Psyllid ID: psy2989

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHcHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MAMALSDMFTllfpapwlfymytfgnhykplspvaACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Flexible Loop (DISEMBL)
MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Low Complexity Region (SEG)
MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered region (IsUnstruct)
*****SDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAV**
Disordered Region (DISOPRED)
*AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered Region (DISEMBL)
MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Disordered Region (DISPRO)
*AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiii
Transmembrane Helix (MEMSAT)
iiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
341575566	398	sex peptide receptor [Bemisia tabaci]	1.0	0.165	0.954	8e-30
341575564	399	sex peptide receptor [Lygus hesperus]	1.0	0.165	0.909	7e-29
193712541	398	PREDICTED: FMRFamide receptor-like [Acyr	1.0	0.165	0.909	2e-28
168823423	406	sex peptide receptor [Bombyx mori] gi|15	1.0	0.162	0.893	4e-28
383793872	424	sex peptide receptor [Helicoverpa assult	1.0	0.155	0.893	6e-28
449143233	421	sex peptide receptor [Spodoptera litura]	1.0	0.156	0.893	7e-28
307006411	424	sex peptide receptor [Helicoverpa armige	1.0	0.155	0.893	7e-28
357624630	423	sex peptide receptor [Danaus plexippus]	1.0	0.156	0.878	4e-27
242006557	352	class A rhodopsin-like G-protein coupled	1.0	0.187	0.893	1e-26
321471608	332	putative neuropeptide receptor [Daphnia	1.0	0.198	0.833	3e-26

>gi|341575566|gb|AEK80440.1| sex peptide receptor [Bemisia tabaci]

 Score =  134 bits (337), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYA+ IMNEVIPTLFHTASIWLTL
Sbjct: 87  MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAYTIMNEVIPTLFHTASIWLTL 146

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 147 ALAVQR 152

Source: Bemisia tabaci

Species: Bemisia tabaci

Genus: Bemisia

Family: Aleyrodidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|341575564|gb|AEK80439.1| sex peptide receptor [Lygus hesperus]

 Score =  130 bits (328), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 62/66 (93%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPV ACYAW  MN++IP LFHTASIWLTL
Sbjct: 88  MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVGACYAWRAMNDIIPGLFHTASIWLTL 147

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 148 ALAVQR 153

Source: Lygus hesperus

Species: Lygus hesperus

Genus: Lygus

Family: Miridae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193712541|ref|XP_001944453.1| PREDICTED: FMRFamide receptor-like [Acyrthosiphon pisum]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 60/66 (90%), Positives = 62/66 (93%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           M+MALSDMFTLLFPAPWLFYMYT GNHYKPLSPV +CYAW  MNEVIPTLFHTASIWLTL
Sbjct: 87  MSMALSDMFTLLFPAPWLFYMYTLGNHYKPLSPVESCYAWYAMNEVIPTLFHTASIWLTL 146

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 147 ALAVQR 152

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|168823423|ref|NP_001108346.1| sex peptide receptor [Bombyx mori] gi|158991495|gb|ABW86946.1| sex peptide receptor [Bombyx mori]

 Score =  128 bits (322), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 61/66 (92%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +FHTASIWLTL
Sbjct: 100 MAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAMFHTASIWLTL 159

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 160 ALAVQR 165

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383793872|gb|AFH53182.1| sex peptide receptor [Helicoverpa assulta]

 Score =  127 bits (320), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 61/66 (92%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +FHTASIWLTL
Sbjct: 118 MAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAMFHTASIWLTL 177

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 178 ALAVQR 183

Source: Helicoverpa assulta

Species: Helicoverpa assulta

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|449143233|gb|AGE92037.1| sex peptide receptor [Spodoptera litura]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 61/66 (92%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +FHTASIWLTL
Sbjct: 115 MAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAMFHTASIWLTL 174

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 175 ALAVQR 180

Source: Spodoptera litura

Species: Spodoptera litura

Genus: Spodoptera

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307006411|gb|ADK79103.2| sex peptide receptor [Helicoverpa armigera]

 Score =  127 bits (320), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 61/66 (92%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AWN MNEVIP +FHTASIWLTL
Sbjct: 118 MAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVRACQAWNYMNEVIPAMFHTASIWLTL 177

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 178 ALAVQR 183

Source: Helicoverpa armigera

Species: Helicoverpa armigera

Genus: Helicoverpa

Family: Noctuidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357624630|gb|EHJ75336.1| sex peptide receptor [Danaus plexippus]

