Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 83
cd05933 594
cd05933, ACSBG_like, Bubblegum-like very long-chai
8e-29 cd05907 456
cd05907, VL_LC_FACS_like, Long-chain fatty acid Co
1e-21 cd05932 504
cd05932, LC_FACS_bac, Bacterial long-chain fatty a
9e-19 COG1022 613
COG1022, FAA1, Long-chain acyl-CoA synthetases (AM
8e-16 COG0318 534
COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/
3e-12 cd05929 342
cd05929, BACL_like, Bacterial Bile acid CoA ligase
4e-12 cd05911 487
cd05911, Firefly_Luc_like, Firefly luciferase of l
7e-12 cd05927 539
cd05927, LC-FACS_euk, Eukaryotic long-chain fatty
8e-12 cd05936 468
cd05936, FC-FACS_FadD_like, Prokaryotic long-chain
4e-11 cd05917 347
cd05917, FACL_like_2, Uncharacterized subfamily of
3e-10 PRK07529 632
PRK07529, PRK07529, AMP-binding domain protein; Va
4e-10 pfam00501 412
pfam00501, AMP-binding, AMP-binding enzyme
2e-09 cd04433 338
cd04433, AFD_class_I, Adenylate forming domain, Cl
3e-09 PRK06187 521
PRK06187, PRK06187, long-chain-fatty-acid--CoA lig
4e-09 cd05944 359
cd05944, FACL_like_4, Uncharacterized subfamily of
9e-09 cd05909 489
cd05909, AAS_C, C-terminal domain of the acyl-acyl
1e-08 cd05904 504
cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)
2e-08 cd05912 407
cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase
1e-07 cd05903 437
cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA li
1e-07 PRK08633 1146
PRK08633, PRK08633, 2-acyl-glycerophospho-ethanola
2e-07 PRK07656 513
PRK07656, PRK07656, long-chain-fatty-acid--CoA lig
4e-07 PRK05677 562
PRK05677, PRK05677, long-chain-fatty-acid--CoA lig
7e-07 cd05941 430
cd05941, MCS, Malonyl-CoA synthetase (MCS)
1e-06 TIGR01923 436
TIGR01923, menE, O-succinylbenzoate-CoA ligase
3e-05 PRK08315 559
PRK08315, PRK08315, AMP-binding domain protein; Va
6e-05 TIGR03208 538
TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate
6e-05 PLN02387 696
PLN02387, PLN02387, long-chain-fatty-acid-CoA liga
2e-04 PLN02614 666
PLN02614, PLN02614, long-chain acyl-CoA synthetase
3e-04 cd05935 430
cd05935, LC_FACS_like, Putative long-chain fatty a
4e-04 COG0365 528
COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fat
7e-04 PLN02430 660
PLN02430, PLN02430, long-chain-fatty-acid-CoA liga
8e-04 PLN02736 651
PLN02736, PLN02736, long-chain acyl-CoA synthetase
8e-04 PRK08043 718
PRK08043, PRK08043, bifunctional acyl-[acyl carrie
9e-04 cd05906 560
cd05906, A_NRPS_TubE_like, The adenylation domain
0.001 PRK12583 558
PRK12583, PRK12583, acyl-CoA synthetase; Provision
0.002 PRK13295 547
PRK13295, PRK13295, cyclohexanecarboxylate-CoA lig
0.004 cd05908 499
cd05908, A_NRPS_MycA_like, The adenylation domain
0.004 cd05920 483
cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP l
0.004
>gnl|CDD|213299 cd05933, ACSBG_like, Bubblegum-like very long-chain fatty acid CoA synthetase (VL-FACS)
Back Hide alignment and domain information
Score = 106 bits (267), Expect = 8e-29
Identities = 40/81 (49%), Positives = 57/81 (70%), Gaps = 2/81 (2%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYFL--DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+GLDRC+ +GAA IS E +FL +I I E++GMSE +G HTVS P +++L G+
Sbjct: 315 LGLDRCQKFFTGAAPISRETLEFFLSLNIPIMELYGMSETSGPHTVSNPQNYRLLSCGKA 374
Query: 59 IPGTQTKIVDPDEEGNGEICL 79
+PG +TKI +PD +G GEIC+
Sbjct: 375 LPGCETKIHNPDADGIGEICI 395
This family of very long-chain fatty acid CoA synthetase is named bubblegum because Drosophila melanogaster mutant bubblegum (BGM) has elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene of this family. The human homolog (hsBG) has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. VL-FACS is involved in the first reaction step of very long chain fatty acid degradation. It catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 594
>gnl|CDD|213275 cd05907, VL_LC_FACS_like, Long-chain fatty acid CoA synthetases and Bubblegum-like very long-chain fatty acid CoA synthetases
Back Show alignment and domain information
Score = 86.4 bits (215), Expect = 1e-21
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 7/82 (8%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+G R R ++SG A + E+ +F L I I E +G++E +G TV+ P D ++ VG+
Sbjct: 212 LGGGRLRFAVSGGAPLPPEVLEFFRALGIPILEGYGLTETSGVATVNRPGDIRIGTVGKP 271
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
+PG + +I + +GEI ++
Sbjct: 272 LPGVEVRIAE-----DGEILVR 288
This family includes long-chain fatty acid (C12-C20) CoA synthetases and Bubblegum-like very long-chain (>C20) fatty acid CoA synthetases. FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Eukaryotes generally have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Drosophila melanogaster mutant bubblegum (BGM) have elevated levels of very-long-chain fatty acids (VLCFA) caused by a defective gene later named bubblegum. The human homolog (hsBG) of bubblegum has been characterized as a very long chain fatty acid CoA synthetase that functions specifically in the brain; hsBG may play a central role in brain VLCFA metabolism and myelinogenesis. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 456
>gnl|CDD|213298 cd05932, LC_FACS_bac, Bacterial long-chain fatty acid CoA synthetase (LC-FACS), including Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase
Back Show alignment and domain information
Score = 78.5 bits (194), Expect = 9e-19
Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 1 MGLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
+GLD+ R++ SGAA + L ++ L + ICE +GM+E T++ P D ++ VG+
Sbjct: 272 LGLDQARLAGSGAAPMPPALIAWYRKLGLPICEGYGMTENFAYSTLNYPGDRRIGTVGKP 331
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
IPG + KI E+ GEI ++
Sbjct: 332 IPGVELKI---SED--GEILIR 348
The members of this family are bacterial long-chain fatty acid CoA synthetase. Marinobacter hydrocarbonoclasticus isoprenoid Coenzyme A synthetase in this family is involved in the synthesis of isoprenoid wax ester storage compounds when grown on phytol as the sole carbon source. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. Free fatty acids must be "activated" to their CoA thioesters before participating in most catabolic and anabolic reactions. Length = 504
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Back Show alignment and domain information
Score = 70.0 bits (172), Expect = 8e-16
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R +LSG A +S EL +F L I I E +G++E + +V+ PD F L VG+ +PG
Sbjct: 353 GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPG 412
Query: 62 TQTKIVDPDEEGNGEICLK 80
+ KI D +GEI ++
Sbjct: 413 IEVKIAD-----DGEILVR 426
>gnl|CDD|223395 COG0318, CaiC, Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Score = 59.8 bits (145), Expect = 3e-12
Identities = 32/85 (37%), Positives = 46/85 (54%), Gaps = 11/85 (12%)
Query: 7 RVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIP 60
R+ LSG A + EL F + IAI E +G++E + T++ PDD K VGR +P
Sbjct: 294 RLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLP 353
Query: 61 GTQTKIVDPDEEGN-----GEICLK 80
G + +IVDPD GEI ++
Sbjct: 354 GVEVRIVDPDGGEVLPGEVGEIWVR 378
>gnl|CDD|213295 cd05929, BACL_like, Bacterial Bile acid CoA ligases and similar proteins
Back Show alignment and domain information
Score = 59.0 bits (144), Expect = 4e-12
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDF--KLDGVGRTIPG 61
R+ + GAA + ELKR ++ + +GM+E T+ +P+D+ KL VGR +PG
Sbjct: 118 RLIIYGAAPMPAELKRAMIEWFGPVFVQGYGMTETGPTTTLLSPEDWLRKLGSVGRPVPG 177
Query: 62 TQTKIVDPDEEGN-------GEICLK 80
+ +IVD D G GEI ++
Sbjct: 178 VEVRIVDED--GRELPPGEVGEIVVR 201
Bile acid-Coenzyme A ligase catalyzes the formation of bile acid-CoA conjugates in a two-step reaction: the formation of a bile acid-AMP molecule as an intermediate, followed by the formation of a bile acid-CoA. This ligase requires a bile acid with a free carboxyl group, ATP, Mg2+, and CoA for synthesis of the final bile acid-CoA conjugate. The bile acid-CoA ligation is believed to be the initial step in the bile acid 7alpha-dehydroxylation pathway in the intestinal bacterium Eubacterium sp. Length = 342
>gnl|CDD|213279 cd05911, Firefly_Luc_like, Firefly luciferase of light emitting insects and 4-Coumarate-CoA Ligase (4CL)
Back Show alignment and domain information
Score = 58.8 bits (143), Expect = 7e-12
Identities = 32/84 (38%), Positives = 46/84 (54%), Gaps = 10/84 (11%)
Query: 7 RVSLSGAAAISTEL----KRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT 62
RV SGAA +S EL ++ F + I + +GM+E A T++ P D K VGR +P
Sbjct: 266 RVIFSGAAPLSKELQEELRKRFPNTTIKQGYGMTETGPATTLTPPGDEKPGSVGRLVPNV 325
Query: 63 QTKIVDPDEEGN------GEICLK 80
+ KIVD D + GE+C+K
Sbjct: 326 EAKIVDEDGGKSLGPNERGELCVK 349
This family contains two functionally unique groups of proteins; one group is insect firefly luciferases and the other is plant 4-coumarate:coenzyme A ligases. However, they share significant sequence similarity in spite of their functional diversity. Luciferase catalyzes the production of light in the presence of MgATP, molecular oxygen, and luciferin. In the first step, luciferin is activated by acylation of its carboxylate group with ATP, resulting in an enzyme-bound luciferyl adenylate. In the second step, luciferyl adenylate reacts with molecular oxygen, producing an enzyme-bound excited state product (Luc=O*) and releasing AMP. This excited-state product then decays to the ground state (Luc=O), emitting a quantum of visible light. 4-coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and then the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 487
>gnl|CDD|213293 cd05927, LC-FACS_euk, Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)
Back Show alignment and domain information
Score = 58.3 bits (142), Expect = 8e-12
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 11/87 (12%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R+ LSG A +S + + + C V +G++E T+S P D VG +P
Sbjct: 270 RVRLMLSGGAPLSPDTQEFLRVALGCPVLQGYGLTETCAGGTLSDPGDTTTGHVGPPLPC 329
Query: 62 TQTKIVD-P-------DEEGNGEICLK 80
+ K+VD P D+ GEIC++
Sbjct: 330 CEIKLVDVPEMGYFAKDDPPRGEICIR 356
The members of this family are eukaryotic fatty acid CoA synthetases that activate fatty acids with chain lengths of 12 to 20. LC-FACS catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, and the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Organisms tend to have multiple isoforms of LC-FACS genes with multiple splice variants. For example, nine genes are found in Arabidopsis and six genes are expressed in mammalian cells. Length = 539
>gnl|CDD|213302 cd05936, FC-FACS_FadD_like, Prokaryotic long-chain fatty acid CoA synthetases similar to Escherichia coli FadD
Back Show alignment and domain information
Score = 56.4 bits (137), Expect = 4e-11
Identities = 25/85 (29%), Positives = 43/85 (50%), Gaps = 13/85 (15%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG A + E+ F + + +G++E + TV+ D + G +G +PGT
Sbjct: 245 RLCISGGAPLPVEVAERFEEKTGAPLVEGYGLTETSPVTTVNPLDGERKPGSIGLPLPGT 304
Query: 63 QTKIVDPDEEGN-------GEICLK 80
+ KIVD EGN GE+ ++
Sbjct: 305 EVKIVDD--EGNELPPGEVGELVVR 327
This subfamily of the AMP-forming adenylation family contains Escherichia coli FadD and similar prokaryotic fatty acid CoA synthetases. FadD was characterized as a long-chain fatty acid CoA synthetase. The gene fadD is regulated by the fatty acid regulatory protein FadR. Fatty acid CoA synthetase catalyzes the formation of fatty acyl-CoA in a two-step reaction: the formation of a fatty acyl-AMP molecule as an intermediate, followed by the formation of a fatty acyl-CoA. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 468
>gnl|CDD|213284 cd05917, FACL_like_2, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 54.1 bits (131), Expect = 3e-10
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 16/92 (17%)
Query: 3 LDRCRVSLSGAAAISTEL-KRYFLDIAICEV---FGMSECAGAHTVSAPDDF---KLDGV 55
L R +SG A + EL +R + + E+ +GM+E +G T ++ DD + V
Sbjct: 116 LSSLRTGISGGAPVPPELVRRIREEFPMAEITTGYGMTETSGVGTQTSGDDPYEDRPGTV 175
Query: 56 GRTIPGTQTKIVDPDEEGN-------GEICLK 80
GR +PG + KIVDPD G GEIC++
Sbjct: 176 GRPLPGVEVKIVDPD--GGEVPPGEVGEICVR 205
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 347
>gnl|CDD|236043 PRK07529, PRK07529, AMP-binding domain protein; Validated
Back Show alignment and domain information
Score = 53.8 bits (130), Expect = 4e-10
Identities = 24/88 (27%), Positives = 41/88 (46%), Gaps = 14/88 (15%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R +L GAA + E+ R F + I E +G++E +V+ PD + G VG +P
Sbjct: 336 RYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQ 395
Query: 63 QTKIVDPDEEGN----------GEICLK 80
+ ++V D+ G G +C+
Sbjct: 396 RVRVVILDDAGRYLRDCAVDEVGVLCIA 423
>gnl|CDD|215954 pfam00501, AMP-binding, AMP-binding enzyme
Back Show alignment and domain information
Score = 52.0 bits (125), Expect = 2e-09
Identities = 23/89 (25%), Positives = 42/89 (47%), Gaps = 11/89 (12%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDDFKLDG--VG 56
L R+ LSG + EL R + + + +G +E T + P D ++ +G
Sbjct: 246 LSSLRLVLSGGEPLPPELLRRLRERFGGVPLVNGYGPTETTVVATANLPGDPEVKPGSIG 305
Query: 57 RTIPGTQTKIVDPDEE-----GNGEICLK 80
R +PG + K++D + E GE+C++
Sbjct: 306 RPLPGVEVKVLDEEGEPVPPGEVGELCIR 334
>gnl|CDD|213270 cd04433, AFD_class_I, Adenylate forming domain, Class I
Back Show alignment and domain information
Score = 51.1 bits (123), Expect = 3e-09
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 9/83 (10%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG-VGRTIPGT 62
R+ +SG +S EL F + I E +G++E + + + + K G VGR +PG
Sbjct: 119 RLLISGGEPLSPELLERFEERPGAPILEGYGLTETSVVTSTNPDSELKKPGTVGRPVPGV 178
Query: 63 QTKIVDPDEEGN-----GEICLK 80
+ ++VD + + GE+ ++
Sbjct: 179 EVRVVDEEGKPLPPGEVGELVVR 201
This family includes acyl- and aryl-CoA ligases, as well as the adenylation domain of nonribosomal peptide synthetases and firefly luciferases. The adenylate-forming enzymes catalyze an ATP-dependent two-step reaction to first activate a carboxylate substrate as an adenylate and then transfer the carboxylate to the pantetheine group of either coenzyme A or an acyl-carrier protein. The active site of the domain is located at the interface of a large N-terminal subdomain and a smaller C-terminal subdomain. Length = 338
>gnl|CDD|235730 PRK06187, PRK06187, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 51.0 bits (123), Expect = 4e-09
Identities = 26/90 (28%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDG------VGR 57
R+ + G AA+ L R F + I + + +GM+E + +V P+D GR
Sbjct: 284 RLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGR 343
Query: 58 TIPGTQTKIVDPDEE-----GN--GEICLK 80
+PG + +IVD D + G GEI ++
Sbjct: 344 PLPGVEARIVDDDGDELPPDGGEVGEIIVR 373
>gnl|CDD|213309 cd05944, FACL_like_4, Uncharacterized subfamily of fatty acid CoA ligase (FACL)
Back Show alignment and domain information
Score = 50.0 bits (120), Expect = 9e-09
Identities = 21/77 (27%), Positives = 36/77 (46%), Gaps = 5/77 (6%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGT 62
R +L+GAA + E+ R F + + E +GM+E G ++ + VG +P T
Sbjct: 125 RYALTGAAPLPVEVARRFEAVTGVPVVEGYGMTEGTGVSAINPRGGPRRPGSVGLRLPYT 184
Query: 63 QTKIVDPDEEGN-GEIC 78
+ ++ D G G C
Sbjct: 185 RVRVAKLDAGGALGRDC 201
Fatty acyl-CoA ligases catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. This is a required step before free fatty acids can participate in most catabolic and anabolic reactions. Length = 359
>gnl|CDD|213277 cd05909, AAS_C, C-terminal domain of the acyl-acyl carrier protein synthetase (also called 2-acylglycerophosphoethanolamine acyltransferase, Aas)
Back Show alignment and domain information
Score = 49.1 bits (118), Expect = 1e-08
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
R+ ++GA + + F + I I E +G +EC+ +V+ P K VGR +PG +
Sbjct: 262 RLVVAGAEKLPEATRELFEEKFGIRILEGYGATECSPVISVNTPMGNKPGTVGRPLPGIE 321
Query: 64 TKIVDPD 70
+IV P+
Sbjct: 322 VRIVSPE 328
Acyl-acyl carrier protein synthase (Aas) is a membrane protein responsible for a minor pathway of incorporating exogenous fatty acids into membrane phospholipids. Its in vitro activity is characterized by the ligation of free fatty acids between 8 and 18 carbons in length to the acyl carrier protein sulfydryl group (ACP-SH) in the presence of ATP and Mg2+. However, its in vivo function is as a 2-acylglycerophosphoethanolamine (2-acyl-GPE) acyltransferase. The reaction occurs in two steps: the acyl chain is first esterified to acyl carrier protein (ACP) via a thioester bond, followed by a second step where the acyl chain is transferred to a 2-acyllysophospholipid, thus completing the transacylation reaction. This model represents the C-terminal domain of the enzyme, which belongs to the class I adenylate-forming enzyme family, including acyl-CoA synthetases. Length = 489
>gnl|CDD|213272 cd05904, 4CL, 4-Coumarate-CoA Ligase (4CL)
Back Show alignment and domain information
Score = 48.8 bits (117), Expect = 2e-08
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 12/83 (14%)
Query: 10 LSGAAAISTEL----KRYFLDIAICEVFGMSE-CAGAHTVSAP-DDFKLDGVGRTIPGTQ 63
SGAA + EL + F + + + +GM+E P D K VGR +P +
Sbjct: 281 GSGAAPLGKELAEAFRARFPGVELGQGYGMTESSPVTTMCPVPEKDPKPGSVGRLVPNVE 340
Query: 64 TKIVDPD-----EEGN-GEICLK 80
KIVDP+ GE+ ++
Sbjct: 341 AKIVDPETGESLPPNQPGELWVR 363
4-Coumarate:coenzyme A ligase is a key enzyme in the phenylpropanoid metabolic pathway for monolignol and flavonoid biosynthesis. It catalyzes the synthesis of hydroxycinnamate-CoA thioesters in a two-step reaction, involving the formation of hydroxycinnamate-AMP anhydride and the nucleophilic substitution of AMP by CoA. The phenylpropanoid pathway is one of the most important secondary metabolism pathways in plants and hydroxycinnamate-CoA thioesters are the precursors of lignin and other important phenylpropanoids. Length = 504
>gnl|CDD|213280 cd05912, OSB_CoA_lg, O-succinylbenzoate-CoA ligase (also known as O-succinylbenzoate-CoA synthase, OSB-CoA synthetase, or MenE)
Back Show alignment and domain information
Score = 46.8 bits (112), Expect = 1e-07
Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 3 LDRCRVSLSGAAAISTEL--KRYFLDIAICEVFGMSECAGAHTVSAPDDF--KLDGVGRT 58
L R L G A I L + I + +GM+E A PDDF KL VG+
Sbjct: 188 LSSLRAVLLGGAPIPPSLLEQARQRGIPLYPTYGMTETASQVATLKPDDFLAKLGSVGKP 247
Query: 59 IPGTQTKIVDPDEEGNGEICLK 80
+PG + +IV+P +GEI ++
Sbjct: 248 LPGRELRIVNP---QDGEILVR 266
O-succinylbenzoic acid-CoA synthase catalyzes the coenzyme A (CoA)- and ATP-dependent conversion of o-succinylbenzoic acid to o-succinylbenzoyl-CoA. The reaction is the fourth step of the biosynthesis pathway of menaquinone (vitamin K2). In certain bacteria, menaquinone is used during fumarate reduction in anaerobic respiration. In cyanobacteria, the product of the menaquinone pathway is phylloquinone (2-methyl-3-phytyl-1,4-naphthoquinone), a molecule used exclusively as an electron transfer cofactor in Photosystem 1. In green sulfur bacteria and heliobacteria, menaquinones are used as loosely bound secondary electron acceptors in the photosynthetic reaction center. Length = 407
>gnl|CDD|213271 cd05903, CHC_CoA_lg, Cyclohexanecarboxylate-CoA ligase (also called cyclohex-1-ene-1-carboxylate:CoA ligase)
Back Show alignment and domain information
Score = 46.4 bits (111), Expect = 1e-07
Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 10/84 (11%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSEC--AGAHTVSAPDDFKLDGVGRTIPG 61
RV L G A + EL R + + +GM+E T PDD + GR +PG
Sbjct: 211 RVFLCGGAPVPRELARRAAEALGAKVVRAYGMTEVPLVTVGTPDDPDDKRAATDGRPVPG 270
Query: 62 TQTKIVDPDEE-----GNGEICLK 80
+ +IVD D GE+ ++
Sbjct: 271 VEVRIVDDDGNDVPPGEEGELQVR 294
Cyclohexanecarboxylate-CoA ligase activates the aliphatic ring compound, cyclohexanecarboxylate, for degradation. It catalyzes the synthesis of cyclohexanecarboxylate-CoA thioesters in a two-step reaction involving the formation of cyclohexanecarboxylate-AMP anhydride, followed by the nucleophilic substitution of AMP by CoA. Length = 437
>gnl|CDD|236315 PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Back Show alignment and domain information
Score = 46.1 bits (110), Expect = 2e-07
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 7 RVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPD----------DFKLD 53
R+ ++GA + E+ F + I I E +G +E + +V+ PD K
Sbjct: 901 RLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEG 960
Query: 54 GVGRTIPGTQTKIVDPD 70
VG +PG +IVDP+
Sbjct: 961 SVGMPLPGVAVRIVDPE 977
>gnl|CDD|236072 PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 45.3 bits (108), Expect = 4e-07
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 12/86 (13%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAIC-EVFGMSECAGAHTVSAPDDFKLDG---VGRTI 59
R++++GAA++ L F L + I +G+SE +G T + DD + +G I
Sbjct: 284 RLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAI 343
Query: 60 PGTQTKIVDPDEEGN-----GEICLK 80
G + KIV+ E GE+ ++
Sbjct: 344 AGVENKIVNELGEEVPVGEVGELLVR 369
>gnl|CDD|168170 PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Score = 44.4 bits (105), Expect = 7e-07
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 12/84 (14%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
+++LSG A+ + ++ AICE +GM+E + +V+ ++ +G +P T
Sbjct: 329 KLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTL 388
Query: 64 TKIVDPDEEGN-------GEICLK 80
K++D D GN GE+C+K
Sbjct: 389 CKVIDDD--GNELPLGEVGELCVK 410
>gnl|CDD|213307 cd05941, MCS, Malonyl-CoA synthetase (MCS)
Back Show alignment and domain information
Score = 43.8 bits (104), Expect = 1e-06
Identities = 26/89 (29%), Positives = 42/89 (47%), Gaps = 21/89 (23%)
Query: 7 RVSLSGAAAISTELKRYFLDI---AICEVFGMSECAGAHTVSAPDDFKLDG------VGR 57
R+ +SG+AA+ + + + + E +GM+E A +S P LDG VG
Sbjct: 209 RLFVSGSAALPVPVLERWEERTGHTLLERYGMTETGMA--LSNP----LDGERRPGTVGL 262
Query: 58 TIPGTQTKIVDPD------EEGNGEICLK 80
+PG + +IVD D GEI ++
Sbjct: 263 PLPGVEVRIVDEDGGEPLAAGEVGEIQVR 291
MCS catalyzes the formation of malonyl-CoA in a two-step reaction consisting of the adenylation of malonate with ATP, followed by malonyl transfer from malonyl-AMP to CoA. Malonic acid and its derivatives are the building blocks of polyketides and malonyl-CoA serves as the substrate of polyketide synthases. Malonyl-CoA synthetase has broad substrate tolerance and can activate a variety of malonyl acid derivatives. MCS may play an important role in biosynthesis of polyketides, the important secondary metabolites with therapeutic and agrochemical utility. Length = 430
>gnl|CDD|162605 TIGR01923, menE, O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Score = 40.1 bits (94), Expect = 3e-05
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 11/78 (14%)
Query: 10 LSGAAAISTELKRYFLDIAICE------VFGMSECAGAHTVSAPDDFK-LDGVGRTIPGT 62
L G +AI L ++ A +GM+E T + P+ VGR + G
Sbjct: 225 LLGGSAIPAPL----IEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGR 280
Query: 63 QTKIVDPDEEGNGEICLK 80
+ KI ++EG+GEI +K
Sbjct: 281 EIKIKVDNKEGHGEIMVK 298
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 436
>gnl|CDD|236236 PRK08315, PRK08315, AMP-binding domain protein; Validated
Back Show alignment and domain information
Score = 39.0 bits (92), Expect = 6e-05
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 15/64 (23%)
Query: 26 DIAICEVFGMSECAGAHTVSAPDDFKLD----GVGRTIPGTQTKIVDPDEEGN------- 74
++ I +GM+E + T + DD L+ VGR +P + KIVDP E G
Sbjct: 343 EVTIA--YGMTETSPVSTQTRTDD-PLEKRVTTVGRALPHLEVKIVDP-ETGETVPRGEQ 398
Query: 75 GEIC 78
GE+C
Sbjct: 399 GELC 402
>gnl|CDD|132252 TIGR03208, cyc_hxne_CoA_lg, cyclohexanecarboxylate-CoA ligase
Back Show alignment and domain information
Score = 39.1 bits (91), Expect = 6e-05
Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 19 ELKRYFLDIAICEVFGMSECAGAHTVSAPDD-FKLDGV--GRTIPGTQTKIVDPD 70
E L I +GM+E GA TV+ PDD + GR +PG + K++D +
Sbjct: 328 ERAWELLGALIVSAWGMTEN-GAVTVTEPDDALEKASTTDGRPLPGVEVKVIDAN 381
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris. Length = 538
>gnl|CDD|215217 PLN02387, PLN02387, long-chain-fatty-acid-CoA ligase family protein
Back Show alignment and domain information
Score = 37.8 bits (88), Expect = 2e-04
Identities = 28/76 (36%), Positives = 40/76 (52%), Gaps = 11/76 (14%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAIC------EVFGMSE-CAGAHTVSAPDDFKLDGVGR 57
R R LSG A +S + +R+ I IC + +G++E CAGA T S DD + VG
Sbjct: 421 RIRFMLSGGAPLSGDTQRF---INICLGAPIGQGYGLTETCAGA-TFSEWDDTSVGRVGP 476
Query: 58 TIPGTQTKIVDPDEEG 73
+P K+V +E G
Sbjct: 477 PLPCCYVKLVSWEEGG 492
>gnl|CDD|166255 PLN02614, PLN02614, long-chain acyl-CoA synthetase
Back Show alignment and domain information
Score = 36.9 bits (85), Expect = 3e-04
Identities = 27/87 (31%), Positives = 45/87 (51%), Gaps = 14/87 (16%)
Query: 7 RVSLSGAAAISTELKRYFLDIAICEV---FGMSE-CAGAHTVSAPDDFKLDG-VGRTIPG 61
R+ LSGAA +++ ++ + +A C V +G++E CAG VS PD+ + G VG +P
Sbjct: 389 RIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTF-VSLPDELDMLGTVGPPVPN 447
Query: 62 TQTKIVDPDE--------EGNGEICLK 80
