Psyllid ID: psy291

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MSKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHccccccEEEEEEccccEEEEccccccccccEEEEcccccccccccccccHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHcHHHHHHHHHHHHHcccHHHHHHHHHHcccccccEEEEEEccccEEEEcccccccccEEEEEccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccHHHHccc
Coil and Loop (DISEMBL)
msklknflgINVLENLRKIYKengglkncwktlyltddlkfgkyvgidqfgnkyyenpryffgrnrwviynpdvglnydgsmvpaewygwlhyktdytpcedpgrpvyKWMAEHTqnmsgsnkeyvpysttrdkiqawtppsssgrnkf
Flexible Loop (DISEMBL)
msklknflginVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTrdkiqawtppsssgrnkf
Low Complexity Region (SEG)
MSKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Disordered region (IsUnstruct)
*****NFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMA*************************************
Disordered Region (DISOPRED)
*********INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQA************
Disordered Region (DISEMBL)
MSKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ*************
Disordered Region (DISPRO)
*SKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSS******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQAWTPPSSSGRNKF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q9N2W7	146	Probable NADH dehydrogena	yes	N/A	0.912	0.931	0.485	4e-30
Q0MQ86	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.899	0.924	0.431	5e-26
O97725	145	NADH dehydrogenase [ubiqu	yes	N/A	0.899	0.924	0.431	5e-26
Q0MQ87	145	NADH dehydrogenase [ubiqu	yes	N/A	0.899	0.924	0.424	2e-25
Q9UI09	145	NADH dehydrogenase [ubiqu	yes	N/A	0.899	0.924	0.424	2e-25
Q0MQ85	145	NADH dehydrogenase [ubiqu	N/A	N/A	0.899	0.924	0.424	2e-25
Q7TMF3	145	NADH dehydrogenase [ubiqu	yes	N/A	0.899	0.924	0.410	4e-25
Q54MV7	138	NADH dehydrogenase [ubiqu	yes	N/A	0.664	0.717	0.432	2e-15
Q9M9M9	159	Probable NADH dehydrogena	yes	N/A	0.657	0.616	0.363	9e-12

>sp|Q9N2W7|NDUAC_CAEEL Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Caenorhabditis elegans GN=Y94H6A.8 PE=3 SV=2

 Score =  130 bits (326), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 86/138 (62%), Gaps = 2/138 (1%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           LK +LGI+ ++   ++ KE GG+K   K  YL D  + G  VG D FGN+YYEN  YF  
Sbjct: 3   LKAWLGIDKIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVP 62

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG-SN 122
           RNRWV +   V L+YD + VP EW+ WLH+ TD  P   P  P   W+ EH +N S  ++
Sbjct: 63  RNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYAD 121

Query: 123 KEYVPYSTTRDKIQAWTP 140
           K+YVPYSTTR KIQ W P
Sbjct: 122 KKYVPYSTTRTKIQGWQP 139

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.
Caenorhabditis elegans (taxid: 6239)

>sp|Q0MQ86|NDUAC_GORGO NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Gorilla gorilla gorilla GN=NDUFA12 PE=2 SV=1

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   +  + T+D K G  VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4   VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P   P          H  NM+G+ ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNMTGTPEQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Gorilla gorilla gorilla (taxid: 9595)

>sp|O97725|NDUAC_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Bos taurus GN=NDUFA12 PE=1 SV=1

 Score =  116 bits (290), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   + L+  +D++ G  VG D++GNKYYE+ + FFGR+RWVI
Sbjct: 4   LQVLKRGLQQVSGHGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVI 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P   P          H  N+SG+ ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIWTNHKFNLSGTPQQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWVPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Bos taurus (taxid: 9913)

>sp|Q0MQ87|NDUAC_PANTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pan troglodytes GN=NDUFA12 PE=2 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   +  + T+D K G  VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4   VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P   P          H  N++G+ ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pan troglodytes (taxid: 9598)

>sp|Q9UI09|NDUAC_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Homo sapiens GN=NDUFA12 PE=1 SV=1

 Score =  114 bits (286), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   +  + T+D K G  VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4   VQVLKRGLQQITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P   P          H  N++G+ ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Homo sapiens (taxid: 9606)

>sp|Q0MQ85|NDUAC_PONPY NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Pongo pygmaeus GN=NDUFA12 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/139 (42%), Positives = 83/139 (59%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   +  + T+D K G  VG D++GNKYYE+ + FFGR+RWV+
Sbjct: 4   VQVLKRGLQRITGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWVV 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P   P          H  N++G+ ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHHWLHSITDDPPTTKPLTARKFIWTNHKFNVTGTPEQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KIQ W PPS+
Sbjct: 124 YVPYSTTRKKIQEWIPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Pongo pygmaeus (taxid: 9600)

>sp|Q7TMF3|NDUAC_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Mus musculus GN=Ndufa12 PE=1 SV=2

 Score =  113 bits (282), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/139 (41%), Positives = 82/139 (58%), Gaps = 5/139 (3%)

Query: 10  INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
           + VL+   +    +GGL+   +  +  +D++ G  VG D++GNKYYE+ + FFGR+RWVI
Sbjct: 4   VEVLKRGVQQVTGHGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVI 63

Query: 70  YNPDVG-----LNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNKE 124
           Y  ++       + DGSMVP EW+ WLH  TD  P  +P          H  N+S + ++
Sbjct: 64  YTTEMNGKNTFWDVDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIWTNHKFNVSATPEQ 123

Query: 125 YVPYSTTRDKIQAWTPPSS 143
           YVPYSTTR KI  W PPS+
Sbjct: 124 YVPYSTTRKKIHEWVPPST 142

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Mus musculus (taxid: 10090)

>sp|Q54MV7|NDUAC_DICDI NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Dictyostelium discoideum GN=ndufa12 PE=2 SV=2

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 63/104 (60%), Gaps = 5/104 (4%)

Query: 25  GLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVP 84
           G+K   KTLY T +LKFG  VG+D+ GN+YYEN +  +GR+RWV Y  D   N D + +P
Sbjct: 15  GIKESIKTLYYTGELKFGTLVGVDKVGNRYYENRQEIYGRHRWVEYG-DYKSN-DPTTIP 72

Query: 85  AEWYGWLHYKTDYTPCED-PGRPVYKWMAEHTQNMSGSNKEYVP 127
            E++ W+H+ +D  P E  P  P YK    H  N +G++  Y P
Sbjct: 73  PEYHSWIHHVSDKLPSEMLPFSPTYK--RPHIANPTGTDGAYTP 114

