Psyllid ID: psy2803

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
Protein Sequence
MVPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHcccccEEccccHHHHHHHHHHHHHHcccccccEEEEEEEHHHHccccccccccHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccHHHHHHHHHEEEEEEcccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHccccccHEEccccHHHHHHHHHHHHHHcccccccEEEEEEEEEHHcHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccccHHHHHHHHEEEEEcHHcccccccc
Coil and Loop (DISEMBL)
MVPQKEMLISLVVHHIGlgaifeqgTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLmslhsspnlINFMTrlgfepkftesfgvfcpepqskfdlsLILRQSIIMVdlklfsqsdcii
Flexible Loop (DISEMBL)
MVPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIImvdlklfsqsdcii
Low Complexity Region (SEG)
MVPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Disordered region (IsUnstruct)
******MLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQ*****
Disordered Region (DISOPRED)
***********VVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Disordered Region (DISEMBL)
MVPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Disordered Region (DISPRO)
*VPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVPQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKMLVTNLMSLHSSPNLINFMTRLGFEPKFTESFGVFCPEPQSKFDLSLILRQSIIMVDLKLFSQSDCII
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	141	2.2.26 [Sep-21-2011]
Q03445	991	Glutamate receptor 1 OS=D	yes	N/A	0.460	0.065	0.742	2e-21

>sp|Q03445|GLK1_DROME Glutamate receptor 1 OS=Drosophila melanogaster GN=Glu-RI PE=2 SV=2

 Score =  100 bits (249), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 4  QKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADA 63
          Q++  +SL    I LGAIFEQGTD+VQSAFK+AML HN N ++RRFELQAYVDVINTADA
Sbjct: 29 QQQQTVSLT-EKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADA 87

Query: 64 FKLSRL 69
          FKLSRL
Sbjct: 88 FKLSRL 93

Receptor for glutamate. L-glutamate acts as an excitatory neurotransmitter at many synapses in the central nervous system. The postsynaptic actions of Glu are mediated by a variety of receptors that are named according to their selective agonists.
Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
307208275	286	Glutamate receptor 1 [Harpegnathos salta	0.375	0.185	0.905	9e-21
189241889	929	PREDICTED: similar to AGAP006027-PA [Tri	0.382	0.058	0.907	1e-20
350402901	924	PREDICTED: glutamate receptor 1-like [Bo	0.382	0.058	0.870	2e-20
340716839	924	PREDICTED: glutamate receptor 1-like [Bo	0.382	0.058	0.870	2e-20
380018371	1105	PREDICTED: LOW QUALITY PROTEIN: glutamat	0.382	0.048	0.851	4e-20
195337963	539	GM14793 [Drosophila sechellia] gi|194128	0.468	0.122	0.727	9e-20
195374740	1067	GJ12753 [Drosophila virilis] gi|19415331	0.382	0.050	0.888	1e-19
195173933	444	GL18426 [Drosophila persimilis] gi|19411	0.382	0.121	0.870	1e-19
17136702	991	glutamate receptor I [Drosophila melanog	0.460	0.065	0.742	2e-19
195125037	1068	GI12629 [Drosophila mojavensis] gi|19391	0.382	0.050	0.870	2e-19

>gi|307208275|gb|EFN85707.1| Glutamate receptor 1 [Harpegnathos saltator]

 Score =  104 bits (260), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 48/53 (90%), Positives = 51/53 (96%)

Query: 17  GLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
           G GAIFEQGTDEVQSAFKFAML HNQNTTTR+FELQA+VDVINTADA+KLSRL
Sbjct: 214 GRGAIFEQGTDEVQSAFKFAMLNHNQNTTTRKFELQAFVDVINTADAYKLSRL 266

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189241889|ref|XP_968786.2| PREDICTED: similar to AGAP006027-PA [Tribolium castaneum] gi|270016489|gb|EFA12935.1| hypothetical protein TcasGA2_TC010481 [Tribolium castaneum]

 Score =  104 bits (260), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 49/54 (90%), Positives = 50/54 (92%)

Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
          I LGAIFEQGTDEVQ+AFKFAML HNQN T RRFELQAYVDVINTADAFKLSRL
Sbjct: 26 IPLGAIFEQGTDEVQTAFKFAMLNHNQNVTARRFELQAYVDVINTADAFKLSRL 79

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402901|ref|XP_003486640.1| PREDICTED: glutamate receptor 1-like [Bombus impatiens]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 51/54 (94%)

Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
          I +GAIFEQGTDEVQSAFKFAM  HNQNTTTR+FELQA+VDVINTADA+KLSRL
Sbjct: 20 ISIGAIFEQGTDEVQSAFKFAMFNHNQNTTTRKFELQAFVDVINTADAYKLSRL 73

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340716839|ref|XP_003396900.1| PREDICTED: glutamate receptor 1-like [Bombus terrestris]

 Score =  103 bits (258), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 51/54 (94%)

Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
          I +GAIFEQGTDEVQSAFKFAM  HNQNTTTR+FELQA+VDVINTADA+KLSRL
Sbjct: 20 ISIGAIFEQGTDEVQSAFKFAMFNHNQNTTTRKFELQAFVDVINTADAYKLSRL 73

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380018371|ref|XP_003693103.1| PREDICTED: LOW QUALITY PROTEIN: glutamate receptor 1-like [Apis florea]

 Score =  102 bits (255), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 46/54 (85%), Positives = 50/54 (92%)

Query: 16  IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
           I +GAIFEQGTDEVQSAFKFAM  HNQNTTTR+FE QA+VDVINTADA+KLSRL
Sbjct: 69  ISIGAIFEQGTDEVQSAFKFAMFNHNQNTTTRKFEFQAFVDVINTADAYKLSRL 122

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195337963|ref|XP_002035595.1| GM14793 [Drosophila sechellia] gi|194128688|gb|EDW50731.1| GM14793 [Drosophila sechellia]

 Score =  101 bits (252), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 48/66 (72%), Positives = 56/66 (84%)

Query: 4  QKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADA 63
          Q++ L + +   I LGAIFEQGTD+VQSAFK+AML HN N ++RRFELQAYVDVINTADA
Sbjct: 28 QQQQLAASLTEKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADA 87

Query: 64 FKLSRL 69
          FKLSRL
Sbjct: 88 FKLSRL 93

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195374740|ref|XP_002046161.1| GJ12753 [Drosophila virilis] gi|194153319|gb|EDW68503.1| GJ12753 [Drosophila virilis]

 Score =  101 bits (251), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/54 (88%), Positives = 50/54 (92%)

Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
          I LGAIFEQGTDEVQSAFK+AML HN N +TRRFELQAYVDVINTADAFKLSRL
Sbjct: 35 IPLGAIFEQGTDEVQSAFKYAMLNHNLNVSTRRFELQAYVDVINTADAFKLSRL 88

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195173933|ref|XP_002027738.1| GL18426 [Drosophila persimilis] gi|194114700|gb|EDW36743.1| GL18426 [Drosophila persimilis]

 Score =  100 bits (250), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 50/54 (92%)

Query: 16  IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
           I LGAIFEQGTDEVQSAFK+AML HN N ++RRFELQAYVDVINTADAFKLSRL
Sbjct: 49  IPLGAIFEQGTDEVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSRL 102

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|17136702|ref|NP_476855.1| glutamate receptor I [Drosophila melanogaster] gi|68067727|sp|Q03445.2|GLK1_DROME RecName: Full=Glutamate receptor 1; AltName: Full=Glutamate receptor I; Short=dGLUR-I; AltName: Full=Kainate-selective glutamate receptor; Flags: Precursor gi|23094076|gb|AAF50652.2| glutamate receptor I [Drosophila melanogaster] gi|211938491|gb|ACJ13142.1| FI02103p [Drosophila melanogaster]

 Score =  100 bits (249), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 56/66 (84%), Gaps = 1/66 (1%)

Query: 4  QKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADA 63
          Q++  +SL    I LGAIFEQGTD+VQSAFK+AML HN N ++RRFELQAYVDVINTADA
Sbjct: 29 QQQQTVSLT-EKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADA 87

Query: 64 FKLSRL 69
          FKLSRL
Sbjct: 88 FKLSRL 93

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195125037|ref|XP_002006989.1| GI12629 [Drosophila mojavensis] gi|193918598|gb|EDW17465.1| GI12629 [Drosophila mojavensis]

 Score =  100 bits (249), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 47/54 (87%), Positives = 50/54 (92%)

Query: 16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRL 69
          I LGAIFEQGTDEVQSAFK+AML HN N ++RRFELQAYVDVINTADAFKLSRL
Sbjct: 34 IPLGAIFEQGTDEVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSRL 87

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	141
FB|FBgn0004619	991	GluRIA "Glutamate receptor IA"	0.460	0.065	0.742	7e-19
FB|FBgn0264000	1095	GluRIB "Glutamate receptor IB"	0.758	0.097	0.535	1e-18
UNIPROTKB|E9PJZ5	82	GRIA4 "Glutamate receptor 4" [	0.368	0.634	0.333	0.00073

FB|FBgn0004619 GluRIA "Glutamate receptor IA" [Drosophila melanogaster (taxid:7227)]

 Score = 239 (89.2 bits), Expect = 7.0e-19, P = 7.0e-19
 Identities = 49/66 (74%), Positives = 56/66 (84%)

Query:     4 QKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADA 63
             Q++  +SL    I LGAIFEQGTD+VQSAFK+AML HN N ++RRFELQAYVDVINTADA
Sbjct:    29 QQQQTVSLT-EKIPLGAIFEQGTDDVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADA 87

Query:    64 FKLSRL 69
             FKLSRL
Sbjct:    88 FKLSRL 93

GO:0006812 "cation transport" evidence=IDA

GO:0004971 "alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity" evidence=IDA

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=IDA

GO:0008328 "ionotropic glutamate receptor complex" evidence=IDA

GO:0005886 "plasma membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=NAS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA;NAS

FB|FBgn0264000 GluRIB "Glutamate receptor IB" [Drosophila melanogaster (taxid:7227)]

 Score = 238 (88.8 bits), Expect = 1.0e-18, P = 1.0e-18
 Identities = 61/114 (53%), Positives = 73/114 (64%)

Query:    16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKML 75
             I LGAIFEQGTDEVQSAFK+AML HN N ++RRFELQAYVDVINTADAFKLSRL I    
Sbjct:    42 IPLGAIFEQGTDEVQSAFKYAMLNHNLNVSSRRFELQAYVDVINTADAFKLSRL-ICNQF 100

Query:    76 VTNLMSLHSSPNLINFMTRLGFEPKFTESFGV-FCPE----PQSKF-DLSLILR 123
                + S+  + +  +F T   +   F   F   + PE    P S F D +L +R
Sbjct:   101 SRGVYSMLGAVSPDSFDTLHSYSNTFQMPFVTPWFPEKVLTPSSGFLDFALSMR 154

GO:0008328 "ionotropic glutamate receptor complex" evidence=ISS

GO:0004970 "ionotropic glutamate receptor activity" evidence=IEA;ISS

GO:0004971 "alpha-amino-3-hydroxy-5-methyl-4-isoxazole propionate selective glutamate receptor activity" evidence=ISS

GO:0006812 "cation transport" evidence=ISS

GO:0005230 "extracellular ligand-gated ion channel activity" evidence=ISS

GO:0005234 "extracellular-glutamate-gated ion channel activity" evidence=IEA

UNIPROTKB|E9PJZ5 GRIA4 "Glutamate receptor 4" [Homo sapiens (taxid:9606)]

 Score = 85 (35.0 bits), Expect = 0.00073, P = 0.00072
 Identities = 18/54 (33%), Positives = 32/54 (59%)

Query:    16 IGLGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
             + +G +F + TD+  +AF+ A+  HN   N +   F L  +VD I TA++F ++
Sbjct:    27 VQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 80


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.326   0.137   0.389    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      141       141   0.00091  102 3  11 22  0.49    30
                                                     30  0.47    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  549 (58 KB)
  Total size of DFA:  116 KB (2077 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.99u 0.08s 14.07t   Elapsed:  00:00:13
  Total cpu time:  13.99u 0.08s 14.07t   Elapsed:  00:00:13
  Start:  Thu Aug 15 11:54:45 2013   End:  Thu Aug 15 11:54:58 2013

GO:0032281 "alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid selective glutamate receptor complex" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q03445	GLK1_DROME	No assigned EC number	0.7424	0.4609	0.0655	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	141
cd06380	382	cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isole	5e-11
cd06368	324	cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leuc	1e-06
cd06387	372	cd06387, PBP1_iGluR_AMPA_GluR3, N-terminal leucine	0.001
cd06388	371	cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine	0.001

>gnl|CDD|107375 cd06380, PBP1_iGluR_AMPA, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

 Score = 58.5 bits (142), Expect = 5e-11
 Identities = 19/53 (35%), Positives = 33/53 (62%), Gaps = 1/53 (1%)

Query: 18 LGAIFEQGTDEVQSAFKFAMLTHN-QNTTTRRFELQAYVDVINTADAFKLSRL 69
          +G +F+   D+  SAF+FA+  HN    +T  F+L  +VD ++T+D+F L+  
Sbjct: 2  IGGLFDVDEDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNA 54

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current. Length = 382

>gnl|CDD|107363 cd06368, PBP1_iGluR_non_NMDA_like, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 1/52 (1%)

Query: 18 LGAIFEQGTDEVQSAFKFAMLTHNQN-TTTRRFELQAYVDVINTADAFKLSR 68
          +GAIF++   + + AF+FA+   N N     +F L   +D +NT D+F+L+ 
Sbjct: 2  IGAIFDEDARQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTN 53

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. Non-NMDA receptors have faster kinetics, are most often only weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute several forms of synaptic plasticity and are thought to play an important role in the development of synaptic pathways. Non-NMDA receptors include alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate (AMPA) and kainate receptors. Length = 324

>gnl|CDD|107382 cd06387, PBP1_iGluR_AMPA_GluR3, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 18/52 (34%), Positives = 34/52 (65%), Gaps = 2/52 (3%)

Query: 18 LGAIFEQGTDEVQSAFKFA--MLTHNQNTTTRRFELQAYVDVINTADAFKLS 67
          +G +F + T +  SAF+FA  +   NQNTT + F L  +VD ++++++F ++
Sbjct: 2  IGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVT 53

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 372

>gnl|CDD|107383 cd06388, PBP1_iGluR_AMPA_GluR4, N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 18/52 (34%), Positives = 31/52 (59%), Gaps = 2/52 (3%)

Query: 18 LGAIFEQGTDEVQSAFKFAMLTHNQ--NTTTRRFELQAYVDVINTADAFKLS 67
          +G +F + TD+  +AF+ A+  HN   N +   F L  +VD I TA++F ++
Sbjct: 2  IGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVT 53

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs). Length = 371

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	141
cd06387	372	PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucin	99.61
cd06389	370	PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucin	99.59
cd06388	371	PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucin	99.57
cd06390	364	PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucin	99.56
cd06377	382	PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/	99.51
cd06392	400	PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/v	99.44
cd06391	400	PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/v	99.27
cd06380	382	PBP1_iGluR_AMPA N-terminal leucine/isoleucine/vali	99.2
cd06394	333	PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleu	98.97
cd06381	363	PBP1_iGluR_delta_like N-terminal leucine/isoleucin	98.95
KOG1054|consensus	897		98.91
cd06393	384	PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isol	98.8
cd06351	328	PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleuc	98.68
cd06383	368	PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine	98.64
cd06379	377	PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/	98.44
cd06382	327	PBP1_iGluR_Kainate N-terminal leucine/isoleucine/v	98.43
cd06368	324	PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleu	98.36
cd06367	362	PBP1_iGluR_NMDA N-terminal leucine/isoleucine/vali	98.14
cd06370	404	PBP1_Speract_GC_like Ligand-binding domain of memb	96.55
cd06269	298	PBP1_glutamate_receptors_like Family C G-protein c	96.38
cd06366	350	PBP1_GABAb_receptor Ligand-binding domain of GABAb	96.36
cd06375	458	PBP1_mGluR_groupII Ligand binding domain of the gr	96.24
cd06376	463	PBP1_mGluR_groupIII Ligand-binding domain of the g	96.24
PF01094	348	ANF_receptor: Receptor family ligand binding regio	96.14
cd06365	469	PBP1_Pheromone_receptor Ligand-binding domain of t	96.04
cd06372	391	PBP1_GC_G_like Ligand-binding domain of membrane g	95.64
cd06386	387	PBP1_NPR_C_like Ligand-binding domain of type C na	95.61
cd06378	362	PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/	94.88
cd06362	452	PBP1_mGluR Ligand binding domain of the metabotrop	94.18
cd06373	396	PBP1_NPR_like Ligand binding domain of natriuretic	93.87
cd06371	382	PBP1_sensory_GC_DEF_like Ligand-binding domain of	93.83
cd06352	389	PBP1_NPR_GC_like Ligand-binding domain of membrane	93.06
cd06385	405	PBP1_NPR_A Ligand-binding domain of type A natriur	92.67
cd06348	344	PBP1_ABC_ligand_binding_like_13 Type I periplasmic	92.15
PF13433	363	Peripla_BP_5: Periplasmic binding protein domain;	91.24
cd04509	299	PBP1_ABC_transporter_GCPR_C_like Family C of G-pro	90.22
cd06340	347	PBP1_ABC_ligand_binding_like_6 Type I periplasmic	89.48
cd06364	510	PBP1_CaSR Ligand-binding domain of the CaSR calciu	89.28
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	88.98
cd06330	346	PBP1_Arsenic_SBP_like Periplasmic solute-binding d	87.03
cd06331	333	PBP1_AmiC_like Type I periplasmic components of am	87.01
cd06374	472	PBP1_mGluR_groupI Ligand binding domain of the gro	86.88
cd06363	410	PBP1_Taste_receptor Ligand-binding domain of the T	86.82
cd06350	348	PBP1_GPCR_family_C_like Ligand-binding domain of m	86.33
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	84.26
cd06345	344	PBP1_ABC_ligand_binding_like_10 Type I periplasmic	82.44
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	81.87

