Psyllid ID: psy2889

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MGLIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Secondary Structure (PSIPRED)
ccHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccEEEEEEcccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
MGLIYAIQsadtgahshgiRRTIkccftkkfiwpplikaLDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Flexible Loop (DISEMBL)
MGLIYAIQsadtgahshgIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAaansekekvsydrKRIQKELIatheenknrinltekQCKLIIEKskkkateeaNIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITievnssllnqlkiel
Low Complexity Region (SEG)
MGLIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Disordered region (IsUnstruct)
**LIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAA*****************************INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLL*******
Disordered Region (DISOPRED)
***IYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADIL************************************************************AR*EIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Disordered Region (DISEMBL)
MGLIYAIQS*********IRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAAN*********RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Disordered Region (DISPRO)
*GLIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGLIYAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q223D2	156	ATP synthase subunit b 1	yes	N/A	0.901	0.942	0.435	4e-27
Q12GQ4	156	ATP synthase subunit b OS	yes	N/A	0.871	0.910	0.429	2e-26
A2SC66	156	ATP synthase subunit b OS	yes	N/A	0.865	0.903	0.425	3e-26
Q0BJL9	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	1e-24
B1YQL0	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	1e-24
Q39KY0	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	1e-24
A4JA31	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	1e-24
B4EEY5	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	2e-24
A0K2X9	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	2e-24
B1JSV3	156	ATP synthase subunit b OS	yes	N/A	0.852	0.891	0.438	2e-24

>sp|Q223D2|ATPF1_RHOFD ATP synthase subunit b 1 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=atpF1 PE=3 SV=1

 Score =  120 bits (301), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 95/147 (64%)

Query: 17  HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATH 76
             I   I   FT KF+WPP+ KALD+R +KIAD LAAA+  K ++S   KR++ EL  + 
Sbjct: 10  QAIVFAILVWFTMKFVWPPITKALDERAQKIADGLAAADKAKSELSSANKRVEAELALSR 69

Query: 77  EENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAI 136
            E   R+   +++ + I+E++K KATEEAN I+  A+VE  +Q N ARE L  ++  LA+
Sbjct: 70  TETTARLADADRRGQSIVEEAKSKATEEANKIIAAAKVEAEQQSNKAREVLREQVAALAV 129

Query: 137 KSAEKILNNKITIEVNSSLLNQLKIEL 163
           K AE+IL  ++   V++ LL +LK+EL
Sbjct: 130 KGAEQILRKEVNASVHADLLGRLKLEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).
Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) (taxid: 338969)

>sp|Q12GQ4|ATPF_POLSJ ATP synthase subunit b OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=atpF PE=3 SV=1

 Score =  118 bits (296), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 94/142 (66%)

Query: 22  TIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN 81
            I   FT KF+WPP++KALD+R +KIAD LAAA+  K ++S   KR+++EL  +  E+  
Sbjct: 15  AILVWFTMKFVWPPIMKALDERAQKIADGLAAADKAKSELSVANKRVEEELAKSRGESAV 74

Query: 82  RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141
           R+   E++ + +IE++K KATEE + I+  A+VE  +Q   ARE L  ++  LA+K AE+
Sbjct: 75  RLAEAERRAQALIEEAKAKATEEGSKIIAAAKVEAEQQTVKARETLREQVAALAVKGAEQ 134

Query: 142 ILNNKITIEVNSSLLNQLKIEL 163
           IL  ++   V++ LL +LK EL
Sbjct: 135 ILRKEVNAGVHADLLGRLKTEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Polaromonas sp. (strain JS666 / ATCC BAA-500) (taxid: 296591)

>sp|A2SC66|ATPF_METPP ATP synthase subunit b OS=Methylibium petroleiphilum (strain PM1) GN=atpF PE=3 SV=1

 Score =  117 bits (294), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 94/141 (66%)

Query: 23  IKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82
           I   FT KF+WPP+ KALD+R  KIAD LAAA+  K +++   KR++++L +  +EN  R
Sbjct: 16  ILAWFTMKFVWPPITKALDERASKIADGLAAADRAKTELASANKRVEEQLASVRDENARR 75

Query: 83  INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142
           +   EK+   I+E +KK+ATEE + I+  A+ E  +Q+  ARE+L  ++  LA+K AE+I
Sbjct: 76  LADAEKRALAIVEDAKKRATEEGSKIVAAAKSEAEQQLVQARESLREQVAALAVKGAEQI 135

Query: 143 LNNKITIEVNSSLLNQLKIEL 163
           L  ++   V++ LL++LK EL
Sbjct: 136 LKREVNAGVHADLLSRLKTEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Methylibium petroleiphilum (strain PM1) (taxid: 420662)

>sp|Q0BJL9|ATPF_BURCM ATP synthase subunit b OS=Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) GN=atpF PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 84/139 (60%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+ +LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKAREALRGEVASLAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia ambifaria (strain ATCC BAA-244 / AMMD) (taxid: 339670)

>sp|B1YQL0|ATPF_BURA4 ATP synthase subunit b OS=Burkholderia ambifaria (strain MC40-6) GN=atpF PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 84/139 (60%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+ +LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKAREALRGEVASLAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia ambifaria (strain MC40-6) (taxid: 398577)

>sp|Q39KY0|ATPF_BURS3 ATP synthase subunit b OS=Burkholderia sp. (strain 383) GN=atpF PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+  LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKSNAQAEAARIIAQAKAEAEQQIVKAREALRGEVATLAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia sp. (strain 383) (taxid: 269483)

>sp|A4JA31|ATPF_BURVG ATP synthase subunit b OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=atpF PE=3 SV=1

 Score =  112 bits (279), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+  LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKARETLRGEVAALAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia vietnamiensis (strain G4 / LMG 22486) (taxid: 269482)

>sp|B4EEY5|ATPF_BURCJ ATP synthase subunit b OS=Burkholderia cepacia (strain J2315 / LMG 16656) GN=atpF PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+  LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKAREALRGEVAALAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia cepacia (strain J2315 / LMG 16656) (taxid: 216591)

>sp|A0K2X9|ATPF_BURCH ATP synthase subunit b OS=Burkholderia cenocepacia (strain HI2424) GN=atpF PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+  LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKAREALRGEVAALAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia cenocepacia (strain HI2424) (taxid: 331272)

>sp|B1JSV3|ATPF_BURCC ATP synthase subunit b OS=Burkholderia cenocepacia (strain MC0-3) GN=atpF PE=3 SV=1

 Score =  111 bits (277), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 83/139 (59%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPLI ALD+R KKIAD LAAA   K ++    KR+ +EL     + + RI 
Sbjct: 18  AWFTMKFVWPPLINALDERSKKIADGLAAAEKGKAELDAAHKRVDQELAQARNDGQQRIA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ + + E+ K  A  EA  I+  A+ E  +QI  ARE L  E+  LA+K AE+IL 
Sbjct: 78  DAEKRAQAVAEEIKANAQAEAARIVAQAKAEAEQQIVKAREALRGEVAALAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVDQTAHAQLLNQLKAEL 156

Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0).

Burkholderia cenocepacia (strain MC0-3) (taxid: 406425)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
399021080	156	ATP synthase, F0 subunit b [Herbaspirill	0.865	0.903	0.489	2e-30
340789575	156	ATP synthase subunit B [Collimonas fungi	0.852	0.891	0.467	8e-28
300313650	156	F0F1-type ATP synthase subunit b [Herbas	0.865	0.903	0.503	2e-26
398832328	156	ATP synthase, F0 subunit b [Herbaspirill	0.865	0.903	0.503	2e-26
221069424	156	ATP synthase F0, B subunit [Comamonas te	0.852	0.891	0.438	2e-25
89898931	156	F0F1 ATP synthase subunit B [Rhodoferax	0.901	0.942	0.435	2e-25
296137187	156	ATP synthase F0 subunit B [Thiomonas int	0.852	0.891	0.431	3e-25
91786234	156	F0F1 ATP synthase subunit B [Polaromonas	0.871	0.910	0.429	8e-25
410695060	156	putative Sodium-transporting two-sector	0.852	0.891	0.424	1e-24
124265386	156	F0F1 ATP synthase subunit B [Methylibium	0.865	0.903	0.425	1e-24

>gi|399021080|ref|ZP_10723199.1| ATP synthase, F0 subunit b [Herbaspirillum sp. CF444] gi|398093064|gb|EJL83454.1| ATP synthase, F0 subunit b [Herbaspirillum sp. CF444]

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/141 (48%), Positives = 94/141 (66%)

Query: 23  IKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82
           I   FT KF+WPPLIKALD+R KKIAD LAAA+  K  ++   KR+Q EL    +E + R
Sbjct: 16  ILAGFTMKFVWPPLIKALDERAKKIADGLAAADRGKADLAAAEKRVQAELATARDEGQKR 75

Query: 83  INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142
           I   EK+ +LIIE++KK A+EEA  I+ NA+ +  +Q+  ARE L  E+  LA+K AE+I
Sbjct: 76  IGDAEKRAQLIIEEAKKTASEEAARIIANAKADAEQQVTKAREGLRGEVATLAVKGAEQI 135

Query: 143 LNNKITIEVNSSLLNQLKIEL 163
           L  ++    ++ LLNQLK EL
Sbjct: 136 LKREVNAAAHAELLNQLKTEL 156

Source: Herbaspirillum sp. CF444

Species: Herbaspirillum sp. CF444

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|340789575|ref|YP_004755040.1| ATP synthase subunit B [Collimonas fungivorans Ter331] gi|340554842|gb|AEK64217.1| ATP synthase B chain [Collimonas fungivorans Ter331]

 Score =  128 bits (322), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 65/139 (46%), Positives = 90/139 (64%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPPL KALD+R KKIAD LAAA+  K  ++   KR   EL    +E + RI 
Sbjct: 18  ALFTMKFVWPPLTKALDERAKKIADGLAAADRGKADLAAAEKRATAELATARDEGQKRIG 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             EK+ +LI++++KK A+EEA  I+ NA+ E  +Q+  ARE L  E+  LA+K AE+IL 
Sbjct: 78  EAEKRGQLIVDEAKKTASEEAARIIANAKAEAEQQMTKAREALRGEVATLAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++    ++ LLNQLK EL
Sbjct: 138 REVNSAAHADLLNQLKTEL 156

Source: Collimonas fungivorans Ter331

Species: Collimonas fungivorans

Genus: Collimonas

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|300313650|ref|YP_003777742.1| F0F1-type ATP synthase subunit b [Herbaspirillum seropedicae SmR1] gi|300076435|gb|ADJ65834.1| F0F1-type ATP synthase, subunit b protein [Herbaspirillum seropedicae SmR1]

 Score =  124 bits (310), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 95/141 (67%)

Query: 23  IKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82
           I   FT KF+WPPLIKALD+R KKIAD LAAA+  K  ++   KRIQ EL +  +E + R
Sbjct: 16  ILAGFTMKFVWPPLIKALDERAKKIADGLAAADRGKADLAAAEKRIQGELASARDEGQKR 75

Query: 83  INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142
           I   EK+ +LIIE++KK A EEA  I+ NAR +  +Q+N ARE L  ++  LA+K AE+I
Sbjct: 76  IGEAEKRAQLIIEEAKKTAAEEAARIVANARADAQQQVNQAREELRGQVATLAVKGAEQI 135

Query: 143 LNNKITIEVNSSLLNQLKIEL 163
           L  ++    ++ LLNQLK EL
Sbjct: 136 LKREVNAAAHADLLNQLKTEL 156

Source: Herbaspirillum seropedicae SmR1

Species: Herbaspirillum seropedicae

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|398832328|ref|ZP_10590489.1| ATP synthase, F0 subunit b [Herbaspirillum sp. YR522] gi|398223425|gb|EJN09769.1| ATP synthase, F0 subunit b [Herbaspirillum sp. YR522]

 Score =  123 bits (309), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 71/141 (50%), Positives = 95/141 (67%)

Query: 23  IKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82
           I   FT KF+WPPLIKALD+R KKIAD LAAA+  K  ++   KR+Q EL +  +E + R
Sbjct: 16  ILAGFTMKFVWPPLIKALDERAKKIADGLAAADRGKADLAAAEKRVQTELASARDEGQKR 75

Query: 83  INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142
           I   EK+ +LIIE++KK A EEA  I+ NAR +  +Q+N ARE L  E+  LA+K AE+I
Sbjct: 76  IGDAEKRAQLIIEEAKKTAAEEAARIVANARADAEQQVNKAREELRGEVATLAVKGAEQI 135

Query: 143 LNNKITIEVNSSLLNQLKIEL 163
           L  ++    ++ LLNQLK EL
Sbjct: 136 LKREVNASAHADLLNQLKTEL 156

Source: Herbaspirillum sp. YR522

Species: Herbaspirillum sp. YR522

Genus: Herbaspirillum

Family: Oxalobacteraceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|221069424|ref|ZP_03545529.1| ATP synthase F0, B subunit [Comamonas testosteroni KF-1] gi|220714447|gb|EED69815.1| ATP synthase F0, B subunit [Comamonas testosteroni KF-1]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 92/139 (66%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FT KF+WPP+ KALD+R +KIAD LAAA+  K +++   KR+++EL  T  E  +R+ 
Sbjct: 18  ALFTMKFVWPPIAKALDERAQKIADGLAAADKAKTELTAVNKRVEQELAQTRNETASRLA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             E++ + IIE++K +ATEE N I+  AR E  +Q   ARE L  ++  LA+K AE+IL 
Sbjct: 78  DAERRAQAIIEEAKARATEEGNKIVAAARAEADQQAIAAREALREQVAALAVKGAEQILK 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            ++   +++ LLN+LK EL
Sbjct: 138 KEVNAGIHADLLNRLKTEL 156

Source: Comamonas testosteroni KF-1

Species: Comamonas testosteroni

Genus: Comamonas

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|89898931|ref|YP_521402.1| F0F1 ATP synthase subunit B [Rhodoferax ferrireducens T118] gi|122480311|sp|Q223D2.1|ATPF1_RHOFD RecName: Full=ATP synthase subunit b 1; AltName: Full=ATP synthase F(0) sector subunit b 1; AltName: Full=ATPase subunit I 1; AltName: Full=F-type ATPase subunit b 1; Short=F-ATPase subunit b 1 gi|89343668|gb|ABD67871.1| ATP synthase F0, B subunit [Rhodoferax ferrireducens T118]

 Score =  120 bits (301), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 64/147 (43%), Positives = 95/147 (64%)

Query: 17  HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATH 76
             I   I   FT KF+WPP+ KALD+R +KIAD LAAA+  K ++S   KR++ EL  + 
Sbjct: 10  QAIVFAILVWFTMKFVWPPITKALDERAQKIADGLAAADKAKSELSSANKRVEAELALSR 69

Query: 77  EENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAI 136
            E   R+   +++ + I+E++K KATEEAN I+  A+VE  +Q N ARE L  ++  LA+
Sbjct: 70  TETTARLADADRRGQSIVEEAKSKATEEANKIIAAAKVEAEQQSNKAREVLREQVAALAV 129

Query: 137 KSAEKILNNKITIEVNSSLLNQLKIEL 163
           K AE+IL  ++   V++ LL +LK+EL
Sbjct: 130 KGAEQILRKEVNASVHADLLGRLKLEL 156

Source: Rhodoferax ferrireducens T118

Species: Albidiferax ferrireducens

Genus: Albidiferax

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|296137187|ref|YP_003644429.1| ATP synthase F0 subunit B [Thiomonas intermedia K12] gi|295797309|gb|ADG32099.1| ATP synthase F0, B subunit [Thiomonas intermedia K12]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 95/139 (68%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FTKKF+WPP+ KALD+R  KIAD LAAA+  K +++   +++++EL  +H+E+  R+ 
Sbjct: 18  AWFTKKFVWPPITKALDERATKIADGLAAADRAKSELASANRKVEEELARSHQESAGRLA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             E++ + +IE+++KKA E A  IL  A+ E  +Q   ARE L +++  LA+K AE IL+
Sbjct: 78  DAERRAQAVIEEARKKAEEVAANILAQAKSEADQQAVKAREQLRDQVAALAVKGAEAILH 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            +I  +V++ LLN+LK EL
Sbjct: 138 REINPQVHADLLNRLKAEL 156

Source: Thiomonas intermedia K12

Species: Thiomonas intermedia

Genus: Thiomonas

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|91786234|ref|YP_547186.1| F0F1 ATP synthase subunit B [Polaromonas sp. JS666] gi|123060396|sp|Q12GQ4.1|ATPF_POLSJ RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: Full=F-type ATPase subunit b; Short=F-ATPase subunit b gi|91695459|gb|ABE42288.1| ATP synthase F0, B subunit [Polaromonas sp. JS666]

 Score =  118 bits (296), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 61/142 (42%), Positives = 94/142 (66%)

Query: 22  TIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN 81
            I   FT KF+WPP++KALD+R +KIAD LAAA+  K ++S   KR+++EL  +  E+  
Sbjct: 15  AILVWFTMKFVWPPIMKALDERAQKIADGLAAADKAKSELSVANKRVEEELAKSRGESAV 74

Query: 82  RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK 141
           R+   E++ + +IE++K KATEE + I+  A+VE  +Q   ARE L  ++  LA+K AE+
Sbjct: 75  RLAEAERRAQALIEEAKAKATEEGSKIIAAAKVEAEQQTVKARETLREQVAALAVKGAEQ 134

Query: 142 ILNNKITIEVNSSLLNQLKIEL 163
           IL  ++   V++ LL +LK EL
Sbjct: 135 ILRKEVNAGVHADLLGRLKTEL 156

Source: Polaromonas sp. JS666

Species: Polaromonas sp. JS666

Genus: Polaromonas

Family: Comamonadaceae

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|410695060|ref|YP_003625682.1| putative Sodium-transporting two-sector ATPase AtpF [Thiomonas sp. 3As] gi|294341485|emb|CAZ89902.1| putative Sodium-transporting two-sector ATPase AtpF [Thiomonas sp. 3As]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 95/139 (68%)

Query: 25  CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN 84
             FTKKF+WPP+ KALD+R  KIAD LAAA+  K +++   +++++EL  +H+E+  R+ 
Sbjct: 18  AWFTKKFVWPPITKALDERATKIADGLAAADRAKSELASANRKVEEELARSHQESAGRLA 77

Query: 85  LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
             E++ + +IE+++KKA E A  I+  A+ E  +Q   ARE L +++  LA+K AE IL+
Sbjct: 78  DAERRAQAVIEEARKKAEEVAANIVAQAKSEADQQAVKAREQLRDQVAALAVKGAEAILH 137

Query: 145 NKITIEVNSSLLNQLKIEL 163
            +I  +V++ LLN+LK EL
Sbjct: 138 REINPQVHADLLNRLKAEL 156

Source: Thiomonas sp. 3As

Species: Thiomonas sp. 3As

Genus: Thiomonas

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

>gi|124265386|ref|YP_001019390.1| F0F1 ATP synthase subunit B [Methylibium petroleiphilum PM1] gi|226741509|sp|A2SC66.1|ATPF_METPP RecName: Full=ATP synthase subunit b; AltName: Full=ATP synthase F(0) sector subunit b; AltName: Full=ATPase subunit I; AltName: Full=F-type ATPase subunit b; Short=F-ATPase subunit b gi|124258161|gb|ABM93155.1| ATP synthase F0, B subunit [Methylibium petroleiphilum PM1]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 60/141 (42%), Positives = 94/141 (66%)

Query: 23  IKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR 82
           I   FT KF+WPP+ KALD+R  KIAD LAAA+  K +++   KR++++L +  +EN  R
Sbjct: 16  ILAWFTMKFVWPPITKALDERASKIADGLAAADRAKTELASANKRVEEQLASVRDENARR 75

Query: 83  INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI 142
           +   EK+   I+E +KK+ATEE + I+  A+ E  +Q+  ARE+L  ++  LA+K AE+I
Sbjct: 76  LADAEKRALAIVEDAKKRATEEGSKIVAAAKSEAEQQLVQARESLREQVAALAVKGAEQI 135

Query: 143 LNNKITIEVNSSLLNQLKIEL 163
           L  ++   V++ LL++LK EL
Sbjct: 136 LKREVNAGVHADLLSRLKTEL 156

Source: Methylibium petroleiphilum PM1

Species: Methylibium petroleiphilum

Genus: Methylibium

Order: Burkholderiales

Class: Betaproteobacteria

Phylum: Proteobacteria

Superkingdom: Bacteria

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
UNIPROTKB|Q9KNH1	156	atpF "ATP synthase subunit b"	0.840	0.878	0.335	2.9e-16
TIGR_CMR|VC_2768	156	VC_2768 "ATP synthase F0, B su	0.840	0.878	0.335	2.9e-16
TIGR_CMR|CBU_1941	156	CBU_1941 "ATP synthase F0, B s	0.834	0.871	0.330	6e-16
TIGR_CMR|CPS_0058	156	CPS_0058 "ATP synthase F0, B s	0.840	0.878	0.321	1.4e-14
UNIPROTKB|P0ABA0	156	atpF [Escherichia coli K-12 (t	0.840	0.878	0.306	3.8e-14
TIGR_CMR|SO_4751	156	SO_4751 "ATP synthase F0, B su	0.840	0.878	0.313	4.9e-14
TIGR_CMR|CHY_2549	159	CHY_2549 "ATP synthase F0, B s	0.828	0.849	0.281	3.2e-10
TIGR_CMR|DET_0560	169	DET_0560 "ATP synthase F0, B s	0.791	0.763	0.217	3.2e-06
TIGR_CMR|BA_5551	168	BA_5551 "ATP synthase F0, B su	0.766	0.744	0.244	0.00048
UNIPROTKB|P07951	284	TPM2 "Tropomyosin beta chain"	0.742	0.426	0.292	0.00089

UNIPROTKB|Q9KNH1 atpF "ATP synthase subunit b" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 46/137 (33%), Positives = 73/137 (53%)

Query:    27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             F  K++WPP+IKA++DR+KKIAD L AA   K+ +   +     +L          I   
Sbjct:    20 FCMKYVWPPIIKAIEDRQKKIADGLQAAERAKKDLDLAQANASDQLKEAKRTATELIEQA 79

Query:    87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
              K+   II++++++A  E   IL  A  EI  + N AR+ L  ++  LAI  AEKIL   
Sbjct:    80 NKRKAQIIDEAREEAQAERQKILTQAEAEIEAERNRARDELRKQVATLAIAGAEKILERS 139

Query:   147 ITIEVNSSLLNQLKIEL 163
             I  + +  +L+ +  +L
Sbjct:   140 IDKDTHKDILDNITAKL 156

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|VC_2768 VC_2768 "ATP synthase F0, B subunit" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 46/137 (33%), Positives = 73/137 (53%)

Query:    27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             F  K++WPP+IKA++DR+KKIAD L AA   K+ +   +     +L          I   
Sbjct:    20 FCMKYVWPPIIKAIEDRQKKIADGLQAAERAKKDLDLAQANASDQLKEAKRTATELIEQA 79

Query:    87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
              K+   II++++++A  E   IL  A  EI  + N AR+ L  ++  LAI  AEKIL   
Sbjct:    80 NKRKAQIIDEAREEAQAERQKILTQAEAEIEAERNRARDELRKQVATLAIAGAEKILERS 139

Query:   147 ITIEVNSSLLNQLKIEL 163
             I  + +  +L+ +  +L
Sbjct:   140 IDKDTHKDILDNITAKL 156

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CBU_1941 CBU_1941 "ATP synthase F0, B subunit" [Coxiella burnetii RSA 493 (taxid:227377)]

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 45/136 (33%), Positives = 78/136 (57%)

Query:    28 TKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE 87
             T KFIWPPL KAL+ R+K IAD LAAA   ++++     + +++L     +  + I    
Sbjct:    21 TMKFIWPPLTKALEARRKNIADGLAAAEEGRKELELAEIKSKEQLTEAKTQAAHIIEQAN 80

Query:    88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI 147
             ++   I+E++K KA EE   ++  A+ EI ++ N A+  L  +I  +A+  A+KIL  ++
Sbjct:    81 QRANHIVEEAKNKAREEGAHLIQLAKNEIEQEYNAAKTELLKQISTIAVAGAQKILQREV 140

Query:   148 TIEVNSSLLNQLKIEL 163
                 N  L+++L  E+
Sbjct:   141 DKASNDRLVDELVSEI 156

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CPS_0058 CPS_0058 "ATP synthase F0, B subunit" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 44/137 (32%), Positives = 75/137 (54%)

Query:    27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             F  K++WPP+I A++DR+  IAD LAA++   + +   +++   +L     +  + ++  
Sbjct:    20 FCMKYVWPPIIGAIEDRQATIADGLAASDRAAKDLELAQEKATAQLKEAKVQAASIVDAA 79

Query:    87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
             +K    I++++  KA  E   IL +   EI  + N A+E L  E+  LAI  AEKIL   
Sbjct:    80 KKHEAKIVDEAAGKAQVEKERILASGHAEIETERNRAKEELRKEVAVLAIAGAEKILERS 139

Query:   147 ITIEVNSSLLNQLKIEL 163
             I    +S +L++L  EL
Sbjct:   140 IDAAAHSDILDKLVAEL 156

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

UNIPROTKB|P0ABA0 atpF [Escherichia coli K-12 (taxid:83333)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 42/137 (30%), Positives = 74/137 (54%)

Query:    27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             F  K++WPPL+ A++ R+K+IAD LA+A    + +   +     +L     E +  I   
Sbjct:    20 FCMKYVWPPLMAAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQA 79

Query:    87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
              K+   I++++K +A +E   I+  A+ EI  +   ARE L  ++  LA+  AEKI+   
Sbjct:    80 NKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELRKQVAILAVAGAEKIIERS 139

Query:   147 ITIEVNSSLLNQLKIEL 163
             +    NS ++++L  EL
Sbjct:   140 VDEAANSDIVDKLVAEL 156

GO:0031225 "anchored to membrane" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IMP

GO:0045263 "proton-transporting ATP synthase complex, coupling factor F(o)" evidence=IEA;IMP

