Psyllid ID: psy2982

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440---
Protein Sequence
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDPVNA
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccHHHHHHHHHHHHHHHHHHEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHEEEcccccccccccccHHHHHHHHHcccccccccccccccHHHHHHHHHHHccccEEEEEEEcccccEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEcccEEEEEccccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccEEEEEEEcccccccccHHHHHHccccccccccccccccccHHHccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHcccHHHHHHHHHHHHHHHHHHEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHcccHHHEEEcccHHHHcccccHHHHHHHHEEHHccccccccccHHHHHHHHHHHHHHcccEEEEEEEcccccEEEcccccHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEEEccccEEEEcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcHHccHHHHEEEcccHHHHccccHHHHHHHHHEHHcHHHHEEEHHEEEccccccHHHcHHEEHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccc
Coil and Loop (DISEMBL)
lwpqyvrdRITSTYAYFGGSIVLSAASAyavftsptmlrLVSGNSMLAMFGSIALLMGSGMLvqsleykpgfgAKQIAWALHSALVGAVVapicfiggpVLIRAAWYTAGIVGGLStvaacapsdkfltmggplAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVingdgipikttldnqttVQYAGLVSQLVDKAKSVVReidatndlTFLRLRSKKneimiapdKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMlvqsleykpgfgAKQIAWALHSALVGAVVapicfiggpVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYglglssergaqevqYWDWVHYVTMDWDYLVNEELWIMLRSaflppttalgAGLYSITLYGGLLLFSGFLLYDTQKIITraertppyvtydpvna
Flexible Loop (DISEMBL)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKsvvreidatndltflrlrskkneimiapdkqFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIItraertppyvtydpvna
Low Complexity Region (SEG)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFiliittnellllyidlnlTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQgavaggavlglgalcyyglglSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITlygglllfsgfllyDTQKIITRAERTPPYVTYDPVNA
Disordered region (IsUnstruct)
***QYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVT******
Disordered Region (DISOPRED)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYV*YD****
Disordered Region (DISEMBL)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDPVNA
Disordered Region (DISPRO)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDP***
Transmembrane Helix (TMHMM)
oooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDPVNA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	443	2.2.26 [Sep-21-2011]
Q91VC9	346	Growth hormone-inducible	yes	N/A	0.261	0.335	0.575	1e-42
Q9H3K2	345	Growth hormone-inducible	yes	N/A	0.246	0.315	0.568	2e-41
Q5XIA8	346	Growth hormone-inducible	yes	N/A	0.261	0.335	0.582	1e-40
Q9DAJ5	96	Dynein light chain roadbl	no	N/A	0.207	0.958	0.706	1e-33
Q32P85	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.703	4e-33
Q8TF09	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.692	2e-32
P62628	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.648	4e-30
P62627	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.648	4e-30
Q3T140	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.648	4e-30
Q9NP97	96	Dynein light chain roadbl	no	N/A	0.205	0.947	0.637	1e-29

>sp|Q91VC9|GHITM_MOUSE Growth hormone-inducible transmembrane protein OS=Mus musculus GN=Ghitm PE=2 SV=1

 Score =  174 bits (441), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 84/146 (57%), Positives = 110/146 (75%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STY Y  GSI L+A SA AV  +P ++  +   S + +  + A ++G+G
Sbjct: 116 IWPQYVKDRIHSTYMYLAGSIGLTALSALAVARTPALMNFMMTGSWVTIGATFAAMIGAG 175

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           MLV S+ Y+   G K +AW LHS ++GAVVAP+  +GGP+L+RAAWYTAGIVGGLSTVA 
Sbjct: 176 MLVHSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAM 235

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPS+KFL MG PL +GLG+VFASS+
Sbjct: 236 CAPSEKFLNMGAPLGVGLGLVFASSL 261

Required for the mitochondrial tubular network and cristae organization. Involved in apoptotic release of cytochrome c.
Mus musculus (taxid: 10090)

>sp|Q9H3K2|GHITM_HUMAN Growth hormone-inducible transmembrane protein OS=Homo sapiens GN=GHITM PE=1 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/146 (56%), Positives = 109/146 (74%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STY Y  GSI L+A SA A+  +P ++  +   S + +  + A ++G+G
Sbjct: 115 IWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAG 174

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           MLV+S+ Y    G K +AW LHS ++GAVVAP+  +GGP+LIRAAWYTAGIVGGLSTVA 
Sbjct: 175 MLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAM 234

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPS+KFL MG PL +GLG+VF SS+
Sbjct: 235 CAPSEKFLNMGAPLGVGLGLVFVSSL 260

Required for the mitochondrial tubular network and cristae organization. Involved in apoptotic release of cytochrome c.

Homo sapiens (taxid: 9606)

>sp|Q5XIA8|GHITM_RAT Growth hormone-inducible transmembrane protein OS=Rattus norvegicus GN=Ghitm PE=2 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/146 (58%), Positives = 111/146 (76%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STY Y  GSI L+A SA A+  SP ++  +   S + +  + A ++G+G
Sbjct: 116 IWPQYVKDRIHSTYMYLAGSIGLTALSALALARSPALMNFMMTGSWMTIGATFAAMIGAG 175

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           MLVQS+ Y+   G K +AW LHS ++GAVVAP+  +GGP+L+RAAWYTAGIVGGLSTVA 
Sbjct: 176 MLVQSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAM 235

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPS+KFL MG PL +GLG+VFASS+
Sbjct: 236 CAPSEKFLNMGAPLGVGLGLVFASSL 261

Required for the mitochondrial tubular network and cristae organization. Involved in apoptotic release of cytochrome c.

Rattus norvegicus (taxid: 10116)

>sp|Q9DAJ5|DLRB2_MOUSE Dynein light chain roadblock-type 2 OS=Mus musculus GN=Dynlrb2 PE=1 SV=1

 Score =  144 bits (364), Expect = 1e-33,   Method: Composition-based stats.
 Identities = 65/92 (70%), Positives = 80/92 (86%)

Query: 158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREID 217
           TE+EETLKRIQSH+GV G +V+N +GIPI+TTLDN TTVQYAGL+ QL  KAKS VR+ID
Sbjct: 2   TEVEETLKRIQSHKGVIGTMVVNAEGIPIRTTLDNSTTVQYAGLLHQLTMKAKSTVRDID 61

Query: 218 ATNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
             NDLTFLR+RSKK+EIM+APDK+++LI+  N
Sbjct: 62  PQNDLTFLRIRSKKHEIMVAPDKEYLLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Mus musculus (taxid: 10090)

>sp|Q32P85|DLRB2_BOVIN Dynein light chain roadblock-type 2 OS=Bos taurus GN=DYNLRB2 PE=3 SV=1

 Score =  142 bits (359), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 64/91 (70%), Positives = 79/91 (86%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKRIQSH+GV G +V+N +GIPI+TTLDN TTVQYAGL+ QL  KAKS VR+ID 
Sbjct: 3   EVEETLKRIQSHKGVIGTMVVNAEGIPIRTTLDNSTTVQYAGLLHQLTMKAKSTVRDIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKK+EIM+APDK+++LI+  N
Sbjct: 63  QNDLTFLRIRSKKHEIMVAPDKEYLLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Bos taurus (taxid: 9913)

>sp|Q8TF09|DLRB2_HUMAN Dynein light chain roadblock-type 2 OS=Homo sapiens GN=DYNLRB2 PE=1 SV=1

 Score =  140 bits (354), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 63/91 (69%), Positives = 78/91 (85%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKRIQSH+GV G +V+N +GIPI+TTLDN TTVQYAGL+  L  KAKS VR+ID 
Sbjct: 3   EVEETLKRIQSHKGVIGTMVVNAEGIPIRTTLDNSTTVQYAGLLHHLTMKAKSTVRDIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKK+EIM+APDK+++LI+  N
Sbjct: 63  QNDLTFLRIRSKKHEIMVAPDKEYLLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Homo sapiens (taxid: 9606)

>sp|P62628|DLRB1_RAT Dynein light chain roadblock-type 1 OS=Rattus norvegicus GN=Dynlrb1 PE=1 SV=3

 Score =  132 bits (333), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 74/91 (81%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VREID 
Sbjct: 3   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVREIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 63  QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Rattus norvegicus (taxid: 10116)

>sp|P62627|DLRB1_MOUSE Dynein light chain roadblock-type 1 OS=Mus musculus GN=Dynlrb1 PE=1 SV=3

 Score =  132 bits (333), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 74/91 (81%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VREID 
Sbjct: 3   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVREIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 63  QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Mus musculus (taxid: 10090)

>sp|Q3T140|DLRB1_BOVIN Dynein light chain roadblock-type 1 OS=Bos taurus GN=DYNLRB1 PE=3 SV=1

 Score =  132 bits (333), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 59/91 (64%), Positives = 74/91 (81%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VREID 
Sbjct: 3   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVREIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 63  QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Bos taurus (taxid: 9913)

>sp|Q9NP97|DLRB1_HUMAN Dynein light chain roadblock-type 1 OS=Homo sapiens GN=DYNLRB1 PE=1 SV=3

 Score =  131 bits (330), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 58/91 (63%), Positives = 74/91 (81%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 3   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 62

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 63  QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 93

Acts as one of several non-catalytic accessory components of the cytoplasmic dynein 1 complex that are thought to be involved in linking dynein to cargos and to adapter proteins that regulate dynein function. Cytoplasmic dynein 1 acts as a motor for the intracellular retrograde motility of vesicles and organelles along microtubules.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
47217687	562	unnamed protein product [Tetraodon nigro	0.869	0.685	0.377	2e-70
321461113	338	hypothetical protein DAPPUDRAFT_216285 [	0.261	0.343	0.691	8e-55
170037323	337	growth hormone-inducible transmembrane p	0.259	0.341	0.710	2e-53
312379067	310	hypothetical protein AND_09168 [Anophele	0.261	0.374	0.691	4e-53
442754527	337	Putative growth hormone-induced protein	0.257	0.338	0.691	5e-51
194762624	340	GF20290 [Drosophila ananassae] gi|190629	0.261	0.341	0.684	6e-50
195399125	337	GJ15635 [Drosophila virilis] gi|19415059	0.261	0.344	0.650	8e-50
195432160	334	GK19984 [Drosophila willistoni] gi|19416	0.261	0.347	0.657	7e-49
24641180	341	CG2076 [Drosophila melanogaster] gi|7292	0.261	0.340	0.678	1e-48
195479516	339	GE15904 [Drosophila yakuba] gi|194188440	0.266	0.348	0.678	1e-48

>gi|47217687|emb|CAG13318.1| unnamed protein product [Tetraodon nigroviridis]

 Score =  272 bits (696), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 176/466 (37%), Positives = 256/466 (54%), Gaps = 81/466 (17%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STY YF GS+ L+A SA AV  +P ++ L+   S +A+  + A ++ +G
Sbjct: 33  IWPQYVKDRIHSTYMYFAGSVGLTALSAVAVSRNPAIMGLMMSGSWMAIGATFAAMIAAG 92

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            LV+S+ Y+     K +AW LH+ ++GAV+AP+  +GGP+++RAAWYTAGIVGGLSTVA 
Sbjct: 93  TLVRSISYENSPVPKHLAWMLHAGVMGAVIAPLTLLGGPLMLRAAWYTAGIVGGLSTVAM 152

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI---------EFS--------YTKLDIMST----E 159
           CAPS+KFL+MGGPLA+G GVVFASS+          F         Y  L + S     +
Sbjct: 153 CAPSEKFLSMGGPLAVGFGVVFASSLGSMFLPPTSAFGAGLYSVAVYGGLVLFSMFLLYD 212

Query: 160 IEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDAT 219
            ++ +KR ++H  + GV   +    PI     N+   QY      + D+  S       +
Sbjct: 213 TQKVIKRAETHP-LYGVQKYD----PI-----NEIWPQY------VKDRIHSTYMYFAGS 256

Query: 220 NDLTFLRLRSKKNEIMIAPDKQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSL 279
             LT L      + + ++ +   + ++ +           + +  + A ++ +GMLV+S+
Sbjct: 257 VGLTAL------SAVAVSRNPAIMGLMMSGSW--------MAIGATFAAMIAAGMLVRSI 302

Query: 280 EYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGA 339
            Y+     K +AW LH+ ++GAV+AP+  +GGP+++RAAWYTAGIVG             
Sbjct: 303 SYENSPVPKHLAWMLHAGVMGAVIAPLTLLGGPLMLRAAWYTAGIVGGLSTVAMCAPSEK 362

Query: 340 VLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALG 399
            L +G     G G+                                 L S FLPPT+A G
Sbjct: 363 FLSMGGPLAVGFGVVFASS----------------------------LGSMFLPPTSAFG 394

Query: 400 AGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPY--VTYDPVNA 443
           AGLYS+ +YGGL+LFS FLLYDTQK+I RAE  P Y    YDP+NA
Sbjct: 395 AGLYSVAVYGGLVLFSMFLLYDTQKVIKRAETHPLYGVQKYDPINA 440

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|321461113|gb|EFX72148.1| hypothetical protein DAPPUDRAFT_216285 [Daphnia pulex]

 Score =  221 bits (562), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 130/146 (89%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WP+YV++RI STY YFGGS++L+AASA A F SP ++R+V+GNSM+ M GSIA+++G+G
Sbjct: 108 MWPEYVKERIRSTYMYFGGSVMLTAASAVACFRSPLIMRVVAGNSMMVMLGSIAVMIGTG 167

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           MLV+S+ Y+PG G+KQ AWALHSA++GAV+AP+CF+GGP+L+RAA YTAGIVGGLSTVA 
Sbjct: 168 MLVRSIPYQPGVGSKQAAWALHSAVIGAVIAPMCFLGGPLLLRAAMYTAGIVGGLSTVAV 227

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPS+KFL MGGPLAIG G VFA+SI
Sbjct: 228 CAPSEKFLNMGGPLAIGFGAVFAASI 253

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170037323|ref|XP_001846508.1| growth hormone-inducible transmembrane protein [Culex quinquefasciatus] gi|167880417|gb|EDS43800.1| growth hormone-inducible transmembrane protein [Culex quinquefasciatus]

 Score =  216 bits (549), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 103/145 (71%), Positives = 123/145 (84%)

Query: 2   WPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGM 61
           WP++VR+R+  TY YF GS+ +SAASA AVF SPT+L LVS N  +++ G+ A+++GSGM
Sbjct: 107 WPEFVRERVRDTYLYFAGSLGISAASAVAVFRSPTLLNLVSRNGWMSILGTFAVMIGSGM 166

Query: 62  LVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAAC 121
           L QSL Y PGFGAKQ AW  HSA++GAV+APICFIGGP+L RAAWYTAG+VGGLSTVA C
Sbjct: 167 LAQSLPYSPGFGAKQAAWIAHSAILGAVIAPICFIGGPILTRAAWYTAGVVGGLSTVAVC 226

Query: 122 APSDKFLTMGGPLAIGLGVVFASSI 146
           APSDKFL MGGPLAIGLGVVFASS+
Sbjct: 227 APSDKFLYMGGPLAIGLGVVFASSM 251

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312379067|gb|EFR25467.1| hypothetical protein AND_09168 [Anopheles darlingi]