>cd06387 PBP1_iGluR_AMPA_GluR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA receptor

Probab=99.61  E-value=4.2e-16  Score=133.38  Aligned_cols=80  Identities=20%  Similarity=0.322  Sum_probs=68.9

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhccc-Ccc-eeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC-------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRR-FELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS-------   84 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~-f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~-------   84 (141)
                      .|||||+++++++|.||++||+++|++++ .++ ++|+|+|++++++|||++++++|+|+   ++|||||+++       
T Consensus         1 ~iG~iF~~~~~~~~~aF~~Av~~~N~~~~~~~~~~~l~~~i~~~~~~dsf~~~~~~C~l~~~GV~AIfGp~~~~s~~~v~   80 (372)
T cd06387           1 SIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMSMNTLT   80 (372)
T ss_pred             CcceeecCCcHHHHHHHHHHHHHhcccccccccCeEEEEeeEEecCCChHHHHHHHHHHhhcccEEEEecCCHhHHHHHH
Confidence            38999999999999999999999999874 333 79999999999999999999999999   7888888654       


Q ss_pred             ----CCCcchhhhhcC
Q psy2803          85 ----SPNLINFMTRLG   96 (141)
Q Consensus        85 ----~~~~~~~~~~~~   96 (141)
                          ..++||...+..
T Consensus        81 s~c~~~~iP~i~~~~~   96 (372)
T cd06387          81 SFCGALHTSFITPSFP   96 (372)
T ss_pred             HhhccccCCeeeeCCC
Confidence                557888766543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR3 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor

Probab=99.59  E-value=1.1e-15  Score=128.79  Aligned_cols=75  Identities=17%  Similarity=0.349  Sum_probs=66.4

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC--------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS--------   85 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~--------   85 (141)
                      +|||||+++++++|.||++||+++|++    +++|+|++++++++|||++++++|+||   +.|+|||+.|+        
T Consensus         1 ~ig~if~~~~~~~~~af~~a~~~~n~~----~~~l~~~~~~~~~~dsf~~~~~~C~~~~~GV~AI~Gp~ss~~~~~v~~i   76 (370)
T cd06389           1 QIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKSVNTITSF   76 (370)
T ss_pred             CCceeecCCchHHHHHHHHHHHHhccc----CceeeeeeEEecccchHHHHHHHHHHhhcCcEEEEecCCHHHHHHHHHh
Confidence            589999999899999999999999986    379999999999999999999999999   88999988764        


Q ss_pred             ---CCcchhhhhc
Q psy2803          86 ---PNLINFMTRL   95 (141)
Q Consensus        86 ---~~~~~~~~~~   95 (141)
                         .++|++..+.
T Consensus        77 ~~~~~IP~I~~~~   89 (370)
T cd06389          77 CGTLHVSFITPSF   89 (370)
T ss_pred             hccCCCCeeeecC
Confidence               4677776543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor

Probab=99.57  E-value=1.8e-15  Score=128.13  Aligned_cols=79  Identities=22%  Similarity=0.360  Sum_probs=69.3

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhccc-C-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-T-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS------   85 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~------   85 (141)
                      +|||||++++++++.||++||+++|++++ . .+++|++++++++++|||++++++|+||   +.|+|||+.|.      
T Consensus         1 ~iG~if~~~~~~~~~af~~a~~~~n~~~~~~~~~~~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~ss~~~~~v~   80 (371)
T cd06388           1 QIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKRSVHTLT   80 (371)
T ss_pred             CCceeecCCchHHHHHHHHHHHHhhccccccccceEEeeeeeecCCCChhHHHHHHHHHHhCCceEEEecCCHHHHHHHH
Confidence            59999999889999999999999998863 2 3389999999999999999999999999   89999998774      


Q ss_pred             -----CCcchhhhhc
Q psy2803          86 -----PNLINFMTRL   95 (141)
Q Consensus        86 -----~~~~~~~~~~   95 (141)
                           -++||+..+.
T Consensus        81 ~i~~~~~IP~I~~~~   95 (371)
T cd06388          81 SFCSALHISLITPSF   95 (371)
T ss_pred             HHhhCCCCCeeecCc
Confidence                 4688887654

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06390 PBP1_iGluR_AMPA_GluR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA receptor

Probab=99.56  E-value=2e-15  Score=127.93  Aligned_cols=73  Identities=15%  Similarity=0.317  Sum_probs=64.3

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC---------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS---------   84 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~---------   84 (141)
                      +|||||+++++++|.||++||+++|+++     +|+|++++++++|||++++++|+|+   ++|||||+++         
T Consensus         1 ~iG~if~~~~~~~~~af~~av~~~N~~~-----~l~~~~~~~~~~dsf~~~~~~C~~~~~gV~AI~Gp~s~~~a~~v~si   75 (364)
T cd06390           1 QIGGLFPNQQSQEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYTFCSQFSKGVYAIFGFYDRKTVNMLTSF   75 (364)
T ss_pred             CCceeeCCCChHHHHHHHHHHHHhccCc-----ccccceEEeccccHHHHHHHHHHHhhcCceEEEccCChhHHHHHHHh
Confidence            5999999999999999999999999875     8899999999999999999999999   7888888654         


Q ss_pred             --CCCcchhhhh
Q psy2803          85 --SPNLINFMTR   94 (141)
Q Consensus        85 --~~~~~~~~~~   94 (141)
                        ..++||+..+
T Consensus        76 c~~~~vP~i~~~   87 (364)
T cd06390          76 CGALHVCFITPS   87 (364)
T ss_pred             hcCCCCCceecC
Confidence              4567777543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR1 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).

>cd06377 PBP1_iGluR_NMDA_NR3 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family

Probab=99.51  E-value=1.9e-14  Score=125.38  Aligned_cols=90  Identities=14%  Similarity=0.156  Sum_probs=74.2

Q ss_pred             cchhhhhhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHH
Q psy2803           3 PQKEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVT   77 (141)
Q Consensus         3 ~~~~~~~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a   77 (141)
                      ||.-..-.-.+..|+|||||+++ +++|.||++||+++|+++.+ .+++|++++++++++|||++++++|+++    |+|
T Consensus         6 ~~~~~~~~~~~~~i~iG~if~~~-~~~~~af~~Av~~~N~~~~l~~~~~L~~~~~~~~~~dsf~~~~~vC~~ll~~GV~A   84 (382)
T cd06377           6 PQPCQVLARIGHTVRLGALLVRA-PAPRDRVLAALARANRAPLLPYNLSLEVVAAAAPSRDPASLLRSVCQTVVVQGVSA   84 (382)
T ss_pred             CCCCchhhhcCCceeeeEEecCC-chHHHHHHHHHHHhccccccccCceeEEeEEEcCCCChHHHHHHHHHhHhhCCeEE
Confidence            44444444556779999999988 78899999999999998764 4599999999999999999999999995    689


Q ss_pred             hccc-CC-----------CCCCcchhhh
Q psy2803          78 NLMS-LH-----------SSPNLINFMT   93 (141)
Q Consensus        78 ~~~~-~~-----------~~~~~~~~~~   93 (141)
                      +||+ +.           +.-++||+..
T Consensus        85 Ifg~p~s~~~~~~v~sic~~l~IP~I~~  112 (382)
T cd06377          85 LLAFPQTRPELVQLDFVSAALEIPVVSI  112 (382)
T ss_pred             EEecCCCHHHHHHHHHHhcCCCCCEEEe
Confidence            9995 43           4456777776

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR3 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06392 PBP1_iGluR_delta_1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family

Probab=99.44  E-value=9.2e-14  Score=120.79  Aligned_cols=76  Identities=16%  Similarity=0.278  Sum_probs=67.5

Q ss_pred             EeEEecCCChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC----------
Q psy2803          18 LGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH----------   83 (141)
Q Consensus        18 IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~----------   83 (141)
                      |||||+++++++|.||++||+.+|++++ +++++|++++++++..|||.+++++|+||   +.|||||..          
T Consensus         2 iG~if~~~~~~~~~af~~Av~~~N~~~~~l~~~~L~~~~~~~~~~d~F~~~~~ac~l~~~gV~AI~Gp~s~~~a~~v~si   81 (400)
T cd06392           2 IGAIFEENAAKDDRVFQLAVSDLSLNDDILQSEKITYSIKSIEANNPFQAVQEACDLMTQGILALVTSTGCASANALQSL   81 (400)
T ss_pred             eeeccCCCchHHHHHHHHHHHHhccCccccCCceEEEEEEecCCCChhHHHHHHHHHHhcCeEEEECCCchhHHHHHHHH
Confidence            8999999999999999999999998875 46699999999999999999999999999   788888754          


Q ss_pred             -CCCCcchhhh
Q psy2803          84 -SSPNLINFMT   93 (141)
Q Consensus        84 -~~~~~~~~~~   93 (141)
                       ...++||+..
T Consensus        82 c~~l~VP~is~   92 (400)
T cd06392          82 TDAMHIPHLFV   92 (400)
T ss_pred             hccCcCCcEee
Confidence             4567888875

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta1 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 may be closer related to non-NMDA receptors. In contrast to GluRdelta2, GluRdel

>cd06391 PBP1_iGluR_delta_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family

Probab=99.27  E-value=4.1e-12  Score=109.41  Aligned_cols=76  Identities=18%  Similarity=0.347  Sum_probs=67.1

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhccc-----------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMS-----------   81 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~-----------   81 (141)
                      .|||||+.++...+.||++||+.+|+++. ++.++|.+.+.+++++|+|.+.+++|+|+   +.|+|||           
T Consensus         1 ~IGaif~~~s~~~~~Af~~Ai~~iN~~~~~l~~~~l~~~~~~~d~~d~f~a~~~~c~l~~~gv~ai~Gp~~~~~~~~v~~   80 (400)
T cd06391           1 HIGAIFDESAKKDDEVFRMAVADLNQNNEILQTEKITVSVTFVDGNNPFQAVQEACELMNQGILALVSSIGCTSAGSLQS   80 (400)
T ss_pred             CcceeeccCCchHHHHHHHHHHHhcCCccccCCCcceEEEEEeeCCCcHHHHHHHHHHHhCCeEEEECCCcchHHHHHHH
Confidence            48999999998999999999999998875 45689999999999999999999999999   6789998           


Q ss_pred             CCCCCCcchhh
Q psy2803          82 LHSSPNLINFM   92 (141)
Q Consensus        82 ~~~~~~~~~~~   92 (141)
                      ++...++||+.
T Consensus        81 ~~~~~~vP~i~   91 (400)
T cd06391          81 LADAMHIPHLF   91 (400)
T ss_pred             HhccCcCCeEE
Confidence            55556888884

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as a

>cd06380 PBP1_iGluR_AMPA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA receptor

Probab=99.20  E-value=1.6e-11  Score=101.60  Aligned_cols=70  Identities=30%  Similarity=0.502  Sum_probs=62.6

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      +|||||+.++...+.||++||+++|..... +.++|.+.+.+++.+|+|++++++|+++   +.|++||++|..
T Consensus         1 ~iG~if~~~~~~~~~a~~~Av~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~ll~~~V~aiiGp~~s~~   74 (382)
T cd06380           1 PIGGLFDVDEDQEYSAFRFAISQHNTNPNSTAPFKLLPHVDNLDTSDSFALTNAICSQLSRGVFAIFGSYDKSS   74 (382)
T ss_pred             CceeEECCCChHHHHHHHHHHHHhcccccccCCeeeeeeeeEecccchHHHHHHHHHHHhcCcEEEEecCcHHH
Confidence            599999999889999999999999987543 5689999999999999999999999999   788999987653

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excita

>cd06394 PBP1_iGluR_Kainate_KA1_2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor

Probab=98.97  E-value=9e-10  Score=93.31  Aligned_cols=69  Identities=12%  Similarity=0.103  Sum_probs=61.9

Q ss_pred             eEeEEecCCC---hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          17 GLGAIFEQGT---DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        17 ~IGaIFd~~d---~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      +||+|||.++   ...+.||++||+++|.+.. ..+++|+..++..+.+++|++++++|+++   +.|||||+.|.
T Consensus         1 ~iG~i~d~~s~~G~~~~~a~~lAv~~iN~~~~~~~~~~l~~~~~d~~~d~~f~~~~~~~~~l~~gV~AIiGp~ss~   76 (333)
T cd06394           1 RIAAILDDPMECGRGERLALALARERINRAPERLGKARVEVDIFELLRDSQYETTDTMCQILPKGVVSVLGPSSSP   76 (333)
T ss_pred             CceeeecCCccccHHHHHHHHHHHHHhccCccccCCceeEEEEeeccccChHHHHHHHHHHHhcCeEEEECCCCch
Confidence            5999999988   8899999999999998754 34479999999999999999999999999   78999999884

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the KA1 and KA2 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels act

>cd06381 PBP1_iGluR_delta_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2

Probab=98.95  E-value=8.2e-10  Score=93.81  Aligned_cols=70  Identities=19%  Similarity=0.274  Sum_probs=61.3

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      +|||||+.++.+.+.||++|+...|.++.. ...++.+.+.+.+.+|+|++.+++|+|+   +.|+|||.++.+
T Consensus         1 ~IG~if~~~~~~~~~af~~ala~~~iN~~gg~~~~~i~~v~~dd~~d~~~a~~~~c~Li~~gV~AI~G~~~s~~   74 (363)
T cd06381           1 HIGAIFSESALEDDEVFAVAVIDLNINEQILQTEKITLSISFIDLNNHFDAVQEACDLMNQGILALVTSTGCAS   74 (363)
T ss_pred             CeeeeccCCcchHHHHHHHHHHHhhccccccCCccceeeeEeecCCChHHHHHHHHHHHhcCcEEEEecCChhH
Confidence            599999998888899999999999877643 3468899999999999999999999999   788998887754

This CD represents the N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of an orphan family of delta receptors, GluRdelta1 and GluRdelta2. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are more homologous to non-NMDA receptors. G

>KOG1054|consensus

Probab=98.91  E-value=1.4e-09  Score=101.21  Aligned_cols=78  Identities=24%  Similarity=0.395  Sum_probs=71.2

Q ss_pred             hhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC
Q psy2803           9 ISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH   83 (141)
Q Consensus         9 ~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~   83 (141)
                      .+..|..|.||++|..+++++..|||+|+...|.+++.  .+++|.|+++.++..+||.+..+.|+|+   ++|+||.++
T Consensus        20 ~G~f~~tiqigglF~~n~~qe~~Afr~~~~~~~~~~~~~~~pf~L~~~~d~~e~a~Sf~~tnafCsq~s~Gv~Aifg~yd   99 (897)
T KOG1054|consen   20 HGAFPNTIQIGGLFPRNTDQEHSAFRFAVQLYNTNQNTTEKPFKLNPHVDNLESANSFAVTNAFCSQFSRGVYAIFGFYD   99 (897)
T ss_pred             cccCCCceeeccccCCcchHHHHHHHHHHHHhhcCCCCCCCCcccccccchhhhhhhHHHHHHHHHHHhhhHhhheeccc
Confidence            45688999999999999999999999999999987653  4599999999999999999999999999   899999999


Q ss_pred             CCC
Q psy2803          84 SSP   86 (141)
Q Consensus        84 ~~~   86 (141)
                      ..+
T Consensus       100 ~ks  102 (897)
T KOG1054|consen  100 KKS  102 (897)
T ss_pred             ccc
Confidence            875

>cd06393 PBP1_iGluR_Kainate_GluR5_7 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor

Probab=98.80  E-value=5.5e-09  Score=87.60  Aligned_cols=72  Identities=24%  Similarity=0.284  Sum_probs=61.7

Q ss_pred             eeeEeEEecCCC-------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCC
Q psy2803          15 HIGLGAIFEQGT-------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLH   83 (141)
Q Consensus        15 ~I~IGaIFd~~d-------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~   83 (141)
                      .|+||+||+..+       ...+.||++||++||++... +..+|.++++.++..|+|.+.+++|+++   +.|++||++
T Consensus         2 ~i~IG~i~~~~tg~~~~~g~~~~~a~~~Av~~IN~~~~il~~~~l~~~~~~~~~~d~~~~~~~~~~~l~~~V~AiiGp~~   81 (384)
T cd06393           2 VIRIGGIFEYLDGPNNQVMSAEELAFRFSANIINRNRTLLPNTTLTYDIQRIHFHDSFEATKKACDQLALGVVAIFGPSQ   81 (384)
T ss_pred             eeeEEEeecCCcccccccCcHHHHHHHHHHHHhcCCCccCCCceEEEEEEecccccchhHHHHhhcccccCcEEEECCCC
Confidence            589999998422       34789999999999988764 5589999999999999999999999987   788999988


Q ss_pred             CCC
Q psy2803          84 SSP   86 (141)
Q Consensus        84 ~~~   86 (141)
                      |++
T Consensus        82 S~~   84 (384)
T cd06393          82 GSC   84 (384)
T ss_pred             hHH
Confidence            754

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR5-7 subunits of Kainate receptor. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. There are five types of kainate receptors, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeric receptor channels activated

>cd06351 PBP1_iGluR_N_LIVBP_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs)

Probab=98.68  E-value=3.8e-08  Score=77.73  Aligned_cols=80  Identities=23%  Similarity=0.264  Sum_probs=66.1

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCC-------
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHS-------   84 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~-------   84 (141)
                      +||+||+.++...+.||++|++.+|.+... +.+++...+..++.+|++.+.+++|+++    +.|++||..+       
T Consensus         1 ~iG~i~~~~~~~~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~~~~~~d~~~~~~~~c~l~~~~~v~ai~G~~~s~~~~~v~   80 (328)
T cd06351           1 NIGAIFDRDARKEELAFRAAIDALNTENLNALPTKLSVEVVEVNTNDPFSLLRAVCDLLVSQGVAAIFGPTSSESASAVQ   80 (328)
T ss_pred             CeeeecCCCcHHHHHHHHHHHHHhccCccccCCeeEEEEEEEeCCCChHHHHHHHHHHHhccCcEEEECCCCHHHHHHHH
Confidence            499999998888899999999999988653 4578999999999999999999999998    5778888776       


Q ss_pred             ----CCCcchhhhhcC
Q psy2803          85 ----SPNLINFMTRLG   96 (141)
Q Consensus        85 ----~~~~~~~~~~~~   96 (141)
                          ..++|++-..-+
T Consensus        81 ~~~~~~~iP~is~~~~   96 (328)
T cd06351          81 SICDALEIPHISISGG   96 (328)
T ss_pred             HHhccCCCCeEEeecC
Confidence                445666655433

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NMDA, AMPA, and kainate receptor subtypes of ionotropic glutamate receptors (iGluRs). While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors characterized by their response to glutamate agonists: N-methyl-aspartate (NMDA) and non-NMDA receptors

>cd06383 PBP1_iGluR_AMPA_Like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors

Probab=98.64  E-value=3.8e-08  Score=83.86  Aligned_cols=65  Identities=14%  Similarity=-0.010  Sum_probs=51.2

Q ss_pred             EecCCChHHHHHHHHHHHHhhhccc---CcceeEEEEEEeeCCCChhHHHHHHHHHH---H--HHhcccCCCC
Q psy2803          21 IFEQGTDEVQSAFKFAMLTHNQNTT---TRRFELQAYVDVINTADAFKLSRLSIRKM---L--VTNLMSLHSS   85 (141)
Q Consensus        21 IFd~~d~~~ElAFk~AI~~IN~~k~---l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~--~a~~~~~~~~   85 (141)
                      +-+++.++++.||++||+++|+++.   ...+.+++++.+++.+|||.+++++|+||   +  +|+|||..+.
T Consensus         6 ~~~~~~~~~~~A~~~Av~~~N~~~~~~l~~~~~~~~~~~~~~~~d~~~~~~~~C~~~~~gv~~~AIiGp~ss~   78 (368)
T cd06383           6 MTEDDNDVYKQIIDDALSYINRNIGTGLSVVHQQVETNAEVNRNDVKVALIEVCDKADSAIVPHLVLDTTTCG   78 (368)
T ss_pred             ecccchHHHHHHHHHHHHHHhcCCCCceEEEEecccccccccCCcHHHHHHHHHHHHHccCCcEEEECCCcch
Confidence            4445567889999999999998852   12256666667779999999999999999   4  6999997543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of uncharacterized AMPA-like receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.