++ E GEIC++
Sbjct: 448 VDIRLESVPEMEYDALASTPRGEICIR 474
>gnl|CDD|213301 cd05935, LC_FACS_like, Putative long-chain fatty acid CoA ligase
Back Show alignment and domain information
Score = 36.9 bits (86), Expect = 4e-04
Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
Query: 31 EVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD--EE----GNGEICLK 80
E +G++E + PD K +G + GT +++DP+ EE GEI ++
Sbjct: 229 EGYGLTETHTCTHFNPPDRPKPQCLGIPVFGTDARVIDPETGEELPPGEEGEIVVR 284
The members of this family are putative long-chain fatty acyl-CoA synthetases, which catalyze the ATP-dependent activation of fatty acids in a two-step reaction. The carboxylate substrate first reacts with ATP to form an acyl-adenylate intermediate, which then reacts with CoA to produce an acyl-CoA ester. Fatty acyl-CoA synthetases are responsible for fatty acid degradation as well as physiological regulation of cellular functions via the production of fatty acyl-CoA esters. Length = 430
>gnl|CDD|223442 COG0365, Acs, Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Score = 36.1 bits (84), Expect = 7e-04
Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 7 RVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQ 63
RV S ++ E +F L + I +++G +E P K G +PG
Sbjct: 293 RVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRPP-VKNGSSGLPLPGYA 351
Query: 64 TKIVDPDEE----GNGEICLK 80
+ VD + G GE+ ++
Sbjct: 352 VRRVDDEGNPVPPGVGELVVR 372
>gnl|CDD|178049 PLN02430, PLN02430, long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Score = 35.9 bits (83), Expect = 8e-04
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 18/91 (19%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIAIC----EVFGMSECAGAHTVSAPDDFKLDG-VGRTI 59
R R+ +SG A +STE++ FL + C + +G++E G T+ PD+ + G VG
Sbjct: 384 RLRLLISGGAPLSTEIEE-FLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVG--A 440
Query: 60 PGTQTKI---------VDP-DEEGNGEICLK 80
P ++ DP E GEIC++
Sbjct: 441 PAVYNELRLEEVPEMGYDPLGEPPRGEICVR 471
>gnl|CDD|178337 PLN02736, PLN02736, long-chain acyl-CoA synthetase
Back Show alignment and domain information
Score = 35.8 bits (83), Expect = 8e-04
Identities = 25/89 (28%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 5 RCRVSLSGAAAISTELKRYFLDIA----ICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 60
R R SGA+ +S ++ FL I + E +GM+E + + D VG P
Sbjct: 377 RVRFMSSGASPLSPDVME-FLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNP 435
Query: 61 GTQTKIVDPDEEG---------NGEICLK 80
+ K+VD E GEIC++
Sbjct: 436 ACEVKLVDVPEMNYTSEDQPYPRGEICVR 464
>gnl|CDD|181207 PRK08043, PRK08043, bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Back Show alignment and domain information
Score = 35.8 bits (83), Expect = 9e-04
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
Query: 5 RCRVSLSGAAAISTELKRYFLD---IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPG 61
R R ++GA + K+ + D + I E +G++ECA +++ P K VGR +PG
Sbjct: 480 RLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPG 539
Query: 62 TQTKIV 67
+++
Sbjct: 540 MDARLL 545
>gnl|CDD|213274 cd05906, A_NRPS_TubE_like, The adenylation domain (A domain) of a family of nonribosomal peptide synthetases (NRPSs) synthesizing toxins and antitumor agents
Back Show alignment and domain information
Score = 35.3 bits (82), Expect = 0.001
Identities = 26/102 (25%), Positives = 36/102 (35%), Gaps = 36/102 (35%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLDI---------AICEVFGMSE-CAG---AHTVSAPDD 49
L R ++ A+ + R FL++ AI FGMSE C+G + D
Sbjct: 288 LSSLRYIINAGEAVVAKTIRRFLELLAPYGLPADAIRPAFGMSETCSGVTYSRGFRTGPD 347
Query: 50 ------FKLDG-----------------VGRTIPGTQTKIVD 68
L G +GR IPG +IVD
Sbjct: 348 TGGVLVDSLTGPLRFAAADHPEAVTFVELGRPIPGVAIRIVD 389
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as an (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms a thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPSs that synthesize toxins and antitumor agents; for example, TubE for Tubulysine, CrpA for cryptophycin, TdiA for terrequinone A, KtzG for kutzneride, and Vlm1/Vlm2 for Valinomycin. Nonribosomal peptide synthetases are large multifunctional enzymes which synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 560
>gnl|CDD|237145 PRK12583, PRK12583, acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Score = 35.1 bits (81), Expect = 0.002
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 10 LSGAAAISTELKRYFLDIAICEV---FGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQ 63
++GA ++R ++ + EV +GM+E + + D +++ VGRT P +
Sbjct: 324 MAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLE 383
Query: 64 TKIVDPDEE-----GNGEICLK 80
K+VDPD GE+C +
Sbjct: 384 VKVVDPDGATVPRGEIGELCTR 405
>gnl|CDD|171961 PRK13295, PRK13295, cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Score = 33.9 bits (78), Expect = 0.004
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 11/72 (15%)
Query: 7 RVSLSGAAAIS---TELKRYFLDIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRT 58
R L A I E R L I +GM+E GA T++ DD DG
Sbjct: 315 RTFLCAGAPIPGALVERARAALGAKIVSAWGMTEN-GAVTLTKLDDPDERASTTDG--CP 371
Query: 59 IPGTQTKIVDPD 70
+PG + ++VD D
Sbjct: 372 LPGVEVRVVDAD 383
>gnl|CDD|213276 cd05908, A_NRPS_MycA_like, The adenylation domain of nonribosomal peptide synthetases (NRPS) similar to mycosubtilin synthase subunit A (MycA)
Back Show alignment and domain information
Score = 33.8 bits (78), Expect = 0.004
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 10/86 (11%)
Query: 7 RVSLSGAAAISTELKRYFLD---------IAICEVFGMSE-CAGAHTVSAPDDFKLDGVG 56
R+ +GA IS +L FL+ A+ V+G++E + FK +
Sbjct: 231 RLIFNGAEPISADLCEEFLEKMAPFGLRPNAMYPVYGLAEATLAVSFPKPGEPFKTVCLD 290
Query: 57 RTIPGTQTKIVDPDEEGNGEICLKDL 82
R KI++ D + + I ++
Sbjct: 291 RNHLKVGVKIIEIDPKNSDAISFVEV 316
The adenylation (A) domain of NRPS recognizes a specific amino acid or hydroxy acid and activates it as (amino)-acyl adenylate by hydrolysis of ATP. The activated acyl moiety then forms thioester to the enzyme-bound cofactor phosphopantetheine of a peptidyl carrier protein domain. This family includes NRPS similar to mycosubtilin synthase subunit A (MycA). Mycosubtilin, which is characterized by a beta-amino fatty acid moiety linked to the circular heptapeptide Asn-Tyr-Asn-Gln-Pro-Ser-Asn, belongs to the iturin family of lipopeptide antibiotics. The mycosubtilin synthase subunit A (MycA) combines functional domains derived from peptide synthetases, amino transferases, and fatty acid synthases. Nonribosomal peptide synthetases are large multifunction enzymes that synthesize many therapeutically useful peptides. NRPS has a distinct modular structure in which each module is responsible for the recognition, activation, and, in some cases, modification of a single amino acid residue of the final peptide product. The modules can be subdivided into domains that catalyze specific biochemical reactions. Length = 499
>gnl|CDD|213287 cd05920, 23DHB-AMP_lg, 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Score = 33.7 bits (78), Expect = 0.004
Identities = 28/88 (31%), Positives = 37/88 (42%), Gaps = 14/88 (15%)
Query: 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD---FKLDGVG 56
L RV G A +S EL R L + +VFGM+E G + DD + G
Sbjct: 254 LSSLRVIQVGGAPLSPELARRVEERLGCPLQQVFGMAE--GLVNYTRLDDPPDVIMRTQG 311
Query: 57 RTI-PGTQTKIVDPD----EEGN-GEIC 78
R I P + +IVD G GE+
Sbjct: 312 RPISPADEIRIVDDQGEPVPPGEVGELL 339
2,3-dihydroxybenzoate-AMP ligase activates 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate. However, it can also catalyze the ATP-PPi exchange for 2,3-DHB analogs, such as salicyclic acid (o-hydrobenzoate), as well as 2,4-DHB and 2,5-DHB, but with less efficiency. Proteins in this family are the stand-alone adenylation components of non-ribosomal peptide synthases (NRPSs) involved in the biosynthesis of siderophores, which are low molecular weight iron-chelating compounds synthesized by many bacteria to aid in the acquisition of this vital trace elements. In Escherichia coli, the 2,3-dihydroxybenzoate-AMP ligase is called EntE, the adenylation component of the enterobactin NRPS system. Length = 483
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
83
COG1022 613
FAA1 Long-chain acyl-CoA synthetases (AMP-forming)
99.71 KOG1256|consensus 691
99.67 KOG1176|consensus 537
99.64 PLN02387 696
long-chain-fatty-acid-CoA ligase family protein
99.63 PTZ00342 746
acyl-CoA synthetase; Provisional
99.63 PF00501 417
AMP-binding: AMP-binding enzyme; InterPro: IPR0008
99.62 COG0365 528
Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid l
99.62 PRK06334 539
long chain fatty acid--[acyl-carrier-protein] liga
99.61 PRK05677 562
long-chain-fatty-acid--CoA ligase; Validated
99.59 PTZ00237 647
acetyl-CoA synthetase; Provisional
99.59 PLN02736 651
long-chain acyl-CoA synthetase
99.58 COG0318 534
CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid l
99.58 PRK08043 718
bifunctional acyl-[acyl carrier protein] synthetas
99.58 PRK07788 549
acyl-CoA synthetase; Validated
99.57 PTZ00216 700
acyl-CoA synthetase; Provisional
99.57 PRK12492 562
long-chain-fatty-acid--CoA ligase; Provisional
99.56 PRK13382 537
acyl-CoA synthetase; Provisional
99.56 PRK07529 632
AMP-binding domain protein; Validated
99.56 PLN02614 666
long-chain acyl-CoA synthetase
99.55 PRK06060 705
acyl-CoA synthetase; Validated
99.55 PRK13295 547
cyclohexanecarboxylate-CoA ligase; Reviewed
99.54 PRK08633 1146
2-acyl-glycerophospho-ethanolamine acyltransferase
99.54 KOG1180|consensus 678
99.53 PRK12582 624
acyl-CoA synthetase; Provisional
99.53 PRK04319 570
acetyl-CoA synthetase; Provisional
99.53 PRK08180 614
feruloyl-CoA synthase; Reviewed
99.52 PRK13383 516
acyl-CoA synthetase; Provisional
99.52 PRK08314 546
long-chain-fatty-acid--CoA ligase; Validated
99.52 TIGR02316 628
propion_prpE propionate--CoA ligase. This family c
99.52 PRK06839 496
acyl-CoA synthetase; Validated
99.51 PLN02860 563
o-succinylbenzoate-CoA ligase
99.51 PLN03051 499
acyl-activating enzyme; Provisional
99.5 TIGR03208 538
cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase.
99.5 PLN02574 560
4-coumarate--CoA ligase-like
99.5 PRK07656 513
long-chain-fatty-acid--CoA ligase; Validated
99.49 PLN02861 660
long-chain-fatty-acid-CoA ligase
99.49 PRK10524 629
prpE propionyl-CoA synthetase; Provisional
99.49 PRK09274 552
peptide synthase; Provisional
99.49 TIGR02188 625
Ac_CoA_lig_AcsA acetate--CoA ligase. This model de
99.49 PRK00174 637
acetyl-CoA synthetase; Provisional
99.48 PRK05851 525
long-chain-fatty-acid--[acyl-carrier-protein] liga
99.48 PRK09088 488
acyl-CoA synthetase; Validated
99.48 PRK12406 509
long-chain-fatty-acid--CoA ligase; Provisional
99.48 PLN02654 666
acetate-CoA ligase
99.48 PRK06814 1140
acylglycerophosphoethanolamine acyltransferase; Pr
99.48 PRK08974 560
long-chain-fatty-acid--CoA ligase; Validated
99.47 PRK07787 471
acyl-CoA synthetase; Validated
99.46 PRK07059 557
Long-chain-fatty-acid--CoA ligase; Validated
99.46 TIGR01733 408
AA-adenyl-dom amino acid adenylation domain. This
99.46 PRK07514 504
malonyl-CoA synthase; Validated
99.46 PRK06087 547
short chain acyl-CoA synthetase; Reviewed
99.46 TIGR02262 508
benz_CoA_lig benzoate-CoA ligase family. Character
99.46 PLN02430 660
long-chain-fatty-acid-CoA ligase
99.45 PRK08751 560
putative long-chain fatty acyl CoA ligase; Provisi
99.45 PRK05605 573
long-chain-fatty-acid--CoA ligase; Validated
99.45 PRK06187 521
long-chain-fatty-acid--CoA ligase; Validated
99.44 PRK07445 452
O-succinylbenzoic acid--CoA ligase; Reviewed
99.44 PRK06145 497
acyl-CoA synthetase; Validated
99.43 PRK07769 631
long-chain-fatty-acid--CoA ligase; Validated
99.42 PRK08315 559
AMP-binding domain protein; Validated
99.42 PRK03640 483
O-succinylbenzoic acid--CoA ligase; Provisional
99.42 PRK03584 655
acetoacetyl-CoA synthetase; Provisional
99.42 PRK12583 558
acyl-CoA synthetase; Provisional
99.42 TIGR03098 515
ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosor
99.42 PRK07470 528
acyl-CoA synthetase; Validated
99.42 PRK07638 487
acyl-CoA synthetase; Validated
99.41 PRK08276 502
long-chain-fatty-acid--CoA ligase; Validated
99.41 PRK08316 523
acyl-CoA synthetase; Validated
99.41 PRK12316 5163
peptide synthase; Provisional
99.41 PRK12467 3956
peptide synthase; Provisional
99.4 PRK06188 524
acyl-CoA synthetase; Validated
99.4 PRK10252 1296
entF enterobactin synthase subunit F; Provisional
99.4 PRK05857 540
acyl-CoA synthetase; Validated
99.4 PRK13390 501
acyl-CoA synthetase; Provisional
99.39 PLN02330 546
4-coumarate--CoA ligase-like 1
99.39 PRK12316 5163
peptide synthase; Provisional
99.39 PRK07008 539
long-chain-fatty-acid--CoA ligase; Validated
99.38 PRK12476 612
putative fatty-acid--CoA ligase; Provisional
99.38 TIGR01217 652
ac_ac_CoA_syn acetoacetyl-CoA synthase. This enzym
99.37 PLN02246 537
4-coumarate--CoA ligase
99.37 PRK13391 511
acyl-CoA synthetase; Provisional
99.37 PRK10946 536
entE enterobactin synthase subunit E; Provisional
99.37 TIGR03205 541
pimA dicarboxylate--CoA ligase PimA. PimA, a membe
99.37 PRK06710 563
long-chain-fatty-acid--CoA ligase; Validated
99.36 TIGR02275 527
DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase. Prot
99.36 PRK05691 4334
peptide synthase; Validated
99.35 PRK07786 542
long-chain-fatty-acid--CoA ligase; Validated
99.34 TIGR01734 502
D-ala-DACP-lig D-alanine--poly(phosphoribitol) lig
99.34 TIGR03443 1389
alpha_am_amid L-aminoadipate-semialdehyde dehydrog
99.33 PRK06018 542
putative acyl-CoA synthetase; Provisional
99.32 PRK12467 3956
peptide synthase; Provisional
99.31 TIGR01923 436
menE O-succinylbenzoate-CoA ligase. This model rep
99.3 PRK04813 503
D-alanine--poly(phosphoribitol) ligase subunit 1;
99.3 PRK05852 534
acyl-CoA synthetase; Validated
99.3 PLN03052 728
acetate--CoA ligase; Provisional
99.29 PRK05691 4334
peptide synthase; Validated
99.29 KOG1177|consensus 596
99.28 PRK07768 545
long-chain-fatty-acid--CoA ligase; Validated
99.26 PRK09192 579
acyl-CoA synthetase; Validated
99.22 PRK05620 576
long-chain-fatty-acid--CoA ligase; Validated
99.2 PRK09029 458
O-succinylbenzoic acid--CoA ligase; Provisional
99.16 PRK06155 542
crotonobetaine/carnitine-CoA ligase; Provisional
99.15 COG1021 542
EntE Peptide arylation enzymes [Secondary metaboli
99.14 PRK08008 517
caiC putative crotonobetaine/carnitine-CoA ligase;
99.13 PRK07824 358
O-succinylbenzoic acid--CoA ligase; Provisional
99.1 PRK08308 414
acyl-CoA synthetase; Validated
99.07 KOG1175|consensus 626
99.07 PRK06164 540
acyl-CoA synthetase; Validated
99.04 TIGR03335 445
F390_ftsA coenzyme F390 synthetase. This enzyme, c
99.02 TIGR02155 422
PA_CoA_ligase phenylacetate-CoA ligase. Phenylacet
99.02 PRK05850 578
acyl-CoA synthetase; Validated
99.02 PRK06178 567
acyl-CoA synthetase; Validated
98.99 PLN02479 567
acetate-CoA ligase
98.93 PRK07868 994
acyl-CoA synthetase; Validated
98.9 PRK07798 533
acyl-CoA synthetase; Validated
98.87 PLN03102 579
acyl-activating enzyme; Provisional
98.8 PRK13388 540
acyl-CoA synthetase; Provisional
98.77 PRK07867 529
acyl-CoA synthetase; Validated
98.76 PRK08162 545
acyl-CoA synthetase; Validated
98.69 COG1541 438
PaaK Coenzyme F390 synthetase [Coenzyme metabolism
98.69 COG1020 642
EntF Non-ribosomal peptide synthetase modules and
98.41 TIGR02372 386
4_coum_CoA_lig 4-coumarate--CoA ligase, photoactiv
98.05 PRK08279 600
long-chain-acyl-CoA synthetase; Validated
98.01 PTZ00297 1452
pantothenate kinase; Provisional
97.75 TIGR02304 430
aden_form_hyp probable adenylate-forming enzyme. M
97.66 KOG1179|consensus 649
92.77 PF04443 365
LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR
92.32
>COG1022 FAA1 Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]
Back Hide alignment and domain information
Probab=99.71 E-value=3.3e-17 Score=109.91 Aligned_cols=77 Identities=42% Similarity=0.739 Sum_probs=71.0
Q ss_pred CCCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCCcceEE
Q psy2847 1 MGLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEIC 78 (83)
Q Consensus 1 ~~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~~Gei~ 78 (83)
+| .++|++++||+++++++...+ .++++.+.|||||++++++..++...+.+++|+|+|++++++.| .|||+
T Consensus 351 lG-gri~~~~sGGa~l~~~~~~f~~~lGi~i~eGYGlTEts~~~~v~~~~~~~~gtvG~p~p~~evKI~d-----~GEil 424 (613)
T COG1022 351 LG-GRIRYALSGGAPLSPELLHFFRSLGIPILEGYGLTETSAVVSVNPPDRFVLGTVGKPLPGIEVKIAD-----DGEIL 424 (613)
T ss_pred hC-CcEEEEEecCCcCCHHHHHHHHHcCCCeEEEecccccccceEEccccCcccCCcCCcCCCceEEEcc-----CceEE
Confidence 35 689999999999999999999 79999999999999999888887778889999999999999999 69999
Q ss_pred EecCC
Q psy2847 79 LKDLI 83 (83)
Q Consensus 79 ~~~~~ 83 (83)
+|||+
T Consensus 425 VRG~~ 429 (613)
T COG1022 425 VRGPN 429 (613)
T ss_pred Eecch
Confidence 99974
>KOG1256|consensus
Back Show alignment and domain information
Probab=99.67 E-value=4e-16 Score=105.05 Aligned_cols=82 Identities=34% Similarity=0.659 Sum_probs=69.1
Q ss_pred CCCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------C
Q psy2847 1 MGLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------E 71 (83)
Q Consensus 1 ~~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~ 71 (83)
|| .++|.+++|+||+++++.+.+ .++.+++.||+||+++.++.....+...+++|.|+|+++++++|.. .
T Consensus 417 LG-g~vr~~~sGaAPls~ev~~F~r~~~g~~v~eGYGlTEts~g~~~~~~~d~~lgsvG~p~p~~~vKL~dvpe~ny~a~ 495 (691)
T KOG1256|consen 417 LG-GNVRLIISGAAPLSPEVLTFFRAALGCRVLEGYGLTETSAGTTLTLPGDNVLGSVGPPVPGNEVKLVDVPEMNYDAD 495 (691)
T ss_pred hc-CceeEEEecCCCCCHHHHHHHHHhcCceeeecccccccCCceEeccCCCCCCCCcCCcccCceEEEechHHhCcCcC
Confidence 35 689999999999999999988 6799999999999996655554444578999999999999997743 3
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
+..|||++||++
T Consensus 496 ~~~GEIcirG~~ 507 (691)
T KOG1256|consen 496 GSKGEICVRGPN 507 (691)
T ss_pred CCcceEEEecch
Confidence 457999999985
>KOG1176|consensus
Back Show alignment and domain information
Probab=99.64 E-value=1.5e-15 Score=100.95 Aligned_cols=82 Identities=30% Similarity=0.486 Sum_probs=71.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
+++++|.+++||+++++++.+++ ++ ..+.+.|||||+++..+.+.... .+.+++|+++++.+.++.++. +
T Consensus 297 ~l~sl~~v~~gga~~~~~~~~~~~~~l~~~~v~q~YGmTE~~~~~~~~~~~~e~k~~svG~~~~g~~~~v~~e~g~~l~~ 376 (537)
T KOG1176|consen 297 DLSSLRSVLSGGAPLSPATLEKVKERLPNVTVIQGYGMTEAGGLITSNDWGPERKPGSVGRLLPGVRVKVLDETGVSLGP 376 (537)
T ss_pred cCCccEEEEecCCCCCHHHHHHHHHhCCCceEEEeeccccccCceeecCCCccCcccccCccccceEEEeeCCCCCCCCC
Confidence 57899999999999999999998 66 88999999999998877776554 488999999999998888875 5
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
++.|||++||++
T Consensus 377 ~~~GEI~vrg~~ 388 (537)
T KOG1176|consen 377 NQTGEICVRGPQ 388 (537)
T ss_pred CCceEEEEECcc
Confidence 789999999974
>PLN02387 long-chain-fatty-acid-CoA ligase family protein
Back Show alignment and domain information
Probab=99.63 E-value=1.2e-15 Score=103.69 Aligned_cols=80 Identities=30% Similarity=0.433 Sum_probs=66.5
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECC-C--------C
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDP-D--------E 71 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~-~--------~ 71 (83)
+++|.+++||+|+++++.+.+ ++.++++.||+||+++.++.....+...+++|+|+++++++++|. + +
T Consensus 420 ~~lr~i~~GGapl~~~~~~~~~~~~g~~v~~~YG~TEt~~~~~~~~~~~~~~gsvG~p~p~~evkivd~~~~~~~~~~~~ 499 (696)
T PLN02387 420 GRIRFMLSGGAPLSGDTQRFINICLGAPIGQGYGLTETCAGATFSEWDDTSVGRVGPPLPCCYVKLVSWEEGGYLISDKP 499 (696)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHcCCCeeEeechhhcccceeecCcccCCCCccCCCCCceEEEEeeccccCcccCCCC
Confidence 589999999999999998776 688999999999998766655444456789999999999999983 2 2
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
+..|||++|||+
T Consensus 500 ~p~GEi~vrGp~ 511 (696)
T PLN02387 500 MPRGEIVIGGPS 511 (696)
T ss_pred CCCceEEeccCc
Confidence 246999999974
>PTZ00342 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.63 E-value=2.5e-15 Score=103.10 Aligned_cols=80 Identities=24% Similarity=0.395 Sum_probs=67.3
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCc-CCcEEEEECCC------CCC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTI-PGTQTKIVDPD------EEG 73 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~-~~~~~~v~d~~------~g~ 73 (83)
++||.+++||+|+++++.+++ ++..+++.||+||+++..+.......+.+++|+|+ ++++++++|.+ ...
T Consensus 461 ~~lr~~~sGGapl~~~~~~~~~~~~g~~i~~gYGlTEt~~~~~~~~~~~~~~gsvG~p~~pg~e~ki~d~~~~~~~~~~~ 540 (746)
T PTZ00342 461 PNLEVILNGGGKLSPKIAEELSVLLNVNYYQGYGLTETTGPIFVQHADDNNTESIGGPISPNTKYKVRTWETYKATDTLP 540 (746)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHhcCCCEEEeeccCcccceeeeccCCCCCcccccCcCCCcEEEEEecccccccCCCCC
Confidence 689999999999999999998 78899999999999876665544445678999998 99999999833 235
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||++|||+
T Consensus 541 ~GEl~vrGp~ 550 (746)
T PTZ00342 541 KGELLIKSDS 550 (746)
T ss_pred ceEEEEecCc
Confidence 7999999974
>PF00501 AMP-binding: AMP-binding enzyme; InterPro: IPR000873 A number of prokaryotic and eukaryotic enzymes, which appear to act via an ATP-dependent covalent binding of AMP to their substrate, share a region of sequence similarity [, , ]
Back Show alignment and domain information
Probab=99.62 E-value=1.3e-15 Score=97.39 Aligned_cols=82 Identities=30% Similarity=0.560 Sum_probs=67.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
+++++|.++++|+++++++.+++ ++. .+++.||+||++.++....... .+.+++|.|+++++++|+|++
T Consensus 275 ~l~~lr~v~~~G~~l~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~ivd~~~~~~~ 354 (417)
T PF00501_consen 275 DLSSLRTVISGGEPLPPDLLRRLRKAFGNAPIINLYGSTETGSIATIRPPEDDIEKPGSVGKPLPGVEVKIVDPNTGEPL 354 (417)
T ss_dssp TGTT-SEEEEESST-CHHHHHHHHHHHTTSEEEEEEEEGGGSSEEEEEETTTHHSSTTSEBEESTTEEEEEECTTTSSBE
T ss_pred ccccccccccccccCChhhccccccccccccceecccccccceeeecccccccccccccccccccccccccccccccccc
Confidence 46789999999999999999998 565 8999999999998876552222 466789999999999999976
Q ss_pred -CCCcceEEEecCC
Q psy2847 71 -EEGNGEICLKDLI 83 (83)
Q Consensus 71 -~g~~Gei~~~~~~ 83 (83)
.++.|||++++|+
T Consensus 355 ~~g~~Gei~i~~~~ 368 (417)
T PF00501_consen 355 PPGEPGEIVIRGPN 368 (417)
T ss_dssp STTSEEEEEEESTT
T ss_pred cccccccccccCCc
Confidence 4788999999974
This region is a Ser/Thr/Gly-rich domain that is further characterised by a conserved Pro-Lys-Gly triplet. The family of enzymes includes luciferase, long chain fatty acid Co-A ligase, acetyl-CoA synthetase and various other closely-related synthetases.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2V7B_A 2Y4O_B 2VSQ_A 3L8C_B 1RY2_A 3KXW_A 3LNV_A 3ETC_B 3A9U_A 3A9V_A ....
>COG0365 Acs Acyl-coenzyme A synthetases/AMP-(fatty) acid ligases [Lipid metabolism]
Back Show alignment and domain information
Probab=99.62 E-value=2.2e-15 Score=99.96 Aligned_cols=79 Identities=24% Similarity=0.378 Sum_probs=66.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++||.+.++|+|++++.++++ +++++.+.||+||++.+.....+ ..+.++.|+|+|++++.++|++ +++
T Consensus 288 dlssLr~~~SaGEPLnpe~~~w~~~~~g~~i~d~~gqTEtg~~~~~~~~-~~~~g~~g~p~pG~~~~vvdd~g~~~~~~~ 366 (528)
T COG0365 288 DLSSLRVLGSAGEPLNPEAFEWFYSALGVWILDIYGQTETGMGFIAGRP-PVKNGSSGLPLPGYAVRRVDDEGNPVPPGV 366 (528)
T ss_pred cchhheeeeccCCCCCHHHHHHHHHHhCCCEeccccccccCccccCCCC-CcCCCCCCCCCCCceeEEECCCCCcCCCCc
Confidence 57899999999999999999999 78999999999999955443323 3355666999999999999986 356
Q ss_pred cceEEEecC
Q psy2847 74 NGEICLKDL 82 (83)
Q Consensus 74 ~Gei~~~~~ 82 (83)
|+|+++.|
T Consensus 367 -G~Lvi~~~ 374 (528)
T COG0365 367 -GELVVRLP 374 (528)
T ss_pred -eEEEEeCC
Confidence 99999976
>PRK06334 long chain fatty acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.61 E-value=6e-15 Score=97.70 Aligned_cols=82 Identities=21% Similarity=0.298 Sum_probs=67.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD------ 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~------ 70 (83)
++++||.+++||+++++++.+++ + +..+++.||+||++.+++...... ....++|+|+++++++++|++
T Consensus 297 ~~~~lr~i~~gG~~l~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~ 376 (539)
T PRK06334 297 CLPSLRFVVIGGDAFKDSLYQEALKTFPHIQLRQGYGTTECSPVITINTVNSPKHESCVGMPIRGMDVLIVSEETKVPVS 376 (539)
T ss_pred ccccccEEEECCccCCHHHHHHHHHHCCCCeEEecccccccCceEEeccCCCCCCCCcCceecCCCEEEEEcCCCCccCC
Confidence 35789999999999999999888 4 678999999999987665543322 345679999999999999864
Q ss_pred CCCcceEEEecCC
Q psy2847 71 EEGNGEICLKDLI 83 (83)
Q Consensus 71 ~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|++
T Consensus 377 ~g~~Gel~v~g~~ 389 (539)
T PRK06334 377 SGETGLVLTRGTS 389 (539)
T ss_pred CCceEEEEEecCc
Confidence 4688999999873
>PRK05677 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.59 E-value=7.9e-15 Score=97.28 Aligned_cols=81 Identities=27% Similarity=0.511 Sum_probs=68.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCCc
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEGN 74 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~~ 74 (83)
++++|.+++||+++++++.++| ++.++++.||+||++.++........+.+++|+|+++++++++|++ .|+.