 Score =  215 bits (547), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 124/146 (84%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           LWP+YV+ RI  TY YFGGS+ +SAASA AVF SP ML LVS N  +++ G+ AL++GSG
Sbjct: 107 LWPEYVKQRIQDTYLYFGGSLAISAASAMAVFRSPRMLSLVSRNGWMSILGTFALMIGSG 166

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           M+ QS+ Y PG G+KQ+AWA+HSA++GAV+AP+CF+GG +L RAAWYTAG+VGGLSTVA 
Sbjct: 167 MVAQSIPYSPGLGSKQVAWAVHSAILGAVIAPMCFVGGAILTRAAWYTAGVVGGLSTVAV 226

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPSDKFL MGGPLAIGLGVVFASS+
Sbjct: 227 CAPSDKFLYMGGPLAIGLGVVFASSL 252

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442754527|gb|JAA69423.1| Putative growth hormone-induced protein [Ixodes ricinus]

 Score =  208 bits (529), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 101/146 (69%), Positives = 123/146 (84%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           LWP+YVR RI  TY+YFGGSIV++AASA+AV  +P ML LV  NS LA+  S A ++GSG
Sbjct: 107 LWPEYVRQRIRDTYSYFGGSIVITAASAFAVSRNPAMLNLVMRNSWLAIGASFAAMIGSG 166

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
           MLV+SL Y+ G GAKQ AW LHS+++GA+VAP+C +GGP+L+RAAWYTAG+V GLSTVAA
Sbjct: 167 MLVRSLPYERGLGAKQAAWMLHSSVMGALVAPLCLLGGPILVRAAWYTAGVVAGLSTVAA 226

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPS+KFL MGGPLAIGLG VFASS+
Sbjct: 227 CAPSEKFLNMGGPLAIGLGFVFASSL 252

Source: Ixodes ricinus

Species: Ixodes ricinus

Genus: Ixodes

Family: Ixodidae

Order: Ixodida

Class: Arachnida

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194762624|ref|XP_001963434.1| GF20290 [Drosophila ananassae] gi|190629093|gb|EDV44510.1| GF20290 [Drosophila ananassae]

 Score =  204 bits (520), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 123/146 (84%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WP+YVRDRI STYA+FGGS VL+AA+A AVF SP +L L S   +LA   S+AL++GSG
Sbjct: 111 MWPEYVRDRIQSTYAFFGGSCVLTAAAAAAVFRSPRLLELTSRGGILATIASLALVIGSG 170

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            + +S+EY+PG G K +AWA+H A++GAV+APICF+GGP+L RAA YT GIVGGLST+AA
Sbjct: 171 AVARSIEYQPGLGPKHLAWAVHCAILGAVIAPICFMGGPILTRAALYTGGIVGGLSTIAA 230

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPSDKFL MGGPLAIGLGVVFASS+
Sbjct: 231 CAPSDKFLAMGGPLAIGLGVVFASSL 256

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399125|ref|XP_002058171.1| GJ15635 [Drosophila virilis] gi|194150595|gb|EDW66279.1| GJ15635 [Drosophila virilis]

 Score =  204 bits (519), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 122/146 (83%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV++RI S+YA+FGGS +L+AASA AVF SP +L L S   +L  F S+AL++GSG
Sbjct: 109 MWPQYVKERIQSSYAFFGGSCILTAASAAAVFRSPRLLSLASRGGLLWTFASLALVVGSG 168

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            L +S++Y+PG G K +AWALH A++G V+AP+CF+GGP++ RAA YT GIVGGLST+AA
Sbjct: 169 ALTRSMQYEPGLGPKHLAWALHCAILGGVIAPLCFLGGPIMTRAALYTGGIVGGLSTIAA 228

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAP+DKFL MGGPLAIGLGVVFASS+
Sbjct: 229 CAPNDKFLYMGGPLAIGLGVVFASSL 254

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195432160|ref|XP_002064094.1| GK19984 [Drosophila willistoni] gi|194160179|gb|EDW75080.1| GK19984 [Drosophila willistoni]

 Score =  201 bits (510), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 96/146 (65%), Positives = 118/146 (80%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STY +FGGS +L+AASA AVF SP +L L S    L    S+AL++GSG
Sbjct: 107 MWPQYVKDRIQSTYGFFGGSCILTAASAAAVFRSPRLLALASRGGFLWSIASLALVIGSG 166

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            + +S+EY+PG G K +AWALH A++G V+AP+CFIGGP+L RAA YT GIVGGLST+A 
Sbjct: 167 AVARSIEYQPGLGPKHLAWALHCAILGGVIAPLCFIGGPILTRAALYTGGIVGGLSTIAV 226

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAP+DKFL MGGPLAIGLGVVFASS+
Sbjct: 227 CAPNDKFLYMGGPLAIGLGVVFASSL 252

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|24641180|ref|NP_572681.1| CG2076 [Drosophila melanogaster] gi|7292595|gb|AAF47994.1| CG2076 [Drosophila melanogaster] gi|33589294|gb|AAQ22414.1| RH72958p [Drosophila melanogaster] gi|220951088|gb|ACL88087.1| CG2076-PA [synthetic construct] gi|220959672|gb|ACL92379.1| CG2076-PA [synthetic construct]

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/146 (67%), Positives = 122/146 (83%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQ+VRDRI STYA+FGGS VL+AA+A A F S  +L L S   +LA   S+AL++GSG
Sbjct: 112 MWPQFVRDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILATIASLALVIGSG 171

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            + +S+EY+PG GAK +AWA+H A++GAV+APICF+GGP+L RAA YT GIVGGLST+AA
Sbjct: 172 AVARSIEYQPGLGAKHLAWAVHCAILGAVIAPICFMGGPILTRAALYTGGIVGGLSTIAA 231

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPSDKFL MGGPLAIGLGVVFASS+
Sbjct: 232 CAPSDKFLYMGGPLAIGLGVVFASSL 257

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195479516|ref|XP_002100916.1| GE15904 [Drosophila yakuba] gi|194188440|gb|EDX02024.1| GE15904 [Drosophila yakuba]

 Score =  200 bits (509), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/146 (67%), Positives = 122/146 (83%)

Query: 1   LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
           +WPQYV+DRI STYA+FGGS VL+AA+A A F S  +L L S   +LA   S+AL++GSG
Sbjct: 112 MWPQYVKDRIQSTYAFFGGSCVLTAAAAAATFRSHRLLELASRGGILATIASLALVIGSG 171

Query: 61  MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
            + +S+EY+PG GAK +AWA+H A++GAV+APICF+GGP+L RAA YT GIVGGLST+AA
Sbjct: 172 AVARSIEYQPGLGAKHLAWAVHCAILGAVIAPICFVGGPILTRAALYTGGIVGGLSTIAA 231

Query: 121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
           CAPSDKFL MGGPLAIGLGVVFASS+
Sbjct: 232 CAPSDKFLYMGGPLAIGLGVVFASSL 257

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	443
RGD|1359301	346	Ghitm "growth hormone inducibl	0.329	0.421	0.582	3.7e-54
UNIPROTKB|Q3SZK3	345	GHITM "Uncharacterized protein	0.329	0.423	0.582	6.1e-54
ZFIN|ZDB-GENE-040426-1537	341	ghitm "growth hormone inducibl	0.329	0.428	0.547	9.9e-54
MGI|MGI:1913342	346	Ghitm "growth hormone inducibl	0.329	0.421	0.575	1.6e-53
UNIPROTKB|F1SEQ3	345	GHITM "Uncharacterized protein	0.329	0.423	0.582	2e-53
UNIPROTKB|E2QUJ8	345	GHITM "Uncharacterized protein	0.329	0.423	0.582	2.6e-53
UNIPROTKB|Q9H3K2	345	GHITM "Growth hormone-inducibl	0.329	0.423	0.568	1.1e-52
WB|WBGene00019664	342	K11H12.8 [Caenorhabditis elega	0.327	0.423	0.554	3.7e-48
UNIPROTKB|E1BYC1	321	GHITM "Uncharacterized protein	0.151	0.208	0.731	5.1e-34
UNIPROTKB|E1BYC0	356	GHITM "Uncharacterized protein	0.151	0.188	0.731	2e-33

RGD|1359301 Ghitm "growth hormone inducible transmembrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 459 (166.6 bits), Expect = 3.7e-54, Sum P(2) = 3.7e-54
 Identities = 85/146 (58%), Positives = 111/146 (76%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA A+  SP ++  +   S + +  + A ++G+G
Sbjct:   116 IWPQYVKDRIHSTYMYLAGSIGLTALSALALARSPALMNFMMTGSWMTIGATFAAMIGAG 175

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             MLVQS+ Y+   G K +AW LHS ++GAVVAP+  +GGP+L+RAAWYTAGIVGGLSTVA 
Sbjct:   176 MLVQSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAM 235

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLG+VFASS+
Sbjct:   236 CAPSEKFLNMGAPLGVGLGLVFASSL 261

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q3SZK3 GHITM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 458 (166.3 bits), Expect = 6.1e-54, Sum P(2) = 6.1e-54
 Identities = 85/146 (58%), Positives = 110/146 (75%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA AV  +P ++  +   S + +  + A ++G+G
Sbjct:   115 IWPQYVKDRIHSTYMYLAGSIGLTALSAVAVSRTPALMNFMMRGSWITIGATFAAMIGAG 174

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             MLVQS+ Y+   G K +AW LHS ++GAVVAP+  +GGP+L+RAAWYTAGIVGGLSTVA 
Sbjct:   175 MLVQSISYEQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAM 234

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLGVVF SS+
Sbjct:   235 CAPSEKFLNMGAPLGVGLGVVFVSSL 260

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

ZFIN|ZDB-GENE-040426-1537 ghitm "growth hormone inducible transmembrane protein" [Danio rerio (taxid:7955)]

 Score = 442 (160.7 bits), Expect = 9.9e-54, Sum P(2) = 9.9e-54
 Identities = 80/146 (54%), Positives = 114/146 (78%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYVRDRI STY YF GS+ L+A SA A+  +P ++ ++  NS LA+  + A L+G+G
Sbjct:   111 IWPQYVRDRIHSTYLYFAGSVGLTALSAVAISRTPVLMGIMMSNSWLAIGATFAALIGAG 170

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             +LV+S+ Y+    AK ++WAL++ + GAVVAP+  +GGP+++RA W TAG+VGGLSTVA 
Sbjct:   171 VLVRSVSYEHSPVAKHLSWALYAGVFGAVVAPLTLLGGPLMLRAVWCTAGVVGGLSTVAV 230

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS++FL MGGPLA+GLG+V AS++
Sbjct:   231 CAPSERFLNMGGPLAVGLGLVLASTL 256

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1913342 Ghitm "growth hormone inducible transmembrane protein" [Mus musculus (taxid:10090)]

 Score = 453 (164.5 bits), Expect = 1.6e-53, Sum P(2) = 1.6e-53
 Identities = 84/146 (57%), Positives = 110/146 (75%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA AV  +P ++  +   S + +  + A ++G+G
Sbjct:   116 IWPQYVKDRIHSTYMYLAGSIGLTALSALAVARTPALMNFMMTGSWVTIGATFAAMIGAG 175

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             MLV S+ Y+   G K +AW LHS ++GAVVAP+  +GGP+L+RAAWYTAGIVGGLSTVA 
Sbjct:   176 MLVHSISYEQSPGPKHLAWMLHSGVMGAVVAPLTILGGPLLLRAAWYTAGIVGGLSTVAM 235

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLG+VFASS+
Sbjct:   236 CAPSEKFLNMGAPLGVGLGLVFASSL 261

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1SEQ3 GHITM "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 453 (164.5 bits), Expect = 2.0e-53, Sum P(2) = 2.0e-53
 Identities = 85/146 (58%), Positives = 109/146 (74%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA AV  +P ++  +   S + +  + A ++G+G
Sbjct:   115 IWPQYVKDRIHSTYMYLAGSIGLTAMSALAVSRTPALMNFMMKGSWVTIGATFAAMIGAG 174

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             MLVQS+ Y    G K +AW LHS ++GAVVAP+  +GGP+LIRAAWYTAGIVGGLSTVA 
Sbjct:   175 MLVQSISYDRSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAM 234

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLG+VF SS+
Sbjct:   235 CAPSEKFLNMGAPLGVGLGLVFVSSL 260

GO:0005739 "mitochondrion" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E2QUJ8 GHITM "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 452 (164.2 bits), Expect = 2.6e-53, Sum P(2) = 2.6e-53
 Identities = 85/146 (58%), Positives = 109/146 (74%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA AV  +P +L  +   S + +  + A ++G+G
Sbjct:   115 IWPQYVKDRIHSTYMYLAGSIGLTALSALAVSRTPVLLNFMMRGSWVTIGATFAAMIGAG 174

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             +LVQS+ Y    G K +AW LHS ++GAVVAP+  +GGP+LIRAAWYTAGIVGGLSTVA 
Sbjct:   175 ILVQSISYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAM 234

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLG+VF SS+
Sbjct:   235 CAPSEKFLNMGAPLGVGLGLVFVSSL 260

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q9H3K2 GHITM "Growth hormone-inducible transmembrane protein" [Homo sapiens (taxid:9606)]

 Score = 445 (161.7 bits), Expect = 1.1e-52, Sum P(2) = 1.1e-52
 Identities = 83/146 (56%), Positives = 109/146 (74%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WPQYV+DRI STY Y  GSI L+A SA A+  +P ++  +   S + +  + A ++G+G
Sbjct:   115 IWPQYVKDRIHSTYMYLAGSIGLTALSAIAISRTPVLMNFMMRGSWVTIGVTFAAMVGAG 174

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             MLV+S+ Y    G K +AW LHS ++GAVVAP+  +GGP+LIRAAWYTAGIVGGLSTVA 
Sbjct:   175 MLVRSIPYDQSPGPKHLAWLLHSGVMGAVVAPLTILGGPLLIRAAWYTAGIVGGLSTVAM 234

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
             CAPS+KFL MG PL +GLG+VF SS+
Sbjct:   235 CAPSEKFLNMGAPLGVGLGLVFVSSL 260

GO:0006915 "apoptotic process" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=NAS

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

WB|WBGene00019664 K11H12.8 [Caenorhabditis elegans (taxid:6239)]

 Score = 443 (161.0 bits), Expect = 3.7e-48, Sum P(2) = 3.7e-48
 Identities = 81/146 (55%), Positives = 110/146 (75%)

Query:     1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSG 60
             +WP YVR+RI++TYAY  GS+ L+A S  A   S  ++RL +G  M+++FG++A ++ SG
Sbjct:   104 IWPSYVRERISTTYAYLAGSLALTAVSGVAASRSAAIMRLTAGGGMMSLFGTMAAMIASG 163

Query:    61 MLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAA 120
             ML +S++Y+    AK +AWALH  ++GAV AP+CF+ GPVL RAAWYTAGIVGGLS  A 
Sbjct:   164 MLARSIDYESTV-AKHLAWALHCGVLGAVFAPLCFMAGPVLTRAAWYTAGIVGGLSATAI 222

Query:   121 CAPSDKFLTMGGPLAIGLGVVFASSI 146
              APS+KFL M GPLA+G GVVF ++I
Sbjct:   223 TAPSEKFLMMSGPLAMGFGVVFVANI 248

