Psyllid ID: psy3001
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | 2.2.26 [Sep-21-2011] | |||||||
| Q92887 | 1545 | Canalicular multispecific | yes | N/A | 0.689 | 0.268 | 0.423 | 9e-93 | |
| Q28689 | 1564 | Canalicular multispecific | no | N/A | 0.696 | 0.267 | 0.409 | 3e-91 | |
| O35379 | 1528 | Multidrug resistance-asso | yes | N/A | 0.674 | 0.265 | 0.419 | 3e-88 | |
| Q8HXQ5 | 1530 | Multidrug resistance-asso | yes | N/A | 0.677 | 0.266 | 0.418 | 7e-88 | |
| P33527 | 1531 | Multidrug resistance-asso | no | N/A | 0.677 | 0.266 | 0.416 | 1e-87 | |
| Q8CG09 | 1532 | Multidrug resistance-asso | yes | N/A | 0.677 | 0.266 | 0.420 | 2e-87 | |
| B2RX12 | 1523 | Canalicular multispecific | no | N/A | 0.682 | 0.269 | 0.402 | 2e-87 | |
| Q6UR05 | 1531 | Multidrug resistance-asso | no | N/A | 0.677 | 0.266 | 0.416 | 9e-87 | |
| Q864R9 | 1531 | Multidrug resistance-asso | N/A | N/A | 0.677 | 0.266 | 0.413 | 9e-87 | |
| O15438 | 1527 | Canalicular multispecific | no | N/A | 0.684 | 0.269 | 0.406 | 2e-85 |
| >sp|Q92887|MRP2_HUMAN Canalicular multispecific organic anion transporter 1 OS=Homo sapiens GN=ABCC2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 341 bits (875), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 223/526 (42%), Positives = 295/526 (56%), Gaps = 111/526 (21%)
Query: 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINC 62
A G + AS LH +L NIL + M FFDTTP GR+++RF+ D+ TVD LP LRSWI C
Sbjct: 1046 AFGFVHASNILHKQLLNNILRAPMRFFDTTPTGRIVNRFAGDISTVDDTLPQSLRSWITC 1105
Query: 63 LFSVLYLM-------PV-TITVFFYGFV-ISLGTLFAAKRLHEKLLKSMLRWSPLF--FD 111
++ + PV TI V G + +S+ + + + L S+ R SP++ F
Sbjct: 1106 FLGIISTLVMICMATPVFTIIVIPLGIIYVSVQMFYVSTSRQLRRLDSVTR-SPIYSHFS 1164
Query: 112 TT----PVGRV-----------------------------------------LSRFSSDV 126
T PV R L+ F S +
Sbjct: 1165 ETVSGLPVIRAFEHQQRFLKHNEVRIDTNQKCVFSWITSNRWLAIRLELVGNLTVFFSAL 1224
Query: 127 NTLDNKLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183
+ + TLS V LS ITQTLNWLVRMTS++ETNIVAVERI EY + EA W
Sbjct: 1225 MMVIYRDTLSGDTVGFVLSNALNITQTLNWLVRMTSEIETNIVAVERITEYTKVENEAPW 1284
Query: 184 VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
V DK+P +WP KG+++F +Y+VRYR L+LV G+VGRTGAGKSSLT
Sbjct: 1285 VTDKRPPPDWPSKGKIQFNNYQVRYRPELDLVLRGITCDIGSMEKIGVVGRTGAGKSSLT 1344
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LFRI+E A G IIIDGVDI ++GLH LR +LTIIPQ P+
Sbjct: 1345 NCLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIPQ-----------DPI-------- 1385
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES--VSRSPIYSHFGET 347
+F+ ++ + + PF +N + + +L L+S S SH
Sbjct: 1386 -----------LFSGSLR-MNLDPF-NNYSDEEIWKALELAHLKSFVASLQLGLSHEVTE 1432
Query: 348 VTGN--VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
GN +GQRQL+CL RALLRK+KIL+LDEATAA+DLETD+LIQ+TI++EFAHCTV+TIA
Sbjct: 1433 AGGNLSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDNLIQTTIQNEFAHCTVITIA 1492
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
HRL+TI+DSD+V+VLD G ++E SP L++ FY MAK+AG+
Sbjct: 1493 HRLHTIMDSDKVMVLDNGKIIECGSPEELLQIPGP-FYFMAKEAGI 1537
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Mediates hepatobiliary excretion of numerous organic anions. May function as a cellular cisplatin transporter. Homo sapiens (taxid: 9606) |
| >sp|Q28689|MRP2_RABIT Canalicular multispecific organic anion transporter 1 OS=Oryctolagus cuniculus GN=ABCC2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 336 bits (862), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 214/522 (40%), Positives = 288/522 (55%), Gaps = 103/522 (19%)
Query: 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINC 62
A+G AS LH +L NIL + MSFF+TTP+GR+++RF+ D+ TVD LP LRSW+ C
Sbjct: 1044 ASGCAHASNILHKQLLNNILRAPMSFFNTTPIGRIVNRFAGDISTVDDTLPQSLRSWMMC 1103
Query: 63 LFSVL--YLMPVTITVFFYGFVISLGTLFAAKRL-------HEKLLKSMLRWSPLFFDTT 113
+++ +M T F +I L ++ A ++ + L S+ R SP++ T
Sbjct: 1104 FLAIISTLIMICMATPVFAVIIIPLAIIYVAVQVFYVATSRQLRRLDSVTR-SPIYSHFT 1162
Query: 114 ------PVGRVLSR-----------------------------------------FSSDV 126
PV R FSS +
Sbjct: 1163 ETVSGLPVIRAFEHQQRFLKQNEIGIDTNQKCVSSWITSNRWLAFRLELVGNLVVFSSAL 1222
Query: 127 NTLDNKLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183
+ + TLS V LS ITQTLNWLVRMTS+ ETNIVAVERI EY + EA W
Sbjct: 1223 MMVIYRDTLSGDVVGFVLSNALNITQTLNWLVRMTSETETNIVAVERITEYIKVENEAPW 1282
Query: 184 VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
V DK+P WP KGE++F +Y+VRYR L+LV G+VGRTGAGKSSLT
Sbjct: 1283 VTDKRPPAGWPHKGEIQFSNYQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLT 1342
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LFRI+E A G I IDG+DI ++GLH LR +LTIIPQ PV + +
Sbjct: 1343 NCLFRILEAAGGHITIDGIDIASIGLHDLRGKLTIIPQ-----------DPVLFSGSLRM 1391
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
++ F ++ + F + LQ SR++ E
Sbjct: 1392 NLDPFNNYSDEEIWRALELAHLKSFVAGLQH---GLSREVSEAED--------------N 1434
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
++GQRQL+CL RALLRK+KIL+LDEATAA+DLETD LIQ+TIR+EF+HCTV+TIAHRL+
Sbjct: 1435 LSIGQRQLLCLGRALLRKSKILVLDEATAAVDLETDHLIQTTIRNEFSHCTVITIAHRLH 1494
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TI+DSD+++VLD G +VE+ SP L+++ A F MAK++G+
Sbjct: 1495 TIMDSDKIMVLDNGNIVEYGSPEELLES-AGPFSLMAKESGI 1535
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Mediates hepatobiliary excretion of numerous organic anions. Oryctolagus cuniculus (taxid: 9986) |
| >sp|O35379|MRP1_MOUSE Multidrug resistance-associated protein 1 OS=Mus musculus GN=Abcc1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 326 bits (836), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 223/532 (41%), Positives = 299/532 (56%), Gaps = 126/532 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LHL +L N+L S MSFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1037 GGIFASRRLHLDLLYNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLF 1096
Query: 65 SVL--------------YLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF- 109
SV+ ++P V+F+ + + A K L+S+ R SP++
Sbjct: 1097 SVIGAVIIILLATPIAAVIIPPLGLVYFF-----VQRFYVASSRQLKRLESVSR-SPVYS 1150
Query: 110 -FDTTPVGRVLSR---------FSSDVNTLDN---------------------------- 131
F+ T +G + R SD+ +N
Sbjct: 1151 HFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLF 1210
Query: 132 --------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180
+ +LS V ++S +IT LNWLVRM+S++ETNIVAVER+KEY ET +E
Sbjct: 1211 AALFAVISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERLKEYSETEKE 1270
Query: 181 AEW-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGK 225
A W + + P WP G VEF+DY +RYRE L+LV GIVGRTGAGK