T Consensus 325 ~~~lr~v~~gG~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g~~ 404 (562)
T PRK05677 325 FSALKLTLSGGMALQLATAERWKEVTGCAICEGYGMTETSPVVSVNPSQAIQVGTIGIPVPSTLCKVIDDDGNELPLGEV 404 (562)
T ss_pred hhhceEEEEcCccCCHHHHHHHHHHcCCCeeccCCccccCcceeecCccCCCCCccCccCCCCEEEEECCCCCCCCCCCC
Confidence 4689999999999999999888 6889999999999987665554433456789999999999999976 4678
Q ss_pred ceEEEecCC
Q psy2847 75 GEICLKDLI 83 (83)
Q Consensus 75 Gei~~~~~~ 83 (83)
|||++++++
T Consensus 405 Gel~v~g~~ 413 (562)
T PRK05677 405 GELCVKGPQ 413 (562)
T ss_pred eEEEEecCc
Confidence 999999873
>PTZ00237 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.59 E-value=5.5e-15 Score=99.85 Aligned_cols=81 Identities=17% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
++++||.++++|+++++++.+++ ++..+++.||+||++..+....... ...+++|+|+++++++++|++ .|
T Consensus 378 ~l~~Lr~i~~~G~~l~~~~~~~~~~~~g~~i~~~yG~TE~~~~~~~~~~~~~~~~~s~G~p~~g~~~~i~d~~g~~~~~g 457 (647)
T PTZ00237 378 DLSNLKEIWCGGEVIEESIPEYIENKLKIKSSRGYGQTEIGITYLYCYGHINIPYNATGVPSIFIKPSILSEDGKELNVN 457 (647)
T ss_pred CcchheEEEecCccCCHHHHHHHHHhcCCCEEeeechHHhChhhhccCCCCCCCCCCCccCcCCceEEEECCCCCCCCCC
Confidence 46799999999999999999888 6888999999999986544322222 334789999999999999976 46
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||++++|
T Consensus 458 e~GEl~v~~p 467 (647)
T PTZ00237 458 EIGEVAFKLP 467 (647)
T ss_pred CceEEEEecc
Confidence 8899999975
>PLN02736 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.58 E-value=6.9e-15 Score=99.24 Aligned_cols=80 Identities=28% Similarity=0.412 Sum_probs=66.3
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC---------C
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD---------E 71 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~---------~ 71 (83)
+++|.+++||+++++++.+++ ++..+++.||+||+++.++.......+.+++|+|+++++++++|.+ +
T Consensus 376 ~~lr~~~~gGa~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~pg~~v~i~d~~~~~~~~~~~~ 455 (651)
T PLN02736 376 GRVRFMSSGASPLSPDVMEFLRICFGGRVLEGYGMTETSCVISGMDEGDNLSGHVGSPNPACEVKLVDVPEMNYTSEDQP 455 (651)
T ss_pred CcEEEEEeCCCCCCHHHHHHHHHHhCCCeEEEechHHhchheeccCCCCCCCCccCCccCceEEEEEEccccCcccCCCC
Confidence 489999999999999999988 6888999999999987665544434566889999999999999832 2
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
++.|||++|||+
T Consensus 456 ~~~GEl~vrgp~ 467 (651)
T PLN02736 456 YPRGEICVRGPI 467 (651)
T ss_pred CCCceEEecCCc
Confidence 246999999974
>COG0318 CaiC Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II [Lipid metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.58 E-value=8.8e-15 Score=97.09 Aligned_cols=79 Identities=41% Similarity=0.649 Sum_probs=66.9
Q ss_pred ceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCCC-----CC
Q psy2847 5 RCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDE-----EG 73 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~~-----g~ 73 (83)
++|.+++||+++++++++++ ++ ..+++.||+||+++.++...... .+.+.+|+|+++++++|+|++. |+
T Consensus 292 ~lr~~~~gg~~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~pg~~v~Ivd~~~~~~~pg~ 371 (534)
T COG0318 292 SLRLVLSGGAPLPPELLERFEERFGPIAILEGYGLTETSPVVTINPPDDLLAKPGSVGRPLPGVEVRIVDPDGGEVLPGE 371 (534)
T ss_pred ceEEEEecCCcCCHHHHHHHHHHhCCCceEEeecccccCceeecCCCchhhhcCCcccccCCCcEEEEEeCCCCccCCCC
Confidence 39999999999999999999 55 47999999999997776665543 3567789999999999999763 56
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||++|||+
T Consensus 372 vGei~irgp~ 381 (534)
T COG0318 372 VGEIWVRGPN 381 (534)
T ss_pred ceEEEEECch
Confidence 8999999985
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.58 E-value=1.2e-14 Score=98.97 Aligned_cols=82 Identities=27% Similarity=0.488 Sum_probs=68.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-CCCcceE
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EEGNGEI 77 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-~g~~Gei 77 (83)
++++||.+++||+++++++.+++ ++..+++.||+||++..+........+.+++|+|+++++++++|++ .++.|||
T Consensus 477 ~~~~lr~i~~gg~~l~~~~~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~~~i~d~~~~~~~Gel 556 (718)
T PRK08043 477 DFARLRYVVAGAEKLQESTKQLWQDKFGLRILEGYGVTECAPVVSINVPMAAKPGTVGRILPGMDARLLSVPGIEQGGRL 556 (718)
T ss_pred cccceEEEEEeCccCCHHHHHHHHHHcCCCeecccCcccccceEEecCCcccCCCCCCCcCCCCeeEEecCCCCCCceEE
Confidence 46789999999999999999888 7889999999999987655443333456899999999999999876 4567999
Q ss_pred EEecCC
Q psy2847 78 CLKDLI 83 (83)
Q Consensus 78 ~~~~~~ 83 (83)
+++|++
T Consensus 557 ~v~g~~ 562 (718)
T PRK08043 557 QLKGPN 562 (718)
T ss_pred EEecCC
Confidence 999974
>PRK07788 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.57 E-value=1e-14 Score=96.39 Aligned_cols=81 Identities=22% Similarity=0.271 Sum_probs=66.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+.....+. ...+++|+|+++++++++|++ .|+
T Consensus 322 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~ 401 (549)
T PRK07788 322 TSSLKIIFVSGSALSPELATRALEAFGPVLYNLYGSTEVAFATIATPEDLAEAPGTVGRPPKGVTVKILDENGNEVPRGV 401 (549)
T ss_pred CCceeEEEEeCCCCCHHHHHHHHHHhCccceeccCcchhchhhccChhhhhhcCCCcccCCCCcEEEEECCCcCCCCCCC
Confidence 5789999999999999999988 6788999999999875544332221 345789999999999999976 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++|+.
T Consensus 402 ~Gel~v~g~~ 411 (549)
T PRK07788 402 VGRIFVGNGF 411 (549)
T ss_pred eEEEEEeCCC
Confidence 8999999863
>PTZ00216 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.57 E-value=7.4e-15 Score=99.94 Aligned_cols=79 Identities=24% Similarity=0.490 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-------CCC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-------EEG 73 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-------~g~ 73 (83)
+++|.+++||+++++++.+++ ++ .+++.||+||+++..+.........+++|+|+++++++++|++ +++
T Consensus 428 ~~lr~i~~GGa~l~~~~~~~~~~~~~-~l~~~YG~TEt~~~~~~~~~~~~~~~svG~p~~g~evkI~d~~~~~~~~~~~~ 506 (700)
T PTZ00216 428 GRVRAMLSGGGPLSAATQEFVNVVFG-MVIQGWGLTETVCCGGIQRTGDLEPNAVGQLLKGVEMKLLDTEEYKHTDTPEP 506 (700)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHhh-hHhhccCcccccccccccCCCCCCCCCcCCcCCCeEEEEeechhhccCCCCCC
Confidence 579999999999999998776 56 8999999999976655444333456899999999999999864 245
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||+
T Consensus 507 ~GEL~vrG~~ 516 (700)
T PTZ00216 507 RGEILLRGPF 516 (700)
T ss_pred CceEEEcCCc
Confidence 7999999974
>PRK12492 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=2.7e-14 Score=94.80 Aligned_cols=82 Identities=24% Similarity=0.452 Sum_probs=67.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++++.++| ++.++++.||+||++.++....... .+.+++|+|+++++++++|++ .+
T Consensus 331 ~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~v~ivd~~~~~~~~g 410 (562)
T PRK12492 331 DFSALKLTNSGGTALVKATAERWEQLTGCTIVEGYGLTETSPVASTNPYGELARLGTVGIPVPGTALKVIDDDGNELPLG 410 (562)
T ss_pred cccceeEEEeccccCCHHHHHHHHHHhCCceeeccCccccCceeeecCCcccccCCccceecCCCEEEEECCCCCCCCCC
Confidence 35789999999999999999888 7889999999999987665443322 345789999999999999976 46
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++|+.
T Consensus 411 ~~Gel~v~g~~ 421 (562)
T PRK12492 411 ERGELCIKGPQ 421 (562)
T ss_pred CceEEEEeCCc
Confidence 78999999863
>PRK13382 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.56 E-value=2e-14 Score=95.00 Aligned_cols=81 Identities=20% Similarity=0.283 Sum_probs=66.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||++++++++++| ++..+++.||+||++.++...... ....+++|+|+++++++++|++ .|+
T Consensus 311 ~~~lr~i~~gG~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~~~g~ 390 (537)
T PRK13382 311 GRSLRFAAASGSRMRPDVVIAFMDQFGDVIYNNYNATEAGMIATATPADLRAAPDTAGRPAEGTEIRILDQDFREVPTGE 390 (537)
T ss_pred ccceeEEEEcCCCCCHHHHHHHHHHcCCcEEecccccccCcceecChhHhccCCCCccccCcCcEEEEECCCCCCCCCCC
Confidence 3579999999999999999988 677899999999998765543322 2446789999999999999986 367
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||++++++
T Consensus 391 ~GEl~v~g~~ 400 (537)
T PRK13382 391 VGTIFVRNDT 400 (537)
T ss_pred eeEEEEEcCC
Confidence 8999999873
>PRK07529 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.56 E-value=2.1e-14 Score=96.66 Aligned_cols=82 Identities=27% Similarity=0.511 Sum_probs=67.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEE--CCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIV--DPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~--d~~----- 70 (83)
+++++|.+++||+++++++.+++ ++.++++.||+||++.++.....+. .+.+++|+|+++++++++ |++
T Consensus 331 ~~~slr~v~~gg~~l~~~l~~~~~~~~g~~l~~~YG~TE~~~~~~~~~~~~~~~~~svG~~~p~~~v~i~~~d~~g~~~~ 410 (632)
T PRK07529 331 DISSLRYALCGAAPLPVEVFRRFEAATGVRIVEGYGLTEATCVSSVNPPDGERRIGSVGLRLPYQRVRVVILDDAGRYLR 410 (632)
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHhCCcEeeeecccccCcccccCCccccccCCCcccccCCceEEEEEcCCCCcccc
Confidence 46789999999999999999988 7889999999999987665554332 467889999999998885 443
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.|+.|||+++||+
T Consensus 411 ~~~~g~~Gel~v~gp~ 426 (632)
T PRK07529 411 DCAVDEVGVLCIAGPN 426 (632)
T ss_pred cCCCCCceEEEEECCC
Confidence 3678999999874
>PLN02614 long-chain acyl-CoA synthetase
Back Show alignment and domain information
Probab=99.55 E-value=2.3e-14 Score=97.17 Aligned_cols=80 Identities=26% Similarity=0.560 Sum_probs=62.3
Q ss_pred CceEEEEEecCCCCHHHHHHh--c-CCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEEC-CC-------C
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--L-DIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVD-PD-------E 71 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~-~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d-~~-------~ 71 (83)
+++|.+++||+++++++.+.+ + +..+++.||+||++..+......+ .+.+++|+|+++++++++| ++ .
T Consensus 386 ~~lr~~~~Gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~pg~evki~d~~~~~~~~~~~ 465 (666)
T PLN02614 386 GNVRIILSGAAPLASHVESFLRVVACCHVLQGYGLTESCAGTFVSLPDELDMLGTVGPPVPNVDIRLESVPEMEYDALAS 465 (666)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHhcCCCEEeeCchHhhhhheeeeccccCCcCCcccCcCCceEEEEeeecccCcccCCC
Confidence 689999999999998764443 4 578999999999876554433322 3568999999999999997 22 3
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
++.|||++|||+
T Consensus 466 g~~GEl~vrGp~ 477 (666)
T PLN02614 466 TPRGEICIRGKT 477 (666)
T ss_pred CCCceEEEcCCc
Confidence 578999999984
>PRK06060 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.55 E-value=3.5e-14 Score=96.51 Aligned_cols=81 Identities=21% Similarity=0.418 Sum_probs=66.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||+++++++.+++ + +.++++.||+||++..+........+.+++|+|+++++++++|++ .|+
T Consensus 259 ~~slr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~iG~p~~~~~v~i~d~~g~~~~~g~ 338 (705)
T PRK06060 259 FRSLRCVVSAGEALELGLAERLMEFFGGIPILDGIGSTEVGQTFVSNRVDEWRLGTLGRVLPPYEIRVVAPDGTTAGPGV 338 (705)
T ss_pred ccceeEEEEecCcCCHHHHHHHHHHcCCCceEeeeeccccCceEEeccCCCCCcCcccccCCCcEEEEECCCCCCCCCCC
Confidence 5689999999999999999888 4 578999999999976544333333456789999999999999976 467
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++|++
T Consensus 339 ~GEl~i~g~~ 348 (705)
T PRK06060 339 EGDLWVRGPA 348 (705)
T ss_pred ceEEEEccch
Confidence 8999999863
>PRK13295 cyclohexanecarboxylate-CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.54 E-value=6.5e-14 Score=92.64 Aligned_cols=81 Identities=22% Similarity=0.312 Sum_probs=66.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
++++|.+++||+++++++.+++ ++.++++.||+||++..+....... ....++|+|+++++++++|++ .|
T Consensus 311 ~~~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~g 390 (547)
T PRK13295 311 VSSLRTFLCAGAPIPGALVERARAALGAKIVSAWGMTENGAVTLTKLDDPDERASTTDGCPLPGVEVRVVDADGAPLPAG 390 (547)
T ss_pred cccceEEEEecCCCCHHHHHHHHHHhCCCeEEeccCCCCCCeeeccCCCcchhccCccccccCCcEEEEECCCCCCCCCC
Confidence 5689999999999999999988 7889999999999986654433221 234678999999999999976 36
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++++.
T Consensus 391 ~~Gel~v~g~~ 401 (547)
T PRK13295 391 QIGRLQVRGCS 401 (547)
T ss_pred CCCeEEEEcCc
Confidence 78999999863
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Back Show alignment and domain information
Probab=99.54 E-value=4.9e-14 Score=99.09 Aligned_cols=82 Identities=29% Similarity=0.481 Sum_probs=67.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC----------CcccCceecCcCCcEEEEEC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD----------DFKLDGVGRTIPGTQTKIVD 68 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~----------~~~~~~~g~p~~~~~~~v~d 68 (83)
+++++|.+++||+++++++.+++ ++.++++.||+||++..++....+ ..+.+++|+|+++++++++|
T Consensus 896 ~~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d 975 (1146)
T PRK08633 896 MFASLRLVVAGAEKLKPEVADAFEEKFGIRILEGYGATETSPVASVNLPDVLAADFKRQTGSKEGSVGMPLPGVAVRIVD 975 (1146)
T ss_pred cCCCeeeEEEcCCcCCHHHHHHHHHHhCCCeecccccccCcceEEEecCcccccccccccCCCCCCccccCCCCEEEEEc
Confidence 36789999999999999999988 688999999999998766543221 12457899999999999999
Q ss_pred CC------CCCcceEEEecCC
Q psy2847 69 PD------EEGNGEICLKDLI 83 (83)
Q Consensus 69 ~~------~g~~Gei~~~~~~ 83 (83)
++ .|+.|||+++|++
T Consensus 976 ~~~~~~~~~g~~Gel~v~g~~ 996 (1146)
T PRK08633 976 PETFEELPPGEDGLILIGGPQ 996 (1146)
T ss_pred CCCCccCCCCCceEEEEcCCC
Confidence 64 4788999999874
>KOG1180|consensus
Back Show alignment and domain information
Probab=99.53 E-value=2.2e-14 Score=94.90 Aligned_cols=80 Identities=30% Similarity=0.493 Sum_probs=70.0
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-C-----C--
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-E-----E-- 72 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-~-----g-- 72 (83)
-+||++++||+|+++++.+.+ +..++.+.||.||+...++....++...+.+|.|++.++++++|.. . +
T Consensus 402 G~lR~~LsGGapLS~dtQrF~nic~C~Pv~qGYGLTEtca~~tv~e~~d~~~g~vG~pl~c~eiKLvdw~EgGY~~~~~P 481 (678)
T KOG1180|consen 402 GNLRYILSGGAPLSPDTQRFMNICFCCPVLQGYGLTETCAAATVLEPEDFSTGRVGAPLPCCEIKLVDWEEGGYFAKNKP 481 (678)
T ss_pred CceEEEEeCCCCCCHHHHHHHHHhccccccccccccchhcccEecChhhcccccccCCccceEEEEEEhhhcCccCCCCC
Confidence 479999999999999998888 7889999999999988888777777777899999999999999954 1 2
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
.+|||+++|++
T Consensus 482 PrGEI~i~G~~ 492 (678)
T KOG1180|consen 482 PRGEILIGGPN 492 (678)
T ss_pred CCceEEecCCc
Confidence 48999999975
>PRK12582 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=4.4e-14 Score=94.95 Aligned_cols=79 Identities=23% Similarity=0.297 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCCHHHHHHh--c-------CCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--L-------DIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~-------~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~ 73 (83)
+++||.+++||+++++++.+++ . +..+++.||+||++.++........+.+++|+|++++++++++ .|+
T Consensus 345 ~~slr~i~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~~--~G~ 422 (624)
T PRK12582 345 FKNLRLMAYGGATLSDDLYERMQALAVRTTGHRIPFYTGYGATETAPTTTGTHWDTERVGLIGLPLPGVELKLAP--VGD 422 (624)
T ss_pred hhheeEEEecCCCCCHHHHHHHHHHHHhhcCCCceEEeccccccccceeecccCCCCCCCCCCcCCCCcEEEEcc--CCC
Confidence 4689999999999999999887 2 3579999999999766543322234567899999999999985 467
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++|++
T Consensus 423 ~GEl~vrg~~ 432 (624)
T PRK12582 423 KYEVRVKGPN 432 (624)
T ss_pred ceEEEEECCc
Confidence 8999999974
>PRK04319 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.53 E-value=8e-14 Score=92.67 Aligned_cols=80 Identities=26% Similarity=0.456 Sum_probs=66.4
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.++++|+++++++.+++ ++.++++.||+||++..+...... ....+++|+|.++++++++|++ .|
T Consensus 321 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~~~~~~g 400 (570)
T PRK04319 321 DLSSLRHILSVGEPLNPEVVRWGMKVFGLPIHDNWWMTETGGIMIANYPAMDIKPGSMGKPLPGIEAAIVDDQGNELPPN 400 (570)
T ss_pred CcccceEEEEcccCCCHHHHHHHHHHhCCCeEeceeecccCCEEEecCCCCCCCCCcCcCCCCCCEEEEECCCCCCCCCC
Confidence 35789999999999999999888 788899999999998765433222 2456789999999999999976 47
Q ss_pred CcceEEEec
Q psy2847 73 GNGEICLKD 81 (83)
Q Consensus 73 ~~Gei~~~~ 81 (83)
+.|||++++
T Consensus 401 ~~Gel~i~~ 409 (570)
T PRK04319 401 RMGNLAIKK 409 (570)
T ss_pred CceEEEEcC
Confidence 889999986
>PRK08180 feruloyl-CoA synthase; Reviewed
Back Show alignment and domain information
Probab=99.52 E-value=8.7e-14 Score=93.38 Aligned_cols=79 Identities=23% Similarity=0.306 Sum_probs=64.5
Q ss_pred CCceEEEEEecCCCCHHHHHHh-------cC--CeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF-------LD--IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~-------~~--~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~ 73 (83)
+++||.+++||+++++++.+++ ++ ..+++.||+||++.++........+.+++|+|+++++++++|+ +.
T Consensus 333 ~~~lr~v~~gGa~l~~~~~~~~~~~~~~~~g~~~~l~~~YG~TE~~~~~~~~~~~~~~~~svG~p~pg~~v~i~d~--~~ 410 (614)
T PRK08180 333 FSRLKLLFYAGAALSQDVWDRLDRVAEATCGERIRMMTGLGMTETAPSATFTTGPLSRAGNIGLPAPGCEVKLVPV--GG 410 (614)
T ss_pred ccceeEEEEccCCCCHHHHHHHHHHHHhhcCCCceeeeeecccccCCceEecccccCCCCcccCccCCcEEEEecC--CC
Confidence 5789999999999999998876 12 5789999999998766554333356689999999999999985 45
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++||+
T Consensus 411 ~GEi~vrg~~ 420 (614)
T PRK08180 411 KLEVRVKGPN 420 (614)
T ss_pred CcEEEEecCc
Confidence 7999999874
>PRK13383 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.52 E-value=8.5e-14 Score=91.49 Aligned_cols=81 Identities=20% Similarity=0.327 Sum_probs=65.9
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+...... ....+++|+|+++++++++|++ .++
T Consensus 291 ~~~lr~i~~gG~~l~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 370 (516)
T PRK13383 291 LPQLRVVMSSGDRLDPTLGQRFMDTYGDILYNGYGSTEVGIGALATPADLRDAPETVGKPVAGCPVRILDRNNRPVGPRV 370 (516)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHcCchhhhcccccccccceeccccccccCCCcccCCCCCcEEEEECCCCCCCCCCC
Confidence 4689999999999999999988 788899999999997655433322 1345789999999999999865 367
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++|+.
T Consensus 371 ~Gel~v~g~~ 380 (516)
T PRK13383 371 TGRIFVGGEL 380 (516)
T ss_pred ceEEEEecCc
Confidence 8999999863
>PRK08314 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.52 E-value=6.7e-14 Score=92.26 Aligned_cols=81 Identities=23% Similarity=0.383 Sum_probs=67.3
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~ 73 (83)
++++|.+++||+++++++.+++ ++.++++.||+||++..+.....+.....++|+|+++++++++|++ .++
T Consensus 304 ~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~~g~ 383 (546)
T PRK08314 304 LSSLRYIGGGGAAMPEAVAERLKELTGLDYVEGYGLTETMAQTHSNPPDRPKLQCLGIPTFGVDARVIDPETLEELPPGE 383 (546)
T ss_pred chhhheeeeccccCCHHHHHHHHHHcCCcEEecccccccccceecCCCcCCCCCccCcccCCeEEEEEeCCCCcCCCCCC
Confidence 5689999999999999999988 6888999999999987665544333455789999999999999854 367
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||++++++
T Consensus 384 ~Gel~v~g~~ 393 (546)
T PRK08314 384 VGEIVVHGPQ 393 (546)
T ss_pred ceEEEEECCc
Confidence 8999999863
>TIGR02316 propion_prpE propionate--CoA ligase
Back Show alignment and domain information
Probab=99.52 E-value=1e-13 Score=93.21 Aligned_cols=81 Identities=12% Similarity=0.186 Sum_probs=65.4
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC----CcccCceecCcCCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD----DFKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~----~~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
++++||.+++||+++++++.+++ ++..+++.||+||++..+...... ..+.+++|+|+++++++++|++
T Consensus 352 ~l~~lr~~~~gGe~l~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~~g~~ 431 (628)
T TIGR02316 352 DLSSLHWLFLAGEPLDEPTAHWITDGLGKPVIDNYWQTETGWPVLAIMPGLDLKPVKLGSPGLPMYGYHLRVLDEATGRP 431 (628)
T ss_pred CccceeEEEEecCCCCHHHHHHHHHHhCCCEEecccccccCceeecCCCCCCcCCCCCCCcccCcCCceEEEEECCCCCC
Confidence 46799999999999999998887 688899999999998543322111 1345788999999999999973
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
.++.|||++++|
T Consensus 432 ~~~g~~Gel~v~gp 445 (628)
T TIGR02316 432 CGPNEKGVLTVVPP 445 (628)
T ss_pred CCCCCcEEEEEecC
Confidence 367899999987
This family contains one of three readily separable clades of proteins in the group of acetate and propionate--CoA ligases. Characterized members of this family act on propionate. From propionyl-CoA, there is a cyclic degradation pathway: it is ligated by PrpC to the TCA cycle intermediate oxaloacetate, acted upon further by PrpD and an aconitase, then cleaved by PrpB to pyruvate and the TCA cycle intermediate succinate.
>PRK06839 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.51 E-value=1.5e-13 Score=89.57 Aligned_cols=82 Identities=22% Similarity=0.323 Sum_probs=67.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++++.+++ .+.++.+.||+||++..+....... .+.+++|+|+++++++++|++ .|
T Consensus 262 ~~~~lr~~~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~p~~~~~~~i~d~~~~~~~~g 341 (496)
T PRK06839 262 NLQSVRWFYNGGAPCPEELMREFIDRGFLFGQGFGMTETSPTVFMLSEEDARRKVGSIGKPVLFCDYELIDENKNKVEVG 341 (496)
T ss_pred CCcccceEEECCCCCCHHHHHHHHHhCCeeEeeccCCCCCcceEecccccccccCCCCcccCCCceEEEECCCcCCCCCC
Confidence 35789999999999999999988 6788999999999986554333222 456789999999999999976 47
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||++++++
T Consensus 342 ~~Gel~v~~~~ 352 (496)
T PRK06839 342 EVGELLIRGPN 352 (496)
T ss_pred CceEEEEECCC
Confidence 88999999874
>PLN02860 o-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.51 E-value=1.2e-13 Score=91.80 Aligned_cols=81 Identities=21% Similarity=0.261 Sum_probs=64.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC-----------------------cccCce
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD-----------------------FKLDGV 55 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~-----------------------~~~~~~ 55 (83)
++++|.+++||+++++++.+++ + +..+++.||+||++..+....... ....++
T Consensus 287 ~~~lr~~~~gG~~l~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 366 (563)
T PLN02860 287 FPSVRKILNGGGSLSSRLLPDAKKLFPNAKLFSAYGMTEACSSLTFMTLHDPTLESPKQTLQTVNQTKSSSVHQPQGVCV 366 (563)
T ss_pred ccceeEEEeCCCcCCHHHHHHHHHhcCCCceecCCCccccCcccccccccccccccchhhhhhhcccccccccccCCccc
Confidence 5689999999999999999888 4 688999999999875443221100 112368
Q ss_pred ecCcCCcEEEEECCCCCCcceEEEecCC
Q psy2847 56 GRTIPGTQTKIVDPDEEGNGEICLKDLI 83 (83)
Q Consensus 56 g~p~~~~~~~v~d~~~g~~Gei~~~~~~ 83 (83)
|+|+++++++++++++++.|||+++|++
T Consensus 367 G~p~~~~~v~i~~~~~g~~Gel~v~g~~ 394 (563)
T PLN02860 367 GKPAPHVELKIGLDESSRVGRILTRGPH 394 (563)
T ss_pred CCccCCcEEEEecCCCCceeEEEEecCc
Confidence 9999999999999888899999999874
>PLN03051 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=99.50 E-value=1.3e-13 Score=90.58 Aligned_cols=81 Identities=17% Similarity=0.150 Sum_probs=62.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c--CCeEecccCccccccceeecCC-CCcccCceecCcCCcEEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L--DIAICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~--~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
++++||.+++||++++++..+++ + +..+++.||+||++..+..... ...+.+++|+|.++++++|+|++
T Consensus 234 ~~~~Lr~i~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~p~~~~~~~ivd~~g~~~~ 313 (499)
T PLN03051 234 DWSKLRVFASTGEASAVDDVLWLSSVRGYYKPVIEYCGGTELASGYISSTLLQPQAPGAFSTASLGTRFVLLNDNGVPYP 313 (499)
T ss_pred CchhheEEEecCCCCCHHHHHHHHHhccccceeEeeeccccccceeecccccCCCCCccccCCCCCceEEEECCCCCCCC
Confidence 45789999999999999888766 2 2679999999998654332221 22345789999999999999976
Q ss_pred CC--CcceEEEecC
Q psy2847 71 EE--GNGEICLKDL 82 (83)
Q Consensus 71 ~g--~~Gei~~~~~ 82 (83)
.| +.|||+++||
T Consensus 314 ~g~~~~Gel~v~g~ 327 (499)
T PLN03051 314 DDQPCVGEVALAPP 327 (499)
T ss_pred CCCCcceEEEEecC
Confidence 23 4799999987
>TIGR03208 cyc_hxne_CoA_lg cyclohexanecarboxylate-CoA ligase
Back Show alignment and domain information
Probab=99.50 E-value=1.7e-13 Score=90.47 Aligned_cols=82 Identities=21% Similarity=0.307 Sum_probs=66.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
.++++|.+++||+++++++.+++ ++..+++.||+||++.+........ ....++|+|+++++++++|++ .