>cd06379 PBP1_iGluR_NMDA_NR1 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor

Probab=98.44  E-value=4.6e-07  Score=75.36  Aligned_cols=69  Identities=13%  Similarity=0.219  Sum_probs=54.1

Q ss_pred             hhcccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803           9 ISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM   80 (141)
Q Consensus         9 ~~~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~   80 (141)
                      +.+.+..|+||+||+  ....+.||++||+++|++... ..++|.+....++ .|+++++..+|++|    +.|+++
T Consensus        13 ~~~~~~~i~IG~i~~--~~~~~~~~~~Ai~~~N~~~~~~~~~~l~~~~i~~~-~~~~~~a~~~~~~Li~~~V~aii~   86 (377)
T cd06379          13 AGCSPKTVNIGAVLS--NKKHEQEFKEAVNAANVERHGSRKIKLNATTITHD-PNPIQTALSVCEQLISNQVYAVIV   86 (377)
T ss_pred             cCCCCcEEEEeEEec--chhHHHHHHHHHHHHhhhhcCCcceeeccceEeec-CChhhHHHHHHHHHhhcceEEEEE
Confidence            355678899999996  346789999999999997643 3467777766664 69999999999887    577763

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR1, an essential channel-forming subunit of the NMDA receptor. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer ccomposed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. When co-expressed with NR1, the NR3 subunits form receptors that are activated by glycine alone and therefore

>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors

Probab=98.43  E-value=4.6e-07  Score=73.30  Aligned_cols=70  Identities=17%  Similarity=0.283  Sum_probs=59.1

Q ss_pred             eEeEEec-CCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          17 GLGAIFE-QGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd-~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      +||+||+ ......+.|+++||++||+.... +..+|...+.....+|++.+.+++|+++   +.|++|+.+|+.
T Consensus         1 ~iG~i~~~~~g~~~~~a~~lAv~~iN~~ggil~g~~l~~~~~d~~~~~~~~a~~~~~~li~~~V~aiiG~~~S~~   75 (327)
T cd06382           1 RIGAIFDDDDDSGEELAFRYAIDRINREKELLANTTLEYDIKRVKPDDSFETTKKVCDLLQQGVAAIFGPSSSEA   75 (327)
T ss_pred             CeEEEecCCCchHHHHHHHHHHHHhcccccccCCceEEEEEEEecCCCcHHHHHHhhhhhhcCcEEEECCCChhH
Confidence            5999999 66678899999999999987653 3467888887777789999999999998   788999988764

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri

>cd06368 PBP1_iGluR_non_NMDA_like N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors

Probab=98.36  E-value=9.5e-07  Score=70.85  Aligned_cols=71  Identities=28%  Similarity=0.438  Sum_probs=58.6

Q ss_pred             eEeEEecCCChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCCC
Q psy2803          17 GLGAIFEQGTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSPN   87 (141)
Q Consensus        17 ~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~~   87 (141)
                      +|||||+.+....+.|+++||++||..... ++.+|...+...+.+|++.+.+++|+++   +.|++|+..|...
T Consensus         1 ~iG~i~~~~~~~~~~a~~lAv~~iN~~ggil~~~~l~~~~~d~~~~~~~~a~~~a~~li~~~V~aiiG~~~S~~~   75 (324)
T cd06368           1 RIGAIFDEDARQEELAFRFAIDRINTNEEILAKFTLVPDIDELNTNDSFELTNKACDLLSQGVAAIFGPSSSSSA   75 (324)
T ss_pred             CEEEEeCCCChHHHHHHHHHHHHhcccccccCCceeeeEEEEecCCChHHHHHHHHHHHhcCcEEEECCCCHHHH
Confidence            599999988777889999999999987543 4467777777666789999999999998   6889998877543

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-d-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-d -aspartate (NMDA) and non-NMDA receptors. NMDA receptors

>cd06367 PBP1_iGluR_NMDA N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors

Probab=98.14  E-value=3.2e-06  Score=69.68  Aligned_cols=69  Identities=14%  Similarity=0.207  Sum_probs=57.3

Q ss_pred             eeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEee-CCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          15 HIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVI-NTADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        15 ~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V-~~~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      .++||+||+...  .+.+|+.||..+|.+.+ ..+++...+... +.+|++++.+.+|+++    +.+++|+..|+.
T Consensus         2 ~~~ig~~~~~~~--~~~~~~~a~~~~~~~~~-~~~~~~~~l~~~d~~~d~~~~~~~~~~~l~~~~v~~iig~~~s~~   75 (362)
T cd06367           2 TVNIGVVLSGSS--SEPAFRDAVTAANFRHN-LPYNLSLEAVAVSNDTDPISLLLSVCDLLVVQVVAGVVFSDPTDE   75 (362)
T ss_pred             ceEEEEEecCCc--chhhHHHHhhhcccccc-CCcccceEEEEEecCCCHHHHHHHHHHHhcccceEEEEecCCCCc
Confidence            578999999764  46999999999999876 335777777777 8889999999999999    577888877764

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. The function of the NMDA subtype receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer comprising two NR1 and two NR2 (A, B, C, and D) or NR3 (A and B) subunits

>cd06370 PBP1_Speract_GC_like Ligand-binding domain of membrane bound guanylyl cyclases

Probab=96.55  E-value=0.0055  Score=51.89  Aligned_cols=69  Identities=16%  Similarity=0.059  Sum_probs=52.2

Q ss_pred             eeEeEEecC-C------ChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC
Q psy2803          16 IGLGAIFEQ-G------TDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS   84 (141)
Q Consensus        16 I~IGaIFd~-~------d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~   84 (141)
                      |+||.+.+- +      ......|+++||++||+.... +..++...+..-. .|++.+.+++|+++   +.|++||.+|
T Consensus         1 i~iG~~~pltG~~~a~~G~~~~~a~~lAv~~IN~~ggil~g~~l~l~~~D~~-~~~~~a~~~~~~li~~~v~aiiGp~~S   79 (404)
T cd06370           1 IKVGYLAEWTTDRTDRLGLPISGALTLAVEDVNADPNLLPGYKLQFEWVDTH-GDEVLSIRAVSDWWKRGVVAFIGPECT   79 (404)
T ss_pred             CeeEecccccCCccccccccHHHHHHHHHHHHhCCCCCCCCCEEEEEEEecC-CChHHHHHHHHHHHhcCceEEECCCch
Confidence            467776652 2      123468999999999987644 3467777766544 89999999999998   7899999987


Q ss_pred             C
Q psy2803          85 S   85 (141)
Q Consensus        85 ~   85 (141)
                      +
T Consensus        80 ~   80 (404)
T cd06370          80 C   80 (404)
T ss_pred             h
Confidence            4

Ligand-binding domain of membrane bound guanylyl cyclases (GCs), which are known to be activated by sperm-activating peptides (SAPs), such as speract or resact. These ligand peptides are released by a range of invertebrates to stimulate the metabolism and motility of spermatozoa and are also potent chemoattractants. These GCs contain a single transmembrane segment, an extracellular ligand binding domain, and intracellular protein kinase-like and cyclase catalytic domains. GCs of insect and nematodes, which exhibit high sequence similarity to the speract receptor are also included in this model.

>cd06269 PBP1_glutamate_receptors_like Family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors

Probab=96.38  E-value=0.0047  Score=47.12  Aligned_cols=68  Identities=19%  Similarity=0.079  Sum_probs=50.8

Q ss_pred             eEeEEecCCC--------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeC--CCChhHHHHHHHHH-----HHHHhccc
Q psy2803          17 GLGAIFEQGT--------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVIN--TADAFKLSRLSIRK-----MLVTNLMS   81 (141)
Q Consensus        17 ~IGaIFd~~d--------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~--~~DSFeaSkkaC~q-----l~~a~~~~   81 (141)
                      .||++|+...        .....++..|++.+|..  .+..+|...+....  +.+++...+.+|++     -+.|++||
T Consensus         1 ~iG~~f~~~~~~~~~~~~~~~~~~~~~~~~~~n~~--~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~aiiG~   78 (298)
T cd06269           1 RIGGLFPLHSGGRFGEEGAFRAAAALFAVEEINND--LPNTTLGYEIYDSCCSPSDAFSAALDLCSLLEKSRGVVAVIGP   78 (298)
T ss_pred             CEEEEeecccccccCHHHHHHHHHHHHHHHHHhcc--CCCCeeeeEEEecCCChHHHHHHHHHHHhcCCCCCceEEEECC
Confidence            4899998643        12345677888888765  45568888887776  67899999999998     37889998


Q ss_pred             CCCCC
Q psy2803          82 LHSSP   86 (141)
Q Consensus        82 ~~~~~   86 (141)
                      .++..
T Consensus        79 ~~s~~   83 (298)
T cd06269          79 SSSSS   83 (298)
T ss_pred             CCchH
Confidence            87653

This CD represents the ligand-binding domain of the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases such as the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domain of the ionotropic glutamate receptors, all of which are structurally similar and related to the periplasmic-binding fold type I family. The family C GPCRs consist of metabotropic glutamate receptor (mGluR) receptors, a calcium-sensing receptor (CaSR), gamma-aminobutyric receptors (GABAb), the promiscuous L-alpha-amino acid receptor GPR6A, families of taste and pheromone receptors, and orphan receptors. Truncated splicing va

>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA)

Probab=96.36  E-value=0.0092  Score=48.66  Aligned_cols=69  Identities=19%  Similarity=0.248  Sum_probs=51.2

Q ss_pred             eEeEEecCC----ChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          17 GLGAIFEQG----TDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd~~----d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      +||+|++..    ....+.+++.|++.+|.... .+..++...+.. +..|...+.+.+|+++    +.+++||.+|..
T Consensus         1 ~IG~~~p~sGa~~G~~~~~~~~lAv~~iN~~gg~~~g~~i~~~~~D-~~~~~~~a~~~a~~l~~~~~v~~viG~~~s~~   78 (350)
T cd06366           1 RIGAIFDLSGSWIGKAALPAIEMALEDVNADNSILPGYRLVLHVRD-SKCDPVQAASAALDLLENKPVVAIIGPQCSSV   78 (350)
T ss_pred             CEEEEEecCCCcccHHHHHHHHHHHHHHhcCCCcCCCcEEEEEecC-CCCCHHHHHHHHHHHhccCCceEEECCCcHHH
Confidence            488888754    24568899999999998752 334566665444 3468899999999998    678888877643

Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.

>cd06375 PBP1_mGluR_groupII Ligand binding domain of the group II metabotropic glutamate receptor

Probab=96.24  E-value=0.0054  Score=53.64  Aligned_cols=59  Identities=15%  Similarity=0.095  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHH----------------HHH--------HH---HHHhc
Q psy2803          28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRL----------------SIR--------KM---LVTNL   79 (141)
Q Consensus        28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkk----------------aC~--------ql---~~a~~   79 (141)
                      +...|+.+||++||++..+ ++.+|.+++.....++++.+..+                .|.        +.   +.|++
T Consensus        31 ~~~~Am~~AIe~IN~~~~lLp~~~Lg~~i~Dtc~~~~~a~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~~~~~~V~aVI  110 (458)
T cd06375          31 QRLEAMLFAIDRINNDPRILPGIKLGVHILDTCSRDTYALEQSLEFVRASLTKVDTSEYECPDGSYAVQENSPLAIAGVI  110 (458)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCceeccEEEecCCCcHHHHHHHHHHHhhhhhcccccccccccCCccccccCCCCeEEEE
Confidence            4577999999999999864 66999999998877787766332                565        22   67788


Q ss_pred             ccCCCCC
Q psy2803          80 MSLHSSP   86 (141)
Q Consensus        80 ~~~~~~~   86 (141)
                      |+..|+.
T Consensus       111 G~~~S~~  117 (458)
T cd06375         111 GGSYSSV  117 (458)
T ss_pred             cCCCchH
Confidence            8877754

Ligand binding domain of the group II metabotropic glutamate receptor, a family that contains mGlu2R and mGlu3R, all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes

>cd06376 PBP1_mGluR_groupIII Ligand-binding domain of the group III metabotropic glutamate receptor

Probab=96.24  E-value=0.0032  Score=54.45  Aligned_cols=58  Identities=17%  Similarity=0.110  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHH---------------HHHH-------H---HHHhcccC
Q psy2803          29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRL---------------SIRK-------M---LVTNLMSL   82 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkk---------------aC~q-------l---~~a~~~~~   82 (141)
                      ...|+++||++||++... +..+|.+++.....+++|.+.++               .|++       .   +.|++|++
T Consensus        32 ~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~~~~~a~~~~~~l~~~~~~~~~C~~~~~~~~~~~~~V~aviG~~  111 (463)
T cd06376          32 RLEAMLYALDQINSDPDLLPNVTLGARILDTCSRDTYALEQSLTFVQALIQKDTSDVRCTNGEPPVFVKPEKVVGVIGAS  111 (463)
T ss_pred             HHHHHHHHHHHhhCCCCCCCCceEccEEEeccCCcHHHHHHHHHHHhhhhhcccccCcCCCCCccccCCCCCeEEEECCC
Confidence            467999999999998764 45899999988777777776644               3663       1   57888888


Q ss_pred             CCCC
Q psy2803          83 HSSP   86 (141)
Q Consensus        83 ~~~~   86 (141)
                      .|+.
T Consensus       112 ~S~~  115 (463)
T cd06376         112 ASSV  115 (463)
T ss_pred             CchH
Confidence            7754

Ligand-binding domain of the group III metabotropic glutamate receptor, a family which contains mGlu4R, mGluR6R, mGluR7, and mGluR8; all of which inhibit adenylyl cyclase. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>PF01094 ANF_receptor: Receptor family ligand binding region The Prosite family is a sub-family of the Pfam family; InterPro: IPR001828 This describes a ligand binding domain and includes extracellular ligand binding domains of a wide range of receptors, as well as the bacterial amino acid binding proteins of known structure []

Probab=96.14  E-value=0.009  Score=47.34  Aligned_cols=57  Identities=23%  Similarity=0.151  Sum_probs=48.9

Q ss_pred             HHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          29 VQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      ...|+++|++++|++.. .+.++|...+.....++++......|.+.   +.|++||.+++
T Consensus         2 ~~~a~~~Ai~~iN~~~~~~~~~~l~~~~~d~~~~~~~~~~~~~~~~~~~~v~aviGp~~~~   62 (348)
T PF01094_consen    2 VLAAVQLAIDEINNNPDLLPNITLEVQVFDTCSDDSFALQAAICSLNKQGVVAVIGPSCSS   62 (348)
T ss_dssp             HHHHHHHHHHHHHHSSTSSTTSEEEEEEEEETTTTHHHHHHHHHHHHHHTECEEEETSSHH
T ss_pred             HHHHHHHHHHHHHcCCCCCCCeEEEEEEEeeccCCcccccchhhhccCCCcEEEECCCccc
Confidence            46799999999999876 45589999888777789999999999987   57899999877

; PDB: 3SAJ_D 3Q41_B 3QEM_C 3QEK_A 3QEL_C 3MQ4_A 3QLV_G 3OM1_A 3QLU_A 3OM0_A ....