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9M9M9|NDUAC_ARATH Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1

 Score = 68.9 bits (167), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 40/110 (36%), Positives = 57/110 (51%), Gaps = 12/110 (10%)

Query: 45  VGIDQFGNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDP 103
           VG+D+FGNKYY+      +GR+RWV Y       Y+ S VPAEW+GWLH+ TD+T  E  
Sbjct: 52  VGVDKFGNKYYQKLGDTQYGRHRWVEYASKD--RYNASQVPAEWHGWLHFITDHTGDELL 109

Query: 104 GRPVYKWMAEHTQNMSGSNKEYVPYSTTR---------DKIQAWTPPSSS 144
                ++  EH +N SG    Y+ +S             + Q+W P  + 
Sbjct: 110 SLKPKRYGLEHKENFSGEGDAYIYHSKGHTLNPGQKNWTRYQSWVPTKTQ 159

Accessory subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I), that is believed not to be involved in catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
288856293	139	NADH dehydrogenase (ubiquinone) 1 alpha	0.919	0.985	0.605	7e-43
24581165	142	CG3214, isoform A [Drosophila melanogast	0.932	0.978	0.561	2e-42
195470805	142	GE15071 [Drosophila yakuba] gi|194173798	0.932	0.978	0.561	2e-42
195342021	142	GM18212 [Drosophila sechellia] gi|195576	0.932	0.978	0.561	3e-42
194854835	141	GG24505 [Drosophila erecta] gi|190660300	0.932	0.985	0.561	3e-42
195437282	141	GK24493 [Drosophila willistoni] gi|19416	0.919	0.971	0.562	3e-42
383861823	139	PREDICTED: probable NADH dehydrogenase [	0.932	1.0	0.575	4e-42
38048633	142	similar to Drosophila melanogaster CG321	0.932	0.978	0.553	4e-42
332017162	142	Putative NADH dehydrogenase [ubiquinone]	0.953	1.0	0.549	1e-41
125984440	142	GA16708 [Drosophila pseudoobscura pseudo	0.932	0.978	0.553	2e-41

>gi|288856293|ref|NP_001165800.1| NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12 [Nasonia vitripennis]

 Score =  178 bits (451), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 83/137 (60%), Positives = 102/137 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  +LG++ + N  +I K NGG+    +TLY  D+LKFG  VG D++GNKYYEN  YF G
Sbjct: 1   MAKWLGLDKVNNFLQIIKHNGGIWGSLRTLYRMDELKFGDCVGEDKYGNKYYENNMYFVG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRWV+YNP V LNYD S VPAEW+GWLHYKTD  P  DP RP YKWM EHT N+SG++K
Sbjct: 61  RNRWVVYNPKVHLNYDASQVPAEWFGWLHYKTDLLPHRDPHRPKYKWMVEHTPNLSGTDK 120

Query: 124 EYVPYSTTRDKIQAWTP 140
            Y+PYSTT+ KI+AW P
Sbjct: 121 AYMPYSTTKPKIEAWQP 137

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24581165|ref|NP_608692.1| CG3214, isoform A [Drosophila melanogaster] gi|221330629|ref|NP_001137770.1| CG3214, isoform B [Drosophila melanogaster] gi|442625489|ref|NP_001259944.1| CG3214, isoform C [Drosophila melanogaster] gi|7295939|gb|AAF51238.1| CG3214, isoform A [Drosophila melanogaster] gi|220901911|gb|ACL82977.1| CG3214, isoform B [Drosophila melanogaster] gi|440213210|gb|AGB92481.1| CG3214, isoform C [Drosophila melanogaster]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 104/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L ++ +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLTKLFQMVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP YKW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKYKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y PYSTT +K++AW P +
Sbjct: 121 AYYPYSTTPNKVEAWEPKA 139

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195470805|ref|XP_002087697.1| GE15071 [Drosophila yakuba] gi|194173798|gb|EDW87409.1| GE15071 [Drosophila yakuba]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 104/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L +I +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLSKLFQIVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP +KW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKHKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y PYSTT +K++AW P +
Sbjct: 121 AYYPYSTTPNKVEAWDPKA 139

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195342021|ref|XP_002037600.1| GM18212 [Drosophila sechellia] gi|195576075|ref|XP_002077902.1| GD22820 [Drosophila simulans] gi|194132450|gb|EDW54018.1| GM18212 [Drosophila sechellia] gi|194189911|gb|EDX03487.1| GD22820 [Drosophila simulans]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 104/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L +I +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLTKLFQIVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP +KW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKHKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y PYSTT +K++AW P +
Sbjct: 121 AYYPYSTTPNKVEAWDPKA 139

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194854835|ref|XP_001968433.1| GG24505 [Drosophila erecta] gi|190660300|gb|EDV57492.1| GG24505 [Drosophila erecta]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/139 (56%), Positives = 104/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L +I +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLTKLFQIVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP +KW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKHKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y PYSTT +K++AW P +
Sbjct: 121 AYYPYSTTPNKVEAWDPKA 139

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437282|ref|XP_002066569.1| GK24493 [Drosophila willistoni] gi|194162654|gb|EDW77555.1| GK24493 [Drosophila willistoni]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/137 (56%), Positives = 103/137 (75%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L +I +E+GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLAKLFQIIRESGGLKQTYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGS +PA+WYGW+HYKTD  P  D  RP YKW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSQIPADWYGWMHYKTDLPPIRDGSRPKYKWLADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTP 140
            Y+PYSTT  K++AW P
Sbjct: 121 AYMPYSTTPPKVEAWDP 137

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383861823|ref|XP_003706384.1| PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12-like [Megachile rotundata]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 80/139 (57%), Positives = 105/139 (75%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  +LG++ +  L +I KENGGL N  +TLY  D+LK G  VG D++GNKYYEN  YF+G
Sbjct: 1   MARWLGLDKVVKLFEIIKENGGLINSMRTLYRMDELKSGTLVGEDKYGNKYYENNSYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
            NRWV+Y+  VG+ YDGS VPAEW+GWLHYKTD  P +DPGRP +KWMA+H +NM+G+ +
Sbjct: 61  SNRWVVYSERVGMEYDGSQVPAEWFGWLHYKTDLLPHQDPGRPKHKWMADHKENMTGTYE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y+PYSTT+ KI+ W PP 
Sbjct: 121 AYMPYSTTKPKIEPWKPPQ 139