T Consensus 308 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~~~~~~~~~~ 387 (538)
T TIGR03208 308 PVPSLFTFLCAGAPIPGILVERAWELLGALIVSAWGMTENGAVTVTEPDDALEKASTTDGRPLPGVEVKVIDANGAKLSQ 387 (538)
T ss_pred CCCcceEEEEcCCCCCHHHHHHHHHHcCCeEEeeeccCcCCCccccCcccchhhccCcccccCCCCEEEEECCCCCCCcC
Confidence 35789999999999999999887 7888999999999976654433221 223578999999999999976 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++++.
T Consensus 388 g~~Gel~v~g~~ 399 (538)
T TIGR03208 388 GETGRLLVRGCS 399 (538)
T ss_pred CCCcEEEEecCc
Confidence 678999999863
Members of this protein family are cyclohexanecarboxylate-CoA ligase. This enzyme prepares the aliphatic ring compound, cyclohexanecarboxylate, for dehydrogenation and then degradation by a pathway also used in benzoyl-CoA degradation in Rhodopseudomonas palustris.
>PLN02574 4-coumarate--CoA ligase-like
Back Show alignment and domain information
Probab=99.50 E-value=1.8e-13 Score=90.90 Aligned_cols=81 Identities=26% Similarity=0.325 Sum_probs=65.3
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCC--CCcccCceecCcCCcEEEEECCC------
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAP--DDFKLDGVGRTIPGTQTKIVDPD------ 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~g~p~~~~~~~v~d~~------ 70 (83)
++++|.+++||+++++++++++ + +..+++.||+||++.+...... ...+.+++|+|.++++++|+|++
T Consensus 318 ~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~g~~~~ 397 (560)
T PLN02574 318 LKSLKQVSCGAAPLSGKFIQDFVQTLPHVDFIQGYGMTESTAVGTRGFNTEKLSKYSSVGLLAPNMQAKVVDWSTGCLLP 397 (560)
T ss_pred cccceEEEEecccCCHHHHHHHHHHCCCCcEEecccccccCceeecCCCccccCCCCceeeeCCCcEEEEEeCCCCcCCC
Confidence 5789999999999999999887 4 6889999999999765432211 11456789999999999999953
Q ss_pred CCCcceEEEecCC
Q psy2847 71 EEGNGEICLKDLI 83 (83)
Q Consensus 71 ~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|++
T Consensus 398 ~g~~Gei~v~g~~ 410 (560)
T PLN02574 398 PGNCGELWIQGPG 410 (560)
T ss_pred CCCCeEEEEECcc
Confidence 4778999999864
>PRK07656 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.49 E-value=2.1e-13 Score=89.03 Aligned_cols=81 Identities=28% Similarity=0.462 Sum_probs=67.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCC-c--ccCceecCcCCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDD-F--KLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~-~--~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++++|.+++||+++++++.+++ ++. .+++.||+||++.++..+.... . ..+++|+|+++++++++|++
T Consensus 279 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~ 358 (513)
T PRK07656 279 DLSSLRLAVTGAASMPVALLERFESELGVDIVLTGYGLSEASGVTTFNRLDDDRKTVAGTIGTAIAGVENKIVNELGEEV 358 (513)
T ss_pred CccceeeEEecCCCCCHHHHHHHHHHcCCCceEeEEccccCCCceeecCccccccccCCCccccCCCcEEEEECCCCCCC
Confidence 35789999999999999999888 677 8999999999987776655432 2 25789999999999999876
Q ss_pred -CCCcceEEEecC
Q psy2847 71 -EEGNGEICLKDL 82 (83)
Q Consensus 71 -~g~~Gei~~~~~ 82 (83)
.|+.|||+++++
T Consensus 359 ~~g~~Gel~v~~~ 371 (513)
T PRK07656 359 PVGEVGELLVRGP 371 (513)
T ss_pred CCCCceEEEEEcc
Confidence 367899999986
>PLN02861 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=99.49 E-value=1.1e-13 Score=93.79 Aligned_cols=80 Identities=23% Similarity=0.442 Sum_probs=61.3
Q ss_pred CceEEEEEecCCCCHHHHHHh--cC-CeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECC-C-------C
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LD-IAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDP-D-------E 71 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~-~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~-~-------~ 71 (83)
.++|.+++||+|+++++.+.+ ++ ..+++.||+||+++.++...... .+.+++|+|+++++++++|. + .
T Consensus 383 ~~lr~~~~Ggapl~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~p~~ev~i~d~~~~g~~~~~~ 462 (660)
T PLN02861 383 GRVRLLLSGAAPLPRHVEEFLRVTSCSVLSQGYGLTESCGGCFTSIANVFSMVGTVGVPMTTIEARLESVPEMGYDALSD 462 (660)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHcCCCeeEecchhhhhhceeecccccCCCCCCccCccCceEEEEEEccccCcccCCC
Confidence 579999999999999975544 45 46999999999976554332222 35689999999999999972 1 2
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
++.|||++|||+
T Consensus 463 ~~~GEi~vrGp~ 474 (660)
T PLN02861 463 VPRGEICLRGNT 474 (660)
T ss_pred CCceeEEEcCCc
Confidence 357999999974
>PRK10524 prpE propionyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.49 E-value=1.5e-13 Score=92.25 Aligned_cols=81 Identities=11% Similarity=0.235 Sum_probs=65.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCcccccccee-ecCC-C--CcccCceecCcCCcEEEEECC-C---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHT-VSAP-D--DFKLDGVGRTIPGTQTKIVDP-D--- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~-~~~~-~--~~~~~~~g~p~~~~~~~v~d~-~--- 70 (83)
++++||.++++|+++++++.+++ ++.++++.||+||++..+. .... . ..+.+++|+|+++++++++|+ +
T Consensus 353 ~l~~lr~i~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~~g~~ 432 (629)
T PRK10524 353 DLSSLRALFLAGEPLDEPTASWISEALGVPVIDNYWQTETGWPILAIARGVEDRPTRLGSPGVPMYGYNVKLLNEVTGEP 432 (629)
T ss_pred ChhheeEEEEeCCCCCHHHHHHHHHhcCCCeEeccccccccchhhcCCCCcccCcCCCCCcccCcCCceEEEEeCCCCCC
Confidence 46789999999999999998887 7888999999999974332 2211 1 134578999999999999998 4
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
.|+.|||++++|
T Consensus 433 ~~~g~~Gel~i~gp 446 (629)
T PRK10524 433 CGPNEKGVLVIEGP 446 (629)
T ss_pred CCCCCcEEEEEcCC
Confidence 467899999986
>PRK09274 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.49 E-value=1.4e-13 Score=90.99 Aligned_cols=82 Identities=23% Similarity=0.332 Sum_probs=64.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c--CCeEecccCccccccceeecCCC---------C-cccCceecCcCCcEEEE
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L--DIAICEVFGMSECAGAHTVSAPD---------D-FKLDGVGRTIPGTQTKI 66 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~--~~~~~~~yG~tE~~~~~~~~~~~---------~-~~~~~~g~p~~~~~~~v 66 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++.++...... . ....++|+|++++++++
T Consensus 286 ~~~~lr~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i 365 (552)
T PRK09274 286 KLPSLRRVISAGAPVPIAVIERFRAMLPPDAEILTPYGATEALPISSIESREILFATRAATDNGAGICVGRPVDGVEVRI 365 (552)
T ss_pred CCchhhEEEecCCcCCHHHHHHHHHHcCCCceEEccccccccceeEeecchhhhccccccccCCCCcccCccCCCceEEE
Confidence 46789999999999999999988 5 46899999999998765433211 0 12236899999999999
Q ss_pred ECCC--------------CCCcceEEEecCC
Q psy2847 67 VDPD--------------EEGNGEICLKDLI 83 (83)
Q Consensus 67 ~d~~--------------~g~~Gei~~~~~~ 83 (83)
+|++ .|+.|||+++||+
T Consensus 366 vd~~~~~~~~~~~~~~~~~g~~Gel~v~g~~ 396 (552)
T PRK09274 366 IAISDAPIPEWDDALRLATGEIGEIVVAGPM 396 (552)
T ss_pred EeccccccccccccccCCCCCeeEEEEecCc
Confidence 9841 3678999999874
>TIGR02188 Ac_CoA_lig_AcsA acetate--CoA ligase
Back Show alignment and domain information
Probab=99.49 E-value=2.8e-13 Score=90.97 Aligned_cols=81 Identities=19% Similarity=0.246 Sum_probs=65.8
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC---CeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD---IAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~---~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++||.++++|+++++++.+++ ++ .++++.||+||+++.+...... ..+.+++|+|+++++++++|++
T Consensus 356 ~l~~lr~i~~~G~~l~~~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~~~~~G~p~~g~~~~i~d~~g~~ 435 (625)
T TIGR02188 356 DLSSLRLLGSVGEPINPEAWMWYYKVVGKERCPIVDTWWQTETGGIMITPLPGATPTKPGSATLPFFGIEPAVVDEEGNP 435 (625)
T ss_pred CccceeEEEEecCCCCHHHHHHHHHHcCCCCCceEecccccccCCceeecCCCCCCcCCCcccCCcCCceEEEECCCCCC
Confidence 46789999999999999998877 33 6799999999998765433221 2456889999999999999965
Q ss_pred ---CCCcceEEEecC
Q psy2847 71 ---EEGNGEICLKDL 82 (83)
Q Consensus 71 ---~g~~Gei~~~~~ 82 (83)
.++.|||++++|
T Consensus 436 ~~~~g~~GeL~v~~p 450 (625)
T TIGR02188 436 VEGPGEGGYLVIKQP 450 (625)
T ss_pred CCCCCCeEEEEEccC
Confidence 367899999984
This model describes acetate-CoA ligase (EC 6.2.1.1), also called acetyl-CoA synthetase and acetyl-activating enzyme. It catalyzes the reaction ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA and belongs to the family of AMP-binding enzymes described by Pfam model pfam00501.
>PRK00174 acetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=2.8e-13 Score=91.16 Aligned_cols=81 Identities=23% Similarity=0.387 Sum_probs=65.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC---CeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD---IAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~---~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++||.++++|+++++++.+++ ++ .++++.||+||++......... ..+.+++|+|+++++++++|++
T Consensus 365 ~~~~lr~i~~~Ge~l~~~~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~vG~p~~g~~~~i~d~~g~~ 444 (637)
T PRK00174 365 DLSSLRLLGSVGEPINPEAWEWYYKVVGGERCPIVDTWWQTETGGIMITPLPGATPLKPGSATRPLPGIQPAVVDEEGNP 444 (637)
T ss_pred CccceeEEEEeCCCCCHHHHHHHHHHhCCCCCceEecccccccCCceEecCCCCCCcCCCcccCCCCCceEEEECCCCCC
Confidence 46789999999999999998877 43 6799999999998765433221 2346789999999999999976
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
.++.|||++++|
T Consensus 445 ~~~g~~Gel~v~g~ 458 (637)
T PRK00174 445 LEGGEGGNLVIKDP 458 (637)
T ss_pred CCCCCcEEEEEcCC
Confidence 478899999984
>PRK05851 long-chain-fatty-acid--[acyl-carrier-protein] ligase; Validated
Back Show alignment and domain information
Probab=99.48 E-value=1.1e-13 Score=91.29 Aligned_cols=82 Identities=27% Similarity=0.420 Sum_probs=63.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh------cCC---eEecccCccccccceeecCCC---------------CcccCceec
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF------LDI---AICEVFGMSECAGAHTVSAPD---------------DFKLDGVGR 57 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~------~~~---~~~~~yG~tE~~~~~~~~~~~---------------~~~~~~~g~ 57 (83)
+++++|.+++||+++++++.++| ++. .+++.||+||++..+...... ..+.+++|+
T Consensus 270 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vG~ 349 (525)
T PRK05851 270 DLGALRVALNGGEPVDCDGFERFATAMAPFGFDAGAAAPSYGLAESTCAVTVPVPGIGLRVDEVTTDDGSGARRHAVLGN 349 (525)
T ss_pred CHHHhheeEeccccCCHHHHHHHHHHHhhcCCChhhcccccchhhhceEEEecCCCCCceeeeeccccCcccceeeeecC
Confidence 35689999999999999988876 233 489999999997655432211 123467999
Q ss_pred CcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 58 TIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 58 p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
|+++++++|+|++ .++.|||+++|++
T Consensus 350 p~~g~~v~i~d~~~~~~~~~g~~GEl~v~g~~ 381 (525)
T PRK05851 350 PIPGMEVRISPGDGAAGVAGREIGEIEIRGAS 381 (525)
T ss_pred CCCCcEEEEECCCCCccCCCCCeEEEEEecCc
Confidence 9999999999865 3578999999874
>PRK09088 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.48 E-value=2.6e-13 Score=88.49 Aligned_cols=81 Identities=27% Similarity=0.326 Sum_probs=65.2
Q ss_pred CCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCC-C--CcccCceecCcCCcEEEEECCC-----CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAP-D--DFKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~-~--~~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
++++|.+++||++++....+++ .+.++++.||+||++........ . ..+.+++|+|+++++++++|++ .+
T Consensus 251 ~~~l~~~~~gG~~~~~~~~~~~~~~g~~v~~~YG~TE~~~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g 330 (488)
T PRK09088 251 LRHLTALFTGGAPHAAEDILGWLDDGIPMVDGFGMSEAGTVFGMSVDCDVIRAKAGAAGIPTPTVQTRVVDDQGNDCPAG 330 (488)
T ss_pred cccceEEEecCCCCCHHHHHHHHHhCCceeeeecccccccccccCCCcccccccCCccccCCCCcEEEEECCCCCCCcCC
Confidence 5689999999999999888877 57889999999999865433211 1 1355789999999999999876 36
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||++++++
T Consensus 331 ~~Gel~v~~~~ 341 (488)
T PRK09088 331 VPGELLLRGPN 341 (488)
T ss_pred CceEEEEECCc
Confidence 78999999863
>PRK12406 long-chain-fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=3.4e-13 Score=88.38 Aligned_cols=81 Identities=25% Similarity=0.375 Sum_probs=66.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++++.+++ ++..+++.||+||++.++.....+. .+.+++|+|+++++++++|++ .+
T Consensus 269 ~~~~l~~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 348 (509)
T PRK12406 269 DVSSLRHVIHAAAPCPADVKRAMIEWWGPVIYEYYGSTESGAVTFATSEDALSHPGTVGKAAPGAELRFVDEDGRPLPQG 348 (509)
T ss_pred CCCceeEEEEcCCCCCHHHHHHHHHHcCCcEEeeccccccCceEecCcccccccCCCcCccCCCcEEEEECCCCCCCCCC
Confidence 35789999999999999999888 6888999999999987655433222 345789999999999999975 36
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||+++++
T Consensus 349 ~~Gel~v~~~ 358 (509)
T PRK12406 349 EIGEIYSRIA 358 (509)
T ss_pred CceEEEEECC
Confidence 7899999885
>PLN02654 acetate-CoA ligase
Back Show alignment and domain information
Probab=99.48 E-value=2.6e-13 Score=92.08 Aligned_cols=81 Identities=25% Similarity=0.289 Sum_probs=65.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC---CeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD---IAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~---~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++||.++++|+++++++.+++ ++ .++.+.||+||+++........ ..+.+++|+|+++++++|+|++
T Consensus 395 ~l~~Lr~i~~~Ge~l~~~~~~~~~~~~g~~~~~i~~~yg~TE~g~~~~~~~~~~~~~~~gs~G~p~~g~~v~i~d~~g~~ 474 (666)
T PLN02654 395 SRKSLRVLGSVGEPINPSAWRWFFNVVGDSRCPISDTWWQTETGGFMITPLPGAWPQKPGSATFPFFGVQPVIVDEKGKE 474 (666)
T ss_pred ChhheeEEEEecCCCCHHHHHHHHHHhCCCCCceeccccccccCCeeeccCCCCCCCCCCccCCCCCCceEEEECCCCCC
Confidence 46789999999999999999887 55 6799999999998665433221 2466889999999999999976
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
+++.|||++++|
T Consensus 475 ~~~~~~Gel~v~~~ 488 (666)
T PLN02654 475 IEGECSGYLCVKKS 488 (666)
T ss_pred CCCCCceEEEEcCC
Confidence 346799999984
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Back Show alignment and domain information
Probab=99.48 E-value=2.9e-13 Score=95.66 Aligned_cols=82 Identities=22% Similarity=0.389 Sum_probs=68.4
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-CCCcceE
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-EEGNGEI 77 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-~g~~Gei 77 (83)
+++++|.+++||+++++++.+++ ++.++++.||+||++..+........+.+++|+|.+++++++.+.+ .++.|||
T Consensus 905 ~~~~lr~v~~gg~~l~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~vG~p~~g~~~~~~~~~~~~~~Gel 984 (1140)
T PRK06814 905 DFRSLRYVFAGAEKVKEETRQTWMEKFGIRILEGYGVTETAPVIALNTPMHNKAGTVGRLLPGIEYRLEPVPGIDEGGRL 984 (1140)
T ss_pred cccceeEEEEcCCcCCHHHHHHHHHHhCCcEEeccccccccceEEecCCCCCCCCcCCccCCCCeEEEeecCCCCCceEE
Confidence 46789999999999999999888 6889999999999987665543333456789999999999998765 3678999
Q ss_pred EEecCC
Q psy2847 78 CLKDLI 83 (83)
Q Consensus 78 ~~~~~~ 83 (83)
+++|++
T Consensus 985 ~v~g~~ 990 (1140)
T PRK06814 985 FVRGPN 990 (1140)
T ss_pred EEeCCC
Confidence 999974
>PRK08974 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.47 E-value=4.3e-13 Score=88.92 Aligned_cols=81 Identities=23% Similarity=0.431 Sum_probs=67.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.+++||+++++.+.++| ++..+++.||+||++..+....... ...+++|+|+++++++++|++ .|+
T Consensus 324 ~~~lr~~~~gg~~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~g~ 403 (560)
T PRK08974 324 FSSLKLSVGGGMAVQQAVAERWVKLTGQYLLEGYGLTECSPLVSVNPYDLDYYSGSIGLPVPSTEIKLVDDDGNEVPPGE 403 (560)
T ss_pred ccceeEEEecCccCCHHHHHHHHHHhCCcEEeeecccccCceeeccCCCCcccCCccccCcCCCEEEEECCCCCCCCCCC
Confidence 5689999999999999999888 6889999999999987765544322 345789999999999999876 367
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++++.
T Consensus 404 ~Gel~v~g~~ 413 (560)
T PRK08974 404 PGELWVKGPQ 413 (560)
T ss_pred ceEEEEecCC
Confidence 8999999863
>PRK07787 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.46 E-value=6.1e-13 Score=86.68 Aligned_cols=81 Identities=25% Similarity=0.330 Sum_probs=64.9
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCC------C-
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDE------E- 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~------g- 72 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++.............+++|+|+++++++++|++. +
T Consensus 240 l~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~vG~~~~g~~~~i~d~~~~~~~~~~~ 319 (471)
T PRK07787 240 LRGARLLVSGSAALPVPVFDRLAALTGHRPVERYGMTETLITLSTRADGERRPGWVGLPLAGVETRLVDEDGGPVPHDGE 319 (471)
T ss_pred ccceeEEEECCCCCCHHHHHHHHHHcCCCeecccCccccCcceecCCCCcccCCcccccCCCcEEEEECCCCCCCCCCCC
Confidence 5689999999999999999988 68889999999999765443322223457899999999999999761 2
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++|++
T Consensus 320 ~~Gei~v~g~~ 330 (471)
T PRK07787 320 TVGELQVRGPT 330 (471)
T ss_pred CceEEEEECcc
Confidence 37999999863
>PRK07059 Long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.46 E-value=3.3e-13 Score=89.40 Aligned_cols=82 Identities=24% Similarity=0.367 Sum_probs=66.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.++.||+++++.+.++| ++.++++.||+||++.++....... ....++|+|+++++++++|++ .|
T Consensus 325 ~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~p~~g~~v~i~d~~~~~~~~g 404 (557)
T PRK07059 325 DFSKLIVANGGGMAVQRPVAERWLEMTGCPITEGYGLSETSPVATCNPVDATEFSGTIGLPLPSTEVSIRDDDGNDLPLG 404 (557)
T ss_pred CchhheEEEeccccCCHHHHHHHHHHhCCCeeeccccccccchhhcCCCCCCCcCCcccCccCCcEEEEECCCCCCCCCC
Confidence 35689999999999999998887 7889999999999987655443322 345789999999999999975 36
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++++.
T Consensus 405 ~~Gel~v~g~~ 415 (557)
T PRK07059 405 EPGEICIRGPQ 415 (557)
T ss_pred CceEEEEeCCc
Confidence 78999999863
>TIGR01733 AA-adenyl-dom amino acid adenylation domain
Back Show alignment and domain information
Probab=99.46 E-value=4.5e-13 Score=85.35 Aligned_cols=81 Identities=20% Similarity=0.260 Sum_probs=66.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCCCC---c--ccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAPDD---F--KLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~~~---~--~~~~~g~p~~~~~~~v~d~~-- 70 (83)
.++++|.++++|+++++++.+++ ++ ..+++.||+||++.++....... . +..++|+|+++++++|+|++
T Consensus 232 ~~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~i~~~YG~tE~g~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~ 311 (408)
T TIGR01733 232 ALASLRLVILGGEALTPALVDRWRARGPGARLINLYGPTETTVWSTATLVDADDAPRESPVPIGRPLANTRLYVLDDDLR 311 (408)
T ss_pred cccCceEEEEeCccCCHHHHHHHHHhCCCcEEEecccCCceEEEEEEEEcCccccCCccccccCcccCCceEEEECCCCC
Confidence 35789999999999999999998 55 88999999999987665332221 1 16679999999999999976
Q ss_pred ---CCCcceEEEecC
Q psy2847 71 ---EEGNGEICLKDL 82 (83)
Q Consensus 71 ---~g~~Gei~~~~~ 82 (83)
.|+.|||+++++
T Consensus 312 ~~~~g~~Gel~v~~~ 326 (408)
T TIGR01733 312 PVPVGVVGELYIGGP 326 (408)
T ss_pred CCCCCCceEEEecCc
Confidence 467899999986
This domain is a subset of the AMP-binding domain found in Pfam (pfam00501) which also hits substrate--CoA ligases and luciferases. Sequences scoring in between trusted and noise for this model may be ambiguous as to whether they activate amino acids or other molecules lacking an alpha amino group.
>PRK07514 malonyl-CoA synthase; Validated
Back Show alignment and domain information
Probab=99.46 E-value=3.6e-13 Score=87.98 Aligned_cols=81 Identities=27% Similarity=0.376 Sum_probs=65.0
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~ 73 (83)
++++|.+++||+++++++.+++ ++.++++.||+||++..............++|.|+++++++++|++ .|+
T Consensus 268 ~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~~~~v~i~d~~~~~~~~~g~ 347 (504)
T PRK07514 268 AAHMRLFISGSAPLLAETHREFQERTGHAILERYGMTETNMNTSNPYDGERRAGTVGFPLPGVSLRVTDPETGAELPPGE 347 (504)
T ss_pred ccceeeEEecCCCCCHHHHHHHHHHhCCcceeecccccccccccCCccccccCcccccCCCCcEEEEEECCCCCCCCCCC
Confidence 4689999999999999999988 6788999999999875543322222345789999999999999943 367
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++++.
T Consensus 348 ~Gel~i~~~~ 357 (504)
T PRK07514 348 IGMIEVKGPN 357 (504)
T ss_pred ceEEEEecCC
Confidence 8999999863
>PRK06087 short chain acyl-CoA synthetase; Reviewed
Back Show alignment and domain information
Probab=99.46 E-value=5.7e-13 Score=88.05 Aligned_cols=82 Identities=23% Similarity=0.292 Sum_probs=66.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++++.+.+ .+.++++.||+||++.......... ....++|+|++++.++++|++ .+
T Consensus 300 ~~~~lr~i~~gG~~~~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g 379 (547)
T PRK06087 300 DLSALRFFLCGGTTIPKKVARECQQRGIKLLSVYGSTESSPHAVVNLDDPLSRFMHTDGYAAAGVEIKVVDEARKTLPPG 379 (547)
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHHHcCCcEEEEecccccCCccccCCCcchhhcCCcCCccCCCceEEEEcCCCCCCcCC
Confidence 35789999999999999998887 7889999999999987655433221 234568999999999999976 46
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++|++
T Consensus 380 ~~Gel~v~g~~ 390 (547)
T PRK06087 380 CEGEEASRGPN 390 (547)
T ss_pred CcceEEEeccc
Confidence 78999999863
>TIGR02262 benz_CoA_lig benzoate-CoA ligase family
Back Show alignment and domain information
Probab=99.46 E-value=4.3e-13 Score=87.92 Aligned_cols=79 Identities=20% Similarity=0.387 Sum_probs=65.7
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCCcc
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEGNG 75 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~~G 75 (83)
.++|.++++|+++++++.+.| ++.++++.||+||++.+.........+.+++|+|.++++++++|++ .++.|
T Consensus 278 ~~l~~~~~~G~~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~~~g~~G 357 (508)
T TIGR02262 278 VRLRLCTSAGEALPAEVGQRWQARFGVDIVDGIGSTEMLHIFLSNLPGDVRYGTSGKPVPGYRLRLVGDGGQDVAAGEPG 357 (508)
T ss_pred ccceeEEEcCCCCCHHHHHHHHHHhCCchhhCccccccCceeecCCccCCCCCCcCCCCCCcEEEEECCCCCCCCCCCee
Confidence 579999999999999999888 7889999999999987655443333456789999999999999965 46789
Q ss_pred eEEEecC
Q psy2847 76 EICLKDL 82 (83)
Q Consensus 76 ei~~~~~ 82 (83)
||+++++
T Consensus 358 el~i~~~ 364 (508)
T TIGR02262 358 ELLISGP 364 (508)
T ss_pred EEEEecC
Confidence 9999986
Characterized members of this protein family include benzoate-CoA ligase, 4-hydroxybenzoate-CoA ligase, 2-aminobenzoate-CoA ligase, etc. Members are related to fatty acid and acetate CoA ligases.
>PLN02430 long-chain-fatty-acid-CoA ligase
Back Show alignment and domain information
Probab=99.45 E-value=3.9e-13 Score=91.21 Aligned_cols=80 Identities=28% Similarity=0.523 Sum_probs=63.0
Q ss_pred CceEEEEEecCCCCHHHHHHh--cC-CeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECC-C-------C
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LD-IAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDP-D-------E 71 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~-~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~-~-------~ 71 (83)
+++|.+++||+++++++.+.+ ++ ..+++.||+||+++..+.....+ ...+++|+|.+++++++.|. + .