>cd06365 PBP1_Pheromone_receptor Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=96.04  E-value=0.0027  Score=55.54  Aligned_cols=61  Identities=18%  Similarity=0.075  Sum_probs=46.6

Q ss_pred             ChHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHH--------------HHHHHHH--HHHhcccCCCCC
Q psy2803          26 TDEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLS--------------RLSIRKM--LVTNLMSLHSSP   86 (141)
Q Consensus        26 d~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaS--------------kkaC~ql--~~a~~~~~~~~~   86 (141)
                      ..+...|+.+||++||+++. +++++|.+++.....++++.+.              +..|+..  +.|++|+..|+.
T Consensus        38 ~~~~~~Am~~Ai~~IN~~~~lLp~~~Lg~~i~dtc~~~~~a~~~~~~~~~~~~~~~~~~~C~~~~~vvavIG~~~S~~  115 (469)
T cd06365          38 NYQHVLALLFAIEEINKNPHLLPNISLGFHIYNVLHSDRKALESSLMWLSGEGETIPNYSCRRQRKSVAVIGGPSWAL  115 (469)
T ss_pred             hhHHHHHHHHHHHHHhCCCCCCCCceEEEEEECCCCccHHHHHHHHHHHhCCCcccCCccCCCCCceEEEEcCCccHH
Confidence            34567799999999999886 4669999999988888888875              4556544  566777776653

Ligand-binding domain of the V2R phermone receptor, a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptor, the GABAb receptor, the calcium-sensing receptor (CaSR), the T1R taste receptor, and a small group of uncharacterized orphan receptors.

>cd06372 PBP1_GC_G_like Ligand-binding domain of membrane guanylyl cyclase G

Probab=95.64  E-value=0.031  Score=46.72  Aligned_cols=57  Identities=12%  Similarity=0.094  Sum_probs=44.5

Q ss_pred             HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCC-CChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINT-ADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~-~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      ....|+++|+++||+.... +..+|...  ..+. .|+..+.+.+|+++    +.|++||.+|+.
T Consensus        18 ~~~~a~~lAi~~IN~~~~~l~~~~l~~~--~~D~~~~~~~a~~~~~~l~~~~~v~aiiGp~~S~~   80 (391)
T cd06372          18 RLGAALQIAMDKVNSDPVYLGNYSMEFT--YTNSTCSAKESLAGFIDQVQKEHISALFGPACPEA   80 (391)
T ss_pred             hHHHHHHHHHHHHhcCCCCCCCceEEEE--EecCCCCccHHHHHHHHHHHhcCceEEECCCCCcH
Confidence            3457999999999998653 44677654  3343 58899999999998    678999999865

This group includes the ligand-binding domain of membrane guanylyl cyclase G (GC-G) which is a sperm surface receptor and might function, similar to its sea urchin counterpart, in the early signaling event that regulates the Ca2+ influx/efflux and subsequent motility response in sperm. GC-G appears to be a pseudogene in human. Furthermore, in contrast to the other orphan receptor GCs, GC-G has a broad tissue distribution in rat, including lung, intestine, kidney, and skeletal muscle.

>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor

Probab=95.61  E-value=0.015  Score=49.26  Aligned_cols=60  Identities=15%  Similarity=0.105  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCC--hhHHHHHHHHHHHHHhcccCCCCC
Q psy2803          27 DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTAD--AFKLSRLSIRKMLVTNLMSLHSSP   86 (141)
Q Consensus        27 ~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~D--SFeaSkkaC~ql~~a~~~~~~~~~   86 (141)
                      ...+.|+++|+++||++... +..+|...+..-.-++  ++.+.+++|+.-+.|++||.+|..
T Consensus        17 ~~~~~a~~lAie~IN~~~~ll~g~~l~~~~~d~~~~~~~~~~~~~~l~~~~v~aiiGp~~s~~   79 (387)
T cd06386          17 ARVAPAIEYAQRRLEANRLLFPGFRFNVHYEDSDCGNEALFSLVDRSCARKPDLILGPVCEYA   79 (387)
T ss_pred             hhhHHHHHHHHHHHhcCCCCCCCcEEEEEEeCCcCCchHHHHHHHHHHhhCCCEEECCCCccH
Confidence            45678999999999987653 5578888777665544  788889999866789999998875

Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.

>cd06378 PBP1_iGluR_NMDA_NR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family

Probab=94.88  E-value=0.016  Score=49.52  Aligned_cols=67  Identities=3%  Similarity=0.035  Sum_probs=45.0

Q ss_pred             eeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HH-HhcccCCCC
Q psy2803          16 IGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LV-TNLMSLHSS   85 (141)
Q Consensus        16 I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~-a~~~~~~~~   85 (141)
                      +.|+.|+.... -.+.+.+-+-..-+-.  .+..++.+++.+|+.+|+|++.+++|++|    |. ++|||..+.
T Consensus         3 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~~vC~ll~~~~V~aiIfgp~~~~   74 (362)
T cd06378           3 LNIAVVLSGTN-SSTAFLRGRLTKEDFL--DLPLDVNVVTLLVNETDPKSILTQLCDLLSTTKVHGVVFEDDTDQ   74 (362)
T ss_pred             ceEEEEecCCC-cchhhhcccccccccc--CCCCCccceeeecCCCCHHHHHHHHHHHhcccceEEEEecCCCCc
Confidence            56888886542 1222333222111111  14478899999999999999999999999    44 477998876

N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the NR2 subunit of NMDA receptor family. The ionotropic N-methyl-d-asparate (NMDA) subtype of glutamate receptor serves critical functions in neuronal development, functioning, and degeneration in the mammalian central nervous system. The functional NMDA receptor is a heterotetramer composed of two NR1 and two NR2 (A, B, C, and D) or of NR3 (A and B) subunits. The receptor controls a cation channel that is highly permeable to monovalent ions and calcium and exhibits voltage-dependent inhibition by magnesium. Dual agonists, glutamate and glycine, are required for efficient activation of the NMDA receptor. Among NMDA receptor subtypes, the NR2B subunit containing receptors appear particularly important for pain perception; thus NR2B-selective antagonists may be useful in

>cd06362 PBP1_mGluR Ligand binding domain of the metabotropic glutamate receptors (mGluR)

Probab=94.18  E-value=0.058  Score=46.09  Aligned_cols=39  Identities=23%  Similarity=0.203  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHH
Q psy2803          29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLS   67 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaS   67 (141)
                      ...|+++||++||+.... +..+|...+..-..+++..+.
T Consensus        32 ~~~a~~~Aie~IN~~~~iLpg~~L~~~i~D~~~~~~~a~~   71 (452)
T cd06362          32 RLEAMLFALDEINNDPTLLPGITLGAHILDTCSRDTYALE   71 (452)
T ss_pred             HHHHHHHHHHHhhCCCCCCCCCeeCcEEEEeCCCchHHHH
Confidence            478999999999998754 457888888765545555443

Ligand binding domain of the metabotropic glutamate receptors (mGluR), which are members of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses. mGluRs bind to glutamate and function as an excitatory neurotransmitter; they are involved in learning, memory, anxiety, and the perception of pain. Eight subtypes of mGluRs have been cloned so far, and are classified into three groups according to their sequence similarities, transduction mechanisms, and pharmacological profiles. Group I is composed of mGlu1R and mGlu5R that both stimulate PLC hydrolysis. Group II includes mGlu2R and mGlu3R, which inhibit adenylyl cyclase, as do mGlu4R, mGlu6R, mGlu7R, and mGlu8R, which form group III.

>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family

Probab=93.87  E-value=0.17  Score=42.36  Aligned_cols=69  Identities=9%  Similarity=-0.042  Sum_probs=46.7

Q ss_pred             EeEEecCCC-------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCC----CChhHHHHHHHHHH---HHHhcccC
Q psy2803          18 LGAIFEQGT-------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINT----ADAFKLSRLSIRKM---LVTNLMSL   82 (141)
Q Consensus        18 IGaIFd~~d-------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~----~DSFeaSkkaC~ql---~~a~~~~~   82 (141)
                      ||.++....       .....|++.|+++||.... ++..++...+..-..    +++..+....|.+.   +.|++||.
T Consensus         2 ~g~l~p~~~~~~~~~~~~~~~a~~lAve~IN~~gg~l~G~~l~~~~~D~~~~~~~~~~~a~~~a~~~~~~~~v~aiiGp~   81 (396)
T cd06373           2 LAVLLPKNNTSYPWSLPRVGPAIDIAVERVNADPGLLPGHNITLVFEDSECKCGCSESEAPLVAVDLYFQHKPDAFLGPG   81 (396)
T ss_pred             eEEEcCCCCCCcccchhhhhhHHHHHHHHHhcCCCcCCCeEEEEEEecCccccccchhhhHHHHHHHHhccCCeEEECCC
Confidence            677775432       2456799999999998764 334566665554333    35666666666554   68899999


Q ss_pred             CCCC
Q psy2803          83 HSSP   86 (141)
Q Consensus        83 ~~~~   86 (141)
                      +|..
T Consensus        82 ~S~~   85 (396)
T cd06373          82 CEYA   85 (396)
T ss_pred             ccch
Confidence            8866

Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli

>cd06371 PBP1_sensory_GC_DEF_like Ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues

Probab=93.83  E-value=0.081  Score=44.80  Aligned_cols=54  Identities=11%  Similarity=0.060  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCCC
Q psy2803          28 EVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHSS   85 (141)
Q Consensus        28 ~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~~   85 (141)
                      ..+.|+++||+++|+.... +..+    ++.+..+|++...+++|.++     +.|++||++|.
T Consensus        18 ~~~~a~~lAie~iN~~g~il~g~~----l~~~~~d~~~~~~~a~~~~~~~~~~V~aviGp~~S~   77 (382)
T cd06371          18 LPDVAARLAVSRINRDPSLSLGYW----FDYVLLPEPCETSRALAAFLGYEGYASAFVGPVNPG   77 (382)
T ss_pred             hHHHHHHHHHHHHhCCCCCCCCce----EEEEEecCCCChhHHHHHHHcccCCceEEECCCCch
Confidence            3577999999999987543 2333    33444477788889999988     58899999863

This group includes the ligand-binding domain of membrane guanylyl cyclases (GC-D, GC-E, and GC-F) that are specifically expressed in sensory tissues. They share a similar topology with an N-terminal extracellular ligand-binding domain, a single transmembrane domain, and a C-terminal cytosolic region that contains kinase-like and catalytic domains. GC-D is specifically expressed in a subpopulation of olfactory sensory neurons. GC-E and GC-F are colocalized within the same photoreceptor cells of the retina and have important roles in phototransduction. Unlike the other family members, GC-E and GC-F have no known extracellular ligands. Instead, they are activated under low calcium conditions by guanylyl cyclase activating proteins called GCAPs. GC-D expressing neurons have been implicated in pheromone detection and GC-D is phyloge

>cd06352 PBP1_NPR_GC_like Ligand-binding domain of membrane guanylyl-cyclase receptors

Probab=93.06  E-value=0.21  Score=41.36  Aligned_cols=69  Identities=9%  Similarity=0.013  Sum_probs=45.0

Q ss_pred             eEeEEecCCC------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803          17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS   85 (141)
Q Consensus        17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~   85 (141)
                      +||.+++-..      .....|++.|++++|+... .+..+++..+..-.. |.-.+.+.+.+++    +.|++|+++|+
T Consensus         1 kvG~~~~~sG~~~~~g~~~~~a~~lAve~iN~~g~~i~g~~l~~~~~D~~~-~~~~a~~~a~~l~~~~~v~aiiG~~~s~   79 (389)
T cd06352           1 TVGVLLPWNTDYPFSLARVGPAIQLAVERVNADPNLLPGYDFTFVYLDTEC-SESVALLAAVDLYWEHNVDAFIGPGCPY   79 (389)
T ss_pred             CeEEEcCCCCCCCchhhcchHHHHHHHHHHhcCCCCCCCceEEEEEecCCC-chhhhHHHHHHHHhhcCCcEEECCCChh
Confidence            4777776422      3457899999999998753 344566666554333 4444555555555    68899998884


Q ss_pred             C
Q psy2803          86 P   86 (141)
Q Consensus        86 ~   86 (141)
                      .
T Consensus        80 ~   80 (389)
T cd06352          80 A   80 (389)
T ss_pred             H
Confidence            3

Ligand-binding domain of membrane guanylyl-cyclase receptors. Membrane guanylyl cyclases (GC) have a single membrane-spanning region and are activated by endogenous and exogenous peptides. This family can be divided into three major subfamilies: the natriuretic peptide receptors (NPRs), sensory organ-specific membrane GCs, and the enterotoxin/guanylin receptors. The binding of peptide ligands to the receptor results in the activation of the cytosolic catalytic domain. Three types of NPRs have been cloned from mammalian tissues: NPR-A/GC-A, NPR-B/ GC-B, and NPR-C. In addition, two of the GCs, GC-D and GC-G, appear to be pseudogenes in humans. Atrial natriuretic peptide (ANP) and brain natriuretic peptide (BNP) are produced in the heart, and both bind to the NPR-A. NPR-C, also termed the clearance receptor, binds each of the natriuretic peptides and can alter circulating levels of these peptides. The l

>cd06385 PBP1_NPR_A Ligand-binding domain of type A natriuretic peptide receptor

Probab=92.67  E-value=0.27  Score=41.40  Aligned_cols=39  Identities=23%  Similarity=0.185  Sum_probs=27.8

Q ss_pred             eEeEEecCC-C------hHHHHHHHHHHHHhhhcccCc-ceeEEEEE
Q psy2803          17 GLGAIFEQG-T------DEVQSAFKFAMLTHNQNTTTR-RFELQAYV   55 (141)
Q Consensus        17 ~IGaIFd~~-d------~~~ElAFk~AI~~IN~~k~l~-~f~L~p~I   55 (141)
                      +||+||+.. .      .....|++.||++||+..... ..+|...+
T Consensus         1 ~~g~l~~~~~~~~~~~~~~~~~a~~lAve~IN~~~gil~g~~l~~~~   47 (405)
T cd06385           1 TLAVILPLTNTSYPWAWPRVGPALERAIDRVNADPDLLPGLHLQYVL   47 (405)
T ss_pred             CeeEECCCCCCcCccchhhhHHHHHHHHHHHhcCCCCCCCceEEEEE
Confidence            489999732 2      456779999999999876443 45666654

Ligand-binding domain of type A natriuretic peptide receptor (NPR-A). NPR-A is one of three known single membrane-spanning natriuretic peptide receptors that regulate blood volume, blood pressure, ventricular hypertrophy, pulmonary hypertension, fat metabolism, and long bone growth. In mammals there are three natriuretic peptides: ANP, BNP, and CNP. NPR-A is highly expressed in kidney, adrenal, terminal ileum, adipose, aortic, and lung tissues. The rank order of NPR-A activation by natriuretic peptides is ANPBNPCNP. Single allele-inactivating mutations in the promoter of human NPR-A are associated with hypertension and heart failure.

>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=92.15  E-value=0.52  Score=38.34  Aligned_cols=68  Identities=13%  Similarity=0.067  Sum_probs=48.3

Q ss_pred             eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803          17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS   85 (141)
Q Consensus        17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~   85 (141)
                      +||.+.+-.      ....+.+++.|++++|..-.....+++..+.. +.+|.-.+.+.+|+++    +.+++|++.+.
T Consensus         1 ~IG~~~plsG~~a~~g~~~~~g~~~a~~~iNa~ggi~G~~v~lv~~D-~~~~p~~a~~~~~~li~~~~v~~iiG~~~s~   78 (344)
T cd06348           1 PLGVALALTGNAALYGQEQLAGLKLAEDRFNQAGGVNGRPIKLVIED-SGGDEAEAINAFQTLINKDRVLAIIGPTLSQ   78 (344)
T ss_pred             CeeEEEeccCchhhcCHhHHHHHHHHHHHHhhcCCcCCcEEEEEEec-CCCChHHHHHHHHHHhhhcCceEEECCCCcH
Confidence            367666532      24567899999999997543333355555554 5578899999999998    67888887654

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A

Probab=91.24  E-value=0.38  Score=42.67  Aligned_cols=88  Identities=16%  Similarity=0.100  Sum_probs=49.0

Q ss_pred             eeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH-----HHHhcccCCC
Q psy2803          16 IGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM-----LVTNLMSLHS   84 (141)
Q Consensus        16 I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a~~~~~~~   84 (141)
                      |+||.||....      ..+..+-.+||++||..--....+|++.+.  ++...-.+....|+.|     +.++||-+-|
T Consensus         1 ikVGiL~S~tG~~a~~e~~~~~~~~lAI~eINa~GGvlG~~le~v~~--Dp~Sd~~~ya~~A~~Li~~d~V~~ifGc~TS   78 (363)
T PF13433_consen    1 IKVGILHSLTGTMAISERSLLDGALLAIEEINAAGGVLGRQLEPVIY--DPASDPSTYAEKAEKLIREDGVRAIFGCYTS   78 (363)
T ss_dssp             --EEEE--SSSTTHHHHHHHHHHHHHHHHHHHCTTTBTTB--EEEEE----TT-HHHHHHHHHHHHHHS---EEEE--SH
T ss_pred             CeEEEEEeCCCchHhhhHHHHHHHHHHHHHHHhcCCcCCeEEEEEEE--CCCCCHHHHHHHHHHHHHhCCccEEEecchh
Confidence            68999997532      334567899999999876544458888865  5666677777777777     5789999888


Q ss_pred             CCC---cchhhhh--cCCCccccccc
Q psy2803          85 SPN---LINFMTR--LGFEPKFTESF  105 (141)
Q Consensus        85 ~~~---~~~~~~~--~~~~~~~~~~~  105 (141)
                      +|-   +|-+|.+  |=|-|+.-|-|
T Consensus        79 asRKaVlPvvE~~~~LL~Yp~~YEG~  104 (363)
T PF13433_consen   79 ASRKAVLPVVERHNALLFYPTQYEGF  104 (363)
T ss_dssp             HHHHHHHHHHHHCT-EEEE-S-----
T ss_pred             hhHHHHHHHHHhcCceEEeccccccc
Confidence            774   4555543  44788888866

>cd04509 PBP1_ABC_transporter_GCPR_C_like Family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems

Probab=90.22  E-value=0.58  Score=35.56  Aligned_cols=69  Identities=13%  Similarity=0.046  Sum_probs=44.5