GO:0015992 "proton transport" evidence=IEA

GO:0015986 "ATP synthesis coupled proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006754 "ATP biosynthetic process" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=IMP

TIGR_CMR|SO_4751 SO_4751 "ATP synthase F0, B subunit" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 43/137 (31%), Positives = 72/137 (52%)

Query:    27 FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             F  KF+WPPL+ A++ R+K+IAD LA A+   + +   + +   +L          I   
Sbjct:    20 FCMKFVWPPLMNAIEARQKRIADGLADADRAVKDLELAQAKATDQLKEAKVTANEIIEQA 79

Query:    87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
              K+   I+E++K +A  E   I+   + EI  + N  +E+L  ++  LAI  AEKIL   
Sbjct:    80 NKRKAQIVEEAKTEADAERAKIIAQGKAEIEAERNRVKEDLRKQVATLAIMGAEKILERS 139

Query:   147 ITIEVNSSLLNQLKIEL 163
             I    +S ++N+L  E+
Sbjct:   140 IDPAAHSDIVNKLVAEI 156

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|CHY_2549 CHY_2549 "ATP synthase F0, B subunit" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 38/135 (28%), Positives = 67/135 (49%)

Query:    29 KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
             K  ++ P++K ++DRKK I + L  A   +E+    +      +    EE +  I   +K
Sbjct:    23 KILLYKPVLKTIEDRKKSIEESLEKAAKAQEEAERIKAEYDGMIAKAREEAREIIAKAQK 82

Query:    89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT 148
               +   E+    A  EA  +L +A+  I ++   A   L  EI NLA+ +A KILN  +T
Sbjct:    83 TAQAEKEEIIATAQREAQSLLADAKATIAQEKEKALRELRQEIGNLAVLAAGKILNRAVT 142

Query:   149 IEVNSSLLNQLKIEL 163
             +E +  L+++   E+
Sbjct:   143 LEDHQKLVDEFLNEV 157

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|DET_0560 DET_0560 "ATP synthase F0, B subunit" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 113 (44.8 bits), Expect = 3.2e-06, P = 3.2e-06
 Identities = 28/129 (21%), Positives = 64/129 (49%)

Query:    31 FIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQC 90
             F + P++  LD+R  +I + +   +  KE+     +  +K++    ++ +  I    K  
Sbjct:    31 FAYKPILAKLDERSARIKESMERTDQVKEQAQRAEEEFKKKIGEASQQGQLVIERAVKTG 90

Query:    91 KLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIE 150
               I +K+ ++A  EA  +L  AR EI ++ +   + L  E   L I +A K+++  +  +
Sbjct:    91 DEIRQKAIEEARAEAEAMLSRARTEIRQERDEVVDQLRKEFAELTILAAGKVIDQSLDKK 150

Query:   151 VNSSLLNQL 159
              + +L++ +
Sbjct:   151 AHQALIDSV 159

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

TIGR_CMR|BA_5551 BA_5551 "ATP synthase F0, B subunit" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 100 (40.3 bits), Expect = 0.00048, P = 0.00048
 Identities = 32/131 (24%), Positives = 67/131 (51%)

Query:    29 KKFIWPPLIKALDDRKKKIADILAAA---NSEKEKVSYDRKRIQKELIATHEENKNRINL 85
             +KF W PL+  + +R++ +A+ + AA   N+E +K+  +++ + K+   +  E +  I  
Sbjct:    30 RKFAWGPLMGIMKEREEHVANEIDAAERNNAEAKKLVEEQREMLKQ---SRVEAQELIER 86

Query:    86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN 145
              +KQ     +     A EEA  I  +A  EI ++   A   L  ++ +L+++ A K++  
Sbjct:    87 AKKQAVDQKDVIVAAAKEEAESIKASAVQEIQREKEQAIAALQEQVASLSVQIASKVIEK 146

Query:   146 KITIEVNSSLL 156
             ++  E    L+
Sbjct:   147 ELKEEDQVKLI 157

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0045264 "plasma membrane proton-transporting ATP synthase complex, coupling factor F(o)" evidence=ISS

GO:0046933 "proton-transporting ATP synthase activity, rotational mechanism" evidence=ISS

UNIPROTKB|P07951 TPM2 "Tropomyosin beta chain" [Homo sapiens (taxid:9606)]

 Score = 103 (41.3 bits), Expect = 0.00089, P = 0.00089
 Identities = 38/130 (29%), Positives = 76/130 (58%)

Query:    39 ALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEE-NKNRINLTEKQCKLIIEKS 97
             A+D  ++  AD   A +  K+ +  +++ +QK+L  T +E  K   ++ E Q KL  E++
Sbjct:    18 AIDRAEQAEADKKQAEDRCKQ-LEEEQQALQKKLKGTEDEVEKYSESVKEAQEKL--EQA 74

Query:    98 KKKATE-EANIILYNARVEIIKQ-INIARENLHNEIVNL--AIKSAEKILNNKITIEVNS 153
             +KKAT+ EA++   N R++++++ ++ A+E L   +  L  A K+A++       IE N 
Sbjct:    75 EKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADESERGMKVIE-NR 133

Query:   154 SLLNQLKIEL 163
             ++ ++ K+EL
Sbjct:   134 AMKDEEKMEL 143

GO:0043462 "regulation of ATPase activity" evidence=IDA

GO:0003779 "actin binding" evidence=IDA

GO:0005862 "muscle thin filament tropomyosin" evidence=TAS

GO:0008307 "structural constituent of muscle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006936 "muscle contraction" evidence=TAS

GO:0030049 "muscle filament sliding" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4GAH3	ATPF_HERAR	No assigned EC number	0.4468	0.8650	0.9038	yes	N/A
A1V8T5	ATPF_BURMS	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
Q0K5M3	ATPF_CUPNH	No assigned EC number	0.4113	0.8650	0.9038	yes	N/A
B2JJK3	ATPF_BURP8	No assigned EC number	0.4255	0.8650	0.9038	yes	N/A
B1XSD0	ATPF_POLNS	No assigned EC number	0.3805	0.8220	0.8589	yes	N/A
Q223D2	ATPF1_RHOFD	No assigned EC number	0.4353	0.9018	0.9423	yes	N/A
A1VIU8	ATPF_POLNA	No assigned EC number	0.4255	0.8650	0.9038	yes	N/A
Q1Q895	ATPF_PSYCK	No assigned EC number	0.3445	0.9079	0.9487	yes	N/A
B2I0Z8	ATPF_ACIBC	No assigned EC number	0.3432	0.8220	0.8589	yes	N/A
A1WF54	ATPF_VEREI	No assigned EC number	0.4184	0.8650	0.9038	yes	N/A
Q46VX6	ATPF_CUPPJ	No assigned EC number	0.4255	0.8650	0.9038	yes	N/A
B2T7K4	ATPF_BURPP	No assigned EC number	0.4113	0.8650	0.9038	yes	N/A
Q1BRA6	ATPF_BURCA	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A4SUT0	ATPF_POLSQ	No assigned EC number	0.3805	0.8220	0.8589	yes	N/A
Q6FFK4	ATPF_ACIAD	No assigned EC number	0.3243	0.9079	0.9487	yes	N/A
A6T474	ATPF_JANMA	No assigned EC number	0.4609	0.8650	0.9038	yes	N/A
A3P0Z4	ATPF_BURP0	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
A4JA31	ATPF_BURVG	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A1WZT5	ATPF_HALHL	No assigned EC number	0.3267	0.9263	0.9679	yes	N/A
B7I1W0	ATPF_ACIB5	No assigned EC number	0.3432	0.8220	0.8589	yes	N/A
Q12GQ4	ATPF_POLSJ	No assigned EC number	0.4295	0.8711	0.9102	yes	N/A
B2UGV3	ATPF_RALPJ	No assigned EC number	0.4184	0.8650	0.9038	yes	N/A
B4EEY5	ATPF_BURCJ	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A1TJ37	ATPF_ACIAC	No assigned EC number	0.4326	0.8650	0.9038	yes	N/A
A3MQJ5	ATPF_BURM7	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
Q62FR9	ATPF_BURMA	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
A9AJG0	ATPF_BURM1	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A0K2X9	ATPF_BURCH	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
Q2STE5	ATPF_BURTA	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
B3R7L9	ATPF_CUPTR	No assigned EC number	0.4113	0.8650	0.9038	yes	N/A
A2SC66	ATPF_METPP	No assigned EC number	0.4255	0.8650	0.9038	yes	N/A
A9BPU3	ATPF_DELAS	No assigned EC number	0.4397	0.8650	0.9038	yes	N/A
A2S6K2	ATPF_BURM9	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
B1JSV3	ATPF_BURCC	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A3NF44	ATPF_BURP6	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
Q8XU72	ATPF_RALSO	No assigned EC number	0.4042	0.8650	0.9038	yes	N/A
Q3SF62	ATPF_THIDA	No assigned EC number	0.3669	0.8527	0.8910	yes	N/A
Q0BJL9	ATPF_BURCM	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
Q63PH6	ATPF_BURPS	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A
Q39KY0	ATPF_BURS3	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
B1YQL0	ATPF_BURA4	No assigned EC number	0.4388	0.8527	0.8910	yes	N/A
A1W2T3	ATPF_ACISJ	No assigned EC number	0.4255	0.8650	0.9038	yes	N/A
Q13SP8	ATPF_BURXL	No assigned EC number	0.4042	0.8650	0.9038	yes	N/A
A9HY36	ATPF_BORPD	No assigned EC number	0.3768	0.8466	0.8846	yes	N/A
Q1LHK6	ATPF_RALME	No assigned EC number	0.4113	0.8650	0.9038	yes	N/A
B7H298	ATPF_ACIB3	No assigned EC number	0.3432	0.8220	0.8589	yes	N/A
B0VBP7	ATPF_ACIBY	No assigned EC number	0.3432	0.8220	0.8589	yes	N/A
Q4FQ33	ATPF_PSYA2	No assigned EC number	0.3445	0.9079	0.9487	yes	N/A
Q3JXV4	ATPF_BURP1	No assigned EC number	0.4316	0.8527	0.8910	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	163
PRK05759	156	PRK05759, PRK05759, F0F1 ATP synthase subunit B; V	6e-26
TIGR01144	147	TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b	4e-19
COG0711	161	COG0711, AtpF, F0F1-type ATP synthase, subunit b [	9e-15
pfam00430	132	pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)	2e-09
PRK06231	205	PRK06231, PRK06231, F0F1 ATP synthase subunit B; V	6e-09
PRK14471	164	PRK14471, PRK14471, F0F1 ATP synthase subunit B; P	6e-08
PRK14472	175	PRK14472, PRK14472, F0F1 ATP synthase subunit B; P	4e-07
PRK13461	159	PRK13461, PRK13461, F0F1 ATP synthase subunit B; P	6e-06
PRK13453	173	PRK13453, PRK13453, F0F1 ATP synthase subunit B; P	5e-05
TIGR03321	246	TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F	7e-05
PRK09173	159	PRK09173, PRK09173, F0F1 ATP synthase subunit B; V	8e-05
CHL00118	156	CHL00118, atpG, ATP synthase CF0 B' subunit; Valid	1e-04
PRK13460	173	PRK13460, PRK13460, F0F1 ATP synthase subunit B; P	0.004

>gnl|CDD|180240 PRK05759, PRK05759, F0F1 ATP synthase subunit B; Validated

 Score = 96.0 bits (240), Expect = 6e-26
 Identities = 51/137 (37%), Positives = 81/137 (59%)

Query: 27  FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
           F  KF+WPP++KAL++R+KKIAD LAAA   K+++   + + + +L     E    I   
Sbjct: 20  FIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQA 79

Query: 87  EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
           +K+   IIE++K +A  EA  I   A+ EI ++   ARE L  ++ +LA+  AEKIL  +
Sbjct: 80  KKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRE 139

Query: 147 ITIEVNSSLLNQLKIEL 163
           +     S L+++L  EL
Sbjct: 140 LDAAAQSDLIDKLIAEL 156

Length = 156

>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b

 Score = 78.2 bits (193), Expect = 4e-19
 Identities = 49/137 (35%), Positives = 78/137 (56%)

Query: 27  FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
           F  K++WPPL KA++ R+KKIAD LA+A   K++ +  +K+ Q  L    +E +  I   
Sbjct: 11  FCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENA 70

Query: 87  EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
            K+   I+E++K +A EE   I   AR EI  +   ARE L  ++ +L++  AEKI+   
Sbjct: 71  NKRGSEILEEAKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERN 130

Query: 147 ITIEVNSSLLNQLKIEL 163
           I  +    L+++L  EL
Sbjct: 131 IDKQAQKDLIDKLVAEL 147

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase [Energy metabolism, ATP-proton motive force interconversion]. Length = 147

>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production and conversion]

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 48/137 (35%), Positives = 69/137 (50%)

Query: 27  FTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT 86
             KKF+W P++KALD+R+ KIAD LA A   KE+        ++EL    E+    I   
Sbjct: 22  LLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQA 81

Query: 87  EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK 146
           +K+ + I E+ K +A EE   I   A  EI  +   A E L  E+  LA+  AEK+L  K
Sbjct: 82  KKEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKK 141

Query: 147 ITIEVNSSLLNQLKIEL 163
           +       L++    EL
Sbjct: 142 VDEAAQKDLIDAFIAEL 158

Length = 161

>gnl|CDD|109486 pfam00430, ATP-synt_B, ATP synthase B/B' CF(0)

 Score = 52.6 bits (127), Expect = 2e-09
 Identities = 33/116 (28%), Positives = 61/116 (52%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
             F + PL K LD+RK+KIA+ +  A    ++ +      +++L     E    IN  +K
Sbjct: 17  IYFGYKPLGKILDERKEKIANNIKEAEERLKQAAALLAEAEQQLAQARAEASEIINNAKK 76

Query: 89  QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
           + + + E+   +A ++A  +L +AR EI ++   A   L  ++  LA++ AEK+L 
Sbjct: 77  EAQKLKEEILAEAQKDAERLLESARAEIEQEKEQALAELRQQVAALAVQIAEKLLG 132

Part of the CF(0) (base unit) of the ATP synthase. The base unit is thought to translocate protons through membrane (inner membrane in mitochondria, thylakoid membrane in plants, cytoplasmic membrane in bacteria). The B subunits are thought to interact with the stalk of the CF(1) subunits. This domain should not be confused with the ab CF(1) proteins (in the head of the ATP synthase) which are found in pfam00006. Length = 132

>gnl|CDD|180481 PRK06231, PRK06231, F0F1 ATP synthase subunit B; Validated

 Score = 52.2 bits (125), Expect = 6e-09
 Identities = 34/132 (25%), Positives = 66/132 (50%)

Query: 32  IWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK 91
            W P  + L+ RK+ I   +  AN  K++     +  ++       + K  I+    +  
Sbjct: 69  FWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEAL 128

Query: 92  LIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEV 151
            +  + +K+A  +AN+I++ AR EI K+    +E L  E V LA+ +AE+++  K+  E 
Sbjct: 129 QLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDRED 188

Query: 152 NSSLLNQLKIEL 163
           +  L+++   EL
Sbjct: 189 DDKLVDEFIREL 200

Length = 205

>gnl|CDD|184695 PRK14471, PRK14471, F0F1 ATP synthase subunit B; Provisional

 Score = 49.0 bits (117), Expect = 6e-08
 Identities = 32/118 (27%), Positives = 62/118 (52%), Gaps = 6/118 (5%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANS---EKEKVSYDRKRIQKELIATHEENKNRINL 85
            KF W P++ A+ +R+  I + LA+A     E + +  D +R+ KE  A   E    +  
Sbjct: 26  AKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARA---ERDAILKE 82

Query: 86  TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL 143
             +  + +I  +K++A  E + ++  A+  I  + N A   + N++ NL+++ AEK+L
Sbjct: 83  AREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVL 140

Length = 164

>gnl|CDD|172947 PRK14472, PRK14472, F0F1 ATP synthase subunit B; Provisional

 Score = 47.1 bits (112), Expect = 4e-07
 Identities = 38/139 (27%), Positives = 76/139 (54%), Gaps = 8/139 (5%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
           KK  W P++ AL++R+K I   +  A+S K++     ++  +EL+A  +   ++I    +
Sbjct: 36  KKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRK-NRELLAKADAEADKI---IR 91

Query: 89  QCKLIIEKSK----KKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN 144
           + K   EK +    +KA  EA  ++ +A+ EI ++   A + L NE+ +LA+K AEKI+ 
Sbjct: 92  EGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIR 151

Query: 145 NKITIEVNSSLLNQLKIEL 163
             +  +    +++ +  +L
Sbjct: 152 TSLDADKQKKVVDSMIQDL 170

Length = 175

>gnl|CDD|184064 PRK13461, PRK13461, F0F1 ATP synthase subunit B; Provisional

 Score = 43.5 bits (103), Expect = 6e-06
 Identities = 29/119 (24%), Positives = 63/119 (52%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
           K F +  +   +D R+ +I + +  A+ +++K    + + ++EL    EE K  +   + 
Sbjct: 23  KHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKS 82

Query: 89  QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI 147
           + + + E+  K+A EEA++I+  A++E  ++   A   + N+ V+LA+  + K L   I
Sbjct: 83  KAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESI 141

Length = 159

>gnl|CDD|184060 PRK13453, PRK13453, F0F1 ATP synthase subunit B; Provisional

 Score = 41.0 bits (96), Expect = 5e-05
 Identities = 31/120 (25%), Positives = 58/120 (48%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
           KKF W PL   +D R++ I   +  A   K       +  +++L  T EE +  +   + 
Sbjct: 36  KKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKV 95

Query: 89  QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT 148
           Q +   E+   +A   AN ++  A+ EI  Q   A  +++N++  L++  A K+L  +I+
Sbjct: 96  QARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEIS 155

Length = 173

>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 13/108 (12%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
           K+F++ P++ A+D R+KKIA  LA A         D K+ + E      E KN     ++
Sbjct: 23  KRFLYRPILDAMDAREKKIAGELADA---------DTKKREAEQERREYEEKN--EELDQ 71

Query: 89  QCKLIIEKSKKKATEEANIILYNARVEIIKQINIAR-ENLHNEIVNLA 135
           Q ++++ K+K++A  E   +L  AR E   +I     E L  E   L+
Sbjct: 72  QREVLLTKAKEEAQAERQRLLDEAREE-ADEIREKWQEALRREQAALS 118

A small number of taxonomically diverse prokaryotic species, including Methanosarcina barkeri, have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase. Length = 246

>gnl|CDD|169691 PRK09173, PRK09173, F0F1 ATP synthase subunit B; Validated

 Score = 40.5 bits (95), Expect = 8e-05
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 18/132 (13%)

Query: 36  LIKALDDRKKKIADILAAANSEKEKVS-----YDRKRIQKELIATHEENKNRINLTEKQC 90
           + ++LD R  +I + LA A   +E+       Y RKR + E     +E  + +   E++ 
Sbjct: 27  IARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAE-----KEAADIVAAAEREA 81

Query: 91  KLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEI----VNLAIKSAEKILNNK 146
           + +  ++K+K   E  +   N   E  ++I  A  +  N +    V+LAI +AEK+L  K
Sbjct: 82  EALTAEAKRKT--EEYVARRNKLAE--QKIAQAETDAINAVRSSAVDLAIAAAEKLLAEK 137

Query: 147 ITIEVNSSLLNQ 158
           +  +  S L   
Sbjct: 138 VDAKAASELFKD 149

Length = 159

>gnl|CDD|214369 CHL00118, atpG, ATP synthase CF0 B' subunit; Validated

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 31/111 (27%), Positives = 58/111 (52%)

Query: 35  PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII 94
           PL+K LD+RK+ I   L  A+    K +   K+ ++EL    +E +  I  ++K+ K I+
Sbjct: 46  PLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIV 105

Query: 95  EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN 145
           E   K+A +  + +L  A  ++  Q   A ++L  ++  L+ +  EK+L  
Sbjct: 106 ENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKLLIK 156

Length = 156

>gnl|CDD|139585 PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional

 Score = 35.8 bits (82), Expect = 0.004
 Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 8/126 (6%)

Query: 29  KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK 88
           KKF W  ++KALD+R   + + +  A+  + +     K  +  L +  +E  N I    K
Sbjct: 34  KKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDE-ANAIVAEAK 92

Query: 89  QCKLIIEKSKKKATEEANIILYNARVEIIKQINIAR----ENLHNEIVNLAIKSAEKILN 144
              L   K K K  EE N  +   + + +K+I +A+      L N+IV + I  A K+L 
Sbjct: 93  SDAL---KLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLE 149

Query: 145 NKITIE 150
            ++  E
Sbjct: 150 KQLKKE 155

Length = 173

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	100.0
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	100.0
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	100.0
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	100.0
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	100.0
PRK05759	156	F0F1 ATP synthase subunit B; Validated	100.0
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	100.0
PRK06231	205	F0F1 ATP synthase subunit B; Validated	100.0
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	100.0
PRK07352	174	F0F1 ATP synthase subunit B; Validated	100.0
CHL00019	184	atpF ATP synthase CF0 B subunit	100.0
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	100.0
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	100.0
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	100.0
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	100.0
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	100.0
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	100.0
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	100.0
PRK09173	159	F0F1 ATP synthase subunit B; Validated	100.0
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	100.0
PRK06568	154	F0F1 ATP synthase subunit B; Validated	100.0
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	100.0
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	100.0
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	99.97
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	99.97
PRK08475	167	F0F1 ATP synthase subunit B; Validated	99.96
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	99.95
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	99.22
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	99.19
PRK08404	103	V-type ATP synthase subunit H; Validated	99.19
PRK09174	204	F0F1 ATP synthase subunit B'; Validated	99.11
PRK08476	141	F0F1 ATP synthase subunit B'; Validated	99.1
PRK07352	174	F0F1 ATP synthase subunit B; Validated	99.03
PRK13454	181	F0F1 ATP synthase subunit B'; Provisional	98.94
PRK09173	159	F0F1 ATP synthase subunit B; Validated	98.89
PRK14472	175	F0F1 ATP synthase subunit B; Provisional	98.79
PRK14475	167	F0F1 ATP synthase subunit B; Provisional	98.78
PRK05759	156	F0F1 ATP synthase subunit B; Validated	98.78
CHL00019	184	atpF ATP synthase CF0 B subunit	98.77
PRK06568	154	F0F1 ATP synthase subunit B; Validated	98.74
PRK13453	173	F0F1 ATP synthase subunit B; Provisional	98.73
PRK13461	159	F0F1 ATP synthase subunit B; Provisional	98.73
PRK13460	173	F0F1 ATP synthase subunit B; Provisional	98.72
PRK06231	205	F0F1 ATP synthase subunit B; Validated	98.7
CHL00118	156	atpG ATP synthase CF0 B' subunit; Validated	98.69
PRK14473	164	F0F1 ATP synthase subunit B; Provisional	98.68
PRK14471	164	F0F1 ATP synthase subunit B; Provisional	98.66
PRK13455	184	F0F1 ATP synthase subunit B; Provisional	98.59
TIGR01144	147	ATP_synt_b ATP synthase, F0 subunit b. This model	98.54
PRK14474	250	F0F1 ATP synthase subunit B; Provisional	98.53
PRK08475	167	F0F1 ATP synthase subunit B; Validated	98.44
PRK07353	140	F0F1 ATP synthase subunit B'; Validated	98.42
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	98.42
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	98.39
PRK06328	223	type III secretion system protein; Validated	98.38
COG0711	161	AtpF F0F1-type ATP synthase, subunit b [Energy pro	98.36
PF00430	132	ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR	98.35
PF05405	163	Mt_ATP-synt_B: Mitochondrial ATP synthase B chain	98.34
PRK01558	198	V-type ATP synthase subunit E; Provisional	98.29
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	98.24
PRK01005	207	V-type ATP synthase subunit E; Provisional	98.21
PRK06937	204	type III secretion system protein; Reviewed	98.08
PRK03963	198	V-type ATP synthase subunit E; Provisional	98.05
PRK01005	207	V-type ATP synthase subunit E; Provisional	98.03
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	98.02
PRK02292	188	V-type ATP synthase subunit E; Provisional	98.02
PRK09098	233	type III secretion system protein HrpB; Validated	97.97
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	97.92
PRK01194	185	V-type ATP synthase subunit E; Provisional	97.86
COG2811	108	NtpF Archaeal/vacuolar-type H+-ATPase subunit H [E	97.85
PRK03963	198	V-type ATP synthase subunit E; Provisional	97.8
MTH00169	67	ATP8 ATP synthase F0 subunit 8; Provisional	97.72
MTH00025	70	ATP8 ATP synthase F0 subunit 8; Validated	97.66
PRK06669	281	fliH flagellar assembly protein H; Validated	97.65
PRK08404	103	V-type ATP synthase subunit H; Validated	97.57
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	97.54
PF02326	86	YMF19: Plant ATP synthase F0; InterPro: IPR003319	97.44
PRK01558	198	V-type ATP synthase subunit E; Provisional	97.37
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	97.29
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	97.23
PRK01194	185	V-type ATP synthase subunit E; Provisional	96.99
TIGR02926	85	AhaH ATP synthase archaeal, H subunit. he A1/A0 AT	96.96
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	96.86
PRK02292	188	V-type ATP synthase subunit E; Provisional	96.83
PRK06569	155	F0F1 ATP synthase subunit B'; Validated	96.8
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	96.62
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	96.58
PRK00409	782	recombination and DNA strand exchange inhibitor pr	96.54
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	96.51
PF03179	105	V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterP	96.49
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	96.3
PRK12704	520	phosphodiesterase; Provisional	96.2
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	96.18
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	96.1
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	96.09
KOG3976|consensus	247		95.65
KOG1772|consensus	108		95.12
PRK00106	535	hypothetical protein; Provisional	95.04
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	94.56
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	94.34
PRK13386	236	fliH flagellar assembly protein H; Provisional	94.27
TIGR01069	771	mutS2 MutS2 family protein. Function of MutS2 is u	94.06
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	93.75
PRK15322	210	invasion protein OrgB; Provisional	93.55
PRK00409	782	recombination and DNA strand exchange inhibitor pr	93.37
PF06936	190	Selenoprotein_S: Selenoprotein S (SelS); InterPro:	93.17
PF01741	128	MscL: Large-conductance mechanosensitive channel,	92.93
PF12072	201	DUF3552: Domain of unknown function (DUF3552); Int	92.91
PF05933	48	Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L	92.09
PRK12705	508	hypothetical protein; Provisional	91.88
KOG1772|consensus	108		91.79
PRK09098	233	type III secretion system protein HrpB; Validated	91.49
PF06936	190	Selenoprotein_S: Selenoprotein S (SelS); InterPro:	91.31
TIGR01147	113	V_ATP_synt_G vacuolar ATP synthase, subunit G. Thi	89.45
COG1970	130	MscL Large-conductance mechanosensitive channel [C	89.42
PRK06397	111	V-type ATP synthase subunit H; Validated	88.75
PRK09731	178	putative general secretion pathway protein YghD; P	88.75
COG1862	97	YajC Preprotein translocase subunit YajC [Intracel	88.71
PF06103	90	DUF948: Bacterial protein of unknown function (DUF	87.27
PRK11637	428	AmiB activator; Provisional	86.67
PRK13955	130	mscL large-conductance mechanosensitive channel; P	84.48
PRK06669	281	fliH flagellar assembly protein H; Validated	83.22
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	82.92
KOG2302|consensus	1956		82.77
PRK13953	125	mscL large-conductance mechanosensitive channel; P	82.2
PRK12704	520	phosphodiesterase; Provisional	82.16
COG4741	175	Predicted secreted endonuclease distantly related	82.07
PRK06032	199	fliH flagellar assembly protein H; Validated	81.42
KOG1962|consensus	216		81.0
TIGR03319	514	YmdA_YtgF conserved hypothetical protein YmdA/YtgF	80.65