T Consensus 383 ~~lr~~~~gga~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~gsvG~p~~~~evki~d~~~~g~~~~~~ 462 (660)
T PLN02430 383 GRLRLLISGGAPLSTEIEEFLRVTSCAFVVQGYGLTETLGPTTLGFPDEMCMLGTVGAPAVYNELRLEEVPEMGYDPLGE 462 (660)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHhcCCCeeeecchhhhhhceEeeccccCCCCCCccCCCCceEEEEEEcCCcCcccCCC
Confidence 589999999999999987665 44 67999999999987665543332 34689999999999999862 2 2
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
+..|||++|||+
T Consensus 463 ~~~GEi~vrg~~ 474 (660)
T PLN02430 463 PPRGEICVRGKC 474 (660)
T ss_pred CCcceEEecCCC
Confidence 347999999974
>PRK08751 putative long-chain fatty acyl CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.45 E-value=5e-13 Score=88.54 Aligned_cols=81 Identities=21% Similarity=0.383 Sum_probs=67.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++.+.++| ++..+++.||+||++..++....+. ...+++|+|+++++++++|++ .+
T Consensus 327 ~l~~lr~v~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~~g 406 (560)
T PRK08751 327 DFSSLKMTLGGGMAVQRSVAERWKQVTGLTLVEAYGLTETSPAACINPLTLKEYNGSIGLPIPSTDACIKDDAGTVLAIG 406 (560)
T ss_pred chhhheeeeeCCCCCCHHHHHHHHHHhCCeEEEeeccccCCCceecccccccccCCCcCccCCCceEEEECCCCCCCCCC
Confidence 35689999999999999998888 6788999999999987665544322 345789999999999999976 46
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||+++++
T Consensus 407 ~~Gel~v~~~ 416 (560)
T PRK08751 407 EIGELCIKGP 416 (560)
T ss_pred CceEEEEecC
Confidence 7899999986
>PRK05605 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.45 E-value=4.3e-13 Score=89.10 Aligned_cols=81 Identities=25% Similarity=0.389 Sum_probs=66.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD------- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~------- 70 (83)
.++++|.+++||+++++++.+++ ++..+++.||+||++.++....... .+.+++|+|+++..++++|++
T Consensus 334 ~~~~lr~i~~gg~~l~~~~~~~~~~~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~~ 413 (573)
T PRK05605 334 DLSGVRNAFSGAMALPVSTVELWEKLTGGLLVEGYGLTETSPIIVGNPMSDDRRPGYVGVPFPDTEVRIVDPEDPDETMP 413 (573)
T ss_pred CchhccEEEECCCcCCHHHHHHHHHHhCCCeecccccchhchhhhcCCcccCCcCCccccCCCCCEEEEEcCCCCCccCC
Confidence 35789999999999999999888 6788999999999987665443322 345789999999999999865
Q ss_pred CCCcceEEEecC
Q psy2847 71 EEGNGEICLKDL 82 (83)
Q Consensus 71 ~g~~Gei~~~~~ 82 (83)
.++.|||+++++
T Consensus 414 ~g~~Gel~v~~~ 425 (573)
T PRK05605 414 DGEEGELLVRGP 425 (573)
T ss_pred CCCeeEEEEecC
Confidence 367899999986
>PRK06187 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.44 E-value=4.4e-13 Score=87.52 Aligned_cols=82 Identities=32% Similarity=0.545 Sum_probs=67.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCc------ccCceecCcCCcEEEEECCCC-
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDF------KLDGVGRTIPGTQTKIVDPDE- 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~------~~~~~g~p~~~~~~~v~d~~~- 71 (83)
.++++|.+++||+++++++.+++ ++..+++.||+||++........... ...++|+|++++.++++|++.
T Consensus 279 ~~~~l~~v~~~Ge~l~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~ 358 (521)
T PRK06187 279 DFSSLRLVIYGGAALPPALLREFKEKFGIDLVQGYGMTETSPVVSVLPPEDQLPGQWTKRRSAGRPLPGVEARIVDDDGD 358 (521)
T ss_pred CcchhhEEEEcCcCCCHHHHHHHHHHhCcchheeeccCccCcccccCCcccccccccccCCccccccCCeEEEEECCCCC
Confidence 45789999999999999999988 58899999999999866554432222 567899999999999999762
Q ss_pred ------CCcceEEEecCC
Q psy2847 72 ------EGNGEICLKDLI 83 (83)
Q Consensus 72 ------g~~Gei~~~~~~ 83 (83)
++.|||+++++.
T Consensus 359 ~~~~~~g~~Gel~v~~~~ 376 (521)
T PRK06187 359 ELPPDGGEVGEIIVRGPW 376 (521)
T ss_pred CCCCCCCCeeEEEEECcc
Confidence 788999999863
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Back Show alignment and domain information
Probab=99.44 E-value=5e-13 Score=87.21 Aligned_cols=78 Identities=26% Similarity=0.381 Sum_probs=62.8
Q ss_pred CCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCCCCCcceEE
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPDEEGNGEIC 78 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~~g~~Gei~ 78 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+....... ....++|+|.++++++++ .++.|||+
T Consensus 229 l~~l~~i~~gG~~l~~~~~~~~~~~~~~l~~~YG~TE~~~~~~~~~~~~~~~~~~~~G~~~p~~~v~i~---~g~~Gel~ 305 (452)
T PRK07445 229 LAQFRTILLGGAPAWPSLLEQARQLQLRLAPTYGMTETASQIATLKPDDFLAGNNSSGQVLPHAQITIP---ANQTGNIT 305 (452)
T ss_pred hhcceEEEECCccCCHHHHHHHHhcCCeEecCcchhhhcccccccCchhhccCCCcCCccCCCCeEEEc---CCCcceEE
Confidence 5789999999999999999888 6888999999999875544332222 245679999999999998 35689999
Q ss_pred EecCC
Q psy2847 79 LKDLI 83 (83)
Q Consensus 79 ~~~~~ 83 (83)
+++|+
T Consensus 306 v~g~~ 310 (452)
T PRK07445 306 IQAQS 310 (452)
T ss_pred EeCCc
Confidence 99874
>PRK06145 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.43 E-value=1.2e-12 Score=85.49 Aligned_cols=82 Identities=21% Similarity=0.374 Sum_probs=65.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++..+...... ....+++|+|++++++++.|++
T Consensus 262 ~~~~l~~~~~gG~~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~ 341 (497)
T PRK06145 262 DLDSLAWCIGGGEKTPESRIRDFTRVFTRARYIDAYGLTETCSGDTLMEAGREIEKIGSTGRALAHVEIRIADGAGRWLP 341 (497)
T ss_pred ccccceEEEecCCCCCHHHHHHHHHHcCCCceEEeecCcccCCcceeccCccccccCCCcccCCCCceEEEECCCCCCCC
Confidence 35689999999999999998888 4 57799999999998765443322 1345689999999999999876
Q ss_pred CCCcceEEEecCC
Q psy2847 71 EEGNGEICLKDLI 83 (83)
Q Consensus 71 ~g~~Gei~~~~~~ 83 (83)
.++.|||+++|++
T Consensus 342 ~~~~Gel~v~g~~ 354 (497)
T PRK06145 342 PNMKGEICMRGPK 354 (497)
T ss_pred CCCceEEEEECcc
Confidence 3678999999863
>PRK07769 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.42 E-value=5.3e-13 Score=89.76 Aligned_cols=82 Identities=26% Similarity=0.324 Sum_probs=63.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c---C---CeEecccCccccccceeecCCCC-----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L---D---IAICEVFGMSECAGAHTVSAPDD----------------------- 49 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~---~---~~~~~~yG~tE~~~~~~~~~~~~----------------------- 49 (83)
+++++|.+++||+++++++.++| + + ..+++.||+||++..++......
T Consensus 304 ~l~~lr~~~~gg~~l~~~~~~~~~~~~~~~g~~~~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 383 (631)
T PRK07769 304 DLSNVKGLLNGSEPVSPASMRKFNEAFAPYGLPPTAIKPSYGMAEATLFVSTTPMDEEPTVIYVDRDELNAGRFVEVPAD 383 (631)
T ss_pred chhheeeEEeccCCCCHHHHHHHHHHHhhcCCChhhcccccchhhheeEEeccCCCCCceEEEEcHHHHhCCCeEecCCC
Confidence 46789999999999999999888 4 2 24899999999876554432111
Q ss_pred ----cccCceecCcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 50 ----FKLDGVGRTIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 50 ----~~~~~~g~p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
....++|+|.++.+++++|++ .|+.|||+++||+
T Consensus 384 ~~~~~~~~s~G~~~~~~~~~ivd~~~g~~~~~ge~GEl~v~gp~ 427 (631)
T PRK07769 384 APNAVAQVSAGKVGVSEWAVIVDPETASELPDGQIGEIWLHGNN 427 (631)
T ss_pred CCCceeEEeCCCcCCCcEEEEEcCCCCcCCCCCCEEEEEecCCC
Confidence 012468999999999999854 4788999999974
>PRK08315 AMP-binding domain protein; Validated
Back Show alignment and domain information
Probab=99.42 E-value=8e-13 Score=87.43 Aligned_cols=81 Identities=26% Similarity=0.530 Sum_probs=65.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCC---cccCceecCcCCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~---~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++++|.++++|+++++++.+++ ++. .+++.||+||++.+++...... .+..++|+|+++++++++|++
T Consensus 313 ~~~~lr~~~~~G~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~v~i~d~~~~~~ 392 (559)
T PRK08315 313 DLSSLRTGIMAGSPCPIEVMKRVIDKMHMSEVTIAYGMTETSPVSTQTRTDDPLEKRVTTVGRALPHLEVKIVDPETGET 392 (559)
T ss_pred CchhhheeEecCCCCCHHHHHHHHHHcCCcceeEEEcccccccceeecCcccchhhccCCCCccCCCcEEEEEcCccCCc
Confidence 35789999999999999998887 544 4999999999987665443322 345789999999999999976
Q ss_pred --CCCcceEEEecC
Q psy2847 71 --EEGNGEICLKDL 82 (83)
Q Consensus 71 --~g~~Gei~~~~~ 82 (83)
.|+.|||+++++
T Consensus 393 ~~~g~~GEl~v~g~ 406 (559)
T PRK08315 393 VPRGEQGELCTRGY 406 (559)
T ss_pred CCCCCceEEEEECc
Confidence 477899999986
>PRK03640 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.42 E-value=1e-12 Score=85.53 Aligned_cols=80 Identities=24% Similarity=0.297 Sum_probs=65.0
Q ss_pred CceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC----CCCcc
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD----EEGNG 75 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~----~g~~G 75 (83)
.++|.++++|+++++.+++++ ++.++++.||+||++..+...... ....+++|+|++++++++.|++ .++.|
T Consensus 254 ~~lr~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~~~~~~~~~g~~G 333 (483)
T PRK03640 254 SSFRCMLLGGGPAPKPLLEQCKEKGIPVYQSYGMTETASQIVTLSPEDALTKLGSAGKPLFPCELKIEKDGVVVPPFEEG 333 (483)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHhCCCeeeeeccCcccccccccCcccccccCCCcccccCCcEEEEecCCCcCCCCCce
Confidence 589999999999999999888 788999999999987543332222 2456889999999999999863 46789
Q ss_pred eEEEecCC
Q psy2847 76 EICLKDLI 83 (83)
Q Consensus 76 ei~~~~~~ 83 (83)
||+++||+
T Consensus 334 el~v~g~~ 341 (483)
T PRK03640 334 EIVVKGPN 341 (483)
T ss_pred EEEEECcc
Confidence 99999873
>PRK03584 acetoacetyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.42 E-value=1e-12 Score=88.78 Aligned_cols=81 Identities=15% Similarity=0.120 Sum_probs=65.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c--CCeEecccCccccccceeecCC-CCcccCceecCcCCcEEEEECCC----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L--DIAICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPD----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~--~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~g~p~~~~~~~v~d~~----~ 71 (83)
++++||.++++|+++++++.+++ + +..+.+.||+||+++....... ...+.+++|.|.++++++|+|++ .
T Consensus 381 ~l~sLr~i~~~Ge~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~~~ivd~~g~~~~ 460 (655)
T PRK03584 381 DLSALRTIGSTGSPLPPEGFDWVYEHVKADVWLASISGGTDICSCFVGGNPLLPVYRGEIQCRGLGMAVEAWDEDGRPVV 460 (655)
T ss_pred ChhheEEEEEecCCCCHHHHHHHHHHhCCCceEEeccChHhhhcccccCCCCCCcCCCccCCCcCCceeEEECCCCCCCC
Confidence 46799999999999999999887 4 4789999999998654332211 12456789999999999999987 3
Q ss_pred CCcceEEEecC
Q psy2847 72 EGNGEICLKDL 82 (83)
Q Consensus 72 g~~Gei~~~~~ 82 (83)
++.|||++++|
T Consensus 461 g~~GeL~v~gp 471 (655)
T PRK03584 461 GEVGELVCTKP 471 (655)
T ss_pred CCceEEEEccC
Confidence 78899999986
>PRK12583 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.42 E-value=1.2e-12 Score=86.54 Aligned_cols=81 Identities=27% Similarity=0.482 Sum_probs=66.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCCCC---cccCceecCcCCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++++|.+++||+++++++.+++ ++ ..+.+.||+||++.++....... .+..++|+|++++.++++|++
T Consensus 315 ~~~~lr~i~~~G~~~~~~~~~~~~~~~~~~~i~~~YG~tE~~~~~~~~~~~~~~~~~~~~vG~p~~~~~~~i~d~~~~~~ 394 (558)
T PRK12583 315 DLSSLRTGIMAGAPCPIEVMRRVMDEMHMAEVQIAYGMTETSPVSLQTTAADDLERRVETVGRTQPHLEVKVVDPDGATV 394 (558)
T ss_pred CchhheEEEecCCCCCHHHHHHHHHHcCCcceeccccccccccceeccCcccccccccCCCCccCCCCeEEEECCCCCCC
Confidence 35789999999999999999887 44 56999999999987765543221 345789999999999999976
Q ss_pred -CCCcceEEEecC
Q psy2847 71 -EEGNGEICLKDL 82 (83)
Q Consensus 71 -~g~~Gei~~~~~ 82 (83)
.++.|||+++|+
T Consensus 395 ~~g~~Gel~v~g~ 407 (558)
T PRK12583 395 PRGEIGELCTRGY 407 (558)
T ss_pred CCCCeeEEEEEeC
Confidence 467899999886
>TIGR03098 ligase_PEP_1 acyl-CoA ligase (AMP-forming), exosortase system type 1 associated
Back Show alignment and domain information
Probab=99.42 E-value=1.3e-12 Score=85.53 Aligned_cols=81 Identities=16% Similarity=0.329 Sum_probs=65.8
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
+++++|.++++|+++++++.+++ + +..+++.||+||++......... ..+.+++|+|+++++++++|++ .
T Consensus 272 ~~~~l~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~~~~~~i~~~~~~~~~~ 351 (515)
T TIGR03098 272 AAPSLRYLTNSGGAMPRATLSRLRSFLPNARLFLMYGLTEAFRSTYLPPEEVDRRPDSIGKAIPNAEVLVLREDGSECAP 351 (515)
T ss_pred CccceEEEEecCCcCCHHHHHHHHHHCCCCeEeeeeccccccceEecccccccCCCCCcceecCCCEEEEECCCCCCCCC
Confidence 34689999999999999999988 4 67899999999987654433221 2456789999999999999876 3
Q ss_pred CCcceEEEecC
Q psy2847 72 EGNGEICLKDL 82 (83)
Q Consensus 72 g~~Gei~~~~~ 82 (83)
++.|||+++|+
T Consensus 352 ~~~Gel~v~g~ 362 (515)
T TIGR03098 352 GEEGELVHRGA 362 (515)
T ss_pred CCceEEEEcCc
Confidence 67899999986
This group of proteins contains an AMP-binding domain (pfam00501) associated with acyl CoA-ligases. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present next to a decarboxylase enzyme. A number of sequences from Burkholderia species also hit this model, but the genomic context is obviously different. The hypothesis of a constant substrate for this family is only strong where the exosortase context is present.
>PRK07470 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.42 E-value=7.8e-13 Score=87.03 Aligned_cols=82 Identities=23% Similarity=0.366 Sum_probs=65.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC--------CcccCceecCcCCcEEEEECCC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD--------DFKLDGVGRTIPGTQTKIVDPD 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~--------~~~~~~~g~p~~~~~~~v~d~~ 70 (83)
+++++|.+++||++++++..+++ ++..+++.||+||+++.+...... ....+++|+|.++++++++|++
T Consensus 278 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~ 357 (528)
T PRK07470 278 DHSSLRYVIYAGAPMYRADQKRALAKLGKVLVQYFGLGEVTGNITVLPPALHDAEDGPDARIGTCGFERTGMEVQIQDDE 357 (528)
T ss_pred CCcceEEEEEcCCCCCHHHHHHHHHHhCcHHHHhCCCcccCCceeecchhhccccccccceeeccCcccCCcEEEEECCC
Confidence 45789999999999999988887 677899999999998765543211 1245688999999999999976
Q ss_pred -----CCCcceEEEecCC
Q psy2847 71 -----EEGNGEICLKDLI 83 (83)
Q Consensus 71 -----~g~~Gei~~~~~~ 83 (83)
.++.|||+++++.
T Consensus 358 ~~~~~~g~~Gel~i~~~~ 375 (528)
T PRK07470 358 GRELPPGETGEICVIGPA 375 (528)
T ss_pred CCCCCCCCceEEEEeCCc
Confidence 4678999999863
>PRK07638 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.41 E-value=2.1e-12 Score=84.36 Aligned_cols=80 Identities=19% Similarity=0.255 Sum_probs=64.4
Q ss_pred CceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CCC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
.+.+.++++|+++++++.+++ + +..+++.||+||++..+...... ..+.+++|+|+++++++++|++ .|+
T Consensus 253 ~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~g~~~~~g~ 332 (487)
T PRK07638 253 ENKMKIISSGAKWEAEAKEKIKNIFPYAKLYEFYGASELSFVTALVDEESERRPNSVGRPFHNVQVRICNEAGEEVQKGE 332 (487)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHcCCCeEEEEecCCccCceEEecccccCCCCCCCCcccCCcEEEEECCCCCCCCCCC
Confidence 345667889999999988887 4 67899999999998766554322 2456789999999999999976 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||+++++.
T Consensus 333 ~Gel~v~~~~ 342 (487)
T PRK07638 333 IGTVYVKSPQ 342 (487)
T ss_pred CeEEEEeccc
Confidence 8999999863
>PRK08276 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.41 E-value=1.3e-12 Score=85.50 Aligned_cols=80 Identities=24% Similarity=0.331 Sum_probs=65.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.++++|+++++++.+++ ++..+++.||+||++.++...... ....+++|+|+ +..++++|++ .|
T Consensus 260 ~~~~lr~i~~~g~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~G~~~-~~~~~i~d~~~~~~~~g 338 (502)
T PRK08276 260 DVSSLRVAIHAAAPCPVEVKRAMIDWWGPIIHEYYASSEGGGVTVITSEDWLAHPGSVGKAV-LGEVRILDEDGNELPPG 338 (502)
T ss_pred CcccceEEEecCCCCCHHHHHHHHHHhCcHhhhhcccccccceeEecCccccccCCCcceec-ccEEEEECCCCCCCcCC
Confidence 46789999999999999999988 677899999999998755544332 24557899999 8899999865 36
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||+++++
T Consensus 339 ~~Gel~v~~~ 348 (502)
T PRK08276 339 EIGTVYFEMD 348 (502)
T ss_pred CceEEEEECC
Confidence 7899999975
>PRK08316 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.41 E-value=1.9e-12 Score=84.71 Aligned_cols=81 Identities=26% Similarity=0.420 Sum_probs=66.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
+++++|.+++||++++.++.+++ + +..+++.||+||++.+........ ...+++|+|+++++++++|++
T Consensus 284 ~~~~l~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~ 363 (523)
T PRK08316 284 DLSSLRKGYYGASIMPVEVLKELRERLPGLRFYNCYGQTEIAPLATVLGPEEHLRRPGSAGRPVLNVETRVVDDDGNDVA 363 (523)
T ss_pred CcccceEEEEcCCcCCHHHHHHHHHHcCCCceeeeecccccCccccccCccccccccCCcccCCCCcEEEEEcCCCCCCC
Confidence 35689999999999999998888 4 678999999999987655433221 345789999999999999975
Q ss_pred CCCcceEEEecC
Q psy2847 71 EEGNGEICLKDL 82 (83)
Q Consensus 71 ~g~~Gei~~~~~ 82 (83)
.++.|||+++++
T Consensus 364 ~g~~Gei~v~~~ 375 (523)
T PRK08316 364 PGEVGEIVHRSP 375 (523)
T ss_pred CCCcceEEEECC
Confidence 467899999986
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.41 E-value=1.1e-12 Score=101.96 Aligned_cols=81 Identities=17% Similarity=0.194 Sum_probs=68.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh-cCCeEecccCccccccceeecCCC--CcccCceecCcCCcEEEEECCC-----CCCc
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF-LDIAICEVFGMSECAGAHTVSAPD--DFKLDGVGRTIPGTQTKIVDPD-----EEGN 74 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~-~~~~~~~~yG~tE~~~~~~~~~~~--~~~~~~~g~p~~~~~~~v~d~~-----~g~~ 74 (83)
++++|.+++||+++++++.++| .+.+++|.||+||++..++..... .....++|+|++++++.|+|++ .|..
T Consensus 3310 ~~~lr~~~~gGe~l~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~G~~ 3389 (5163)
T PRK12316 3310 CTSLKRIVCGGEALPADLQQQVFAGLPLYNLYGPTEATITVTHWQCVEEGKDAVPIGRPIANRACYILDGSLEPVPVGAL 3389 (5163)
T ss_pred CCcceEEEEccccCCHHHHHHHHhCCcEeeccCCCccEeeEeEEeccCCCCCCCccceecCCCEEEEECCCCCCCCCCCC
Confidence 4689999999999999999999 788899999999998766544332 2445789999999999999976 4789
Q ss_pred ceEEEecCC
Q psy2847 75 GEICLKDLI 83 (83)
Q Consensus 75 Gei~~~~~~ 83 (83)
|||+++|+.
T Consensus 3390 GEl~i~G~~ 3398 (5163)
T PRK12316 3390 GELYLGGEG 3398 (5163)
T ss_pred ceEEecccc
Confidence 999999873
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.40 E-value=1.4e-12 Score=100.21 Aligned_cols=82 Identities=15% Similarity=0.182 Sum_probs=66.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC-----cccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
++++||.+++||+++++++.++| + +..++|.||+||++..+....... ....++|+|+++++++|+|++
T Consensus 3349 ~~~~lr~~~~gGe~~~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~ 3428 (3956)
T PRK12467 3349 DCASLDIYVFGGEAVPPAAFEQVKRKLKPRGLTNGYGPTEAVVTVTLWKCGGDAVCEAPYAPIGRPVAGRSIYVLDGQLN 3428 (3956)
T ss_pred CCCCceEEEEecCCCCHHHHHHHHHhCCCCEEEeCcccchhEeeeEEEecccccccCCCCCCCccccCCCEEEEECCCCC
Confidence 35789999999999999999988 3 578999999999986654332211 223679999999999999976
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|+.
T Consensus 3429 ~vp~G~~GEL~i~G~~ 3444 (3956)
T PRK12467 3429 PVPVGVAGELYIGGVG 3444 (3956)
T ss_pred CCCCCCCceEEEcchh
Confidence 4789999999973
>PRK06188 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.40 E-value=1.6e-12 Score=85.48 Aligned_cols=81 Identities=23% Similarity=0.356 Sum_probs=64.9
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC------cccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD------FKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~------~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
+++++|.+++||++++++..+++ ++..+++.||+||++..++...... ....++|+|+++++++++|++
T Consensus 279 ~l~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~G~p~~g~~v~i~~~~~~ 358 (524)
T PRK06188 279 DLSSLETVYYGASPMSPVRLAEAIERFGPIFAQYYGQTEAPMVITYLRKRDHDPDDPKRLTSCGRPTPGLRVALLDEDGR 358 (524)
T ss_pred CCcceeEEEEcCCCCCHHHHHHHHHHhCchhhheeCccccCCceeecCchhccccccccCCccccccCCcEEEEEcCCCC
Confidence 35789999999999999988777 6777999999999976555432211 345678999999999999976
Q ss_pred ---CCCcceEEEecC
Q psy2847 71 ---EEGNGEICLKDL 82 (83)
Q Consensus 71 ---~g~~Gei~~~~~ 82 (83)
.|+.|||+++++
T Consensus 359 ~~~~g~~Gel~v~~~ 373 (524)
T PRK06188 359 EVAQGEVGEICVRGP 373 (524)
T ss_pred CCCCCCeeEEEEECc
Confidence 467899999986
>PRK10252 entF enterobactin synthase subunit F; Provisional
Back Show alignment and domain information
Probab=99.40 E-value=1.4e-12 Score=92.94 Aligned_cols=80 Identities=16% Similarity=0.195 Sum_probs=65.3
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-------CcccCceecCcCCcEEEEECCC--
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-------DFKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-------~~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
++++|.+++||+++++++.++| ++..+++.||+||++..++..... .....++|+|+++++++|+|++
T Consensus 716 ~~~lr~i~~gGe~l~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~ 795 (1296)
T PRK10252 716 CASLRQVFCSGEALPADLCREWQQLTGAPLHNLYGPTEAAVDVSWYPAFGEELAAVRGSSVPIGYPVWNTGLRILDARMR 795 (1296)
T ss_pred CCCccEEEEecCCCCHHHHHHHHhcCCCEEEeCCCcchhhheeeeeecccccccccCCCCCCcccccCCCEEEEECCCCC
Confidence 4689999999999999999988 678999999999998655443221 1234579999999999999976
Q ss_pred ---CCCcceEEEecC
Q psy2847 71 ---EEGNGEICLKDL 82 (83)
Q Consensus 71 ---~g~~Gei~~~~~ 82 (83)
.|+.|||+++|+
T Consensus 796 ~~~~g~~Gel~i~g~ 810 (1296)
T PRK10252 796 PVPPGVAGDLYLTGI 810 (1296)
T ss_pred CCCCCCceEEEeccc
Confidence 478999999986
>PRK05857 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.40 E-value=2.4e-12 Score=85.27 Aligned_cols=82 Identities=21% Similarity=0.340 Sum_probs=63.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC-----cccCceecCcCCcEEEEECCCC---
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD-----FKLDGVGRTIPGTQTKIVDPDE--- 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~-----~~~~~~g~p~~~~~~~v~d~~~--- 71 (83)
+++++|.+++||++++....+++ ++.++++.||+||++.......... .+.+++|+|+++++++++|++.
T Consensus 284 ~~~~lr~~~~gG~~~~~~~~~~~~~~g~~i~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~v~i~d~~~~~~ 363 (540)
T PRK05857 284 TVPSLRLVGYGGSRAIAADVRFIEATGVRTAQVYGLSETGCTALCLPTDDGSIVKIEAGAVGRPYPGVDVYLAATDGIGP 363 (540)
T ss_pred cCccceEEEEcCccCCchhHHHHHHhCCeeecccCCCcCCceeeecccccccccccccCCcCcccCCcEEEEECccccCc
Confidence 46789999999999988776544 7889999999999975433222211 2357899999999999998652
Q ss_pred --------CCcceEEEecCC
Q psy2847 72 --------EGNGEICLKDLI 83 (83)
Q Consensus 72 --------g~~Gei~~~~~~ 83 (83)
++.|||+++++.