Q ss_pred             eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeC--CCChhHHHHHHHHH-HHHHhcccCCCC
Q psy2803          17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVIN--TADAFKLSRLSIRK-MLVTNLMSLHSS   85 (141)
Q Consensus        17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~--~~DSFeaSkkaC~q-l~~a~~~~~~~~   85 (141)
                      +||+|++...      .....+++.|++++|........++...+....  +.+..+..+.+|+. -+.+++|+.++.
T Consensus         1 ~IG~i~p~~g~~~~~~~~~~~~~~~a~~~~n~~~g~~g~~~~~~~~d~~~~~~~~~~~~~~l~~~~~v~~iig~~~~~   78 (299)
T cd04509           1 KIGVLFPLSGPYAEYGAFRLAGAQLAVEEINAKGGIPGRKLELVIYDDQSDPARALAAARRLCQQEGVDALVGPVSSG   78 (299)
T ss_pred             CeeEEEcCCCcchhcCHHHHHHHHHHHHHHHhcCCCCCcEEEEEEecCCCCHHHHHHHHHHHhcccCceEEEcCCCcH
Confidence            4899997542      346779999999999864333345665554432  23345555666666 366788887653

This CD includes members of the family C of G-protein coupled receptors and their close homologs, the type I periplasmic-binding proteins of ATP-binding cassette transporter-like systems. The family C GPCR includes glutamate/glycine-gated ion channels such as the NMDA receptor, G-protein-coupled receptors, metabotropic glutamate, GABA-B, calcium sensing, phermone receptors, and atrial natriuretic peptide-guanylate cyclase receptors. The glutamate receptors that form cation-selective ion channels, iGluR, can be classified into three different subgroups according to their binding-affinity for the agonists NMDA (N-methyl-D-asparate), AMPA (alpha-amino-3-dihydro-5-methyl-3-oxo-4-isoxazolepropionic acid), and kainate. L-glutamate is a major neurotransmitter in the brain of vertebrates and acts th

>cd06340 PBP1_ABC_ligand_binding_like_6 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions

Probab=89.48  E-value=1.2  Score=36.63  Aligned_cols=68  Identities=10%  Similarity=0.073  Sum_probs=46.0

Q ss_pred             eEeEEecCCC------hHHHHHHHHHHHHhhhccc---CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCC
Q psy2803          17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTT---TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLH   83 (141)
Q Consensus        17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~---l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~   83 (141)
                      +||.+.+..-      .....+++.|++++|....   ....++...+.. +.+|...+.+.+|+++    +.+++|+.+
T Consensus         1 ~IG~~~p~sG~~a~~g~~~~~g~~lA~~~iN~~GGi~~i~G~~v~lv~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~   79 (347)
T cd06340           1 KIGVLLPLSGGLAAIGQQCKAGAELAVEEINAAGGIKSLGGAKLELVFGD-SQGNPDIGATEAERLITEEGVVALVGAYQ   79 (347)
T ss_pred             CceeEecCCchhhhhCHHHHHHHHHHHHHHHhcCCccCCCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEecccc
Confidence            3666665421      4467899999999998641   223355554332 2357788888999988    678889887


Q ss_pred             CC
Q psy2803          84 SS   85 (141)
Q Consensus        84 ~~   85 (141)
                      +.
T Consensus        80 s~   81 (347)
T cd06340          80 SA   81 (347)
T ss_pred             hH
Confidence            65

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.

>cd06364 PBP1_CaSR Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily

Probab=89.28  E-value=1.4  Score=39.38  Aligned_cols=28  Identities=21%  Similarity=0.113  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHhhhcccC-cceeEEEEEE
Q psy2803          29 VQSAFKFAMLTHNQNTTT-RRFELQAYVD   56 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~   56 (141)
                      ...|+.+||++||++..+ ++.+|.+++.
T Consensus        51 ~~~am~~AieeIN~~~~lLp~i~Lg~~i~   79 (510)
T cd06364          51 WLQAMIFAIEEINNSPTLLPNITLGYRIF   79 (510)
T ss_pred             HHHHHHHHHHHHhCCCccCCCCEEeEEEE
Confidence            467999999999998764 5578888876

Ligand-binding domain of the CaSR calcium-sensing receptor, which is a member of the family C receptors within the G-protein coupled receptor superfamily. CaSR provides feedback control of extracellular calcium homeostasis by responding sensitively to acute fluctuations in extracellular ionized Ca2+ concentration. This ligand-binding domain has homology to the bacterial leucine-isoleucine-valine binding protein (LIVBP) and a leucine binding protein (LBP). CaSR is widely expressed in mammalian tissues and is active in tissues that are not directly involved in extracellular calcium homeostasis. Moreover, CaSR responds to aromatic, aliphatic, and polar amino acids, but not to positively charged or branched chain amino acids, which suggests that changes in plasma amino acid levels are likely to modulate whole body calci

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=88.98  E-value=1.7  Score=34.64  Aligned_cols=68  Identities=15%  Similarity=0.108  Sum_probs=45.3

Q ss_pred             eEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCC
Q psy2803          17 GLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSS   85 (141)
Q Consensus        17 ~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~   85 (141)
                      +||.+++...      .....+++.|++++|+.......+++..+ +=+.+|.-...+.+|+++    +.|++|+..+.
T Consensus         1 ~iG~~~~~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~l~~~~-~D~~~~~~~~~~~~~~li~~~~v~aiiG~~~s~   78 (334)
T cd06347           1 KIGVNLPLTGDVAAYGQSEKNGAKLAVKEINAAGGVLGKKIELVV-EDNKSDKEEAANAATRLIDQDKVVAIIGPVTSG   78 (334)
T ss_pred             CeeEEecCCchhhhcCHhHHHHHHHHHHHHHhcCCCCCeeEEEEE-ecCCCChHHHHHHHHHHhcccCeEEEEcCCccH
Confidence            3677765422      34678999999999986433333555433 223467888888888888    56788886653

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06330 PBP1_Arsenic_SBP_like Periplasmic solute-binding domain of active transport proteins

Probab=87.03  E-value=2.7  Score=34.10  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=45.8

Q ss_pred             eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      +||.+.+..      ......+++.|++.+|........++...+.. ..+|.-.+.+.+++++    +.|++|+..+..
T Consensus         1 ~iG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~v~~~~~D-~~~~~~~a~~~a~~li~~~~v~aiig~~~s~~   79 (346)
T cd06330           1 KIGVITFLSGRAAIFGEPARNGAELAVEEINAAGGIGGRKIELVVRD-EAGKPDEAIREARELVENEGVDMLIGLISSGV   79 (346)
T ss_pred             CeeEEeecCCchhhhcHHHHHHHHHHHHHHhhcCCcCCeEEEEEEec-CCCCHHHHHHHHHHHHhccCCcEEEcccchHH
Confidence            377777542      23567899999999997653333455554432 2356677778888887    578888876543

Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea that is predicted to be involved in the efflux of toxic compounds. Members of this subgroup include proteins from Herminiimonas arsenicoxydans, which is resistant to arsenic and various heavy metals such as cadmium and zinc. Moreover, they show significant sequence similarity to the cluster of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa.

>cd06331 PBP1_AmiC_like Type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF)

Probab=87.01  E-value=2.3  Score=34.50  Aligned_cols=69  Identities=14%  Similarity=0.107  Sum_probs=43.4

Q ss_pred             eEeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          17 GLGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        17 ~IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      +||.|++..      ....+.+++.|++.+|..--....++...+..-. +|.-.+.+++++++    +.|++|++.|..
T Consensus         1 ~IG~l~p~sG~~a~~g~~~~~g~~~a~~~iN~~gGi~G~~i~l~~~D~~-~~p~~a~~~a~~Li~~~~V~aiiG~~~s~~   79 (333)
T cd06331           1 KIGLLFSLSGPAAISEPSLRNAALLAIEEINAAGGILGRPLELVVEDPA-SDPAFAAKAARRLIRDDKVDAVFGCYTSAS   79 (333)
T ss_pred             CeEEEecCCCccccccHHHHHHHHHHHHHHHhcCCCCCeEEEEEEECCC-CCHHHHHHHHHHHHhccCCcEEEecccHHH
Confidence            478777642      2456788999999999753222224444433221 35566666777776    578999877653

This group includes the type I periplasmic components of amide-binding protein (AmiC) and the active transport system for short-chain and urea (FmdDEF), found in bacteria and Archaea. AmiC controls expression of the amidase operon by a ligand-triggered conformational switch. In the absence of ligand or presence of butyramide (repressor), AmiC (the ligand sensor and negative regulator) adopts an open conformation and inhibits the transcription antitermination function of AmiR by direct protein-protein interaction. In the presence of inducing ligands such as acetamide, AmiC adopts a closed conformation which disrupts a silencing AmiC-AmiR complex and the expression of amidase and other genes of the operon is induced. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two t

>cd06374 PBP1_mGluR_groupI Ligand binding domain of the group I metabotropic glutamate receptor

Probab=86.88  E-value=1  Score=39.22  Aligned_cols=28  Identities=11%  Similarity=0.036  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHhhhcccC-cceeEEEEEE
Q psy2803          29 VQSAFKFAMLTHNQNTTT-RRFELQAYVD   56 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~   56 (141)
                      .-.|..+||++||++..+ ++.+|.++|.
T Consensus        43 ~~~Am~~Aie~IN~~~~lLp~~~Lg~~i~   71 (472)
T cd06374          43 RVEAMFHTLDRINADPVLLPNITLGCEIR   71 (472)
T ss_pred             HHHHHHHHHHHHhCCcccCCCceeccEEE
Confidence            457999999999998875 5589999887

Ligand binding domain of the group I metabotropic glutamate receptor, a family containing mGlu1R and mGlu5R, all of which stimulate phospholipase C (PLC) hydrolysis. The metabotropic glutamate receptor is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into intracellular responses. The mGluRs are classified into three groups which comprise eight subtypes.

>cd06363 PBP1_Taste_receptor Ligand-binding domain of the T1R taste receptor

Probab=86.82  E-value=0.89  Score=38.63  Aligned_cols=58  Identities=16%  Similarity=0.029  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhhcccC-cceeEEEEEEeeC-CCChhHHHHHH-----------HHHH-----HHHhcccCCCCC
Q psy2803          29 VQSAFKFAMLTHNQNTTT-RRFELQAYVDVIN-TADAFKLSRLS-----------IRKM-----LVTNLMSLHSSP   86 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~-~~DSFeaSkka-----------C~ql-----~~a~~~~~~~~~   86 (141)
                      ...|+++|+++||+.... +..++...+.... +..++...+++           |+..     +.|++||++|..
T Consensus        44 ~~~a~~lAv~~IN~~ggil~g~~l~~~~~D~~~~~~a~~~~~~li~~~~~~~~~~c~~~~~~~~V~aIiGp~~S~~  119 (410)
T cd06363          44 LFQAMRFAVEEINNSTSLLPGVTLGYEIFDHCSDSANFPPTLSLLSVNGSRIEPQCNYTNYQPRVVAVIGPDSSTL  119 (410)
T ss_pred             HHHHHHHHHHHHhCCCccCCCCeeceEEEecCCcHHHHHHHHHHHhccCcccCcccccccCCCCeEEEECCCccHH
Confidence            468999999999998653 3457777766432 22466666654           5422     678888887754

Ligand-binding domain of the T1R taste receptor. The T1R is a member of the family C receptors within the G-protein coupled receptor superfamily, which also includes the metabotropic glutamate receptors, GABAb receptors, the calcium-sensing receptor (CaSR), the V2R pheromone receptors, and a small group of uncharacterized orphan receptors.

>cd06350 PBP1_GPCR_family_C_like Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs)

Probab=86.33  E-value=2.6  Score=34.07  Aligned_cols=56  Identities=18%  Similarity=0.105  Sum_probs=38.8

Q ss_pred             HHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHHH-----------------HHhcccCCCC
Q psy2803          29 VQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKML-----------------VTNLMSLHSS   85 (141)
Q Consensus        29 ~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql~-----------------~a~~~~~~~~   85 (141)
                      ...|+.+|++++|+... ++..+|...+.. ...|.-.+.+++++++.                 .|++|+.+|.
T Consensus        29 ~~~~~~~Av~~iN~~~~~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~~~~~~~~~~~~~~v~aiiG~~~S~  102 (348)
T cd06350          29 AAEAMLFAVEEINNDPDLLPNITLGYHIYD-SCCSPAVALRAALDLLLSGEGTTPPYSCRKQPKVVAVIGPGSSS  102 (348)
T ss_pred             HHHHHHHHHHHHcCCCccCCCCceeEEEEe-cCCcchHHHHHHHHHHhcCCCCCCCCcCCCCCceEEEECCCccH
Confidence            45689999999998743 344567766554 23456788888888873                 3488887654

Ligand-binding domain of membrane-bound glutamate receptors that mediate excitatory transmission on the cellular surface through initial binding of glutamate and are categorized into ionotropic glutamate receptors (iGluRs) and metabotropic glutamate receptors (mGluRs). The metabotropic glutamate receptors (mGluR) are key receptors in the modulation of excitatory synaptic transmission in the central nervous system. The mGluRs are coupled to G proteins and are thus distinct from the iGluRs which internally contain ligand-gated ion channels. The mGluR structure is divided into three regions: the extracellular region, the seven-spanning transmembrane region and the cytoplasmic region. The extr

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=84.26  E-value=3.1  Score=35.88  Aligned_cols=31  Identities=16%  Similarity=-0.128  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHHhhhcccCcceeEEEEEEe
Q psy2803          27 DEVQSAFKFAMLTHNQNTTTRRFELQAYVDV   57 (141)
Q Consensus        27 ~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~   57 (141)
                      -+...|+.+||++||+..-++..+|...+..
T Consensus        35 ~~~~~am~~AieeIN~~~~Lpg~~L~~~i~D   65 (403)
T cd06361          35 FLQTLAMIHAIEMINNSTLLLGVTLGYEIYD   65 (403)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCEEceEEEe
Confidence            4556799999999998764455778877653

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=82.44  E-value=4.6  Score=32.92  Aligned_cols=68  Identities=9%  Similarity=-0.003  Sum_probs=43.2

Q ss_pred             EeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccCCCCC
Q psy2803          18 LGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSLHSSP   86 (141)
Q Consensus        18 IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~~~~~   86 (141)
                      ||.+.+..      ......+++.|++++|..-.....+++..+.. ...|.=.+.+.+++++    +.|++|+.++..
T Consensus         2 IG~~~~lsG~~a~~G~~~~~g~~~A~~~iN~~ggi~g~~v~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~~~s~~   79 (344)
T cd06345           2 IGVLAPLSGGASTTGEAMWNGAELAAEEINAAGGILGRKVELVFED-TEGSPEDAVRAFERLVSQDKVDAVVGGYSSEV   79 (344)
T ss_pred             eeEEEecCCcccccCHHHHHHHHHHHHHHHHcCCCCCceEEEEEec-CCCCHHHHHHHHHHHhccCCceEEECCcchHH
Confidence            66666532      24568899999999997643222234333321 2234446777888888    568999887754

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=81.87  E-value=6  Score=31.56  Aligned_cols=67  Identities=15%  Similarity=0.178  Sum_probs=39.0

Q ss_pred             EeEEecCC------ChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          18 LGAIFEQG------TDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        18 IGaIFd~~------d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      ||.+.+-.      ......+++.|++++|+.......++...+.. ...|.-.+.+.+.+++   +.|++|+.++.
T Consensus         2 iG~~~p~sG~~~~~g~~~~~g~~~a~~~iN~~ggi~g~~i~~~~~D-~~~~~~~~~~~~~~li~~~v~aiiG~~~s~   77 (334)
T cd06342           2 IGVAGPLTGPNAALGKDIKNGAQLAVEDINAKGGGKGVKLELVVED-DQADPKQAVAVAQKLVDDGVVGVVGHLNSG   77 (334)
T ss_pred             eeEeccCCCcchhhcHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCChHHHHHHHHHHHhCCceEEECCCccH
Confidence            66666532      14467899999999998743333344444422 2234444433333333   67899987775

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	141
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	2e-06
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	3e-06
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	5e-06
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus} Length = 823

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSR 68
          + I +G +F +G D+  SAF+  M+  + +     F L  ++D +  A++F ++ 
Sbjct: 1  NSIQIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTN 51

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A Length = 376

 Score = 44.4 bits (104), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSR 68
          + I +G +F +G D+  SAF+  M+  + +     F L  ++D +  A++F ++ 
Sbjct: 1  NSIQIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTN 51

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A Length = 389

 Score = 43.6 bits (102), Expect = 5e-06
 Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 2/63 (3%)

Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSI 71
          + I +G +F + T +  SAF+FA+  +N N  T  + F L  +VD ++++++F ++    
Sbjct: 4  NTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFC 63

Query: 72 RKM 74
           + 
Sbjct: 64 SQF 66

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus} Length = 384

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 12/61 (19%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRK 73
          ++I +G +F     +  +AF+FA+    +        L   +D++N +D+F+++     +
Sbjct: 9  NNIQIGGLFPNQQSQEHAAFRFALSQLTEPPK-----LLPQIDIVNISDSFEMTYRFCSQ 63

Query: 74 M 74
           
Sbjct: 64 F 64

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 38.7 bits (89), Expect = 3e-04
 Identities = 30/187 (16%), Positives = 53/187 (28%), Gaps = 64/187 (34%)

Query: 5   KEMLISLVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRF--------------- 49
           K +L    + HI              +   F  L   Q    ++F               
Sbjct: 43  KSILSKEEIDHI-----IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSP 97

Query: 50  ----------ELQAYVD----VINTADAFK---LSRLSIRKMLVTNLMSLHSSPNLINF- 91
                       + Y++    + N    F    +SRL     L   L+ L  + N++   
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 92  MTRLG-------------FEPKFTESFGVF------CPEPQSKFDLSLILRQSIIM-VDL 131
           +   G              + K    F +F      C  P    +  L + Q ++  +D 
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKM--DFKIFWLNLKNCNSP----ETVLEMLQKLLYQIDP 211