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.2e-38  Score=238.25  Aligned_cols=159  Identities=18%  Similarity=0.200  Sum_probs=156.2

Q ss_pred             cccccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI   83 (163)
Q Consensus         5 ~~~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii   83 (163)
                      +|+++||| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|+
T Consensus         9 ~~~l~~~~~~~~~~~i~Flil~~iL~~~~~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii   88 (173)
T PRK13460          9 LSLLDVNPGLVVWTLVTFLVVVLVLKKFAWDVILKALDERASGVQNDINKASELRLEAEALLKDYEARLNSAKDEANAIV   88 (173)
T ss_pred             CCccCCcHhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            79999997 66999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      ++|+.+++.+.++++++|+.++++++++++.+|+.+++++..+|+.+++++|+.+|+|+|++.+|+++|.++||+||+++
T Consensus        89 ~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a~~el~~ei~~lA~~~a~kil~~~l~~~~~~~lid~~i~~~  168 (173)
T PRK13460         89 AEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKALSQLQNQIVEMTITIASKVLEKQLKKEDYKAFIETELAKL  168 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999874

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.8e-37  Score=230.46  Aligned_cols=157  Identities=17%  Similarity=0.278  Sum_probs=152.8

Q ss_pred             cccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         7 ~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      ++++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++..|+++
T Consensus         3 ~~~~~~~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~   82 (164)
T PRK14473          3 KLGINLGLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQ   82 (164)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5577765 599999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      |+.+++..+++++++|+.++++++++++.+|+.+++++..+|+++++++|+.+|+|+|++++|+++|.++|++||+++
T Consensus        83 A~~~a~~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~~i~~la~~~a~kil~~~l~~~~~~~li~~~i~~~  160 (164)
T PRK14473         83 AQERARAQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKSQIADLVTLTASRVLGAELQARGHDALIAESLAAL  160 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999874

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=3.6e-37  Score=229.80  Aligned_cols=159  Identities=20%  Similarity=0.312  Sum_probs=152.9

Q ss_pred             cccccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI   83 (163)
Q Consensus         5 ~~~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii   83 (163)
                      |+++.|+| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++....+|+..|.+|+.++.+|+
T Consensus         1 ~~~l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii   80 (164)
T PRK14471          1 MDLLTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL   80 (164)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45667766 56999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-HHHHHHHHHHHHhh
Q psy2889          84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT-IEVNSSLLNQLKIE  162 (163)
Q Consensus        84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~-~~~~~~li~~~i~~  162 (163)
                      .+|+.+++.++++++++|+.++++++++|+.+|+.++.++..+|+++++++|+.+|+|+|+++++ +++|+++||.||++
T Consensus        81 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~la~~~a~kil~~~l~~~~~~~~lid~~i~~  160 (164)
T PRK14471         81 KEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANLSVEIAEKVLRKELSNKEKQHKLVEKMLGD  160 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHhHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999996 57899999999987


Q ss_pred             C
Q psy2889         163 L  163 (163)
Q Consensus       163 l  163 (163)
                      +
T Consensus       161 ~  161 (164)
T PRK14471        161 V  161 (164)
T ss_pred             c
Confidence            5

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=7.4e-37  Score=227.08  Aligned_cols=155  Identities=21%  Similarity=0.290  Sum_probs=151.8

Q ss_pred             cCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE   87 (163)
Q Consensus         9 ~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~   87 (163)
                      ++|| +++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+|+++|+
T Consensus         2 ~~~~~~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~   81 (159)
T PRK13461          2 EINIPTIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYK   81 (159)
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4675 679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      .+++..+++++++|+.++++++++++.+|+.++.++..+|+.+++++|+.+|+|+|++++|+++|.++||.||+++
T Consensus        82 ~~a~~~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~ei~~lA~~~a~kil~~~~~~~~~~~li~~~i~~~  157 (159)
T PRK13461         82 SKAENVYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQAVDLAVLLSSKALEESIDESEHRRLIKDFISKV  157 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhHc
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=1.3e-36  Score=229.08  Aligned_cols=158  Identities=23%  Similarity=0.348  Sum_probs=154.0

Q ss_pred             ccccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus         6 ~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      .+++|||+ +||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|++
T Consensus        12 ~~~~~~~~~~~~~~i~Flil~~lL~~~l~kpi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~a~~ea~~ii~   91 (175)
T PRK14472         12 GLLSPNPGLIFWTAVTFVIVLLILKKIAWGPILSALEEREKGIQSSIDRAHSAKDEAEAILRKNRELLAKADAEADKIIR   91 (175)
T ss_pred             CccCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788875 59999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +|+.+++.+.++++++|+.+++++++.|+.+|+.+++++..++++++.++|+.+|+++|++.+|+++|.++|+.||++|
T Consensus        92 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~li~~~i~~l  170 (175)
T PRK14472         92 EGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRNEVADLAVKGAEKIIRTSLDADKQKKVVDSMIQDL  170 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999875

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=100.00  E-value=1.1e-35  Score=219.83  Aligned_cols=155  Identities=34%  Similarity=0.494  Sum_probs=153.2

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK   88 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~   88 (163)
                      +||+++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|+++|+.
T Consensus         2 ~~~~~~~~~~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~a~~~~~~a~~~~~e~~~~l~~a~~ea~~i~~~a~~   81 (156)
T PRK05759          2 NLNGTLIGQLIAFLILVWFIMKFVWPPIMKALEERQKKIADGLAAAERAKKELELAQAKYEAQLAEARAEAAEIIEQAKK   81 (156)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        89 ~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +++..+++++.+|+.+++++++.++..|+.+++.+..+++.++.++|+.+|+|+|++.+|++.|.++|+.||++|
T Consensus        82 ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~~~i~~~  156 (156)
T PRK05759         82 RAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLIDKLIAEL  156 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999875

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=1.7e-35  Score=222.52  Aligned_cols=157  Identities=21%  Similarity=0.253  Sum_probs=152.3

Q ss_pred             cccCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         7 ~l~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      ..++|| ++||++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+++|+.+|.+++.++.+|+++
T Consensus        13 ~~~~~~~t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~   92 (173)
T PRK13453         13 AGGVEWGTVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILED   92 (173)
T ss_pred             hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346665 5799999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      |+.+++.++++++++|+.++++++.+|+.+|+.++.++..+|++++.++|+.+++|+|++.+|+++|.++|+.||+++
T Consensus        93 a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~lA~~~a~kll~~~l~~~~~~~lI~~~i~~~  170 (173)
T PRK13453         93 AKVQARQQQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSELSVLIASKVLRKEISEQDQKALVDKYLKEA  170 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999874

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=100.00  E-value=1.4e-35  Score=228.26  Aligned_cols=160  Identities=24%  Similarity=0.285  Sum_probs=154.6

Q ss_pred             ccccccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           4 IYAIQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR   82 (163)
Q Consensus         4 ~~~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i   82 (163)
                      +.+.+.|||+ ++|++|||+||+|+|++|+|||+.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|
T Consensus        40 ~~~~~~~~~~~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~I  119 (205)
T PRK06231         40 IINELFPNFWVFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEI  119 (205)
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456778765 599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhh
Q psy2889          83 INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIE  162 (163)
Q Consensus        83 i~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~  162 (163)
                      +++|+.+++.++++++++|+.++++++++|+.+|+.+++++..++++++.++|+.+|+++|++.+|+++|+++|++||++
T Consensus       120 i~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~ei~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~~  199 (205)
T PRK06231        120 IDQANYEALQLKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKESVELAMLAAEELIKKKVDREDDDKLVDEFIRE  199 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999987


Q ss_pred             C
Q psy2889         163 L  163 (163)
Q Consensus       163 l  163 (163)
                      |
T Consensus       200 l  200 (205)
T PRK06231        200 L  200 (205)
T ss_pred             c
Confidence            5

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.1e-35  Score=220.99  Aligned_cols=158  Identities=16%  Similarity=0.124  Sum_probs=152.9

Q ss_pred             ccccCchHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTGAHSHGIRRTIKCCFT--KKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRI   83 (163)
Q Consensus         6 ~~l~~~~~~~~~~i~Flil~~~l--~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii   83 (163)
                      .+++|+.++||++|||+|++++|  .+|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++.+|+
T Consensus         3 ~~~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii   82 (167)
T PRK14475          3 SFFNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAML   82 (167)
T ss_pred             CCCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678888999999999999977  6889999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      .+|+.+++.+.+++++.|+.+++++++.|+.+|+.++.++..+++++++++|+.+|+|+|++++|+++|.++||+||+++
T Consensus        83 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~lAv~~A~kil~~~l~~~~~~~lid~~i~~~  162 (167)
T PRK14475         83 AAAKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVDLAAQAAETVLAARLAGAKSDPLVDAAIGQM  162 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999764

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=100.00  E-value=5.4e-35  Score=220.04  Aligned_cols=157  Identities=18%  Similarity=0.167  Sum_probs=152.9

Q ss_pred             cccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         7 ~l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      .++|||+. +|++|||+||+|+|++|+|+||.++|++|++.|.++++.|+..+.+++..+.+|+.+|.+++.++.+|+.+
T Consensus        14 ~~~~~~~~~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~   93 (174)
T PRK07352         14 GFGLNLNLLETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRAD   93 (174)
T ss_pred             CCCCchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778775 89999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      |+.+++.++++++++|+.++++++.+++..|+.++.++..+|+.++.++|+++|+++|++++|+++|.++|+.||++|
T Consensus        94 a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~qi~~la~~~A~kil~~~l~~~~~~~li~~~i~~l  171 (174)
T PRK07352         94 AKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRREAAELAIAKAESQLPGRLDEDAQQRLIDRSIANL  171 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999875

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=100.00  E-value=1.2e-34  Score=219.97  Aligned_cols=158  Identities=16%  Similarity=0.080  Sum_probs=153.1

Q ss_pred             ccccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus         6 ~~l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      +++++|+++ ++++|||+||+|+|+||+|+||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+|+.++.+|++
T Consensus        18 ~~f~~n~~~~~~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~   97 (184)
T CHL00019         18 GSFGFNTDILETNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRV   97 (184)
T ss_pred             CccCCcchHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456777776 6899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +|+.+++..++.++++|+.++++++++|+..|+.+++++..+++.++.++|+.+|+|+|++.+|+++|.++|+.||++|
T Consensus        98 ~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~ei~~lav~~A~kil~~~ld~~~~~~lid~~i~~l  176 (184)
T CHL00019         98 NGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQVRQQVFQLALQRALGTLNSCLNNELHLRTINANIGLL  176 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999874

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=2.5e-34  Score=218.19  Aligned_cols=158  Identities=15%  Similarity=0.140  Sum_probs=152.7

Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTGAHSHGIRRTIKCCFTKKFIWP-PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus         6 ~~l~~~~~~~~~~i~Flil~~~l~~~l~~-pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      ++++||+|.||++|||+||+|+|+||+|| ||.++|++|++.|.+++++|++.+.+++..+.+|+.+|.+++.++.+|++
T Consensus        21 ~~~~~~~t~~~~~inflil~~iL~~f~~~~~v~~~L~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~  100 (184)
T PRK13455         21 PFFSLSNTDFVVTLAFLLFIGILVYFKVPGMIGGMLDKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVA  100 (184)
T ss_pred             CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999765 68999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +|+.+++.+.++++++++.++++++++++.+|+.+++++..+++.+++++|+.+|+++|++++|+++|.++|+.||++|
T Consensus       101 ~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~l~~~i~~lA~~~a~kil~~~l~~~~~~~lid~~i~~l  179 (184)
T PRK13455        101 AAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKAVRDRAVSVAVAAAADVIAKQMTAADANALIDEAIKEV  179 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999874

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=100.00  E-value=5.4e-34  Score=225.16  Aligned_cols=155  Identities=18%  Similarity=0.249  Sum_probs=151.3

Q ss_pred             cCch-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADT-GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE   87 (163)
Q Consensus         9 ~~~~-~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~   87 (163)
                      ++|| |++|++|||+||+|+|++|+||||.++|++|++.|.+.+++|+..+.+++..+.+|+.++.+|+.++.+|+++|+
T Consensus         2 ~id~~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~   81 (246)
T TIGR03321         2 LIDWFTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAK   81 (246)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4564 679999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      .+|+.++++++++|+.++++++++++..|+.++.++..+++.++.++|+.+|+|+|++.+|++.|+++||.||++|
T Consensus        82 ~eA~~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~~l  157 (246)
T TIGR03321        82 EEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDELRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQRL  157 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999864

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=100.00  E-value=1.2e-33  Score=223.28  Aligned_cols=154  Identities=11%  Similarity=0.167  Sum_probs=150.6

Q ss_pred             Cc-hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          10 AD-TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEK   88 (163)
Q Consensus        10 ~~-~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~   88 (163)
                      +| +|++|++|||+||+|+|++|+|+||.++|++|+++|.+++++|++.+.+|+..+.+|+.++.+++.++.+|+++|+.
T Consensus         3 id~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~   82 (250)
T PRK14474          3 IDWFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQE   82 (250)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45 56799999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          89 QCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        89 ~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +++.++++++++|+.++++++.+++..|+.+++++..+++.++.++|+.+|+|+|++.+|++.|.++|+.|+++|
T Consensus        83 eA~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~v~~la~~~A~kiL~~~~d~~~~~~lid~~i~~l  157 (250)
T PRK14474         83 AADEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQTGQQMVKIIRAALADLANATLEQQIVGIFIARL  157 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999864

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=100.00  E-value=2.3e-33  Score=208.63  Aligned_cols=155  Identities=32%  Similarity=0.387  Sum_probs=151.2

Q ss_pred             cCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE   87 (163)
Q Consensus         9 ~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~   87 (163)
                      ++++| +||++++|+||+|++++|+|||+.++|++|+++|.+++++|+..+.+++.++++|++.|.+|+.++.+|++.|+
T Consensus         3 ~~~~~~~~~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~   82 (161)
T COG0711           3 NFNDTNILWQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAK   82 (161)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556 89999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      .++..+.+++..+++.++++++..+..+|+.++.++..+|+.++.++|+.++++++++.+|...+..+++.|+.+|
T Consensus        83 ~~a~~~~~e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~~~aekll~~~~~~~~~~~lid~~~~~l  158 (161)
T COG0711          83 KEAEQIAEEIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAVAIAEKLLGKKVDEAAQKDLIDAFIAEL  158 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999875

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=100.00  E-value=1.7e-33  Score=206.46  Aligned_cols=147  Identities=34%  Similarity=0.497  Sum_probs=145.1

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          17 HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK   96 (163)
Q Consensus        17 ~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~   96 (163)
                      ++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+|+.++.+|+++|+.+++.+.++
T Consensus         1 q~i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~   80 (147)
T TIGR01144         1 QLISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEE   80 (147)
T ss_pred             ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          97 SKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        97 ~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      ++++|+.++++++++++.+|+.++.++..+++.++.++|+.+++++|++.+|+++|.++||.||++|
T Consensus        81 ~~~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~kll~~~l~~~~~~~lid~~i~~~  147 (147)
T TIGR01144        81 AKAEAREEREKIKAQARAEIEAEKEQAREELRKQVADLSVLGAEKIIERNIDKQAQKDLIDKLVAEL  147 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999999999999999999875

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=100.00  E-value=8.7e-33  Score=204.69  Aligned_cols=140  Identities=22%  Similarity=0.271  Sum_probs=137.0

Q ss_pred             ccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         6 ~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      +++++|+|++|+++||+||+|+|++|+|||+.++|++|++.|.+++++|++.+.+++..+.+|+.+|.+|+.++.+|+++
T Consensus        17 ~~~~~n~t~~~~~inFliL~~lL~k~l~~Pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~   96 (156)
T CHL00118         17 GLFDFNATLPLMALQFLLLMVLLNIILYKPLLKVLDERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQ   96 (156)
T ss_pred             CccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN  145 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~  145 (163)
                      |+.+++...++++++|+.++++++++++.+|+.+++++..+|+.++.++|..+++|++|+
T Consensus        97 A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~v~~lA~~ia~kil~~  156 (156)
T CHL00118         97 SQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSLEEQVDTLSDQIEEKLLIK  156 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            999999999999999999999999999999999999999999999999999999999974

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=100.00  E-value=1.2e-32  Score=200.44  Aligned_cols=140  Identities=18%  Similarity=0.200  Sum_probs=137.2

Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT   86 (163)
Q Consensus         7 ~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A   86 (163)
                      ++++|+|++|++|||+||+|+|++|+||||.++|++|++.|.+++++|+..+.+++..+.+|+..|.+++.++.+|++++
T Consensus         1 ~~~~~~t~~~~~i~flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a   80 (140)
T PRK07353          1 LFDFDATLPLMAVQFVLLTFILNALFYKPVGKVVEEREDYIRTNRAEAKERLAEAEKLEAQYEQQLASARKQAQAVIAEA   80 (140)
T ss_pred             CcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889          87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK  146 (163)
Q Consensus        87 ~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~  146 (163)
                      +.+++...+.++++|+.++++++++++.+|+.+++++..+++.++.++|+++++|+||+.
T Consensus        81 ~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~v~~la~~~a~kll~~~  140 (140)
T PRK07353         81 EAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQLEQQVDALSRQILEKLLAAK  140 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC
Confidence            999999999999999999999999999999999999999999999999999999999863

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=100.00  E-value=2.7e-32  Score=202.55  Aligned_cols=150  Identities=19%  Similarity=0.190  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          14 AHSHGIRRTIKCCFTKKFIW-PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKL   92 (163)
Q Consensus        14 ~~~~~i~Flil~~~l~~~l~-~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~   92 (163)
                      +||++|+|++|+|+|++|+| +||.++|++|++.|.+++++|+..+.+++..+.+|+.+|.+++.++.+|+++|+.+++.
T Consensus         4 ~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~~   83 (159)
T PRK09173          4 TFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAEA   83 (159)
T ss_pred             hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999999999999966 79999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHHhhC
Q psy2889          93 IIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLKIEL  163 (163)
Q Consensus        93 ~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i~~l  163 (163)
                      +.+++..+|+.++++++..++.+|+.++.++..+++.+++++|+.+|+|+|++++|+++|.++|++||+++
T Consensus        84 ~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~~lA~~~A~kil~~~l~~~~~~~li~~~i~~~  154 (159)
T PRK09173         84 LTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAVDLAIAAAEKLLAEKVDAKAASELFKDALAQV  154 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999764

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=100.00  E-value=3.5e-32  Score=209.01  Aligned_cols=155  Identities=13%  Similarity=0.118  Sum_probs=148.5

Q ss_pred             ccccccCc---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           4 IYAIQSAD---TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK   80 (163)
Q Consensus         4 ~~~~l~~~---~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~   80 (163)
                      .+|.++++   +++||++|+|+||||+|++|+||||.++|++|+++|.+++++|+..+.+++..+.+|+..|.+|+.++.
T Consensus        43 ~~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI~~vLe~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~  122 (204)
T PRK09174         43 VFPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRIGGIIETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAH  122 (204)
T ss_pred             CCCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            47887775   467999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ  158 (163)
Q Consensus        81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~  158 (163)
                      +|+++|+.+++...+.++.+++.++++++++++.+|+.++.+++.+++..+.++|..+++|+||..+|+++-.+.|+.
T Consensus       123 ~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~~~dk~~~~~av~~  200 (204)
T PRK09174        123 SIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVAAAVKA  200 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998887777764

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=100.00  E-value=6.8e-32  Score=198.26  Aligned_cols=137  Identities=15%  Similarity=0.136  Sum_probs=132.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          12 TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK   91 (163)
Q Consensus        12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~   91 (163)
                      -++||++|+|+||+|+|++|+||||.++|++|.+.|.+++++|++.+++++.++++|+..|.+|+.++.+|+++|+.+++
T Consensus         5 ~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~~a~   84 (154)
T PRK06568          5 DESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNEVTK   84 (154)
T ss_pred             HhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hcC
Q psy2889          92 LIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN-KIT  148 (163)
Q Consensus        92 ~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~-~i~  148 (163)
                      .+.++++.+|+.+++++++.|+.+|+.+++.|..+++++++++|+.+|+|.... .++
T Consensus        85 ~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iAsk~~~~~~~~  142 (154)
T PRK06568         85 KIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLVSEYFQSVKLS  142 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999875 444

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=100.00  E-value=1.8e-31  Score=226.04  Aligned_cols=152  Identities=14%  Similarity=0.206  Sum_probs=148.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          12 TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCK   91 (163)
Q Consensus        12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~   91 (163)
                      |||+|++|||+||+|+|+||+||||.++|++|++.|.+++++|++.+.+++...++|++.+.+++.++++|+++|+.+++
T Consensus         2 ~t~i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~   81 (445)
T PRK13428          2 STFIGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAE   81 (445)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-CHHHHHHHHHHHHhhC
Q psy2889          92 LIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI-TIEVNSSLLNQLKIEL  163 (163)
Q Consensus        92 ~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i-~~~~~~~li~~~i~~l  163 (163)
                      .++++++++|+.++++++++++.+|+.+++++..+++.++.++|+..|+|+|++++ |++.|+++|+.||++|
T Consensus        82 ~~~~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~lAv~~A~kil~~~l~d~~~~~~lId~~i~~l  154 (445)
T PRK13428         82 RIAEQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHESVRQAGELVRNHVADPAQQSATVDRFLDEL  154 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999 5788999999999875

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=100.00  E-value=1.3e-30  Score=197.30  Aligned_cols=156  Identities=15%  Similarity=0.065  Sum_probs=146.9

Q ss_pred             ccccccCc---hHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           4 IYAIQSAD---TGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK   80 (163)
Q Consensus         4 ~~~~l~~~---~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~   80 (163)
                      -||.++++   +++||++|+|+||||+|+||+||||.++|++|++.|.+++++|+..+.+++.+..+|+..|.+++.++.
T Consensus        21 gmp~ld~~t~~~q~~~~lI~F~iL~~ll~k~l~~PI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~  100 (181)
T PRK13454         21 GMPQLDFSTFPNQIFWLLVTLVAIYFVLTRVALPRIGAVLAERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQ  100 (181)
T ss_pred             CCCCCcHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677776   367999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK  160 (163)
Q Consensus        81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i  160 (163)
                      +|+++|+.+++...++++++|+.++++++..++.+|+.++.++..+|+..+.++|..++.|+ +.++|++.-.+.|++.+
T Consensus       101 ~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL-~~~~~~~~~~~~v~~~~  179 (181)
T PRK13454        101 RIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAAL-GGKADAAAVDAAVAQRM  179 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999 45778887777777654

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=99.97  E-value=1.2e-28  Score=179.63  Aligned_cols=136  Identities=15%  Similarity=0.146  Sum_probs=132.4

Q ss_pred             cccCchH-HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADTG-AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         7 ~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      ++++||+ ++|++|||+||+|+|++|+||||.++|++|++.|.++++.|+..+.+++...++|+..+.+|+.++..++++
T Consensus         2 mi~l~~~~~~~qli~Flil~~~l~kfl~kPi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~Ar~eA~~~~~~   81 (141)
T PRK08476          2 MLDVNPYLMLATFVVFLLLIVILNSWLYKPLLKFMDNRNASIKNDLEKVKTNSSDVSEIEHEIETILKNAREEANKIRQK   81 (141)
T ss_pred             cCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4678865 699999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      +..+|....++++++|+.++++..+.+..+++.++.++..+|+.++.+++..+..|+
T Consensus        82 a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv~~~~~~~~~~~  138 (141)
T PRK08476         82 AIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQMPEFKEALNAKL  138 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999999887

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.97  E-value=7e-30  Score=183.52  Aligned_cols=132  Identities=30%  Similarity=0.353  Sum_probs=112.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          13 GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKL   92 (163)
Q Consensus        13 ~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~   92 (163)
                      |+||++|||+||+|+|++|+|||+.++|++|++.|.+.+++|+..+.+++....+|+..+.+++.++.+++++|+.+++.
T Consensus         1 tl~~~~i~Flil~~~l~~~~~~pi~~~l~~R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~   80 (132)
T PF00430_consen    1 TLFWQLINFLILFFLLNKFLYKPIKKFLDERKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEK   80 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHHHHCS--S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889          93 IIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus        93 ~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      +.++++.++++++++++..++.+|+.+++.+..+++.+++++|+++++|+|+
T Consensus        81 ~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~~~~la~~~a~kll~  132 (132)
T PF00430_consen   81 EKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQEIVDLAVDIAEKLLN  132 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999985