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BYC1 GHITM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 5.1e-34, Sum P(2) = 5.1e-34
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query:    80 ALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLG 139
             A+ + ++GAVVAP+ F+GGP+LIRAAWYTAGIVGGLSTVA CAPS+KFL MGGPL IG G
Sbjct:   169 AIFAGVMGAVVAPLAFLGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGGPLGIGFG 228

Query:   140 VVFASSI 146
              V  SSI
Sbjct:   229 FVLVSSI 235

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|E1BYC0 GHITM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 261 (96.9 bits), Expect = 2.0e-33, Sum P(2) = 2.0e-33
 Identities = 49/67 (73%), Positives = 57/67 (85%)

Query:    80 ALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLG 139
             A+ + ++GAVVAP+ F+GGP+LIRAAWYTAGIVGGLSTVA CAPS+KFL MGGPL IG G
Sbjct:   204 AIFAGVMGAVVAPLAFLGGPLLIRAAWYTAGIVGGLSTVAMCAPSEKFLNMGGPLGIGFG 263

Query:   140 VVFASSI 146
              V  SSI
Sbjct:   264 FVLVSSI 270

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	443
cd10431	264	cd10431, GHITM, Growth-hormone inducible transmemb	2e-67
cd10431	264	cd10431, GHITM, Growth-hormone inducible transmemb	7e-45
pfam01027	205	pfam01027, Bax1-I, Inhibitor of apoptosis-promotin	6e-19
smart00960	88	smart00960, Robl_LC7, Roadblock/LC7 domain	5e-17
pfam03259	91	pfam03259, Robl_LC7, Roadblock/LC7 domain	9e-17
cd06181	202	cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like	2e-16
cd06181	202	cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like	1e-10
cd10432	211	cd10432, BI-1-like_bacterial, Bacterial BAX inhibi	3e-08
pfam01027	205	pfam01027, Bax1-I, Inhibitor of apoptosis-promotin	8e-08
cd10431	264	cd10431, GHITM, Growth-hormone inducible transmemb	4e-05
cd10430	213	cd10430, BI-1, BAX inhibitor (BI)-1	4e-05
cd10429	233	cd10429, GAAP_like, Golgi antiapoptotic protein	0.001

>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein

 Score =  215 bits (550), Expect = 2e-67
 Identities = 95/145 (65%), Positives = 117/145 (80%)

Query: 2   WPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGM 61
           WPQYVRDRI STY YFGGS+ L+A +A A+  SP ++RL++    LA+  ++A ++GSGM
Sbjct: 36  WPQYVRDRIHSTYMYFGGSLGLTALAAVALSRSPALMRLMAAGPWLAIGATLAAMIGSGM 95

Query: 62  LVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAAC 121
           LV+S  Y    GAK +AW  HS + GAV+AP+CF+GGP+LIRAA YTAGIVGGLSTVAAC
Sbjct: 96  LVRSYTYPENPGAKHLAWLGHSGVQGAVLAPLCFLGGPLLIRAALYTAGIVGGLSTVAAC 155

Query: 122 APSDKFLTMGGPLAIGLGVVFASSI 146
           APS+KFL MGGPLAIGLGVVFASS+
Sbjct: 156 APSEKFLYMGGPLAIGLGVVFASSL 180

GHITM appears to be ubiquitiously expressed in mammalian cells and expression has also been observed in various cancer cell lines. A cytoprotective function has been suggested. It is closely related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect. Length = 264

>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein

 Score =  156 bits (397), Expect = 7e-45
 Identities = 88/186 (47%), Positives = 106/186 (56%), Gaps = 30/186 (16%)

Query: 260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAW 319
           L +  ++A ++GSGMLV+S  Y    GAK +AW  HS + GAV+AP+CF+GGP+LIRAA 
Sbjct: 81  LAIGATLAAMIGSGMLVRSYTYPENPGAKHLAWLGHSGVQGAVLAPLCFLGGPLLIRAAL 140

Query: 320 YTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLV 379
           YTAGIVG              L +G     GLG+                          
Sbjct: 141 YTAGIVGGLSTVAACAPSEKFLYMGGPLAIGLGVVFASS--------------------- 179

Query: 380 NEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPY--VT 437
                  L S FLPPTTALGAGLYS++LYGGL+LF GFLLYDTQKII RAE  P Y    
Sbjct: 180 -------LGSMFLPPTTALGAGLYSVSLYGGLVLFGGFLLYDTQKIIKRAETHPLYGVRK 232

Query: 438 YDPVNA 443
           YDP+NA
Sbjct: 233 YDPINA 238

GHITM appears to be ubiquitiously expressed in mammalian cells and expression has also been observed in various cancer cell lines. A cytoprotective function has been suggested. It is closely related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect. Length = 264

>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1

 Score = 84.5 bits (210), Expect = 6e-19
 Identities = 39/142 (27%), Positives = 66/142 (46%), Gaps = 4/142 (2%)

Query: 7   RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSL 66
           R  +   Y      ++L+AA AY V ++P +L+L+     + +   +ALL+   +L   +
Sbjct: 1   RKFLRKVYGLLALGLLLTAAVAYLVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRI 60

Query: 67  EYKPGFGAKQIAWALHSALVGAVVAPIC--FIGGPVLIRAAWYTAGIVGGLSTVAACAPS 124
           + K    A      L + L G  + PI   +  G ++++A   TA I GGLS  A     
Sbjct: 61  KKKSS-SAALALLFLFTLLEGLTLGPILLVYTAGSIILQAFLGTAAIFGGLSLYALTTKR 119

Query: 125 DKFLTMGGPLAIGLGVVFASSI 146
           D    +GG L  GL  +  +S+
Sbjct: 120 D-LSFLGGFLFAGLIGLIVASL 140

Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. Length = 205

>gnl|CDD|214939 smart00960, Robl_LC7, Roadblock/LC7 domain

 Score = 75.7 bits (187), Expect = 5e-17
 Identities = 25/88 (28%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 160 IEETLKRIQSHRGVAGVIVINGDGIPIKTT-LDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           IEE L  +    GV G +V++ DG+ + ++ L +    + A L + L+  A+   RE+  
Sbjct: 1   IEELLDLLARVPGVRGALVVSRDGLLLASSGLSDDDAERLAALAAGLLSLAERAARELGE 60

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILII 246
             +L  LR+  +K E++I P    +L +
Sbjct: 61  -GELRQLRIEGEKGEVLITPAGDALLAV 87

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 88

>gnl|CDD|217460 pfam03259, Robl_LC7, Roadblock/LC7 domain

 Score = 75.0 bits (185), Expect = 9e-17
 Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 2/88 (2%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQT-TVQYAGLVSQLVDKAKSVVREID 217
             E  L+ +Q   GV G +V++ DG+ + +T  +     + A L S L+  AK++ R++ 
Sbjct: 1   LDELLLELLQRVPGVRGALVVSKDGLVLASTGLDDDDADRLAALASGLLSAAKALARDLG 60

Query: 218 ATNDLTFLRLRSKKNEIMIAPDKQFILI 245
              +L  L +  KK E+ + P  +  L+
Sbjct: 61  -GGELRQLLIEGKKGELYLTPAGEGALL 87

This family includes proteins that are about 100 amino acids long and have been shown to be related. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions. This family also includes Golgi-associated MP1 adapter protein and MglB from Myxococcus xanthus, a protein involved in gliding motility. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role. Length = 91

>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family

 Score = 77.5 bits (191), Expect = 2e-16
 Identities = 40/145 (27%), Positives = 61/145 (42%), Gaps = 13/145 (8%)

Query: 5   YVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQ 64
             +D +   Y      ++L+AA+A A     T+       S   M      L+ S + + 
Sbjct: 1   STKDFLRKVYMILALQLLLTAATATAF----TVCDPGWYWSPALMG-----LLTSMLALM 51

Query: 65  SLEYKPG--FGAKQIAWALHSALVGAVVAPICFIGGP-VLIRAAWYTAGIVGGLSTVAAC 121
           +             I     + L+G VV P+ F  GP +L+RA   TA +  GL+  A  
Sbjct: 52  ATAAMIRAKMPVNLILLFGFTGLMGYVVGPLLFFYGPTILLRALGGTALVFFGLTVYALQ 111

Query: 122 APSDKFLTMGGPLAIGLGVVFASSI 146
           A    FL +GGPL  GLG +  S +
Sbjct: 112 A-RKDFLFLGGPLMAGLGFLLLSFL 135

Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. This superfamily also contains the lifeguard(LFG)-like proteins and other subfamilies which appear to be related by common descent and also function as inhibitors of apoptosis. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes. Length = 202

>gnl|CDD|198409 cd06181, BI-1-like, BAX inhibitor (BI)-1/YccA-like protein family

 Score = 60.5 bits (147), Expect = 1e-10
 Identities = 45/166 (27%), Positives = 60/166 (36%), Gaps = 49/166 (29%)

Query: 284 GFGAKQIAWALHSALVGAVVAPICFIGGP-VLIRAAWYTAGIVG-----AFKIGQGAVAG 337
                 I     + L+G VV P+ F  GP +L+RA   TA +       A +  +  +  
Sbjct: 60  KMPVNLILLFGFTGLMGYVVGPLLFFYGPTILLRALGGTALVFFGLTVYALQARKDFLFL 119

Query: 338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTA 397
           G  L  G                                      L  +L S FL  T  
Sbjct: 120 GGPLMAG--------------------------------------LGFLLLS-FLLNTFF 140

Query: 398 LGAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTPPYVTYDPVNA 443
               L+ +    GL+LF GFLLYDTQ II +AE  P     D +NA
Sbjct: 141 YSPWLHLVAAAVGLVLFCGFLLYDTQLIIHKAEVGP----EDYINA 182

Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. This superfamily also contains the lifeguard(LFG)-like proteins and other subfamilies which appear to be related by common descent and also function as inhibitors of apoptosis. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes. Length = 202

>gnl|CDD|198414 cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins

 Score = 53.3 bits (129), Expect = 3e-08
 Identities = 31/136 (22%), Positives = 54/136 (39%), Gaps = 7/136 (5%)

Query: 13  TYAYFGGSIVLSAASAYAVFTSP-TMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPG 71
            Y      ++L+A  AY   ++P  +L   S    + +   +AL+ G    +     K  
Sbjct: 9   VYGLMAAGLLLTAVGAYVGASTPALLLIAGSPLMWVLLIAELALVFGLSFRIN----KMS 64

Query: 72  FGAKQIAWALHSALVGAVVAPI-CFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTM 130
                  +   +AL G  ++PI     G  + +A + TA   GGLS        D    +
Sbjct: 65  VATALPLFFAFAALTGLTLSPILLVYTGASIAQAFFTTAATFGGLSLYGYTTKKD-LSFL 123

Query: 131 GGPLAIGLGVVFASSI 146
           G  L +GL  +  +S+
Sbjct: 124 GSFLFMGLIGLIIASL 139

This family is comprised of bacterial relatives of the mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. In plants, BI-1 like proteins play a role in pathogen resistance. A characterized prokaryotic member, Escherichia coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes. Length = 211

>gnl|CDD|216251 pfam01027, Bax1-I, Inhibitor of apoptosis-promoting Bax1

 Score = 52.2 bits (126), Expect = 8e-08
 Identities = 44/195 (22%), Positives = 67/195 (34%), Gaps = 36/195 (18%)

Query: 244 LIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVV 303
           L+++T  LL L   L          L+    L+ S   K    A      L + L G  +
Sbjct: 24  LVLSTPALLQLLFPLFWVGLLLPLALLIFVFLLFSRIKKKSSSAALALLFLFTLLEGLTL 83

Query: 304 APIC--FIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQE 361
            PI   +  G ++++A   TA I G   +         +  LG   + GL          
Sbjct: 84  GPILLVYTAGSIILQAFLGTAAIFGGLSLY-ALTTKRDLSFLGGFLFAGLIG-------- 134

Query: 362 VQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGFLLYD 421
                                +   L + FLP      + L       G+L+FSG +LYD
Sbjct: 135 --------------------LIVASLVNIFLP-----SSALSLAISAIGVLIFSGLILYD 169

Query: 422 TQKIITRAERTPPYV 436
           TQ+I    E    Y+
Sbjct: 170 TQRIKEGGETDDYYI 184

Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak). Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress. BI-1 appears to exert its effect through an interaction with calmodulin. Length = 205

>gnl|CDD|198413 cd10431, GHITM, Growth-hormone inducible transmembrane protein

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 22/31 (70%), Positives = 25/31 (80%)

Query: 331 GQGAVAGGAVLGLGALCYYGLGLSSERGAQE 361
           G+  +AG A +GLGALCYYGLGLSSE GA E
Sbjct: 1   GRALLAGAAAVGLGALCYYGLGLSSEIGAIE 31

GHITM appears to be ubiquitiously expressed in mammalian cells and expression has also been observed in various cancer cell lines. A cytoprotective function has been suggested. It is closely related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect. Length = 264

>gnl|CDD|198412 cd10430, BI-1, BAX inhibitor (BI)-1

 Score = 44.1 bits (105), Expect = 4e-05
 Identities = 17/30 (56%), Positives = 22/30 (73%)

Query: 402 LYSITLYGGLLLFSGFLLYDTQKIITRAER 431
           L+   LY GLL+F GF+L+DTQ II +AE 
Sbjct: 152 LFQAELYLGLLVFCGFVLFDTQMIIEKAEN 181

Mammalian members of the BAX inhibitor (BI)-1 like family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. Length = 213

>gnl|CDD|198411 cd10429, GAAP_like, Golgi antiapoptotic protein

 Score = 40.3 bits (95), Expect = 0.001
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 6/59 (10%)

Query: 374 DWDYLVNEELWIMLRSAFL---PPTTALGAGLYSITLYGGLLLFSGFLLYDTQKIITRA 429
            +  L+   LW ++  A +    P +     +Y+     G LLFSG+++YDTQ I+ R 
Sbjct: 147 SFGALLFILLWALILLALIFQFFPYSPTFELVYAG---LGALLFSGYIVYDTQLIMKRL 202

GAAP (or transmembrane BAX inhibitor motif containing 4) is a regulator of apoptosis that is related to the BAX inhibitor (BI)-1 like family of small transmembrane proteins, which have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well-characterized oncogene, or by inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Human GAAP has been linked to the modulation of intracellular fluxes of Ca(2+), by suppressing influx from the extracellular medium and reducing release from intracellular stores. A viral homolog (vaccinia virus vGAAP) acts similar to its human counterpart in inhibiting apoptosis. Length = 233

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	443
KOG1630|consensus	336		99.97
KOG4115|consensus	97		99.97
KOG1629|consensus	235		99.95
KOG1630|consensus	336		99.95
PRK10447	219	HflBKC-binding inner membrane protein; Provisional	99.91
COG0670	233	Integral membrane protein, interacts with FtsH [Ge	99.9
KOG1629|consensus	235		99.89
PRK10447	219	HflBKC-binding inner membrane protein; Provisional	99.84
cd06181	212	BI-1-like BAX inhibitor (BI)-1 like protein family	99.82
COG0670	233	Integral membrane protein, interacts with FtsH [Ge	99.8
PF01027	205	Bax1-I: Inhibitor of apoptosis-promoting Bax1; Int	99.72
cd06181	212	BI-1-like BAX inhibitor (BI)-1 like protein family	99.71
PF01027	205	Bax1-I: Inhibitor of apoptosis-promoting Bax1; Int	99.6
PF03259	91	Robl_LC7: Roadblock/LC7 domain; InterPro: IPR00494	99.32
KOG2322|consensus	237		99.3
KOG2322|consensus	237		99.06
COG2018	119	Uncharacterized distant relative of homeotic prote	96.92
PF12811	274	BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539	95.99