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|38048633|gb|AAR10219.1| similar to Drosophila melanogaster CG3214, partial [Drosophila yakuba]

 Score =  175 bits (444), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 104/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLGIN L  L +I +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGINRLSKLFQIVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP +KW+A+H++N+SG+ +
Sbjct: 61  RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKHKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y PY+TT +K++AW P +
Sbjct: 121 AYYPYTTTPNKVEAWDPKA 139

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332017162|gb|EGI57961.1| Putative NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 [Acromyrmex echinatior]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 100/142 (70%)

Query: 1   MSKLKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRY 60
           M+ L   LG++    L +  +++GG+   +KT +  D+LK G  +G D++GN+YYEN  Y
Sbjct: 1   MANLTKLLGLDKFATLFRTIRDHGGIIGSFKTFFRVDELKSGTLIGEDKYGNRYYENNMY 60

Query: 61  FFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG 120
           F GRNRWVIY   VGLNYDGS VP EW+GWLHYKTD  P EDP RP YKWM +H  NMSG
Sbjct: 61  FLGRNRWVIYADKVGLNYDGSQVPPEWFGWLHYKTDLPPHEDPSRPKYKWMMDHQPNMSG 120

Query: 121 SNKEYVPYSTTRDKIQAWTPPS 142
           +++ Y+PYSTTR KI+ W PP 
Sbjct: 121 TDQAYMPYSTTRSKIEPWRPPQ 142

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

>gi|125984440|ref|XP_001355984.1| GA16708 [Drosophila pseudoobscura pseudoobscura] gi|195161370|ref|XP_002021541.1| GL26457 [Drosophila persimilis] gi|54644302|gb|EAL33043.1| GA16708 [Drosophila pseudoobscura pseudoobscura] gi|194103341|gb|EDW25384.1| GL26457 [Drosophila persimilis]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 77/139 (55%), Positives = 103/139 (74%)

Query: 4   LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
           +  FLG+N L  L +I +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct: 1   MAKFLGLNRLTKLFQIVQECGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query: 64  RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
           RNRWV + P V ++YDGS +PAEWYGW+HYKTD  P  D  RP YKW+A+H++N+SG+ +
Sbjct: 61  RNRWVEFTPHVNMDYDGSQIPAEWYGWMHYKTDLPPIRDGCRPKYKWIADHSENLSGTKE 120

Query: 124 EYVPYSTTRDKIQAWTPPS 142
            Y+PY+TT  K++AW P +
Sbjct: 121 AYMPYTTTPPKVEAWDPSA 139

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
FB|FBgn0031436	142	CG3214 [Drosophila melanogaste	0.919	0.964	0.569	7.1e-45
WB|WBGene00022380	146	Y94H6A.8.2 [Caenorhabditis ele	0.912	0.931	0.485	2.6e-31
UNIPROTKB|F1NW95	149	NDUFA12 "Uncharacterized prote	0.906	0.906	0.458	3.9e-28
UNIPROTKB|O97725	145	NDUFA12 "NADH dehydrogenase [u	0.805	0.827	0.480	5e-28
UNIPROTKB|F1SQP4	147	NDUFA12 "Uncharacterized prote	0.805	0.816	0.472	6.4e-28
UNIPROTKB|F1PWZ9	145	NDUFA12 "Uncharacterized prote	0.791	0.813	0.480	1e-27
UNIPROTKB|Q9UI09	145	NDUFA12 "NADH dehydrogenase [u	0.885	0.910	0.453	1.7e-27
ZFIN|ZDB-GENE-050828-1	146	ndufa12 "NADH dehydrogenase (u	0.812	0.828	0.484	2.8e-27
RGD|1311462	148	Ndufa12 "NADH dehydrogenase (u	0.805	0.810	0.464	5.7e-27
MGI|MGI:1913664	145	Ndufa12 "NADH dehydrogenase (u	0.805	0.827	0.456	9.4e-27

FB|FBgn0031436 CG3214 [Drosophila melanogaster (taxid:7227)]

 Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
 Identities = 78/137 (56%), Positives = 103/137 (75%)

Query:     4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
             +  FLGIN L  L ++ +E GGLK  +  LY  DDLK G  VGID++GNKY+ENP YF+G
Sbjct:     1 MAKFLGINRLTKLFQMVREAGGLKQAYLKLYRNDDLKIGTLVGIDKYGNKYFENPYYFYG 60

Query:    64 RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSNK 123
             RNRW+ + P V ++YDGSM+PAEWYGW+HYKTD  P  D  RP YKW+A+H++N+SG+ +
Sbjct:    61 RNRWIEFAPHVNMDYDGSMIPAEWYGWMHYKTDLPPIRDGCRPKYKWIADHSENLSGTKE 120

Query:   124 EYVPYSTTRDKIQAWTP 140
              Y PYSTT +K++AW P
Sbjct:   121 AYYPYSTTPNKVEAWEP 137

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=ISS

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISS

GO:0006120 "mitochondrial electron transport, NADH to ubiquinone" evidence=ISS

GO:0003954 "NADH dehydrogenase activity" evidence=ISS

GO:0009055 "electron carrier activity" evidence=IEA

WB|WBGene00022380 Y94H6A.8.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 67/138 (48%), Positives = 86/138 (62%)

Query:     4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFG 63
             LK +LGI+ ++   ++ KE GG+K   K  YL D  + G  VG D FGN+YYEN  YF  
Sbjct:     3 LKAWLGIDKIQKFGQMVKEIGGVKAVLKKRYLMDATRVGTLVGSDNFGNRYYENNAYFVP 62

Query:    64 RNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMS-GSN 122
             RNRWV +   V L+YD + VP EW+ WLH+ TD  P   P  P   W+ EH +N S  ++
Sbjct:    63 RNRWVEFPDKVWLDYDATQVPPEWHSWLHHITDDAPSVKPP-PTQDWVLEHKENTSIYAD 121

Query:   123 KEYVPYSTTRDKIQAWTP 140
             K+YVPYSTTR KIQ W P
Sbjct:   122 KKYVPYSTTRTKIQGWQP 139

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NW95 NDUFA12 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
 Identities = 66/144 (45%), Positives = 91/144 (63%)

Query:    10 INVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVI 69
             + V++   K    +GG++     L   +DLK G  VG+D++GNKYYE+ R FFGR+RWV+
Sbjct:     8 VQVVKRAFKHLGGHGGVRGAILQLLRVNDLKTGTLVGVDKYGNKYYEDKRNFFGRHRWVV 67