 Score =  125 bits (313), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/66 (87%), Positives = 61/66 (92%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMAL DMFT+LFPAPWLFYMYTFGNHYKPLSPV AC AW+ MNEVIP +FHTASIWLTL
Sbjct: 118 MAMALCDMFTMLFPAPWLFYMYTFGNHYKPLSPVHACQAWHYMNEVIPAMFHTASIWLTL 177

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 178 ALAVQR 183

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242006557|ref|XP_002424116.1| class A rhodopsin-like G-protein coupled receptor GPRnna6, putative [Pediculus humanus corporis] gi|212507433|gb|EEB11378.1| class A rhodopsin-like G-protein coupled receptor GPRnna6, putative [Pediculus humanus corporis]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 59/66 (89%), Positives = 59/66 (89%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           M MALSDMFTLLFPAPWLFYMYTFGNHYKPL PVAACY WN M E IP LFHTASIWLTL
Sbjct: 44  MVMALSDMFTLLFPAPWLFYMYTFGNHYKPLWPVAACYLWNAMKEDIPALFHTASIWLTL 103

Query: 61  ALAVQR 66
           ALAVQR
Sbjct: 104 ALAVQR 109

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|321471608|gb|EFX82580.1| putative neuropeptide receptor [Daphnia pulex]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 55/66 (83%), Positives = 62/66 (93%)

Query: 1   MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
           MAMALSDMFTLLFPAPWL Y+YTFGNH++PL P++ACYA+N MNEVIP LFHTASIWLTL
Sbjct: 53  MAMALSDMFTLLFPAPWLLYLYTFGNHHRPLRPLSACYAYNFMNEVIPALFHTASIWLTL 112

Query: 61  ALAVQR 66
           ALA+QR
Sbjct: 113 ALAIQR 118

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
FB|FBgn0029768	435	SPR "Sex peptide receptor" [Dr	1.0	0.151	0.666	2.4e-21
WB|WBGene00010986	527	sprr-1 [Caenorhabditis elegans	1.0	0.125	0.376	2e-06
WB|WBGene00009629	451	sprr-2 [Caenorhabditis elegans	0.954	0.139	0.318	5.1e-05

FB|FBgn0029768 SPR "Sex peptide receptor" [Drosophila melanogaster (taxid:7227)]

 Score = 254 (94.5 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 44/66 (66%), Positives = 55/66 (83%)

Query:     1 MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTL 60
             M MA+ DM T++FPAP L+YMYTFGNHYKPL PV+ C A++I NE++P + HT S+WLTL
Sbjct:   128 MGMAICDMLTVIFPAPGLWYMYTFGNHYKPLHPVSMCLAYSIFNEIMPAMCHTISVWLTL 187

Query:    61 ALAVQR 66
             ALAVQR
Sbjct:   188 ALAVQR 193

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0048042 "regulation of post-mating oviposition" evidence=IMP

GO:0008188 "neuropeptide receptor activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0045434 "negative regulation of female receptivity, post-mating" evidence=IMP

WB|WBGene00010986 sprr-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 119 (46.9 bits), Expect = 2.0e-06, P = 2.0e-06
 Identities = 26/69 (37%), Positives = 38/69 (55%)

Query:     1 MAMALSDMFTLLFPAPWLFYMYTFGNHYKPLS---PVAACYAWNIMNEVIPTLFHTASIW 57
             +AMA++++ T L   PW  Y YT   +   L    P   C     M   +P++FHT +IW
Sbjct:    68 LAMAVTELLTGLSCLPWFTYYYTLSGYKNDLQTGLPSFWCDMIPYMAAFLPSIFHTMAIW 127

Query:    58 LTLALAVQR 66
             LT+ LA+QR
Sbjct:   128 LTVYLAIQR 136

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

WB|WBGene00009629 sprr-2 [Caenorhabditis elegans (taxid:6239)]

 Score = 105 (42.0 bits), Expect = 5.1e-05, P = 5.1e-05
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query:     3 MALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAA--CYAWNIMNEVIPTLFHTASIWLTL 60
             MA++++   L P PW  + ++ GN  K    +    CY      +  P +FH  ++WLT+
Sbjct:    99 MAIAELLVGLVPLPWTLFFFSMGN-IKETHRLELWWCYLQKYSMDAFPPVFHMIAMWLTV 157