>KOG1630|consensus

Probab=99.97  E-value=1.9e-32  Score=260.91  Aligned_cols=152  Identities=59%  Similarity=1.045  Sum_probs=134.9

Q ss_pred             hhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhhccCccHHHHHHHHHHHHHHHHhhcchhhhhhh
Q psy2982         260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGAFKIGQGAVAGGA  339 (443)
Q Consensus       260 ~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~~~  339 (443)
                      ++.++.+++|+++++..|+++|++.+++||++|.+|++.+|+.++|+|+.++|++.+|+++|++|+|++|.    ++-|+
T Consensus       152 va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~lHc~vlGAV~APlc~lgGPiLtrAa~YTaGIVGgLSt----vA~cA  227 (336)
T KOG1630|consen  152 VAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWLLHCGVLGAVVAPLCFLGGPILTRAAWYTAGIVGGLST----VAACA  227 (336)
T ss_pred             HHHHHHHHHHHhcchhhhcccCCCCccHHHHHHHHHHHHHHHHHhhHHhcccHHHHHHHHHHccccchhhh----hhhcC
Confidence            46778999999999999999999999999999999999999999999999999999999999999999998    44332


Q ss_pred             ----hhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHH
Q psy2982         340 ----VLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFS  415 (443)
Q Consensus       340 ----~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~  415 (443)
                          |+.||+++.+|++                            ++++.+++++|+||++++|+.+.++++|+|+++||
T Consensus       228 PSeKFL~MggPLaiGlG----------------------------vVFvssl~sm~LPPtta~GA~LaSmslYGGLiLFS  279 (336)
T KOG1630|consen  228 PSEKFLNMGGPLAIGLG----------------------------VVFVSSLGSMFLPPTTALGAGLASMSLYGGLILFS  279 (336)
T ss_pred             cHHHHhhcCCCceeeee----------------------------eEehhhhhhhhcCCchhhhhhhHHHHHhccHHHHH
Confidence                5555555554442                            34688999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhhhhhCCCC--cc-CCCCCC
Q psy2982         416 GFLLYDTQKIITRAERTPPY--VT-YDPVNA  443 (443)
Q Consensus       416 g~ilyDTQ~Ii~~~~~~~~~--~~-~dpi~~  443 (443)
                      ||+||||||++|++|.+|.|  .+ |||||+
T Consensus       280 ~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~  310 (336)
T KOG1630|consen  280 GFLLYDTQRVVKSAEKYPQYSEFPNYDPINA  310 (336)
T ss_pred             HHHHHhHHHHHHHHHhCcchhccCCCCchHH
Confidence            99999999999999999975  34 999984

>KOG4115|consensus

Probab=99.97  E-value=1.1e-31  Score=222.13  Aligned_cols=94  Identities=63%  Similarity=0.995  Sum_probs=92.8

Q ss_pred             hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI  236 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I  236 (443)
                      ++++||+++|++++|||.|++|.|++|+|+||++|++.+++||+++.+|+.+||++|||+||+|||+|||+||||||+||
T Consensus         2 ~~~vEe~~~R~qs~~gV~giiv~d~~GvpikTt~d~~~t~~ya~~l~~L~~kars~VrdlDpsn~LtflRlRTkk~Eimv   81 (97)
T KOG4115|consen    2 SAEVEETLKRLQSYKGVTGIIVVDNAGVPIKTTLDNTTTQQYAALLHPLVEKARSVVRDLDPSNDLTFLRLRTKKHEIMV   81 (97)
T ss_pred             cHHHHHHHHHHhccCCceeEEEECCCCcEeEeccCchHHHHHHHHHHHHHHHHHHHHHccCCcCceEEEEEeeccceEEE
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEeecch
Q psy2982         237 APDKQFILIITTNE  250 (443)
Q Consensus       237 a~~~~~~l~Vvqn~  250 (443)
                      +||++|+++|+||+
T Consensus        82 ap~~~~~iiVVQ~~   95 (97)
T KOG4115|consen   82 APDEDFTIIVVQNP   95 (97)
T ss_pred             cCCCCEEEEEEecC
Confidence            99999999999997

>KOG1629|consensus

Probab=99.95  E-value=5.9e-27  Score=216.44  Aligned_cols=195  Identities=25%  Similarity=0.270  Sum_probs=172.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH
Q psy2982           3 PQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALH   82 (443)
Q Consensus         3 p~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~f   82 (443)
                      .|+||+|+||||..++.++..||.+||.++...       ..+.+..++.+++++++.+    .++  +...|..++++|
T Consensus        20 sP~vq~HLkkvY~tl~~~~~asA~GAylhM~~n-------igG~lsalg~l~~miwl~~----~py--~hk~rl~lL~~f   86 (235)
T KOG1629|consen   20 SPAVQNHLKKVYLTLALALFASAAGAYLHMVWN-------IGGLLSALGSLGLMIWLMF----TPY--EHKTRLGLLFLF   86 (235)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHhhhHHHhhhh-------ccchHHHHHHHHHHHHHhC----CCC--ccchhHHHHHHH
Confidence            589999999999999999999999999977533       3456788899999999876    222  334599999999


Q ss_pred             HHHhhhhhhhhh----ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchH
Q psy2982          83 SALVGAVVAPIC----FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMST  158 (443)
Q Consensus        83 s~l~G~tL~pi~----~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~  158 (443)
                      +++.|.++||++    ..+|+++.+||.+||.+|.|+|+.|+.++|++|+|+||.|.+|+..+...++.|.|+    .|.
T Consensus        87 a~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSasAmlArrreYLylGg~L~s~~s~l~wl~l~n~~f----gS~  162 (235)
T KOG1629|consen   87 AFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSASAMLARRREYLYLGGLLSSGLSLLLWLSLANSFF----GSI  162 (235)
T ss_pred             HHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHh----hHH
Confidence            999999999999    368999999999999999999999999999999999999999999999999999995    565


Q ss_pred             HHHHHHHHHhhccc---eeEEEEEecCCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCC
Q psy2982         159 EIEETLKRIQSHRG---VAGVIVINGDGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDA  218 (443)
Q Consensus       159 ~ve~~l~rI~~~~g---V~GvvIf~~~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp  218 (443)
                      .+.    +.+.|-|   .+|++++|+|-|++|..-+|+|.+||+ +++.|++...++.+..+-.
T Consensus       163 ~v~----~~qLY~Gllvfvg~ivvdTQ~IiEKah~GdmDyv~Hsl~lf~dfvsvF~riLiIl~~  222 (235)
T KOG1629|consen  163 WVF----KFQLYVGLLVFVGFIVVDTQEIIEKAHHGDMDYVQHSLDLFTDFVSVFRRILIILAM  222 (235)
T ss_pred             HHH----HHHHHHHHHHhheeEEeeHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            444    3477777   789999999999999999999999999 9999999999998877643

>KOG1630|consensus

Probab=99.95  E-value=8.2e-28  Score=229.26  Aligned_cols=217  Identities=47%  Similarity=0.834  Sum_probs=188.0

Q ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHH
Q psy2982           1 LWPQYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWA   80 (443)
Q Consensus         1 ~wp~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~   80 (443)
                      +||+|||+++..||.+++.++.+||+.|...++++.+++++..++|+..+++++++++..+..|+++++++++.|++.|.
T Consensus       106 iWPqyVrdRI~sTYay~~gS~~lTA~savA~~rs~~lm~l~~rgg~va~~~tla~mi~sG~larsi~Yq~g~gaKhLAW~  185 (336)
T KOG1630|consen  106 IWPQYVRDRIHSTYAYLAGSCGLTAASAVAISRSPALMNLMMRGGWVAIGVTLAAMIGSGMLARSIEYQPGPGAKHLAWL  185 (336)
T ss_pred             ccHHHHHHHHHHHHHHHhccHHHHHHHHHHHhccHHHHHHHhcCchHHHHHHHHHHHhcchhhhcccCCCCccHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999888999999999


Q ss_pred             HHHHHhhhhhhhhhccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHH
Q psy2982          81 LHSALVGAVVAPICFIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEI  160 (443)
Q Consensus        81 ~fs~l~G~tL~pi~~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~v  160 (443)
                      ++++..|..++|+++.++++..+|.++|++|.|++|..+.|+++|||++||+||.+|+.+++++|+..+|+|   ..+.+
T Consensus       186 lHc~vlGAV~APlc~lgGPiLtrAa~YTaGIVGgLStvA~cAPSeKFL~MggPLaiGlGvVFvssl~sm~LP---Ptta~  262 (336)
T KOG1630|consen  186 LHCGVLGAVVAPLCFLGGPILTRAAWYTAGIVGGLSTVAACAPSEKFLNMGGPLAIGLGVVFVSSLGSMFLP---PTTAL  262 (336)
T ss_pred             HHHHHHHHHHhhHHhcccHHHHHHHHHHccccchhhhhhhcCcHHHHhhcCCCceeeeeeEehhhhhhhhcC---Cchhh
Confidence            999999999999999999999999999999999999999999999999999999999999999999999974   44555


Q ss_pred             HHHHHHHhhccc---eeEEEEEecCCc-------eEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q psy2982         161 EETLKRIQSHRG---VAGVIVINGDGI-------PIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDATN  220 (443)
Q Consensus       161 e~~l~rI~~~~g---V~GvvIf~~~Gi-------pIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp~d  220 (443)
                      -..+..+..|.|   +.|.+++|+|-+       |.-+.+.+-|..+++ ....|..+..-+.+.++..++
T Consensus       263 GA~LaSmslYGGLiLFS~FLLYDTQr~vk~ae~ypq~s~~~~~dPin~~msiymdvlnifiriv~il~ggq  333 (336)
T KOG1630|consen  263 GAGLASMSLYGGLILFSGFLLYDTQRVVKSAEKYPQYSEFPNYDPINACMSIYMDVLNIFIRIVMILGGGQ  333 (336)
T ss_pred             hhhhHHHHHhccHHHHHHHHHHhHHHHHHHHHhCcchhccCCCCchHHHHHHHHHHHHHHHHHHhhhcCCc
Confidence            666767777765   556666666432       233445555556666 556677777777666666544

>PRK10447 HflBKC-binding inner membrane protein; Provisional

Probab=99.91  E-value=5.9e-24  Score=203.87  Aligned_cols=196  Identities=17%  Similarity=0.144  Sum_probs=153.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHH
Q psy2982           5 YVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSA   84 (443)
Q Consensus         5 ~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs~   84 (443)
                      ..+||+||||.+++++++.|+++|++....+    ....+.++.+++.+++++.    .++.   +|++.+..+.++|++
T Consensus        16 ~~~~~Lr~vY~lLa~tl~~aa~ga~v~~~~~----~~~~~~~~~~~~~~gl~~~----~~~~---~~~~~~~~llf~fT~   84 (219)
T PRK10447         16 STHKVLRNTYFLLSLTLAFSAITATASTVLM----LPSPGLILTLVGMYGLMFL----TYKT---ANKPTGILSAFAFTG   84 (219)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHc----cchhHHHHHHHHHHHHHHH----HHHH---HcCCHHHHHHHHHHH
Confidence            4789999999999999999999999865321    1112223344556665553    2222   135689999999999


Q ss_pred             Hhhhhhhhhhc-c----CcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHH
Q psy2982          85 LVGAVVAPICF-I----GGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTE  159 (443)
Q Consensus        85 l~G~tL~pi~~-~----~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~  159 (443)
                      ++|.+++|++. |    +|++|.+||.+|+++|+++|++|++|||| +++||++|++|++++++++++|+|+    +++.
T Consensus        85 ~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a~~tk~D-fs~lg~~L~~~l~~li~~~l~~~F~----~s~~  159 (219)
T PRK10447         85 FLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYVLTTRKD-MSFLGGMLMAGIVVVLIGMVANIFL----QLPA  159 (219)
T ss_pred             HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHH----ccHH
Confidence            99999999993 3    46899999999999999999999999999 9999999999999999999999996    5554


Q ss_pred             HHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcCCCC
Q psy2982         160 IEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREIDATN  220 (443)
Q Consensus       160 ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LDp~d  220 (443)
                      ++.++.-+-.- =.+|++++|+|-++ |  .++|+..++| +++.|+++...+.+|.+...|
T Consensus       160 ~~~~~s~~g~l-lfsgyilyDTq~Ii-~--~g~~dyi~aAl~LYlDiinlFl~lL~il~~~~  217 (219)
T PRK10447        160 LHLAISAVFIL-ISSGAILFETSNII-H--GGETNYIRATVSLYVSLYNIFVSLLSILGFAS  217 (219)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHH-c--CCchHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence            54443222111 27899999998776 2  3677888888 999999999999999886543

>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]

Probab=99.90  E-value=9.7e-24  Score=204.27  Aligned_cols=196  Identities=18%  Similarity=0.191  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHh-hh-hHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHH
Q psy2982           4 QYVRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVS-GN-SMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWAL   81 (443)
Q Consensus         4 ~~vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~-~~-~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~   81 (443)
                      +..|++++|||.||+++++.|+++|+.....+...+... +. .|+..+++++++++++...+|     |.+.+...++.
T Consensus        18 ~~~~~f~~~vY~~~~~~L~~t~~~a~~~~~~~~~~~~~~~~~~~~vl~~a~l~~~~~~~~~~~~-----s~~~~~~~~~~   92 (233)
T COG0670          18 LGLNTFLRKVYLLLALGLLVTAVGAALAAYLLFNLGLLSLSPPGFVLIIAGLAGVFFLSRKINK-----SSPTALILFFV   92 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHhcc-----CcchHHHHHHH
Confidence            467899999999999999999999998655443322101 11 245788889998888876665     24588899999


Q ss_pred             HHHHhhhhhhhhh-ccCc----chHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccc
Q psy2982          82 HSALVGAVVAPIC-FIGG----PVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIM  156 (443)
Q Consensus        82 fs~l~G~tL~pi~-~~~~----~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~  156 (443)
                      |++++|.+++|++ .|.+    ..|.+||++|+++|+++|++|++|||| ++.+|++|+||+++++++|++|+|+    +
T Consensus        93 ~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~~~F~~ls~~g~~tk~D-ls~l~~~l~~aligLiiasvvn~Fl----~  167 (233)
T COG0670          93 YTALVGLTLSPILLVYAAISGGDAIAAAFGITALVFGALSLYGYTTKRD-LSSLGSFLFMALIGLIIASLVNIFL----G  167 (233)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHHHHHHH----c
Confidence            9999999999999 4443    459999999999999999999999999 9999999999999999999999995    6