Query:    70 YNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDPGRPVY-KWMAE-HTQNMSGSN 122
             Y  ++ G N     DGSMVP EW+ WLH  TD  P   P  PV  K++ E H  N+SG+ 
Sbjct:    68 YTSEMNGKNTFWEVDGSMVPPEWHRWLHSMTDDPPTTHP--PVARKFIWENHKFNLSGTP 125

Query:   123 KEYVPYSTTRDKIQAWTPPSSSGR 146
              +YVPYSTTR KIQ W PP+++ +
Sbjct:   126 GQYVPYSTTRKKIQEWIPPTTASK 149

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEA

UNIPROTKB|O97725 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Bos taurus (taxid:9913)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/127 (48%), Positives = 83/127 (65%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDV-GLN---- 77
             +GGL+   + L+  +D++ G  VG D++GNKYYE+ + FFGR+RWVIY  ++ G N    
Sbjct:    17 HGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWD 76

Query:    78 YDGSMVPAEWYGWLHYKTDYTPC-EDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ 136
              DGSMVP EW+ WLH  TD  P  + P    + W   H  N+SG+ ++YVPYSTTR KIQ
Sbjct:    77 VDGSMVPPEWHRWLHCMTDDPPTVKPPTARKFIW-TNHKFNLSGTPQQYVPYSTTRKKIQ 135

Query:   137 AWTPPSS 143
              W PPS+
Sbjct:   136 EWVPPST 142

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1SQP4 NDUFA12 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 60/127 (47%), Positives = 82/127 (64%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVG-----LN 77
             +GGL+   + L+  +D++ G  VG D++GNKYYE+ + FFGR+RWVIY  ++       +
Sbjct:    19 HGGLRGYLRVLFRANDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGRDTFWD 78

Query:    78 YDGSMVPAEWYGWLHYKTDYTPC-EDPGRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ 136
              DGSMVP EW+ WLH  TD  P  + P    Y W   H  N+SG+ ++YVPYSTTR KIQ
Sbjct:    79 VDGSMVPPEWHRWLHCMTDDPPTTKPPTARKYIW-TNHKFNVSGTPQQYVPYSTTRKKIQ 137

Query:   137 AWTPPSS 143
              W PPS+
Sbjct:   138 EWVPPST 144

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|F1PWZ9 NDUFA12 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 62/129 (48%), Positives = 84/129 (65%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDV-GLN---- 77
             +GGL+   +  + T+D++ G  VG D++GNKYYE+ + FFGR+RWVIY  ++ G N    
Sbjct:    17 HGGLRGYLRVFFRTNDVRVGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWD 76

Query:    78 YDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYK---WMAEHTQNMSGSNKEYVPYSTTRDK 134
              DGSMVP EW+ WLH  TD  P   P  PV +   W   H  N+SG+ ++YVPYSTTR K
Sbjct:    77 VDGSMVPPEWHRWLHCMTDDPPTVKP--PVARKFIW-TNHKFNVSGTPEQYVPYSTTRKK 133

Query:   135 IQAWTPPSS 143
             IQ W PP++
Sbjct:   134 IQEWVPPAT 142

GO:0006979 "response to oxidative stress" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

UNIPROTKB|Q9UI09 NDUFA12 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 64/141 (45%), Positives = 89/141 (63%)

Query:    10 INVLEN-LRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWV 68
             + VL+  L++I   +GGL+   +  + T+D K G  VG D++GNKYYE+ + FFGR+RWV
Sbjct:     4 VQVLKRGLQQI-TGHGGLRGYLRVFFRTNDAKVGTLVGEDKYGNKYYEDNKQFFGRHRWV 62

Query:    69 IYNPDV-GLN----YDGSMVPAEWYGWLHYKTDYTPCEDP-GRPVYKWMAEHTQNMSGSN 122
             +Y  ++ G N     DGSMVP EW+ WLH  TD  P   P     + W   H  N++G+ 
Sbjct:    63 VYTTEMNGKNTFWDVDGSMVPPEWHRWLHSMTDDPPTTKPLTARKFIW-TNHKFNVTGTP 121

Query:   123 KEYVPYSTTRDKIQAWTPPSS 143
             ++YVPYSTTR KIQ W PPS+
Sbjct:   122 EQYVPYSTTRKKIQEWIPPST 142

GO:0009055 "electron carrier activity" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=NAS

GO:0007585 "respiratory gaseous exchange" evidence=NAS

GO:0003954 "NADH dehydrogenase activity" evidence=NAS

GO:0006979 "response to oxidative stress" evidence=IDA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

GO:0005739 "mitochondrion" evidence=IDA

ZFIN|ZDB-GENE-050828-1 ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Danio rerio (taxid:7955)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/128 (48%), Positives = 81/128 (63%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDV-GLN---- 77
             +GG+K     L+   + K G  +G D++GNKYYE+ R+FFGR+RWVIY  ++ G N    
Sbjct:    18 HGGVKGFLVQLFRVQETKTGALIGTDKYGNKYYEDNRFFFGRHRWVIYTTEMNGKNTFWD 77

Query:    78 YDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAE-HTQNMSGSNKEYVPYSTTRDKIQ 136
              DGSMVPAEW+ WLH  TD  P   P  P  K++A+ H  N+SG+   YVP+STTR KI 
Sbjct:    78 VDGSMVPAEWHRWLHCMTDDPPTTHPPEPK-KFLAKVHQINLSGTPDCYVPFSTTRKKIH 136

Query:   137 AWTPPSSS 144
              W PP  S
Sbjct:   137 EWVPPKVS 144

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

RGD|1311462 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Rattus norvegicus (taxid:10116)]

 Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
 Identities = 59/127 (46%), Positives = 80/127 (62%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDV-GLN---- 77
             +GGL+   +  +  +D++ G  VG D++GNKYYE+ + FFGR+RWVIY  ++ G N    
Sbjct:    20 HGGLRGLLRVFFRANDIRLGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWD 79

Query:    78 YDGSMVPAEWYGWLHYKTDYTPCEDP-GRPVYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ 136
              DGSMVP EW+ WLH  TD  P   P     + W   H  N+S + ++YVPYSTTR KIQ
Sbjct:    80 VDGSMVPPEWHRWLHCMTDDPPTTKPLTARKFIW-TNHKFNVSATPEQYVPYSTTRKKIQ 138

Query:   137 AWTPPSS 143
              W PPS+
Sbjct:   139 EWVPPST 145

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005747 "mitochondrial respiratory chain complex I" evidence=IEA;ISO