Sbjct: 1271 APWQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGRTGAGK 1330
Query: 226 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFV 285
SSLTL LFRI E A+G IIIDGV+I +GLH LR ++TIIPQ PV
Sbjct: 1331 SSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKITIIPQ-----------DPV---- 1375
Query: 286 IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPI---- 340
+F+ ++ + + PF S V + +L L+ VS P
Sbjct: 1376 ---------------LFSGSLR-MNLDPF-SQYSDEEVWMALELAHLKGFVSALPDKLNH 1418
Query: 341 -YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETD+LIQSTIR++F C
Sbjct: 1419 ECAEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDC 1476
Query: 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TVLTIAHRLNTI+D RV+VLDKG V E +PS L++ + IFYSMAKDAGL
Sbjct: 1477 TVLTIAHRLNTIMDYTRVIVLDKGEVRECGAPSELLQQRG-IFYSMAKDAGL 1527
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Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Mus musculus (taxid: 10090) |
| >sp|Q8HXQ5|MRP1_BOVIN Multidrug resistance-associated protein 1 OS=Bos taurus GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 325 bits (832), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 222/530 (41%), Positives = 301/530 (56%), Gaps = 122/530 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LHL +L N+L S +SFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1039 GGIFASRRLHLDLLHNVLRSPISFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLF 1098
Query: 65 S-------VLYLMPVTITV-----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
+ +L P+ + Y FV + A K L+S+ R SP++ F
Sbjct: 1099 NVIGACIIILLATPMAAVIIPPLGLIYFFV---QRFYVASSRQLKRLESVSR-SPVYSHF 1154
Query: 111 DTTPVG-RVLSRF--------SSDVNTLDN------------------------------ 131
+ T +G V+ F SD+ +N
Sbjct: 1155 NETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAS 1214
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1215 LFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1274
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
W + D P +WP+ G VEF+DY +RYRE L+LV GIVGRTGAGKSS
Sbjct: 1275 WQIQDMAPPKDWPQVGRVEFRDYGLRYREDLDLVLKHINVTIDGGEKVGIVGRTGAGKSS 1334
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIID ++I +GLH LR ++TIIPQ PV
Sbjct: 1335 LTLGLFRIKESAEGEIIIDDINIAKIGLHDLRFKITIIPQ-----------DPV------ 1377
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIY----- 341
+F+ ++ + + PF S V TS +L L+ VS P
Sbjct: 1378 -------------LFSGSLR-MNLDPF-SQYSDEEVWTSLELAHLKGFVSALPDKLNHEC 1422
Query: 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETDDLIQSTIR++F CTV
Sbjct: 1423 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFDDCTV 1480
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG + E+ SPS L++ + +FYSMAKD+GL
Sbjct: 1481 LTIAHRLNTIMDYTRVIVLDKGEIQEWGSPSDLLQQRG-LFYSMAKDSGL 1529
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Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. May protect milk against xenobiotics. Hydrolyzes ATP with low efficiency. Bos taurus (taxid: 9913) |
| >sp|P33527|MRP1_HUMAN Multidrug resistance-associated protein 1 OS=Homo sapiens GN=ABCC1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 324 bits (831), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 221/530 (41%), Positives = 299/530 (56%), Gaps = 122/530 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LH+ +L +IL S MSFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1040 GGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLF 1099
Query: 65 SV-------LYLMPVTITV-----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
+V L P+ + Y FV + A K L+S+ R SP++ F
Sbjct: 1100 NVIGACIVILLATPIAAIIIPPLGLIYFFV---QRFYVASSRQLKRLESVSR-SPVYSHF 1155
Query: 111 DTTPVGRVLSR---------FSSDVNTLDN------------------------------ 131
+ T +G + R SD+ +N
Sbjct: 1156 NETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1215
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1216 LFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1275
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYRE--------------GLELVGIVGRTGAGKSS 227
W + + P WP+ G VEF++Y +RYRE G E VGIVGRTGAGKSS
Sbjct: 1276 WQIQETAPPSSWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSS 1335
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIIDG++I +GLH LR ++TIIPQ PV
Sbjct: 1336 LTLGLFRINESAEGEIIIDGINIAKIGLHDLRFKITIIPQ-----------DPV------ 1378
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPI-----Y 341
+F+ ++ + + PF S V TS +L L+ VS P
Sbjct: 1379 -------------LFSGSLR-MNLDPF-SQYSDEEVWTSLELAHLKDFVSALPDKLDHEC 1423
Query: 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETDDLIQSTIR++F CTV
Sbjct: 1424 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTV 1481
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG + E+ +PS L++ + +FYSMAKDAGL
Sbjct: 1482 LTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLLQQRG-LFYSMAKDAGL 1530
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Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Homo sapiens (taxid: 9606) |
| >sp|Q8CG09|MRP1_RAT Multidrug resistance-associated protein 1 OS=Rattus norvegicus GN=Abcc1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 324 bits (830), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 223/530 (42%), Positives = 298/530 (56%), Gaps = 122/530 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LHL +L+N+L S MSFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1041 GGIFASRRLHLDLLQNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLF 1100
Query: 65 SV-------LYLMPVTITV-----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
SV L P+ + Y FV + A K L+S+ R SP++ F
Sbjct: 1101 SVIGAVIIILLATPIAAVIIPPLGLVYFFV---QRFYVASSRQLKRLESVSR-SPVYSHF 1156
Query: 111 DTTPVG-RVLSRF--------SSDVNTLDN------------------------------ 131
+ T +G V+ F SD+ +N
Sbjct: 1157 NETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1216
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S +IT LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1217 LFAVISRHSLSAGLVGLSVSYSLQITAYLNWLVRMSSEMETNIVAVERLKEYSETEKEAS 1276
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
W + + P WP G VEF+DY +RYRE L+LV GIVGRTGAGKSS
Sbjct: 1277 WQIQETAPPSTWPHSGRVEFRDYCLRYREDLDLVLKHINVTIEGGEKVGIVGRTGAGKSS 1336
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIIDG++I +GLH LR ++TIIPQ PV
Sbjct: 1337 LTLGLFRINESAEGEIIIDGINIAKIGLHNLRFKITIIPQ-----------DPV------ 1379
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPI-----Y 341
+F+ ++ + + PF S V + +L L+ VS P
Sbjct: 1380 -------------LFSGSLR-MNLDPF-SQYSDEEVWMALELAHLKGFVSALPDKLNHEC 1424