T Consensus 364 ~~~~~~~~~~~Gel~v~g~~ 383 (540)
T PRK05857 364 TAPGAGPSASFGTLWIKSPA 383 (540)
T ss_pred cccccCCCCCcceEEEeCcc
Confidence 457999999973
>PRK13390 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.39 E-value=1.5e-12 Score=85.19 Aligned_cols=80 Identities=23% Similarity=0.349 Sum_probs=64.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCC-----CCC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++++|.++++|+++++++.+.+ ++..+++.||+||+++++....... ...+++|+|+++ .++++|++ .|+
T Consensus 269 ~~~l~~v~~~g~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g-~~~i~d~~~~~~~~g~ 347 (501)
T PRK13390 269 VSSLRAVIHAAAPCPVDVKHAMIDWLGPIVYEYYSSTEAHGMTFIDSPDWLAHPGSVGRSVLG-DLHICDDDGNELPAGR 347 (501)
T ss_pred hhhhheEEEcCCCCCHHHHHHHHHhcCCceeeeecccccCceEEecchhhccCCCCcCCcccc-eEEEECCCCCCCCCCC
Confidence 5689999999999999998887 6788999999999987554433221 345789999999 68999865 478
Q ss_pred cceEEEecCC
Q psy2847 74 NGEICLKDLI 83 (83)
Q Consensus 74 ~Gei~~~~~~ 83 (83)
.|||++++++
T Consensus 348 ~Gel~v~~~~ 357 (501)
T PRK13390 348 IGTVYFERDR 357 (501)
T ss_pred ceEEEEecCC
Confidence 8999999863
>PLN02330 4-coumarate--CoA ligase-like 1
Back Show alignment and domain information
Probab=99.39 E-value=2.7e-12 Score=85.03 Aligned_cols=78 Identities=26% Similarity=0.545 Sum_probs=62.0
Q ss_pred ceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecC-CC----CcccCceecCcCCcEEEEECCC-----
Q psy2847 5 RCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSA-PD----DFKLDGVGRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~-~~----~~~~~~~g~p~~~~~~~v~d~~----- 70 (83)
++|.++++|+++++++.+++ + +.++++.||+||++.+..... .. ..+..++|+|+++++++++|++
T Consensus 304 ~l~~i~~~g~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~vG~~~~~~~v~i~d~~~~~~~ 383 (546)
T PLN02330 304 KLQAIMTAAAPLAPELLTAFEAKFPGVQVQEAYGLTEHSCITLTHGDPEKGHGIAKKNSVGFILPNLEVKFIDPDTGRSL 383 (546)
T ss_pred eeeeEEEcCCcCCHHHHHHHHHHcCCCeEEecccccccccceecCCCccccccccccCccccccCCcEEEEEeCCCCccC
Confidence 47899999999999999988 5 789999999999975543221 11 1234679999999999999854
Q ss_pred -CCCcceEEEecC
Q psy2847 71 -EEGNGEICLKDL 82 (83)
Q Consensus 71 -~g~~Gei~~~~~ 82 (83)
.|+.|||+++|+
T Consensus 384 p~g~~Gel~v~g~ 396 (546)
T PLN02330 384 PKNTPGELCVRSQ 396 (546)
T ss_pred CCCCceEEEEecc
Confidence 367899999986
>PRK12316 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.39 E-value=1.7e-12 Score=101.05 Aligned_cols=81 Identities=17% Similarity=0.155 Sum_probs=65.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh----cCCeEecccCccccccceeecCC--CCcccCceecCcCCcEEEEECCC-----C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF----LDIAICEVFGMSECAGAHTVSAP--DDFKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~----~~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
++++|.+++||+++++++.++| .+.+++|.||+||++..+..... ......++|+|+++++++|+|++ .
T Consensus 769 ~~~l~~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~~p~ 848 (5163)
T PRK12316 769 CTSLRRIVCSGEALPADAQEQVFAKLPQAGLYNLYGPTEAAIDVTHWTCVEEGGDSVPIGRPIANLACYILDANLEPVPV 848 (5163)
T ss_pred CCCccEEEEeeccCCHHHHHHHHHhCCCCeEEeCcCcChheeeeeEEecccccCCCCCCccccCCCEEEEECCCCCCCCC
Confidence 5689999999999999999888 46789999999999854433222 12345679999999999999976 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++|+.
T Consensus 849 G~~GEl~i~G~~ 860 (5163)
T PRK12316 849 GVLGELYLAGRG 860 (5163)
T ss_pred CCceEEEecccc
Confidence 789999999873
>PRK07008 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.38 E-value=2.8e-12 Score=84.92 Aligned_cols=82 Identities=23% Similarity=0.340 Sum_probs=64.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-----------cccCceecCcCCcEEEEE
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIV 67 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-----------~~~~~~g~p~~~~~~~v~ 67 (83)
+++++|.++++|+++++++.+++ ++..+++.||+||++..+....... ....++|+|+++++++++
T Consensus 291 ~~~~l~~~~~~G~~l~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~p~pg~~~~i~ 370 (539)
T PRK07008 291 RFSTLRRTVIGGSACPPAMIRTFEDEYGVEVIHAWGMTEMSPLGTLCKLKWKHSQLPLDEQRKLLEKQGRVIYGVDMKIV 370 (539)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHHHhCCceecccccccccccceecccccccccCCchhhhhhcccCCccccceEEEEE
Confidence 45789999999999999999988 7889999999999986544332110 113578999999999999
Q ss_pred CCCC-------CCcceEEEecCC
Q psy2847 68 DPDE-------EGNGEICLKDLI 83 (83)
Q Consensus 68 d~~~-------g~~Gei~~~~~~ 83 (83)
|++. ++.|||+++|+.
T Consensus 371 d~~~~~~~~~~~~~Gei~v~g~~ 393 (539)
T PRK07008 371 GDDGRELPWDGKAFGDLQVRGPW 393 (539)
T ss_pred CCCCCccCCCCCcceEEEEeCCc
Confidence 9762 246999999863
>PRK12476 putative fatty-acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.38 E-value=1.3e-12 Score=87.63 Aligned_cols=81 Identities=25% Similarity=0.332 Sum_probs=61.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c---CC---eEecccCccccccceeecCCCC-----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L---DI---AICEVFGMSECAGAHTVSAPDD----------------------- 49 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~---~~---~~~~~yG~tE~~~~~~~~~~~~----------------------- 49 (83)
+++++| +++||+++++++.+++ + +. .+++.||+||++..++....+.
T Consensus 316 ~l~~lr-~~~gg~~~~~~~~~~~~~~~~~~g~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 394 (612)
T PRK12476 316 DLSNVV-LIIGSEPVSIDAVTTFNKAFAPYGLPRTAFKPSYGIAEATLFVATIAPDAEPSVVYLDREQLGAGRAVRVAAD 394 (612)
T ss_pred chhHhe-EEecccCCCHHHHHHHHHHHHhcCCCccccccccchhhhheeeeccCCCCCceEEEEcHHHhhCCCeeecCCC
Confidence 467889 9999999999999887 3 33 4899999999875543321110
Q ss_pred ----cccCceecCcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 50 ----FKLDGVGRTIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 50 ----~~~~~~g~p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
.+.+++|+|+++++++|+|++ .++.|||+++|++
T Consensus 395 ~~~~~~~~~~G~~~~g~~v~ivd~~~g~~~~~g~~GEl~v~g~~ 438 (612)
T PRK12476 395 APNAVAHVSCGQVARSQWAVIVDPDTGAELPDGEVGEIWLHGDN 438 (612)
T ss_pred CCCcceeEeCCCcCCCCEEEEEeCCCCcCCCCCCEEEEEEcCCc
Confidence 012478999999999999966 3678999999974
>TIGR01217 ac_ac_CoA_syn acetoacetyl-CoA synthase
Back Show alignment and domain information
Probab=99.37 E-value=2.6e-12 Score=87.01 Aligned_cols=81 Identities=14% Similarity=0.210 Sum_probs=63.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c--CCeEecccCccccccceeec-CCCCcccCceecCcCCcEEEEECCC----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L--DIAICEVFGMSECAGAHTVS-APDDFKLDGVGRTIPGTQTKIVDPD----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~--~~~~~~~yG~tE~~~~~~~~-~~~~~~~~~~g~p~~~~~~~v~d~~----~ 71 (83)
++++||.+++||+++++++.+++ + +..+.+.||+||++...... +......+++|.|.++++++++|++ .
T Consensus 382 ~l~sLr~i~~gGe~l~~~~~~~~~~~~~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~ivd~~g~~~~ 461 (652)
T TIGR01217 382 DLSALQCVASTGSPLPPDGFRWVYDEIKADVWLASISGGTDICSCFAGANPTLPVHIGEIQAPGLGTAVQSWDPEGKPVT 461 (652)
T ss_pred ChhheeEEEeecCCCCHHHHHHHHHHhCCCceEEeccCHHHHhccccCCCCCCCCcCCccCCCcCCCceEEECCCCCCCC
Confidence 46799999999999999998887 3 35678999999975333222 2112345788999999999999987 3
Q ss_pred CCcceEEEecC
Q psy2847 72 EGNGEICLKDL 82 (83)
Q Consensus 72 g~~Gei~~~~~ 82 (83)
|+.|||++++|
T Consensus 462 g~~GEl~v~gp 472 (652)
T TIGR01217 462 GEVGELVCTNP 472 (652)
T ss_pred CCccEEEEecC
Confidence 68899999986
This enzyme catalyzes the first step of the mevalonate pathway of IPP biosynthesis. Most bacteria do not use this pathway, but rather the deoxyxylulose pathway.
>PLN02246 4-coumarate--CoA ligase
Back Show alignment and domain information
Probab=99.37 E-value=4.8e-12 Score=83.63 Aligned_cols=81 Identities=31% Similarity=0.521 Sum_probs=64.6
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCC-----CCcccCceecCcCCcEEEEECCC---
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAP-----DDFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~-----~~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++|.+++||+++++++.+++ + +..+++.||+||++.+++.... ...+.+++|+|+++++++++|++
T Consensus 297 ~~~lr~~~~gg~~l~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~ 376 (537)
T PLN02246 297 LSSIRMVLSGAAPLGKELEDAFRAKLPNAVLGQGYGMTEAGPVLAMCLAFAKEPFPVKSGSCGTVVRNAELKIVDPETGA 376 (537)
T ss_pred ccceeEEEEecCcCCHHHHHHHHHHcCCCeEeccccccccCcccccccccCCCCccccCCccccccCCcEEEEecCCCCC
Confidence 5689999999999999999888 4 6779999999999866543211 11345789999999999999854
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|++
T Consensus 377 ~~~~g~~Gel~v~g~~ 392 (537)
T PLN02246 377 SLPRNQPGEICIRGPQ 392 (537)
T ss_pred cCCCCCceEEEEECCc
Confidence 4678999999863
>PRK13391 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.37 E-value=4.8e-12 Score=83.11 Aligned_cols=80 Identities=23% Similarity=0.295 Sum_probs=64.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
+++++|.+++||+++++++.+++ ++..+++.||+||++.++...... ....+++|+|.++ .++++|++ .|
T Consensus 273 ~~~~l~~~~~gg~~~~~~~~~~~~~~~g~~v~~~YG~tE~~~~~~~~~~~~~~~~~~vG~~~~g-~~~i~d~~~~~~~~g 351 (511)
T PRK13391 273 DLSSLEVAIHAAAPCPPQVKEQMIDWWGPIIHEYYAATEGLGFTACDSEEWLAHPGTVGRAMFG-DLHILDDDGAELPPG 351 (511)
T ss_pred CccceeEEEEccCCCCHHHHHHHHHHcCCceeeeeccccccceEEecCccccccCCCcCCcccc-eEEEECCCCCCCCCC
Confidence 35789999999999999999888 677899999999998765543322 2456789999998 68898865 36
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||+++++
T Consensus 352 ~~Gel~~~g~ 361 (511)
T PRK13391 352 EPGTIWFEGG 361 (511)
T ss_pred CceEEEEecC
Confidence 7899999985
>PRK10946 entE enterobactin synthase subunit E; Provisional
Back Show alignment and domain information
Probab=99.37 E-value=5.3e-12 Score=83.53 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=63.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCc-CCcEEEEECCC-----CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTI-PGTQTKIVDPD-----EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~-~~~~~~v~d~~-----~g 72 (83)
++++|.+++||+++++++.+++ ++.++++.||+||+.......... .....++|+|+ ++..++++|++ .|
T Consensus 299 ~~~l~~v~~gg~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~p~~~~~~v~i~d~~~~~~~~g 378 (536)
T PRK10946 299 LASLKLLQVGGARLSETLARRIPAELGCQLQQVFGMAEGLVNYTRLDDSDERIFTTQGRPMSPDDEVWVADADGNPLPQG 378 (536)
T ss_pred ccceeEEEECCCCCCHHHHHHHHHhcCCeEEEeecccccceeeecCCCccccccccCCcccCCCceEEEECCCCCCCCCC
Confidence 4689999999999999999988 788999999999975333211111 13457899998 78999999875 47
Q ss_pred CcceEEEecCC
Q psy2847 73 GNGEICLKDLI 83 (83)
Q Consensus 73 ~~Gei~~~~~~ 83 (83)
+.|||+++|+.
T Consensus 379 ~~Gel~v~g~~ 389 (536)
T PRK10946 379 EVGRLMTRGPY 389 (536)
T ss_pred CccEEEEecCc
Confidence 88999999863
>TIGR03205 pimA dicarboxylate--CoA ligase PimA
Back Show alignment and domain information
Probab=99.37 E-value=3.3e-12 Score=84.42 Aligned_cols=81 Identities=22% Similarity=0.368 Sum_probs=64.2
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEEC--CC-----C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVD--PD-----E 71 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d--~~-----~ 71 (83)
++++|.+++||+++++++.+++ ++.++++.||+||++..+....... ...+++|+|++++++++.+ ++ .
T Consensus 311 ~~~l~~i~~gg~~~~~~~~~~~~~~~~~~~~~~YG~TE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~v~~~d~~~~~~~~ 390 (541)
T TIGR03205 311 LSSLATIGSGGAPLPVEVANFFERKTGLKLKSGWGMTETCSPGTGHPPEGPDKPGSIGLMLPGIELDVVSLDDPTKVLPP 390 (541)
T ss_pred ccccceEEEccccCCHHHHHHHHHHhCCCeecccccccCCcccccCCCCCCCCCCCcceeccCceeEEEecCCCCccCCC
Confidence 5689999999999999998887 6888999999999987665443322 3456899999999988764 32 3
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
++.|||++++++
T Consensus 391 g~~Gel~v~~~~ 402 (541)
T TIGR03205 391 GEVGELRIRGPN 402 (541)
T ss_pred CCeeEEEEecCC
Confidence 678999999863
PimA, a member of a large family of acyl-CoA ligases, is found in a characteristic operon pimFABCDE for the metabolism of pimelate and related compounds. It is found, so far, in Bradyrhizobium japonicum and several strains of Rhodopseudomonas palustris. PimA from R. palustris was shown to be active as a CoA ligase for C(7) to C(14) dicarboxylates and fatty acids.
>PRK06710 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.36 E-value=2.3e-12 Score=85.54 Aligned_cols=80 Identities=21% Similarity=0.338 Sum_probs=64.3
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCC-CCcccCceecCcCCcEEEEECCC------CC
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPD------EE 72 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~g~p~~~~~~~v~d~~------~g 72 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+..... .....+++|+|+++..++++|++ .|
T Consensus 322 ~~~lr~v~~gg~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~~~~g 401 (563)
T PRK06710 322 ISSIRACISGSAPLPVEVQEKFETVTGGKLVEGYGLTESSPVTHSNFLWEKRVPGSIGVPWPDTEAMIMSLETGEALPPG 401 (563)
T ss_pred hhhhhheeeCCCcCCHHHHHHHHHhhCCCEecccccccCccccccCcccccccCCccCCCCCCCeEEEEECCCCccCCCC
Confidence 5689999999999999999888 67889999999999865433221 11345689999999999999854 36
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
+.|||+++++
T Consensus 402 ~~Gel~v~g~ 411 (563)
T PRK06710 402 EIGEIVVKGP 411 (563)
T ss_pred CceEEEEecC
Confidence 7899999986
>TIGR02275 DHB_AMP_lig 2,3-dihydroxybenzoate-AMP ligase
Back Show alignment and domain information
Probab=99.36 E-value=5.9e-12 Score=83.03 Aligned_cols=82 Identities=22% Similarity=0.336 Sum_probs=63.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecC-CCCcccCceecCc-CCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSA-PDDFKLDGVGRTI-PGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~-~~~~~~~~~g~p~-~~~~~~v~d~~-----~ 71 (83)
+++++|.+++||+++++++.+++ ++..+++.||+||+........ ......+++|+|+ ++..++++|++ .
T Consensus 297 ~~~~lr~~~~gG~~l~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~v~i~d~~g~~~~~ 376 (527)
T TIGR02275 297 DLSSLKLLQVGGAKFSEAAARRVPAVFGCQLQQVFGMAEGLVNYTRLDDPAEIIFTTQGRPMSPDDEVRVVDDHGNPVAP 376 (527)
T ss_pred CccceEEEEEcCCCCCHHHHHHHHHHhCCeEEeeeccCccCccccCCCCccccccccCCCCCCCCceEEEECCCCCCCCC
Confidence 35689999999999999999988 7889999999999653322111 1113346789998 47899999876 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++|++
T Consensus 377 g~~Gei~v~g~~ 388 (527)
T TIGR02275 377 GETGMLLTRGPY 388 (527)
T ss_pred CCceEEEecCCc
Confidence 788999999863
Proteins in this family belong to the AMP-binding enzyme family (pfam00501). Members activate 2,3-dihydroxybenzoate (DHB) by ligation of AMP from ATP with the release of pyrophosphate; many are involved in synthesis of siderophores such as enterobactin, vibriobactin, vulnibactin, etc. The most closely related proteine believed to differ in function activates salicylate rather than DHB.
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.35 E-value=3.7e-12 Score=98.32 Aligned_cols=81 Identities=22% Similarity=0.333 Sum_probs=66.2
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCC--CCcccCceecCcCCcEEEEECCC-----C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAP--DDFKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~--~~~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
+++||.+++||+++++++.++| + +..++|.||+||++..+..... ......++|+|+++++++|+|++ .
T Consensus 1387 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~i~d~~~~~vp~ 1466 (4334)
T PRK05691 1387 CTSLRRLFSGGEALPAELRNRVLQRLPQVQLHNRYGPTETAINVTHWQCQAEDGERSPIGRPLGNVLCRVLDAELNLLPP 1466 (4334)
T ss_pred CCcccEEEEeecCCCHHHHHHHHHhCCCcEEEeCCCcChheeeeeeeecccccCCCCcccceeCCCEEEEECCCCCCCCC
Confidence 5789999999999999999988 3 6789999999999865543221 22345689999999999999976 4
Q ss_pred CCcceEEEecCC
Q psy2847 72 EGNGEICLKDLI 83 (83)
Q Consensus 72 g~~Gei~~~~~~ 83 (83)
|+.|||+++|+.
T Consensus 1467 G~~GEL~i~G~~ 1478 (4334)
T PRK05691 1467 GVAGELCIGGAG 1478 (4334)
T ss_pred CCceEEEecCcc
Confidence 788999999873
>PRK07786 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.34 E-value=8e-12 Score=82.72 Aligned_cols=78 Identities=31% Similarity=0.413 Sum_probs=64.1
Q ss_pred ceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----CCC
Q psy2847 5 RCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----EEG 73 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~g~ 73 (83)
++|.+++||+++++++++++ + +..+++.||+||++.+.+....+. .+.+++|+|++++.++++|++ .++
T Consensus 291 ~lr~i~~gg~~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~d~~~~~~~~g~ 370 (542)
T PRK07786 291 ALRVLSWGAAPASDTLLRQMAATFPEAQILAAFGQTEMSPVTCMLLGEDAIRKLGSVGKVIPTVAARVVDENMNDVPVGE 370 (542)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccceEecCcccccccCCCccccCCCceEEEECCCCCCCcCCC
Confidence 68999999999999998888 4 788999999999987655433221 345789999999999999976 367
Q ss_pred cceEEEecC
Q psy2847 74 NGEICLKDL 82 (83)
Q Consensus 74 ~Gei~~~~~ 82 (83)
.|||+++|+
T Consensus 371 ~Gel~v~g~ 379 (542)
T PRK07786 371 VGEIVYRAP 379 (542)
T ss_pred ceEEEEECh
Confidence 899999986
>TIGR01734 D-ala-DACP-lig D-alanine--poly(phosphoribitol) ligase, subunit 1
Back Show alignment and domain information
Probab=99.34 E-value=7.6e-12 Score=81.75 Aligned_cols=81 Identities=17% Similarity=0.197 Sum_probs=64.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC-----CcccCceecCcCCcEEEEECCC---
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~-----~~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++|.++++|+++++++.+++ + +..+++.||+||++..+...... .....++|.|.++++++++|++
T Consensus 257 ~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~vg~~~~~~~~~i~~~~~~~ 336 (502)
T TIGR01734 257 YPHLTHFLFCGEELPVKTAKALLERFPKATIYNTYGPTEATVAVTSVKITQEILDQYPRLPIGFAKPDMNLFIMDEEGEP 336 (502)
T ss_pred CCcccEEEEcCCcCCHHHHHHHHHHCCCcEEEeCccCCcceEEEEEEEccccccccCCccccccccCCCEEEEECCCCCC
Confidence 4689999999999999999887 3 78899999999987544322111 1234579999999999999976
Q ss_pred --CCCcceEEEecCC
Q psy2847 71 --EEGNGEICLKDLI 83 (83)
Q Consensus 71 --~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|++
T Consensus 337 ~~~g~~Gel~v~g~~ 351 (502)
T TIGR01734 337 LPEGEKGEIVIVGPS 351 (502)
T ss_pred CCCCCeeEEEEcccc
Confidence 4678999999863
This model represents the enzyme (also called D-alanine-D-alanyl carrier protein ligase) which activates D-alanine as an adenylate via the reaction D-ala + ATP - D-ala-AMP + PPi, and further catalyzes the condensation of the amino acid adenylate with the D-alanyl carrier protein (D-ala-ACP). The D-alanine is then further transferred to teichoic acid in the biosynthesis of lipoteichoic acid (LTA) and wall teichoic acid (WTA) in gram positive bacteria, both polysacchatides.
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase
Back Show alignment and domain information
Probab=99.33 E-value=6.3e-12 Score=90.40 Aligned_cols=81 Identities=12% Similarity=0.118 Sum_probs=64.0
Q ss_pred CCceEEEEEecCCCCHHHHHHh----cCCeEecccCccccccceeecCCCC-----------cccCceecCcCCcEEEEE
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF----LDIAICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIV 67 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~----~~~~~~~~yG~tE~~~~~~~~~~~~-----------~~~~~~g~p~~~~~~~v~ 67 (83)
++++|.+++||+++++...+++ .+..+++.||+||++..++...... ....++|+|+++++++|+
T Consensus 528 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~iv 607 (1389)
T TIGR03443 528 IPSLHHAFFVGDILTKRDCLRLQTLAENVCIVNMYGTTETQRAVSYFEIPSRSSDSTFLKNLKDVMPAGKGMKNVQLLVV 607 (1389)
T ss_pred CCCccEEEEecccCCHHHHHHHHHhCCCCEEEECccCCccceeEEEEEccccccccchhhcccCcCcCCCccCCCEEEEE
Confidence 5789999999999999988876 4788999999999976554322110 123568999999999999
Q ss_pred CCC-------CCCcceEEEecCC
Q psy2847 68 DPD-------EEGNGEICLKDLI 83 (83)
Q Consensus 68 d~~-------~g~~Gei~~~~~~ 83 (83)
|++ .|+.|||+++||.
T Consensus 608 d~~~~~~~~~~G~~GEL~i~G~~ 630 (1389)
T TIGR03443 608 NRNDRTQTCGVGEVGEIYVRAGG 630 (1389)
T ss_pred CCccCCCcCCCCCceEEEecccc
Confidence 864 3788999999974
Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
>PRK06018 putative acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=99.32 E-value=1.2e-11 Score=81.86 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=64.3
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC-----------cccCceecCcCCcEEEEEC
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPGTQTKIVD 68 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~-----------~~~~~~g~p~~~~~~~v~d 68 (83)
+++++|.++++|+++++++.++| ++.++++.||+||++.++....... ....++|+|.++++++++|
T Consensus 292 ~~~~lr~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~g~~i~v~d 371 (542)
T PRK06018 292 KLPHLKMVVCGGSAMPRSMIKAFEDMGVEVRHAWGMTEMSPLGTLAALKPPFSKLPGDARLDVLQKQGYPPFGVEMKITD 371 (542)
T ss_pred CcccceEEEEcCCCCCHHHHHHHHHhCCCeEeeecccccCcccccccCccccccCCchhhhhccccCCCCCCCcEEEEEC
Confidence 35789999999999999999988 7889999999999987654331110 1235789999999999999
Q ss_pred CCC-------CCcceEEEecCC
Q psy2847 69 PDE-------EGNGEICLKDLI 83 (83)
Q Consensus 69 ~~~-------g~~Gei~~~~~~ 83 (83)
++. +..|||+++|++
T Consensus 372 ~~~~~~~~~~~~~Gel~i~g~~ 393 (542)
T PRK06018 372 DAGKELPWDGKTFGRLKVRGPA 393 (542)
T ss_pred CCCCCCCCCCCceeEEEEecCC
Confidence 762 246999999863
>PRK12467 peptide synthase; Provisional
Back Show alignment and domain information
Probab=99.31 E-value=9.5e-12 Score=95.79 Aligned_cols=81 Identities=23% Similarity=0.212 Sum_probs=65.4
Q ss_pred CCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC---C--cccCceecCcCCcEEEEECCC---
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD---D--FKLDGVGRTIPGTQTKIVDPD--- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~---~--~~~~~~g~p~~~~~~~v~d~~--- 70 (83)
++++|.+++||+++++++.++| + +..++|.||+||++..++..... . ....++|+|+++++++|+|++
T Consensus 1833 ~~~lr~v~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~t~~~~~~~~~~~~~~~~iG~p~~~~~~~vld~~~~~ 1912 (3956)
T PRK12467 1833 PLSLRRVVCGGEALEVEALRPWLERLPDTGLFNLYGPTETAVDVTHWTCRRKDLEGRDSVPIGQPIANLSTYILDASLNP 1912 (3956)
T ss_pred CCCceEEEEccccCCHHHHHHHHHhCCCCeEEeCccCCcCEEeEEEEeccccccccCCCCCcccccCCCEEEEECCCCCC
Confidence 5789999999999999999888 3 57799999999998655433221 1 234679999999999999976
Q ss_pred --CCCcceEEEecCC
Q psy2847 71 --EEGNGEICLKDLI 83 (83)
Q Consensus 71 --~g~~Gei~~~~~~ 83 (83)
.|..|||+++|+.
T Consensus 1913 vp~G~~GEl~i~G~~ 1927 (3956)
T PRK12467 1913 VPIGVAGELYLGGVG 1927 (3956)
T ss_pred CCCCCceEEEecccc
Confidence 4788999999863
>TIGR01923 menE O-succinylbenzoate-CoA ligase
Back Show alignment and domain information
Probab=99.30 E-value=1.6e-11 Score=78.92 Aligned_cols=79 Identities=30% Similarity=0.451 Sum_probs=62.0
Q ss_pred CceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC-cccCceecCcCCcEEEEECCCCCCcceEEEe
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD-FKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 80 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~-~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~ 80 (83)
+++|.++++|+++++++.+++ .+..+++.||+||++..+.....+. .....+|+|++++++++.+++.++.|||+++
T Consensus 219 ~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~Gel~v~ 298 (436)
T TIGR01923 219 ENLRKILLGGSAIPAPLIEEAQQYGLPIYLSYGMTETCSQVTTATPEMLHARPDVGRPLAGREIKIKVDNKEGHGEIMVK 298 (436)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCCceeeEecCCccchhccCcCccccccccCCCccCCCcEEEEEeCCCCCceEEEEE
Confidence 479999999999999999888 7889999999999987654433222 2222489999999999944444578999999
Q ss_pred cC
Q psy2847 81 DL 82 (83)
Q Consensus 81 ~~ 82 (83)
++
T Consensus 299 ~~ 300 (436)
T TIGR01923 299 GA 300 (436)
T ss_pred CC
Confidence 86
This model represents an enzyme, O-succinylbenzoate-CoA ligase, which is involved in the fourth step of the menaquinone biosynthesis pathway. O-succinylbenzoate-CoA ligase, together with menB - naphtoate synthase, take 2-succinylbenzoate and convert it into 1,4-di-hydroxy-2- naphtoate.
>PRK04813 D-alanine--poly(phosphoribitol) ligase subunit 1; Provisional
Back Show alignment and domain information
Probab=99.30 E-value=2.1e-11 Score=79.60 Aligned_cols=81 Identities=19% Similarity=0.252 Sum_probs=64.0
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCC-----CcccCceecCcCCcEEEEECCC--
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPD-----DFKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~-----~~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
+++++|.++++|+++++.+.+++ + +..+++.||+||++..+...... .....++|+|.++++++++|++
T Consensus 258 ~~~~l~~i~~~G~~l~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~d~~~~ 337 (503)
T PRK04813 258 HLPNLTHFLFCGEELPHKTAKKLLERFPSATIYNTYGPTEATVAVTSIEITDEMLDQYKRLPIGYAKPDSPLLIIDEEGT 337 (503)
T ss_pred cCCCceEEEEecCcCCHHHHHHHHHHCCCceEEeCcccchheeEEEEEEecccccccCCCCcccccCCCCEEEEECCCCC
Confidence 35789999999999999999888 4 67899999999987544332111 1234568999999999999876
Q ss_pred ---CCCcceEEEecC
Q psy2847 71 ---EEGNGEICLKDL 82 (83)
Q Consensus 71 ---~g~~Gei~~~~~ 82 (83)
.++.|||+++++
T Consensus 338 ~~~~g~~Gel~v~~~ 352 (503)
T PRK04813 338 KLPDGEQGEIVISGP 352 (503)
T ss_pred CCCCCCceEEEEecc
Confidence 367899999986
>PRK05852 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.30 E-value=1.5e-11 Score=81.26 Aligned_cols=81 Identities=22% Similarity=0.307 Sum_probs=61.9
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-----CcccCceecC--cCCcEEEEECCC--
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-----DFKLDGVGRT--IPGTQTKIVDPD-- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-----~~~~~~~g~p--~~~~~~~v~d~~-- 70 (83)
++++|.++++|+++++++.+++ ++..+++.||+||++..++..... .....+.|.+ .++++++++|++
T Consensus 294 ~~~lr~i~~~G~~~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~g~~g~~~g~~~~i~d~~g~ 373 (534)
T PRK05852 294 PAALRFIRSCSAPLTAETAQALQTEFAAPVVCAFGMTEATHQVTTTQIEGIGQTENPVVSTGLVGRSTGAQIRIVGSDGL 373 (534)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHhCCChhhccCccccchhhhcCCccccccccCcccccccCCCCCCCeEEEECCCCC
Confidence 5689999999999999999888 788999999999998765543221 1111233433 689999999976
Q ss_pred ---CCCcceEEEecCC
Q psy2847 71 ---EEGNGEICLKDLI 83 (83)
Q Consensus 71 ---~g~~Gei~~~~~~ 83 (83)
.++.|||+++++.