GO:0006979 "response to oxidative stress" evidence=IEA;ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

MGI|MGI:1913664 Ndufa12 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 12" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 58/127 (45%), Positives = 80/127 (62%)

Query:    23 NGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDV-GLN---- 77
             +GGL+   +  +  +D++ G  VG D++GNKYYE+ + FFGR+RWVIY  ++ G N    
Sbjct:    17 HGGLRGLLRVFFRANDIRIGTLVGEDKYGNKYYEDNKQFFGRHRWVIYTTEMNGKNTFWD 76

Query:    78 YDGSMVPAEWYGWLHYKTDYTPCEDPGRP-VYKWMAEHTQNMSGSNKEYVPYSTTRDKIQ 136
              DGSMVP EW+ WLH  TD  P  +P     + W   H  N+S + ++YVPYSTTR KI 
Sbjct:    77 VDGSMVPPEWHRWLHCMTDDPPTTNPPTARKFIW-TNHKFNVSATPEQYVPYSTTRKKIH 135

Query:   137 AWTPPSS 143
              W PPS+
Sbjct:   136 EWVPPST 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005747 "mitochondrial respiratory chain complex I" evidence=ISO

GO:0006810 "transport" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=ISO

GO:0008137 "NADH dehydrogenase (ubiquinone) activity" evidence=IEA

GO:0009055 "electron carrier activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0022900 "electron transport chain" evidence=IEA

GO:0070469 "respiratory chain" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9N2W7	NDUAC_CAEEL	No assigned EC number	0.4855	0.9127	0.9315	yes	N/A
O97725	NDUAC_BOVIN	No assigned EC number	0.4316	0.8993	0.9241	yes	N/A
Q9UI09	NDUAC_HUMAN	No assigned EC number	0.4244	0.8993	0.9241	yes	N/A
Q7TMF3	NDUAC_MOUSE	No assigned EC number	0.4100	0.8993	0.9241	yes	N/A
Q54MV7	NDUAC_DICDI	No assigned EC number	0.4326	0.6644	0.7173	yes	N/A
Q9M9M9	NDUAC_ARATH	No assigned EC number	0.3636	0.6577	0.6163	yes	N/A
Q0MQ87	NDUAC_PANTR	No assigned EC number	0.4244	0.8993	0.9241	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	149
pfam05071	100	pfam05071, NDUFA12, NADH ubiquinone oxidoreductase	2e-37
PRK08183	133	PRK08183, PRK08183, NADH dehydrogenase; Validated	1e-21
PLN03095	115	PLN03095, PLN03095, NADH:ubiquinone oxidoreductase	2e-18
PLN02732	159	PLN02732, PLN02732, Probable NADH dehydrogenase [u	7e-18
COG3761	118	COG3761, COG3761, NADH:ubiquinone oxidoreductase 1	3e-14
PRK06630	99	PRK06630, PRK06630, hypothetical protein; Provisio	0.003

>gnl|CDD|218414 pfam05071, NDUFA12, NADH ubiquinone oxidoreductase subunit NDUFA12

 Score =  123 bits (310), Expect = 2e-37
 Identities = 45/105 (42%), Positives = 55/105 (52%), Gaps = 11/105 (10%)

Query: 42  GKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCE 101
           G  VG D+FGNKYYEN     GR RWVIYN       + S VP EW+GWLH+ TD  P E
Sbjct: 1   GTLVGEDEFGNKYYENKDELGGRRRWVIYNGKA----EASRVPPEWHGWLHHTTDEPPTE 56

Query: 102 DPGRPVYKWMAEHTQNMSGSNKEYVPYST------TRDKIQAWTP 140
           +P      W   H  N++G+   Y PY +           +AWTP
Sbjct: 57  EP-LKPRAWEKPHQPNLTGTPGAYRPYGSLLRRPRATGDYEAWTP 100

This family contains the 17.2 kD subunit of complex I (NDUFA12) and its homologues. The family also contains a second related eukaryotic protein of unknown function, . Length = 100

>gnl|CDD|236176 PRK08183, PRK08183, NADH dehydrogenase; Validated

 Score = 83.9 bits (208), Expect = 1e-21
 Identities = 40/113 (35%), Positives = 55/113 (48%), Gaps = 17/113 (15%)

Query: 40  KFGKYVGIDQFGNKYYEN--PRYFFGRN-RWVIYNPDVGLNYDGSMVPAEWYGWLHYKTD 96
           + G+ VG D+FGN YY     +   GR  RWVIYN       + S +P EW+GWLH+  D
Sbjct: 24  RKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGYA----EASRIPPEWHGWLHHTVD 79

Query: 97  YTPCEDPGRPVYKWMAEHTQNMSGSNKEYVP-----YSTTRDKI----QAWTP 140
             P ++P  P  +W   H  N++G+   Y P         R +      AWTP
Sbjct: 80  VPPTKEPYPP-REWEKPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTP 131

Length = 133

>gnl|CDD|215571 PLN03095, PLN03095, NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

 Score = 75.3 bits (185), Expect = 2e-18
 Identities = 38/111 (34%), Positives = 54/111 (48%), Gaps = 12/111 (10%)

Query: 40  KFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTP 99
           + G+ VG D+FGNKYYENP Y  GR+RWV Y      +Y+ S +P EW+GWLHY  D   
Sbjct: 8   RAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADK--DDYNASNIPPEWHGWLHYVNDEPG 65

Query: 100 CEDPGRPVYKWMAEHTQNMSGSNKEYV---------PYSTTRDKIQAWTPP 141
            E   R   ++  E     + +  +Y+                +   W+PP
Sbjct: 66  -ELEDRTAPRYQLEFIAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP 115

Length = 115

>gnl|CDD|215389 PLN02732, PLN02732, Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

 Score = 75.0 bits (184), Expect = 7e-18
 Identities = 42/108 (38%), Positives = 60/108 (55%), Gaps = 12/108 (11%)

Query: 43  KYVGIDQFGNKYYEN-PRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCE 101
             VG+D+FGNKYY+      +GR+RWV Y       Y+ S VPAEW+GWLH+ TD+T  E
Sbjct: 50  TLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEKS--RYNASQVPAEWHGWLHFITDHTGDE 107

Query: 102 DPGRPVYKWMAEHTQNMSGSNKEYVPYST-------TRD--KIQAWTP 140
                  ++  EH +N SG  +EY+ +S         +D  + Q+W P
Sbjct: 108 LLMLKPKRYGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQP 155