Q ss_pred             hHHHHHHHHHHhhccceeEEEEEec------CCceEEEecCchhHHHHH-HHHHHHHHHHHHHhhhcC
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVING------DGIPIKTTLDNQTTVQYA-GLVSQLVDKAKSVVREID  217 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~------~GipIkst~d~~~~~~yA-~li~~lv~~Ars~vr~LD  217 (443)
                      |+..+..+       ++.|++++.+      +-+.-+ +..++....-| .++.|++....+.+|.+-
T Consensus       168 s~~l~~~I-------S~lgvlifsgli~yDtq~I~~~-~~~~~~~i~~AlsLYldfiNlF~~LL~i~g  227 (233)
T COG0670         168 SSALHLAI-------SVLGVLIFSGLIAYDTQNIKRM-EGGERLAIMGALSLYLDFINLFLSLLRILG  227 (233)
T ss_pred             CcHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH-hccchhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            66666665       4446666543      221111 22333344444 788999999999988764

>KOG1629|consensus

Probab=99.89  E-value=2e-23  Score=193.14  Aligned_cols=137  Identities=31%  Similarity=0.408  Sum_probs=115.3

Q ss_pred             hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh----ccCccHHHHHHHHHHHHHHHHhhcchh
Q psy2982         259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC----FIGGPVLIRAAWYTAGIVGAFKIGQGA  334 (443)
Q Consensus       259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~----~~~~~~i~~A~~~Ta~if~~lS~~~~~  334 (443)
                      .++-+|+++.|++..    .+||+++.  +..++++|+++.|+++||++    ..+|+++.+||.+|+.+|.|+|+    
T Consensus        56 ~lsalg~l~~miwl~----~~py~hk~--rl~lL~~fa~l~GasvGP~i~~~ididpsIliTAf~GTav~F~cfSa----  125 (235)
T KOG1629|consen   56 LLSALGSLGLMIWLM----FTPYEHKT--RLGLLFLFAFLTGASVGPLIKFCIDIDPSILITAFVGTAVIFVCFSA----  125 (235)
T ss_pred             hHHHHHHHHHHHHHh----CCCCccch--hHHHHHHHHHHcCCcccchhhheeccChHHHHHHHHhhHHHHHHHHH----
Confidence            456778988888765    47765444  33488999999999999988    57999999999999999999998    


Q ss_pred             hhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhH--HHHHHHHHHHhhcCCccchhhHHHHHHHHHHHH
Q psy2982         335 VAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLV--NEELWIMLRSAFLPPTTALGAGLYSITLYGGLL  412 (443)
Q Consensus       335 ~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~--~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gll  412 (443)
                      .|         ++           ++||+      |||+|+.+++  +.+.+.++.|.|++|.     ..+...+|.|++
T Consensus       126 sA---------ml-----------Arrre------YLylGg~L~s~~s~l~wl~l~n~~fgS~-----~v~~~qLY~Gll  174 (235)
T KOG1629|consen  126 SA---------ML-----------ARRRE------YLYLGGLLSSGLSLLLWLSLANSFFGSI-----WVFKFQLYVGLL  174 (235)
T ss_pred             HH---------HH-----------Hhhhh------hhhhhHHHHHHHHHHHHHHHHHHHhhHH-----HHHHHHHHHHHH
Confidence            22         11           56776      9999999883  5678899999999986     678999999999


Q ss_pred             HHHHHHHHHHHHHHhhhhhCC-CCc
Q psy2982         413 LFSGFLLYDTQKIITRAERTP-PYV  436 (443)
Q Consensus       413 vf~g~ilyDTQ~Ii~~~~~~~-~~~  436 (443)
                      +|+|||+||||+|+||+|++| ||+
T Consensus       175 vfvg~ivvdTQ~IiEKah~GdmDyv  199 (235)
T KOG1629|consen  175 VFVGFIVVDTQEIIEKAHHGDMDYV  199 (235)
T ss_pred             HhheeEEeeHHHHHHHHhcCChHHH
Confidence            999999999999999999999 664

>PRK10447 HflBKC-binding inner membrane protein; Provisional

Probab=99.84  E-value=3.5e-21  Score=184.81  Aligned_cols=130  Identities=20%  Similarity=0.103  Sum_probs=107.2

Q ss_pred             hhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhhc-c----CccHHHHHHHHHHHHHHHHhhcchh
Q psy2982         260 LTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPICF-I----GGPVLIRAAWYTAGIVGAFKIGQGA  334 (443)
Q Consensus       260 ~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~~-~----~~~~i~~A~~~Ta~if~~lS~~~~~  334 (443)
                      +.+++++++++...       ++++++.+.+++++||+++|.++||++. +    +|++|.+|+..|+++|+|+|+|+  
T Consensus        54 ~~~~~~~gl~~~~~-------~~~~~~~~~~llf~fT~~~G~~lg~i~~~y~~~~~~~iV~~A~~~Ta~iF~~ls~~a--  124 (219)
T PRK10447         54 LTLVGMYGLMFLTY-------KTANKPTGILSAFAFTGFLGYILGPILNTYLSAGMGDVIALALGGTALVFFCCSAYV--  124 (219)
T ss_pred             HHHHHHHHHHHHHH-------HHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH--
Confidence            34456666666432       1246678888999999999999999992 3    56899999999999999999842  


Q ss_pred             hhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHH
Q psy2982         335 VAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLF  414 (443)
Q Consensus       335 ~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf  414 (443)
                                      +       ++|||++.||++|++|.+    +++++++.|+|++++     ..+.+..++|+++|
T Consensus       125 ----------------~-------~tk~Dfs~lg~~L~~~l~----~li~~~l~~~F~~s~-----~~~~~~s~~g~llf  172 (219)
T PRK10447        125 ----------------L-------TTRKDMSFLGGMLMAGIV----VVLIGMVANIFLQLP-----ALHLAISAVFILIS  172 (219)
T ss_pred             ----------------H-------HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHccH-----HHHHHHHHHHHHHH
Confidence                            1       579999999999998886    557999999999875     67888889999999


Q ss_pred             HHHHHHHHHHHHhhhh
Q psy2982         415 SGFLLYDTQKIITRAE  430 (443)
Q Consensus       415 ~g~ilyDTQ~Ii~~~~  430 (443)
                      |||++||||+|+|++|
T Consensus       173 sgyilyDTq~Ii~~g~  188 (219)
T PRK10447        173 SGAILFETSNIIHGGE  188 (219)
T ss_pred             HHHHHHHHHHHHcCCc
Confidence            9999999999997644

>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family

Probab=99.82  E-value=1.4e-19  Score=172.37  Aligned_cols=202  Identities=22%  Similarity=0.263  Sum_probs=156.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhh---HHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHH
Q psy2982           6 VRDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNS---MLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALH   82 (443)
Q Consensus         6 vr~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~---~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~f   82 (443)
                      .|+|++|||.++++++++|+++++.....+...+ ..+++   |+..+.+++.++.+... +.  .+++.+.+..++.+|
T Consensus         2 ~~~fl~kVY~~l~~~l~~t~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~l~~~-~~--~~~~~~~~~~ll~~f   77 (212)
T cd06181           2 RRGFLRKVYGLLALQLLVTALVAYLGMFSPPLRN-VLSNTPLGWLLLLAFLGLVILLFCC-RI--KRRSSPANLILLFLF   77 (212)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHhccHHHHHHHHHHHHHHHHHHHH-HH--hccCHHHHHHHHHHH
Confidence            5899999999999999999999999877765443 22333   33445566655555441 21  123567899999999


Q ss_pred             HHHhhhhhhhhh-ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHH
Q psy2982          83 SALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIE  161 (443)
Q Consensus        83 s~l~G~tL~pi~-~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve  161 (443)
                      +.++|.+++|+. .+++..+.+|+.+|+++|++++++|++|||| ++++|+++.++++++++.++.|+|+    +++..+
T Consensus        78 t~~~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a~~tk~d-~~~~g~~l~~~~~~l~~~~l~~~f~----~~~~~~  152 (212)
T cd06181          78 TALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYALTTKRD-FSFLGGFLFMGLIVLIVASLVNIFL----QSPALQ  152 (212)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc-HHhHHHHHHHHHHHHHHHHHHHHHH----hcHHHH
Confidence            999999999999 5678889999999999999999999999999 9999999999999999999999995    454444


Q ss_pred             HHHHHHhhccceeEEEEEecCCceEEEe--cCchhHHHHH-HHHHHHHHHHHHHhhhcC
Q psy2982         162 ETLKRIQSHRGVAGVIVINGDGIPIKTT--LDNQTTVQYA-GLVSQLVDKAKSVVREID  217 (443)
Q Consensus       162 ~~l~rI~~~~gV~GvvIf~~~GipIkst--~d~~~~~~yA-~li~~lv~~Ars~vr~LD  217 (443)
                      ..+.-+-.- -.++.+++|.|-+.-+.+  .+++|...+| .+..|+++...+.+|.+.
T Consensus       153 ~~~~~~g~~-lf~~~l~~Dtq~i~~~~~~~~~~~d~i~~al~LylDiinlF~~iL~il~  210 (212)
T cd06181         153 LAISALGVL-LFSGYILYDTQLIIGGYRLYLSPDDYILAALSLYLDIINLFLSLLRILG  210 (212)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhhhhccCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            443211111 156777788765543332  4688999999 999999999999998764

Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.

>COG0670 Integral membrane protein, interacts with FtsH [General function prediction only]

Probab=99.80  E-value=1.6e-19  Score=174.99  Aligned_cols=137  Identities=23%  Similarity=0.229  Sum_probs=111.5

Q ss_pred             cchhHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-cc----CccHHHHHHHHHH
Q psy2982         248 TNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FI----GGPVLIRAAWYTA  322 (443)
Q Consensus       248 qn~~~~~~~~~~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~----~~~~i~~A~~~Ta  322 (443)
                      ++++|     ..+.++..++.++....+   .  ++|++.+...++.|++++|.+++|++ .|    ++.++.+||.+|+
T Consensus        56 ~~~~~-----~~vl~~a~l~~~~~~~~~---~--~~s~~~~~~~~~~~t~l~G~tL~~i~~~Y~~~~~~~~i~~af~~t~  125 (233)
T COG0670          56 SLSPP-----GFVLIIAGLAGVFFLSRK---I--NKSSPTALILFFVYTALVGLTLSPILLVYAAISGGDAIAAAFGITA  125 (233)
T ss_pred             ccccH-----HHHHHHHHHHHHHHHHHH---h--ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            45555     456666777777765432   2  12667777889999999999999999 33    3467999999999


Q ss_pred             HHHHHHhhcchhhhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHH
Q psy2982         323 GIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGL  402 (443)
Q Consensus       323 ~if~~lS~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~  402 (443)
                      ++|+++|+| |+                        .+|||++..+++++||.+    |+++++++|+|++++     .+
T Consensus       126 ~~F~~ls~~-g~------------------------~tk~Dls~l~~~l~~ali----gLiiasvvn~Fl~s~-----~l  171 (233)
T COG0670         126 LVFGALSLY-GY------------------------TTKRDLSSLGSFLFMALI----GLIIASLVNIFLGSS-----AL  171 (233)
T ss_pred             HHHHHHHHH-HH------------------------HHhhhHHHHHHHHHHHHH----HHHHHHHHHHHHcCc-----HH
Confidence            999999984 22                        568888889999999886    779999999999987     67


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy2982         403 YSITLYGGLLLFSGFLLYDTQKIITR  428 (443)
Q Consensus       403 ~~~~~y~gllvf~g~ilyDTQ~Ii~~  428 (443)
                      +.+..+.|+++|+|+|+||||||+|+
T Consensus       172 ~~~IS~lgvlifsgli~yDtq~I~~~  197 (233)
T COG0670         172 HLAISVLGVLIFSGLIAYDTQNIKRM  197 (233)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77778899999999999999999996

>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []

Probab=99.72  E-value=5.3e-17  Score=152.80  Aligned_cols=201  Identities=19%  Similarity=0.196  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHHHHh
Q psy2982           7 RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLAMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALV   86 (443)
Q Consensus         7 r~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs~l~   86 (443)
                      |+|++|||.+++.++.+|+++++.....|...+.-...+|...+++++..+......++.+ +.+.+.+...+..|+..+
T Consensus         1 ~~fl~kvy~~l~~~l~it~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~t~~~   79 (205)
T PF01027_consen    1 RQFLRKVYGLLALQLAITALGAFLVLASPLFLSQHFPLSWVSLIVSLVLLIFLYILFNRRR-RFPSNVALILLFIFTLLE   79 (205)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHH
Confidence            7999999999999999999999998776621111112335566677777744443332221 112345689999999999


Q ss_pred             hhhhhhhhc-cCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHHHHH
Q psy2982          87 GAVVAPICF-IGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEETLK  165 (443)
Q Consensus        87 G~tL~pi~~-~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~~l~  165 (443)
                      |.+++|+.. +++..+.+|+..|+++|++++++++.||+| ++.+|+++.++++++++.+++|+|++    ++..+..+.
T Consensus        80 g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~a~~~~~d-~~~~~~~l~~~l~~l~i~~l~~~f~~----~~~~~~~is  154 (205)
T PF01027_consen   80 GLLLGPISSFYDPSIVLQAFLLTAAIFIALTLYAFFTKRD-FTRWGGILFIGLIGLIIFGLVSIFLP----SSPLYLLIS  154 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcccchHHHHHHHHHHHHHHHHHHhc----chHHHHHHH
Confidence            999999994 579999999999999999999999999999 99999999999999999999999854    443443331


Q ss_pred             HHhhccceeEEEEEecCCceEEEec-CchhHHHHH-HHHHHHHHHHHHHhhh
Q psy2982         166 RIQSHRGVAGVIVINGDGIPIKTTL-DNQTTVQYA-GLVSQLVDKAKSVVRE  215 (443)
Q Consensus       166 rI~~~~gV~GvvIf~~~GipIkst~-d~~~~~~yA-~li~~lv~~Ars~vr~  215 (443)
                       .-..--..+.+++|.+ .+.|... .+|.+..+| +++.|++......+|.
T Consensus       155 -~~~~~lf~~~l~~Dt~-~i~~~~~~~~~~~i~~Al~Ly~d~i~lF~~iL~l  204 (205)
T PF01027_consen  155 -YIGILLFSLYLVYDTQ-RIIRRYFSPDDYAIIAALSLYLDIINLFLRILRL  204 (205)
T ss_pred             -HHHHHHHHHHHHHHHH-HHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             1111114455667776 3333222 222247777 8889999888887764

Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].

