMQDPSMLEQLTKNITRQGITNSTLNYLRLCVILE 165
              +  K     +R H          + +   L+QL     +  I ++   Y RL   + 
Sbjct: 503 ---LEQK-----IR-HDSTAWNASGSILN--TLQQLKF--YKPYICDNDPKYERL---VN 546

Query: 166 PMQELMSRHKAYAL-SP-RDCLKTALFQKWQRMVAPPGKRESQR 207
            + + + + +   + S   D L+ AL  +    +     ++ QR
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE-DEAIFEEAHKQVQR 589

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00