Query: 132 KLFSQSD 138
              S+SD
Sbjct: 212 NWTSRSD 218

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	141
4gpa_A	389	Glutamate receptor 4; PBP fold, ligand-gated ION c	99.27
3hsy_A	376	Glutamate receptor 2; ligand-gated ION channel, sy	98.63
3qel_B	364	Glutamate [NMDA] receptor subunit epsilon-2; ION c	98.6
3o21_A	389	Glutamate receptor 3; periplasmatic binding protei	98.57
3h6g_A	395	Glutamate receptor, ionotropic kainate 2; membrane	98.43
3saj_A	384	Glutamate receptor 1; rossman fold, ION channel, m	98.22
3kg2_A	823	Glutamate receptor 2; ION channel, membrane protei	98.17
3qek_A	384	NMDA glutamate receptor subunit; amino terminal do	98.12
3om0_A	393	Glutamate receptor, ionotropic kainate 5; membrane	97.93
3h5l_A	419	Putative branched-chain amino acid ABC transporter	96.34
4f11_A	433	Gamma-aminobutyric acid type B receptor subunit 2;	96.0
1jdp_A	441	NPR-C, atrial natriuretic peptide clearance recept	95.98
1dp4_A	435	Atrial natriuretic peptide receptor A; periplasmic	95.87
2e4u_A	555	Metabotropic glutamate receptor 3; G-protein-coupl	94.49
3sm9_A	479	Mglur3, metabotropic glutamate receptor 3; structu	94.46
3i45_A	387	Twin-arginine translocation pathway signal protei;	94.0
3n0x_A	374	Possible substrate binding protein of ABC transpo	93.97
3ks9_A	496	Mglur1, metabotropic glutamate receptor 1; glutama	93.25
4gnr_A	353	ABC transporter substrate-binding protein-branche	91.25
3mq4_A	481	Mglur7, metabotropic glutamate receptor 7; glutama	91.25
3ipc_A	356	ABC transporter, substrate binding protein (amino;	88.89
3lop_A	364	Substrate binding periplasmic protein; protein str	85.85
1usg_A	346	Leucine-specific binding protein; leucine-binding	85.35
3td9_A	366	Branched chain amino acid ABC transporter, peripl	83.59
3hut_A	358	Putative branched-chain amino acid ABC transporter	82.89
3lkb_A	392	Probable branched-chain amino acid ABC transporter	82.02
3eaf_A	391	ABC transporter, substrate binding protein; PSI2,	80.6

>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}

Probab=99.27  E-value=9.6e-12  Score=98.09  Aligned_cols=77  Identities=22%  Similarity=0.360  Sum_probs=68.4

Q ss_pred             cccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          11 LVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        11 ~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      +.|..|+|||||+.+..+.+.||++||++||++...  ++++|.+.+...+.+|++.+.+++|+++   +.|++||..|.
T Consensus         1 a~P~~I~IG~lf~~~~~~~~~a~~~Av~~iN~~~~ilg~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~   80 (389)
T 4gpa_A            1 AFPSSVQIGGLFIRNTDQEYTAFRLAIFLHNTSPNASEAPFNLVPHVDNIETANSFAVTNAFCSQYSRGVFAIFGLYDKR   80 (389)
T ss_dssp             -CCSEEEEEEEECTTCHHHHHHHHHHHHHHHTCSCTTTCSSEEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEECCCTT
T ss_pred             CCCCeEEEEEEEcCCChHHHHHHHHHHHHHHhCCCCCCCCEEEEEEEecCCCchHHHHHHHHHHHHhcCCEEEEeCCccH
Confidence            468999999999999999999999999999988653  4589999999999999999999999998   78999998876


Q ss_pred             CC
Q psy2803          86 PN   87 (141)
Q Consensus        86 ~~   87 (141)
                      .-
T Consensus        81 ~~   82 (389)
T 4gpa_A           81 SV   82 (389)
T ss_dssp             TH
T ss_pred             HH
Confidence            53

>3hsy_A Glutamate receptor 2; ligand-gated ION channel, synapse, cell CELL membrane, endoplasmic reticulum, glycoprotein, ION TRA ionic channel; HET: NAG BMA; 1.75A {Rattus norvegicus} PDB: 3h5v_A* 3h5w_A 3o2j_A* 2wjw_A* 2wjx_A 3n6v_A

Probab=98.63  E-value=6.1e-08  Score=78.25  Aligned_cols=69  Identities=20%  Similarity=0.414  Sum_probs=61.0

Q ss_pred             ceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          14 HHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        14 ~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      .+|+||+||+......+.|+++||+++|..    ..+|+..+...+.+|++++.+++|+++   +.|++|+..|..
T Consensus         1 ~~i~IG~i~~~sg~~~~~~~~lAv~~iN~~----g~~l~~~~~d~~~~d~~~a~~~~~~li~~~V~aiiG~~~S~~   72 (376)
T 3hsy_A            1 NSIQIGGLFPRGADQEYSAFRVGMVQFSTS----EFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS   72 (376)
T ss_dssp             CEEEEEEEEETTCHHHHHHHHHHHHHTCCS----SCEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred             CceeEEEEeCCCCHHHHHHHHHHHHHHhcC----CeEEEEEEeecCCCChHHHHHHHHHHHhcCcEEEECCCchhH
Confidence            368999999988888899999999999976    358888888888889999999999999   688999998764

>3qel_B Glutamate [NMDA] receptor subunit epsilon-2; ION channel, allosteric modulation, phenylethanolamine, N-glycosylation, extracellular; HET: NAG BMA MAN FUC QEL; 2.60A {Rattus norvegicus} PDB: 3qem_B* 3jpw_A* 3jpy_A*

Probab=98.60  E-value=2e-08  Score=82.45  Aligned_cols=71  Identities=14%  Similarity=0.069  Sum_probs=50.7

Q ss_pred             cceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHh-cccCCCCCC
Q psy2803          13 VHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTN-LMSLHSSPN   87 (141)
Q Consensus        13 p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~-~~~~~~~~~   87 (141)
                      +..+.||+||..++.  |.||+.|+.+.|...  ++++|++.+.+++.+|+|++.+++|+++    +.|+ +|+..+.+-
T Consensus         2 ~~~~~v~~~~~~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~dp~~~~~~~C~~l~~~~V~aiIgg~~s~~~a   77 (364)
T 3qel_B            2 PPSIGIAVILVGTSD--EVAIKDAHEKDDFHH--LSVVPRVELVAMNETDPKSIITRICDLMSDRKIQGVVFADDTDQEA   77 (364)
T ss_dssp             CCEEEEEEEEESSCC--HHHHTC-----------CCSEEEEEEEEECCCSHHHHHHHHHHHHHHSCEEEEEEEESSCCTH
T ss_pred             CCceEEEEEEcccch--hhhhccccCcccccc--CCccceEEEEEecCCCHHHHHHHHHHHHHhCCeEEEEecCCCCchH
Confidence            456889999977665  899999999999653  5589999999999999999999999999    3354 566655433

>3o21_A Glutamate receptor 3; periplasmatic binding protein, oligomerization, membrane, TR protein; HET: NAG; 2.20A {Rattus norvegicus} PDB: 3p3w_A

Probab=98.57  E-value=1.5e-07  Score=76.77  Aligned_cols=76  Identities=22%  Similarity=0.357  Sum_probs=64.9

Q ss_pred             ccceeeEeEEecCCChHHHHHHHHHHHHhhhcccC--cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          12 VVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTT--RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l--~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      .|+.|+||+||+......+.|+++||+++|+....  +..+|...+..-..+|++++.+.+|+++   +.|++|+..|..
T Consensus         2 ~~~~i~IG~i~~~sg~~~~~a~~lAv~eiN~~g~ill~g~~l~~~~~D~~~~d~~~a~~~a~~li~~~V~aiiG~~~S~~   81 (389)
T 3o21_A            2 FPNTISIGGLFMRNTVQEHSAFRFAVQLYNTNQNTTEKPFHLNYHVDHLDSSNSFSVTNAFCSQFSRGVYAIFGFYDQMS   81 (389)
T ss_dssp             CCSEEEEEEEECTTCHHHHHHHHHHHHHHHSCCCTTTCSSEEEEEEEECCTTCHHHHHHHHHHHHTTTCSCEEECCCTTT
T ss_pred             CCceeEEEEEeCCCCHHHHHHHHHHHHHHhcCccccCCCcEEEEEEEecCCCChHHHHHHHHHHHhcCcEEEEeCCChhH
Confidence            47889999999987778899999999999987654  4578988888766669999999999999   789999998765


Q ss_pred             C
Q psy2803          87 N   87 (141)
Q Consensus        87 ~   87 (141)
                      -
T Consensus        82 ~   82 (389)
T 3o21_A           82 M   82 (389)
T ss_dssp             H
T ss_pred             H
Confidence            3

>3h6g_A Glutamate receptor, ionotropic kainate 2; membrane protein glycoprotein, cell junction, cell membrane, glycoprotein, ION transport; HET: NAG TLA; 2.70A {Rattus norvegicus} PDB: 3h6h_A* 3qlv_C 3qlu_C* 3qlt_A* 3olz_A*

Probab=98.43  E-value=3e-07  Score=73.87  Aligned_cols=74  Identities=30%  Similarity=0.358  Sum_probs=61.5

Q ss_pred             cceeeEeEEecCCC----hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC
Q psy2803          13 VHHIGLGAIFEQGT----DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS   84 (141)
Q Consensus        13 p~~I~IGaIFd~~d----~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~   84 (141)
                      |..|+||+||+...    ...+.|+++||+++|+.... ++.+|...++.+...|++...+++|+++   +.|++|+..|
T Consensus         2 ~~~i~IG~l~~~sg~~~g~~~~~a~~lAv~eiN~~ggil~~~~l~~~~~~~~~~d~~~~~~~a~~l~~~~V~aiiG~~~S   81 (395)
T 3h6g_A            2 THVLRFGGIFEYVESGPMGAEELAFRFAVNTINRNRTLLPNTTLTYDTQKINLYDSFEASKKACDQLSLGVAAIFGPSHS   81 (395)
T ss_dssp             CEEEEEEEEEEESSSCSCCHHHHHHHHHHHHHHHCSSSSSSEEEEEEEEEEETTCHHHHHHHHHHHHHHCCSCEECCSSH
T ss_pred             CcceEEEEEecCCCcccchHHHHHHHHHHHHHhcCccccCCceEEEEEeecCCcChHHHHHHHHHhhhcCcEEEECCCCh
Confidence            57899999998632    35789999999999987653 4578999998888889999999999998   6788998876


Q ss_pred             CC
Q psy2803          85 SP   86 (141)
Q Consensus        85 ~~   86 (141)
                      ..
T Consensus        82 ~~   83 (395)
T 3h6g_A           82 SS   83 (395)
T ss_dssp             HH
T ss_pred             hH
Confidence            43

>3saj_A Glutamate receptor 1; rossman fold, ION channel, membrane, transport protein; HET: NAG BMA MAN; 2.50A {Rattus norvegicus}

Probab=98.22  E-value=1.3e-06  Score=70.57  Aligned_cols=70  Identities=17%  Similarity=0.359  Sum_probs=59.8

Q ss_pred             cccceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          11 LVVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        11 ~~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      ..+..|+||+||+......+.|++.||+++|...     +|+..+...+.+|++++.+++|+++   +.|++|+..|.
T Consensus         6 ~~~~~ikIG~~~~~sg~~~~~a~~lAv~~iN~~g-----~l~~~~~D~~~~d~~~a~~~~~~l~~~~V~aiiG~~~S~   78 (384)
T 3saj_A            6 AMPNNIQIGGLFPNQQSQEHAAFRFALSQLTEPP-----KLLPQIDIVNISDSFEMTYRFCSQFSKGVYAIFGFYERR   78 (384)
T ss_dssp             CCCSEEEEEEEESCSSSHHHHHHHHHHTTCCSSS-----EEEEEEEECCTTCHHHHHHHHHHHHHTTCSCEEECCCHH
T ss_pred             CCCcceeEEEEecCCCHHHHHHHHHHHHHHhcCC-----ccceeeEecccCchhhHHHHHHHHHhcCeEEEECCCCHH
Confidence            4578899999999766688999999999999763     7788877777779999999999998   67899988764

>3kg2_A Glutamate receptor 2; ION channel, membrane protein, cell membrane, glycoprotein, transport, membrane, postsynaptic cell membrane, editing; HET: ZK1 NAG BMA; 3.60A {Rattus norvegicus}

Probab=98.17  E-value=3.1e-06  Score=74.28  Aligned_cols=68  Identities=21%  Similarity=0.412  Sum_probs=60.8

Q ss_pred             eeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCCC
Q psy2803          15 HIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSSP   86 (141)
Q Consensus        15 ~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~~   86 (141)
                      +|+||+||+......+.|+++||++||++.    .+|...++....+|++.+.+++|+++   +.|++||..|..
T Consensus         2 ~ikIG~l~~~tg~~~~~a~~lAveeiN~~~----~~l~~~~~D~~~~~~~~a~~~~~~l~~~~V~aiiG~~~S~~   72 (823)
T 3kg2_A            2 SIQIGGLFPRGADQEYSAFRVGMVQFSTSE----FRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKKS   72 (823)
T ss_dssp             EEEEEEEEETTCHHHHHHHHHHHHHTCCSS----CEEEEEEEEECTTCHHHHHHHHHHHHHTTCSEEEECCCTTT
T ss_pred             cceEEEEeCCCChHHHHHHHHHHHHHhcCC----eEEEEEEEEcCCCChHHHHHHHHHHHhcCcEEEEcCCChhH
Confidence            689999999877788999999999999874    68899988888889999999999998   689999998765

>3qek_A NMDA glutamate receptor subunit; amino terminal domain, ION channel, NMDA receptor, allosteri modulation, phenylethanolamine, polyamine; HET: NAG BMA; 2.00A {Xenopus laevis} PDB: 3qel_A* 3qem_A* 3q41_A*

Probab=98.12  E-value=2.7e-06  Score=68.21  Aligned_cols=68  Identities=19%  Similarity=0.259  Sum_probs=54.9

Q ss_pred             ccceeeEeEEecCCChHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803          12 VVHHIGLGAIFEQGTDEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL   82 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~   82 (141)
                      .+++|+||+||+..  ..+.|++.||+++|........+|...+.. +..|++++.+++|++|    +.|++|++
T Consensus         2 ~~~~i~IG~i~~~s--~~~~~~~lAv~~iN~~~~~~~~~l~~~~~d-~~~d~~~a~~~~~~~Li~~~V~aiiG~~   73 (384)
T 3qek_A            2 DPKIVNIGAVLSTK--KHEQIFREAVNQANKRHFTRKIQLQATSVT-HRPNAIQMALSVCEDLISSQVYAILVSH   73 (384)
T ss_dssp             CCEEEEEEEEESSH--HHHHHHHHHHHHHHHHSCCSSEEEEEEEEE-CCSSHHHHHHHHHHHTGGGTEEEEEECC
T ss_pred             CceEEEEeEEeeCc--hHHHHHHHHHHHHhccccCCceEEEEEEec-ccCCHHHHHHHHHHHHHHcCceEEEEec
Confidence            46789999999876  678999999999998653334667666554 6789999999999975    58899953

>3om0_A Glutamate receptor, ionotropic kainate 5; membrane protein, ION channel; HET: NAG BMA GOL; 1.40A {Rattus norvegicus} PDB: 3om1_A* 3qlu_A* 3qlv_A

Probab=97.93  E-value=1.9e-05  Score=63.43  Aligned_cols=72  Identities=13%  Similarity=0.127  Sum_probs=59.2

Q ss_pred             ceeeEeEEecCCC---hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          14 HHIGLGAIFEQGT---DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        14 ~~I~IGaIFd~~d---~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      ..|+||+||+...   ...+.|+++||+++|+.... +..+|...+..-..+++..+.+++|+++   +.|++|+..|.
T Consensus         3 ~~ikIG~~~~~s~~~G~~~~~a~~lAv~eiN~~ggil~g~~l~~~~~D~~~~~~~~~~~~~~~l~~~~V~aiiG~~~S~   81 (393)
T 3om0_A            3 SSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFELQRDSQYETTDTMCQILPKGVVSVLGPSSSP   81 (393)
T ss_dssp             CEEEEEEEECCCCSSCCCHHHHHHHHHHHHHHSCCSSCCCEEEEEEEECCSSCHHHHHHHHHHHGGGCCSCEECCSSCH
T ss_pred             cceeEEEEecCCCcccHHHHHHHHHHHHHHhcCcccccCcEEEEEEEecCCCchhHHHHHHHHHHhcCcEEEECCCCch
Confidence            4699999998643   24789999999999987653 4478888888776667899999999988   78999999983

>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}

Probab=96.34  E-value=0.012  Score=47.38  Aligned_cols=75  Identities=8%  Similarity=-0.059  Sum_probs=51.0

Q ss_pred             ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803          12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS   81 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~   81 (141)
                      ....|+||.++....      ...+.+++.|++++|..-.....++...+..-...|.-.+.+.+++++    +.+++|+
T Consensus        11 ~~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~ggi~G~~i~l~~~D~~~~~~~~a~~~a~~li~~~~v~aiiG~   90 (419)
T 3h5l_A           11 SSDPVVIGCPAPLTGIVAADGIEFQRGIQMAADEINAVGGILGRPIELVFADTQSKGVDVVIQSAQRLIDRDNASALIAG   90 (419)
T ss_dssp             --CCEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHTTTSBTTBCEEEEEEECTTCCHHHHHHHHHHHHHTTCCSEEECS
T ss_pred             cCCCEEEEEeecCCCcccccCHHHHHHHHHHHHHHHhcCCcCceEEEEEEccCCCCCHHHHHHHHHHHhhhcCCeEEEcc
Confidence            456899999998643      456789999999999764322335555544322236666667777776    5789999