Query:    61 ALAVQR 66
              LA QR
Sbjct:   158 LLAAQR 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.331   0.137   0.475    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        66   0.00091  102 3  11 21  0.48    27
                                                     29  0.48    28


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  501 (53 KB)
  Total size of DFA:  106 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:02
  No. of threads or processors used:  24
  Search cpu time:  7.96u 0.07s 8.03t   Elapsed:  00:00:07
  Total cpu time:  7.96u 0.07s 8.03t   Elapsed:  00:00:09
  Start:  Thu Aug 15 12:24:09 2013   End:  Thu Aug 15 12:24:18 2013

GO:0007186 "G-protein coupled receptor signaling pathway" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
PF10324	318	7TM_GPCR_Srw: Serpentine type 7TM GPCR chemorecept	98.93
PF00001	257	7tm_1: 7 transmembrane receptor (rhodopsin family)	96.31
PHA02834	323	chemokine receptor-like protein; Provisional	90.42
PHA03087	335	G protein-coupled chemokine receptor-like protein;	87.45
PHA03234	338	DNA packaging protein UL33; Provisional	82.93

>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=98.93  E-value=3.3e-09  Score=74.35  Aligned_cols=66  Identities=18%  Similarity=0.362  Sum_probs=49.6

Q ss_pred             CchhhHhhhhhhhhhhHHHHHHhhc--CCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           1 MAMALSDMFTLLFPAPWLFYMYTFG--NHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         1 ~~mAvaDllvml~y~P~~~y~y~~~--~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +|+|+||++.|+.++|..+..+...  +...............++++.++..+|++|.||+|+||++|
T Consensus        36 ~~Iai~Dl~~~~~~~~~~~~~~~~~~~~~~C~~~~sy~~~~~~~~~~~l~~~~~~~S~WL~V~mA~iR  103 (318)
T PF10324_consen   36 IGIAICDLLYMLSILIWELFFFIIFYEDDECIPPYSYFWAYFKLIMESLSDIFRRISIWLGVLMALIR  103 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4799999999999999998665533  11222222333333446899999999999999999999988

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].

>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes)

Probab=96.31  E-value=0.027  Score=35.80  Aligned_cols=58  Identities=21%  Similarity=0.370  Sum_probs=42.2

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||++|+++.+...|........+.   .......|.    +...+...+...|++..+.+|+-|
T Consensus        25 ~Lav~Dll~~~~~~~~~~~~~~~~~---~~~~~~~C~----~~~~~~~~~~~~s~~~~~~is~dR   82 (257)
T PF00001_consen   25 NLAVADLLVGLFCIPFYIYSLLFDD---WIFSSFLCR----IFGFLFYFSSFSSIFSLVAISIDR   82 (257)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHSS---CTSHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcccccccccccccccc---ccccccccc----cccccccccccccccccccccccc
Confidence            6999999999999999887666411   112233343    445667788899999999998865

They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....

>PHA02834 chemokine receptor-like protein; Provisional

Probab=90.42  E-value=1.4  Score=31.40  Aligned_cols=56  Identities=13%  Similarity=0.186  Sum_probs=32.5

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++ +..+|+.++... ++   -......|.....    +..+....|++.-+.+|+-|
T Consensus        68 nLAiaDll~-~~~lP~~i~~~~-~~---w~~g~~~C~~~~~----~~~~~~~~Si~tL~~IsidR  123 (323)
T PHA02834         68 NIAMSDLML-VFSFPFIIHNDL-NE---WIFGEFMCKLVLG----VYFVGFFSNMFFVTLISIDR  123 (323)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHc-CC---cCCcchHHHhHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            699999986 567999876443 11   1122334654432    22233446777777777755

>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional

Probab=87.45  E-value=2.9  Score=29.30  Aligned_cols=57  Identities=19%  Similarity=0.254  Sum_probs=32.4

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||++..+ .+|...+....++.   ......|.....    +....=..|+|+.+.+|+-|
T Consensus        80 ~laisDll~~~-~~~~~~~~~~~~~~---~~~~~~C~~~~~----~~~~~~~~S~~~l~~iaidR  136 (335)
T PHA03087         80 NLAVSDLLFVM-TLPFQIYYYILFQW---SFGEFACKIVSG----LYYIGFYNSMNFITVMSVDR  136 (335)
T ss_pred             HHHHHHHHHHH-hHHHHHHHHhCCCC---CCCcHHHHHHHH----HHHHHHHHHHHHHHHHHHHH
Confidence            68999988665 46766644332221   122334544432    22223357888888888765