Length = 159

>gnl|CDD|226284 COG3761, COG3761, NADH:ubiquinone oxidoreductase 17

 Score = 64.2 bits (156), Expect = 3e-14
 Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 18/113 (15%)

Query: 40  KFGKYVGIDQFGNKYYE--NPRYFFGRNRWVIYNPDVGLNY-DGSMVPAEWYGWLHYKTD 96
           +F K VG D+FGN YYE  N        RWVIYN      Y + S +P  W+GWLH++ D
Sbjct: 11  RFHKKVGEDEFGNVYYEGRNIDSEGRTRRWVIYN-----GYAEASKIPPGWHGWLHHRVD 65

Query: 97  YTPCEDPGRPVYKWMAEHTQNMSGSNKEYVPYS---------TTRDKIQAWTP 140
             P  +   P  +W   H  N++G+   Y P                  AWTP
Sbjct: 66  EPPKSEQLFP-REWQKPHLPNLTGTPHAYRPKGSLARAGERPRVTGDYDAWTP 117

2 kD subunit [Energy production and conversion]. Length = 118

>gnl|CDD|168631 PRK06630, PRK06630, hypothetical protein; Provisional

 Score = 34.9 bits (80), Expect = 0.003
 Identities = 23/61 (37%), Positives = 33/61 (54%), Gaps = 6/61 (9%)

Query: 41 FGKYVGIDQFGNKYYE--NPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYT 98
          F K VG D+F N+YYE  N  Y     R+VIY     +N + + +P  W+ WLH+  +  
Sbjct: 12 FHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYK---NVN-EPTKIPPSWHAWLHHLVNEI 67

Query: 99 P 99
          P
Sbjct: 68 P 68

Length = 99

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
KOG3382|consensus	151		100.0
PLN02732	159	Probable NADH dehydrogenase [ubiquinone] 1 alpha s	100.0
PRK08183	133	NADH dehydrogenase; Validated	100.0
PLN03095	115	NADH:ubiquinone oxidoreductase 18 kDa subunit; Pro	100.0
PF05071	105	NDUFA12: NADH ubiquinone oxidoreductase subunit ND	100.0
COG3761	118	NADH:ubiquinone oxidoreductase 17.2 kD subunit [En	99.97
PRK06630	99	hypothetical protein; Provisional	99.96
PF15613	38	WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2	91.49

>KOG3382|consensus

Probab=100.00  E-value=1.1e-50  Score=310.48  Aligned_cols=141  Identities=51%  Similarity=0.956  Sum_probs=135.6

Q ss_pred             hhhhhhHHHHHHHHHHHHHhCcHHHHHHHHHhhcccccCeEEeeeCCCCEEeecCCCCCCcceEEEcCCCCCcCcCCCCC
Q psy291            4 LKNFLGINVLENLRKIYKENGGLKNCWKTLYLTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMV   83 (149)
Q Consensus         4 ~~~~~~~~~~~~~~~~i~~~~G~r~~l~~l~r~~~~k~g~lVG~D~~GNkYYE~~~~~~gr~RwV~y~~~~~~~~d~s~I   83 (149)
                      |++++|++.|.+..+.|++.||+|.+++.+||.++.+.|+|||.|+|||||||++.++.||+|||+|+++.++|||+|+|
T Consensus         9 ~~~~l~i~~l~k~~qmire~Gglr~~~~k~yrtd~~kiGTLVG~DkfGNkYyen~~~fygRhRWVeya~kv~~Dyd~S~V   88 (151)
T KOG3382|consen    9 ALEALGIKGLGKFMQMIREEGGLRCLLDKLYRTDDHKIGTLVGVDKFGNKYYENNDYFYGRHRWVEYASKVNWDYDASQV   88 (151)
T ss_pred             HHHHHhHHHHHHHHHHHHhhccHHHHHHHHHhcccccceeeeeecccccchhcccceecccceeEEecccccccccccCC
Confidence            56799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC-CCCCccCCCCCCCCccccCCCCCC
Q psy291           84 PAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG-SNKEYVPYSTTRDKIQAWTPPSSS  144 (149)
Q Consensus        84 PpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg-t~~aY~P~~t~r~ky~~W~P~~~~  144 (149)
                      |||||+|||+++|+||+..-.++.++|..+|.+|+|| |..+|.||+|+|.|||+|.|..+.
T Consensus        89 P~EWh~WlH~iTD~~p~~~~~~~~~k~i~eHkeN~Sg~t~e~y~Pystt~tkiq~W~P~~t~  150 (151)
T KOG3382|consen   89 PAEWHGWLHFITDDPPDEKLPLPPKKWILEHKENFSGETGETYVPYSTTRTKIQSWVPTKTP  150 (151)
T ss_pred             CHHHHhHhHhhccCCccccCCCCHHHHhHhccccccccCCceeccCcCChhHhheecCCCCC
Confidence            9999999999999999988558889999999999999 999999999999999999998654

>PLN02732 Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit

Probab=100.00  E-value=2.5e-45  Score=287.76  Aligned_cols=131  Identities=34%  Similarity=0.617  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHhhcccc-----------c----CeEEeeeCCCCEEeecCC-CCCCcceEEEcCCC
Q psy291           10 INVLENLRKIYKENGGLKNCWKTLYLTDDLK-----------F----GKYVGIDQFGNKYYENPR-YFFGRNRWVIYNPD   73 (149)
Q Consensus        10 ~~~~~~~~~~i~~~~G~r~~l~~l~r~~~~k-----------~----g~lVG~D~~GNkYYE~~~-~~~gr~RwV~y~~~   73 (149)
                      +++|++++++|+++ |+++++++|+++++.|           .    |+|||+|+|||+|||+++ ...||+|||+|++.
T Consensus         3 ~~~~~~~~~~~~~~-G~~~~~~~l~~~g~~k~~~~g~t~gt~~~~~~G~lVG~D~~GNkYYE~~~~~~~grrRWV~Y~~~   81 (159)
T PLN02732          3 LTVVKSALEAIREK-GLGGFLRMLREEGYLRCLADGNLLQTKIHNIGATLVGVDKFGNKYYQKLGDTQYGRHRWVEYAEK   81 (159)
T ss_pred             HHHHHHHHHHHHHh-hHHHHHHHHHHccchhhccCcceeeeEEEeeCcEEEEecCCCCeeeecCCCCCCCceeEEEeCCC
Confidence            78999999999999 9999999999999977           6    999999999999999995 45689999999986