Query: 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETDDLIQSTIR++F TV
Sbjct: 1425 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDSTV 1482
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG + E +PS L++ + +FYSMAKDAGL
Sbjct: 1483 LTIAHRLNTIMDYTRVIVLDKGEIRECGAPSELLQQRG-VFYSMAKDAGL 1531
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Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Rattus norvegicus (taxid: 10116) |
| >sp|B2RX12|MRP3_MOUSE Canalicular multispecific organic anion transporter 2 OS=Mus musculus GN=Abcc3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 323 bits (828), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 213/529 (40%), Positives = 287/529 (54%), Gaps = 118/529 (22%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G+I+A++ LH +L N + S SFFDTTP GR+++RFS+D+ +D L + +N F
Sbjct: 1032 GAIQAARLLHEALLHNKIRSPQSFFDTTPSGRILNRFSKDIYVIDEVLAPTILMLLNSFF 1091
Query: 65 SV------------LYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
+ L+++ V YGFV + A K L+S+ R SP+F F
Sbjct: 1092 TSISTIMVIVASTPLFMVVVLPLAVLYGFV---QRFYVATSRQLKRLESISR-SPIFSHF 1147
Query: 111 DTTPVG-------------RVLSRFSSDVNTLDNKLTLS--------------------- 136
T G +VLS D N + ++
Sbjct: 1148 SETVTGTSVIRAYGRIQDFKVLSDTKVDNNQKSSYPYIASNRWLGVHVEFVGNCVVLFAA 1207
Query: 137 --------------VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
V ++S ++T LNW++RM SD+E+NI+AVER+KEY +T EA
Sbjct: 1208 LFAVIGRNSLNPGLVGLSVSYALQVTMALNWMIRMISDLESNIIAVERVKEYSKTKTEAP 1267
Query: 183 WV-NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
WV + + WP +G VEF++Y VRYR GLELV GIVGRTGAGKSS
Sbjct: 1268 WVVESNRAPEGWPTRGMVEFRNYSVRYRPGLELVLKNVTVHVQGGEKVGIVGRTGAGKSS 1327
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
+TL LFRI+E A+G I+IDG+++ +GLH LRS+LTIIPQ P+
Sbjct: 1328 MTLCLFRILEAAEGEIVIDGLNVAHIGLHDLRSQLTIIPQ-----------DPI------ 1370
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHFGE 346
+F+ ++ + + PF + + +L L + VS P F
Sbjct: 1371 -------------LFSGTLR-MNLDPF-GRYSEEDIWRALELSHLNTFVSSQPAGLDFQC 1415
Query: 347 TVTGN---VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403
G+ VGQRQL+CLARALLRK+++L+LDEATAAIDLETDDLIQ TIR++F CTVLT
Sbjct: 1416 AEGGDNLSVGQRQLVCLARALLRKSRVLVLDEATAAIDLETDDLIQGTIRTQFEDCTVLT 1475
Query: 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
IAHRLNTI+D +RVLVLDKG+V EFDSP L+ IFY MAKDAGLA
Sbjct: 1476 IAHRLNTIMDYNRVLVLDKGVVAEFDSPVNLIA-AGGIFYGMAKDAGLA 1523
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Mus musculus (taxid: 10090) |
| >sp|Q6UR05|MRP1_CANFA Multidrug resistance-associated protein 1 OS=Canis familiaris GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 221/530 (41%), Positives = 299/530 (56%), Gaps = 122/530 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LH+ +L+N+L S MSFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1040 GGIFASRRLHVDLLQNVLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPQVIKMFMGSLF 1099
Query: 65 S-------VLYLMPVTITV-----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
+ +L P+ + Y FV + A K L+S+ R SP++ F
Sbjct: 1100 NVIGACIIILLATPIASIIIPPLGLIYFFV---QRFYVASSRQLKRLESVSR-SPVYSHF 1155
Query: 111 DTTPVG-RVLSRF--------SSDVNTLDN------------------------------ 131
+ T +G V+ F SD+ +N
Sbjct: 1156 NETLLGVSVIRAFEEQERFIRQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1215
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1216 LFSVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1275
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
W + + P WP+ G VEF+DY +RYRE L+LV GIVGRTGAGKSS
Sbjct: 1276 WQIQEMAPPSTWPQVGRVEFRDYGLRYRENLDLVLKHINITINGGEKVGIVGRTGAGKSS 1335
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIID ++I +GLH LR ++TIIPQ PV
Sbjct: 1336 LTLGLFRINESAEGEIIIDDINIAKIGLHDLRVKITIIPQ-----------DPV------ 1378
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPI-----Y 341
+F+ ++ + + PF S V TS +L L+ VS P
Sbjct: 1379 -------------LFSGSLR-MNLDPF-SQYSDEEVWTSLELAHLKDFVSGLPDKLNQEC 1423
Query: 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETDDLIQSTIR++F CTV
Sbjct: 1424 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFDDCTV 1481
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG + E PS L++ + +FYSMAKDAGL
Sbjct: 1482 LTIAHRLNTIMDYTRVIVLDKGEIRECGQPSDLLQQRG-LFYSMAKDAGL 1530
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Canis familiaris (taxid: 9615) |
| >sp|Q864R9|MRP1_MACFA Multidrug resistance-associated protein 1 OS=Macaca fascicularis GN=ABCC1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 9e-87, Method: Compositional matrix adjust.
Identities = 219/530 (41%), Positives = 299/530 (56%), Gaps = 122/530 (23%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G I AS+ LH+ +L +IL S MSFF+ TP G +++RFS++++TVDS +P ++ ++ LF
Sbjct: 1040 GGILASRCLHVDLLHSILRSPMSFFERTPSGNLVNRFSKELDTVDSMIPEVIKMFMGSLF 1099
Query: 65 SV-------LYLMPVTITV-----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLF--F 110
+V L P+ + Y FV + A K L+S+ R SP++ F
Sbjct: 1100 NVIGACIVILLATPIAAIIIPPLGLIYFFV---QRFYVASSRQLKRLESVSR-SPVYSHF 1155
Query: 111 DTTPVGRVLSR---------FSSDVNTLDN------------------------------ 131
+ T +G + R SD+ +N
Sbjct: 1156 NETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1215
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1216 LFAVISRHSLSAGLVGLSVSYSLQVTTYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1275
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYRE--------------GLELVGIVGRTGAGKSS 227
W + + P WP+ G VEF++Y +RYRE G E VGIVGRTGAGKSS
Sbjct: 1276 WQIQETAPPSNWPQVGRVEFRNYCLRYREDLDFVLRHINVTINGGEKVGIVGRTGAGKSS 1335
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIIDG++I +GLH LR ++TIIPQ PV
Sbjct: 1336 LTLGLFRINESAEGEIIIDGINIARIGLHDLRFKITIIPQ-----------DPV------ 1378
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPI-----Y 341
+F+ ++ + + PF S V TS +L L+ VS P
Sbjct: 1379 -------------LFSGSLR-MNLDPF-SQYSDEEVWTSLELAHLKGFVSALPDKLDHEC 1423
Query: 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
+ GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETDDLIQSTIR++F CTV
Sbjct: 1424 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDDLIQSTIRTQFEDCTV 1481
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG + E+ +PS L++ + +FY+MA+DAGL
Sbjct: 1482 LTIAHRLNTIMDYTRVIVLDKGEIQEYGAPSDLLQQRG-LFYNMARDAGL 1530
|
Mediates export of organic anions and drugs from the cytoplasm. Mediates ATP-dependent transport of glutathione and glutathione conjugates, leukotriene C4, estradiol-17-beta-o-glucuronide, methotrexate, antiviral drugs and other xenobiotics. Confers resistance to anticancer drugs. Hydrolyzes ATP with low efficiency. Macaca fascicularis (taxid: 9541) |