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=99.96  E-value=8.5e-28  Score=179.76  Aligned_cols=146  Identities=13%  Similarity=0.142  Sum_probs=133.3

Q ss_pred             cccccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus         5 ~~~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      ++.+++ +++||++|||+||+|+|++|+||||.++|++|++.|.++++.|++.+.+++..+.+|++.|.+|+.++.+|++
T Consensus        17 ~~~~~~-~~~~~~~inflil~~lL~~fl~kPi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~   95 (167)
T PRK08475         17 LGATEQ-YDIIERTINFLIFVGILWYFAAKPLKNFYKSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVE   95 (167)
T ss_pred             cCCcch-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344444 7789999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHH
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSL  155 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~l  155 (163)
                      +|+.+++.++++++++|+.+++++++.++..|+.+++++..+++.++++-+.+-  +++  .++++.--.+
T Consensus        96 ~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~--~~~--~l~~~~y~~~  162 (167)
T PRK08475         96 TAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES--KKV--SLNQQEYVNI  162 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhc--CCCHHHHHHH
Confidence            999999999999999999999999999999999999999999999999988887  553  3444433333

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=99.95  E-value=1.3e-25  Score=164.63  Aligned_cols=146  Identities=18%  Similarity=0.132  Sum_probs=138.4

Q ss_pred             cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN   81 (163)
Q Consensus         5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~   81 (163)
                      ||.+++.+   ++||++|||+|||+++++|+||||.++|++|++.|.++++.|+..+.+++.+.++|++.|.+|+.++++
T Consensus         1 mPQfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI~~iLe~R~~~I~~~L~~Ae~~k~eAe~l~a~ye~~L~~Ar~eA~~   80 (155)
T PRK06569          1 MPQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKAEEIFNNRQTNIQDNITQADTLTIEVEKLNKYYNEEIDKTNTEIDR   80 (155)
T ss_pred             CCCCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666653   459999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHH
Q psy2889          82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIE  150 (163)
Q Consensus        82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~  150 (163)
                      |..+++..+.+.....+....++....+++--.++....++.+.+..+++.++++++++|+.|...|-+
T Consensus        81 I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~~k~~~~~~~~~  149 (155)
T PRK06569         81 LKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNIIEKIAGTKADMN  149 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccccHH
Confidence            999999999999999999999999999999999999999999999999999999999999999887754

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=99.22  E-value=6.5e-10  Score=74.27  Aligned_cols=82  Identities=23%  Similarity=0.316  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSA  139 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a  139 (163)
                      .......+|+..|.+|+.++..|+.+|+.+++.++++++.+|+.++.+++..|+.+++.++..++.+++.++.+|++..+
T Consensus         3 ~ik~ae~~~~~~l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~L~~~~~   82 (85)
T TIGR02926         3 EIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK   82 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34566789999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HH
Q psy2889         140 EK  141 (163)
Q Consensus       140 ~k  141 (163)
                      ++
T Consensus        83 ~~   84 (85)
T TIGR02926        83 EK   84 (85)
T ss_pred             hc
Confidence            65

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=99.19  E-value=5.8e-10  Score=88.70  Aligned_cols=115  Identities=18%  Similarity=0.221  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH----------
Q psy2889          49 DILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKS---KKKATEEANIILYNARVE----------  115 (163)
Q Consensus        49 ~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~---~~~A~~e~~~~~~~a~~~----------  115 (163)
                      ..+..+...+.++.....+++..|.+|+.++.+|+.+|+.+++.+++++   .++++.+.+++++.|+++          
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~  102 (255)
T TIGR03825        23 RQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGE  102 (255)
T ss_pred             eeeccCcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566777778888899999999999999999999999999999988   588888888888888877          


Q ss_pred             -----------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc--CHHHHHHHHHHHHhhC
Q psy2889         116 -----------------IIKQI---NIARENLHNEIVNLAIKSAEKILNNKI--TIEVNSSLLNQLKIEL  163 (163)
Q Consensus       116 -----------------i~~e~---~~a~~~l~~~i~~la~~~a~kll~~~i--~~~~~~~li~~~i~~l  163 (163)
                                       ++..+   .....+++.++.+|++.+|+|+++..+  +++....+|+.++..+
T Consensus       103 ~e~~~~~~~~i~~a~~i~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el~~~~e~i~~lv~~al~~l  172 (255)
T TIGR03825       103 SEALSIYQSTIDEANAIVEEAKDDYEEKIESAQPLIIELACALAEKVIGVSLAEDKNAFQALVRQVLSEV  172 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc
Confidence                             44443   555778899999999999999999998  5777899999998764

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=99.19  E-value=2.4e-09  Score=74.04  Aligned_cols=85  Identities=25%  Similarity=0.262  Sum_probs=78.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          58 KEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK  137 (163)
Q Consensus        58 ~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~  137 (163)
                      -........+|+..|.+|+.++..|+.+|+.++..++++++.+|+.++.++++.|+.+++.++..++.+++.++.+|+..
T Consensus         5 i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~~A~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~   84 (103)
T PRK08404          5 IKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVK   84 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677899999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             HHHHH
Q psy2889         138 SAEKI  142 (163)
Q Consensus       138 ~a~kl  142 (163)
                      .-.++
T Consensus        85 a~~k~   89 (103)
T PRK08404         85 AEENF   89 (103)
T ss_pred             HHHHH
Confidence            66654

>PRK09174 F0F1 ATP synthase subunit B'; Validated

Probab=99.11  E-value=8e-08  Score=74.10  Aligned_cols=146  Identities=9%  Similarity=0.067  Sum_probs=110.8

Q ss_pred             cCchHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTGA---HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINL   85 (163)
Q Consensus         9 ~~~~~~---~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~   85 (163)
                      .|.+.+   .|+++.++|.|++|+.++.+-+..-+   .+-+.+.-+.......+++..+.+.+..    ..+.++.+.+
T Consensus        44 ~p~~~~~~~~~~l~w~~I~FliL~~lL~k~~~~pI---~~vLe~R~~~I~~~L~~Ae~~k~eAe~~----~~~ye~~L~~  116 (204)
T PRK09174         44 FPPFDSTHYASQLLWLAITFGLFYLFMSRVILPRI---GGIIETRRDRIAQDLDQAARLKQEADAA----VAAYEQELAQ  116 (204)
T ss_pred             CCCCcchhccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Confidence            566666   56888888989999888777665544   2334444455555566666666655544    4567788899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889          86 TEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA-------RENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ  158 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a-------~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~  158 (163)
                      |+.++..++++++.+++.+.+.++..++.+++....++       +.....++..++.+++.+++.+-++.+.+..-+..
T Consensus       117 Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~A~~el~~~a~e~A~~I~~Kllg~~~dk~~~~~  196 (204)
T PRK09174        117 ARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAKAMADVGSIAEETAAAIVEQLIGGTADKASVAA  196 (204)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccCHHHHHH
Confidence            99999999999999999999999999887766555554       45566778999999999999999998888888877


Q ss_pred             HHh
Q psy2889         159 LKI  161 (163)
Q Consensus       159 ~i~  161 (163)
                      .++
T Consensus       197 av~  199 (204)
T PRK09174        197 AVK  199 (204)
T ss_pred             HHH
Confidence            765

>PRK08476 F0F1 ATP synthase subunit B'; Validated

Probab=99.10  E-value=1.1e-07  Score=69.37  Aligned_cols=121  Identities=17%  Similarity=0.127  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII   94 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~   94 (163)
                      +|+++.-+|.|++|+.++.+-+-+-+   .+.+.+.-+........++..    +......+.+.+.++.+|+.+|..++
T Consensus         7 ~~~~~~qli~Flil~~~l~kfl~kPi---~~~l~~R~~~I~~~l~~A~~~----~~ea~~~~~e~e~~l~~Ar~eA~~~~   79 (141)
T PRK08476          7 PYLMLATFVVFLLLIVILNSWLYKPL---LKFMDNRNASIKNDLEKVKTN----SSDVSEIEHEIETILKNAREEANKIR   79 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46666666777777777777766665   344555555555555555544    45567778899999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          95 EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus        95 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      ++++.+|+.++++++++|+.+++.++.++..+++.+..+++.++...+
T Consensus        80 ~~a~~~A~~ea~~~~~~A~~~~~~~~~~a~~~l~~e~~~~~~~l~~qv  127 (141)
T PRK08476         80 QKAIAKAKEEAEKKIEAKKAELESKYEAFAKQLANQKQELKEQLLSQM  127 (141)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999888777

>PRK07352 F0F1 ATP synthase subunit B; Validated

Probab=99.03  E-value=2.7e-07  Score=69.35  Aligned_cols=143  Identities=12%  Similarity=0.059  Sum_probs=104.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2889          10 ADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKNR   82 (163)
Q Consensus        10 ~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~i   82 (163)
                      +-|+++|.+|.|++|++++++++-+-+.   ..+.+--+.......+|+....++    .....+....+.+++.++..+
T Consensus        22 ~~~~iinflIl~~lL~~fl~kpI~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~  101 (174)
T PRK07352         22 LETNLINLAIVIGLLYYFGRGFLGKILEERREAILQALKEAEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAI  101 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999875553   344444444445555555555444    556667778888889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889          83 INLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL  159 (163)
Q Consensus        83 i~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~  159 (163)
                      .++...++....+.++..|+.+++.....+..++..       ++-+.+.+.|..+..+-++.......-.++++++
T Consensus       102 ~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~-------qi~~la~~~A~kil~~~l~~~~~~~li~~~i~~l  171 (174)
T PRK07352        102 RAEIEKQAIEDMARLKQTAAADLSAEQERVIAQLRR-------EAAELAIAKAESQLPGRLDEDAQQRLIDRSIANL  171 (174)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHhh
Confidence            999999999999999999998888888777766654       4455567777777777777666666666666543

>PRK13454 F0F1 ATP synthase subunit B'; Provisional

Probab=98.94  E-value=7.9e-07  Score=67.36  Aligned_cols=137  Identities=7%  Similarity=0.089  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE   95 (163)
Q Consensus        16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~   95 (163)
                      .++++|+|.|++|++++++-+..-+   ...+.+.-+.......+++....+    ......+.+..+.+|+.++..+++
T Consensus        32 ~q~~~~lI~F~iL~~ll~k~l~~PI---~~~l~~R~~~I~~~l~~Ae~~~~e----A~~~~~eye~~L~~Ar~EA~~ii~  104 (181)
T PRK13454         32 NQIFWLLVTLVAIYFVLTRVALPRI---GAVLAERQGTITNDLAAAEELKQK----AVEAEKAYNKALADARAEAQRIVA  104 (181)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4899999999999998877766544   233334444444444445444444    445566888999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889          96 KSKKKATEEANIILYNARVEIIKQINIA-------RENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK  160 (163)
Q Consensus        96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a-------~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i  160 (163)
                      ++..++++..+.++..++.++......+       +.+...++.+++.++|.+++.+-.+.- ....+...+
T Consensus       105 ~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I~~~k~~a~~~l~~~a~~lA~~i~~kL~~~~-~~~~~~~~v  175 (181)
T PRK13454        105 ETRAEIQAELDVAIAKADAEIAAKAAESEKRIAEIRAGALESVEEVAKDTAEALVAALGGKA-DAAAVDAAV  175 (181)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            9999999999999999988877766664       445566788889999999988885544 444444443

>PRK09173 F0F1 ATP synthase subunit B; Validated

Probab=98.89  E-value=3.2e-06  Score=62.56  Aligned_cols=146  Identities=12%  Similarity=0.035  Sum_probs=100.9

Q ss_pred             CchHHHHHHHHHHHHHH-HHH-HHhH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          10 ADTGAHSHGIRRTIKCC-FTK-KFIW-------PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENK   80 (163)
Q Consensus        10 ~~~~~~~~~i~Flil~~-~l~-~~l~-------~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~   80 (163)
                      +.++.++.++.|+++++ +.+ +.+-       ..|.+-+++=...-...-..-.....+......+....+..++.++.
T Consensus         3 ~~~w~~i~f~i~l~~l~~~~~~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~~~e~~L~~A~~ea~~ii~~A~~~a~   82 (159)
T PRK09173          3 ATFWAFVGLVLFLALVVYLKVPGMIARSLDARADRIKNELAEARRLREEAQQLLAEYQRKRKEAEKEAADIVAAAEREAE   82 (159)
T ss_pred             chHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555555555555543 323 4443       23444444444444444444445555666677788889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQLK  160 (163)
Q Consensus        81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~i  160 (163)
                      .++++++.++....+.+...|+.+++.....+..++..+..       +-+...|..+.++-+........-.++++++-
T Consensus        83 ~~~~~a~~~a~~~~~~~~~~a~~~I~~ek~~a~~el~~~~~-------~lA~~~A~kil~~~l~~~~~~~li~~~i~~~~  155 (159)
T PRK09173         83 ALTAEAKRKTEEYVARRNKLAEQKIAQAETDAINAVRSSAV-------DLAIAAAEKLLAEKVDAKAASELFKDALAQVK  155 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHh
Confidence            99999999999999999999999999988888777665544       44577777777777777777777777777654


Q ss_pred             hh
Q psy2889         161 IE  162 (163)
Q Consensus       161 ~~  162 (163)
                      ..
T Consensus       156 ~~  157 (159)
T PRK09173        156 TR  157 (159)
T ss_pred             hh
Confidence            43

>PRK14472 F0F1 ATP synthase subunit B; Provisional

Probab=98.79  E-value=7.6e-06  Score=61.54  Aligned_cols=59  Identities=12%  Similarity=-0.050  Sum_probs=30.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK  118 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~  118 (163)
                      +......+....+.+++.++..+.++...+|....+.+++.|+.+++.....+..++..
T Consensus        78 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I~~e~~~a~~~l~~  136 (175)
T PRK14472         78 LLAKADAEADKIIREGKEYAEKLRAEITEKAHTEAKKMIASAKEEIEQEKRRALDVLRN  136 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444455555555555555555555555555555555555555555544444433

>PRK14475 F0F1 ATP synthase subunit B; Provisional

Probab=98.78  E-value=1.1e-05  Score=60.34  Aligned_cols=148  Identities=10%  Similarity=0.011  Sum_probs=100.5

Q ss_pred             cccccCc-hHHHHHHHHHHHH--HHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSAD-TGAHSHGIRRTIK--CCFTKKFIWPP-------LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA   74 (163)
Q Consensus         5 ~~~l~~~-~~~~~~~i~Flil--~~~l~~~l~~p-------i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~   74 (163)
                      .|+.+|. |++++.+|.|+||  +.++++.+..-       |.+-+++=+..-...-..-............+....+.+
T Consensus         5 ~~~~~~~~w~~i~f~il~~iL~~~k~l~~pi~~~le~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~   84 (167)
T PRK14475          5 FNLSNPEFWVGAGLLIFFGILIALKVLPKALAGALDAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAA   84 (167)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455564 5557777777766  46777766543       344444333333333333334444555667777888999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHH
Q psy2889          75 THEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSS  154 (163)
Q Consensus        75 a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~  154 (163)
                      ++.++..+.+++..++....+.+++.|+.+++.....+..++..+...       -+...|..+..+-++...+...-++
T Consensus        85 A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I~~e~~~a~~el~~e~~~-------lAv~~A~kil~~~l~~~~~~~lid~  157 (167)
T PRK14475         85 AKADARRMEAEAKEKLEEQIKRRAEMAERKIAQAEAQAAADVKAAAVD-------LAAQAAETVLAARLAGAKSDPLVDA  157 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHhHcCHHHHHHHHHH
Confidence            999999999999999999999999999999988888887777665544       4566666666666666666666666


Q ss_pred             HHHHH
Q psy2889         155 LLNQL  159 (163)
Q Consensus       155 li~~~  159 (163)
                      +|+..
T Consensus       158 ~i~~~  162 (167)
T PRK14475        158 AIGQM  162 (167)
T ss_pred             HHHHH
Confidence            66554

>PRK05759 F0F1 ATP synthase subunit B; Validated

Probab=98.78  E-value=7.8e-06  Score=60.16  Aligned_cols=141  Identities=13%  Similarity=0.086  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          14 AHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLI   93 (163)
Q Consensus        14 ~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~   93 (163)
                      |-|+++-.+|.|++|..++++.+.+-+.   +.+.+.-+.......+++....+.+..+.    +.+..+.+|+.++..+
T Consensus         3 ~~~~~~~~~i~Flil~~il~~~~~~pi~---~~l~~R~~~I~~~l~~a~~~~~~a~~~~~----e~~~~l~~a~~ea~~i   75 (156)
T PRK05759          3 LNGTLIGQLIAFLILVWFIMKFVWPPIM---KALEERQKKIADGLAAAERAKKELELAQA----KYEAQLAEARAEAAEI   75 (156)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHH
Confidence            4466777777777777777777666552   33444444444444555555554444443    5556667777777778


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhcCHHHHHHHHHHHHh
Q psy2889          94 IEKSKKKATEEANIILYNARVEIIKQINIARENLHNE-------IVNLAIKSAEKILNNKITIEVNSSLLNQLKI  161 (163)
Q Consensus        94 ~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~-------i~~la~~~a~kll~~~i~~~~~~~li~~~i~  161 (163)
                      ++++..+|....+.++..++.+++...+.+...+..+       +...+.+.|..+.++-++.......-..+++
T Consensus        76 ~~~a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~l~~~~~~lA~~~a~k~l~~~~d~~~~~~~i~  150 (156)
T PRK05759         76 IEQAKKRAAQIIEEAKAEAEAEAARIKAQAQAEIEQERKRAREELRKQVADLAVAGAEKILGRELDAAAQSDLID  150 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHcCHHHHHHHHH
Confidence            8888888888888887777777777777776666554       4444445555555555555444444444443

>CHL00019 atpF ATP synthase CF0 B subunit

Probab=98.77  E-value=1e-05  Score=61.31  Aligned_cols=141  Identities=13%  Similarity=0.068  Sum_probs=96.4

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
Q psy2889          12 TGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVSY----DRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus        12 ~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~~----~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      ++++..+|.|++|++++++++.+-+.   ..+.+.-+.......+|+....+++.    ...+....+..|+.++..+.+
T Consensus        29 ~~~Inflill~lL~~fl~kPI~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~  108 (184)
T CHL00019         29 TNLINLSVVLGVLIYFGKGVLSDLLDNRKQTILNTIRNSEERREEAIEKLEKARARLRQAELEADEIRVNGYSEIEREKE  108 (184)
T ss_pred             HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777778888888888888876553   34555555555555666555555544    444666777777888887777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL  159 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~  159 (163)
                      ....+|....+.++++|+.+++.....+..++..+       +-..+++.|..+.++-+........-..++++.
T Consensus       109 ~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~l~~e-------i~~lav~~A~kil~~~ld~~~~~~lid~~i~~l  176 (184)
T CHL00019        109 NLINQAKEDLERLENYKNETIRFEQQRAINQVRQQ-------VFQLALQRALGTLNSCLNNELHLRTINANIGLL  176 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHHH
Confidence            77777777777777777777777766666655444       445567777777777777777766666666654

>PRK06568 F0F1 ATP synthase subunit B; Validated

Probab=98.74  E-value=1.1e-05  Score=59.65  Aligned_cols=123  Identities=15%  Similarity=0.008  Sum_probs=89.7

Q ss_pred             ccccCchH-HHHHHHHHHHHHHHHHHHhHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           6 AIQSADTG-AHSHGIRRTIKCCFTKKFIWPPL-------IKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHE   77 (163)
Q Consensus         6 ~~l~~~~~-~~~~~i~Flil~~~l~~~l~~pi-------~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~   77 (163)
                      +++++.++ ++..+|.|+||..+.++.+.+-+       .+-|++-...=...-.--............+.+..+.+|+.
T Consensus         2 ~~~~~~fwq~I~FlIll~ll~kfawkPI~~~LeeR~~~I~~~Ld~Ae~~r~eA~~l~~e~e~~L~~Ar~EA~~Ii~~A~~   81 (154)
T PRK06568          2 NFLDESFWLAVSFVIFVYLIYRPAKKAILNSLDAKILEVQEKVLKAEKLKEDAALLFEQTNAQIKKLETLRSQMIEESNE   81 (154)
T ss_pred             CchHhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666655 46666777777778888888554       44454444333333333334455556677778889999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          78 ENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH  128 (163)
Q Consensus        78 ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~  128 (163)
                      .+..+++++..++....+.+++.|+.++++....|..++..+....--++-
T Consensus        82 ~a~~~~~ea~~eA~~ea~r~~~~A~~~Ie~Ek~~Al~elr~eva~Lav~iA  132 (154)
T PRK06568         82 VTKKIIQEKTKEIEEFLEHKKSDAIQLIQNQKSTASKELQDEFCDEVIKLV  132 (154)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999998888777766554443

>PRK13453 F0F1 ATP synthase subunit B; Provisional

Probab=98.73  E-value=1.2e-05  Score=60.41  Aligned_cols=114  Identities=12%  Similarity=0.068  Sum_probs=62.2

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPP-------LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKN   81 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~p-------i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~   81 (163)
                      ++-|+++..+|.|++|..++++.+.+-       |.+-+++-++.-...-..-............+....+.+++.++..
T Consensus        20 t~~~~iInFliL~~lL~~~l~~pi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~   99 (173)
T PRK13453         20 TVIVTVLTFIVLLALLKKFAWGPLKDVMDKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQ   99 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555555566666666666665533       3333333333333333333334444444555556666666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI  122 (163)
Q Consensus        82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~  122 (163)
                      +.++...+|....+.++.+|+.+++.....+..++..+...
T Consensus       100 ~~~~~~~~A~~ea~~~~~~A~~~I~~ek~~a~~~l~~ei~~  140 (173)
T PRK13453        100 QQEQIIHEANVRANGMIETAQSEINSQKERAIADINNQVSE  140 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666666666666666666666665555544443

>PRK13461 F0F1 ATP synthase subunit B; Provisional

Probab=98.73  E-value=1.3e-05  Score=59.39  Aligned_cols=142  Identities=15%  Similarity=0.033  Sum_probs=74.5

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKE----KVSYDRKRIQKELIATHEENKN   81 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~----ea~~~~~e~e~~L~~a~~ea~~   81 (163)
                      ++-|+++..+|.|++|.+++++.+.+-+.   ..+.+--+.......+|.....    .......+....+.+++.++..
T Consensus         7 ~~~~~~inF~il~~iL~~f~~kpi~~~l~~R~~~I~~~l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~   86 (159)
T PRK13461          7 TIIATIINFIILLLILKHFFFDKIKAVIDSRQSEIDNKIEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAEN   86 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555566666666666666654432   1222222233333333333333    3334444555556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889          82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN  157 (163)
Q Consensus        82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~  157 (163)
                      +.++...+|....+.++.+|+.+++.....+..++..+       +-..+..+|..+.++-++.......-+++++
T Consensus        87 ~~~~i~~~A~~ea~~~~~~a~~~i~~e~~~a~~~l~~e-------i~~lA~~~a~kil~~~~~~~~~~~li~~~i~  155 (159)
T PRK13461         87 VYEEIVKEAHEEADLIIERAKLEAQREKEKAEYEIKNQ-------AVDLAVLLSSKALEESIDESEHRRLIKDFIS  155 (159)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhHcCHHHHHHHHHHHHh
Confidence            66666666666666666666666655555554444433       3334455555555555555555555555544

>PRK13460 F0F1 ATP synthase subunit B; Provisional

Probab=98.72  E-value=1.5e-05  Score=59.92  Aligned_cols=49  Identities=20%  Similarity=0.292  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH  128 (163)
Q Consensus        80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~  128 (163)
                      +..+.+|+.++..+++++..+|....+.++..|+.+++...+++..++.
T Consensus        74 e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie  122 (173)
T PRK13460         74 EARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIE  122 (173)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444444555555555555555555555555555555444444444443

>PRK06231 F0F1 ATP synthase subunit B; Validated

Probab=98.70  E-value=1.1e-05  Score=62.22  Aligned_cols=142  Identities=9%  Similarity=-0.052  Sum_probs=67.4

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKN   81 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~   81 (163)
                      ++-++++..+|-+++|.+++|+.+.+-+.   ..+.+.-+...+...+|+....++    .+...+....+..|+.++..
T Consensus        50 ~~i~qlInFlIlv~lL~k~l~kPi~~~L~~R~~~I~~~L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~  129 (205)
T PRK06231         50 VFIAHLIAFSILLLLGIFLFWKPTQRFLNKRKELIEAEINQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQ  129 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555555555555544332   233333333333334443333333    33334445555555555555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889          82 RINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN  157 (163)
Q Consensus        82 ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~  157 (163)
                      +.+++..+|....+.++.+|+.++++...++..++..+       +.+-+...|..+.++-+...-+...-.++++
T Consensus       130 ~~e~i~~~A~~eae~ii~~A~~~Ie~Ek~~a~~~Lk~e-------i~~lAv~iA~kiL~k~ld~~~~~~lI~~~i~  198 (205)
T PRK06231        130 LKSELEKEANRQANLIIFQARQEIEKERRELKEQLQKE-------SVELAMLAAEELIKKKVDREDDDKLVDEFIR  198 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhCCHHHHHHHHHHHHH
Confidence            55555555555555555555555555555444443332       3333444455555554444444444444443

>CHL00118 atpG ATP synthase CF0 B' subunit; Validated

Probab=98.69  E-value=1.2e-05  Score=59.42  Aligned_cols=115  Identities=17%  Similarity=0.057  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE   95 (163)
Q Consensus        16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~   95 (163)
                      ++++.+++.|++|..++++-+-+-+.   +.+...-+.......+++....+    ......+.++.+.+|+.++..+++
T Consensus        23 ~t~~~~~inFliL~~lL~k~l~~Pi~---~~l~~R~~~I~~~l~~Ae~~~~e----a~~~~~e~e~~L~~A~~ea~~ii~   95 (156)
T CHL00118         23 ATLPLMALQFLLLMVLLNIILYKPLL---KVLDERKEYIRKNLTKASEILAK----ANELTKQYEQELSKARKEAQLEIT   95 (156)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56667777777777777666666641   22333333333344444444443    334455777788888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          96 KSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK  137 (163)
Q Consensus        96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~  137 (163)
                      ++..+|+...+.++..|+.+.+...+.++.++..+-...--+
T Consensus        96 ~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~  137 (156)
T CHL00118         96 QSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKS  137 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888888777665544333