>cd06181 BI-1-like BAX inhibitor (BI)-1 like protein family

Probab=99.71  E-value=1.8e-17  Score=157.98  Aligned_cols=136  Identities=24%  Similarity=0.250  Sum_probs=108.6

Q ss_pred             hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHHHHHHHHHHHHhhcchhhhh
Q psy2982         259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGAFKIGQGAVAG  337 (443)
Q Consensus       259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~  337 (443)
                      .++.+.++++++.... .  ..+++++..+..++.+|+.++|.+++|++ .++++.+.+|+..|+++|+++++++     
T Consensus        44 ~~~~~~~l~~~~~l~~-~--~~~~~~~~~~~~ll~~ft~~~g~~l~~~~~~~~~~~i~~A~~~T~~if~~l~l~a-----  115 (212)
T cd06181          44 WLLLLAFLGLVILLFC-C--RIKRRSSPANLILLFLFTALMGVTLGPILSVYTAASVLQAFGITAAVFGGLSLYA-----  115 (212)
T ss_pred             HHHHHHHHHHHHHHHH-H--HHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-----
Confidence            3444455554443322 1  22345667788899999999999999999 5778889999999999999999831     


Q ss_pred             hhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHH
Q psy2982         338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGF  417 (443)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~g~  417 (443)
                                   +       .+|||++.|+++++++.+    ++++.++.|+|++++     ..+.+..++|+++|++|
T Consensus       116 -------------~-------~tk~d~~~~g~~l~~~~~----~l~~~~l~~~f~~~~-----~~~~~~~~~g~~lf~~~  166 (212)
T cd06181         116 -------------L-------TTKRDFSFLGGFLFMGLI----VLIVASLVNIFLQSP-----ALQLAISALGVLLFSGY  166 (212)
T ss_pred             -------------H-------hccccHHhHHHHHHHHHH----HHHHHHHHHHHHhcH-----HHHHHHHHHHHHHHHHH
Confidence                         1       457999999999988875    567899999999865     56788889999999999


Q ss_pred             HHHHHHHHHhhhhh
Q psy2982         418 LLYDTQKIITRAER  431 (443)
Q Consensus       418 ilyDTQ~Ii~~~~~  431 (443)
                      ++||||+|+++.|.
T Consensus       167 l~~Dtq~i~~~~~~  180 (212)
T cd06181         167 ILYDTQLIIGGYRL  180 (212)
T ss_pred             HHHHHHHHHHhhhh
Confidence            99999999999985

Mammalian members of this family of small transmembrane proteins have been shown to have an antiapoptotic effect either by stimulating the antiapoptotic function of Bcl-2, a well characterized oncogene, or inhibiting the proapoptotic effect of Bax, another member of the Bcl-2 family. Their broad tissue distribution and high degree of conservation suggests an important regulatory role. In plants, BI-1 like proteins play a role in pathogen resistance. A prokaryotic member, E.coli YccA, has been shown to interact with ATP-dependent protease FtsH, which degrades abnormal membrane proteins as part of a quality control mechanism to keep the integrity of biological membranes.

>PF01027 Bax1-I: Inhibitor of apoptosis-promoting Bax1; InterPro: IPR006214 Programmed cell-death involves a set of Bcl-2 family proteins, some of which inhibit apoptosis (Bcl-2 and Bcl-XL) and some of which promote it (Bax and Bak) []

Probab=99.60  E-value=2.2e-15  Score=141.82  Aligned_cols=142  Identities=27%  Similarity=0.371  Sum_probs=108.2

Q ss_pred             hhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHHHHHHHHHHHHhhcchhhhh
Q psy2982         259 NLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGAFKIGQGAVAG  337 (443)
Q Consensus       259 ~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~~~Ta~if~~lS~~~~~~a~  337 (443)
                      ..+.++++++.+......+..+ +++++.+...+..|+.++|..++|++ .++++++.+|+..|+++|++++++    + 
T Consensus        40 ~~~~i~~l~~~i~~~~~~~~~~-~~~~~~~~~~~~~~t~~~g~~~~~i~~~~~~~~v~~a~~~T~~if~~l~~~----a-  113 (205)
T PF01027_consen   40 WVSLIVSLVLLIFLYILFNRRR-RFPSNVALILLFIFTLLEGLLLGPISSFYDPSIVLQAFLLTAAIFIALTLY----A-  113 (205)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-
Confidence            3455666666633222222222 12344556789999999999999999 567999999999999999999983    2 


Q ss_pred             hhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccchhhHHHHHHHHHHHHHHHHH
Q psy2982         338 GAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTALGAGLYSITLYGGLLLFSGF  417 (443)
Q Consensus       338 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~~~~~~~~~~y~gllvf~g~  417 (443)
                                   .       .+|+|++.|+++++++..    ++++.++.++|++++     ....+..+.|+++|+++
T Consensus       114 -------------~-------~~~~d~~~~~~~l~~~l~----~l~i~~l~~~f~~~~-----~~~~~is~~~~~lf~~~  164 (205)
T PF01027_consen  114 -------------F-------FTKRDFTRWGGILFIGLI----GLIIFGLVSIFLPSS-----PLYLLISYIGILLFSLY  164 (205)
T ss_pred             -------------H-------HHhhhhcccchHHHHHHH----HHHHHHHHHHHhcch-----HHHHHHHHHHHHHHHHH
Confidence                         1       358999999999987765    668999999999865     34555568999999999


Q ss_pred             HHHHHHHHHhhhhhCCCC
Q psy2982         418 LLYDTQKIITRAERTPPY  435 (443)
Q Consensus       418 ilyDTQ~Ii~~~~~~~~~  435 (443)
                      ++||||+|+|+++..|+|
T Consensus       165 l~~Dt~~i~~~~~~~~~~  182 (205)
T PF01027_consen  165 LVYDTQRIIRRYFSPDDY  182 (205)
T ss_pred             HHHHHHHHHHHHccchHH
Confidence            999999999877666554

Human Bax inhibitor, BI-1, is an evolutionarily conserved integral membrane protein containing multiple membrane-spanning segments predominantly localised to intracellular membranes. It has 6-7 membrane-spanning domains. The C termini of the mammalian BI-1 proteins are comprised of basic amino acids resembling some nuclear targeting sequences, but otherwise the predicted proteins lack motifs that suggest a function. As plant BI-1 appears to localise predominantly to the ER, we hypothesized that plant BI-1 could also regulate cell death triggered by ER stress []. BI-1 appears to exert its effect through an interaction with calmodulin [].

>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []

Probab=99.32  E-value=9.1e-12  Score=102.10  Aligned_cols=88  Identities=30%  Similarity=0.584  Sum_probs=82.7

Q ss_pred             HHHHHHHHhhccceeEEEEEecCCceEEE-ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceeecC
Q psy2982         160 IEETLKRIQSHRGVAGVIVINGDGIPIKT-TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAP  238 (443)
Q Consensus       160 ve~~l~rI~~~~gV~GvvIf~~~GipIks-t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~Ia~  238 (443)
                      +|+.++++++.|||.|++++|.||.|+.+ ..+++++.++|.+..++...+++..++++ ++|++.+|+||++++++|.|
T Consensus         2 ~e~~l~~l~~~~gv~~~~l~~~dG~~i~~~~~~~~~~~~~aa~~a~~~~~~~~~~~~l~-~~~~~~v~i~~~~~~i~i~~   80 (91)
T PF03259_consen    2 IEELLEELQSVPGVRGAVLVDKDGLVIASSGIDDDDAEKLAAMAASLLAAAEKLAKELG-EGELEQVRIETEKGEIIITP   80 (91)
T ss_dssp             HHHHHHHHHHSTTEEEEEEEETTSEEEEETSSSHHHHHHHHHHHHHHHHHHHHHHHHHT-TSSEEEEEEEESSEEEEEEE
T ss_pred             hHHHHHHHhCCCCeeEEEEEcCCCCEEEEecCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCcEEEEEEECCCEEEEEE
Confidence            68899999999999999999999999999 88999999999999999999999999999 99999999999999999999


Q ss_pred             CCceEEEeec
Q psy2982         239 DKQFILIITT  248 (443)
Q Consensus       239 ~~~~~l~Vvq  248 (443)
                      .+++.+.+++
T Consensus        81 ~~~~~~L~v~   90 (91)
T PF03259_consen   81 VGDFYLLVVL   90 (91)
T ss_dssp             CSTCEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            9996665554

Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....

>KOG2322|consensus

Probab=99.30  E-value=2.8e-12  Score=122.92  Aligned_cols=154  Identities=18%  Similarity=0.209  Sum_probs=113.7

Q ss_pred             CceEEEeecchhHHHHHHhhhhhHHHHHHHHHHHhhhhccCCCCCchhHHHHHHHHHHHhhhhhhhhh-ccCccHHHHHH
Q psy2982         240 KQFILIITTNELLLLYIDLNLTMFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHSALVGAVVAPIC-FIGGPVLIRAA  318 (443)
Q Consensus       240 ~~~~l~Vvqn~~~~~~~~~~~~~~~sl~~~ig~~~~~~s~~~~~~~~~~~~~~~~ft~~~G~~l~pl~-~~~~~~i~~A~  318 (443)
                      +...-+|.+|++.- ++.+.+..+..+.+.+.-+       +++++..+.+++..||..++.+.|-.+ ++++.+|..|+
T Consensus        73 ~~~~~~v~~~~~~~-~~~~~vf~vt~l~l~c~~~-------~r~k~P~N~ilL~iFT~a~s~~~g~~~a~~~~~~VL~Al  144 (237)
T KOG2322|consen   73 EPVQDFVRRNPALY-WALIVVFIVTYLSLACCEG-------LRRKSPVNLILLGIFTLAEAFMTGLVTAFYDAKVVLLAL  144 (237)
T ss_pred             cHHHHHHHhCcHHH-HHHHHHHHHHHHHHHccCc-------ccccCcHHHhHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence            33345667788773 5555555555555554422       234566777788999999999999999 88999999999


Q ss_pred             HHHHHHHHHHhhcchhhhhhhhhhhhhhhhhhccccccccchhhccccccceeeehhhhhHHHHHHHHHHHhhcCCccch
Q psy2982         319 WYTAGIVGAFKIGQGAVAGGAVLGLGALCYYGLGLSSERGAQEVQYWDWVHYVTMDWDYLVNEELWIMLRSAFLPPTTAL  398 (443)
Q Consensus       319 ~~Ta~if~~lS~~~~~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~g~~l~~~~~~~~~l~n~F~~~~~~~  398 (443)
                      .+|+++++++++|    |.                     .+|+||+..+++++.-++++    ++.+++-.+++...  
T Consensus       145 ~IT~~V~~slt~~----t~---------------------qtK~DFt~~~~~l~~~l~vl----~~~g~I~~~f~~~~--  193 (237)
T KOG2322|consen  145 IITTVVVLSLTLF----TL---------------------QTKYDFTSLGGFLFALLIVL----LLFGLIFLFFPYGP--  193 (237)
T ss_pred             HHHHhheeeEEEE----EE---------------------eeccchhhhhhHHHHHHHHH----HHHHHHHHHHhhHH--
Confidence            9999999999984    31                     34799999999988776643    56666666666432  


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhCC-CCc
Q psy2982         399 GAGLYSITLYGGLLLFSGFLLYDTQKIITRAERTP-PYV  436 (443)
Q Consensus       399 ~~~~~~~~~y~gllvf~g~ilyDTQ~Ii~~~~~~~-~~~  436 (443)
                        .+..+....|.++||+|+.||||++++  |-.| +|+
T Consensus       194 --~~~~vya~lgAllf~~yl~~Dtqllm~--~~SPEEYI  228 (237)
T KOG2322|consen  194 --ILVMVYAALGALLFCGYLVYDTQLLMG--RISPEEYI  228 (237)
T ss_pred             --HHHHHHHHHHHHHHhHHHHhhhHHHhc--cCCHHHHH
Confidence              566676668899999999999999999  4444 453

>KOG2322|consensus

Probab=99.06  E-value=2.8e-10  Score=109.27  Aligned_cols=171  Identities=15%  Similarity=0.138  Sum_probs=128.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhHHH---HHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHHH
Q psy2982           7 RDRITSTYAYFGGSIVLSAASAYAVFTSPTMLRLVSGNSMLA---MFGSIALLMGSGMLVQSLEYKPGFGAKQIAWALHS   83 (443)
Q Consensus         7 r~~l~~vY~~ma~~l~~ta~~A~~~~~~~~~~~~~~~~~~l~---~~~~l~l~~~l~~~~~~~s~~~~~~~~~~~~~~fs   83 (443)
                      |.|+||||..++.=+++|.+.+.....++.+.++...|+|+.   ++..+...+.+.- ..+  ++++.+.+..++..|+
T Consensus        45 ~~FiRKVYsIl~~QLl~T~~~~~~~~~~~~~~~~v~~~~~~~~~~~~vf~vt~l~l~c-~~~--~r~k~P~N~ilL~iFT  121 (237)
T KOG2322|consen   45 WGFIRKVYSILSIQLLITLAVVAIFTVHEPVQDFVRRNPALYWALIVVFIVTYLSLAC-CEG--LRRKSPVNLILLGIFT  121 (237)
T ss_pred             HHHHHHHHHHHHHHHHHHHHheeEEEEccHHHHHHHhCcHHHHHHHHHHHHHHHHHHc-cCc--ccccCcHHHhHHHHHH
Confidence            579999999999999999988877666667777777888653   3333333333222 232  3456789999999999


Q ss_pred             HHhhhhhhhhh-ccCcchHHHHHHHHHHHHHHHhHhhhhcCCcccccchhHHHHHHHHHHHHhhhhhhhccccchHHHHH
Q psy2982          84 ALVGAVVAPIC-FIGGPVLIRAAWYTAGIVGGLSTVAACAPSDKFLTMGGPLAIGLGVVFASSIEFSYTKLDIMSTEIEE  162 (443)
Q Consensus        84 ~l~G~tL~pi~-~~~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~~lG~~L~~gli~liiaslvn~F~~l~l~S~~ve~  162 (443)
                      ..++.+.+-.. .+.+-.|..|+.+|+++++++++|+..||+| |+..|+.+.+-++++++..+.-.+++..-....+..
T Consensus       122 ~a~s~~~g~~~a~~~~~~VL~Al~IT~~V~~slt~~t~qtK~D-Ft~~~~~l~~~l~vl~~~g~I~~~f~~~~~~~~vya  200 (237)
T KOG2322|consen  122 LAEAFMTGLVTAFYDAKVVLLALIITTVVVLSLTLFTLQTKYD-FTSLGGFLFALLIVLLLFGLIFLFFPYGPILVMVYA  200 (237)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHhheeeEEEEEEeeccc-hhhhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999999 6789999999999999999999999999999 999999999999999999944333322212233333


Q ss_pred             HHHHHhhccceeEEEEEecCCce
Q psy2982         163 TLKRIQSHRGVAGVIVINGDGIP  185 (443)
Q Consensus       163 ~l~rI~~~~gV~GvvIf~~~Gip  185 (443)
                      .+.-|    -+++++++|+|.+.
T Consensus       201 ~lgAl----lf~~yl~~Dtqllm  219 (237)
T KOG2322|consen  201 ALGAL----LFCGYLVYDTQLLM  219 (237)
T ss_pred             HHHHH----HHhHHHHhhhHHHh
Confidence            33111    27889999987443

>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]

Probab=96.92  E-value=0.0071  Score=53.16  Aligned_cols=91  Identities=23%  Similarity=0.414  Sum_probs=74.8