>PHA03234 DNA packaging protein UL33; Provisional

Probab=82.93  E-value=5.9  Score=28.84  Aligned_cols=18  Identities=17%  Similarity=0.154  Sum_probs=13.8

Q ss_pred             chhhHhhhhhhhhhhHHH
Q psy2989           2 AMALSDMFTLLFPAPWLF   19 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~   19 (66)
                      .||+||+++.+...|+..
T Consensus        75 NLAvaDLL~~l~lp~~~~   92 (338)
T PHA03234         75 TLFASDFLHMLCVFFLTL   92 (338)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            699999999886655544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
3uon_A	467	Human M2 muscarinic acetylcholine, receptor T4 LY	97.3
3pbl_A	481	D(3) dopamine receptor, lysozyme chimera; structur	97.19
3rze_A	452	Histamine H1 receptor, lysozyme chimera; structura	97.17
4amj_A	315	Beta-1 adrenergic receptor; membrane protein, 7TMR	97.16
4grv_A	510	Neurotensin receptor type 1, lysozyme chimera; G-p	97.07
3sn6_R	514	Lysozyme, beta-2 adrenergic receptor; seven transm	97.0
4dkl_A	464	MU-type opioid receptor, lysozyme chimera; G-prote	96.97
2ks9_A	364	Substance-P receptor; water, autodock, NK1, neurop	96.94
2rh1_A	500	Beta-2-adrenergic receptor/T4-lysozyme chimera; GP	96.92
1u19_A	349	Rhodopsin; G protein-coupled receptor, membrane pr	96.92
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	96.83
3eml_A	488	Human adenosine A2A receptor/T4 lysozyme chimera;	96.7
4eiy_A	447	Adenosine receptor A2A/soluble cytochrome B562 CH;	96.52
3vw7_A	484	Proteinase-activated receptor 1, lysozyme; high re	96.44
4ea3_A	434	Fusion protein of nociceptin receptor and cytochr;	96.37
3odu_A	502	C-X-C chemokine receptor type 4, lysozyme chimera;	95.81
3v2y_A	520	Sphingosine 1-phosphate receptor 1, lysozyme CHIM;	95.13
2lnl_A	296	C-X-C chemokine receptor type 1; G protein coupled	93.6

>3uon_A Human M2 muscarinic acetylcholine, receptor T4 LY fusion protein; G protein-coupled receptor, GPCR, SI protein-antagonist complex; HET: QNB BGC; 3.00A {Homo sapiens} PDB: 4daj_A*

Probab=97.30  E-value=0.0007  Score=46.51  Aligned_cols=58  Identities=17%  Similarity=0.264  Sum_probs=44.7

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+..+..++..   .....|...    ..+..++...|+|..+++|+-|
T Consensus        64 ~La~aDll~~~~~~p~~~~~~~~~~~~---~~~~~C~~~----~~~~~~~~~~s~~~l~~isidR  121 (467)
T 3uon_A           64 SLACADLIIGVFSMNLYTLYTVIGYWP---LGPVVCDLW----LALDYVVSNASVMNLLIISFDR  121 (467)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHSSSCC---SCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCCcc---CCcchHhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999998887754322   334556544    4567788899999999999866

>3pbl_A D(3) dopamine receptor, lysozyme chimera; structural genomics, PSI-2, PSI-biology, protein structure initiative; HET: ETQ MAL; 2.89A {Homo sapiens}

Probab=97.19  E-value=0.0013  Score=45.46  Aligned_cols=59  Identities=24%  Similarity=0.547  Sum_probs=43.7

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.++....++..  ......|...    ..+..++...|+|..+++|+-|
T Consensus        79 ~La~aDll~~~~~~p~~~~~~~~~~~~--~~~~~~C~~~----~~~~~~~~~~s~~~l~~is~dR  137 (481)
T 3pbl_A           79 SLAVADLLVATLVMPWVVYLEVTGGVW--NFSRICCDVF----VTLDVMMCTASIWNLCAISIDR  137 (481)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHTTSCC--CSCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCcc--ccCcchhhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999998877653322  1224455444    3466778899999999999865

>3rze_A Histamine H1 receptor, lysozyme chimera; structural genomics, PSI-biology, membrane protein, GPCR NET GPCR, hydrolase; HET: 5EH D7V OLC; 3.10A {Homo sapiens}