T Consensus 374 ~~~~g~~Gel~v~g~~ 389 (534)
T PRK05852 374 PLPAGAVGEVWLRGTT 389 (534)
T ss_pred CCCCCCceEEEEecCc
Confidence 4678999999863
>PLN03052 acetate--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.29 E-value=1.9e-11 Score=84.01 Aligned_cols=81 Identities=20% Similarity=0.197 Sum_probs=62.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCC-CCcccCceecCcCCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAP-DDFKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~-~~~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
++++||.++++|++++++..+++ ++ .++++.||+||+++.+..... .....+++|.|.++++++|+|++ .
T Consensus 469 dlssLr~i~s~Ge~l~~~~~~~~~~~~~~~~i~~~yG~TE~~~~~~~~~~~~~~~~g~~g~p~~g~~v~v~d~~g~~v~~ 548 (728)
T PLN03052 469 DWSSIRCFGSTGEASSVDDYLWLMSRAGYKPIIEYCGGTELGGGFVTGSLLQPQAFAAFSTPAMGCKLFILDDSGNPYPD 548 (728)
T ss_pred ChhheeEEEecCCCCCHHHHHHHHHhcCCCCeEeeccChhhCcccccCCCCCCCCCCccccCCCCceEEEECCCCCCCCC
Confidence 56899999999999999887766 34 478999999999765432222 12346789999999999999976 2
Q ss_pred C--CcceEEEecC
Q psy2847 72 E--GNGEICLKDL 82 (83)
Q Consensus 72 g--~~Gei~~~~~ 82 (83)
| +.|||+++++
T Consensus 549 g~~~~GEL~v~~~ 561 (728)
T PLN03052 549 DAPCTGELALFPL 561 (728)
T ss_pred CCCceEEEEEeCC
Confidence 3 3599999753
>PRK05691 peptide synthase; Validated
Back Show alignment and domain information
Probab=99.29 E-value=1.6e-11 Score=94.96 Aligned_cols=81 Identities=22% Similarity=0.320 Sum_probs=66.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh----cCCeEecccCccccccceeecCCCC----cccCceecCcCCcEEEEECCC----
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF----LDIAICEVFGMSECAGAHTVSAPDD----FKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~----~~~~~~~~yG~tE~~~~~~~~~~~~----~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++||.+++||+++++++.++| .+..++|.||+||++..++...... .....+|+|++++++.|+|++
T Consensus 3982 ~~~lr~~~~gGe~l~~~~~~~~~~~~~~~~l~n~YG~TE~t~~~~~~~~~~~~~~~~~~~iG~p~~~~~~~v~d~~~~~~ 4061 (4334)
T PRK05691 3982 LDGLRWMLPTGEAMPPELARQWLQRYPQIGLVNAYGPAECSDDVAFFRVDLASTRGSYLPIGSPTDNNRLYLLDEALELV 4061 (4334)
T ss_pred CCCceEEEecCCcCCHHHHHHHHHhCCCCeEEeCccCccceeEEEEEEcccccccCCcCCCCCccCCCEEEEECCCCCCC
Confidence 5789999999999999999988 4678999999999987665433221 223469999999999999976
Q ss_pred -CCCcceEEEecCC
Q psy2847 71 -EEGNGEICLKDLI 83 (83)
Q Consensus 71 -~g~~Gei~~~~~~ 83 (83)
.|..|||+++|+.
T Consensus 4062 p~g~~GEL~i~G~~ 4075 (4334)
T PRK05691 4062 PLGAVGELCVAGTG 4075 (4334)
T ss_pred CCCCceEEEEeccc
Confidence 4789999999973
>KOG1177|consensus
Back Show alignment and domain information
Probab=99.28 E-value=3.8e-12 Score=83.45 Aligned_cols=82 Identities=24% Similarity=0.408 Sum_probs=68.6
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCC---cccCceecCcCCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDD---FKLDGVGRTIPGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~---~~~~~~g~p~~~~~~~v~d~~---- 70 (83)
+++++|.++.||+|+++++++++ .+. .+...||+||+++..++...++ .+..++|+.+++.+..++|.+
T Consensus 348 ~~s~lr~~vigGa~~s~eLlk~iv~~~~m~~i~v~YG~TEts~v~~~~~~~D~~~~~~ksVG~~m~h~Ea~iv~~~g~~v 427 (596)
T KOG1177|consen 348 DLSSLRKGVIGGAPVSPELLKLIVNQMNMKDIAVAYGLTETSPVLFMSLLGDPPEERIKSVGHLMDHYEAAIVDKDGSEV 427 (596)
T ss_pred chhhhhhheeCCCCCCHHHHHHHHHhhCceeeEEEeeccccCcceeeecCCCCHHHHHhhhhhcccccccccccCCCCcc
Confidence 46789999999999999999998 443 4888999999998777665544 556789999999999999976
Q ss_pred -CCCcceEEEecCC
Q psy2847 71 -EEGNGEICLKDLI 83 (83)
Q Consensus 71 -~g~~Gei~~~~~~ 83 (83)
-+..|||++||.+
T Consensus 428 ~~~~~Gel~iRGY~ 441 (596)
T KOG1177|consen 428 PLGTKGELLIRGYS 441 (596)
T ss_pred ccCCCceEEEEech
Confidence 2678999999863
>PRK07768 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.26 E-value=3.3e-11 Score=79.71 Aligned_cols=81 Identities=30% Similarity=0.450 Sum_probs=62.1
Q ss_pred CCCceEEEEEecCCCCHHHHHHh------cCC---eEecccCccccccceeecCCC------------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF------LDI---AICEVFGMSECAGAHTVSAPD------------------------ 48 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~------~~~---~~~~~yG~tE~~~~~~~~~~~------------------------ 48 (83)
+++++|.++++|+++++++.+++ ++. .+++.||+||++..+......
T Consensus 274 ~~~~lr~~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (545)
T PRK07768 274 DLSSLRFALNGAEPIDPADVEDLLDAGARFGLRPEAILPAYGMAEATLAVSFSPCGAGLVVDEVDADLLAALRRAVPATK 353 (545)
T ss_pred CchheeeEEeccCCCCHHHHHHHHHHHHhcCCCcccccccccccccceEEEccCCCCCcceeeechhHhhccCceeccCC
Confidence 45689999999999999998876 233 489999999997654432211
Q ss_pred --CcccCceecCcCCcEEEEECCC-----CCCcceEEEecC
Q psy2847 49 --DFKLDGVGRTIPGTQTKIVDPD-----EEGNGEICLKDL 82 (83)
Q Consensus 49 --~~~~~~~g~p~~~~~~~v~d~~-----~g~~Gei~~~~~ 82 (83)
....+++|+|+++++++++|++ .++.|||+++++
T Consensus 354 ~~~~~~~~~G~~~~g~~~~i~~~~~~~~~~g~~Gel~v~~~ 394 (545)
T PRK07768 354 GNTRRLATLGPPLPGLEVRVVDEDGQVLPPRGVGVIELRGE 394 (545)
T ss_pred CCcceEEeccCCCCCCEEEEECCCCCCCCCCCEEEEEEccC
Confidence 0123578999999999999966 467899999985
>PRK09192 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.22 E-value=3e-11 Score=80.66 Aligned_cols=82 Identities=24% Similarity=0.385 Sum_probs=62.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c---C---CeEecccCccccccceeecCCCC-----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L---D---IAICEVFGMSECAGAHTVSAPDD----------------------- 49 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~---~---~~~~~~yG~tE~~~~~~~~~~~~----------------------- 49 (83)
+++++|.+++||+++++++.+++ + + ..+++.||+||++..........
T Consensus 297 ~l~~lr~~~~gG~~l~~~~~~~~~~~~~~~g~~~~~~~~~yG~TE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 376 (579)
T PRK09192 297 DLSCWRVAGIGADMIRPDVLHQFAEAFAPAGFDDKAFMPSYGLAEATLAVSFSPLGSGIVVEEVDRDRLEYQGKAVAPGA 376 (579)
T ss_pred chhhhheeEecCccCCHHHHHHHHHHHHhcCCChhhcccccccccceeEEeccCCCCCceEEEEcHHHhcCCceeeccCC
Confidence 46789999999999999998887 2 1 24889999999976554332210
Q ss_pred -----cccCceecCcCCcEEEEECCC-----CCCcceEEEecCC
Q psy2847 50 -----FKLDGVGRTIPGTQTKIVDPD-----EEGNGEICLKDLI 83 (83)
Q Consensus 50 -----~~~~~~g~p~~~~~~~v~d~~-----~g~~Gei~~~~~~ 83 (83)
....++|+|+++++++++|++ .++.|||+++|++
T Consensus 377 ~~~~~~~~~~vG~~~p~~~v~i~d~~~~~~~~g~~Gel~i~g~~ 420 (579)
T PRK09192 377 ETRRVRTFVNCGKALPGHEIEIRNEAGMPLPERVVGHICVRGPS 420 (579)
T ss_pred CCccceeEeecCCcCCCcEEEEECCCCCCCCCCCEEEEEecCCc
Confidence 012468999999999999976 3578999999863
>PRK05620 long-chain-fatty-acid--CoA ligase; Validated
Back Show alignment and domain information
Probab=99.20 E-value=1.4e-10 Score=77.36 Aligned_cols=79 Identities=22% Similarity=0.318 Sum_probs=62.1
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCC--------cccCceecCcCCcEEEEECCC--
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDD--------FKLDGVGRTIPGTQTKIVDPD-- 70 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~--------~~~~~~g~p~~~~~~~v~d~~-- 70 (83)
.++|.++++|++++++++++| ++.++++.||+||++..+....... ....++|++.++++++++|++
T Consensus 298 ~~l~~~~~gG~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~~~g~~ 377 (576)
T PRK05620 298 MSLQEIYVGGSAVPPILIKAWEERYGVDVVHVWGMTETSPVGTVARPPSGVSGEARWAYRVSQGRFPASLEYRIVNDGQV 377 (576)
T ss_pred CceeEEEEcCCCCCHHHHHHHHHHhCCceeeeccccccccceeeeccCCccccccccccccccCCcCCceeEEEecCCcc
Confidence 479999999999999999988 6888999999999987654432211 112467899999999999863
Q ss_pred ----CCCcceEEEecC
Q psy2847 71 ----EEGNGEICLKDL 82 (83)
Q Consensus 71 ----~g~~Gei~~~~~ 82 (83)
.++.|||+++|+
T Consensus 378 ~~~~~~~~Gel~v~g~ 393 (576)
T PRK05620 378 MESTDRNEGEIQVRGN 393 (576)
T ss_pred ccCCCCCceEEEEEcC
Confidence 246799999986
>PRK09029 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.16 E-value=2.1e-10 Score=74.58 Aligned_cols=71 Identities=35% Similarity=0.501 Sum_probs=58.4
Q ss_pred CceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCCcceEEEec
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKD 81 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~~ 81 (83)
.++|.+++||+++++.+.+++ ++.++++.||+||++........+ ...++|+|++++++++.+ |||+++|
T Consensus 240 ~~l~~i~~gG~~~~~~~~~~~~~~g~~~~~~YG~tE~~~~~~~~~~~--~~~~~G~~~~~~~~~i~~------gel~v~g 311 (458)
T PRK09029 240 LSLKAVLLGGAAIPVELTEQAEQQGIRCWCGYGLTEMASTVCAKRAD--GLAGVGSPLPGREVKLVD------GEIWLRG 311 (458)
T ss_pred CcceEEEECCCCCCHHHHHHHHHcCCcEeccccccccCcceeccCCC--CCCCCCCCCCCCEEEEeC------CEEEEec
Confidence 368999999999999999888 788899999999998654433322 234699999999999987 8998887
Q ss_pred C
Q psy2847 82 L 82 (83)
Q Consensus 82 ~ 82 (83)
+
T Consensus 312 ~ 312 (458)
T PRK09029 312 A 312 (458)
T ss_pred C
Confidence 6
>PRK06155 crotonobetaine/carnitine-CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.15 E-value=3.2e-10 Score=75.33 Aligned_cols=77 Identities=23% Similarity=0.429 Sum_probs=60.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC-----CCCc
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD-----EEGN 74 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~-----~g~~ 74 (83)
.+++|.++.+| .++++.+++ ++.++++.||+||++.++.... ...+.+++|.|.++++++++|++ .++.
T Consensus 293 ~~~l~~~~~g~--~~~~~~~~~~~~~~~~v~~~YG~tE~~~~~~~~~-~~~~~~~vG~~~~~~~~~i~d~~~~~~~~g~~ 369 (542)
T PRK06155 293 AHRVRVALGPG--VPAALHAAFRERFGVDLLDGYGSTETNFVIAVTH-GSQRPGSMGRLAPGFEARVVDEHDQELPDGEP 369 (542)
T ss_pred cCceEEEEEcC--CCHHHHHHHHHHcCCCEEeeecccccCccccCCC-CCCCCCCcCccCCCceEEEECCCCCCCCCCCc
Confidence 35788777665 467777777 7889999999999987655432 23456789999999999999876 3678
Q ss_pred ceEEEecC
Q psy2847 75 GEICLKDL 82 (83)
Q Consensus 75 Gei~~~~~ 82 (83)
|||+++++
T Consensus 370 Gei~v~~~ 377 (542)
T PRK06155 370 GELLLRAD 377 (542)
T ss_pred eEEEEecC
Confidence 99999986
>COG1021 EntE Peptide arylation enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=99.14 E-value=6.2e-11 Score=76.72 Aligned_cols=81 Identities=28% Similarity=0.454 Sum_probs=66.2
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---cCCeEecccCcccccccee-ecCCCCcccCceecCc-CCcEEEEECCC-----C
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHT-VSAPDDFKLDGVGRTI-PGTQTKIVDPD-----E 71 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~-~~~~~~~~~~~~g~p~-~~~~~~v~d~~-----~ 71 (83)
+++|||.+-.||+.++++..+++ +++.+-++|||.|.-...+ +.++......+.|+|+ |.-+++|+|+| +
T Consensus 303 ~LsSLrllQVGGarl~~~~Arrv~~~lgC~LQQVFGMAEGLvnyTRLDDp~E~i~~TQGrPlsP~DEvrvvD~dg~pv~p 382 (542)
T COG1021 303 DLSSLRLLQVGGARLSATLARRVPAVLGCQLQQVFGMAEGLVNYTRLDDPPEIIIHTQGRPLSPDDEVRVVDADGNPVAP 382 (542)
T ss_pred CchheeEEeecCcccCHHHHhhchhhhCchHHHHhhhhhhhhcccccCCchHheeecCCCcCCCcceeEEecCCCCCCCC
Confidence 58999999999999999999999 8999999999999643222 1222225567899996 67789999987 5
Q ss_pred CCcceEEEecC
Q psy2847 72 EGNGEICLKDL 82 (83)
Q Consensus 72 g~~Gei~~~~~ 82 (83)
||.|+|..|||
T Consensus 383 GE~G~LltRGP 393 (542)
T COG1021 383 GEVGELLTRGP 393 (542)
T ss_pred CCcceeeecCC
Confidence 89999999998
>PRK08008 caiC putative crotonobetaine/carnitine-CoA ligase; Validated
Back Show alignment and domain information
Probab=99.13 E-value=4.5e-10 Score=73.85 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=59.3
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCC-CcccCceecCcCCcEEEEECCC-----CCCc
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPD-DFKLDGVGRTIPGTQTKIVDPD-----EEGN 74 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~-~~~~~~~g~p~~~~~~~v~d~~-----~g~~ 74 (83)
.++|.++++ .+++++..+++ ++..+++.||+||++..+...... .....++|+|+++++++++|++ .|+.
T Consensus 288 ~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~G~~~~g~~~~i~d~~~~~~~~g~~ 366 (517)
T PRK08008 288 HCLREVMFY-LNLSDQEKDAFEERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRPGFCYEAEIRDDHNRPLPAGEI 366 (517)
T ss_pred ccceeeEEe-cCCCHHHHHHHHHHhCCeEEeeccccccccccccCCccccccCCccccCCCCcEEEEECCCCCCCCCCCc
Confidence 457777775 47888888777 788999999999997654433222 2445689999999999999976 4678
Q ss_pred ceEEEec
Q psy2847 75 GEICLKD 81 (83)
Q Consensus 75 Gei~~~~ 81 (83)
|||++++
T Consensus 367 Gel~v~g 373 (517)
T PRK08008 367 GEICIKG 373 (517)
T ss_pred ceEEEeC
Confidence 9999997
>PRK07824 O-succinylbenzoic acid--CoA ligase; Provisional
Back Show alignment and domain information
Probab=99.10 E-value=3.8e-10 Score=71.44 Aligned_cols=64 Identities=23% Similarity=0.366 Sum_probs=53.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCCcceEEEe
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLK 80 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~ 80 (83)
++++|.+++||+++++++.+++ ++..+++.||+||++..+. ..|+|++++++++.| |||+++
T Consensus 150 ~~~l~~i~~gG~~l~~~~~~~~~~~~~~v~~~YG~TE~~~~~~----------~~G~~~~g~~v~i~~------Gei~v~ 213 (358)
T PRK07824 150 LAELDAVLVGGGPAPAPVLDAAAAAGINVVRTYGMSETSGGCV----------YDGVPLDGVRVRVED------GRIALG 213 (358)
T ss_pred cccceEEEECCCCCCHHHHHHHHhcCCcEEecccCCccCCCcC----------cCceeCCCCEEEecC------CEEEEe
Confidence 5689999999999999999888 7888999999999865321 258899999999854 888888
Q ss_pred cC
Q psy2847 81 DL 82 (83)
Q Consensus 81 ~~ 82 (83)
|+
T Consensus 214 g~ 215 (358)
T PRK07824 214 GP 215 (358)
T ss_pred cC
Confidence 76
>PRK08308 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.07 E-value=7.3e-10 Score=71.40 Aligned_cols=74 Identities=14% Similarity=0.161 Sum_probs=58.4
Q ss_pred ceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCCCCCcceEEEec
Q psy2847 5 RCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPDEEGNGEICLKD 81 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~~g~~Gei~~~~ 81 (83)
+++.++++|+++++++.+++ ...++++.||+||++.+.... .....+.+|+|++++++++.+. .++.|||++++
T Consensus 213 ~l~~~~~~G~~l~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~--~~~~~~~~G~p~~~~~~~~~~~-~~~~gel~v~~ 288 (414)
T PRK08308 213 QFHAVMTSGTPLPEAWFYKLRERTTYMMQQYGCSEAGCVSICP--DMKSHLDLGNPLPHVSVSAGSD-ENAPEEIVVKM 288 (414)
T ss_pred cccEEEEccCCCCHHHHHHHHHhCChhhhccCccccCCeeecC--CCCCCCccCccCCCeEEEEecC-CCCCceEEEEc
Confidence 68889999999999999988 556899999999998644322 1234567999999999998753 35678998875
>KOG1175|consensus
Back Show alignment and domain information
Probab=99.07 E-value=5.7e-10 Score=75.50 Aligned_cols=80 Identities=29% Similarity=0.487 Sum_probs=67.7
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCC--cccCceecCcCCcEEEEECCC-----C
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDD--FKLDGVGRTIPGTQTKIVDPD-----E 71 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~--~~~~~~g~p~~~~~~~v~d~~-----~ 71 (83)
+++||++.++|+|+.++..+++ ++. ++.+.||+||+++.+....... .++++.+.|.+++.+.++|++ +
T Consensus 358 ~~sLk~~~S~Gepi~~~~~ew~~~~~~~~pv~e~~~qtEtG~~~i~~~~g~~p~~pg~~~~p~~g~~v~i~de~g~~~~~ 437 (626)
T KOG1175|consen 358 LKSLRTCGSVGEPINPEAWEWWKRVTGLDPIYETYGQTETGGICITPKPGKLPIKPGSAGKPFPGYDVQILDENGNELPP 437 (626)
T ss_pred cceEEEEeecCccCCcchHHHHHHhcCccchhhceeeeccCceeeeccCCCCCcCccccCCCCCCcceEEECCCCCCcCC
Confidence 3579999999999999999999 565 5999999999998876655544 678999999999999999986 2
Q ss_pred C-CcceEEEecC
Q psy2847 72 E-GNGEICLKDL 82 (83)
Q Consensus 72 g-~~Gei~~~~~ 82 (83)
+ +.|+|+++.+
T Consensus 438 ~~~~G~l~~~~~ 449 (626)
T KOG1175|consen 438 STGNGELRLKPP 449 (626)
T ss_pred CCceeEEEEeCC
Confidence 2 7899998865
>PRK06164 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.04 E-value=1.3e-09 Score=72.10 Aligned_cols=82 Identities=21% Similarity=0.355 Sum_probs=58.3
Q ss_pred CCCceEEEEEec-CCCCHHHHHHh--cCCeEecccCccccccceeecCCCC---cccCceecCc-CCcEEEEECCC----
Q psy2847 2 GLDRCRVSLSGA-AAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD---FKLDGVGRTI-PGTQTKIVDPD---- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg-~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~---~~~~~~g~p~-~~~~~~v~d~~---- 70 (83)
+++++|.+.+++ ++...+..+++ .+..+++.||+||++..+....... .+....|.|. +++.++++|++
T Consensus 292 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~~~~~~ 371 (540)
T PRK06164 292 DFPSARLFGFASFAPALGELAALARARGVPLTGLYGSSEVQALVALQPATDPVSVRIEGGGRPASPEARVRARDPQDGAL 371 (540)
T ss_pred CCcceeeeeeccCCcchHHHHHHHhhcCCceecceeeccccceeeccCCCCCCcceeccCccccCCCeEEEEecCCCCcC
Confidence 467888887766 45555565655 5788999999999987655443321 2234567775 78999999864
Q ss_pred --CCCcceEEEecCC
Q psy2847 71 --EEGNGEICLKDLI 83 (83)
Q Consensus 71 --~g~~Gei~~~~~~ 83 (83)
.|+.|||+++|++
T Consensus 372 ~~~g~~Gel~v~g~~ 386 (540)
T PRK06164 372 LPDGESGEIEIRAPS 386 (540)
T ss_pred CCCCCeeEEEEeccc
Confidence 4678999999963
>TIGR03335 F390_ftsA coenzyme F390 synthetase
Back Show alignment and domain information
Probab=99.02 E-value=2.2e-09 Score=70.39 Aligned_cols=73 Identities=16% Similarity=0.268 Sum_probs=54.2
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCCc
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEGN 74 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~~ 74 (83)
.++|.++++|+++++++.+++ +++.+++.||+||++ .+..+.. . .....+.+.+.++|+|++ .|+.
T Consensus 204 ~~lr~ii~gGE~l~~~~r~~ie~~~g~~v~~~YG~TE~~-~~~~c~~---~-~g~h~~~d~~~vEIvDp~~~~~vp~Ge~ 278 (445)
T TIGR03335 204 SSIRRLVVGGESFADESRNYVEELWGCEVYNTYGSTEGT-MCGECQA---V-AGLHVPEDLVHLDVYDPRHQRFLPDGEC 278 (445)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHhCCcEEecCChhhhh-heEEecC---C-CCccccCCceEEEEEcCCCCCCCcCCCc
Confidence 579999999999999988777 789999999999985 3322211 1 122333456789999976 3678
Q ss_pred ceEEEec
Q psy2847 75 GEICLKD 81 (83)
Q Consensus 75 Gei~~~~ 81 (83)
|||++.+
T Consensus 279 GELvvT~ 285 (445)
T TIGR03335 279 GRIVLTT 285 (445)
T ss_pred eEEEEEe
Confidence 9999875
This enzyme, characterized in Methanobacterium thermoautotrophicum and found in several other methanogens, modifies coenzyme F420 by ligation of AMP (or GMP) from ATP (or GTP). On F420, it activates an aromatic hydroxyl group, which is unusual chemistry for an adenylyltransferase. This enzyme name has been attached to numbers of uncharacterized genes likely to instead act as phenylacetate CoA ligase, based on proximity to predicted indolepyruvate ferredoxin oxidoreductase (1.2.7.8) genes. The enzyme acts during transient exposure of the organism to oxygen.
>TIGR02155 PA_CoA_ligase phenylacetate-CoA ligase
Back Show alignment and domain information
Probab=99.02 E-value=3.3e-09 Score=68.81 Aligned_cols=77 Identities=18% Similarity=0.330 Sum_probs=53.6
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCcccccc-ceeecCCCCcccCceecCcCCcEEEEECCC------CCC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAG-AHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEG 73 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~-~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~ 73 (83)
.++|.++++|++++++..+++ ++..+++.||+||+++ ........ ...+. ..+.+...++++|++ .|+
T Consensus 195 ~~lr~i~~~ge~l~~~~~~~i~~~~g~~v~~~YG~tE~~~~~~~~~~~~-~~~g~-~~~~~~~~~eivd~~~g~~v~~Ge 272 (422)
T TIGR02155 195 TSLQVGIFGAEPWTNAMRKEIEARLGMKATDIYGLSEVIGPGVAMECVE-TQDGL-HIWEDHFYPEIIDPHTGEVLPDGE 272 (422)
T ss_pred CceEEEEEeCCcCCHHHHHHHHHHhCCceEecccchhhcCCceeecccc-cCCCc-eEecCeeEEEEECCCCCCCCCCCC
Confidence 479999999999999988888 7889999999999853 22221111 11111 122235677899853 478
Q ss_pred cceEEEecC
Q psy2847 74 NGEICLKDL 82 (83)
Q Consensus 74 ~Gei~~~~~ 82 (83)
.|||++++.
T Consensus 273 ~Gelvvt~~ 281 (422)
T TIGR02155 273 EGELVFTTL 281 (422)
T ss_pred eeEEEEecC
Confidence 899999864
Phenylacetate-CoA ligase (PA-CoA ligase) catalyzes the first step in aromatic catabolism of phenylacetic acid (PA) into phenylacetyl-CoA (PA-CoA). Often located in a conserved gene cluster with enzymes involved in phenylacetic acid activation (paaG/H/I/J), phenylacetate-CoA ligase has been found among the proteobacteria as well as in gram positive prokaryotes. In the B-subclass proteobacterium Azoarcus evansii, phenylacetate-CoA ligase has been shown to be induced under aerobic and anaerobic growth conditions. It remains unclear however, whether this induction is due to the same enzyme or to another isoenzyme restricted to specific anaerobic growth conditions.
>PRK05850 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=99.02 E-value=1e-09 Score=73.23 Aligned_cols=81 Identities=23% Similarity=0.315 Sum_probs=55.7
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c---C---CeEecccCccccccceeecCCCCc----------------------
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L---D---IAICEVFGMSECAGAHTVSAPDDF---------------------- 50 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~---~---~~~~~~yG~tE~~~~~~~~~~~~~---------------------- 50 (83)
+++++|.+++||+++++++.++| + + ..+++.||+||++..+........
T Consensus 286 ~~~~lr~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 365 (578)
T PRK05850 286 DLGGVLGIISGSERVHPATLKRFADRFAPFNLRETAIRPSYGLAEATVYVATREPGQPPESVRFDYEKLSAGHAKRCETG 365 (578)
T ss_pred chhhheeEEECcCCCCHHHHHHHHHHHHhcCcCcccccCccchhhhhhheeccCCCCCceEEEECHHHHhCCceEecCCC
Confidence 35689999999999999998887 3 2 368899999998754432211100
Q ss_pred ---ccCceecCcCCcEEEEECCC------CCCcceEEEecCC
Q psy2847 51 ---KLDGVGRTIPGTQTKIVDPD------EEGNGEICLKDLI 83 (83)
Q Consensus 51 ---~~~~~g~p~~~~~~~v~d~~------~g~~Gei~~~~~~ 83 (83)
.....|.|. +.+++++|++ .++.|||+++|+.