| >sp|O15438|MRP3_HUMAN Canalicular multispecific organic anion transporter 2 OS=Homo sapiens GN=ABCC3 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 317 bits (812), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 213/524 (40%), Positives = 294/524 (56%), Gaps = 112/524 (21%)
Query: 7 IRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSV 66
I+A++ LH +L N + S SFFDTTP GR+++ FS+D+ VD L + +N F+
Sbjct: 1038 IQAARVLHQALLHNKIRSPQSFFDTTPSGRILNCFSKDIYVVDEVLAPVILMLLNSFFNA 1097
Query: 67 LYLMPVTI--TVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTTPV 115
+ + V + T F ++ L L+ AA K L+S+ R SP++ F T
Sbjct: 1098 ISTLVVIMASTPLFTVVILPLAVLYTLVQRFYAATSRQLKRLESVSR-SPIYSHFSETVT 1156
Query: 116 G-------------RVLSRFSSDVNT-------LDNK-LTLSVQ---------------- 138
G ++S D N + N+ L++ V+
Sbjct: 1157 GASVIRAYNRSRDFEIISDTKVDANQRSCYPYIISNRWLSIGVEFVGNCVVLFAALFAVI 1216
Query: 139 -----------QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-ND 186
++S ++T LNW++RM SD+E+NIVAVER+KEY +T EA WV
Sbjct: 1217 GRSSLNPGLVGLSVSYSLQVTFALNWMIRMMSDLESNIVAVERVKEYSKTETEAPWVVEG 1276
Query: 187 KKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLAL 232
+P + WP +GEVEF++Y VRYR GL+LV GIVGRTGAGKSS+TL L
Sbjct: 1277 SRPPEGWPPRGEVEFRNYSVRYRPGLDLVLRDLSLHVHGGEKVGIVGRTGAGKSSMTLCL 1336
Query: 233 FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292
FRI+E A G I IDG+++ +GLH LRS+LTIIPQ P+
Sbjct: 1337 FRILEAAKGEIRIDGLNVADIGLHDLRSQLTIIPQ-----------DPI----------- 1374
Query: 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHFGETVTG- 350
+F+ ++ + + PF S + + + +L L + VS P F + G
Sbjct: 1375 --------LFSGTLR-MNLDPFGSYSEE-DIWWALELSHLHTFVSSQPAGLDFQCSEGGE 1424
Query: 351 --NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
+VGQRQL+CLARALLRK++IL+LDEATAAIDLETD+LIQ+TIR++F CTVLTIAHRL
Sbjct: 1425 NLSVGQRQLVCLARALLRKSRILVLDEATAAIDLETDNLIQATIRTQFDTCTVLTIAHRL 1484
Query: 409 NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
NTI+D RVLVLDKG+V EFDSP+ L+ + IFY MA+DAGLA
Sbjct: 1485 NTIMDYTRVLVLDKGVVAEFDSPANLIAARG-IFYGMARDAGLA 1527
|
May act as an inducible transporter in the biliary and intestinal excretion of organic anions. Acts as an alternative route for the export of bile acids and glucuronides from cholestatic hepatocytes. Homo sapiens (taxid: 9606) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | ||||||
| 383847547 | 1526 | PREDICTED: multidrug resistance-associat | 0.687 | 0.271 | 0.459 | 1e-105 | |
| 270013629 | 1806 | hypothetical protein TcasGA2_TC012253 [T | 0.687 | 0.229 | 0.463 | 1e-103 | |
| 189240635 | 1890 | PREDICTED: similar to AGAP009835-PA [Tri | 0.687 | 0.219 | 0.463 | 1e-103 | |
| 380015470 | 1523 | PREDICTED: LOW QUALITY PROTEIN: multidru | 0.687 | 0.271 | 0.455 | 1e-102 | |
| 242014418 | 1471 | multidrug resistance protein, putative [ | 0.684 | 0.280 | 0.446 | 1e-102 | |
| 328777607 | 1524 | PREDICTED: multidrug resistance-associat | 0.687 | 0.271 | 0.455 | 1e-102 | |
| 45552343 | 1548 | Multidrug-Resistance like protein 1, iso | 0.699 | 0.271 | 0.450 | 1e-101 | |
| 45552363 | 1548 | Multidrug-Resistance like protein 1, iso | 0.699 | 0.271 | 0.450 | 1e-100 | |
| 158298785 | 1877 | AGAP009835-PA [Anopheles gambiae str. PE | 0.692 | 0.222 | 0.465 | 1e-100 | |
| 195351121 | 2042 | GM10053 [Drosophila sechellia] gi|194123 | 0.699 | 0.206 | 0.450 | 1e-100 |
| >gi|383847547|ref|XP_003699414.1| PREDICTED: multidrug resistance-associated protein 1-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 242/527 (45%), Positives = 311/527 (59%), Gaps = 113/527 (21%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G A++ +H+V+LR ++ + ++FFDTTP+GR+ISRF++DV+ +D++LP + I CLF
Sbjct: 1033 GCWLAARQMHIVMLRAVMRAPLTFFDTTPIGRIISRFAKDVDVLDTSLPQQISDSIYCLF 1092
Query: 65 SVLYLMPVTI--TVFFYGFVISLG-------TLFAAKRLHEKLLKSMLRWSPLF--FDTT 113
V+ + V T F ++ +G ++ A K L+S+ R SP++ F T
Sbjct: 1093 EVIATLVVISFSTPIFVAVIVPIGGIYYFVQRMYVASSRQLKRLESISR-SPIYSHFSET 1151
Query: 114 PVGR-------VLSRF-SSDVNTLD----------------------------------- 130
G V RF N +D
Sbjct: 1152 VTGTQMIRAFGVQERFIRESENKVDFNQVCYYPSIIANRWLAVRLEMVGNLIIFFAALFA 1211
Query: 131 --NKLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185
NK T+ V ++S ++TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA W N
Sbjct: 1212 VLNKDTIKSGVVGLSVSYALQVTQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAPWKN 1271
Query: 186 -DKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTL 230
+ P EWP +G VEFKDYKVRYREGLELV GIVGRTGAGKSSLTL
Sbjct: 1272 PNYTPPKEWPVQGTVEFKDYKVRYREGLELVLRGLSFSVKGGEKVGIVGRTGAGKSSLTL 1331
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290
ALFRIIE ADG I ID +DI LGLH LRSRLTIIPQ P+
Sbjct: 1332 ALFRIIEAADGKIFIDDIDIAKLGLHDLRSRLTIIPQ-----------DPI--------- 1371
Query: 291 VLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
+F+ ++ + + PF C + A L+S ++ E
Sbjct: 1372 ----------LFSGTLR-INLDPFNCYTDDEVWRALEH--AHLKSFIKTLPNGLLHEITE 1418
Query: 350 G----NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G ++GQRQLICLARALLRKTK+LILDEATA++DLETDDLIQ+TIR EF+ CTVLTIA
Sbjct: 1419 GGENLSIGQRQLICLARALLRKTKVLILDEATASVDLETDDLIQTTIRQEFSDCTVLTIA 1478
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
HRLNTI+DSDRV+VLDKGL++E+DSP L++N +S+F+++AKDAGLA
Sbjct: 1479 HRLNTILDSDRVIVLDKGLIMEYDSPEALLRNSSSLFHNIAKDAGLA 1525
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270013629|gb|EFA10077.1| hypothetical protein TcasGA2_TC012253 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/526 (46%), Positives = 303/526 (57%), Gaps = 112/526 (21%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G AS LH V+LR +L + M FFDTTP+GR++ RFS+DVET+DS+LP + + CLF
Sbjct: 1313 GCCYASIALHQVMLRGVLRAPMLFFDTTPLGRILGRFSRDVETMDSSLPWGMTDGVYCLF 1372
Query: 65 SVLYLMPV--TITVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTT 113
VL + V T F ++ +G L+ A K L+S+ R SP++ F T
Sbjct: 1373 EVLGTLVVISVSTPIFIAVIVPIGILYYFIQRFYVATSRQLKRLESVSR-SPIYSHFGET 1431
Query: 114 PVG-------RVLSRFSS------DVNTL------------------------------- 129
G R RF DVN +
Sbjct: 1432 ITGVQAIRAFREQDRFIKESEHRVDVNQVCYYPSIISNRWLAVRLEMIGNLIIFFAALFS 1491
Query: 130 -----DNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW- 183
+++ V +++ +ITQTLNWLVRMTSDVETNIVAVERIKEYGE PQEA W
Sbjct: 1492 VLGRDESQNAGLVGLSVTYSLQITQTLNWLVRMTSDVETNIVAVERIKEYGEAPQEAPWE 1551
Query: 184 VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
+ +K P +WPE G V+F Y VRYR GL+LV GIVGRTGAGKSSLT
Sbjct: 1552 IPNKAPSPQWPENGTVQFNKYAVRYRPGLDLVLKGVNFSINGGEKVGIVGRTGAGKSSLT 1611
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A+G I+IDGV+I LGLHTLRSRLTIIP