Q ss_pred             CCCCC
Q psy2803          82 LHSSP   86 (141)
Q Consensus        82 ~~~~~   86 (141)
                      +.|.+
T Consensus        91 ~~s~~   95 (419)
T 3h5l_A           91 YNLEN   95 (419)
T ss_dssp             CCSSC
T ss_pred             ccchh
Confidence            98875

>4f11_A Gamma-aminobutyric acid type B receptor subunit 2; venus flytrap module, G-protein coupled receptor, signaling; 2.38A {Homo sapiens} PDB: 4f12_A*

Probab=96.00  E-value=0.017  Score=46.70  Aligned_cols=72  Identities=11%  Similarity=0.051  Sum_probs=53.7

Q ss_pred             ccceeeEeEEecCCC--------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH-----HHH
Q psy2803          12 VVHHIGLGAIFEQGT--------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM-----LVT   77 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d--------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql-----~~a   77 (141)
                      ....|+||++++-..        .....|+++|++++|+. .. +..+|...+.. +..|.-.+.+.+++++     +.|
T Consensus        11 ~~~~i~IG~~~plsG~~a~~~~g~~~~~~~~lAv~~iN~~-g~l~g~~l~l~~~D-~~~~~~~a~~~a~~li~~~~~v~a   88 (433)
T 4f11_A           11 SSPPLSIMGLMPLTKEVAKGSIGRGVLPAVELAIEQIRNE-SLLRPYFLDLRLYD-TECDNAKGLKAFYDAIKYGPNHLM   88 (433)
T ss_dssp             CCCEEEEEEEECCCTTSTTHHHHHHHHHHHHHHHHHHHHT-TTTTTCEEEEEEEE-CTTCHHHHHHHHHHHHHHSCCCSE
T ss_pred             CCCceEEEEEEEecCCCCCCccchhHHHHHHHHHHHHhcc-CCCCCCEEEEEEec-CCCCHHHHHHHHHHHHhcCCceEE
Confidence            456899999998533        24678999999999987 43 34577766553 3367889999999988     356


Q ss_pred             hcccCCCC
Q psy2803          78 NLMSLHSS   85 (141)
Q Consensus        78 ~~~~~~~~   85 (141)
                      ++|+.+|.
T Consensus        89 viG~~~S~   96 (433)
T 4f11_A           89 VFGGVCPS   96 (433)
T ss_dssp             EEECCSHH
T ss_pred             EECCCcch
Confidence            88887764

>1jdp_A NPR-C, atrial natriuretic peptide clearance receptor; hormone-receptor complex, natriuretic peptide receptor, ALLO activation, signaling protein; HET: NDG NAG; 2.00A {Homo sapiens} SCOP: c.93.1.1 PDB: 1jdn_A* 1yk0_A* 1yk1_A*

Probab=95.98  E-value=0.0096  Score=48.39  Aligned_cols=74  Identities=15%  Similarity=0.113  Sum_probs=47.4

Q ss_pred             cceeeEeEEecCCC------hHHHHHHHHHHHHhhhccc-----CcceeEEEEEEeeCCCCh--hHHHHHHHHH---HHH
Q psy2803          13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-----TRRFELQAYVDVINTADA--FKLSRLSIRK---MLV   76 (141)
Q Consensus        13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-----l~~f~L~p~I~~V~~~DS--FeaSkkaC~q---l~~   76 (141)
                      ...|+||++++...      .....|+++||++||++..     ++..+|...+..-.-+..  ..+.+..|..   =+.
T Consensus         7 ~~~i~IG~~~p~sg~~~~~g~~~~~a~~~Av~eiN~~~~~~~~ll~g~~l~~~~~D~~~~~~a~~~~~~~~~~~~~~~v~   86 (441)
T 1jdp_A            7 PQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDSDCGNRALFSLVDRVAAARGAKPD   86 (441)
T ss_dssp             CCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEECTTSTHHHHHHHHHHHHTTTCCCS
T ss_pred             CCceEEEEEcCCCCCcccchhhhHHHHHHHHHHHHhCCCcccccCCCcEEEEEEecCCCchhHHHHHHHHHHhhccCCce
Confidence            46799999998633      2467899999999998754     345677777654322222  2234556753   257


Q ss_pred             HhcccCCCCC
Q psy2803          77 TNLMSLHSSP   86 (141)
Q Consensus        77 a~~~~~~~~~   86 (141)
                      |++|+.+|..
T Consensus        87 aiiG~~~S~~   96 (441)
T 1jdp_A           87 LILGPVCEYA   96 (441)
T ss_dssp             EEECCCSHHH
T ss_pred             EEECCCchhh
Confidence            7888887654

>1dp4_A Atrial natriuretic peptide receptor A; periplasmic binding protein fold, dimer, hormone/growth FACT receptor, lyase complex; HET: NAG; 2.00A {Rattus norvegicus} SCOP: c.93.1.1 PDB: 1t34_A* 3a3k_A*

Probab=95.87  E-value=0.02  Score=45.98  Aligned_cols=72  Identities=4%  Similarity=-0.038  Sum_probs=48.9

Q ss_pred             eeeEeEEecCCC------hHHHH-HHHHHHHHhhhcccC-cceeEEEEEEeeCC----CChhHHHHHHHHHH----HHHh
Q psy2803          15 HIGLGAIFEQGT------DEVQS-AFKFAMLTHNQNTTT-RRFELQAYVDVINT----ADAFKLSRLSIRKM----LVTN   78 (141)
Q Consensus        15 ~I~IGaIFd~~d------~~~El-AFk~AI~~IN~~k~l-~~f~L~p~I~~V~~----~DSFeaSkkaC~ql----~~a~   78 (141)
                      .|+||++|.-..      ..... |+++||+++|+.... +..+|...+..-..    .++-.+...+++++    +.|+
T Consensus         2 ~i~IG~l~p~sg~~~~~g~~~~~~a~~~Av~~iN~~ggil~g~~l~~~~~D~~~~p~~c~~~~a~~~a~~~l~~~~v~av   81 (435)
T 1dp4_A            2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF   81 (435)
T ss_dssp             EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred             ceEEEEEccCcCCCCceeHHHHHHHHHHHHHHHHhCCCCCCCceEEEEEecCcCcccccchhhHHHHHHHHHHhcCceEE
Confidence            589999998531      13344 999999999987654 35677777664311    12346667777777    5678


Q ss_pred             cccCCCCC
Q psy2803          79 LMSLHSSP   86 (141)
Q Consensus        79 ~~~~~~~~   86 (141)
                      +|+.+|..
T Consensus        82 iG~~~S~~   89 (435)
T 1dp4_A           82 LGPGCVYS   89 (435)
T ss_dssp             ECCCSHHH
T ss_pred             ECCCChHH
Confidence            88876644

>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*

Probab=94.49  E-value=0.042  Score=46.84  Aligned_cols=62  Identities=15%  Similarity=0.089  Sum_probs=42.7

Q ss_pred             ccceeeEeEEecCCC----------------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH
Q psy2803          12 VVHHIGLGAIFEQGT----------------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM   74 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d----------------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql   74 (141)
                      ....|+||++|.-..                .....|+++||++||++..+ ++.+|...+..- -+|.-.+.+.+.+++
T Consensus        11 ~~g~i~IG~l~pl~g~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~llpg~~L~~~i~D~-~~~~~~a~~~a~~~l   89 (555)
T 2e4u_A           11 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDNYLLPGVKLGVHILDT-CSRDTYALEQSLEFV   89 (555)
T ss_dssp             ECCSEEEEEEECCEEECCTTCSEEEECTTTTHHHHHHHHHHHHHHHHCTTSSTTCCEEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEEEeeECCCCCCccccccchhhhHHHHHHHHHHHHHhCCCCCCCCCeEEEEEEEC-CCChHHHHHHHHHHH
Confidence            345799999997421                13467999999999998754 467888887642 345556666655554

>3sm9_A Mglur3, metabotropic glutamate receptor 3; structural genomics, structural genomics consortium, SGC, CE membrane, G-protein coupled receptor; HET: Z99; 2.26A {Homo sapiens}

Probab=94.46  E-value=0.073  Score=44.91  Aligned_cols=62  Identities=15%  Similarity=0.073  Sum_probs=41.0

Q ss_pred             ccceeeEeEEecC----------------CChHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCCCChhHHHHHHHHHH
Q psy2803          12 VVHHIGLGAIFEQ----------------GTDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINTADAFKLSRLSIRKM   74 (141)
Q Consensus        12 ~p~~I~IGaIFd~----------------~d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~~DSFeaSkkaC~ql   74 (141)
                      .+.-|.|||+|.-                ..-+...|+++||++||++..+ ++.+|.+.+..- -.|.-.+.+.+-+++
T Consensus        10 ~~GDi~iGglf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpg~~L~~~i~D~-~~~~~~a~~~~~~ll   88 (479)
T 3sm9_A           10 IEGDLVLGGLFPINEKGTGTEECGRINEDRGIQRLEAMLFAIDEINKDDYLLPGVKLGVHILDT-CSRDTYALEQSLEFV   88 (479)
T ss_dssp             ECCSEEEEEEECCEEECC-CCSEEEECTTTTHHHHHHHHHHHHHHHHCSSSSTTCCEEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred             cCCCEEEEEEEEeEECCCCCCCCcccchhhhHHHHHHHHHHHHHHhCCCccCCCCeEeEEEEec-CCChHHHHHHHHHHH
Confidence            3445789999964                1234567999999999998764 468888887652 234444444444443

>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}

Probab=94.00  E-value=0.13  Score=40.60  Aligned_cols=73  Identities=12%  Similarity=0.033  Sum_probs=48.7

Q ss_pred             cceeeEeEEecCCC-----hHHHHHHHHHHHHhhhcccCcc-eeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803          13 VHHIGLGAIFEQGT-----DEVQSAFKFAMLTHNQNTTTRR-FELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL   82 (141)
Q Consensus        13 p~~I~IGaIFd~~d-----~~~ElAFk~AI~~IN~~k~l~~-f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~   82 (141)
                      ...|+||.++....     .....+++.|++++|+...... .++...+.. +.+|.-.+.+.+++++    +.|++|+.
T Consensus         3 ~~~i~IG~~~p~sg~~~~g~~~~~g~~~a~~~iN~~ggi~Gg~~i~l~~~D-~~~~~~~~~~~~~~li~~~~v~aiiG~~   81 (387)
T 3i45_A            3 LEAIRIGEINSYSQIPAFTLPYRNGWQLAVEQINAAGGLLGGRPLEVISRD-DGGDPGKAVTAAQELLTRHGVHALAGTF   81 (387)
T ss_dssp             CCCEEEEEEECTTTCHHHHHHHHHHHHHHHHHHHHTTCBTTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHHCCSEEEECC
T ss_pred             CCCEEEEEeecCCCchhhhHHHHHHHHHHHHHHHhcCCCCCCcceEEEEec-CCCCHHHHHHHHHHHHHhcCCEEEECCc
Confidence            35799999998533     2367899999999998753222 244444332 3356777777777776    45788887


Q ss_pred             CCCC
Q psy2803          83 HSSP   86 (141)
Q Consensus        83 ~~~~   86 (141)
                      .+..
T Consensus        82 ~s~~   85 (387)
T 3i45_A           82 LSHV   85 (387)
T ss_dssp             SHHH
T ss_pred             chHH
Confidence            6543

>3n0x_A Possible substrate binding protein of ABC transpo system; receptor family ligand binding region, structural genomics; HET: MSE; 1.50A {Rhodopseudomonas palustris} PDB: 3nnd_B

Probab=93.97  E-value=0.095  Score=41.51  Aligned_cols=73  Identities=4%  Similarity=0.020  Sum_probs=49.2

Q ss_pred             cceeeEeEEecCCC------hHHHHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhccc
Q psy2803          13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMS   81 (141)
Q Consensus        13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~   81 (141)
                      .+.|+||.++.-..      .....+++.|++++|.... ....++...+.. +.+|.-.+.+.+++++    +.|++|+
T Consensus         2 ~~~i~IG~~~plsG~~a~~g~~~~~g~~lA~~~iN~~~ggi~G~~i~l~~~D-~~~~~~~a~~~~~~li~~~~v~aiiG~   80 (374)
T 3n0x_A            2 ADDLKIALIYGKTGPLEAYAKQTETGLMMGLEYATKGTMTLDGRKIVVITKD-DQSKPDLSKAALAEAYQDDGADIAIGT   80 (374)
T ss_dssp             --CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHTTTCCEETTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEEC
T ss_pred             CCCEEEEEecCCCCchhhhCHHHHHHHHHHHHHHhccCCCcCCEEEEEEEec-CCCCHHHHHHHHHHHHHhCCceEEEcC
Confidence            35799999998642      3567899999999997421 222344444332 4467788888888887    5678888


Q ss_pred             CCCCC
Q psy2803          82 LHSSP   86 (141)
Q Consensus        82 ~~~~~   86 (141)
                      +.|..
T Consensus        81 ~~s~~   85 (374)
T 3n0x_A           81 SSSAA   85 (374)
T ss_dssp             SSHHH
T ss_pred             CCcHH
Confidence            87653

>3ks9_A Mglur1, metabotropic glutamate receptor 1; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99 NAG; 1.90A {Homo sapiens} SCOP: c.93.1.1 PDB: 1ewk_A* 1ewt_A* 1ewv_A 1isr_A* 1iss_A* 3lmk_A*

Probab=93.25  E-value=0.14  Score=43.31  Aligned_cols=51  Identities=12%  Similarity=0.081  Sum_probs=36.4

Q ss_pred             hhhcccceeeEeEEecCC------------------C--hHHHHHHHHHHHHhhhcccC-cceeEEEEEEee
Q psy2803           8 LISLVVHHIGLGAIFEQG------------------T--DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVI   58 (141)
Q Consensus         8 ~~~~~p~~I~IGaIFd~~------------------d--~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V   58 (141)
                      .....+.-|-|||+|.-.                  .  -+...|+.+||++||++..+ ++.+|.+.+..-
T Consensus        10 ~~~~~~GDi~iGglf~vh~~~~~~~~~~~~c~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~tLg~~i~D~   81 (496)
T 3ks9_A           10 SVARMDGDVIIGALFSVHHQPPAEKVPERKCGEIREQYGIQRVEAMFHTLDKINADPVLLPNITLGSEIRDS   81 (496)
T ss_dssp             CCEEECCSEEEEEEECSBCCCCGGGTTTTCCCCBCTTTTHHHHHHHHHHHHHHHTCSSSSTTCCEEEEEEEC
T ss_pred             cceecCCCEEEEEEEEeEEcCccCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCCCCCceEeEEEEEc
Confidence            334445567899999521                  1  23467999999999998764 568999998753

>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}

Probab=91.25  E-value=0.67  Score=35.98  Aligned_cols=74  Identities=12%  Similarity=0.100  Sum_probs=42.7

Q ss_pred             cccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803          11 LVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM   80 (141)
Q Consensus        11 ~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~   80 (141)
                      ...++|+||.+++-.-      .....+.+.|++++|..-....-+++..+.. +..|.=.+.+.+-+++    +.+++|
T Consensus         3 ~~~~tIkIG~~~plsG~~a~~G~~~~~g~~lAv~~iN~~GGi~Gr~ielv~~D-~~~~p~~a~~~a~~li~~~~v~~i~g   81 (353)
T 4gnr_A            3 VEEKTIKIGFNFEESGSLAAYGTAEQKGAQLAVDEINAAGGIDGKQIEVVDKD-NKSETAEAASVTTNLVTQSKVSAVVG   81 (353)
T ss_dssp             ---CEEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEC
T ss_pred             CCCCeEEEEEEeCCcCchhHhHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCCHHHHHHHHHHHHhhCCceEEec
Confidence            4457899999998532      3467799999999998643222244443331 2234444444444444    355667


Q ss_pred             cCCCC
Q psy2803          81 SLHSS   85 (141)
Q Consensus        81 ~~~~~   85 (141)
                      +++|.
T Consensus        82 ~~~s~   86 (353)
T 4gnr_A           82 PATSG   86 (353)
T ss_dssp             CCSHH
T ss_pred             cccCc
Confidence            66554

>3mq4_A Mglur7, metabotropic glutamate receptor 7; glutamate receptors, dimerization, glutamic acid BIN structural genomics, structural genomics consortium; HET: Z99; 2.80A {Homo sapiens} SCOP: c.93.1.0 PDB: 2e4z_A*

Probab=91.25  E-value=0.45  Score=39.81  Aligned_cols=45  Identities=18%  Similarity=0.146  Sum_probs=33.7

Q ss_pred             cceeeEeEEecCC----------------ChHHHHHHHHHHHHhhhcccC-cceeEEEEEEe
Q psy2803          13 VHHIGLGAIFEQG----------------TDEVQSAFKFAMLTHNQNTTT-RRFELQAYVDV   57 (141)
Q Consensus        13 p~~I~IGaIFd~~----------------d~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~   57 (141)
                      ...|.|||+|.-.                .-+...|+.+||++||++..+ ++.+|.+.+..
T Consensus        14 ~gdi~IG~lf~l~~~~~~~~~C~~~~~~~g~~~~~a~~~AieeIN~~~~lLpn~~L~~~i~D   75 (481)
T 3mq4_A           14 EGDVTLGGLFPVHAKGPSGVPCGDIKRENGIHRLEAMLYALDQINSDPNLLPNVTLGARILD   75 (481)
T ss_dssp             CCSEEEEEEECSBCCC-----CCSBCTTTTHHHHHHHHHHHHHHTTCSSSSSSCCEEEEEEE
T ss_pred             CCCEEEEEEEEceeCCCCCCCCccccchhhHHHHHHHHHHHHHHhCCCCcCCCceEEEEEEe
Confidence            3468999999631                124567999999999998764 46788888764

>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A

Probab=88.89  E-value=1  Score=34.71  Aligned_cols=70  Identities=7%  Similarity=-0.042  Sum_probs=45.3