T Consensus 366 ~g~~~~~~g~p~-~~~~~ivd~~~~~~~~~g~~Gel~v~g~~ 406 (578)
T PRK05850 366 GGTPLVSYGSPR-SPTVRIVDPDTCIECPAGTVGEIWVHGDN 406 (578)
T ss_pred CCceEEeccCCC-CCEEEEEcCCCCcCCCCCCEEEEEEecCc
Confidence 001234443 5788998854 3678999999974
>PRK06178 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.99 E-value=3.3e-09 Score=70.65 Aligned_cols=81 Identities=23% Similarity=0.303 Sum_probs=58.4
Q ss_pred CCceEEEEEe--cCCCCHHHHHHh---cCCeEe-cccCccccccceeecCC---C----CcccCceecCcCCcEEEEECC
Q psy2847 3 LDRCRVSLSG--AAAISTELKRYF---LDIAIC-EVFGMSECAGAHTVSAP---D----DFKLDGVGRTIPGTQTKIVDP 69 (83)
Q Consensus 3 l~~lr~~~~g--g~~~~~~~~~~~---~~~~~~-~~yG~tE~~~~~~~~~~---~----~~~~~~~g~p~~~~~~~v~d~ 69 (83)
++++|.++.+ ++++++++.+++ ++..++ +.||+||++..+..... . ....+++|+|+++++++++|+
T Consensus 324 l~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~vG~p~~g~~v~v~d~ 403 (567)
T PRK06178 324 LSSLRQVRVVSFVKKLNPDYRQRWRALTGSVLAEAAWGMTETHTCDTFTAGFQDDDFDLLSQPVFVGLPVPGTEFKICDF 403 (567)
T ss_pred cchheeeeeccccccCCHHHHHHHHHHhCCcccccccccccccccceeccccccCccccccCCcccccccCCcEEEEEcC
Confidence 4567776543 488999999888 566655 47999998765433211 1 123467899999999999995
Q ss_pred C------CCCcceEEEecCC
Q psy2847 70 D------EEGNGEICLKDLI 83 (83)
Q Consensus 70 ~------~g~~Gei~~~~~~ 83 (83)
+ .|+.|||+++|++
T Consensus 404 ~~~~~~~~g~~Gel~v~g~~ 423 (567)
T PRK06178 404 ETGELLPLGAEGEIVVRTPS 423 (567)
T ss_pred CCCCcCCCCCceEEEEECCc
Confidence 4 4678999999874
>PLN02479 acetate-CoA ligase
Back Show alignment and domain information
Probab=98.93 E-value=7.1e-09 Score=69.27 Aligned_cols=81 Identities=22% Similarity=0.282 Sum_probs=57.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecC---C------C-C-cccCceecCcCCcE-EEEE
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSA---P------D-D-FKLDGVGRTIPGTQ-TKIV 67 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~---~------~-~-~~~~~~g~p~~~~~-~~v~ 67 (83)
.++++|.++++|+++++++.++| .+.++++.||+||+++.+.... . . . ......|.+.+++. ++++
T Consensus 308 ~~~~l~~~~~~G~~~~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~i~ 387 (567)
T PLN02479 308 PLPRVVHVMTAGAAPPPSVLFAMSEKGFRVTHTYGLSETYGPSTVCAWKPEWDSLPPEEQARLNARQGVRYIGLEGLDVV 387 (567)
T ss_pred cccceeEEEEcCCCCCHHHHHHHHhcCCceecccccccccccccceeccccccccCcccccccccccCCCcCCcCceeEE
Confidence 35789999999999999999988 6788999999999854332211 0 0 0 11134677777765 7888
Q ss_pred CCC-------C-CCcceEEEecC
Q psy2847 68 DPD-------E-EGNGEICLKDL 82 (83)
Q Consensus 68 d~~-------~-g~~Gei~~~~~ 82 (83)
|++ + ++.|||+++|+
T Consensus 388 d~~~~~~~~~~g~~~GEl~v~g~ 410 (567)
T PLN02479 388 DTKTMKPVPADGKTMGEIVMRGN 410 (567)
T ss_pred cCCCCcccCCCCCCceEEEEecc
Confidence 743 1 25799999986
>PRK07868 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.90 E-value=7.4e-09 Score=73.42 Aligned_cols=76 Identities=16% Similarity=0.279 Sum_probs=54.5
Q ss_pred CCceEEEEEecCCCCHHHHHHh---cC-CeEecccCccccccceeecCCCCcccCceecCcCCc-EEEEE----------
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF---LD-IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGT-QTKIV---------- 67 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~---~~-~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~-~~~v~---------- 67 (83)
++++|.++ |+.+++++.+++ ++ ..+++.||+||++...... ...+.+++|+|++++ ++++.
T Consensus 719 ~~slr~~~--g~gl~~~l~~~~~~~~~~~~l~~~YG~TE~~~~~~~~--~~~~~~svG~p~pg~~~v~i~~~d~~~g~li 794 (994)
T PRK07868 719 NHPVRLFI--GSGMPTGLWERVVEAFAPAHVVEFFATTDGQAVLANV--SGAKIGSKGRPLPGAGRVELAAYDPEHDLIL 794 (994)
T ss_pred CCceEEEe--cCCCCHHHHHHHHHHhCchheeeeeeccccccccccc--CCCCCcccCCccCCCCceeEEEecCcCCcee
Confidence 45789765 345899999888 54 7899999999986543221 224567899999997 56653
Q ss_pred -CCC-------CCCcceEEEecC
Q psy2847 68 -DPD-------EEGNGEICLKDL 82 (83)
Q Consensus 68 -d~~-------~g~~Gei~~~~~ 82 (83)
|++ .|+.|||+++++
T Consensus 795 ~d~~G~~~~~~~ge~Gel~~~~~ 817 (994)
T PRK07868 795 EDDRGFVRRAEVNEVGVLLARAR 817 (994)
T ss_pred ecCCceEEEcCCCCceEEEEecC
Confidence 222 367899999986
>PRK07798 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.87 E-value=2.2e-08 Score=65.79 Aligned_cols=77 Identities=22% Similarity=0.247 Sum_probs=55.5
Q ss_pred CCCceEEEEEecCCCCHHHHHHh---c-CCeEecccCccccccceeecCCCCcccCce--ecCcCCcEEEEECCC-----
Q psy2847 2 GLDRCRVSLSGAAAISTELKRYF---L-DIAICEVFGMSECAGAHTVSAPDDFKLDGV--GRTIPGTQTKIVDPD----- 70 (83)
Q Consensus 2 ~l~~lr~~~~gg~~~~~~~~~~~---~-~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~--g~p~~~~~~~v~d~~----- 70 (83)
+++++|.+++||+++++++.+++ + +..+++.||+||++.+......... ... +++.++..++++|++
T Consensus 294 ~~~~l~~i~~gG~~~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~ 371 (533)
T PRK07798 294 DLSSLFAIASGGALFSPSVKEALLELLPNVVLTDSIGSSETGFGGSGTVAKGA--VHTGGPRFTIGPRTVVLDEDGNPVE 371 (533)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHcCCCeEEeeecccccccccccCCCCCC--ccCCCCccCCCceEEEECCCCCCCC
Confidence 35689999999999999999888 4 7789999999998654433222111 122 377889999999876
Q ss_pred CCCc--ceEEEe
Q psy2847 71 EEGN--GEICLK 80 (83)
Q Consensus 71 ~g~~--Gei~~~ 80 (83)
.++. |+|+..
T Consensus 372 ~g~~~~g~l~~~ 383 (533)
T PRK07798 372 PGSGEIGWIARR 383 (533)
T ss_pred CCCCCeeEEEee
Confidence 2444 666543
>PLN03102 acyl-activating enzyme; Provisional
Back Show alignment and domain information
Probab=98.80 E-value=3.4e-08 Score=66.32 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=33.8
Q ss_pred CceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccce
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAH 42 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~ 42 (83)
++++.+++||+++++.+.+++ ++..+++.||+||+++.+
T Consensus 300 ~~~~~~~~gg~~~~~~~~~~~~~~g~~i~~~YG~tE~~~~~ 340 (579)
T PLN03102 300 SGPVHVLTGGSPPPAALVKKVQRLGFQVMHAYGLTEATGPV 340 (579)
T ss_pred ccceEEEECCCCCCHHHHHHHHHcCCeEEeecCccccCccc
Confidence 467889999999999998888 788999999999997543
>PRK13388 acyl-CoA synthetase; Provisional
Back Show alignment and domain information
Probab=98.77 E-value=5.8e-08 Score=64.64 Aligned_cols=74 Identities=22% Similarity=0.209 Sum_probs=50.9
Q ss_pred ceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEE-----------EECCC
Q psy2847 5 RCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK-----------IVDPD 70 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~-----------v~d~~ 70 (83)
++|. .+ |+++.++..+++ ++.++++.||+||++.++.... ....+++|+|++++++. ++|++
T Consensus 266 ~l~~-~~-G~~~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~~~~--~~~~~~vG~p~~g~~i~~~~~~~~~~~~~~d~~ 341 (540)
T PRK13388 266 PLRV-AF-GNEASPRDIAEFSRRFGCQVEDGYGSSEGAVIVVREP--GTPPGSIGRGAPGVAIYNPETLTECAVARFDAH 341 (540)
T ss_pred ceEE-EE-CCCCCHHHHHHHHHHhCCceecccccccccceeecCC--CCCCCCCCCCCCCcEEEcCCCCccccceeccCc
Confidence 4563 33 556677777777 6888999999999986654332 23457899999987653 23332
Q ss_pred ------CCCcceEEEe-cC
Q psy2847 71 ------EEGNGEICLK-DL 82 (83)
Q Consensus 71 ------~g~~Gei~~~-~~ 82 (83)
.++.|||+++ |+
T Consensus 342 g~~~~~~~~~GEl~v~~g~ 360 (540)
T PRK13388 342 GALLNADEAIGELVNTAGA 360 (540)
T ss_pred cccccCCCcceEEEEecCC
Confidence 2457999998 65
>PRK07867 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.76 E-value=4.6e-08 Score=65.02 Aligned_cols=73 Identities=26% Similarity=0.375 Sum_probs=51.2
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCC-
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEG- 73 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~- 73 (83)
+++| +++||+++++.. +++ ++.++++.||+||++..+...+ ....+++|.|.++ ++++|++ .++
T Consensus 267 ~~lr-~~~gg~~~~~~~-~~~~~~~g~~l~~~YG~TE~~~~~~~~~--~~~~~~~g~~~~~--~~i~~~~~~~~~~~g~~ 340 (529)
T PRK07867 267 NPLR-IVYGNEGAPGDI-ARFARRFGCVVVDGFGSTEGGVAITRTP--DTPPGALGPLPPG--VAIVDPDTGTECPPAED 340 (529)
T ss_pred cceE-EEecCCCChHHH-HHHHHHhCCcEEEeecccccccccccCC--CCCCCCcCCCCCC--EEEEECCCCCCCCCCcc
Confidence 4677 456888887664 445 7889999999999875543222 2345678999998 6666643 234
Q ss_pred -----------cceEEE-ecC
Q psy2847 74 -----------NGEICL-KDL 82 (83)
Q Consensus 74 -----------~Gei~~-~~~ 82 (83)
.|||++ +++
T Consensus 341 ~~~~~~~~~~~~Gel~i~~g~ 361 (529)
T PRK07867 341 ADGRLLNADEAIGELVNTAGP 361 (529)
T ss_pred ccccccccCCcceEEEEecCC
Confidence 799998 875
>PRK08162 acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.69 E-value=1.6e-07 Score=62.33 Aligned_cols=79 Identities=23% Similarity=0.291 Sum_probs=54.2
Q ss_pred CceEEEEEecCCCCHHHHHHh--cCCeEecccCccccccceeecCCCC-----------cccCceecCcCC-cEEEEECC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDD-----------FKLDGVGRTIPG-TQTKIVDP 69 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~--~~~~~~~~yG~tE~~~~~~~~~~~~-----------~~~~~~g~p~~~-~~~~v~d~ 69 (83)
.+.+.++++|+++++++.+++ ++.++++.||+||+++.+..+.... ......|.+.+. ..++++|+
T Consensus 296 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~YG~tE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~i~d~ 375 (545)
T PRK08162 296 DHPVHAMVAGAAPPAAVIAKMEEIGFDLTHVYGLTETYGPATVCAWQPEWDALPLDERAQLKARQGVRYPLQEGVTVLDP 375 (545)
T ss_pred ccceEEEECCCCCCHHHHHHHHHhCCceeecccccccCcceeecccccccccCCccchhhccCCCCcccCCcceEEEEcC
Confidence 456677899999999998888 7888999999999865444332110 112345666543 35788885
Q ss_pred CC-------C-CcceEEEecC
Q psy2847 70 DE-------E-GNGEICLKDL 82 (83)
Q Consensus 70 ~~-------g-~~Gei~~~~~ 82 (83)
+. + +.|||+++++
T Consensus 376 ~~~~~~~~~g~~~Gel~v~g~ 396 (545)
T PRK08162 376 DTMQPVPADGETIGEIMFRGN 396 (545)
T ss_pred CCCcccCCCCCceeEEEEecC
Confidence 41 2 3699999986
>COG1541 PaaK Coenzyme F390 synthetase [Coenzyme metabolism]
Back Show alignment and domain information
Probab=98.69 E-value=9.1e-08 Score=62.76 Aligned_cols=75 Identities=19% Similarity=0.311 Sum_probs=55.6
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC------CCCc
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD------EEGN 74 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~------~g~~ 74 (83)
.++|.+++|++++++++.+.+ +++..++.||+||..+..++. +... .......++..+.++|++ .|+.
T Consensus 210 ~~lk~~i~gaE~~see~R~~ie~~~g~~~~diYGltE~~g~g~~e-C~~~--~glhi~eD~~~~Ei~dP~t~e~l~dge~ 286 (438)
T COG1541 210 LSLKKGIFGAEPWSEEMRKVIENRFGCKAFDIYGLTEGFGPGAGE-CTER--NGLHIWEDHFIFEIVDPETGEQLPDGER 286 (438)
T ss_pred cceeEEEEecccCCHHHHHHHHHHhCCceeeccccccccCCcccc-cccc--cCCCcchhhceeeeecCCcCccCCCCCe
Confidence 479999999999999999998 899999999999997663221 1111 123344567778899976 3567
Q ss_pred ceEEEec
Q psy2847 75 GEICLKD 81 (83)
Q Consensus 75 Gei~~~~ 81 (83)
|||++..
T Consensus 287 GelV~T~ 293 (438)
T COG1541 287 GELVITT 293 (438)
T ss_pred eEEEEEe
Confidence 9998754
>COG1020 EntF Non-ribosomal peptide synthetase modules and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Back Show alignment and domain information
Probab=98.41 E-value=1.6e-06 Score=58.78 Aligned_cols=78 Identities=23% Similarity=0.252 Sum_probs=60.1
Q ss_pred ceEEEEEecCCCCHHHHHHh---c--CCeEecccCccccccceeecCCCCcc--cCceecCcCCcEEEEECCC-----CC
Q psy2847 5 RCRVSLSGAAAISTELKRYF---L--DIAICEVFGMSECAGAHTVSAPDDFK--LDGVGRTIPGTQTKIVDPD-----EE 72 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~--~~~~~~~yG~tE~~~~~~~~~~~~~~--~~~~g~p~~~~~~~v~d~~-----~g 72 (83)
.+|.++++|++++..+.+++ . ...+.+.||.||+............. ...+|+|+++.++.++|+. .+
T Consensus 486 ~lr~~~~gGe~l~~~~~~~~~~~~~~~~~l~~~ygpTe~~~~~~~~~~~~~~~~~~piG~p~~n~~~~ild~~~~~~p~g 565 (642)
T COG1020 486 RLRQLLSGGEALPLALVQRLLQLAALARRLLNLYGPTEATLDAPSFPISAELESRVPIGRPVANTQLYILDQGLRPLPLG 565 (642)
T ss_pred cccEEEEcCCCCCHHHHHHHHHhccccceEeeccCccHHhhheeeEEcccccCCCCCcceeeCCCeEEEECCCCCcCCCC
Confidence 48999999999999999887 2 35799999999966544433322211 4579999999999999954 36
Q ss_pred CcceEEEecC
Q psy2847 73 GNGEICLKDL 82 (83)
Q Consensus 73 ~~Gei~~~~~ 82 (83)
..||+++.|.
T Consensus 566 v~gel~i~g~ 575 (642)
T COG1020 566 VPGELYIAGL 575 (642)
T ss_pred CCeeeEECCc
Confidence 7799999874
>TIGR02372 4_coum_CoA_lig 4-coumarate--CoA ligase, photoactive yellow protein activation family
Back Show alignment and domain information
Probab=98.05 E-value=5.3e-06 Score=53.92 Aligned_cols=57 Identities=25% Similarity=0.270 Sum_probs=39.1
Q ss_pred CCceEEEEEecCCCCHHHHHHh--cC-CeEecccCccccccceeecCCCCcccCceecCcCCcEEE
Q psy2847 3 LDRCRVSLSGAAAISTELKRYF--LD-IAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTK 65 (83)
Q Consensus 3 l~~lr~~~~gg~~~~~~~~~~~--~~-~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~ 65 (83)
++++|. +++|+++++++.+++ .+ ..+++.||+||+++++..... ...++|.++.+++
T Consensus 205 l~slr~-i~gGa~l~~~l~~~~~~~g~~~v~~~YG~TEt~~i~~~~~~-----~~~~~~~p~~~~~ 264 (386)
T TIGR02372 205 LPGVVG-VSSGAPSTAATWRCLLAAGLARLLEVYGATETGGIGLREAP-----DDPFRLLPDLACF 264 (386)
T ss_pred CCccee-EecCCCCCHHHHHHHHHhcccchhheeccccccccccccCC-----CCCcccCCCcccc
Confidence 456775 688999999999888 54 368999999999875543211 2234555555443
Ectothiorhodospira halophila. This enzyme is designated 6.2.1.12 and therefore joins a number of plant enzymes linked to lignin biosynthesis and given similar names.
>PRK08279 long-chain-acyl-CoA synthetase; Validated
Back Show alignment and domain information
Probab=98.01 E-value=3.2e-05 Score=52.21 Aligned_cols=52 Identities=21% Similarity=0.163 Sum_probs=33.7
Q ss_pred CceEEEEEecCCCCHHHHHHh---cCC-eEecccCccccccceeecCCCCcccCceecCcC
Q psy2847 4 DRCRVSLSGAAAISTELKRYF---LDI-AICEVFGMSECAGAHTVSAPDDFKLDGVGRTIP 60 (83)
Q Consensus 4 ~~lr~~~~gg~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~ 60 (83)
.++|.+ .|+++++++.+++ ++. .+++.||+||++.... .. ....+++|++.+
T Consensus 314 ~~l~~~--~g~~l~~~~~~~~~~~~~~~~l~~~YG~tE~~~~~~-~~--~~~~~~~g~~~~ 369 (600)
T PRK08279 314 HRLRLM--IGNGLRPDIWDEFQQRFGIPRILEFYAASEGNVGFI-NV--FNFDGTVGRVPL 369 (600)
T ss_pred cceeEE--ecCCCCHHHHHHHHHHhCcceeeeeecccccceeec-cc--CCCCcccccccc
Confidence 456653 4777999999888 554 5999999999874322 21 123345665444
>PTZ00297 pantothenate kinase; Provisional
Back Show alignment and domain information
Probab=97.75 E-value=8.3e-05 Score=55.23 Aligned_cols=73 Identities=21% Similarity=0.232 Sum_probs=48.6
Q ss_pred CCCCceEEEEEecC--CCCHHHHHHhcCCeEecccCccccccceeecCCCCcccCceecCcCCcEEEEECCC----CCCc
Q psy2847 1 MGLDRCRVSLSGAA--AISTELKRYFLDIAICEVFGMSECAGAHTVSAPDDFKLDGVGRTIPGTQTKIVDPD----EEGN 74 (83)
Q Consensus 1 ~~l~~lr~~~~gg~--~~~~~~~~~~~~~~~~~~yG~tE~~~~~~~~~~~~~~~~~~g~p~~~~~~~v~d~~----~g~~ 74 (83)
|| .++|.+++||+ +++..+. .+..++..||+||+. +.+.....+ ..|+|+|++++++.|.+ ....
T Consensus 755 lG-Grlr~~isGga~~~l~~~l~---~~i~i~~g~glTE~~---~~~~~~~~~--~~G~PlpgvEvKI~~~~E~~~~~~~ 825 (1452)
T PTZ00297 755 LG-GCVEKIVLCVSEESTSFSLL---EHISVCYVPCLREVF---FLPSEGVFC--VDGTPAPSLQVDLEPFDEPSDGAGI 825 (1452)
T ss_pred hc-CCeEEEEECCCccccChHHh---CCceEEEecceEEee---eecCCCCcc--cCCeecCceEEEEcccccccCCCCC
Confidence 35 67999999974 4432221 456788899999953 233332222 23999999999998742 2346
Q ss_pred ceEEEecC
Q psy2847 75 GEICLKDL 82 (83)
Q Consensus 75 Gei~~~~~ 82 (83)
|||++++.
T Consensus 826 GEIlvr~~ 833 (1452)
T PTZ00297 826 GQLVLAKK 833 (1452)
T ss_pred CeEEEEEC
Confidence 99999863
>TIGR02304 aden_form_hyp probable adenylate-forming enzyme
Back Show alignment and domain information
Probab=97.66 E-value=0.00023 Score=47.12 Aligned_cols=40 Identities=8% Similarity=0.160 Sum_probs=33.3
Q ss_pred ceEEEEEecCCCCHHHHHHh---cCCeEecccCccccccceeec
Q psy2847 5 RCRVSLSGAAAISTELKRYF---LDIAICEVFGMSECAGAHTVS 45 (83)
Q Consensus 5 ~lr~~~~gg~~~~~~~~~~~---~~~~~~~~yG~tE~~~~~~~~ 45 (83)
++|.++++|++++++..+.+ |++++++.||+|| +.+++.+
T Consensus 213 ~~k~ii~~~E~l~~~~r~~Ie~~fg~~V~~~YG~tE-g~la~eC 255 (430)
T TIGR02304 213 KPKKVISVAEVLEPQDRELIRNVFKNTVHQIYQATE-GFLASTC 255 (430)
T ss_pred CceEEEEccCCCCHHHHHHHHHHhCCCeeEccCCch-hheEEec
Confidence 68999999999999887766 8999999999999 5454444
Members of this family form a distinct clade within a larger family of proteins that also includes coenzyme F390 synthetase, an enzyme known in Methanobacterium thermoautotrophicum and a few other methanogenic archaea. That enzyme adenylates coenzyme F420 to F390, a reversible process, during oxygen stress. Other informative homologies include domains of the non-ribosomal peptide synthetases involved in activation by adenylation. The family defined by this model is likely to be of an adenylate-forming enzyme related to but distinct from coenzyme F390 synthetase.
>KOG1179|consensus
Back Show alignment and domain information
Probab=92.77 E-value=0.55 Score=32.81 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=22.5
Q ss_pred cCCCCHHHHHHh---cCC-eEecccCccccccce
Q psy2847 13 AAAISTELKRYF---LDI-AICEVFGMSECAGAH 42 (83)
Q Consensus 13 g~~~~~~~~~~~---~~~-~~~~~yG~tE~~~~~ 42 (83)
|..+.+++++.+ |+. .+.+.||+||.....
T Consensus 364 GNGLR~diW~~Fv~RFg~~~IgE~YgaTEgn~~~ 397 (649)
T KOG1179|consen 364 GNGLRPDIWQQFVKRFGIIKIGEFYGATEGNSNL 397 (649)
T ss_pred cCCCCchHHHHHHHHcCCCeEEEEeccccCccee
Confidence 445677888887 765 499999999986543
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria
Back Show alignment and domain information
Probab=92.32 E-value=0.6 Score=30.70 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=20.0
Q ss_pred CCCHHHHHH-h---cCC----eEecccCccccccceeec
Q psy2847 15 AISTELKRY-F---LDI----AICEVFGMSECAGAHTVS 45 (83)
Q Consensus 15 ~~~~~~~~~-~---~~~----~~~~~yG~tE~~~~~~~~ 45 (83)
.++.+.... + +++ .+++.|||||.....+.+
T Consensus 238 ~v~r~ef~~~l~~~~Gv~~~~~i~~~ygmtEl~s~~~~~ 276 (365)
T PF04443_consen 238 AVSREEFYARLQEVFGVIPIENIYDMYGMTELNSQAYEC 276 (365)
T ss_pred ccCHHHHHHHHHHHHCCCCHHHeeeeeeccccchhheeC
Confidence 455544433 3 665 699999999987554433
LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 83
d1pg4a_ 643
e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella en
2e-10 d1lcia_ 541
e.23.1.1 (A:) Luciferase {Firefly (Photinus pyrali
3e-08 d1ry2a_ 640
e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast
1e-06 d1v25a_ 534
e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0
1e-06
>d1pg4a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Salmonella enterica [TaxId: 28901]} Length = 643
Back Hide information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Salmonella enterica [TaxId: 28901]
Score = 52.7 bits (126), Expect = 2e-10
Identities = 14/91 (15%), Positives = 26/91 (28%), Gaps = 13/91 (14%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD------IAICEVFGMSECAGAHTVSAPDDF--KLDG 54
R+ S I+ E ++ + + + +E G P K
Sbjct: 373 RSSLRILGSVGEPINPEAWEWYWKKIGKEKCPVVDTWWQTETGGFMITPLPGAIELKAGS 432
Query: 55 VGRTIPGTQTKIVDPDEE-----GNGEICLK 80
R G Q +VD + G + +
Sbjct: 433 ATRPFFGVQPALVDNEGHPQEGATEGNLVIT 463
>d1lcia_ e.23.1.1 (A:) Luciferase {Firefly (Photinus pyralis) [TaxId: 7054]} Length = 541
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Luciferase
species: Firefly (Photinus pyralis) [TaxId: 7054]
Score = 46.4 bits (109), Expect = 3e-08
Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 10/88 (11%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD----IAICEVFGMSECAGAHTVSAPDDFKLDGVGRT 58
L SG A +S E+ I + +G++E A ++ D K VG+
Sbjct: 303 LSNLHEIASGGAPLSKEVGEAVAKRFHLPGIRQGYGLTETTSAILITPEGDDKPGAVGKV 362
Query: 59 IPGTQTKIVDPDE------EGNGEICLK 80
+P + K+VD D GE+C++
Sbjct: 363 VPFFEAKVVDLDTGKTLGVNQRGELCVR 390
>d1ry2a_ e.23.1.1 (A:) Acetyl-CoA synthetase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 640
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Acetyl-CoA synthetase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.2 bits (98), Expect = 1e-06
Identities = 14/94 (14%), Positives = 27/94 (28%), Gaps = 16/94 (17%)
Query: 3 LDRCRVSLSGAAAISTELKRYFLD------IAICEVFGMSECAGAHTVSAPDDF---KLD 53
L R S I+ E+ ++ + I I + + +E K
Sbjct: 360 LKSLRCLGSVGEPIAAEVWEWYSEKIGKNEIPIVDTYWQTESGSHLVTPLAGGVTPMKPG 419
Query: 54 GVGRTIPGTQTKIVDPD-------EEGNGEICLK 80
G ++DP+ G + +K
Sbjct: 420 SASFPFFGIDAVVLDPNTGEELNTSHAEGVLAVK 453
>d1v25a_ e.23.1.1 (A:) Long chain fatty acid-CoA ligase TT0168 {Thermus thermophilus [TaxId: 274]} Length = 534
Back Show information, alignment and structure
class: Multi-domain proteins (alpha and beta)
fold: Acetyl-CoA synthetase-like
superfamily: Acetyl-CoA synthetase-like
family: Acetyl-CoA synthetase-like
domain: Long chain fatty acid-CoA ligase TT0168
species: Thermus thermophilus [TaxId: 274]
Score = 42.2 bits (98), Expect = 1e-06
Identities = 16/98 (16%), Positives = 33/98 (33%), Gaps = 20/98 (20%)
Query: 3 LDRCRVSLSGAAAISTELKRYF--LDIAICEVFGMSECAGAHTVSAPDDF---------- 50
L R + G +A L F + + + + +G++E + +
Sbjct: 285 LKTLRRLVVGGSAAPRSLIARFERMGVEVRQGYGLTETSPVVVQNFVKSHLESLSEEEKL 344
Query: 51 -KLDGVGRTIPGTQTKIVDPD-------EEGNGEICLK 80
G IP + ++ D + + GE+ LK
Sbjct: 345 TLKAKTGLPIPLVRLRVADEEGRPVPKDGKALGEVQLK 382