Sbjct: 1612 LALFRIIEAAEGEILIDGVNIADLGLHTLRSRLTIIP----------------------- 1648
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
Q +++F+ ++ + + PF + V + + L+S + E
Sbjct: 1649 -------QDAVLFSGTLR-MNLDPFDKHSDE-EVWKALEHAHLKSFVKGLTAGLHHEVTE 1699
Query: 350 G----NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G +VGQRQLICL+RALLRKTK+LILDEATAA+DLETDDLIQ TIRSEF +CTVLTIA
Sbjct: 1700 GGENLSVGQRQLICLSRALLRKTKVLILDEATAAVDLETDDLIQKTIRSEFKNCTVLTIA 1759
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
HRLNTI+DSDRV+VLD G +VEFDSPS L+K + SIFYSM KDAGL
Sbjct: 1760 HRLNTIMDSDRVVVLDNGRIVEFDSPSNLLKQQQSIFYSMCKDAGL 1805
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|189240635|ref|XP_969354.2| PREDICTED: similar to AGAP009835-PA [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 244/526 (46%), Positives = 303/526 (57%), Gaps = 112/526 (21%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G AS LH V+LR +L + M FFDTTP+GR++ RFS+DVET+DS+LP + + CLF
Sbjct: 1397 GCCYASIALHQVMLRGVLRAPMLFFDTTPLGRILGRFSRDVETMDSSLPWGMTDGVYCLF 1456
Query: 65 SVLYLMPV--TITVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTT 113
VL + V T F ++ +G L+ A K L+S+ R SP++ F T
Sbjct: 1457 EVLGTLVVISVSTPIFIAVIVPIGILYYFIQRFYVATSRQLKRLESVSR-SPIYSHFGET 1515
Query: 114 PVG-------RVLSRFSS------DVNTL------------------------------- 129
G R RF DVN +
Sbjct: 1516 ITGVQAIRAFREQDRFIKESEHRVDVNQVCYYPSIISNRWLAVRLEMIGNLIIFFAALFS 1575
Query: 130 -----DNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW- 183
+++ V +++ +ITQTLNWLVRMTSDVETNIVAVERIKEYGE PQEA W
Sbjct: 1576 VLGRDESQNAGLVGLSVTYSLQITQTLNWLVRMTSDVETNIVAVERIKEYGEAPQEAPWE 1635
Query: 184 VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
+ +K P +WPE G V+F Y VRYR GL+LV GIVGRTGAGKSSLT
Sbjct: 1636 IPNKAPSPQWPENGTVQFNKYAVRYRPGLDLVLKGVNFSINGGEKVGIVGRTGAGKSSLT 1695
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A+G I+IDGV+I LGLHTLRSRLTIIP
Sbjct: 1696 LALFRIIEAAEGEILIDGVNIADLGLHTLRSRLTIIP----------------------- 1732
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
Q +++F+ ++ + + PF + V + + L+S + E
Sbjct: 1733 -------QDAVLFSGTLR-MNLDPFDKHSDE-EVWKALEHAHLKSFVKGLTAGLHHEVTE 1783
Query: 350 G----NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G +VGQRQLICL+RALLRKTK+LILDEATAA+DLETDDLIQ TIRSEF +CTVLTIA
Sbjct: 1784 GGENLSVGQRQLICLSRALLRKTKVLILDEATAAVDLETDDLIQKTIRSEFKNCTVLTIA 1843
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
HRLNTI+DSDRV+VLD G +VEFDSPS L+K + SIFYSM KDAGL
Sbjct: 1844 HRLNTIMDSDRVVVLDNGRIVEFDSPSNLLKQQQSIFYSMCKDAGL 1889
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380015470|ref|XP_003691724.1| PREDICTED: LOW QUALITY PROTEIN: multidrug resistance-associated protein 1-like [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/527 (45%), Positives = 311/527 (59%), Gaps = 113/527 (21%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G A++ +H+++LR ++ + ++FFDTTP GR+ISRF++DV+ +D++LP + I CLF
Sbjct: 1030 GCWLAARQMHIMMLRVVMRAPLTFFDTTPTGRIISRFAKDVDVLDTSLPQQISDSIYCLF 1089
Query: 65 SV---LYLMPVTITVFFYGFVISLGTLFAAKRLHE------KLLKSMLRWSPLF--FDTT 113
V L ++ + +F + + +RL+ K L+S+ R SP++ F T
Sbjct: 1090 EVIATLVVISFSTPIFISVIIPISVIYYFVQRLYVASSRQLKRLESVSR-SPIYSHFSET 1148
Query: 114 PVG-----------RVLSRFSSDVN----------------------------------T 128
G R ++ S V+
Sbjct: 1149 VSGAQMIRAFGVQERFINESESKVDFNQVCYYPSIIANRWLAVRLEMVGNLIIFFAALFA 1208
Query: 129 LDNKLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185
+ NK T+S V ++S ++TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA W N
Sbjct: 1209 VLNKDTVSSGLVGLSVSYALQVTQTLNWLVRMTSDVETNIVAVERIKEYGETPQEASWKN 1268
Query: 186 -DKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTL 230
D P EWP +G VEFKDYKVRYRE LELV GIVGRTGAGKSSLTL
Sbjct: 1269 PDYTPPKEWPVQGRVEFKDYKVRYREDLELVLRGLSFSIKGGEKVGIVGRTGAGKSSLTL 1328
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290
ALFRIIE ADG I ID +DI LGLH LRSRLTIIPQ PV
Sbjct: 1329 ALFRIIEAADGQIFIDDIDIAKLGLHDLRSRLTIIPQ-----------DPV--------- 1368
Query: 291 VLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QLKR-LESVSRSPIY--SHFG 345
+F+ ++ + + PF C + A LK ++++ +Y S G
Sbjct: 1369 ----------LFSGSLR-INLDPFNCYTDDEVWRALEHAHLKSFIKNLPNGLLYEVSEGG 1417
Query: 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
E ++ +GQRQLICLARALLRKTK+LILDEATA++DLETDDLIQ TIR EF CT+LTIA
Sbjct: 1418 ENLS--IGQRQLICLARALLRKTKVLILDEATASVDLETDDLIQQTIRQEFKDCTILTIA 1475
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
HRLNTI+DSDR++VLD G +VE+DSP L++N +S+F S+AKDAGLA
Sbjct: 1476 HRLNTILDSDRIIVLDNGRIVEYDSPESLLRNSSSLFSSIAKDAGLA 1522
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014418|ref|XP_002427888.1| multidrug resistance protein, putative [Pediculus humanus corporis] gi|212512357|gb|EEB15150.1| multidrug resistance protein, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 236/529 (44%), Positives = 299/529 (56%), Gaps = 117/529 (22%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G + A++ LH L ++ S FFD TP+GR+++RFS+DV+T+DS LP +R W+ C F
Sbjct: 970 GCLSAARILHGSTLHGVVRSPNGFFDVTPLGRVLNRFSKDVDTLDSILPMTIRGWLTCFF 1029
Query: 65 SVLYLMPVTI--TVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTT 113
SVL ++ V + +F +I +G L+ A K ++S+ R SP++ F T
Sbjct: 1030 SVLGMVVVVSYSSQWFIAVIIPIGILYYFIQRFYVATSRQLKRIESISR-SPIYSHFGET 1088
Query: 114 PVG----RVLSRFSSDVNTLDNKLTLS--------------------------------- 136
G R +N ++KL ++
Sbjct: 1089 VTGVSTIRAYQAQQRFINESESKLDINQICYYPSLIANRWLAVRLETIGSLIIFFSALFG 1148
Query: 137 -VQQTLSQP------------FKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183
+ + + P ++TQTLNWLVRMTSDVETNIV+VERIKEYGE P EAEW
Sbjct: 1149 VISKAVGNPQANLVGLSVTYAMQVTQTLNWLVRMTSDVETNIVSVERIKEYGEIPHEAEW 1208
Query: 184 VNDK-KPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSL 228
N P WP KG+VEFKDY RYREGL+LV GIVGRTGAGKSSL
Sbjct: 1209 RNPNFIPDKNWPSKGKVEFKDYMTRYREGLDLVLCGVNFTVDGGEKIGIVGRTGAGKSSL 1268
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288
TLALFRIIE + G I IDG+DI +GLH LR RLTIIPQ P+
Sbjct: 1269 TLALFRIIEASSGKIFIDGIDISKVGLHDLRGRLTIIPQ-----------DPI------- 1310
Query: 289 VSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGE 346
+F+ ++ + + PF C++ + + + +L L++ S E
Sbjct: 1311 ------------LFSGTIR-MNLDPFMQCTDQE---IWKALELAHLKTFVMSQSLKLDHE 1354
Query: 347 TVTG----NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402
G +VGQRQLICLARALLRKTKIL+LDEATAA+DLETDDLIQ+TIR EF CTVL
Sbjct: 1355 ITEGGDNLSVGQRQLICLARALLRKTKILVLDEATAAVDLETDDLIQNTIRREFKECTVL 1414
Query: 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TIAHRLNTI+DSDRVLVLDKGLV EFDSP LM SIFY M KDAG+