>PRK14473 F0F1 ATP synthase subunit B; Provisional

Probab=98.68  E-value=2.5e-05  Score=58.12  Aligned_cols=144  Identities=11%  Similarity=0.024  Sum_probs=98.2

Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Q psy2889           8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENK   80 (163)
Q Consensus         8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~   80 (163)
                      .++-|+++..+|.|++|.+++|+.+.+-+.   ..+.+--+...+.-.+|+....+.    .....+....+.+|+.++.
T Consensus         9 ~~~~~~~inflil~~lL~~fl~kpi~~~l~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~l~~A~~ea~~ii~~A~~~a~   88 (164)
T PRK14473          9 GLLIAQLINFLLLIFLLRTFLYRPVLNLLNERTRRIEESLRDAEKVREQLANAKRDYEAELAKARQEAAKIVAQAQERAR   88 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355677777888888888888888775553   344444444455555555555555    4455557777888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQ  158 (163)
Q Consensus        81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~  158 (163)
                      .+.++...+|....+.++++++.+++.....+..++..       ++-+.+..+|..+.++-+...-+...-.+++++
T Consensus        89 ~~~~~~l~~A~~ea~~~~~~a~~~I~~ek~~a~~~L~~-------~i~~la~~~a~kil~~~l~~~~~~~li~~~i~~  159 (164)
T PRK14473         89 AQEAEIIAQARREAEKIKEEARAQAEQERQRMLSELKS-------QIADLVTLTASRVLGAELQARGHDALIAESLAA  159 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHhHcCHHHHHHHHHHHHHh
Confidence            87777777777777778888888777777776665544       445556777777777777766666666666654

>PRK14471 F0F1 ATP synthase subunit B; Provisional

Probab=98.66  E-value=2.8e-05  Score=57.86  Aligned_cols=136  Identities=15%  Similarity=0.034  Sum_probs=87.0

Q ss_pred             Cccccc-cccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
Q psy2889           1 MGLIYA-IQSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVS----YDRKRIQKEL   72 (163)
Q Consensus         1 ~~~~~~-~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~----~~~~e~e~~L   72 (163)
                      |.+..| .-++-|+++..+|.|++|..++++.+.+-+.   ..+.+--+...+.-.+|+....+.+    ....+....+
T Consensus         1 ~~~l~~~~~~~~~~~i~Flil~~ll~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~l~~A~~ea~~ii   80 (164)
T PRK14471          1 MDLLTPDFGLFFWQTILFLILLLLLAKFAWKPILGAVKEREDSIKNALASAEEARKEMQNLQADNERLLKEARAERDAIL   80 (164)
T ss_pred             CCcccCcHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455555 3355566666667777777777877765543   2344444444445555555444444    4555666678


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          73 IATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus        73 ~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll  143 (163)
                      .+|+.++..+.+++..+|....+.+++.|+.+++.....+..++..+....       +..+|..+.++-|
T Consensus        81 ~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l~~~i~~l-------a~~~a~kil~~~l  144 (164)
T PRK14471         81 KEAREIKEKMIADAKEEAQVEGDKMIEQAKASIESEKNAAMAEIKNQVANL-------SVEIAEKVLRKEL  144 (164)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHc
Confidence            888888888888888888888888888888888777777776666555544       3444444444444

>PRK13455 F0F1 ATP synthase subunit B; Provisional

Probab=98.59  E-value=5.9e-05  Score=57.17  Aligned_cols=117  Identities=9%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE  115 (163)
Q Consensus        36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~  115 (163)
                      |.+-+++=++.-.+....-.+...+......+.+..+.+|+.++..+.++...++....+.++++|+.+++....++..+
T Consensus        63 I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I~~ek~~a~~~  142 (184)
T PRK13455         63 IRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQIASAEAAAVKA  142 (184)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44444444333333333334444455556666677777777778777777777777777777777777777777776666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHHHH
Q psy2889         116 IIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLNQL  159 (163)
Q Consensus       116 i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~~~  159 (163)
                      +..+..       +-+.+.|..+.++-+........-.+++++.
T Consensus       143 l~~~i~-------~lA~~~a~kil~~~l~~~~~~~lid~~i~~l  179 (184)
T PRK13455        143 VRDRAV-------SVAVAAAADVIAKQMTAADANALIDEAIKEV  179 (184)
T ss_pred             HHHHHH-------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHH
Confidence            544433       3445555555555555555545555555443

>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b

Probab=98.54  E-value=9.7e-05  Score=53.81  Aligned_cols=136  Identities=15%  Similarity=0.058  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEENKNRINLTE   87 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea~~ii~~A~   87 (163)
                      +..+|.|+||..++++.+.+-+.   ..+.+--+.......+|.....++    .....+....+..++.++..+.+...
T Consensus         3 i~Flil~~il~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~   82 (147)
T TIGR01144         3 ISFILLVWFCMKYVWPPLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAK   82 (147)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456666666777777665442   344444444555555555544444    44555566778888899999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889          88 KQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN  157 (163)
Q Consensus        88 ~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~  157 (163)
                      .++....+.++++++.+++.....+..++..+....       +..++..+.++-++.......-+++++
T Consensus        83 ~~a~~e~~~~~~~a~~~i~~e~~~a~~~l~~~~~~l-------A~~~a~kll~~~l~~~~~~~lid~~i~  145 (147)
T TIGR01144        83 AEAREEREKIKAQARAEIEAEKEQAREELRKQVADL-------SVLGAEKIIERNIDKQAQKDLIDKLVA  145 (147)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHcCHHHHHHHHHHHHh
Confidence            999999999999999888888888877776665554       455555555555555444444444444

This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.

>PRK14474 F0F1 ATP synthase subunit B; Provisional

Probab=98.53  E-value=6.1e-05  Score=59.88  Aligned_cols=143  Identities=9%  Similarity=0.027  Sum_probs=84.6

Q ss_pred             cccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHH
Q psy2889           7 IQSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKV----SYDRKRIQKELIATHEEN   79 (163)
Q Consensus         7 ~l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea----~~~~~e~e~~L~~a~~ea   79 (163)
                      ..++-++++..+|.|++|..|+|+.+.+-+.   +.+.+.-+.......+|+....++    .....+....+.+|+.++
T Consensus         5 ~~t~~~qiInFlILv~lL~~fl~kPi~~~l~eR~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA   84 (250)
T PRK14474          5 WFTVVAQIINFLILVYLLRRFLYKPIIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAA   84 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455677777778888888888888775553   345555555555555555544444    445556666777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy2889          80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLL  156 (163)
Q Consensus        80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li  156 (163)
                      ..+.++...+|....+.++..++.+++.....+..++..+       +.+.+..+|..+..+.++.......-+.++
T Consensus        85 ~~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~L~~~-------v~~la~~~A~kiL~~~~d~~~~~~lid~~i  154 (250)
T PRK14474         85 DEQRQHLLNEAREDVATARDEWLEQLEREKQEFFKALQQQ-------TGQQMVKIIRAALADLANATLEQQIVGIFI  154 (250)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            7776666666666666666666666665555555544433       334445555555555444444444344443

>PRK08475 F0F1 ATP synthase subunit B; Validated

Probab=98.44  E-value=0.00013  Score=54.57  Aligned_cols=127  Identities=20%  Similarity=0.213  Sum_probs=90.4

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIE   95 (163)
Q Consensus        16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~   95 (163)
                      |.++--+|-+++|..++++-+-+-+   .+.+.+.-+.......++++...+.    .....++++++.+|+.++..+++
T Consensus        23 ~~~~~~~inflil~~lL~~fl~kPi---~~~l~~R~~~I~~~l~~Ae~~~~ea----~~~~~e~e~~L~~Ar~eA~~Ii~   95 (167)
T PRK08475         23 YDIIERTINFLIFVGILWYFAAKPL---KNFYKSRINKISKRLEEIQEKLKES----KEKKEDALKKLEEAKEKAELIVE   95 (167)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666777777777777665555   2233333334444444444444443    34456788889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCH
Q psy2889          96 KSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITI  149 (163)
Q Consensus        96 ~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~  149 (163)
                      ++..+|+...++++++|+.+.+..++++..++..+-...-.++=..+++.-++.
T Consensus        96 ~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ie~Ek~~a~~elk~eii~~~~~~  149 (167)
T PRK08475         96 TAKKEAYILTQKIEKQTKDDIENLIKSFEELMEFEVRKMEREVVEEVLNELFES  149 (167)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999888887666666655555554443

>PRK07353 F0F1 ATP synthase subunit B'; Validated

Probab=98.42  E-value=0.00019  Score=51.79  Aligned_cols=116  Identities=11%  Similarity=0.097  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLII   94 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~   94 (163)
                      -|+++..+|-|++|..++.+-+-+-+   .+.+.+.-+.......+++....+.+..    ..++++.+.+|+.++..++
T Consensus         5 ~~t~~~~~i~flil~~ll~~~l~~pi---~~~l~~R~~~I~~~l~~Ae~~~~ea~~~----~~~~e~~L~~a~~ea~~i~   77 (140)
T PRK07353          5 DATLPLMAVQFVLLTFILNALFYKPV---GKVVEEREDYIRTNRAEAKERLAEAEKL----EAQYEQQLASARKQAQAVI   77 (140)
T ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHH
Confidence            35566666666666666555555543   1222333333333333444444333333    3455666677777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          95 EKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK  137 (163)
Q Consensus        95 ~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~  137 (163)
                      ++...++..+.+.++..++.+++...+.+..++..+-...--+
T Consensus        78 ~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i~~e~~~a~~~  120 (140)
T PRK07353         78 AEAEAEADKLAAEALAEAQAEAQASKEKARREIEQQKQAALAQ  120 (140)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7777777777777777777777777777776666554443333

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=98.42  E-value=0.00029  Score=55.75  Aligned_cols=143  Identities=11%  Similarity=0.017  Sum_probs=74.9

Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH
Q psy2889           8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLI---KALDDRKKKIADILAAANSEKEKVSY----DRKRIQKELIATHEENK   80 (163)
Q Consensus         8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~---~~l~~R~~~I~~~l~~A~~~~~ea~~----~~~e~e~~L~~a~~ea~   80 (163)
                      .++-|+++..+|.|++|..++++.+.+-+.   +.+.+--+.......+|+....+++.    ...+....+.+|+.++.
T Consensus         6 ~t~~~qiInFlil~~lL~kfl~kPi~~~l~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~i~~~A~~eA~   85 (246)
T TIGR03321         6 FTVIAQLINFLILVWLLKRFLYRPILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQ   85 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345566677777777777777777765443   23444444444444445544444444    44444556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNSSLLN  157 (163)
Q Consensus        81 ~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~~li~  157 (163)
                      .+.++...+|....+.++..++.+++.....+..+       .+.++-..+...|..+.++.+........-+++++
T Consensus        86 ~~~~~i~~~A~~ea~~~~~~a~~~ie~E~~~a~~~-------l~~ei~~la~~~A~kil~~~~d~~~~~~lid~~i~  155 (246)
T TIGR03321        86 AERQRLLDEAREEADEIREKWQEALRREQAALSDE-------LRRRTGAEVFAIARKVLTDLADTDLEERMVDVFVQ  155 (246)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            55555555555544555554554444444444333       33444444555555555555554444444444443

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=98.39  E-value=5.4e-05  Score=55.98  Aligned_cols=98  Identities=16%  Similarity=0.098  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889          65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus        65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      ..+.+..|..|+.++..|+.+|+.+++..+++...+...+..+...........+..+....+..++.+++..+++++|+
T Consensus        12 ~~~A~~il~~A~~~a~~i~~~A~~~~e~~~~~g~~~G~~~g~~e~~~~~~~~~~~~~~~~~~~e~~l~~l~~~~~~kil~   91 (166)
T TIGR02499        12 LAQAQAILAAARQRAEAILADAEEEAEASRQLGYEQGLEQFWQEAAAQLAEWQQEAEQLEASLEERLAELVLQALEQILG   91 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            34778889999999999999999999998887777777776666666666777788888999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHhh
Q psy2889         145 NKITIEVNSSLLNQLKIE  162 (163)
Q Consensus       145 ~~i~~~~~~~li~~~i~~  162 (163)
                      ...+++.-..++...+..
T Consensus        92 ~~~~~e~l~~lv~~al~~  109 (166)
T TIGR02499        92 EYDEPERLVRLLRQLLRA  109 (166)
T ss_pred             CCCCHHHHHHHHHHHHHh
Confidence            987787777888777654

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK06328 type III secretion system protein; Validated

Probab=98.38  E-value=4.9e-05  Score=59.43  Aligned_cols=101  Identities=21%  Similarity=0.229  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      -..+.+.+..|..|+.++.+++.++..+++.+++++.++..++--..-.+.-..+..+.......+..++.++++.+|++
T Consensus        25 ~~~~~~A~~il~~a~~~ae~i~~ea~~e~E~i~eeA~~eGy~eG~~~~~~~~~~l~~~~~~~~~~~e~~lv~Lal~ia~k  104 (223)
T PRK06328         25 FSALLDAQELLEKTKEDSEAYTQETHEECEKLREEAKNQGFKEGSKAWSKQLAFLEEETQKLREQVKEALVPLAIASVKK  104 (223)
T ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555667778888888888888888888888877777666665544444445677777788888999999999999999


Q ss_pred             HHhhhcC--HHHHHHHHHHHHhh
Q psy2889         142 ILNNKIT--IEVNSSLLNQLKIE  162 (163)
Q Consensus       142 ll~~~i~--~~~~~~li~~~i~~  162 (163)
                      +++..++  ++.--.+|.+.|..
T Consensus       105 Vi~~el~~d~e~il~lV~~aL~~  127 (223)
T PRK06328        105 IIGKELELHPETIVSIIANSLKE  127 (223)
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHh
Confidence            9999774  67777888877764

>COG0711 AtpF F0F1-type ATP synthase, subunit b [Energy production and conversion]

Probab=98.36  E-value=0.00045  Score=51.36  Aligned_cols=114  Identities=13%  Similarity=0.021  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHhHHHHHHHH---HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          12 TGAHSHGIRRTIKCCFTKKFIWPPLIKAL---DDRKKKIADILAAA----NSEKEKVSYDRKRIQKELIATHEENKNRIN   84 (163)
Q Consensus        12 ~~~~~~~i~Flil~~~l~~~l~~pi~~~l---~~R~~~I~~~l~~A----~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~   84 (163)
                      |.++..++.++++++++++.+.+-+..--   .+--........++    .+...+..+...++...+..|+.++..+.+
T Consensus        11 ~~~i~F~ill~ll~~~~~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~~~~l~~Ar~~a~~Ii~~A~~~a~~~~~   90 (161)
T COG0711          11 WQLIAFVILLWLLKKFVWKPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAE   90 (161)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33344444445555566666654443322   22222222222222    233444444556667777777788888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          85 LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE  125 (163)
Q Consensus        85 ~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~  125 (163)
                      +.+.+++...+.+...|+.+++...+.+..++..+......
T Consensus        91 e~~~~a~~e~~r~~~~a~~~I~~e~~~a~~~l~~~~~~la~  131 (161)
T COG0711          91 EIKAEAEEELERIKEAAEAEIEAEKERALEELRAEVAELAV  131 (161)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888877777777777776666554443

>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.35  E-value=5.6e-05  Score=53.76  Aligned_cols=118  Identities=19%  Similarity=0.163  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          17 HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEK   96 (163)
Q Consensus        17 ~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~   96 (163)
                      +++..+|.|++|..+++.++.+-+.   ..+.+.-+.......+++....+.+.    ...+....+.+|+.++..++++
T Consensus         1 tl~~~~i~Flil~~~l~~~~~~pi~---~~l~~R~~~I~~~~~~a~~~~~ea~~----~~~e~~~~l~~a~~ea~~i~~~   73 (132)
T PF00430_consen    1 TLFWQLINFLILFFLLNKFLYKPIK---KFLDERKAKIQSELEEAEELKEEAEQ----LLAEYEEKLAEAREEAQEIIEE   73 (132)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTHHHHH---HHCS--S-HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHCHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            3556667777777888888777663   23333344444444455554444433    3456677777888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          97 SKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        97 ~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      +..+++...+.++..++.+++.....+..++..+......++-..
T Consensus        74 a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l~~~  118 (132)
T PF00430_consen   74 AKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKELRQE  118 (132)
T ss_dssp             HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888888888888777777666554444333

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.

>PF05405 Mt_ATP-synt_B: Mitochondrial ATP synthase B chain precursor (ATP-synt_B); InterPro: IPR008688 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.34  E-value=2.9e-05  Score=57.71  Aligned_cols=99  Identities=18%  Similarity=0.126  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQC----   90 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a----   90 (163)
                      ++.+++|+++++++++++.||+.+.+++|.+.|.+.+..+......+-...-++...+.........+.+-.+..+    
T Consensus        17 ~~v~~~f~~f~~~~~k~~g~~i~~~ld~~~~~i~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~~ke~~~~~~   96 (163)
T PF05405_consen   17 TLVALCFIIFIIFIYKKFGPSIAEWLDERIQKIEDELNQSRNDHIKALKERIEQVKKEQSLVEGTKMLFEASKENVALQL   96 (163)
T ss_dssp             -----------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            5678999999999999999999999999999999999999988877766655555555555444444444444333    


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          91 KLIIEKSKKKATEEANIILYNAR  113 (163)
Q Consensus        91 ~~~~~~~~~~A~~e~~~~~~~a~  113 (163)
                      +.-..........++.+.++..-
T Consensus        97 e~~~~~~~~~v~~evk~~Ld~~v  119 (163)
T PF05405_consen   97 EAFYREQQAAVAQEVKRRLDYWV  119 (163)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit B from the F0 complex in F-ATPases found in mitochondria of eukaryotes (metazoa, viridiplantae (plants and green algae), jakobidae and the malawimonadidae). The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2WSS_X 2CLY_D.

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=98.29  E-value=9.6e-05  Score=56.74  Aligned_cols=97  Identities=14%  Similarity=0.058  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAE  140 (163)
Q Consensus        61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~  140 (163)
                      .+....+.+..+.+|+.++..|+++|+.+++.+..+    |+.+++.............+.+....+++.+.+.......
T Consensus        17 ~eeA~~eA~~Ii~eA~~eAe~Ii~eA~~eAe~i~~k----Ae~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~   92 (198)
T PRK01558         17 LEEAERLANEIILEAKEEAEEIIAKAEEEAKELKAK----AEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALK   92 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            355667778888999999999999999998877444    6667777777777777788888888888888888888888


Q ss_pred             HHHhhhcCHHHHHHHHHHHHh
Q psy2889         141 KILNNKITIEVNSSLLNQLKI  161 (163)
Q Consensus       141 kll~~~i~~~~~~~li~~~i~  161 (163)
                      +.+...++++....++...+.
T Consensus        93 ~~~~~~~~~e~~~~li~~ll~  113 (198)
T PRK01558         93 DEVAEVYDSNFLRELIIRVVD  113 (198)
T ss_pred             HHHHHhcCHHHHHHHHHHHHH
Confidence            888888888888888877664

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=98.24  E-value=0.0006  Score=58.47  Aligned_cols=113  Identities=6%  Similarity=0.018  Sum_probs=77.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHhHHHHHH---HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          11 DTGAHSHGIRRTIKCCFTKKFIWPPLIK---ALDDRKKKIADILAAANSEKE----KVSYDRKRIQKELIATHEENKNRI   83 (163)
Q Consensus        11 ~~~~~~~~i~Flil~~~l~~~l~~pi~~---~l~~R~~~I~~~l~~A~~~~~----ea~~~~~e~e~~L~~a~~ea~~ii   83 (163)
                      -|+++..+|.|++|.+++++.+.+-+.+   .+.+--+...+.-.+++..+.    .......+.+..+.+|+.+++++.
T Consensus         5 i~qlInFlIl~~lL~kfl~~Pi~~~l~~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~   84 (445)
T PRK13428          5 IGQLIGFAVIVFLVWRFVVPPVRRLMAARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIA   84 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3566666677777778888777644322   222222222233444444433    366667778889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          84 NLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA  123 (163)
Q Consensus        84 ~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a  123 (163)
                      ++...++....+.+++.++.++++..+++..++..+....
T Consensus        85 ~~~~~~A~~ea~~i~~~a~~~Ie~ek~~a~~elr~ei~~l  124 (445)
T PRK13428         85 EQLRAQADAEAERIKVQGARQVQLLRAQLTRQLRLELGHE  124 (445)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888888888877766655443

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=98.21  E-value=0.00052  Score=53.07  Aligned_cols=98  Identities=15%  Similarity=0.192  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNL-AIKS  138 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~l-a~~~  138 (163)
                      ..+....+.+..+.+|+.++..|+++|+.+++.+.+++..++..+..    .+...++....++..+++.++.+- --..
T Consensus        21 iL~eA~~eA~~Il~eAk~~Ae~Ii~eA~~EAe~ii~~A~~eae~ek~----r~~s~a~l~~R~~~l~aKqevi~~vf~~a   96 (207)
T PRK01005         21 TLKPAEEEAGAIVHNAKEQAKRIIAEAQEEAEKIIRSAEETADQKLK----QGESALVQAGKRSLESLKQAVENKIFRES   96 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34445555566666666666666666666655555544444433333    444444444555555666666653 3345


Q ss_pred             HHHHHhhhc-CHHHHHHHHHHHHh
Q psy2889         139 AEKILNNKI-TIEVNSSLLNQLKI  161 (163)
Q Consensus       139 a~kll~~~i-~~~~~~~li~~~i~  161 (163)
                      .++++...+ |++.-.++|-..++
T Consensus        97 ~~~lv~~~~~d~~~l~~lI~~~v~  120 (207)
T PRK01005         97 LGEWLEHVLTDPEVSAKLIQALVQ  120 (207)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH
Confidence            567777777 67777777776554

>PRK06937 type III secretion system protein; Reviewed

Probab=98.08  E-value=0.00057  Score=52.61  Aligned_cols=100  Identities=10%  Similarity=0.057  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus        63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      ...-+.++.+..|+.++++|+.+|+...+..+++--++..+++..-..+.-.....+..+....+..++.++++.+++|+
T Consensus        27 ~~~~~A~~il~~A~~~A~~i~~~A~~~~e~~~~~Gy~~G~~~a~~e~~e~l~~~~~~~~~~~~~~e~~l~~Lvl~ia~ki  106 (204)
T PRK06937         27 QSLLSAEELVEAARQRAEEIEAEAQEVYEQQKQLGYQAGLDEARTEQAELILETVLQCQEFYRGVEQQMSEVVLEAVRKI  106 (204)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677788888888888888888877777776666655444332222222233456677899999999999999999


Q ss_pred             HhhhcCHHHHHHHHHHHHhh
Q psy2889         143 LNNKITIEVNSSLLNQLKIE  162 (163)
Q Consensus       143 l~~~i~~~~~~~li~~~i~~  162 (163)
                      ++...+++.-..++.+.+..
T Consensus       107 l~~~~~~e~i~~lv~~al~~  126 (204)
T PRK06937        107 LNDYDDVERTLQVVREALAL  126 (204)
T ss_pred             HhccCcHHHHHHHHHHHHHh
Confidence            99866666666777776654

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=98.05  E-value=0.0006  Score=52.04  Aligned_cols=98  Identities=13%  Similarity=0.124  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      +....++++.+.+|+.++.++++++..+|+...+.+...|+.+++.....+......+.....-..+.++.+-+..-+.+
T Consensus        13 ~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~~v~~~a~~   92 (198)
T PRK03963         13 REAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELISEVLEAVRE   92 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445566666666666776766666666666666666666555533333333333333333333334444444444444


Q ss_pred             HHhhhcCHHHHHHHHHHHH
Q psy2889         142 ILNNKITIEVNSSLLNQLK  160 (163)
Q Consensus       142 ll~~~i~~~~~~~li~~~i  160 (163)
                      -|.. ++++....++...|
T Consensus        93 ~l~~-~~~~~Y~~~l~~li  110 (198)
T PRK03963         93 RLAE-LPEDEYFETLKALT  110 (198)
T ss_pred             HHHh-hhhhhHHHHHHHHH
Confidence            4443 33345555555554

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=98.03  E-value=0.0002  Score=55.34  Aligned_cols=70  Identities=17%  Similarity=0.098  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          68 IQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        68 ~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      +++.+.+|+.++.+|+.+|+.+|+.    ++.+|+.++++++++|+.+++.++.++...+.-...+.-..+-..
T Consensus        18 ~~eiL~eA~~eA~~Il~eAk~~Ae~----Ii~eA~~EAe~ii~~A~~eae~ek~r~~s~a~l~~R~~~l~aKqe   87 (207)
T PRK01005         18 REETLKPAEEEAGAIVHNAKEQAKR----IIAEAQEEAEKIIRSAEETADQKLKQGESALVQAGKRSLESLKQA   87 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4778899999999999999999964    777778889999999999999999888885554444443333333

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=98.02  E-value=0.00078  Score=51.47  Aligned_cols=98  Identities=14%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889          65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus        65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      ..+++..|.+|+.+|++|+.+|+.+++.+.+....++.+..-+....--.....+.+.....+...+..+.....+++|+
T Consensus        29 ~~~a~~IL~~A~~qA~~Il~~Ae~eAe~l~~~a~e~a~~~~~q~a~~ll~~~~~~~e~l~~~l~~~~~~ll~~al~~lL~  108 (191)
T PF06188_consen   29 QQQAREILEDARQQAEQILQQAEEEAEALLEQAYEQAEAQFWQQANALLQEWQQQREQLLQQLEEQAEELLSQALERLLD  108 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55678899999999999999999999999995555555554444444444555667777777888888888888899998