Probab=97.17  E-value=0.0012  Score=45.18  Aligned_cols=58  Identities=17%  Similarity=0.292  Sum_probs=44.1

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+..+..++.   ......|...    ..+...+...|+|..+++|+-|
T Consensus        49 ~La~~Dll~~~~~~p~~~~~~~~~~~---~~~~~~C~~~----~~~~~~~~~~s~~~l~~is~dR  106 (452)
T 3rze_A           49 SLSVADLIVGAVVMPMNILYLLMSKW---SLGRPLCLFW----LSMDYVASTASIFSVFILCIDR  106 (452)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHSSSC---SSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCc---cCCchhHhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999999988775432   2334455444    4466778899999999999865

>4amj_A Beta-1 adrenergic receptor; membrane protein, 7TMR BETA1-adrenoceptor, stabilising mutat biased agonist; HET: CVD 2CV; 2.30A {Meleagris gallopavo} PDB: 2y01_A* 2y02_A* 2y03_A* 2y04_A* 4ami_A* 2y00_A* 2vt4_A* 2ycw_A* 2ycx_A* 2ycy_A* 2ycz_A*

Probab=97.16  E-value=0.00095  Score=43.12  Aligned_cols=58  Identities=24%  Similarity=0.301  Sum_probs=43.7

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+.....++..   .....|..+    ..+...+...|+|..+.+|+-|
T Consensus        52 ~LaiaDll~~~~~~p~~~~~~~~~~~~---~~~~~C~~~----~~~~~~~~~~S~~~l~~isidR  109 (315)
T 4amj_A           52 SLACADLVVGLLVVPFGATLVVRGTWL---WGSFLCELW----TSLDVLCVTASIETLCVIAIDR  109 (315)
T ss_dssp             HHHHHHHHCCCCCHHHHHHHHHHSSCC---SCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHhcCCee---ccccHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999988877654322   334456544    4466777889999999999866

>4grv_A Neurotensin receptor type 1, lysozyme chimera; G-protein coupled receptor, G-protein, signaling protein-agonist complex; HET: EPE; 2.80A {Rattus norvegicus}

Probab=97.07  E-value=0.0015  Score=47.03  Aligned_cols=60  Identities=25%  Similarity=0.339  Sum_probs=43.6

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++.+..+|+.++.+...+.. -......|..+    ..+..++-++|++..+++|+-|
T Consensus        76 ~La~aDll~~~~~~p~~~~~~~~~~~~-w~~g~~~C~~~----~~~~~~~~~~S~~~l~~is~dR  135 (510)
T 4grv_A           76 SLALSDLLILLLAMPVELYNFIWVHHP-WAFGDAGCRGY----YFLRDACTYATALNVASLSVAR  135 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTCCSS-CSSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCC-EEhhHHHHHHH----HHHHHHHHHHHHHHHHHHHHHh
Confidence            699999999999999998877643321 12224455444    3466678899999999998865

>3sn6_R Lysozyme, beta-2 adrenergic receptor; seven transmembrane receptor, nanobody, G protein-coupled RE GPCR, signal transduction, G protein signaling; HET: P0G; 3.20A {Enterobacteria phage T4} PDB: 3kj6_A 2r4s_A 2r4r_A 4gbr_A*

Probab=97.00  E-value=0.0016  Score=46.50  Aligned_cols=58  Identities=26%  Similarity=0.178  Sum_probs=44.1

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+.....++..   .....|..+    ..+...+.++|+|..+++|+-|
T Consensus       223 nLAiaDll~~~~~~p~~~~~~~~~~~~---~~~~~C~~~----~~l~~~~~~~S~~~l~~isidR  280 (514)
T 3sn6_R          223 SLACADLVMGLAVVPFGAAHILTKTWT---FGNFWCEFW----TSIDVLCVTASIETLCVIAVDR  280 (514)
T ss_dssp             HHHHHHHTTTTTHHHHHHHHHHHTSCC---SCSHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHcCCee---CCcchhhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999998877754322   224455444    4466678899999999999876

>4dkl_A MU-type opioid receptor, lysozyme chimera; G-protein coupled receptor, 7 transmembrane receptor, signal protein-antagonist complex; HET: BF0 CLR MPG 1PE; 2.80A {Mus musculus} PDB: 4ej4_A* 4djh_A*