Sbjct: 1415 TIAHRLNTILDSDRVLVLDKGLVAEFDSPQKLMSQPDSIFYKMLKDAGI 1463
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328777607|ref|XP_003249371.1| PREDICTED: multidrug resistance-associated protein 1-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 240/527 (45%), Positives = 311/527 (59%), Gaps = 113/527 (21%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G A++ +H+++LR ++ + ++FFDTTP GR+ISRF++DV+ +D++LP + I CLF
Sbjct: 1031 GCWLAARQMHIMMLRVVMRAPLTFFDTTPTGRIISRFAKDVDVLDTSLPQQISDSIYCLF 1090
Query: 65 SV---LYLMPVTITVFFYGFVISLGTLFAAKRLHE------KLLKSMLRWSPLF--FDTT 113
V L ++ + +F + + +RL+ K L+S+ R SP++ F T
Sbjct: 1091 EVIATLVVISFSTPIFISVIIPISVIYYFVQRLYVASSRQLKRLESVSR-SPIYSHFSET 1149
Query: 114 PVG-----------RVLSRFSSDVN----------------------------------T 128
G R ++ S V+
Sbjct: 1150 VSGAQMIRAFGVQERFINESESKVDFNQVCYYPSIIANRWLAVRLEMVGNLIIFFAALFA 1209
Query: 129 LDNKLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185
+ NK T+S V ++S ++TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA W N
Sbjct: 1210 VLNKDTVSSGLVGLSVSYALQVTQTLNWLVRMTSDVETNIVAVERIKEYGETPQEASWKN 1269
Query: 186 -DKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTL 230
D P EWP +G VEFKDYKVRYRE LELV GIVGRTGAGKSSLTL
Sbjct: 1270 PDYIPPKEWPVQGRVEFKDYKVRYREDLELVLRGLSFSIKGGEKVGIVGRTGAGKSSLTL 1329
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290
ALFRIIE ADG I ID +DI LGLH LRSRLTIIPQ PV
Sbjct: 1330 ALFRIIEAADGQIFIDDIDIAKLGLHDLRSRLTIIPQ-----------DPV--------- 1369
Query: 291 VLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QLKR-LESVSRSPIY--SHFG 345
+F+ ++ + + PF C + A LK ++++ +Y S G
Sbjct: 1370 ----------LFSGSLR-INLDPFNCYTDDEVWRALEHAHLKSFIKTLPNGLLYEVSEGG 1418
Query: 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
E ++ +GQRQLICLARALLRKTK+LILDEATA++DLETDDLIQ TIR EF CT+LTIA
Sbjct: 1419 ENLS--IGQRQLICLARALLRKTKVLILDEATASVDLETDDLIQQTIRQEFKDCTILTIA 1476
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
HRLNTI+DSDR++VLD G +VE+DSP L++N +S+F S+AKDAGLA
Sbjct: 1477 HRLNTILDSDRIIVLDNGRIVEYDSPESLLRNSSSLFSSIAKDAGLA 1523
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|45552343|ref|NP_995694.1| Multidrug-Resistance like protein 1, isoform H [Drosophila melanogaster] gi|45445110|gb|AAS64692.1| Multidrug-Resistance like protein 1, isoform H [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 235/522 (45%), Positives = 307/522 (58%), Gaps = 101/522 (19%)
Query: 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINC 62
A GS+ A+K LH ++L N+L + M+ FDTTPVGR++SRFS+DVE+VD +P + I C
Sbjct: 1054 ALGSLHAAKVLHSMLLENVLRAPMTMFDTTPVGRILSRFSKDVESVDQKMPQVINDCIWC 1113
Query: 63 LFSVLYLMPVTI--TVFFYGFVISLGTLFA-AKRLHEKLLKSMLRW-----SPLF--FDT 112
F VL + V T F ++ + L+ A+R + + ++R SP++ F
Sbjct: 1114 AFEVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSE 1173
Query: 113 TPVG-------RVLSRF--SSDVNTLDNKLT----------LSVQ--------------- 138
T G V RF SD N++ L+++
Sbjct: 1174 TVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLF 1233
Query: 139 -----QT--------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV- 184
QT +S ++TQTLNWLVRM+SD+ETNIV+VERIKEYGET QEA W
Sbjct: 1234 AVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWEL 1293
Query: 185 -NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
DK WP++G VEF++++VRYREGL+LV GIVGRTGAGKSSLT
Sbjct: 1294 EQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLT 1353
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A G I IDGVDI ++GLH LRSRLTIIPQ PV + +
Sbjct: 1354 LALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQ-----------DPVLFSGSLRI 1402
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
++ F I+ E K L ++ S ++ + ++ + GE ++
Sbjct: 1403 NLDPFEIKTD---DEIWKALELSHLKSFVKSLAAGLNHEI------------AEGGENLS 1447
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
VGQRQL+CLARALLRKTK+L+LDEATAA+DLETDDLIQ TIR+EF CTVLTIAHRLN
Sbjct: 1448 --VGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFKECTVLTIAHRLN 1505
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TI+DSD+V+VLDKG ++EF SP+ L+ N S FYSMAKDA L
Sbjct: 1506 TILDSDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAKDANL 1547
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|45552363|ref|NP_995704.1| Multidrug-Resistance like protein 1, isoform M [Drosophila melanogaster] gi|45445117|gb|AAS64699.1| Multidrug-Resistance like protein 1, isoform M [Drosophila melanogaster] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 235/522 (45%), Positives = 307/522 (58%), Gaps = 101/522 (19%)
Query: 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINC 62
A GS+ A+K LH ++L N+L + M+ FDTTPVGR++SRFS+DVE+VD +P + I C
Sbjct: 1054 ALGSLHAAKVLHSMLLENVLRAPMTMFDTTPVGRILSRFSKDVESVDQKMPQVINDCIWC 1113
Query: 63 LFSVLYLMPVTI--TVFFYGFVISLGTLFA-AKRLHEKLLKSMLRW-----SPLF--FDT 112
F VL + V T F ++ + L+ A+R + + ++R SP++ F
Sbjct: 1114 AFEVLATIVVISLSTPIFLAVIVPIAFLYYFAQRFYVATSRQLMRLESVSRSPIYSHFSE 1173
Query: 113 TPVG-------RVLSRF--SSDVNTLDNKLT----------LSVQ--------------- 138
T G V RF SD N++ L+++
Sbjct: 1174 TVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLF 1233
Query: 139 -----QT--------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV- 184
QT +S ++TQTLNWLVRM+SD+ETNIV+VERIKEYGET QEA W
Sbjct: 1234 AVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWEL 1293
Query: 185 -NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
DK WP++G VEF++++VRYREGL+LV GIVGRTGAGKSSLT
Sbjct: 1294 EQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLT 1353
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A G I IDGVDI ++GLH LRSRLTIIPQ PV + +
Sbjct: 1354 LALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQ-----------DPVLFSGSLRI 1402
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
++ F I+ E K L ++ S ++ + ++ + GE ++
Sbjct: 1403 NLDPFEIKTD---DEIWKALELSHLKSFVKSLAAGLNHEI------------AEGGENLS 1447
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
VGQRQL+CLARALLRKTK+L+LDEATAA+DLETDDLIQ TIR+EF CTVLTIAHRLN
Sbjct: 1448 --VGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFKECTVLTIAHRLN 1505
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TI+DSD+V+VLDKG ++EF SP+ L+ N S FYSMAKDA L
Sbjct: 1506 TILDSDKVIVLDKGQIIEFASPTELLDNPKSAFYSMAKDANL 1547
|
Source: Drosophila melanogaster Species: Drosophila melanogaster Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|158298785|ref|XP_553715.3| AGAP009835-PA [Anopheles gambiae str. PEST] gi|157014052|gb|EAL39215.3| AGAP009835-PA [Anopheles gambiae str. PEST] | Back alignment and taxonomy information |
|---|
Score = 374 bits (959), Expect = e-100, Method: Compositional matrix adjust.