Q ss_pred             HHHHHHHHHHhh-ccceeEEEEEecCCceEEEecC-chhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccccee
Q psy2982         158 TEIEETLKRIQS-HRGVAGVIVINGDGIPIKTTLD-NQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIM  235 (443)
Q Consensus       158 ~~ve~~l~rI~~-~~gV~GvvIf~~~GipIkst~d-~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~  235 (443)
                      +.+++.+..+.. -+||.|..|.+.||-||-+..+ +.++.++|.+.......+.+..++++ .+|+.-+-+|.||+.++
T Consensus         3 ~~l~~vL~~l~~~v~gv~ga~Ivs~DGL~ia~~~p~~~d~e~vaA~~a~~~g~~er~~~~l~-~g~leqi~I~g~~g~i~   81 (119)
T COG2018           3 NMLDEVLLDLNRNVPGVRGALVVSKDGLPIAAELPGNVDAEIVAAMAATALGLAERAADELG-GGELEQIMIEGKKGKIL   81 (119)
T ss_pred             hHHHHHHHHHHhhccCceEEEEEccCCceEeecCCCcccHHHHHHHHHHHHHHhHHHHHHhC-CCCceEEEEeccccEEE
Confidence            456777777777 9999999999999999999775 45789999999999999999988886 45688888999999988


Q ss_pred             ecCCC-ceEEEeecc
Q psy2982         236 IAPDK-QFILIITTN  249 (443)
Q Consensus       236 Ia~~~-~~~l~Vvqn  249 (443)
                      +.+-+ +..+.++-.
T Consensus        82 l~~~g~~~il~~~a~   96 (119)
T COG2018          82 LYDAGDDAILVVLAD   96 (119)
T ss_pred             EEEcCCceEEEEEcC
Confidence            88877 445555443

>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human

Probab=95.99  E-value=0.14  Score=51.36  Aligned_cols=74  Identities=11%  Similarity=-0.033  Sum_probs=59.5

Q ss_pred             HHHHHHhhhhhhhhh-----cc---CcchHHHHHHHHHHHHHHHhHhhhhcCCcccc-cchhHHHHHHHHHHHHhhhhhh
Q psy2982          80 ALHSALVGAVVAPIC-----FI---GGPVLIRAAWYTAGIVGGLSTVAACAPSDKFL-TMGGPLAIGLGVVFASSIEFSY  150 (443)
Q Consensus        80 ~~fs~l~G~tL~pi~-----~~---~~~~I~~Af~~Ta~iF~~lS~~g~~Tk~d~l~-~lG~~L~~gli~liiaslvn~F  150 (443)
                      ..|+.+.|+.+|-+-     .+   .|.++.+|.+.|.++|++|-+ .|.|+.=|-+ .+-++.+.+..++.+.+++|+.
T Consensus       118 ~~YA~~EG~flG~iS~~f~~~~~~~~pGIv~qAvl~T~~vf~~ml~-lYk~g~IrvT~kf~~iv~~a~~gi~~~~Lv~~v  196 (274)
T PF12811_consen  118 PIYAVLEGVFLGGISAVFENIYYSRYPGIVFQAVLGTFGVFAVMLA-LYKTGIIRVTPKFRRIVMIATFGIALFYLVNLV  196 (274)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHH-HHHhCCeeechHHHHHHHHHHHHHHHHHHHHHH
Confidence            479999999999774     12   378999999999999999876 7777653333 6778889999999999999988


Q ss_pred             hccc
Q psy2982         151 TKLD  154 (443)
Q Consensus       151 ~~l~  154 (443)
                      +.++
T Consensus       197 l~lf  200 (274)
T PF12811_consen  197 LSLF  200 (274)
T ss_pred             HHHH
Confidence            6433

Some members of BI1 family have been proved to play important roles in cell death [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	443
3l7h_A	97	Insights Into Dynein Assembly From A Dynein Interme		5e-35
1y4o_A	104	Solution Structure Of A Mouse Cytoplasmic Roadblock		1e-29
2b95_A	106	Solution Nmr Structure Of Protein Dynein Light Chai		5e-29
1z09_A	96	Solution Structure Of Km23 Length = 96		5e-29
2e8j_A	101	Solution Structure Of Dynein Light Chain 2a Length		5e-29
2hz5_A	106	Crystal Structure Of Human Dynein Light Chain Dnlc2		5e-29

>pdb|3L7H|A Chain A, Insights Into Dynein Assembly From A Dynein Intermediate Chain Light Chain Roadblock Structure Length = 97

Iteration: 1
 Score =  145 bits (365), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 64/87 (73%), Positives = 79/87 (90%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
           MS E+EETLKRIQSH+GV G IV+N +GIP+K+TLDN TTVQYAGL+SQL DKA+SVVR+
Sbjct: 1   MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRD 60
Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQF 242
           +D +ND+TFLR+RSKK+EIM+APDK F
Sbjct: 61  LDPSNDMTFLRVRSKKHEIMVAPDKDF 87

>pdb|1Y4O|A Chain A, Solution Structure Of A Mouse Cytoplasmic RoadblockLC7 Dynein Light Chain Length = 104

Iteration: 1
 Score =  127 bits (319), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/87 (64%), Positives = 71/87 (81%)
Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
           +  E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VRE
Sbjct: 8   LEAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYANLMHNFILKARSTVRE 67
Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQF 242
           ID  NDLTFLR+RSKKNEIM+APDK +
Sbjct: 68  IDPQNDLTFLRIRSKKNEIMVAPDKDY 94

>pdb|2B95|A Chain A, Solution Nmr Structure Of Protein Dynein Light Chain 2a, Cytoplasmic; Northeast Structural Genomics Consortium Target Hr2106 Length = 106

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 13  EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
            NDLTFLR+RSKKNEIM+APDK +
Sbjct: 73  QNDLTFLRIRSKKNEIMVAPDKDY 96

>pdb|1Z09|A Chain A, Solution Structure Of Km23 Length = 96

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 3   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 62
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
            NDLTFLR+RSKKNEIM+APDK +
Sbjct: 63  QNDLTFLRIRSKKNEIMVAPDKDY 86

>pdb|2E8J|A Chain A, Solution Structure Of Dynein Light Chain 2a Length = 101

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 8   EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 67
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
            NDLTFLR+RSKKNEIM+APDK +
Sbjct: 68  QNDLTFLRIRSKKNEIMVAPDKDY 91

>pdb|2HZ5|A Chain A, Crystal Structure Of Human Dynein Light Chain Dnlc2a Length = 106

Iteration: 1
 Score =  125 bits (314), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 55/84 (65%), Positives = 70/84 (83%)
Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 13  EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72
Query: 219 TNDLTFLRLRSKKNEIMIAPDKQF 242
            NDLTFLR+RSKKNEIM+APDK +
Sbjct: 73  QNDLTFLRIRSKKNEIMVAPDKDY 96

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	443
2hz5_A	106	Dynein light chain 2A, cytoplasmic; DNLC2A, transp	2e-44
3l7h_A	97	RE64145P, roadblock; LC7, KM23, dynein, light chai	1e-42
3msh_A	99	Hepatitis B virus X-interacting protein; alpha-bet	7e-04

>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A Length = 106

 Score =  149 bits (379), Expect = 2e-44
 Identities = 58/91 (63%), Positives = 74/91 (81%)

Query: 159 EIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDA 218
           E+EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID 
Sbjct: 13  EVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDP 72

Query: 219 TNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
            NDLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 73  QNDLTFLRIRSKKNEIMVAPDKDYFLIVIQN 103

>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A Length = 97

 Score =  144 bits (365), Expect = 1e-42
 Identities = 68/94 (72%), Positives = 84/94 (89%)

Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVRE 215
           MS E+EETLKRIQSH+GV G IV+N +GIP+K+TLDN TTVQYAGL+SQL DKA+SVVR+
Sbjct: 1   MSQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRD 60

Query: 216 IDATNDLTFLRLRSKKNEIMIAPDKQFILIITTN 249
           +D +ND+TFLR+RSKK+EIM+APDK FILI+  N
Sbjct: 61  LDPSNDMTFLRVRSKKHEIMVAPDKDFILIVIQN 94

>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A* Length = 99

 Score = 38.1 bits (88), Expect = 7e-04
 Identities = 11/57 (19%), Positives = 27/57 (47%), Gaps = 2/57 (3%)

Query: 156 MSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSV 212
           M   +E+ L+    +  + GV+  +  G+ +        + ++AG++S L  +A  +
Sbjct: 1   MEATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCR--GTLSDEHAGVISVLAQQAAKL 55

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	443
3l7h_A	97	RE64145P, roadblock; LC7, KM23, dynein, light chai	100.0
2hz5_A	106	Dynein light chain 2A, cytoplasmic; DNLC2A, transp	99.97
3leq_A	126	Uncharacterized protein CVNB5; PSI, MCSG, structur	95.64
1vet_B	125	P14, late endosomal/lysosomal MP1 interacting prot	95.52
3t12_B	136	Gliding protein MGLB; G-domain containing protein,	95.18
3msh_A	99	Hepatitis B virus X-interacting protein; alpha-bet	95.09
3kye_A	150	Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha s	94.76
1j3w_A	163	Giding PROTEIN-MGLB; gliding, motility, mutational	94.6

>3l7h_A RE64145P, roadblock; LC7, KM23, dynein, light chain, hydrolase, protei transport; 1.95A {Drosophila melanogaster} SCOP: d.110.7.1 PDB: 3l9k_A 1z09_A 2e8j_A 1y4o_A

Probab=100.00  E-value=9.2e-34  Score=237.83  Aligned_cols=95  Identities=71%  Similarity=1.078  Sum_probs=85.8

Q ss_pred             hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI  236 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I  236 (443)
                      ++|+||+++||++||||.|++|.|.+|+|+||++|++++++||+++.+|+++||+++|++||+|||+|||+|||||||||
T Consensus         2 ~~eveetl~ri~~~kgV~G~iI~n~~G~pirst~d~~~~~~yA~~~~~L~~~a~~~vrdlDp~del~fLRiRTkk~EimI   81 (97)
T 3l7h_A            2 SQEVEETLKRIQSHKGVVGTIVVNNEGIPVKSTLDNTTTVQYAGLMSQLADKARSVVRDLDPSNDMTFLRVRSKKHEIMV   81 (97)
T ss_dssp             -------CHHHHTSTTEEEEEEEETTSCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEE
T ss_pred             cHHHHHHHHHHhcCCCceEEEEECCCCCEeEEeCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEEEEeCCcEEEE
Confidence            56999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEeecchh
Q psy2982         237 APDKQFILIITTNEL  251 (443)
Q Consensus       237 a~~~~~~l~Vvqn~~  251 (443)
                      |||++|+++|+|||.
T Consensus        82 aPd~~f~liVvQ~~~   96 (97)
T 3l7h_A           82 APDKDFILIVIQNPT   96 (97)
T ss_dssp             EEETTEEEEEEEC--
T ss_pred             EcCCCEEEEEEecCC
Confidence            999999999999973

>2hz5_A Dynein light chain 2A, cytoplasmic; DNLC2A, transport protein; 2.10A {Homo sapiens} SCOP: d.110.7.1 PDB: 2b95_A

Probab=99.97  E-value=9e-32  Score=229.17  Aligned_cols=95  Identities=61%  Similarity=0.958  Sum_probs=86.5

Q ss_pred             hHHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceee
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMI  236 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~I  236 (443)
                      .+|+||+++||+++|||.|++|.|.||+||||++|++.+++||+++.+|+++||+++|++||+|||+|||+|||||||||
T Consensus        11 ~~evEe~l~RI~~~kgV~G~iIln~~G~pIrSt~d~~~~~~yA~li~~L~~~A~~~vr~lDp~deL~fLRiRTkkhEimI   90 (106)
T 2hz5_A           11 MAEVEETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMV   90 (106)
T ss_dssp             ----CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEE
T ss_pred             HHHHHHHHHHHhcCCCceEEEEEcCCCCeEEEecCchHHHHHHHHHHHHHHHHHHHHHccCCCCCeEEEEEEeCCcEEEE
Confidence            47999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceEEEeecchh
Q psy2982         237 APDKQFILIITTNEL  251 (443)
Q Consensus       237 a~~~~~~l~Vvqn~~  251 (443)
                      +||++|+++|+|||.
T Consensus        91 apd~~~~LiVvQ~~~  105 (106)
T 2hz5_A           91 APDKDYFLIVIQNPT  105 (106)
T ss_dssp             EC---CEEEEEECC-
T ss_pred             EecCCEEEEEEecCC
Confidence            999999999999973

>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}

Probab=95.64  E-value=0.039  Score=47.55  Aligned_cols=93  Identities=14%  Similarity=0.209  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHh-hccceeEEEEEecCCceEEEec--CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccce
Q psy2982         158 TEIEETLKRIQ-SHRGVAGVIVINGDGIPIKTTL--DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEI  234 (443)
Q Consensus       158 ~~ve~~l~rI~-~~~gV~GvvIf~~~GipIkst~--d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei  234 (443)
                      +++++.++++. ..|||.+.++.+.||.++-++.  |..++.+-|.....+...++..-++++ ..+++-+=+++.+..+
T Consensus         3 ~~l~~lL~~l~~~v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~-~G~~~qv~ve~~~G~l   81 (126)
T 3leq_A            3 SQLDQLLTGLVDRVAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFR-RGPVRQALIEMGKGYL   81 (126)
T ss_dssp             CHHHHHHHHHHHHCTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC--------------CEEEEECSSCEE
T ss_pred             chHHHHHHHHHhcCCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEEEeCCCEE
Confidence            46788899986 5899999999999999999875  556899999999999999999888885 5667667778888887


Q ss_pred             eecCCC-ceEEEeecchh
Q psy2982         235 MIAPDK-QFILIITTNEL  251 (443)
Q Consensus       235 ~Ia~~~-~~~l~Vvqn~~  251 (443)
                      ++.+=+ +..|.|.-++-
T Consensus        82 ~v~~ag~~a~L~vla~~~   99 (126)
T 3leq_A           82 ILTAAGPGAHLVVLTRQG   99 (126)
T ss_dssp             EEEESSTTEEEEEEECTT
T ss_pred             EEEEeCCCcEEEEEeCCC
Confidence            777666 46666654443

>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B

Probab=95.52  E-value=0.074  Score=45.82  Aligned_cols=96  Identities=13%  Similarity=0.220  Sum_probs=68.1

Q ss_pred             cchHHHHHHHHHHhhccceeEEEEEecCCceEEEec-CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccc
Q psy2982         155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNE  233 (443)
Q Consensus       155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~E  233 (443)
                      ++++.+++.++++ ..+||.+.++++.||-++-++. ++.++.+-|.....+...+++.-++.-.+++++-+=+..++--
T Consensus         2 L~~~~L~~~L~~l-~~~gv~~a~lvs~DGllia~s~~~~~dae~laAias~~~sl~~~~~~~~~~~g~~~q~~ve~~~G~   80 (125)
T 1vet_B            2 LRPKALTQVLSQA-NTGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGR   80 (125)
T ss_dssp             CCHHHHHHHHHHH-CCTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEE
T ss_pred             CcHHHHHHHHHHc-CCCCceEEEEECCCCCeEEecCCCCccHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEeCCCE
Confidence            4667889999999 7899999999999999998865 4557888888888888878887775333444444444444444


Q ss_pred             eeecCCCceEEEeecchh
Q psy2982         234 IMIAPDKQFILIITTNEL  251 (443)
Q Consensus       234 i~Ia~~~~~~l~Vvqn~~  251 (443)
                      +.|.+-++..|.|.-++.
T Consensus        81 l~i~~a~~a~L~Vla~~~   98 (125)
T 1vet_B           81 VAITRVANLLLCMYAKET   98 (125)
T ss_dssp             EEEEEETTEEEEEEECTT
T ss_pred             EEEEEcCCeEEEEEeCCC
Confidence            444444566666665444