Probab=96.97  E-value=0.0022  Score=43.87  Aligned_cols=57  Identities=21%  Similarity=0.194  Sum_probs=42.4

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++. +|+.+..+..++..   .....|..+    ..+..++..+|+|..+++|+-|
T Consensus        58 ~La~~Dll~~~~-~p~~~~~~~~~~~~---~~~~~C~~~----~~~~~~~~~~s~~~l~~is~dR  114 (464)
T 4dkl_A           58 NLALADALATST-LPFQSVNYLMGTWP---FGNILCKIV----ISIDYYNMFTSIFTLCTMSVDR  114 (464)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHHHSSCC---SCSHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhCCcc---cccchhhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999988 99888777755422   234456444    4466778889999999999865

>2ks9_A Substance-P receptor; water, autodock, NK1, neuropeptide receptor-NEU complex; NMR {Homo sapiens} PDB: 2ksa_A 2ksb_A

Probab=96.94  E-value=0.0027  Score=42.36  Aligned_cols=58  Identities=21%  Similarity=0.213  Sum_probs=42.9

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+.....++..   .....|...    ..+...+...|+|..+.+|+-|
T Consensus        73 ~LaiaDll~~~~~~p~~~~~~~~~~~~---~~~~~C~~~----~~~~~~~~~~s~~~l~~isidR  130 (364)
T 2ks9_A           73 NLAFAEASMAAFNTVVNFTYAVHNEWY---YGLFYCKFH----NFFPIAAVFASIYSMTAVAFDR  130 (364)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHHHTSCS---SCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCcc---chHHHHHhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999987766543321   234456443    4566778889999999999866

>2rh1_A Beta-2-adrenergic receptor/T4-lysozyme chimera; GPCR, 7TM, fusion, lipidic cubic phase, lipidic, mesophase, cholesterol, membrane protein; HET: MAL CAU CLR PLM 12P; 2.40A {Homo sapiens} PDB: 3p0g_A* 3d4s_A* 3ny8_A* 3ny9_A* 3nya_A* 3pds_A*

Probab=96.92  E-value=0.0026  Score=45.30  Aligned_cols=58  Identities=26%  Similarity=0.184  Sum_probs=42.7

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+..+..+...   .....|..+    ..+..++..+|+|..+++|+-|
T Consensus        81 nLAiaDll~~~~~~p~~~~~~~~~~w~---~~~~~C~~~----~~~~~~~~~~Si~~l~~isidR  138 (500)
T 2rh1_A           81 SLACADLVMGLAVVPFGAAHILMKMWT---FGNFWCEFW----TSIDVLCVTASIETLCVIAVDR  138 (500)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHTSCC---SHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCCc---CCcchhhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999988877654321   334456444    3455667789999999999865

>1u19_A Rhodopsin; G protein-coupled receptor, membrane protein, retinal protei photoreceptor, signaling protein; HET: MAN NAG BMA RET PLM HTO HTG; 2.20A {Bos taurus} SCOP: f.13.1.2 PDB: 1hzx_A* 1gzm_A* 1l9h_A* 2g87_A* 2hpy_A* 2i35_A* 2i36_A* 2i37_A* 2ped_A* 3oax_A* 3c9l_A* 1jfp_A* 1ln6_A* 1f88_A* 3cap_A* 3dqb_A* 3pqr_A* 3pxo_A* 3c9m_A* 2x72_A* ...

Probab=96.92  E-value=0.0033  Score=41.40  Aligned_cols=58  Identities=21%  Similarity=0.354  Sum_probs=42.8

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|..++....+..   ......|..    ...+...+...|+|..+.+|+-|
T Consensus        79 ~Lai~Dll~~~~~~~~~~~~~~~~~~---~~~~~~C~~----~~~~~~~~~~~s~~~l~~isidR  136 (349)
T 1u19_A           79 NLAVADLFMVFGGFTTTLYTSLHGYF---VFGPTGCNL----EGFFATLGGEIALWSLVVLAIER  136 (349)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHTSC---TTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcchHHHHHHhcCee---eCChhHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            69999999999999998877664331   123444543    34556678889999999999866

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A*

Probab=96.83  E-value=0.0033  Score=43.60  Aligned_cols=58  Identities=22%  Similarity=0.260  Sum_probs=41.6