Identities = 243/522 (46%), Positives = 303/522 (58%), Gaps = 105/522 (20%)
Query: 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLF 64
G A+ +H ++L N+LH M FFDTTP+GR++ RFS+DV+ +D LP L WI C
Sbjct: 1385 GCWAAAVRVHKLLLTNVLHLPMDFFDTTPIGRILQRFSKDVDVLDVKLPGLLLDWIICAI 1444
Query: 65 SVLY-LMPVTI-TVFFYGFVISLGTLF-AAKRLHE------KLLKSMLRWSPLF--FDTT 113
V+ L+ ++I T F ++ +G L+ A +R + K L+S+ R SP++ F T
Sbjct: 1445 EVVATLVVISISTPIFAAVIVPIGILYYAVQRFYVATSRQLKRLESVSR-SPIYSHFGET 1503
Query: 114 PVG-------RVLSRF--SSDVNTLDNKLTLS---------------------------- 136
G V RF SD N+L
Sbjct: 1504 IQGVQTIRAYSVQDRFILESDEKVDGNQLCYCPSIIANRWLAVRLEMVGNLIILFAALFA 1563
Query: 137 -----------VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV- 184
V ++S +ITQTLNWLVRMTSDVETNIVAVERIKEYGET QEA W
Sbjct: 1564 VLGRETMNAGLVGLSVSYALQITQTLNWLVRMTSDVETNIVAVERIKEYGETKQEAAWEL 1623
Query: 185 -NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
N P+D WPE+G VEF+D++VRYREGLELV GIVGRTGAGKSSLT
Sbjct: 1624 PNSTLPRD-WPEQGMVEFRDFQVRYREGLELVLRGISFTVNGGEKVGIVGRTGAGKSSLT 1682
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A G+I+IDG DI LGLH LRSRLTIIPQ PV + +
Sbjct: 1683 LALFRIIESAGGSIVIDGQDISQLGLHALRSRLTIIPQ-----------DPVLFSGTLRI 1731
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
++ F Q + ++ + F L + + + GE ++
Sbjct: 1732 NLDPFNAQSDDDIWKALEHAHLKTFVKGL---------------TAGINHEVTEGGENLS 1776
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
VGQRQLICLARALLRKTK+LILDEATAA+DLETDDLIQ TIR+EF CTVLTIAHRLN
Sbjct: 1777 --VGQRQLICLARALLRKTKVLILDEATAAVDLETDDLIQRTIRTEFKDCTVLTIAHRLN 1834
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TI+DSD+V+VLDKG +VEF P+ L+++K S FYSMAKDAGL
Sbjct: 1835 TIMDSDKVIVLDKGQIVEFAPPAELLQSKNSAFYSMAKDAGL 1876
|
Source: Anopheles gambiae str. PEST Species: Anopheles gambiae Genus: Anopheles Family: Culicidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|195351121|ref|XP_002042085.1| GM10053 [Drosophila sechellia] gi|194123909|gb|EDW45952.1| GM10053 [Drosophila sechellia] | Back alignment and taxonomy information |
|---|
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 235/522 (45%), Positives = 306/522 (58%), Gaps = 101/522 (19%)
Query: 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINC 62
A GS+ A+K LH ++L N+L + M+ FDTTPVGR++SRFS+DVE+VD +P + I C
Sbjct: 1548 ALGSLHAAKVLHSMLLENVLRAPMTMFDTTPVGRILSRFSKDVESVDQKMPQVINDCIWC 1607
Query: 63 LFSVLYLMPVTI--TVFFYGFVISLGTLF-AAKRLHEKLLKSMLRW-----SPLF--FDT 112
F VL + V T F ++ + L+ A+R + + ++R SP++ F
Sbjct: 1608 AFEVLATIVVISLSTPIFLAVIVPIAFLYYVAQRFYVATSRQLMRLESVSRSPIYSHFSE 1667
Query: 113 TPVG-------RVLSRF--SSDVNTLDNKLT----------LSVQ--------------- 138
T G V RF SD N++ L+++
Sbjct: 1668 TVTGASTIRAYNVGDRFIEESDAKVDKNQVCKYPSVIANRWLAIRLEMVGNLIILFASLF 1727
Query: 139 -----QT--------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV- 184
QT +S ++TQTLNWLVRM+SD+ETNIV+VERIKEYGET QEA W
Sbjct: 1728 AVLGGQTNPGLVGLSVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWEL 1787
Query: 185 -NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLT 229
DK WP++G VEF++++VRYREGL+LV GIVGRTGAGKSSLT
Sbjct: 1788 EQDKNKPKNWPQEGRVEFQNFQVRYREGLDLVLRGVSFNIKGGEKVGIVGRTGAGKSSLT 1847
Query: 230 LALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289
LALFRIIE A G I IDGVDI ++GLH LRSRLTIIPQ PV + +
Sbjct: 1848 LALFRIIEAAGGRISIDGVDIASMGLHMLRSRLTIIPQ-----------DPVLFSGSLRI 1896
Query: 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349
++ F I+ E K L ++ S ++ + ++ + GE ++
Sbjct: 1897 NLDPFEIKTD---DEIWKALELSHLKSFVKSLAAGLNHEI------------AEGGENLS 1941
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409
VGQRQL+CLARALLRKTK+L+LDEATAA+DLETDDLIQ TIR+EF CTVLTIAHRLN
Sbjct: 1942 --VGQRQLVCLARALLRKTKVLVLDEATAAVDLETDDLIQKTIRTEFKECTVLTIAHRLN 1999
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
TI+DSD+V+VLDKG + EF SP+ L+ N S FYSMAKDA L
Sbjct: 2000 TILDSDKVIVLDKGQITEFASPTELLDNPKSAFYSMAKDANL 2041
|
Source: Drosophila sechellia Species: Drosophila sechellia Genus: Drosophila Family: Drosophilidae Order: Diptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 602 | ||||||
| ZFIN|ZDB-GENE-040426-1523 | 1567 | abcc2 "ATP-binding cassette, s | 0.496 | 0.190 | 0.427 | 1.1e-62 | |
| FB|FBgn0032456 | 1549 | MRP "Multidrug-Resistance like | 0.210 | 0.081 | 0.662 | 2.4e-90 | |
| UNIPROTKB|F1PHV0 | 1544 | ABCC2 "Uncharacterized protein | 0.267 | 0.104 | 0.541 | 5.6e-88 | |
| MGI|MGI:1352447 | 1543 | Abcc2 "ATP-binding cassette, s | 0.227 | 0.088 | 0.611 | 8.1e-88 | |
| UNIPROTKB|Q28689 | 1564 | ABCC2 "Canalicular multispecif | 0.490 | 0.188 | 0.390 | 3.5e-50 | |