>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*

Probab=95.18  E-value=0.1  Score=45.73  Aligned_cols=93  Identities=11%  Similarity=0.160  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHhhccceeEEEEEecCCceEEEec-----CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhccccccc
Q psy2982         158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-----DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKN  232 (443)
Q Consensus       158 ~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-----d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~  232 (443)
                      +.+++.++++....||.++++.|.||.+|-+..     ++.+....|.+...-...++..-+.+..+ |+.-+=...++.
T Consensus        11 ~~i~~iL~~L~~~~gv~~~~lvd~dG~vIa~~~~~~~~~~~d~~~lAAl~A~~~~a~~~la~~Lge~-~~~~l~~eGe~~   89 (136)
T 3t12_B           11 AAAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVASNAAATQALAKLLGEA-RFQEEVHQGERM   89 (136)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEEETTC-CCEEEECTTSCCCSCHHHHHHHHHHHHHHHHHHHHHTTCS-CCCCEEEECSSC
T ss_pred             HHHHHHHHHHHhhcCCeEEEEEcCCCCEEEEeccccCCCCCcHHHHHHHHHHHHHHHHHHHHHHCCC-chhHheEEcCcC
Confidence            467889999999999999999999999998864     35688889999999999999988888744 566666677777


Q ss_pred             ceeecCCC-ceEEEeecchh
Q psy2982         233 EIMIAPDK-QFILIITTNEL  251 (443)
Q Consensus       233 Ei~Ia~~~-~~~l~Vvqn~~  251 (443)
                      -+.+.+=+ ++.|+|+-+..
T Consensus        90 ~i~i~~vg~~~iLvvifd~~  109 (136)
T 3t12_B           90 GLYVDEAGEHALLVLVFDET  109 (136)
T ss_dssp             EEEEEESSTTEEEEEEECTT
T ss_pred             CEEEEEcCCCEEEEEEeCCC
Confidence            77777764 57775555443

>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*

Probab=95.09  E-value=0.088  Score=43.79  Aligned_cols=83  Identities=19%  Similarity=0.364  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCC-CCcchhcccccccceee
Q psy2982         158 TEIEETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDAT-NDLTFLRLRSKKNEIMI  236 (443)
Q Consensus       158 ~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~-deL~~LRirTkk~Ei~I  236 (443)
                      .++|+.++.+.+.|+|.|++..|.+|-.+.+.-+-+  .++|+.+..+.+.|+.    |||+ +|--.+-+-|....++|
T Consensus         3 ~~Le~~L~~~m~~pgvvGvlc~D~qGLcLg~~G~~s--~~~AG~i~~la~~Aak----L~p~~~~~P~I~LEsDs~~~~I   76 (99)
T 3msh_A            3 ATLEQHLEDTMKNPSIVGVLCTDSQGLNLGCRGTLS--DEHAGVISVLAQQAAK----LTSDPTDIPVVCLESDNGNIMI   76 (99)
T ss_dssp             CCHHHHHHHHHTSTTEEEEEEECTTCCEEEEEETCC--GGGHHHHHHHHHHHHH----TCCCSSCCCCEEEEETTEEEEE
T ss_pred             hHHHHHHHHHhccCCcEEEEEECCCCCcccccCCCC--cccchHHHHHHHHHHh----cCCCCCCCCEEEEEeCCceEEE
Confidence            357889999999999999999999999999875543  2456777888888876    6776 45444445555555555


Q ss_pred             cCCCceEEEe
Q psy2982         237 APDKQFILII  246 (443)
Q Consensus       237 a~~~~~~l~V  246 (443)
                      --++..++.|
T Consensus        77 qk~~~iTvAV   86 (99)
T 3msh_A           77 QKHDGITVAV   86 (99)
T ss_dssp             EEETTEEEEE
T ss_pred             EeCCcEEEEE
Confidence            5555555444

>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}

Probab=94.76  E-value=0.14  Score=45.59  Aligned_cols=102  Identities=12%  Similarity=0.142  Sum_probs=69.5

Q ss_pred             hhhhccccchHHHHHHHHHHh-hccceeEEEEEecCCceEEE-ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchh
Q psy2982         148 FSYTKLDIMSTEIEETLKRIQ-SHRGVAGVIVINGDGIPIKT-TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFL  225 (443)
Q Consensus       148 n~F~~l~l~S~~ve~~l~rI~-~~~gV~GvvIf~~~GipIks-t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~L  225 (443)
                      |++|+- -+..++++.++++. .-|||.+.++...||.+..| ..+..++.+.|.....+...++..-+++++..++.-.
T Consensus        16 ~~~~~~-~~~~~l~wlL~~L~~~vpGV~~AvvvS~DGLla~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv   94 (150)
T 3kye_A           16 NLYFQG-HHVSDLDWLMSGLVQRVPHTTSAVLLSCDGLVKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQV   94 (150)
T ss_dssp             ---------CHHHHHHHHHHHHHSTTEEEEEEEETTSCEEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEE
T ss_pred             ceeecC-CCcccHHHHHHHHHhcCCCeeEEEEEcCCCCEeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEE
Confidence            555432 24568999999995 68999999999999995554 3577889999999999999999999998744545444


Q ss_pred             cccccccceeecCCC-ceEEEeecch
Q psy2982         226 RLRSKKNEIMIAPDK-QFILIITTNE  250 (443)
Q Consensus       226 RirTkk~Ei~Ia~~~-~~~l~Vvqn~  250 (443)
                      =++..+.-+++.+-+ +..|.|.-++
T Consensus        95 ~VE~~~G~l~v~~aG~ga~LaVla~~  120 (150)
T 3kye_A           95 VVELDSTLLFVSTAGSGTCLAVLAGR  120 (150)
T ss_dssp             EEEESSEEEEEEEEETTEEEEEEEET
T ss_pred             EEEeCCcEEEEEEcCCCcEEEEEeCC
Confidence            455555555554443 4455555433

>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A

Probab=94.60  E-value=0.16  Score=45.74  Aligned_cols=95  Identities=11%  Similarity=0.149  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHHhhccceeEEEEEecCCceEEE-----ecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccc
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKT-----TLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKK  231 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIks-----t~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk  231 (443)
                      ...+++.++++...+||.++++.+.||.++-+     +.+..++.+.|.+...+...++..-+++.. .+++-+=+++.+
T Consensus        13 ~~~l~~lL~~L~~v~Gv~~avlvs~DGl~ia~~~~~~~~~~~d~d~lAA~~A~~~sl~~~~a~~l~~-G~~~q~~ve~~~   91 (163)
T 1j3w_A           13 YERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGE-ARFQEEVHQGER   91 (163)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTC-SSCSEEEEECSS
T ss_pred             HHHHHHHHHHHhccCCceEEEEEcCCCCEEEeecccccCCCCcHHHHHHHHHHHHHHHHHHHHHhCC-CCceEEEEEeCC
Confidence            35678889999889999999999999999998     554448899999999999999999888874 445555566666


Q ss_pred             cceeecCC-CceEEEeecchhH
Q psy2982         232 NEIMIAPD-KQFILIITTNELL  252 (443)
Q Consensus       232 ~Ei~Ia~~-~~~~l~Vvqn~~~  252 (443)
                      .-+.+.+= +++.|.|+-++-.
T Consensus        92 g~l~v~~~g~~a~L~Vla~~~a  113 (163)
T 1j3w_A           92 MGLYVDEAGEHALLVLVFDETA  113 (163)
T ss_dssp             CEEEEEESSTTEEEEEEECTTS
T ss_pred             cEEEEEEeCCCeEEEEEeCCCC
Confidence            66666654 4466666554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	443
d2hz5a1	90	d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplas	5e-46

>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Dynein light chain 2A, cytoplasmic
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  152 bits (385), Expect = 5e-46
 Identities = 57/89 (64%), Positives = 72/89 (80%)

Query: 161 EETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATN 220
           EETLKR+QS +GV G+IV+N +GIPIK+T+DN TT QYA L+   + KA+S VR+ID  N
Sbjct: 1   EETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQN 60

Query: 221 DLTFLRLRSKKNEIMIAPDKQFILIITTN 249
           DLTFLR+RSKKNEIM+APDK + LI+  N
Sbjct: 61  DLTFLRIRSKKNEIMVAPDKDYFLIVIQN 89

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	443
d2hz5a1	90	Dynein light chain 2A, cytoplasmic {Human (Homo sa	99.97
d1vetb_	118	Late endosomal/lysosomal Mp1 interacting protein p	97.23
d1j3wa_	134	Giding protein MglB {Thermus thermophilus [TaxId:	96.34

>d2hz5a1 d.110.7.1 (A:5-94) Dynein light chain 2A, cytoplasmic {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Dynein light chain 2A, cytoplasmic
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=6.6e-33  Score=227.76  Aligned_cols=90  Identities=63%  Similarity=0.994  Sum_probs=85.9

Q ss_pred             HHHHHHHhhccceeEEEEEecCCceEEEecCchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccceeecCCC
Q psy2982         161 EETLKRIQSHRGVAGVIVINGDGIPIKTTLDNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNEIMIAPDK  240 (443)
Q Consensus       161 e~~l~rI~~~~gV~GvvIf~~~GipIkst~d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~Ei~Ia~~~  240 (443)
                      ||+++||++||||.|++|+|.+|+|+||++|++++++||+++.+|+++||+++|++||+|||+|||+||||||||||||+
T Consensus         1 Eetl~Ri~~~kgV~g~iIln~~G~pirst~d~~~t~~yA~~~~~l~~~A~~~vrdlDp~del~flRlRTkk~Ei~IaPd~   80 (90)
T d2hz5a1           1 EETLKRLQSQKGVQGIIVVNTEGIPIKSTMDNPTTTQYASLMHSFILKARSTVRDIDPQNDLTFLRIRSKKNEIMVAPDK   80 (90)
T ss_dssp             CHHHHHHHTSTTEEEEEEECTTCCEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEESSCEEEEEC--
T ss_pred             ChHHHHHhcCCCceEEEEECCCCCEEEEcCCcHHHHHHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEecCCcEEEEEcCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceEEEeecch
Q psy2982         241 QFILIITTNE  250 (443)
Q Consensus       241 ~~~l~Vvqn~  250 (443)
                      +|+++|+|||
T Consensus        81 ~~~liVvQ~P   90 (90)
T d2hz5a1          81 DYFLIVIQNP   90 (90)
T ss_dssp             -CEEEEEECC
T ss_pred             CEEEEEEeCC
Confidence            9999999997

>d1vetb_ d.110.7.1 (B:) Late endosomal/lysosomal Mp1 interacting protein p14 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Late endosomal/lysosomal Mp1 interacting protein p14
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00068  Score=56.08  Aligned_cols=97  Identities=12%  Similarity=0.223  Sum_probs=79.3

Q ss_pred             cchHHHHHHHHHHhhccceeEEEEEecCCceEEEec-CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccccc
Q psy2982         155 IMSTEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKKNE  233 (443)
Q Consensus       155 l~S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk~E  233 (443)
                      ++.+.+++.+++++ .|||.|+++++.||.++-++. ++.+..+-|.....+...+++.-.+.=..+++.-+-+++++.-
T Consensus         2 l~~~~L~~iL~~~~-t~GV~~avlvs~DGl~ia~~~~~~~d~~~lAAi~a~~l~~~~~~a~~~~~~G~~~qviie~~~G~   80 (118)
T d1vetb_           2 LRPKALTQVLSQAN-TGGVQSTLLLNNEGSLLAYSGYGDTDARVTAAIASNIWAAYDRNGNQAFNEDSLKFILMDCMEGR   80 (118)
T ss_dssp             CCHHHHHHHHHHHC-CTTEEEEEEECTTCCEEEEEECCSSCHHHHHHHHHHHHHHHHHHHCCTTTCCCCCEEEEEETTEE
T ss_pred             CCHHHHHHHHHhcC-CCCeeEEEEECCCCCeeeecCCCccCHHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEEEcCCCE
Confidence            36778899999875 699999999999999998765 4457888899999999999877655324577888889999999


Q ss_pred             eeecCCCceEEEeecchhH
Q psy2982         234 IMIAPDKQFILIITTNELL  252 (443)
Q Consensus       234 i~Ia~~~~~~l~Vvqn~~~  252 (443)
                      +++.|-++..+.|+-++-.
T Consensus        81 l~i~~~g~~~L~vla~~~~   99 (118)
T d1vetb_          81 VAITRVANLLLCMYAKETV   99 (118)
T ss_dssp             EEEEEETTEEEEEEECTTS
T ss_pred             EEEEEcccCeEEEEecCCC
Confidence            9999999888877665544

>d1j3wa_ d.110.7.1 (A:) Giding protein MglB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: Giding protein MglB
species: Thermus thermophilus [TaxId: 274]

Probab=96.34  E-value=0.0086  Score=50.17  Aligned_cols=93  Identities=11%  Similarity=0.161  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHhhccceeEEEEEecCCceEEEec-----CchhHHHHHHHHHHHHHHHHHHhhhcCCCCCcchhcccccc
Q psy2982         157 STEIEETLKRIQSHRGVAGVIVINGDGIPIKTTL-----DNQTTVQYAGLVSQLVDKAKSVVREIDATNDLTFLRLRSKK  231 (443)
Q Consensus       157 S~~ve~~l~rI~~~~gV~GvvIf~~~GipIkst~-----d~~~~~~yA~li~~lv~~Ars~vr~LDp~deL~~LRirTkk  231 (443)
                      .+.+++.++++...+||.++++.++||.++-++.     ++.+..+.|.+...+...++..-++++.. |++-+-++.++
T Consensus         8 ~e~i~~vL~~l~~~~Gv~~a~lvs~dGl~ia~~~~~~~~~~~d~~~lAA~~a~~~~~~~~~a~~l~~g-~~~~~~ie~~~   86 (134)
T d1j3wa_           8 YERAVEVLEETLRETGARYALLIDRKGFVLAHKEALWAPKPPPLDTLATLVAGNAAATQALAKLLGEA-RFQEEVHQGER   86 (134)
T ss_dssp             HHHHHHHHHHHHHHHCCSEEEEEETTSCEEEEEECTTSCCCSCHHHHHHHHHHHHHHTHHHHHHTTCS-SCSEEEEECSS
T ss_pred             HHHHHHHHHHHhhccCceEEEEECCCCcEEEeecCcCCCccccHHHHHHHHHHHHHHHHHHHHHhcCC-ChhheeEEcCC
Confidence            4678899999999999999999999999997753     24578999999999999999999999754 57777788888


Q ss_pred             cceeecCC-CceEEEeecch
Q psy2982         232 NEIMIAPD-KQFILIITTNE  250 (443)
Q Consensus       232 ~Ei~Ia~~-~~~~l~Vvqn~  250 (443)
                      .-+++.+= +++.|.|+-++
T Consensus        87 g~v~i~~~g~~~~L~vl~~~  106 (134)
T d1j3wa_          87 MGLYVDEAGEHALLVLVFDE  106 (134)
T ss_dssp             CEEEEEESSTTEEEEEEECT
T ss_pred             cEEEEEEeCCCcEEEEEeCC
Confidence            88888774 45666665433