Q ss_pred             hhcCHHHHHHHHHHHHhh
Q psy2889         145 NKITIEVNSSLLNQLKIE  162 (163)
Q Consensus       145 ~~i~~~~~~~li~~~i~~  162 (163)
                      +--++..-..++..++..
T Consensus       109 e~~~~qrv~aLlr~l~~~  126 (191)
T PF06188_consen  109 ETPDQQRVAALLRQLLAS  126 (191)
T ss_pred             cCCchHHHHHHHHHHHHh
Confidence            876677777777777653

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=98.02  E-value=0.00083  Score=50.91  Aligned_cols=100  Identities=16%  Similarity=0.127  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      +....+.++.+.+|+.++..|+.+|+++++.+..++..++..++..+...+......+.....-..+.++.+-....+..
T Consensus        12 ~~a~~e~~~I~~ea~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r~~s~a~~~~rr~~L~~r~~~l~~v~~~a~~   91 (188)
T PRK02292         12 DEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQELSSAKLEAKRERLNARKEVLEDVRNQVED   91 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556778889999999999999999999999999999999999999999999999999988888899988888888888


Q ss_pred             HHhhhcCHHHHHHHHHHHHhh
Q psy2889         142 ILNNKITIEVNSSLLNQLKIE  162 (163)
Q Consensus       142 ll~~~i~~~~~~~li~~~i~~  162 (163)
                      -|.. ++++....++...|.+
T Consensus        92 kL~~-~~~~~y~~~l~~li~~  111 (188)
T PRK02292         92 EIAS-LDGDKREELTKSLLDA  111 (188)
T ss_pred             HHHh-cchhhHHHHHHHHHHh
Confidence            7776 4444666777766653

>PRK09098 type III secretion system protein HrpB; Validated

Probab=97.97  E-value=0.0027  Score=50.04  Aligned_cols=97  Identities=10%  Similarity=0.074  Sum_probs=55.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q psy2889          59 EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYN-----------ARVEIIKQINIARENL  127 (163)
Q Consensus        59 ~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~-----------a~~~i~~e~~~a~~~l  127 (163)
                      .-...+..+.++.|++|+.++++|+.+|+.+|+.+++++..+++...++=...           .-.............+
T Consensus        32 ~~~~~~~~~~~~ila~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy~eG~~~a~~e~~~~~~~~~~~~~~~~~~~  111 (233)
T PRK09098         32 AALAAVHAERDAVLAAARARAERIVAEARAQAEAILEAARREADRSARRGYAAGLRQALAEWHARGADHAFAERRAARRM  111 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555566666666666666666666666666665555433322211111           1112222233555668


Q ss_pred             HHHHHHHHHHHHHHHHhhhcCHHHHHHHH
Q psy2889         128 HNEIVNLAIKSAEKILNNKITIEVNSSLL  156 (163)
Q Consensus       128 ~~~i~~la~~~a~kll~~~i~~~~~~~li  156 (163)
                      +.++.+++..+++++++.. +++.--..+
T Consensus       112 e~~Lv~lv~~~v~kiv~~~-d~~~ll~~v  139 (233)
T PRK09098        112 RERLAEIVAAAVEQIVLGE-DRAALFARA  139 (233)
T ss_pred             HHHHHHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            9999999999999999864 554433333

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=97.92  E-value=0.0024  Score=44.24  Aligned_cols=74  Identities=22%  Similarity=0.225  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIK  137 (163)
Q Consensus        64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~  137 (163)
                      .-......+.+|+.++.+++.+|+.++..+..++..+|+...+.+++.++.+++.+....+.+-+.++.++...
T Consensus        15 aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~k   88 (108)
T COG2811          15 AEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSK   88 (108)
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444555556666666666666666666666666666666666666666666666666666666666655553

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=97.86  E-value=0.0016  Score=49.54  Aligned_cols=99  Identities=13%  Similarity=0.013  Sum_probs=81.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus        63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      ....+.+..+.+|+.++.+|+.+|+.+++.+.+.+...++.++....+........+.....-..+.++.+-+..-+.+-
T Consensus        13 ea~~~a~~I~~eA~~~aeei~~ea~~~a~~~~~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~aree~I~~v~~~a~e~   92 (185)
T PRK01194         13 SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAEISRLKKSIIDKANIEARSIKREKRREILKDYLDIAYEH   92 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556677889999999999999999999999999999999999999888888888888888888888888888888888


Q ss_pred             HhhhcCHHHHHHHHHHHHh
Q psy2889         143 LNNKITIEVNSSLLNQLKI  161 (163)
Q Consensus       143 l~~~i~~~~~~~li~~~i~  161 (163)
                      |..-.+++....++...|.
T Consensus        93 L~~l~~~~~Y~~~L~~LI~  111 (185)
T PRK01194         93 LMNITKSKEYDSILNKMIE  111 (185)
T ss_pred             HHcccCCchHHHHHHHHHH
Confidence            8766633356666665553

>COG2811 NtpF Archaeal/vacuolar-type H+-ATPase subunit H [Energy production and conversion]

Probab=97.85  E-value=0.0021  Score=44.53  Aligned_cols=94  Identities=18%  Similarity=0.211  Sum_probs=66.3

Q ss_pred             HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy2889          51 LAAAN-SEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN-LH  128 (163)
Q Consensus        51 l~~A~-~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~-l~  128 (163)
                      +..++ .+....+....+.++.+.+|+.++.+|+.+|..+|....++.+..+++++.........+-+.+....... -.
T Consensus        12 Ik~aE~~ad~~IeeAkEe~~~~i~eAr~eareiieeaE~eA~~~~~e~l~~~~ee~e~ea~eI~~~ae~~~~~~~~ka~~   91 (108)
T COG2811          12 IKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAAE   91 (108)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            44444 34456777888889999999999999999999999999988888777776655555544444444444442 44


Q ss_pred             HHHHHHHHHHHHHHHh
Q psy2889         129 NEIVNLAIKSAEKILN  144 (163)
Q Consensus       129 ~~i~~la~~~a~kll~  144 (163)
                      ..+...++....++|.
T Consensus        92 ~k~~~~a~~~~~~~l~  107 (108)
T COG2811          92 GKVVEAALSEFLAILE  107 (108)
T ss_pred             hHHHHHHHHHHHHHhc
Confidence            5667777777666653

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=97.80  E-value=0.0014  Score=49.93  Aligned_cols=78  Identities=18%  Similarity=0.186  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889          67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus        67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      -.+..+.+|+.++++|+++|+.+++.+.+++..+|+.+++.+++.|+..++.++.++....+.++..--...=..++.
T Consensus         7 i~~~il~~A~~ea~~il~~A~~~a~~i~~~a~~~a~~~~~~i~~~a~~~ae~ek~r~~s~a~~e~r~~~l~ar~el~~   84 (198)
T PRK03963          7 IIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILRKAKTQAELEKQRIIANAKLEVRRKRLAVQEELIS   84 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667777788888888888888888888888888888888888887777777776666666655444444444433

>MTH00169 ATP8 ATP synthase F0 subunit 8; Provisional

Probab=97.72  E-value=0.00013  Score=46.47  Aligned_cols=45  Identities=16%  Similarity=0.037  Sum_probs=40.5

Q ss_pred             cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD   49 (163)
Q Consensus         5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~   49 (163)
                      ||++++.+   +++|.++.|+++|+++.+++.|.+.+.++.|......
T Consensus         1 MPQLd~~~f~sQ~~Wl~i~f~~ly~l~s~~iLPri~~~l~~R~~~~~~   48 (67)
T MTH00169          1 MPQLDSVTYLTQYIWTLIILFFLFSLLVNYILPKIQQQLVIRTKGVNS   48 (67)
T ss_pred             CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            67777763   4599999999999999999999999999999998877

>MTH00025 ATP8 ATP synthase F0 subunit 8; Validated

Probab=97.66  E-value=0.00013  Score=46.75  Aligned_cols=45  Identities=16%  Similarity=0.050  Sum_probs=39.7

Q ss_pred             cccccCch---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADT---GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD   49 (163)
Q Consensus         5 ~~~l~~~~---~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~   49 (163)
                      ||+++|.+   +++|.++.|+++++++.+++.|.+.+.+..|.....+
T Consensus         1 MPQLd~~~f~nQi~W~~i~f~il~~l~sk~iLP~i~~~~~~R~~i~k~   48 (70)
T MTH00025          1 MPQLDTTTYLTQYRWTLIVLFLLLFFLVFFVLPTIKRNWLIRKSLMKK   48 (70)
T ss_pred             CCCcchhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            67887774   4599999999999999999999999999999987754

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=97.65  E-value=0.01  Score=47.88  Aligned_cols=105  Identities=21%  Similarity=0.240  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHH---HHHHHHHH
Q psy2889          58 KEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKA------------TEEANIILYNARV---EIIKQINI  122 (163)
Q Consensus        58 ~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A------------~~e~~~~~~~a~~---~i~~e~~~  122 (163)
                      ...+.+...+.+..+.+++.+++.++.+++.+++..++++.++.            ..+....+.....   .+......
T Consensus        80 ~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~~~~~a~~eGy~eG~~~g~~e~~~e~~~~~~~l~~~~~~l~~~~~~  159 (281)
T PRK06669         80 KEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQLNKIIEKLIKKREE  159 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555555555555555555554444332            2233333333222   23345555


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHHhh
Q psy2889         123 ARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLKIE  162 (163)
Q Consensus       123 a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i~~  162 (163)
                      ....+..++.++++.+|+++++..++  +..-..++...+..
T Consensus       160 ~l~~~e~elv~Lal~iaekvi~~~~~~~~~~i~~li~~al~~  201 (281)
T PRK06669        160 ILESSEEEIVELALDIAKKVIKEISENSKEIALALVKELLKE  201 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHH
Confidence            66678889999999999999977664  44445667666654

>PRK08404 V-type ATP synthase subunit H; Validated

Probab=97.57  E-value=0.011  Score=40.74  Aligned_cols=54  Identities=15%  Similarity=0.109  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIK  118 (163)
Q Consensus        65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~  118 (163)
                      ...|+..+.+|+.++..|++.|+.+++.....++.+++.++..+...++..+..
T Consensus        38 ~k~~~eii~eA~~eA~~ile~Ak~eie~Ek~~a~~elk~eia~L~~~a~~k~~~   91 (103)
T PRK08404         38 KKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFET   91 (103)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444455555555555555555555555555555555555555544444443

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.54  E-value=0.0087  Score=45.21  Aligned_cols=97  Identities=14%  Similarity=0.115  Sum_probs=65.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus        64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll  143 (163)
                      ...+.+..+.+|+.+++.++.++..++....+.....+..+++............+.....-..+.++.+-..+-+.+-|
T Consensus         6 A~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~~~~~~~L   85 (198)
T PF01991_consen    6 AQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVFEEVKEKL   85 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555666677777777777777777777777777777777777777777777777777777777777777777666666


Q ss_pred             hhhcCHH-HHHHHHHHHH
Q psy2889         144 NNKITIE-VNSSLLNQLK  160 (163)
Q Consensus       144 ~~~i~~~-~~~~li~~~i  160 (163)
                      ..-..+. .-..++..+|
T Consensus        86 ~~~~~~~~~Y~~~L~~li  103 (198)
T PF01991_consen   86 KSFSKDPDDYKKFLKKLI  103 (198)
T ss_dssp             HCTTCCC-THHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHH
Confidence            6544332 4444444444

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PF02326 YMF19: Plant ATP synthase F0; InterPro: IPR003319 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.44  E-value=0.00099  Score=44.48  Aligned_cols=67  Identities=16%  Similarity=0.018  Sum_probs=54.2

Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           8 QSADTGAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIA   74 (163)
Q Consensus         8 l~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~   74 (163)
                      ++.-.+++|.++.|+++++++.+++.|.+.+.+.-|...+.+..........+.......+...+.+
T Consensus         6 ~tf~sQ~fW~~i~f~~~y~~~~~~~lP~i~~~lk~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   72 (86)
T PF02326_consen    6 VTFFSQYFWLLIFFFFFYIFLVNFILPKISRILKLRSKLSSSSISSKSKLNSESSKLSVSYDKLLSN   72 (86)
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhhHHHHHHHH
Confidence            3444566999999999999999999999999999999999998877776666666666655555544

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 (or ymf19) found in the F0 complex of mitochondrial F-ATPases from plants and algae. This subunit is sometimes found in association and N-terminal to IPR009455 from INTERPRO, in higher plants. Subunit 8 differs in sequence between plants, Metazoa (IPR001421 from INTERPRO) and fungi (IPR009230 from INTERPRO) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=97.37  E-value=0.01  Score=45.55  Aligned_cols=67  Identities=12%  Similarity=0.094  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENL  127 (163)
Q Consensus        61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l  127 (163)
                      ..+..++.+..+.+|+.+++.|+..|+.+++.....+...+.....+.+..+++.|..........+
T Consensus        28 i~eA~~eAe~Ii~eA~~eAe~i~~kAe~ea~~~~~~~~saa~l~~r~~ll~~k~~i~~~~~~~~~~~   94 (198)
T PRK01558         28 ILEAKEEAEEIIAKAEEEAKELKAKAEKEANDYKRHALEASRQAGRDLLISFEKSIKSLFKAALKDE   94 (198)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667777888888888888888888888888888888888888888888888865554444444

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=97.29  E-value=0.013  Score=40.35  Aligned_cols=55  Identities=16%  Similarity=0.195  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          72 LIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIAREN  126 (163)
Q Consensus        72 L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~  126 (163)
                      |..|..+|..|+.+|+......+.++..+|..+++....................
T Consensus         9 Ll~AE~eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~~~   63 (105)
T PF03179_consen    9 LLEAEKEAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAEGE   63 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S------H
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            4455555555555555555555555555555544444444444444444444333

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=97.23  E-value=0.017  Score=43.57  Aligned_cols=77  Identities=14%  Similarity=0.170  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy2889          71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI  147 (163)
Q Consensus        71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i  147 (163)
                      ...+|+.++++|+.+|+.+++.+..++..+++...+...+.++.+++..+.........+.-......-..++..-+
T Consensus         2 I~~eA~~ka~~I~~eA~~e~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~r~~~l~~k~~~i~~v~   78 (198)
T PF01991_consen    2 IEEEAQEKAEEIIAEAQEEAEKILEEAEEEAEKEIEEIIEKAEKEAEQEKEREISKAELEARRELLEAKQEIIDEVF   78 (198)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999988888887777777766666666555555443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=96.99  E-value=0.036  Score=42.07  Aligned_cols=33  Identities=15%  Similarity=-0.008  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          80 KNRINLTEKQCKLIIEKSKKKATEEANIILYNA  112 (163)
Q Consensus        80 ~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a  112 (163)
                      ..+...++.++....+++...|+-++.+.+-.+
T Consensus        45 ~~~~~k~~~e~~~~~~riis~A~Le~R~~~L~a   77 (185)
T PRK01194         45 EYYEKKMRAEISRLKKSIIDKANIEARSIKREK   77 (185)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            334444445555555555555555444444444

>TIGR02926 AhaH ATP synthase archaeal, H subunit

Probab=96.96  E-value=0.051  Score=35.93  Aligned_cols=62  Identities=19%  Similarity=0.185  Sum_probs=38.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI  122 (163)
Q Consensus        61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~  122 (163)
                      ......+....+..|+.++..++.++..+|......++..|+.+++.....+..++..+...
T Consensus        15 l~~A~~ea~~Ii~~A~~~A~~~~~~a~~~A~~ea~~ii~~Ak~ei~~e~~~a~~e~k~ev~~   76 (85)
T TIGR02926        15 IEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEA   76 (85)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555566666666666666666666666666666666666666666666665555555443

he A1/A0 ATP synthase is homologous to the V-type (V1/V0, vacuolar) ATPase, but functions in the ATP synthetic direction as does the F1/F0 ATPase of bacteria. The hydrophilic A1 "stalk" complex (AhaABCDEFG) is the site of ATP generation and is coupled to the membrane-embedded proton translocating A0 complex. It is unclear precisely where AhaH fits into these complexes.

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=96.86  E-value=0.12  Score=39.53  Aligned_cols=85  Identities=16%  Similarity=0.124  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889          65 RKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus        65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      .++.+..+.+|+.+++.|.+++...++...+.+...++.+++............+-.+..-+.+.++.+-....+..-|.
T Consensus        16 ~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~~~~~~~e~L~   95 (194)
T COG1390          16 EEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILESVFEAVEEKLR   95 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777788888888888888888888888888888888888888877777777777777777777777777777777


Q ss_pred             hhcCH
Q psy2889         145 NKITI  149 (163)
Q Consensus       145 ~~i~~  149 (163)
                      .-.++
T Consensus        96 ~i~~~  100 (194)
T COG1390          96 NIASD  100 (194)
T ss_pred             cCcCC
Confidence            65543

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=96.83  E-value=0.066  Score=40.48  Aligned_cols=37  Identities=8%  Similarity=0.174  Sum_probs=20.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          64 DRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKK  100 (163)
Q Consensus        64 ~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~  100 (163)
                      ...+.+..+.+|+.++.++..++..+++.....+...
T Consensus        25 a~~~~~~i~~ea~~~a~~i~~~~~~~a~~e~~~~~~r   61 (188)
T PRK02292         25 ADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQ   61 (188)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455566666666666555555555555555443

>PRK06569 F0F1 ATP synthase subunit B'; Validated

Probab=96.80  E-value=0.13  Score=38.09  Aligned_cols=127  Identities=10%  Similarity=0.053  Sum_probs=73.7

Q ss_pred             CchHHHH---HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          10 ADTGAHS---HGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT   86 (163)
Q Consensus        10 ~~~~~~~---~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A   86 (163)
                      |.+...+   +++-++|.|++|+.++++-+..-+   ..-+...-+.......+|+....+    ..+++.+.++.+.+|
T Consensus         2 PQfd~~~~~sqifw~iI~FlILy~ll~kf~~ppI---~~iLe~R~~~I~~~L~~Ae~~k~e----Ae~l~a~ye~~L~~A   74 (155)
T PRK06569          2 PQFDIATYYSQIFWLIVTFGLLYIFVYKFITPKA---EEIFNNRQTNIQDNITQADTLTIE----VEKLNKYYNEEIDKT   74 (155)
T ss_pred             CCCchhhhhHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHHHHHhHHHHHHHHHHH----HHHHHHHHHHHHHHH
Confidence            4444443   344444555666666555544433   223333444444455555554444    455566778888889


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHH
Q psy2889          87 EKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE-------NLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus        87 ~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-------~l~~~i~~la~~~a~kll  143 (163)
                      +.++..+..+..+.+..++........+++-.-..+-.+       +++.+..+--+.++..+.
T Consensus        75 r~eA~~I~~e~~~~~~a~~~~~~~~~ea~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~i~  138 (155)
T PRK06569         75 NTEIDRLKKEKIDSLESEFLIKKKNLEQDLKNSINQNIEDINLAAKQFRTNKSEAIIKLAVNII  138 (155)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            999999988888888888777777766665544444333       444444444444444444

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=96.62  E-value=0.14  Score=39.20  Aligned_cols=77  Identities=22%  Similarity=0.223  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889          69 QKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN  145 (163)
Q Consensus        69 e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~  145 (163)
                      +..+.+++.++++|..+|..+++.+.+++...+....+.....++.+.+..+..+......++.......-+++|..
T Consensus         9 ~~I~~~a~eeak~I~~eA~~eae~i~~ea~~~~~~~~~~~~~~~~~ea~~~~~~iis~A~le~r~~~Le~~ee~l~~   85 (194)
T COG1390           9 KKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRIISSALLEARRKLLEAKEEILES   85 (194)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566667777777777777777777776666666666666666666666666665555555555555555444

>TIGR01069 mutS2 MutS2 family protein

Probab=96.58  E-value=0.11  Score=47.71  Aligned_cols=77  Identities=16%  Similarity=0.132  Sum_probs=60.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILY  110 (163)
Q Consensus        34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~  110 (163)
                      .-+..-|++.+..++....++++.+.+++....+|+.++.+.+.+..+++.+|+.++..+..++..+++.-...+.+
T Consensus       514 ~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~~~~~i~~lk~  590 (771)
T TIGR01069       514 NVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKALKKEVESIIRELKE  590 (771)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44555666777778888888899999999999999999999999999999999988888777776666555555543

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=96.54  E-value=0.15  Score=46.81  Aligned_cols=76  Identities=17%  Similarity=0.243  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          34 PPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIIL  109 (163)
Q Consensus        34 ~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~  109 (163)
                      .-+..-|++.+........+++..+.+++....+|+.+....+.+...++++++.++.....++..+++.-...+.
T Consensus       519 ~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~~~~~i~~lk  594 (782)
T PRK00409        519 NELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELR  594 (782)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445556666666777778888888888888888888888888888888888888888777666655555444444

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=96.51  E-value=0.12  Score=36.24  Aligned_cols=35  Identities=6%  Similarity=0.002  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889         112 ARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK  146 (163)
Q Consensus       112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~  146 (163)
                      +..+++.+...-..+++.....-.-.++..+|..-
T Consensus        69 ~~~~l~~et~~ki~~ik~~~~~~~~~Vv~~Ll~~V  103 (113)
T TIGR01147        69 AEEKAEAETQAKIREIKKAVQKNKDAVIKDLLHLV  103 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            45556666666666666666666666666665543

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit

Probab=96.49  E-value=0.15  Score=34.97  Aligned_cols=47  Identities=19%  Similarity=0.199  Sum_probs=20.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNAR  113 (163)
Q Consensus        67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~  113 (163)
                      +....+.+|+.+...++.+|+.+|+.+++....+...+.........
T Consensus        15 eA~~iV~~Ar~~r~~~lk~Ak~eA~~ei~~~r~~~e~~~~~~~~~~~   61 (105)
T PF03179_consen   15 EAQEIVEEARKEREQRLKQAKEEAEKEIEEFRAEAEEEFKEKEAEAE   61 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            34444445555555555555555555555544444444444444433

V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=96.30  E-value=0.15  Score=38.96  Aligned_cols=24  Identities=8%  Similarity=0.335  Sum_probs=11.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          76 HEENKNRINLTEKQCKLIIEKSKK   99 (163)
Q Consensus        76 ~~ea~~ii~~A~~~a~~~~~~~~~   99 (163)
                      ..++.+|+++|+.+|+.++.++..
T Consensus        29 ~~~a~~IL~~A~~qA~~Il~~Ae~   52 (191)
T PF06188_consen   29 QQQAREILEDARQQAEQILQQAEE   52 (191)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334445555555544444444333

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>PRK12704 phosphodiesterase; Provisional

Probab=96.20  E-value=0.34  Score=42.54  Aligned_cols=6  Identities=0%  Similarity=-0.352  Sum_probs=2.3

Q ss_pred             HHHHHH
Q psy2889          15 HSHGIR   20 (163)
Q Consensus        15 ~~~~i~   20 (163)
                      ++.++.
T Consensus         8 ~~~ivg   13 (520)
T PRK12704          8 LIALVA   13 (520)
T ss_pred             HHHHHH
Confidence            333333

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=96.18  E-value=0.46  Score=37.42  Aligned_cols=54  Identities=17%  Similarity=0.255  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHHhh
Q psy2889         109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLKIE  162 (163)
Q Consensus       109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i~~  162 (163)
                      ...-........+.....+..++.++++.++.++|+..+.  ++.-..+|.+.+..
T Consensus        97 ~~~li~~~~~~~~~~~~~~e~qLv~lvl~ia~~Vi~~~~~~~~~~ll~~v~e~L~~  152 (234)
T COG1317          97 LAKLIAEFQAELEALKEVVEKQLVQLVLEIARKVIGKELELDPEALLAAVREALEE  152 (234)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcCHHHHHHHHHHHHHh
Confidence            3344444555566666688899999999999999998774  46666777766654

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=96.10  E-value=0.46  Score=36.68  Aligned_cols=95  Identities=12%  Similarity=0.046  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2889          66 KRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNN  145 (163)
Q Consensus        66 ~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~  145 (163)
                      .+..+-+..|+.++.+|...|+..-+..+..--.+...+........-.+--.+....+..|.+++.+|++.++.+|||.
T Consensus        30 ~da~~~~aAA~~~A~~ir~~Ar~ayE~~rarGyeeG~~~g~e~~A~llaqa~a~v~r~~a~LE~~l~~LVl~~Vr~ILg~  109 (207)
T PF06635_consen   30 RDAAAFLAAARREAQRIREWARAAYERERARGYEEGRRAGAEQAARLLAQATAEVARYLAGLEQELAELVLEIVRKILGE  109 (207)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            34455677888888888888888887777766666554433333333233344455666778899999999999999997


Q ss_pred             hcCHHHHHHHHHHHH
Q psy2889         146 KITIEVNSSLLNQLK  160 (163)
Q Consensus       146 ~i~~~~~~~li~~~i  160 (163)
                      -=+.+.-.+.+...|
T Consensus       110 fd~~ell~r~vr~Al  124 (207)
T PF06635_consen  110 FDPDELLVRAVRQAL  124 (207)
T ss_pred             CChHHHHHHHHHHHH
Confidence            655555555554444

The function of this family is unclear.; GO: 0009877 nodulation

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=96.09  E-value=0.54  Score=37.37  Aligned_cols=103  Identities=18%  Similarity=0.116  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHH
Q psy2889          41 DDRKKKIADILAAANSEK----EKVSYDRKRIQKELIATHEENKNRINLTEKQCKLI--------IEKSKKKATEEANII  108 (163)
Q Consensus        41 ~~R~~~I~~~l~~A~~~~----~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~--------~~~~~~~A~~e~~~~  108 (163)
                      .+++..+.+.-.+|..-.    .+++....+.+..+.+++.++.+++++|+.++-..        ........-.++..+
T Consensus        40 ~~~~~~l~~Ar~eA~~Ii~~A~~~a~~~~~~~~~~~~~~~~e~e~~~e~A~~eGy~eG~~~G~~e~~~~~~~~i~~a~~i  119 (255)
T TIGR03825        40 QEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTIDEANAI  119 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444444544444444332    33334444444445666667777777666652110        001111112234455