Q ss_pred             CCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCCCC--CCccCCCC-------CCCCccccCCCCC
Q psy291           74 VGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSGSN--KEYVPYST-------TRDKIQAWTPPSS  143 (149)
Q Consensus        74 ~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tgt~--~aY~P~~t-------~r~ky~~W~P~~~  143 (149)
                        .+||+|+||||||+||||++|+||++.+.+..+.|+++|++|+|||+  .+|+|.++       ++.+||+|+|+..
T Consensus        82 --~~~daS~VPpeWH~WLH~~~D~pP~~~~~~~~~~w~~~H~pNlTGT~~~~ay~p~Gs~~~~g~~~~~dYeaW~P~~~  158 (159)
T PLN02732         82 --SRYNASQVPAEWHGWLHFITDHTGDELLMLKPKRYGLEHKENFSGEGEEYIYHSKGHTLNPGQKDWTRYQSWQPTKT  158 (159)
T ss_pred             --ccCCcCcCCchhhhhhccccCCCCccccccCCCccccCCCCCcCCCCCCceECCCcccccCCCCcccCccCCCCCCC
Confidence              25899999999999999999999987333566789999999999998  67777654       3468999999865

>PRK08183 NADH dehydrogenase; Validated

Probab=100.00  E-value=7.9e-42  Score=261.60  Aligned_cols=103  Identities=36%  Similarity=0.689  Sum_probs=91.8

Q ss_pred             hhcccccCeEEeeeCCCCEEeecCCC---CCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCcccc
Q psy291           35 LTDDLKFGKYVGIDQFGNKYYENPRY---FFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWM  111 (149)
Q Consensus        35 r~~~~k~g~lVG~D~~GNkYYE~~~~---~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~  111 (149)
                      +++.+|.|+|||+|++||+|||+++.   ..+++|||+|++.    +|+|+||||||+||||++|+|||+++ +..++|+
T Consensus        19 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~~~~~rRWV~Y~~~----~d~s~IPpeWh~WLh~~~d~pPt~~~-~~~~~w~   93 (133)
T PRK08183         19 RFFTWRKGERVGEDEFGNVYYRTKGGKPSDGRERRWVIYNGY----AEASRIPPEWHGWLHHTVDVPPTKEP-YPPREWE   93 (133)
T ss_pred             eeehhccCeEeEecCCCCeeeecCCccccCCCceEEEEeCCC----CCccccCchHHhhhccCcCCCCCccc-cCCCccc
Confidence            46678999999999999999999873   3466999999985    89999999999999999999999988 6778899


Q ss_pred             ccCcCCCCCCCCCccCCCC---------CCCCccccCCCC
Q psy291          112 AEHTQNMSGSNKEYVPYST---------TRDKIQAWTPPS  142 (149)
Q Consensus       112 ~~h~~N~Tgt~~aY~P~~t---------~r~ky~~W~P~~  142 (149)
                      ++|++|+|||+.||+|+++         +..+||+|+|+.
T Consensus        94 ~~H~~N~TGT~~aY~P~G~~~~~~~r~~~~~dY~aW~P~~  133 (133)
T PRK08183         94 KPHQPNLTGTPLAYRPKGSILRGGERPRATGDYDAWTPGN  133 (133)
T ss_pred             cCCCCCCCCCccceeCCCccccCCcCCcccCCcccCCCCC
Confidence            9999999999999999976         235899999973

>PLN03095 NADH:ubiquinone oxidoreductase 18 kDa subunit; Provisional

Probab=100.00  E-value=1.1e-41  Score=255.18  Aligned_cols=104  Identities=38%  Similarity=0.767  Sum_probs=94.2

Q ss_pred             hhcccccCeEEeeeCCCCEEeecCCCCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccC
Q psy291           35 LTDDLKFGKYVGIDQFGNKYYENPRYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEH  114 (149)
Q Consensus        35 r~~~~k~g~lVG~D~~GNkYYE~~~~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h  114 (149)
                      +++++|.|+|||+|++||+|||++....|++|||+|++.  .+||+|+||||||+||||++|+|||+++ +..+.|+++|
T Consensus         3 ~~~~~r~g~lVG~D~~GNkYYE~~~~~~~rrRWV~Y~~~--~d~d~S~VPpeWH~WLh~~~d~pPt~~~-~~~~~w~~~H   79 (115)
T PLN03095          3 LVLASRAGRLVGEDEFGNKYYENPSYQSGRHRWVEYADK--DDYNASNIPPEWHGWLHYVNDEPGELED-RTAPRYQLEF   79 (115)
T ss_pred             ceeeeecceEeEEcCCCCeeeEcCCCCCCCeEEEEeCCC--ccCCccccCchHhHhhccCcCCCCCccc-cCCCccccCC
Confidence            467889999999999999999999877789999999986  3689999999999999999999999876 7778899999


Q ss_pred             cCCCC--CCCCCccCCCC-------CCCCccccCCC
Q psy291          115 TQNMS--GSNKEYVPYST-------TRDKIQAWTPP  141 (149)
Q Consensus       115 ~~N~T--gt~~aY~P~~t-------~r~ky~~W~P~  141 (149)
                      ++|+|  ||+.||+|.++       ++.+||+|+|+
T Consensus        80 ~~NlT~tGT~~aY~P~Gs~~~~~~~~~~dY~aW~P~  115 (115)
T PLN03095         80 IAGGTTTGTQYMYHPKGHFLSKRPRNWKRYTPWSPP  115 (115)
T ss_pred             CCCcCCCCCccceeCCCccccCCCCcccCccCCCCC
Confidence            99999  89999999976       34689999995

>PF05071 NDUFA12: NADH ubiquinone oxidoreductase subunit NDUFA12; InterPro: IPR007763 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=4.8e-38  Score=231.38  Aligned_cols=95  Identities=44%  Similarity=0.880  Sum_probs=86.8