Q ss_pred             chhhHhhhhhhhh-hhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFP-APWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y-~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++.. +|+.+.....++.   ......|..    ...+...+.+.|+|+.+++|+-|
T Consensus        75 ~LaiaDll~~~~~~~p~~~~~~~~~~~---~~~~~~C~~----~~~~~~~~~~~S~~~l~~isidR  133 (448)
T 2z73_A           75 NLAFSDFTFSLVNGFPLMTISCFLKKW---IFGFAACKV----YGFIGGIFGFMSIMTMAMISIDR  133 (448)
T ss_dssp             HHHHHHHHHHHHHSTTHHHHHHHTTSC---CSHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHhcCCc---cCCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999875 8887766553321   122444543    34566788899999999999876

>3eml_A Human adenosine A2A receptor/T4 lysozyme chimera; caffeine, GPCR, membrane protein, LCP, mesophase, structural genomics, PSI-2; HET: ZMA STE; 2.60A {Homo sapiens} PDB: 3qak_A*

Probab=96.70  E-value=0.0029  Score=43.49  Aligned_cols=56  Identities=21%  Similarity=0.383  Sum_probs=41.2

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+..+. +    .......|.    +...+..++..+|+|..+++|+-|
T Consensus        62 ~La~aDll~~~~~~p~~~~~~~-~----~~~~~~~C~----~~~~~~~~~~~~s~~~l~~is~dR  117 (488)
T 3eml_A           62 SLAAADIAVGVLAIPFAITIST-G----FCAACHGCL----FIACFVLVLTQSSIFSLLAIAIDR  117 (488)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHTT-C----CEECHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc-c----ccccchHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6999999999999999887554 1    112234454    344566778889999999999865

>4eiy_A Adenosine receptor A2A/soluble cytochrome B562 CH; novel protein engineering, GPCR network, PSI-biology, struct genomics, membrane protein, GPCR; HET: ZMA CLR OLA OLC OLB; 1.80A {Homo sapiens} PDB: 3vg9_A* 3vga_A* 2ydv_A* 2ydo_A* 3uza_A* 3rey_A* 3rfm_A* 3pwh_A* 3uzc_A* 4er9_A

Probab=96.52  E-value=0.0052  Score=41.88  Aligned_cols=56  Identities=20%  Similarity=0.287  Sum_probs=40.3

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|+.+..+...     ......|...    ..+...+...|+|..+.+|+-|
T Consensus        72 ~La~~Dll~~~~~~p~~~~~~~~~-----~~~~~~C~~~----~~~~~~~~~~S~~~l~~is~dR  127 (447)
T 4eiy_A           72 SLAAADIAVGVLAIPFAITISTGF-----CAACHGCLFI----ACFVLVLTQSSIFSLLAIAIDR  127 (447)
T ss_dssp             HHHHHHHHHHHTHHHHHHHHHTTC-----EEEHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccc-----ccCccHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999988754411     1223345433    4556677889999999999865

>3vw7_A Proteinase-activated receptor 1, lysozyme; high resolution structure, protease-activated receptor 1, in conformation, antagonist vorapaxar; HET: VPX OLC; 2.20A {Homo sapiens}

Probab=96.44  E-value=0.0091  Score=41.20  Aligned_cols=58  Identities=19%  Similarity=0.213  Sum_probs=38.8

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++. +|+....+..++..  ......|..+    ..+..++-.+|+|..+++|+-|
T Consensus        61 ~La~aDll~~~~-~~~~~~~~~~~~~~--~~~~~~C~~~----~~~~~~~~~~S~~~l~~is~dR  118 (484)
T 3vw7_A           61 HLATADVLFVSV-LPFKISYYFSGSDW--QFGSELCRFV----TAAFYCNMYASILLMTVISIDR  118 (484)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHTTSCC--CSCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH-HHHHHHHHHhcCCc--ccchhHHhHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            699999999876 55555555433212  2334556544    3456677789999999999865

>3odu_A C-X-C chemokine receptor type 4, lysozyme chimera; structural genomics, PSI-2, protein structure initiative; HET: ITD OLC OLA; 2.50A {Homo sapiens} PDB: 3oe8_A* 3oe6_A* 3oe0_A* 3oe9_A* 2k03_B* 2k04_B 2k05_B*

Probab=95.81  E-value=0.031  Score=38.73  Aligned_cols=56  Identities=20%  Similarity=0.266  Sum_probs=39.9