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889         109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus       109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll  143 (163)
                      +..++.......+.+..++-.-+..+|-.+..+-|
T Consensus       120 ~~~a~~~~~~~l~~~e~el~~La~~iAeKIi~~el  154 (255)
T TIGR03825       120 VEEAKDDYEEKIESAQPLIIELACALAEKVIGVSL  154 (255)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66676666666667777777777777766666655

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>KOG3976|consensus

Probab=95.65  E-value=0.82  Score=36.05  Aligned_cols=60  Identities=18%  Similarity=0.034  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          16 SHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT   75 (163)
Q Consensus        16 ~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a   75 (163)
                      +..++|++|+.+..+.+.|.+.++.+++-++|.+.++.+.+..-++-...-+.++.+...
T Consensus        99 ~~~~s~lgl~~~~~k~~g~ai~~~adk~~~k~~~~~~~arq~~ik~i~d~id~~~sqq~~  158 (247)
T KOG3976|consen   99 ISTLSFLGLTGLAIKKLGPAIADWADKLIEKILSQLEEARQAHIKAISDAIDTEKSQQAL  158 (247)
T ss_pred             hhhhHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhHHH
Confidence            567899999999999999999999999999999999999887766655555555555443

>KOG1772|consensus

Probab=95.12  E-value=0.68  Score=31.91  Aligned_cols=30  Identities=7%  Similarity=0.038  Sum_probs=13.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889         114 VEIIKQINIARENLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus       114 ~~i~~e~~~a~~~l~~~i~~la~~~a~kll  143 (163)
                      .+++.+...-..+|+..+....-++...+|
T Consensus        71 ~~~e~~t~~ki~~lk~~~~k~~~~Vv~~LL  100 (108)
T KOG1772|consen   71 KRLEQETDDKIAGLKTSAQKNSDDVVDMLL  100 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence            334444444444444444444444444444

>PRK00106 hypothetical protein; Provisional

Probab=95.04  E-value=2.3  Score=37.57  Aligned_cols=54  Identities=11%  Similarity=0.015  Sum_probs=35.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQI  120 (163)
Q Consensus        67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~  120 (163)
                      +.++.+.+|+.+++.++++|..+++....+...++++++.+...+.+.++..++
T Consensus        43 ~A~~IleeAe~eAe~I~keA~~EAke~~ke~~lEaeeEi~~~R~ElEkel~eEr   96 (535)
T PRK00106         43 EAVNLRGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSER   96 (535)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333555667777777777777777777777777777777666666665553333

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=94.56  E-value=0.42  Score=33.26  Aligned_cols=54  Identities=24%  Similarity=0.279  Sum_probs=41.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHHHHHHHHH
Q psy2889         107 IILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNSSLLNQLK  160 (163)
Q Consensus       107 ~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~~li~~~i  160 (163)
                      ..+...-..++........+++.++.+++..+|+++++..++  ++.-..++.+.+
T Consensus         5 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~vi~~~l~~~~~~i~~~i~~al   60 (128)
T PF02108_consen    5 AELEQLLEELEEALQELLEELEQELVELALAIAEKVIGRELEEDPEAILNLIREAL   60 (128)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            344556666777788888889999999999999999998875  555556666655

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=94.34  E-value=1.5  Score=32.09  Aligned_cols=13  Identities=8%  Similarity=0.184  Sum_probs=4.7

Q ss_pred             HHHHHHHHHHHHH
Q psy2889          81 NRINLTEKQCKLI   93 (163)
Q Consensus        81 ~ii~~A~~~a~~~   93 (163)
                      +|+++|+.+|+.+
T Consensus        17 ~il~~A~~~a~~i   29 (166)
T TIGR02499        17 AILAAARQRAEAI   29 (166)
T ss_pred             HHHHHHHHHHHHH
Confidence            3333333333333

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=94.27  E-value=2.1  Score=33.70  Aligned_cols=55  Identities=13%  Similarity=0.202  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--CHHHHHHHHHHHHhhC
Q psy2889         109 LYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKI--TIEVNSSLLNQLKIEL  163 (163)
Q Consensus       109 ~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i--~~~~~~~li~~~i~~l  163 (163)
                      +......++........+++..+.+||..+|+++++..+  +|+.--.+|.+.|+.|
T Consensus       102 Le~L~e~le~~l~~~~~~~~~~ll~La~~iA~~vi~~el~~~p~~il~~v~eaL~~l  158 (236)
T PRK13386        102 LGALRQQLERYLAEYEQQQRDELLDLVEKVTRQVIRCELTLQPQQILALVEETLAAL  158 (236)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhc
Confidence            344445555666666777888999999999999999988  5777778888877653

>TIGR01069 mutS2 MutS2 family protein

Probab=94.06  E-value=2.6  Score=38.87  Aligned_cols=89  Identities=15%  Similarity=0.131  Sum_probs=56.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE  115 (163)
Q Consensus        36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~  115 (163)
                      -..++......+..-++.-+..+.+.+....+.+..+.+++....+ +++...+.+....+++.+|+.++.+++.+++.+
T Consensus       502 A~~~~~~~~~~~~~li~~L~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~a~~ea~~~~~~a~~~  580 (771)
T TIGR01069       502 AKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKE-LEQEMEELKERERNKKLELEKEAQEALKALKKE  580 (771)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666655444333 444555566667777777777777777777776


Q ss_pred             HHHHHHHHHH
Q psy2889         116 IIKQINIARE  125 (163)
Q Consensus       116 i~~e~~~a~~  125 (163)
                      ++.-..+.++
T Consensus       581 ~~~~i~~lk~  590 (771)
T TIGR01069       581 VESIIRELKE  590 (771)
T ss_pred             HHHHHHHHHh
Confidence            6665555443

Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=93.75  E-value=1.3  Score=29.33  Aligned_cols=60  Identities=17%  Similarity=0.152  Sum_probs=31.0

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT   75 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a   75 (163)
                      +.-.+.|++|++++.+++ +.+.+.+++=...+..--.+......++.....+.+..+.+.
T Consensus         4 lI~Aiaf~vLvi~l~~~l-~~l~~~l~~~~~ti~~l~~~~~~i~~e~~~ll~~~n~l~~dv   63 (90)
T PF06103_consen    4 LIAAIAFAVLVIFLIKVL-KKLKKTLDEVNKTIDTLQEQVDPITKEINDLLHNTNELLEDV   63 (90)
T ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455677777777665543 334445554444444444444444444444444444444443

>PRK15322 invasion protein OrgB; Provisional

Probab=93.55  E-value=2.7  Score=32.42  Aligned_cols=92  Identities=8%  Similarity=0.090  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy2889          67 RIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNK  146 (163)
Q Consensus        67 e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~  146 (163)
                      -.+..+.+|+.+|.+|+.+|+.+++.++..+..+.-..-   +.++...++.-...-. .+.....+-..+-+..++...
T Consensus        13 ~a~~l~~qA~~kA~~ii~qA~~eaE~ir~~A~~~GYq~G---l~qa~~~la~~~a~~~-~l~~~l~~~ie~~~r~lls~~   88 (210)
T PRK15322         13 SAERLEQQARRRAKRILRQAEEEAETLRMYAYQEGYEQG---MIDALQQVAAYLTDNQ-TMAWKWMEKIQIYARELFSAA   88 (210)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence            344556778888888888888888888877766544332   3444444443333222 122233333344566777777


Q ss_pred             cC-HHHHHHHHHHHHhh
Q psy2889         147 IT-IEVNSSLLNQLKIE  162 (163)
Q Consensus       147 i~-~~~~~~li~~~i~~  162 (163)
                      +| |+.--.+++.++.+
T Consensus        89 Ld~pd~LL~~le~Wl~~  105 (210)
T PRK15322         89 VDHPETLLTVLDEWLRD  105 (210)
T ss_pred             ccCHHHHHHHHHHHHHh
Confidence            76 67777788877764

>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed

Probab=93.37  E-value=6.6  Score=36.34  Aligned_cols=88  Identities=15%  Similarity=0.179  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE  115 (163)
Q Consensus        36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~  115 (163)
                      -..++.+....+..-+...++.+.+.++...+.+..+.+++....+ ++....+.+...++++.++++++.+++.+++.+
T Consensus       507 A~~~~~~~~~~~~~li~~l~~~~~~~e~~~~~~~~~~~e~~~~~~~-l~~~~~~l~~~~~~~~~~~~~~a~~~l~~a~~~  585 (782)
T PRK00409        507 AKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEE-LEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKE  585 (782)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666677777777777766666666666666655444333 334444556666667777777777777777766


Q ss_pred             HHHHHHHHH
Q psy2889         116 IIKQINIAR  124 (163)
Q Consensus       116 i~~e~~~a~  124 (163)
                      ++.-..+.+
T Consensus       586 ~~~~i~~lk  594 (782)
T PRK00409        586 ADEIIKELR  594 (782)
T ss_pred             HHHHHHHHH
Confidence            555444444

>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences

Probab=93.17  E-value=1.5  Score=33.50  Aligned_cols=21  Identities=10%  Similarity=-0.110  Sum_probs=1.3

Q ss_pred             HHHHHHHHHHHHHHHHhHHHH
Q psy2889          16 SHGIRRTIKCCFTKKFIWPPL   36 (163)
Q Consensus        16 ~~~i~Flil~~~l~~~l~~pi   36 (163)
                      |.++..+|++++++..+.+++
T Consensus        38 Wyil~~~I~ly~l~qkl~~~~   58 (190)
T PF06936_consen   38 WYILFGCILLYLLWQKLSPSF   58 (190)
T ss_dssp             ------------------HHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            544444444444444444444

SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.

>PF01741 MscL: Large-conductance mechanosensitive channel, MscL; InterPro: IPR001185 Mechanosensitive ion channels (MscL) play a critical role in transducing physical stresses at the cell membrane into an electrochemical response

Probab=92.93  E-value=0.29  Score=35.06  Aligned_cols=32  Identities=22%  Similarity=0.095  Sum_probs=24.6

Q ss_pred             CchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889          10 ADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDD   42 (163)
Q Consensus        10 ~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~   42 (163)
                      +.++. +-.+|||+|..+++ +++.+|+.++..+
T Consensus        68 i~yG~Fl~a~I~FlIiA~vv-Flivk~~nk~~~~  100 (128)
T PF01741_consen   68 IPYGAFLNALINFLIIAFVV-FLIVKPINKLKKK  100 (128)
T ss_dssp             E-HCHHHHHHHHHHHHHHHH-HHCHHHHHHCHHT
T ss_pred             eeHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhh
Confidence            44554 78899999999999 7788999888433

MscL is a protein which forms a channel organised as a homopentamer, with each subunit containing two transmembrane regions []. Prokaryotes harbor a large-conductance mechanosensitive channel (gene mscL) that opens in response to stretch forces in the membrane lipid bilayer and may participate in the regulation of osmotic pressure changes within the cell [].; GO: 0005216 ion channel activity, 0006810 transport, 0016021 integral to membrane; PDB: 3HZQ_A 2OAR_A.

>PF12072 DUF3552: Domain of unknown function (DUF3552); InterPro: IPR022711 This presumed domain is functionally uncharacterised

Probab=92.91  E-value=3.3  Score=31.68  Aligned_cols=46  Identities=15%  Similarity=0.042  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          13 GAHSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEK   58 (163)
Q Consensus        13 ~~~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~   58 (163)
                      .++..+|.|++-|++.+++....+...-..-..-+.+.-.+|+..+
T Consensus         6 ~i~~~~vG~~~G~~~~~~~~~~~~~~A~~~A~~i~~~A~~eAe~~~   51 (201)
T PF12072_consen    6 AIVALIVGIGIGYLVRKKINRKKLEQAEKEAEQILEEAEREAEAIK   51 (201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467778888888888777777777766666666666666555433

This domain is found in bacteria, archaea and eukaryotes. This domain is about 200 amino acids in length. This domain is found associated with PF00013 from PFAM, PF01966 from PFAM. This domain has a single completely conserved residue A that may be functionally important. ; GO: 0008663 2',3'-cyclic-nucleotide 2'-phosphodiesterase activity

>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=92.09  E-value=0.66  Score=27.40  Aligned_cols=40  Identities=13%  Similarity=0.024  Sum_probs=30.8

Q ss_pred             cccccCchHH---HHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q psy2889           5 YAIQSADTGA---HSHGIRRTIKCCFTKKFIWPPLIKALDDRK   44 (163)
Q Consensus         5 ~~~l~~~~~~---~~~~i~Flil~~~l~~~l~~pi~~~l~~R~   44 (163)
                      ||++.|=+-+   .|.++.+.+++++..++..|.+.+..-.|-
T Consensus         1 MPQLvPFyF~Nql~~~f~~l~il~yl~SkyiLP~~lrl~~sR~   43 (48)
T PF05933_consen    1 MPQLVPFYFVNQLSFGFLILSILLYLFSKYILPRILRLFVSRM   43 (48)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666664432   688888899999999999999988776663

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)

>PRK12705 hypothetical protein; Provisional

Probab=91.88  E-value=8.4  Score=33.90  Aligned_cols=31  Identities=19%  Similarity=0.164  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889         113 RVEIIKQINIARENLHNEIVNLAIKSAEKIL  143 (163)
Q Consensus       113 ~~~i~~e~~~a~~~l~~~i~~la~~~a~kll  143 (163)
                      +.+...+.....++...++..-|-..|..++
T Consensus       152 ~~~~~~e~~~~i~~~e~~~~~~a~~~A~~ii  182 (508)
T PRK12705        152 DAELEEEKAQRVKKIEEEADLEAERKAQNIL  182 (508)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333333344443333333333333333

>KOG1772|consensus

Probab=91.79  E-value=3.1  Score=28.72  Aligned_cols=53  Identities=13%  Similarity=0.171  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIA  123 (163)
Q Consensus        71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a  123 (163)
                      +|-.|..+|.+++++|++.-.....++..+|..|++....+-..+.......+
T Consensus        10 QLLqAEK~A~e~V~~ARk~K~~RLKQAKeEA~~Eie~yr~qrE~efk~ke~~~   62 (108)
T KOG1772|consen   10 QLLQAEKRAAEKVEEARKRKLRRLKQAKEEAEKEIEEYRSQREKEFKEKESAA   62 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666777777777777776666666666666666655555544444443333

>PRK09098 type III secretion system protein HrpB; Validated

Probab=91.49  E-value=5.8  Score=31.24  Aligned_cols=37  Identities=5%  Similarity=0.147  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSK   98 (163)
Q Consensus        62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~   98 (163)
                      .+..++.+..+.+|+.++++|+++|+.+.+..+++-.
T Consensus        46 a~Ar~~A~~Il~~A~~~A~~I~~~A~~e~e~~~~~Gy   82 (233)
T PRK09098         46 AAARARAERIVAEARAQAEAILEAARREADRSARRGY   82 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445556666777777777777777776665554443

>PF06936 Selenoprotein_S: Selenoprotein S (SelS); InterPro: IPR009703 This family consists of several mammalian selenoprotein S (SelS) sequences

Probab=91.31  E-value=4.4  Score=31.00  Aligned_cols=24  Identities=13%  Similarity=0.267  Sum_probs=3.3

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889          19 IRRTIKCCFTKKFIWPPLIKALDD   42 (163)
Q Consensus        19 i~Flil~~~l~~~l~~pi~~~l~~   42 (163)
                      .=|+|+.+++.+|+|+.+..-+..
T Consensus        37 GWyil~~~I~ly~l~qkl~~~~r~   60 (190)
T PF06936_consen   37 GWYILFGCILLYLLWQKLSPSFRS   60 (190)
T ss_dssp             -------------------HHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH
Confidence            335677778889999999888743

SelS is a plasma membrane protein and is present in a variety of tissues and cell types. These proteins are involved in the degradation process of misfolded endoplasmic reticulum (ER) luminal proteins which participate in the transfer of misfolded proteins from the ER to the cytosol, where they are destroyed by the proteasome in a ubiquitin-dependent manner []. They probably serve as a linker between DER1, which mediates the retro-translocation of misfolded proteins into the cytosol, and the ATPase complex VCP, which mediates the translocation and ubiquitination.; GO: 0008430 selenium binding, 0006886 intracellular protein transport, 0030176 integral to endoplasmic reticulum membrane; PDB: 2Q2F_A.

>TIGR01147 V_ATP_synt_G vacuolar ATP synthase, subunit G

Probab=89.45  E-value=5.6  Score=27.84  Aligned_cols=49  Identities=12%  Similarity=0.187  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQ  119 (163)
Q Consensus        71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e  119 (163)
                      .|-.|..+|.+|+..||..-...+.++..+|+.|++....+-..+....
T Consensus        10 ~LL~AE~eA~~IV~~AR~~r~~RLKqAK~EA~~EI~~yr~~kE~ef~~~   58 (113)
T TIGR01147        10 QLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEF   58 (113)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555777777777777766555555555555555555554444444443

This model describes the vacuolar ATP synthase G subunit in eukaryotes and includes members from diverse groups e.g., fungi, plants, parasites etc. V-ATPases are multi-subunit enzymes composed of two functional domains: A transmembrane Vo domain and a peripheral catalytic domain V1. The G subunit is one of the subunits of the catalytic domain. V-ATPases are responsible for the acidification of endosomes and lysosomes, which are part of the central vacuolar system.

>COG1970 MscL Large-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane]

Probab=89.42  E-value=1.1  Score=32.02  Aligned_cols=34  Identities=15%  Similarity=-0.048  Sum_probs=27.2

Q ss_pred             ccCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q psy2889           8 QSADTGA-HSHGIRRTIKCCFTKKFIWPPLIKALDD   42 (163)
Q Consensus         8 l~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l~~   42 (163)
                      ..++++. +..+|||+|+-|.+ .++.+|+.+..+.
T Consensus        66 ~~i~yG~Fi~~vinFlIiAf~i-Fl~Vk~inkl~~~  100 (130)
T COG1970          66 VVIAYGAFIQAVINFLIIAFAI-FLVVKAINKLRRK  100 (130)
T ss_pred             eeeeHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence            3466765 78899999999999 7788999887765

>PRK06397 V-type ATP synthase subunit H; Validated

Probab=88.75  E-value=5.8  Score=27.05  Aligned_cols=71  Identities=20%  Similarity=0.292  Sum_probs=32.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          38 KALDDRKKKIADILAAANSEKE-KVSYDRKRIQKELIATHEENK----NRINLTEKQCKLIIEKSKKKATEEANII  108 (163)
Q Consensus        38 ~~l~~R~~~I~~~l~~A~~~~~-ea~~~~~e~e~~L~~a~~ea~----~ii~~A~~~a~~~~~~~~~~A~~e~~~~  108 (163)
                      +++.+....+...+..-...++ .......+|+..+.....+..    .-+.++|++++.-..+++..|++++..+
T Consensus        13 kiIKeKE~S~dkEI~~~k~eqe~~iKEa~~k~ee~~~kteeE~~~~Y~~~l~e~RkeaE~ka~eiI~~Akq~As~i   88 (111)
T PRK06397         13 KIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAKQEASLI   88 (111)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555544443222 234444455555544443332    2344444444444444444444444443

>PRK09731 putative general secretion pathway protein YghD; Provisional

Probab=88.75  E-value=4.9  Score=30.43  Aligned_cols=33  Identities=15%  Similarity=0.146  Sum_probs=25.2

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALD   41 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~   41 (163)
                      +|-=.-+..++.++++++++|..+|.|+....+
T Consensus        33 s~REq~ll~~~g~vL~l~i~Y~~iWqPl~~~~~   65 (178)
T PRK09731         33 SPREKGMLLAAVVFLFSVGYYVLIWQPLSERIE   65 (178)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence            333344667788899999999999999988543

>COG1862 YajC Preprotein translocase subunit YajC [Intracellular trafficking and secretion]

Probab=88.71  E-value=1.1  Score=30.50  Aligned_cols=35  Identities=9%  Similarity=0.040  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q psy2889          15 HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIAD   49 (163)
Q Consensus        15 ~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~   49 (163)
                      +..++-|++++.++|++++.|=.+=+.+|++.+.+
T Consensus         9 ~~~ll~~vl~~~ifyFli~RPQrKr~K~~~~ml~s   43 (97)
T COG1862           9 LVLLLPLVLIFAIFYFLIIRPQRKRMKEHQELLNS   43 (97)
T ss_pred             HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHh
Confidence            56667777777777778999999988888887643

>PF06103 DUF948: Bacterial protein of unknown function (DUF948); InterPro: IPR009293 This family consists of bacterial sequences several of which are thought to be general stress proteins

Probab=87.27  E-value=6.4  Score=25.89  Aligned_cols=22  Identities=23%  Similarity=0.226  Sum_probs=18.8

Q ss_pred             HHHHHHHHHHHHHHhHHHHHHH
Q psy2889          18 GIRRTIKCCFTKKFIWPPLIKA   39 (163)
Q Consensus        18 ~i~Flil~~~l~~~l~~pi~~~   39 (163)
                      ++.+.+-+.+|..|+.+|+.+.
T Consensus         3 ~lI~Aiaf~vLvi~l~~~l~~l   24 (90)
T PF06103_consen    3 GLIAAIAFAVLVIFLIKVLKKL   24 (90)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5667788889999999999988

>PRK11637 AmiB activator; Provisional

Probab=86.67  E-value=19  Score=30.68  Aligned_cols=48  Identities=17%  Similarity=0.130  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          35 PLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNR   82 (163)
Q Consensus        35 pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~i   82 (163)
                      +...-..++.+.+...+...++...+.+..+.+.+..+.....+....
T Consensus        40 ~~~~~~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~   87 (428)
T PRK11637         40 AHASDNRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQA   87 (428)
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333456666666666666666666655566655555555555544433

>PRK13955 mscL large-conductance mechanosensitive channel; Provisional

Probab=84.48  E-value=2.5  Score=30.37  Aligned_cols=28  Identities=11%  Similarity=-0.166  Sum_probs=22.2

Q ss_pred             chHH-HHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889          11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKA   39 (163)
Q Consensus        11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~   39 (163)
                      .++. +..+|||+|+-+++ +++.+|+.++
T Consensus        65 ~yG~fl~avInFlIiA~vv-F~ivk~~nk~   93 (130)
T PRK13955         65 MYGNFIQTIFDFLIIAASI-FMFVKVFNKL   93 (130)
T ss_pred             eHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence            4454 78899999999999 5667888875

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=83.22  E-value=22  Score=28.50  Aligned_cols=44  Identities=16%  Similarity=0.148  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATE  103 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~  103 (163)
                      .......+....+.+++.++..++.+|+.+++.+..+...++..
T Consensus        71 ~~~~~~~~a~~~l~~~~~ea~~~l~~a~~q~e~~~~ea~~e~e~  114 (281)
T PRK06669         71 IVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELER  114 (281)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778888999999999999999998888887776544443

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=82.92  E-value=49  Score=32.27  Aligned_cols=47  Identities=13%  Similarity=0.167  Sum_probs=28.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHH
Q psy2889         105 ANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEV  151 (163)
Q Consensus       105 ~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~  151 (163)
                      ...-.......|..+.+....+...++..+-...-.++=++-+|+..
T Consensus       726 ~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~~~  772 (1201)
T PF12128_consen  726 LEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDPER  772 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence            34444445555666666666666666666666666677666666643

>KOG2302|consensus

Probab=82.77  E-value=11  Score=36.18  Aligned_cols=65  Identities=12%  Similarity=0.021  Sum_probs=37.0

Q ss_pred             cccccCchHHHHHHHHHHHH--HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           5 YAIQSADTGAHSHGIRRTIK--CCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIAT   75 (163)
Q Consensus         5 ~~~l~~~~~~~~~~i~Flil--~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a   75 (163)
                      .|.++-|++++.-+|+|+++  +|+|+-|+---+.++.+-|+.      .++++++..-++.+...++++.+|
T Consensus      1352 qPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqh------qe~EeArRreEKrLrrlekkrR~A 1418 (1956)
T KOG2302|consen 1352 QPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQH------QEAEEARRREEKRLRRLEKKRRAA 1418 (1956)
T ss_pred             eccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            36666666654444544433  345556655556666666654      344444455566666666666655

>PRK13953 mscL large-conductance mechanosensitive channel; Provisional

Probab=82.20  E-value=3.2  Score=29.58  Aligned_cols=29  Identities=14%  Similarity=-0.043  Sum_probs=22.4

Q ss_pred             chHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889          11 DTGA-HSHGIRRTIKCCFTKKFIWPPLIKAL   40 (163)
Q Consensus        11 ~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l   40 (163)
                      .++. +-.++||+|+-+++ +++.+|+.++-
T Consensus        65 ~yG~fl~avinFlIia~vv-F~~vk~~nk~~   94 (125)
T PRK13953         65 QYGAFIQSIVDFLIIAFAI-FIFVKVLTSFI   94 (125)
T ss_pred             eHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Confidence            3443 78899999999988 66788888763

>PRK12704 phosphodiesterase; Provisional

Probab=82.16  E-value=35  Score=30.12  Aligned_cols=35  Identities=20%  Similarity=0.170  Sum_probs=14.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889         110 YNARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus       110 ~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      ++.+.+...+.....++...++..-|-..|.++|.
T Consensus       161 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~  195 (520)
T PRK12704        161 EKVEEEARHEAAVLIKEIEEEAKEEADKKAKEILA  195 (520)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333344444444444444444444444444433

>COG4741 Predicted secreted endonuclease distantly related to archaeal Holliday junction resolvase [Nucleotide transport and metabolism]

Probab=82.07  E-value=18  Score=26.76  Aligned_cols=22  Identities=14%  Similarity=0.308  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q psy2889          33 WPPLIKALDDRKKKIADILAAA   54 (163)
Q Consensus        33 ~~pi~~~l~~R~~~I~~~l~~A   54 (163)
                      ...+.+-++.++..+...+..+
T Consensus        24 Ir~lq~~~e~k~~~l~e~l~~~   45 (175)
T COG4741          24 IRSLQGKVESKARELEETLQKA   45 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            3446666666666666666655