Q ss_pred             CeEEeeeCCCCEEeecC-CCCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC
Q psy291           42 GKYVGIDQFGNKYYENP-RYFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG  120 (149)
Q Consensus        42 g~lVG~D~~GNkYYE~~-~~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg  120 (149)
                      |+|||+|++||+|||++ ....+++|||+|++..  +|++++||||||+||||++++|||+++ +....|+++|++|+||
T Consensus         1 G~lVG~D~~GN~YyE~~~~~~~~~rRwV~y~~~~--~~~~s~IPpeWh~WL~~~r~~pPt~~~-~~~~~~~~~~~~n~t~   77 (105)
T PF05071_consen    1 GTLVGTDEFGNKYYENPRDEQGRRRRWVEYAGKS--DYDPSQIPPEWHAWLHHTRDEPPTEEE-LARRQWQKPHKPNLTG   77 (105)
T ss_pred             CCEeeEeCCCCEEEeecCCCcCCCcEEEEcCCcc--ccCcCccCcchHHHhccCcCCCCCccc-cchHHHHHHhhhhhhc
Confidence            78999999999999999 5556789999999974  688999999999999999999999777 6788999999999999


Q ss_pred             CCCCccCCCCCCC---------CccccCC
Q psy291          121 SNKEYVPYSTTRD---------KIQAWTP  140 (149)
Q Consensus       121 t~~aY~P~~t~r~---------ky~~W~P  140 (149)
                      |+.+|.|+++ ++         ||++|+|
T Consensus        78 ~~~ay~p~~~-~~~~~~~~~~~~y~~W~P  105 (105)
T PF05071_consen   78 TEEAYRPKGT-KSKEREQRNWKKYEAWTP  105 (105)
T ss_pred             ChHhhcCCCc-ccccccccccCCccCCCC
Confidence            9999999998 44         5999998

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. this entry represents the 17.2kDa subunit from NADH:ubiquinone oxidoreductase and its homologues []. This subunit is believed to be one of the 36 structural complex I proteins.; GO: 0008137 NADH dehydrogenase (ubiquinone) activity, 0009055 electron carrier activity, 0016020 membrane

>COG3761 NADH:ubiquinone oxidoreductase 17

Probab=99.97  E-value=1.1e-32  Score=203.59  Aligned_cols=94  Identities=40%  Similarity=0.769  Sum_probs=84.5

Q ss_pred             eEEeeeCCCCEEeecCC-CCCCc-ceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccccCcCCCCC
Q psy291           43 KYVGIDQFGNKYYENPR-YFFGR-NRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMAEHTQNMSG  120 (149)
Q Consensus        43 ~lVG~D~~GNkYYE~~~-~~~gr-~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~~h~~N~Tg  120 (149)
                      +-||+|+|||.|||... ...|| ||||||++.    .++|.|||+||+||||+.|+||+.+. +..+.||++|.+|+||
T Consensus        14 ~kvGeDefgN~Yye~r~~ds~gr~RRwVIYngy----aEas~IPp~WhgWlHh~vd~~P~~~~-~~~reWqKph~pn~tg   88 (118)
T COG3761          14 KKVGEDEFGNVYYEGRNIDSEGRTRRWVIYNGY----AEASKIPPGWHGWLHHRVDEPPKSEQ-LFPREWQKPHLPNLTG   88 (118)
T ss_pred             HhccchhccceeeeccCCccCCCeeeEEEEcCc----chhccCCCchhhhhhhhccCCccccc-cchhhhccccccCCCC
Confidence            77999999999999853 34566 999999997    78999999999999999999999988 8889999999999999


Q ss_pred             CCCCccCCCCC-----C----CCccccCCC
Q psy291          121 SNKEYVPYSTT-----R----DKIQAWTPP  141 (149)
Q Consensus       121 t~~aY~P~~t~-----r----~ky~~W~P~  141 (149)
                      |..||+|.++.     |    .+|.+|+|.
T Consensus        89 t~~a~rPkgs~~~~gerp~~t~dYdaWtP~  118 (118)
T COG3761          89 TPHAYRPKGSLARAGERPRVTGDYDAWTPG  118 (118)
T ss_pred             CcceeccCccccccCcCccccccccccCCC
Confidence            99999998862     2    489999994

2 kD subunit [Energy production and conversion]

>PRK06630 hypothetical protein; Provisional

Probab=99.96  E-value=5.4e-30  Score=186.92  Aligned_cols=74  Identities=30%  Similarity=0.537  Sum_probs=63.9

Q ss_pred             hhcccccCeEEeeeCCCCEEeecCC--CCCCcceEEEcCCCCCcCcCCCCCCchhhhhhccccCCCCCCCCCCCCccccc
Q psy291           35 LTDDLKFGKYVGIDQFGNKYYENPR--YFFGRNRWVIYNPDVGLNYDGSMVPAEWYGWLHYKTDYTPCEDPGRPVYKWMA  112 (149)
Q Consensus        35 r~~~~k~g~lVG~D~~GNkYYE~~~--~~~gr~RwV~y~~~~~~~~d~s~IPpeWh~WLh~~rd~pPt~~el~~~~~w~~  112 (149)
                      ..++++.|+|||+|++||+|||+.+  ...+++|||+|++.    +|||+||||||+||||+.|+||+  + +..+.||+
T Consensus         6 ~~~t~r~G~lVG~D~~GNkYYE~~~~~~~gr~rRWViY~g~----~daS~VPpeWHgWLHh~~D~pPt--~-~~~k~WqK   78 (99)
T PRK06630          6 KFFITFFHKKVGEDEFLNQYYESRNIDYLGRPRRFVIYKNV----NEPTKIPPSWHAWLHHLVNEIPK--N-IQLFPWQK   78 (99)
T ss_pred             hhhhhccCeEeEEeCCCChhcccCCCccCCCceEEEEeCCC----CccccCCcchhhhhccccCCCCC--C-CCCccccC
Confidence            3467789999999999999999964  33355999999986    89999999999999999999999  3 67899998


Q ss_pred             cCc
Q psy291          113 EHT  115 (149)
Q Consensus       113 ~h~  115 (149)
                      +..
T Consensus        79 p~~   81 (99)
T PRK06630         79 NNK   81 (99)
T ss_pred             cch
Confidence            754

>PF15613 WHIM2: WSTF, HB1, Itc1p, MBD9 motif 2

Probab=91.49  E-value=0.2  Score=30.92  Aligned_cols=15  Identities=40%  Similarity=0.784  Sum_probs=13.3

Q ss_pred             eEEeeeCCCCEEeec
Q psy291           43 KYVGIDQFGNKYYEN   57 (149)
Q Consensus        43 ~lVG~D~~GNkYYE~   57 (149)
                      ..+|.|.+||+||-.
T Consensus         3 ~pLG~DR~~NrYwwf   17 (38)
T PF15613_consen    3 KPLGKDRYGNRYWWF   17 (38)
T ss_pred             ccccccCCCceEEEE
Confidence            457999999999987

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00