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++. ..+|+.+..+.. +   .......|...    ..+..++...|+|..+++|+-|
T Consensus        89 ~La~~Dll~~-~~~p~~~~~~~~-~---~~~~~~~C~~~----~~~~~~~~~~s~~~l~~is~dR  144 (502)
T 3odu_A           89 HLSVADLLFV-ITLPFWAVDAVA-N---WYFGNFLCKAV----HVIYTVNLYSSVWILAFISLDR  144 (502)
T ss_dssp             HHHHHHHHHH-TTHHHHHHHHHT-C---CCSHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHhc-C---CcCCchhhhhH----HHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999995 688988776653 2   11233445444    4566778889999999999865

>3v2y_A Sphingosine 1-phosphate receptor 1, lysozyme CHIM; EDG receptor, lipid receptor, multiple sclerosi autoimmunity, structural genomics, PSI-biology; HET: ML5 NAG; 2.80A {Homo sapiens} PDB: 3v2w_A*

Probab=95.13  E-value=0.048  Score=39.13  Aligned_cols=57  Identities=23%  Similarity=0.203  Sum_probs=38.9

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|..+.... ....   .....|.    +...+..++-.+|++..+++|+-|
T Consensus       104 nLA~aDll~~~~~~p~~~~~~~-~~~~---~~~~~c~----~~~~~~~~~~~~S~~~l~~isidR  160 (520)
T 3v2y_A          104 NLALSDLLAGVAYTANLLLSGA-TTYK---LTPAQWF----LREGSMFVALSASVFSLLAIAIER  160 (520)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSGG-GGTT---SCHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHccc-ccee---eCccccc----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6999999999999998876522 1111   2233343    334456677789999999988866

>2lnl_A C-X-C chemokine receptor type 1; G protein coupled receptor, GPCR, membrane protei transmembrane, 7TM, phospholipid, signaling, signaling PROT; NMR {Homo sapiens}

Probab=93.60  E-value=0.21  Score=32.38  Aligned_cols=56  Identities=18%  Similarity=0.200  Sum_probs=33.5

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++. +|....... .+..   .....|....    .+...+-..|++..+.+|+-|
T Consensus        52 nLAvaDll~~l~-~p~~~~~~~-~~~~---~~~~~c~~~~----~~~~~~~~~s~~~l~~isidR  107 (296)
T 2lnl_A           52 NLALADLLFALT-LPIWAASKV-NGWI---FGTFLCKVVS----LLKEVNFYSGILLLACISVDR  107 (296)
T ss_dssp             HHHHHHHHHHHH-HHHHHHHHH-SSSC---CSSHHHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh-hhHHHhhcc-CCCc---cchhHHHHHh----hhhhhhHHHHHHHHHHHHhhh
Confidence            699999999875 565555444 2211   2234454443    334455567788777777755

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	66
d1u19a_	348	Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}	96.65

>d1u19a_ f.13.1.2 (A:) Rhodopsin {Cow (Bos taurus) [TaxId: 9913]}

class: Membrane and cell surface proteins and peptides
fold: Family A G protein-coupled receptor-like
superfamily: Family A G protein-coupled receptor-like
family: Rhodopsin-like
domain: Rhodopsin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=96.65  E-value=0.0027  Score=40.44  Aligned_cols=58  Identities=21%  Similarity=0.360  Sum_probs=41.2

Q ss_pred             chhhHhhhhhhhhhhHHHHHHhhcCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Q psy2989           2 AMALSDMFTLLFPAPWLFYMYTFGNHYKPLSPVAACYAWNIMNEVIPTLFHTASIWLTLALAVQR   66 (66)
Q Consensus         2 ~mAvaDllvml~y~P~~~y~y~~~~~~~~~~p~~~~y~~~~~h~~~~~~~HTiSiwLTv~LAv~R   66 (66)
                      +||+||+++++..+|..++....+...   .....|.    ....+...+-..|++..+.+|+-|
T Consensus        78 nLaiaDll~~~~~~~~~~~~~~~~~~~---~~~~~c~----~~~~~~~~~~~~s~~~l~~is~~R  135 (348)
T d1u19a_          78 NLAVADLFMVFGGFTTTLYTSLHGYFV---FGPTGCN----LEGFFATLGGEIALWSLVVLAIER  135 (348)
T ss_dssp             HHHHHHHHHHHHTHHHHHHHHHHTSCT---THHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhhccCccc---cCchhhh----hhhhccccceeeecchhhhhhccc
Confidence            699999999999999998877754322   2233333    334556667788888888888765