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=81.42  E-value=21  Score=27.14  Aligned_cols=52  Identities=13%  Similarity=0.178  Sum_probs=38.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HH-HHHHHHHHHHhh
Q psy2889         111 NARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IE-VNSSLLNQLKIE  162 (163)
Q Consensus       111 ~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~-~~~~li~~~i~~  162 (163)
                      ..-..+..........++.++.+|++.+++|+++..++  +. .-..++.+.+..
T Consensus        69 ~~~~~l~~~~~~~~~~~~~~lv~La~~iarkvi~~~l~~~p~a~v~~~v~eal~~  123 (199)
T PRK06032         69 QAAAGLLAALAAVEHEMETEAADLALAVARKIAGAALAAEPLAEITAAVRDCLRH  123 (199)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            34445666667777788999999999999999999885  43 245666666543

>KOG1962|consensus

Probab=81.00  E-value=24  Score=27.51  Aligned_cols=65  Identities=8%  Similarity=-0.006  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          19 IRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLT   86 (163)
Q Consensus        19 i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A   86 (163)
                      ..|.++++++..-++.-+.....-|..  .....+.+..+..++..-. ++++......+.....++.
T Consensus       103 sGf~LFL~lvI~R~~~ll~~l~~l~~~--~~~~~~~~~lk~~~~~~~~-~~~~~~~~~~~~~kL~~el  167 (216)
T KOG1962|consen  103 SGFVLFLSLVIRRLHTLLRELATLRAN--EKAMKENEALKKQLENSSK-LEEENDKLKADLEKLETEL  167 (216)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHhhhcccc-hhhhHHHHHhhHHHHHHHH
Confidence            348888887777778778887777776  2333333333333333222 3444444444444444433

>TIGR03319 YmdA_YtgF conserved hypothetical protein YmdA/YtgF

Probab=80.65  E-value=40  Score=29.75  Aligned_cols=33  Identities=21%  Similarity=0.147  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy2889         112 ARVEIIKQINIARENLHNEIVNLAIKSAEKILN  144 (163)
Q Consensus       112 a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~  144 (163)
                      .+.+...+.....++...++..-|-..|.++|.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~i~~  189 (514)
T TIGR03319       157 VEEEARHEAAKLIKEIEEEAKEEADKKAKEILA  189 (514)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333333344444444444444444444444433

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1b9u_A	34	Protein (ATP synthase); membrane protein, hydrolas	99.09
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	98.83
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	98.4
2khk_A	53	ATP synthase subunit B; F1FO ATP synthase, spectro	98.32
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	98.14
2cly_A	214	ATP synthase B chain, mitochondrial; mitochondrion	98.1
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	97.18
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	97.09
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	97.07
1l2p_A	61	ATP synthase B chain; alpha helix, hydrolase; 1.55	96.89
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	96.07
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	96.02
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	95.54
3v6i_B	105	V-type ATP synthase, subunit (VAPC-therm); periphe	93.93
2kk7_A	52	V-type ATP synthase subunit E; A1AO ATP synthase,	93.88
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	93.35
2oar_A	174	Large-conductance mechanosensitive channel; stretc	90.69
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	89.34
4efa_G	119	V-type proton ATPase subunit G; heterotrimer, peri	88.62
2o6n_A	35	RH4B designed peptide; right-handed, tetramer, de	88.11
2k6i_A	56	Uncharacterized protein MJ0223; H subunit, A1AO AT	87.86

>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1

Probab=99.09  E-value=1e-10  Score=64.13  Aligned_cols=33  Identities=24%  Similarity=0.595  Sum_probs=30.5

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q psy2889           9 SADTGAHSHGIRRTIKCCFTKKFIWPPLIKALD   41 (163)
Q Consensus         9 ~~~~~~~~~~i~Flil~~~l~~~l~~pi~~~l~   41 (163)
                      ++|++++|+++||++++++++||+|||+.++++
T Consensus         2 ~~~~~l~~~~i~Flil~~~l~kf~~~Pi~~~l~   34 (34)
T 1b9u_A            2 NLNATILGQAIAFVLFVLFCMKYVWPPLMAAIE   34 (34)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHC
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            467889999999999999999999999999874

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=98.83  E-value=4.5e-08  Score=60.34  Aligned_cols=59  Identities=27%  Similarity=0.334  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH  128 (163)
Q Consensus        70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~  128 (163)
                      ..|.+|+.++..|+.+|+.++..++++++.+|+.++++++..|+.+|+.++..++.+|+
T Consensus         2 ~~L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~Lr   60 (61)
T 1l2p_A            2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            47899999999999999999999999999999999999999999999999999999986

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=98.40  E-value=2e-07  Score=69.52  Aligned_cols=99  Identities=11%  Similarity=0.124  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          63 YDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus        63 ~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      +...+.+..+.+|+.++++|+.+|+.+++...+.+..+++.+++.....+...+..+.......++.++.+.++..+.++
T Consensus        14 ~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~~~l~~~~ev~~~~~~~a~~~   93 (198)
T 2dm9_A           14 EAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRRKRLAIQEEIISSVLEEVKRR   93 (198)
T ss_dssp             -------------------------------------------------------------------CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666777777777777777777777777777777777777777777777777777777889999999999999999


Q ss_pred             HhhhcCHHHHHHHHHHHHhh
Q psy2889         143 LNNKITIEVNSSLLNQLKIE  162 (163)
Q Consensus       143 l~~~i~~~~~~~li~~~i~~  162 (163)
                      |++ ++++.+..++..++.+
T Consensus        94 l~~-l~~~~y~~~l~~li~e  112 (198)
T 2dm9_A           94 LET-MSEDEYFESVKALLKE  112 (198)
T ss_dssp             HHH-CCHHHHHHHHHHHHHH
T ss_pred             HHh-cCHHHHHHHHHHHHHH
Confidence            999 8877788888877754

>2khk_A ATP synthase subunit B; F1FO ATP synthase, spectroscopy, ATP synthesis, inner membrane, cell membrane, CF(0), hydrogen ION transpor transport; NMR {Escherichia coli}

Probab=98.32  E-value=1.3e-08  Score=61.04  Aligned_cols=50  Identities=24%  Similarity=0.343  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          38 KALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTE   87 (163)
Q Consensus        38 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~   87 (163)
                      ++|++|++.|.++|+.|+..+.+++.++.+|+..|.+|+.++..|+.+|+
T Consensus         2 ~~l~~R~~~I~~~l~~A~~~~~ea~~~~~~~e~~l~~Ar~ea~~ii~~A~   51 (53)
T 2khk_A            2 AAIEKRQKEIADGLASAERAHKDLDLAKASATDQLKKAKAEAQVIIEQAN   51 (53)
T ss_dssp             CCSSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCCS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            46889999999999999999999999999999999999999998887654

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=98.14  E-value=0.00016  Score=53.74  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          62 SYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEK  141 (163)
Q Consensus        62 ~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~k  141 (163)
                      ++..++.+..+.+|+.++..|+++|+.+|+.+.+.+..++..++....+........+.....-..+.++.+-...-+.+
T Consensus         9 ~eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r~~s~a~le~r~~~L~ar~eli~~v~~~a~~   88 (187)
T 3v6i_A            9 QEVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRRAESAGELLVATARTQARGEVLEEVRRRVRE   88 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556778889999999999999999999999999999999999888777777777777777777777777777777777


Q ss_pred             HHhhhcCHHHHHHHHHHHH
Q psy2889         142 ILNNKITIEVNSSLLNQLK  160 (163)
Q Consensus       142 ll~~~i~~~~~~~li~~~i  160 (163)
                      -|..-.++.....++...|
T Consensus        89 ~L~~~~~~~~Y~~~L~~Li  107 (187)
T 3v6i_A           89 ALEALPQKPEWPEVVRKLA  107 (187)
T ss_dssp             HHHHGGGSTTHHHHHHHHH
T ss_pred             HHHhhhCCccHHHHHHHHH
Confidence            7776543323444544444

>2cly_A ATP synthase B chain, mitochondrial; mitochondrion, ION transport, CF(0), stator, transport, acetylation, hydrogen ION transport; 2.8A {Bos taurus} SCOP: f.52.1.1 PDB: 2wss_T*

Probab=98.10  E-value=0.00019  Score=54.64  Aligned_cols=152  Identities=11%  Similarity=0.008  Sum_probs=50.5

Q ss_pred             cccccccCchHH----HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889           3 LIYAIQSADTGA----HSHGIRRTIKCCFTKKFIWPPLIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEE   78 (163)
Q Consensus         3 ~~~~~l~~~~~~----~~~~i~Flil~~~l~~~l~~pi~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~e   78 (163)
                      +...+++-.+.+    ++.+++|+++++++.|++.||+.+++|++-++|.+.+++++...-++-+..-+..+.+.. ..+
T Consensus        41 L~~yliSKEiyVvneEt~~~~~~~~~~~~~~K~~Gp~~a~~~D~~~~~i~~~ln~~r~~~i~~lk~~Ie~~k~~q~-~~~  119 (214)
T 2cly_A           41 LILYLLSKEIYVITPETFSAISTIGFLVYIVKKYGASVGEFADKLNEQKIAQLEEVKQASIKQIQDAIDMEKSQQA-LVQ  119 (214)
T ss_dssp             --------------------------------------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTG
T ss_pred             HHHHHHcCceEEEechHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence            333445545444    578899999999999999999999999999999999999987555544333333333332 233


Q ss_pred             HHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCHHHHH
Q psy2889          79 NKNRIN-----LTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVNLAIKSAEKILNNKITIEVNS  153 (163)
Q Consensus        79 a~~ii~-----~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~~~~~~  153 (163)
                      ....+-     .+.-+++..+.+-+-....|+.+.++...+-=...++...+       .++-.+..++. +++++...+
T Consensus       120 ~~~~Lf~~~kEn~al~lEa~yre~~~~v~~EvK~rLDy~v~~e~~~r~~eQ~-------~mv~wV~~~V~-k~it~~~ek  191 (214)
T 2cly_A          120 KRHYLFDVQRNNIAMALEVTYRERLHRVYREVKNRLDYHISVQNMMRQKEQE-------HMINWVEKRVV-QSISAQQEK  191 (214)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHT-C--------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH-HhcCcHHHH
Confidence            333332     22333333333444444445555544443333333332222       34444445544 344766666


Q ss_pred             HHHHHHHhhC
Q psy2889         154 SLLNQLKIEL  163 (163)
Q Consensus       154 ~li~~~i~~l  163 (163)
                      ..+++-|.+|
T Consensus       192 ~~L~~cIadl  201 (214)
T 2cly_A          192 ETIAKCIADL  201 (214)
T ss_dssp             ----------
T ss_pred             HHHHHHHHHH
Confidence            7777777654

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=97.18  E-value=0.022  Score=37.88  Aligned_cols=97  Identities=16%  Similarity=0.251  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          36 LIKALDDRKKKIADILAAANSEKEKVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVE  115 (163)
Q Consensus        36 i~~~l~~R~~~I~~~l~~A~~~~~ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~  115 (163)
                      +.+-|.+|.......++          ....+.+..+..|+.++..|+.+|...+...-.+-......+..++...++..
T Consensus         7 llk~LAerE~~L~~~lE----------~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~ae~r~~~~~Et~ri~~eara~   76 (105)
T 3v6i_B            7 LIKSLAEKEKQLLERLE----------AAKKEAEERVKRAEAEAKALLEEAEAKAKALEAQYRERERAETEALLARYRER   76 (105)
T ss_dssp             HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44556666666555444          44556667788888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889         116 IIKQINIARENLHNEIVNLAIKSAEKI  142 (163)
Q Consensus       116 i~~e~~~a~~~l~~~i~~la~~~a~kl  142 (163)
                      .+.+-.....--...+..-+-.+...+
T Consensus        77 Aeaea~~v~~~A~~r~~~Av~~vLkeV  103 (105)
T 3v6i_B           77 AEAEAKAVREKAMARLDEAVALVLKEV  103 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence            877777776666555554444444333

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=97.09  E-value=0.015  Score=42.88  Aligned_cols=49  Identities=8%  Similarity=0.037  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          74 ATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINI  122 (163)
Q Consensus        74 ~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~  122 (163)
                      +|+.+++.|+.+|+.+++.+.+++.++|....+.....+..+....+++
T Consensus        10 eA~~~a~~I~~eA~~~a~~I~~eA~~eA~~~~~~~~~~~e~e~~~~~~r   58 (187)
T 3v6i_A           10 EVEAEIQALLQEAEAKAEAVKREAEEKAKALLQARERALEAQYRAALRR   58 (187)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555555555555555555544444444444444444444444333

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=97.07  E-value=0.061  Score=40.96  Aligned_cols=91  Identities=8%  Similarity=0.043  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHH
Q psy2889          70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARE-----------NLHNEIVNLAIKS  138 (163)
Q Consensus        70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~-----------~l~~~i~~la~~~  138 (163)
                      ..+.+|+.+|.+|...|..+++.++.++..+++..+....+....+++..+.....           ..+.++.+-..+-
T Consensus        23 fI~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i~~S~~~~~aR~~vL~ar~e~i~~v~~~  102 (233)
T 4efa_E           23 FIRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQITKSTIANKMRLKVLSAREQSLDGIFEE  102 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35677888888888888888888888888777777777777666666655544333           3344555555555


Q ss_pred             HHHHHhhhc-CHHHHHHHHHHHH
Q psy2889         139 AEKILNNKI-TIEVNSSLLNQLK  160 (163)
Q Consensus       139 a~kll~~~i-~~~~~~~li~~~i  160 (163)
                      |.+-|..-. |++.-..++..++
T Consensus       103 a~~~L~~~~~d~~~Y~~lL~~Li  125 (233)
T 4efa_E          103 TKEKLSGIANNRDEYKPILQSLI  125 (233)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHHHHHH
Confidence            555555432 4555555555554

>1l2p_A ATP synthase B chain; alpha helix, hydrolase; 1.55A {Escherichia coli} SCOP: f.23.21.1

Probab=96.89  E-value=0.023  Score=34.21  Aligned_cols=56  Identities=13%  Similarity=0.079  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          61 VSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEI  116 (163)
Q Consensus        61 a~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i  116 (163)
                      ......+....+..|+.++..++.++..+|....+.++..|+.+++.....+...+
T Consensus         4 L~~Ar~ea~~Ii~~A~~~a~~~~~e~~~~A~~ea~~i~~~A~~eie~ek~~A~~~L   59 (61)
T 1l2p_A            4 LKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            44556677777778888888888888888888888888888888887777776655

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=96.07  E-value=0.0011  Score=48.80  Aligned_cols=64  Identities=16%  Similarity=0.130  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIVN  133 (163)
Q Consensus        70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~~  133 (163)
                      ..+.+|+.++..|+.+|+.+++.+.+++..+++.+.++++++++.+++.++..+..++..+...
T Consensus        10 ~il~~A~~~a~~il~eA~~~a~~i~~~a~~e~~~~~~~~~~~a~~e~~~~~~~~~s~~~~~~r~   73 (198)
T 2dm9_A           10 EINKEAERKIEYILNEARQQAEKIKEEARRNAEAKAEWIIRRAKTQAELEKQRIIANARLEVRR   73 (198)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666666666666666666666666666666666666665555444443

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=96.02  E-value=0.18  Score=34.66  Aligned_cols=38  Identities=8%  Similarity=0.003  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--HHHHH
Q psy2889         116 IIKQINIARENLHNEIVNLAIKSAEKILNNKIT--IEVNS  153 (163)
Q Consensus       116 i~~e~~~a~~~l~~~i~~la~~~a~kll~~~i~--~~~~~  153 (163)
                      ++.+...-..+++.....---.++..||+.-.|  |+.|.
T Consensus        77 ~e~eT~~ki~~i~~~~~~~k~~Vv~~Ll~~V~dvkpeiH~  116 (119)
T 4efa_G           77 AEAGVQGELAEIKKIAEKKKDDVVKILIETVIKPSAEVHI  116 (119)
T ss_dssp             TTSSSHHHHHHHHHHHHHTHHHHHHHHHHHHSCC------
T ss_pred             HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHcCCCCCCCC
Confidence            333444445566666666566666666665433  55543

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=95.54  E-value=0.052  Score=31.81  Aligned_cols=32  Identities=28%  Similarity=0.270  Sum_probs=17.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          71 ELIATHEENKNRINLTEKQCKLIIEKSKKKAT  102 (163)
Q Consensus        71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~  102 (163)
                      .+.+|+.++..|+.+|+.+++.+..+...+|.
T Consensus        15 I~~eA~~eA~~Il~eA~~eA~~Ii~eA~~~Ae   46 (52)
T 2kk7_A           15 ILDDAKAEANKIISEAEAEKAKILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555555555555555555555544443

>3v6i_B V-type ATP synthase, subunit (VAPC-therm); peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_G 3j0j_I

Probab=93.93  E-value=0.85  Score=30.21  Aligned_cols=69  Identities=16%  Similarity=0.200  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLHNEIV  132 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~~~i~  132 (163)
                      .......+...+|..|+.++...+..|..++..+..++...++...    .+-+..+..+..+.+.+.+....
T Consensus        10 ~LAerE~~L~~~lE~Ar~eA~~~v~~AEAeA~ril~eAe~~a~~l~----ae~r~~~~~Et~ri~~eara~Ae   78 (105)
T 3v6i_B           10 SLAEKEKQLLERLEAAKKEAEERVKRAEAEAKALLEEAEAKAKALE----AQYRERERAETEALLARYRERAE   78 (105)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344455667788899999999999888888877766655555544    44444444444444444444433

>2kk7_A V-type ATP synthase subunit E; A1AO ATP synthase, ATP synthesis, hydrogen ION transport, ION transport, transport, hydrolase; NMR {Methanocaldococcus jannaschii}

Probab=93.88  E-value=0.39  Score=27.99  Aligned_cols=26  Identities=27%  Similarity=0.121  Sum_probs=12.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          92 LIIEKSKKKATEEANIILYNARVEII  117 (163)
Q Consensus        92 ~~~~~~~~~A~~e~~~~~~~a~~~i~  117 (163)
                      ...+.++.+|+.+++.++..|+.+.+
T Consensus        21 ~eA~~Il~eA~~eA~~Ii~eA~~~Ae   46 (52)
T 2kk7_A           21 AEANKIISEAEAEKAKILEKAKEEAE   46 (52)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33333444444555555555554443

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=93.35  E-value=0.11  Score=30.77  Aligned_cols=31  Identities=13%  Similarity=0.188  Sum_probs=18.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          72 LIATHEENKNRINLTEKQCKLIIEKSKKKAT  102 (163)
Q Consensus        72 L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~  102 (163)
                      +.+|..+|..++++|..++..++.+++.+|+
T Consensus        21 IKeAE~~A~~iVeeA~~ea~~ii~eAreeAk   51 (56)
T 2k6i_A           21 VKLAEEQAVKEIEEAKNRAEQIKAEAIEEAK   51 (56)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666666666666666665555555444

>2oar_A Large-conductance mechanosensitive channel; stretch activated ION channel mechanosensitive, membrane protein; 3.50A {Mycobacterium tuberculosis H37RA} SCOP: f.16.1.1

Probab=90.69  E-value=0.31  Score=35.57  Aligned_cols=32  Identities=13%  Similarity=-0.019  Sum_probs=27.3

Q ss_pred             cCchHH-HHHHHHHHHHHHHHHHHhHHHHHHHH
Q psy2889           9 SADTGA-HSHGIRRTIKCCFTKKFIWPPLIKAL   40 (163)
Q Consensus         9 ~~~~~~-~~~~i~Flil~~~l~~~l~~pi~~~l   40 (163)
                      .++++. +-.+|||+|+.+++|.++.+|+.++-
T Consensus        89 ~i~yG~Fi~avInFlIIA~vIYFliVk~iNklk  121 (174)
T 2oar_A           89 TIDLNVLLSAAINFFLIAFAVYFLVVLPYNTLR  121 (174)
T ss_dssp             EECHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred             eeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356665 78899999999999999999998873

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=89.34  E-value=5.5  Score=29.88  Aligned_cols=18  Identities=17%  Similarity=-0.012  Sum_probs=6.6

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q psy2889          86 TEKQCKLIIEKSKKKATE  103 (163)
Q Consensus        86 A~~~a~~~~~~~~~~A~~  103 (163)
                      ++......+++...++..
T Consensus        54 ~~~~i~~~~ek~~kq~e~   71 (233)
T 4efa_E           54 ETNNIDGNFKSKLKKAML   71 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333333333333333333

>4efa_G V-type proton ATPase subunit G; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_K 2k88_A 2kwy_A

Probab=88.62  E-value=4.3  Score=27.67  Aligned_cols=46  Identities=15%  Similarity=0.203  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          71 ELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEI  116 (163)
Q Consensus        71 ~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i  116 (163)
                      .|-.|..+|.+|+.+|+..-.....++..+|..|++....+-..+.
T Consensus        14 qLL~AEk~A~~iV~~ARk~k~~rLKqAK~EA~~EIe~yR~qkE~eF   59 (119)
T 4efa_G           14 TLLQAEKEAHEIVSKARKYRQDKLKQAKTDAAKEIDSYKIQKDKEL   59 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777777777777776666555555555555555444443333

>2o6n_A RH4B designed peptide; right-handed, tetramer, de novo protein; HET: CGU; 1.10A {Synthetic} SCOP: k.17.1.1 PDB: 1tgg_A*

Probab=88.11  E-value=1.6  Score=22.29  Aligned_cols=29  Identities=24%  Similarity=0.486  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          99 KKATEEANIILYNARVEIIKQINIARENL  127 (163)
Q Consensus        99 ~~A~~e~~~~~~~a~~~i~~e~~~a~~~l  127 (163)
                      ++|++++.-++..|+++|-.+..++++++
T Consensus         5 eqakkeiaylikkakeeileeikkakqei   33 (35)
T 2o6n_A            5 EQAKKEIAYLIKKAKEEILEEIKKAKQEI   33 (35)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45666777777777777777777666553

>2k6i_A Uncharacterized protein MJ0223; H subunit, A1AO ATP synthase, V1VO ATPase, F1FO ATP synthase, structural protein; NMR {Methanocaldococcus jannaschii}

Probab=87.86  E-value=1.2  Score=26.36  Aligned_cols=29  Identities=10%  Similarity=0.110  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          65 RKRIQKELIATHEENKNRINLTEKQCKLI   93 (163)
Q Consensus        65 ~~e~e~~L~~a~~ea~~ii~~A~~~a~~~   93 (163)
                      ..+....+.+|..++.+|+.+|+.+|..+
T Consensus        25 E~~A~~iVeeA~~ea~~ii~eAreeAkeI   53 (56)
T 2k6i_A           25 EEQAVKEIEEAKNRAEQIKAEAIEEAKKL   53 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455566677777777777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	98.99
d1l2pa_	61	F1F0 ATP synthase subunit B, membrane domain {Esch	97.64
d2oara1	109	Gated mechanosensitive channel {Mycobacterium tube	84.01

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=98.99  E-value=2.8e-09  Score=64.21  Aligned_cols=59  Identities=27%  Similarity=0.334  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          70 KELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEIIKQINIARENLH  128 (163)
Q Consensus        70 ~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~l~  128 (163)
                      ..|.+|+.++.+|+++|++++..+++++...|+.|+++++..|+.+|+.++..++.+||
T Consensus         2 e~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eLR   60 (61)
T d1l2pa_           2 DQLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREELR   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            46899999999999999999999999999999999999999999999999999999987

>d1l2pa_ f.23.21.1 (A:) F1F0 ATP synthase subunit B, membrane domain {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Single transmembrane helix
superfamily: F1F0 ATP synthase subunit B, membrane domain
family: F1F0 ATP synthase subunit B, membrane domain
domain: F1F0 ATP synthase subunit B, membrane domain
species: Escherichia coli [TaxId: 562]

Probab=97.64  E-value=0.00055  Score=40.37  Aligned_cols=57  Identities=12%  Similarity=0.087  Sum_probs=51.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy2889          60 KVSYDRKRIQKELIATHEENKNRINLTEKQCKLIIEKSKKKATEEANIILYNARVEI  116 (163)
Q Consensus        60 ea~~~~~e~e~~L~~a~~ea~~ii~~A~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i  116 (163)
                      +......+....+.+|+..+.+|+++|+.+|....+.++..|+.+++.-...++..+
T Consensus         3 ~L~eAK~eAa~Ii~qA~~ra~qIveeak~~A~~Ea~rI~~~A~~eIe~E~~~A~~eL   59 (61)
T d1l2pa_           3 QLKKAKAEAQVIIEQANKRRSQILDEAKAEAEQERTKIVAQAQAEIEAERKRAREEL   59 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            455667777888999999999999999999999999999999999999999988775

>d2oara1 f.16.1.1 (A:10-118) Gated mechanosensitive channel {Mycobacterium tuberculosis [TaxId: 1773]}

class: Membrane and cell surface proteins and peptides
fold: Gated mechanosensitive channel
superfamily: Gated mechanosensitive channel
family: Gated mechanosensitive channel
domain: Gated mechanosensitive channel
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.01  E-value=0.74  Score=29.39  Aligned_cols=30  Identities=13%  Similarity=-0.027  Sum_probs=24.5

Q ss_pred             CchH-HHHHHHHHHHHHHHHHHHhHHHHHHH
Q psy2889          10 ADTG-AHSHGIRRTIKCCFTKKFIWPPLIKA   39 (163)
Q Consensus        10 ~~~~-~~~~~i~Flil~~~l~~~l~~pi~~~   39 (163)
                      ++++ |+-.+|||+|+.++++..+.+|+.+.
T Consensus        58 i~~G~fi~a~InFlIiA~vv~F~vvk~~n~~   88 (109)
T d2oara1          58 IDLNVLLSAAINFFLIAFAVYFLVVLPYNTL   88 (109)
T ss_dssp             ECHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred             eeHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555 47889999999999988888888765