Q ss_pred             eeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          15 HIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        15 ~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      +|+||.++....      .....+++.|++++|........++...+.. ..+|.-...+.+++++   +.+++|+..+.
T Consensus         2 ~i~IG~~~p~sg~~~~~g~~~~~g~~~a~~~iN~~ggi~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s~   80 (356)
T 3ipc_A            2 DVVIAVGAPLTGPNAAFGAQIQKGAEQAAKDINAAGGINGEQIKIVLGD-DVSDPKQGISVANKFVADGVKFVVGHANSG   80 (356)
T ss_dssp             CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHHHHTTCBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEEECSSHH
T ss_pred             eEEEEEeeCCCCcchhhCHHHHHHHHHHHHHHHhcCCCCCeEEEEEEec-CCCCHHHHHHHHHHHHHCCCcEEEcCCCcH
Confidence            589999998532      3467799999999998643222344443332 2345666666677776   56688876653

>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}

Probab=85.85  E-value=1.8  Score=33.68  Aligned_cols=72  Identities=8%  Similarity=-0.040  Sum_probs=43.0

Q ss_pred             cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803          13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL   82 (141)
Q Consensus        13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~   82 (141)
                      ...|+||.++....      .....+++.|++++|..-.....++...+.. +.+|.=.+.+.+.+++    +.+++|++
T Consensus         3 ~~~i~IG~~~p~sG~~~~~g~~~~~g~~~a~~~~N~~ggi~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iig~~   81 (364)
T 3lop_A            3 LADISVIQSLPLSGSQAVTGRALNAGARLYFDWLNLNGGINGETIRLVARD-DEQKIEQTVRNVRDMARVDNPVALLTVV   81 (364)
T ss_dssp             --CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHHSCEEEEECCC
T ss_pred             CCeEEEEEEecCCCcchhccHHHHHHHHHHHHHHHhcCCcCCeEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEEEecC
Confidence            35799999998632      2457789999999997643222234433322 2234444555555555    35688876


Q ss_pred             CCC
Q psy2803          83 HSS   85 (141)
Q Consensus        83 ~~~   85 (141)
                      .+.
T Consensus        82 ~s~   84 (364)
T 3lop_A           82 GTA   84 (364)
T ss_dssp             CHH
T ss_pred             CCH
Confidence            654

>1usg_A Leucine-specific binding protein; leucine-binding protein, X-RAY crystallography, protein structure, ABC transport systems, transport protein; 1.53A {Escherichia coli} SCOP: c.93.1.1 PDB: 1usi_A* 1usk_A 2lbp_A 1z15_A 1z16_A 1z17_A 1z18_A 2liv_A

Probab=85.35  E-value=2.2  Score=32.47  Aligned_cols=70  Identities=13%  Similarity=0.019  Sum_probs=42.8

Q ss_pred             eeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCCC
Q psy2803          15 HIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHSS   85 (141)
Q Consensus        15 ~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~~   85 (141)
                      .|+||.++....      .....+++.|++++|+.......++...+.. ..+|.-...+.+.+++   +.+++|+..+.
T Consensus         2 ~i~IG~~~p~~g~~~~~~~~~~~g~~~a~~~iN~~ggi~G~~l~l~~~d-~~~~~~~~~~~~~~l~~~~v~~iig~~~s~   80 (346)
T 1usg_A            2 DIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD-DACDPKQAVAVANKIVNDGIKYVIGHLCSS   80 (346)
T ss_dssp             CEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEECCSSHH
T ss_pred             cEEEEEEeCCCCcchhcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEeC-CCCCHHHHHHHHHHHHhCCCCEEEcCCCcH
Confidence            588999998643      2456789999999998643333344433322 2245444555555554   46678876543

>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}

Probab=83.59  E-value=2.3  Score=32.98  Aligned_cols=71  Identities=8%  Similarity=0.054  Sum_probs=44.0

Q ss_pred             cccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803          11 LVVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM   80 (141)
Q Consensus        11 ~~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~   80 (141)
                      +.+.+++||.+..-..      .....+++.|++++|. .  ...++...+.. ..+|.-.+.+.+++++    +.+++|
T Consensus        12 ~~~~~~~iG~~~plsG~~a~~g~~~~~g~~~a~~~in~-i--~G~~i~l~~~D-~~~~~~~~~~~~~~l~~~~~v~~iiG   87 (366)
T 3td9_A           12 HMRKVVKIAVILPMTGGISAFGRMVWEGIQIAHEEKPT-V--LGEEVELVLLD-TRSEKTEAANAAARAIDKEKVLAIIG   87 (366)
T ss_dssp             ----CEEEEEEECCSSTTHHHHHHHHHHHHHHHHHCCE-E--TTEEEEEEEEE-CTTCHHHHHHHHHHHHHTSCCSEEEE
T ss_pred             hhcceEEEEEEECCcCcchhcCHHHHHHHHHHHHHhhh-c--CCeEEEEEEec-CCCCHHHHHHHHHHHhccCCeEEEEc
Confidence            3456789999998533      3467799999999997 1  12244443332 2356666666677766    567888


Q ss_pred             cCCCC
Q psy2803          81 SLHSS   85 (141)
Q Consensus        81 ~~~~~   85 (141)
                      +..+.
T Consensus        88 ~~~s~   92 (366)
T 3td9_A           88 EVASA   92 (366)
T ss_dssp             CSSHH
T ss_pred             cCCch
Confidence            77654

>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}

Probab=82.89  E-value=2.7  Score=32.41  Aligned_cols=72  Identities=14%  Similarity=0.028  Sum_probs=44.2

Q ss_pred             cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcccC
Q psy2803          13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLMSL   82 (141)
Q Consensus        13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~~~   82 (141)
                      ...|+||.|+....      .....+++.|++++|........++...+.. ..+|.-...+.+.+++    +.+++|+.
T Consensus         2 ~~~i~IG~i~p~sg~~~~~~~~~~~g~~~a~~~~n~~ggi~G~~~~l~~~d-~~~~~~~~~~~~~~l~~~~~v~~iig~~   80 (358)
T 3hut_A            2 SLALLLGYELPLTGANAAYGRVFQEAARLQLDRFNAAGGVGGRPVDILYAD-SRDDADQARTIARAFVDDPRVVGVLGDF   80 (358)
T ss_dssp             -CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHCTTEEEEEECS
T ss_pred             CccEEEEEEeccCCchhhcCHHHHHHHHHHHHHHHhhCCCCCeEEEEEEec-CCCCHHHHHHHHHHHhccCCcEEEEcCC
Confidence            35789999998632      3567899999999997643222233333322 2245555555566665    45678876


Q ss_pred             CCC
Q psy2803          83 HSS   85 (141)
Q Consensus        83 ~~~   85 (141)
                      .+.
T Consensus        81 ~s~   83 (358)
T 3hut_A           81 SST   83 (358)
T ss_dssp             SHH
T ss_pred             CcH
Confidence            653

>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}

Probab=82.02  E-value=9.2  Score=29.90  Aligned_cols=68  Identities=9%  Similarity=-0.108  Sum_probs=43.4

Q ss_pred             ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH----HHHhcc
Q psy2803          12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM----LVTNLM   80 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~~~   80 (141)
                      ..+.|+||.++....      .....+++.|++++|........++...+.. +.+|.-...+.+++++    +.+++|
T Consensus         4 a~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~G~~i~l~~~D-~~~~~~~~~~~~~~li~~~~V~~iig   81 (392)
T 3lkb_A            4 GQQQVTLFWSGAITGPTSDAGAPYGAAVEDYCKWANERKLVPGVVFNCVVRD-DQYNNANTQRFFEEAVDRFKIPVFLS   81 (392)
T ss_dssp             CCEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHTSSTTEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSCEEE
T ss_pred             cCCceEEEEEecccCchhhcChhHHHHHHHHHHHHHhcCCcCCeEeEEEEec-CCCCHHHHHHHHHHHHhhcCcEEEEe
Confidence            356899999998532      2467899999999998643323344444332 2345555556666665    456777

>3eaf_A ABC transporter, substrate binding protein; PSI2, NYSGXRC, substrate binding P structural genomics, protein structure initiative; 2.00A {Aeropyrum pernix}

Probab=80.60  E-value=3.5  Score=32.49  Aligned_cols=67  Identities=6%  Similarity=0.000  Sum_probs=40.7

Q ss_pred             cceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccC--cce--eEEEEEEeeCCCChhHHHHHHHHHH----HHHh
Q psy2803          13 VHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTT--RRF--ELQAYVDVINTADAFKLSRLSIRKM----LVTN   78 (141)
Q Consensus        13 p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l--~~f--~L~p~I~~V~~~DSFeaSkkaC~ql----~~a~   78 (141)
                      ...|+||.+++...      .....+++.|++++|..-..  ...  ++...+.. +.+|.=.+.+.+.+++    +.++
T Consensus         2 ~~~i~IG~~~p~sG~~a~~g~~~~~g~~~a~~~iN~~ggi~~~G~~~~l~l~~~D-~~~~~~~a~~~~~~li~~~~V~~i   80 (391)
T 3eaf_A            2 SLTINVGLLVDETGPTSDVGKGYSLGAELAFKYFNEKGIYTKDGVRVNINYIKRD-YAYNPTTAEEYYREFRDRYGVIAI   80 (391)
T ss_dssp             CEEEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHHCEECTTCCEEEEEEEEEE-CTTCHHHHHHHHHHHHHTTCCSEE
T ss_pred             CccEEEEEEEcCCCchhhhhHHHHHHHHHHHHHHHHcCCCccCCeEEEEEEEEeC-CCCCHHHHHHHHHHHHhhcCcEEE
Confidence            35799999998532      34677999999999986422  222  44444332 2234444444455554    4678


Q ss_pred             cc
Q psy2803          79 LM   80 (141)
Q Consensus        79 ~~   80 (141)
                      +|
T Consensus        81 iG   82 (391)
T 3eaf_A           81 IG   82 (391)
T ss_dssp             EE
T ss_pred             EE
Confidence            88

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	141
d1ewka_	477	Metabotropic glutamate receptor subtype 1 {Rat (Ra	97.15
d1dp4a_	425	Hormone binding domain of the atrial natriuretic p	96.74
d1jdpa_	401	Hormone binding domain of the atrial natriuretic p	95.37
d1usga_	346	Leucine-binding protein {Escherichia coli [TaxId:	90.15

>d1ewka_ c.93.1.1 (A:) Metabotropic glutamate receptor subtype 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Metabotropic glutamate receptor subtype 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.15  E-value=0.00032  Score=56.43  Aligned_cols=44  Identities=11%  Similarity=-0.034  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhhhccc-CcceeEEEEEEeeCCCChhHHHHHHHHHH
Q psy2803          30 QSAFKFAMLTHNQNTT-TRRFELQAYVDVINTADAFKLSRLSIRKM   74 (141)
Q Consensus        30 ElAFk~AI~~IN~~k~-l~~f~L~p~I~~V~~~DSFeaSkkaC~ql   74 (141)
                      -.|+.|||++||++.. +|+++|-++|..- -+++..+-+.+.+++
T Consensus        44 ~~Am~~Aie~IN~~~~lLPn~tLg~~i~Dt-c~~~~~a~~~~~~~i   88 (477)
T d1ewka_          44 VEAMFHTLDKINADPVLLPNITLGSEIRDS-CWHSSVALEQSIEFI   88 (477)
T ss_dssp             HHHHHHHHHHHHHCSSSSTTCCEEEEEEEC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCcCCCCEEEEEEEEc-CCChHHHHHHHHHHH
Confidence            4599999999999887 4569999988642 245555555555543

>d1dp4a_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.74  E-value=0.0018  Score=48.95  Aligned_cols=72  Identities=7%  Similarity=0.037  Sum_probs=51.3

Q ss_pred             eeeEeEEec-CCC------hHHHHHHHHHHHHhhhcccC-cceeEEEEEEeeCC----CChhHHHHHHHHHH----HHHh
Q psy2803          15 HIGLGAIFE-QGT------DEVQSAFKFAMLTHNQNTTT-RRFELQAYVDVINT----ADAFKLSRLSIRKM----LVTN   78 (141)
Q Consensus        15 ~I~IGaIFd-~~d------~~~ElAFk~AI~~IN~~k~l-~~f~L~p~I~~V~~----~DSFeaSkkaC~ql----~~a~   78 (141)
                      .|+||++|. .+.      .....|+++||++||+.... +..+|...+..-..    .|...+...+++++    +.|+
T Consensus         2 ~i~vg~~lPltg~~~~~~~~~~~~A~~lAv~~IN~~~~~l~g~~l~~~~~D~~~~~~~~~~~~~~~~a~~~~~~~~V~ai   81 (425)
T d1dp4a_           2 DLTVAVVLPLTNTSYPWSWARVGPAVELALARVKARPDLLPGWTVRMVLGSSENAAGVCSDTAAPLAAVDLKWEHSPAVF   81 (425)
T ss_dssp             EEEEEEEECSSCCCSTTCHHHHHHHHHHHHHHHHTCTTSSTTCEEEEEEEECBCTTSSBCTTHHHHHHHHHHHHHCCSEE
T ss_pred             cEEEEEEECCCCcccccchhhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEECCCcccccCHHHHHHHHHHHHhcCCCeEE
Confidence            689999996 332      34577999999999998764 45778777654321    25667777777776    5788


Q ss_pred             cccCCCCC
Q psy2803          79 LMSLHSSP   86 (141)
Q Consensus        79 ~~~~~~~~   86 (141)
                      +|+.+|..
T Consensus        82 iG~~~S~~   89 (425)
T d1dp4a_          82 LGPGCVYS   89 (425)
T ss_dssp             ECCCSHHH
T ss_pred             ECCCChHH
Confidence            99887744

>d1jdpa_ c.93.1.1 (A:) Hormone binding domain of the atrial natriuretic peptide receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Hormone binding domain of the atrial natriuretic peptide receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.37  E-value=0.0047  Score=45.89  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=44.7

Q ss_pred             ccceeeEeEEecCCC------hHHHHHHHHHHHHhhhcccC-----cceeEEEEEEeeCCCCh---hHHHHHHHHHH---
Q psy2803          12 VVHHIGLGAIFEQGT------DEVQSAFKFAMLTHNQNTTT-----RRFELQAYVDVINTADA---FKLSRLSIRKM---   74 (141)
Q Consensus        12 ~p~~I~IGaIFd~~d------~~~ElAFk~AI~~IN~~k~l-----~~f~L~p~I~~V~~~DS---FeaSkkaC~ql---   74 (141)
                      -|++|+||+|+..+.      ..+..|+++||+.+|++...     ...+++..+..- ..|+   ..+.+++|.+.   
T Consensus         4 ~~~~i~igvllP~tg~~~~~~~~~~~a~~lAv~~iN~~g~~~~~~~~g~~i~~~~~D~-~~~~~~~~~~~~~l~~~~~~~   82 (401)
T d1jdpa_           4 PPQKIEVLVLLPQDDSYLFSLTRVRPAIEYALRSVEGNGTGRRLLPPGTRFQVAYEDS-DCGNRALFSLVDRVAAARGAK   82 (401)
T ss_dssp             CCCEEEEEEEECSSTTSTTCHHHHHHHHHHHHHHHCC-----CCSCTTCEEEEEEEEC-TTSTHHHHHHHHHHHHTTTCC
T ss_pred             CCCccEEEEEECCCCchhhhhHHHHHHHHHHHHHHHhcCCccccCCCCcEEEEEEEeC-CCCHHHHHHHHHHHHHhccCC
Confidence            367999999998643      34677999999999986421     234555544432 1233   44444444432   


Q ss_pred             HHHhcccCCCCC
Q psy2803          75 LVTNLMSLHSSP   86 (141)
Q Consensus        75 ~~a~~~~~~~~~   86 (141)
                      +.|++||.+|..
T Consensus        83 v~~iiG~~~s~~   94 (401)
T d1jdpa_          83 PDLILGPVCEYA   94 (401)
T ss_dssp             CSEEECCCSHHH
T ss_pred             cEEEECCCCcch
Confidence            457888877654

>d1usga_ c.93.1.1 (A:) Leucine-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Leucine-binding protein
species: Escherichia coli [TaxId: 562]

Probab=90.15  E-value=0.38  Score=34.99  Aligned_cols=70  Identities=11%  Similarity=0.016  Sum_probs=44.1

Q ss_pred             ceeeEeEEecCC-C-----hHHHHHHHHHHHHhhhcccCcceeEEEEEEeeCCCChhHHHHHHHHHH---HHHhcccCCC
Q psy2803          14 HHIGLGAIFEQG-T-----DEVQSAFKFAMLTHNQNTTTRRFELQAYVDVINTADAFKLSRLSIRKM---LVTNLMSLHS   84 (141)
Q Consensus        14 ~~I~IGaIFd~~-d-----~~~ElAFk~AI~~IN~~k~l~~f~L~p~I~~V~~~DSFeaSkkaC~ql---~~a~~~~~~~   84 (141)
                      +.|+||.|.+-. .     .....+.+.|++.+|..-....-+++..+.. +..|.=.+.+++.+++   ..+++|+.++
T Consensus         1 d~I~IG~~~plsG~~a~~G~~~~~g~~lav~~iN~~ggi~G~~i~lv~~D-~~~~p~~a~~~~~~li~~~~~~vig~~~s   79 (346)
T d1usga_           1 DDIKVAVVGAMSGPIAQWGDMEFNGARQAIKDINAKGGIKGDKLVGVEYD-DACDPKQAVAVANKIVNDGIKYVIGHLCS   79 (346)
T ss_dssp             CCEEEEEEECSSSTTHHHHHHHHHHHHHHHHHHHHTTTBTTBCEEEEEEE-CTTCHHHHHHHHHHHHHTTCCEEECCSSH
T ss_pred             CcEEEEEEeCCCCchHHhHHHHHHHHHHHHHHHHHcCCCCCcEEEEEEec-CCCCHHHHHHHHHHHHhcCCccccCCccC
Confidence            468999999852 2     3357799999999998643222244443332 3355666666677666   3456666554