| RGD|2366 | 1541 | Abcc2 "ATP-binding cassette, s | 0.210 | 0.082 | 0.602 | 1.1e-83 | |
| UNIPROTKB|F1NM51 | 1534 | ABCC3 "Uncharacterized protein | 0.212 | 0.083 | 0.601 | 1.2e-82 | |
| MGI|MGI:102676 | 1528 | Abcc1 "ATP-binding cassette, s | 0.196 | 0.077 | 0.661 | 2.1e-65 | |
| RGD|3112 | 1532 | Abcc1 "ATP-binding cassette, s | 0.196 | 0.077 | 0.652 | 5.5e-66 | |
| UNIPROTKB|F1M7Y0 | 1533 | Abcc1 "Multidrug resistance-as | 0.196 | 0.076 | 0.652 | 5.6e-66 |
| ZFIN|ZDB-GENE-040426-1523 abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 1.1e-62, Sum P(2) = 1.1e-62
Identities = 144/337 (42%), Positives = 193/337 (57%)
Query: 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351
L+ + IFT V P+ + + +QRFYVATSRQL+RL+SVSRSPIYSHFGETV+G
Sbjct: 1131 LFVICLATPIFTAVVVPMAVVYYF--VQRFYVATSRQLRRLDSVSRSPIYSHFGETVSGL 1188
Query: 352 VGQRQLICLARAL----------LRKTKILILDEATAAIDLET-DDLIQ------STIRS 394
R R L L+ I+ A+ LE+ +L+ + I
Sbjct: 1189 SVIRAYGHQDRFLKHNEDTIDQNLKSVYPWIVSNRWLAMRLESLGNLVVFFAALFAVISR 1248
Query: 395 EFAHCTV--LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
+ + + L+I++ LN + + LV + E ++ +++ + + + +A
Sbjct: 1249 DSLNSGLVGLSISYALN-VTQTLNWLVR---MTSELET-NIVAVERVREYAEIQNEA--P 1301
Query: 453 WL-AVR----LETVGNLITFSAALLAVLSKETLNAGLVGLS--VSYAMQVGIVGRTGAGK 505
W+ +VR + GN I F V + L L G++ + ++GIVGRTGAGK
Sbjct: 1302 WVTSVRPPDDWPSAGN-IRFED--YKVRYRPELELVLHGVTCDIQSTEKIGIVGRTGAGK 1358
Query: 506 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGE 565
SSLT LFRI+E ADG I+ID +DI TLGLH LRSRLTIIPQDPVLFSGTLR+NLDP
Sbjct: 1359 SSLTNCLFRIVEAADGRILIDDIDIATLGLHDLRSRLTIIPQDPVLFSGTLRMNLDPFQT 1418
Query: 566 SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
SD IW LELAHL +V LP L+HEVSEGGENL
Sbjct: 1419 FSDAEIWSVLELAHLKEYVRGLPTGLEHEVSEGGENL 1455
|
|
| FB|FBgn0032456 MRP "Multidrug-Resistance like Protein 1" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 441 (160.3 bits), Expect = 2.4e-90, Sum P(3) = 2.4e-90
Identities = 96/145 (66%), Positives = 113/145 (77%)
Query: 140 TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV--NDK-KPKDEWPEK 196
++S ++TQTLNWLVRM+SD+ETNIV+VERIKEYGET QEA W DK KPK+ WP++
Sbjct: 1249 SVSYALQVTQTLNWLVRMSSDIETNIVSVERIKEYGETKQEAPWELEQDKNKPKN-WPQE 1307
Query: 197 GEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGT 242
G VEF++++VRYREGL+LV GIVGRTGAGKSSLTLALFRIIE A G
Sbjct: 1308 GRVEFQNFQVRYREGLDLVLRGVSFNIQGGEKVGIVGRTGAGKSSLTLALFRIIEAAGGR 1367
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQ 267
I IDGVDI ++GLH LRSRLTIIPQ
Sbjct: 1368 ISIDGVDIASMGLHMLRSRLTIIPQ 1392
|
|
| UNIPROTKB|F1PHV0 ABCC2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 426 (155.0 bits), Expect = 5.6e-88, Sum P(3) = 5.6e-88
Identities = 98/181 (54%), Positives = 118/181 (65%)
Query: 104 RWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLS---VQQTLSQPFKITQTLNWLVRMTSD 160
RW + + +G ++ FSS + + K TLS V LS ITQTLNWLVRMTS+
Sbjct: 1204 RWLAVRLEL--IGNLIVFFSSLMMVI-YKATLSGDTVGFVLSNALNITQTLNWLVRMTSE 1260
Query: 161 VETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELV----- 215
+ETNIVAVERI EY + EA WV DK+P WP KGE+ F +Y+VRYR L+LV
Sbjct: 1261 IETNIVAVERINEYIKVENEAPWVTDKRPPPGWPSKGEIRFNNYQVRYRPELDLVLRGIT 1320
Query: 216 ---------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
G+VGRTGAGKSSLT LFRI+E A G IIIDGVDI ++GLH LR +LTIIP
Sbjct: 1321 CDIRSMEKIGVVGRTGAGKSSLTNGLFRILEAAGGQIIIDGVDIASIGLHDLREKLTIIP 1380
Query: 267 Q 267
Q
Sbjct: 1381 Q 1381
|
|
| MGI|MGI:1352447 Abcc2 "ATP-binding cassette, sub-family C (CFTR/MRP), member 2" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 428 (155.7 bits), Expect = 8.1e-88, Sum P(3) = 8.1e-88
Identities = 93/152 (61%), Positives = 107/152 (70%)
Query: 131 NKLTL-SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKP 189
N LT +V LS ITQTLNWLVRMTS+VETNIVAVERI EY EA WV DKKP
Sbjct: 1229 NSLTGDTVGFVLSNALNITQTLNWLVRMTSEVETNIVAVERINEYINVDNEAPWVTDKKP 1288
Query: 190 KDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRI 235
+WP+KGE++F +Y+VRYR L+LV G+VGRTGAGKSSLT LFRI
Sbjct: 1289 PADWPKKGEIQFNNYQVRYRPELDLVLKGITCNIKSTEKVGVVGRTGAGKSSLTNCLFRI 1348
Query: 236 IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
+E A G IIIDG+DI ++GLH LR RLTIIPQ
Sbjct: 1349 LESAGGQIIIDGIDIASIGLHDLRGRLTIIPQ 1380
|
|
| UNIPROTKB|Q28689 ABCC2 "Canalicular multispecific organic anion transporter 1" [Oryctolagus cuniculus (taxid:9986)] | Back alignment and assigned GO terms |
|---|
Score = 431 (156.8 bits), Expect = 3.5e-50, Sum P(2) = 3.5e-50
Identities = 126/323 (39%), Positives = 178/323 (55%)
Query: 301 IFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG----NVGQRQ 356
+F + PL I +Q FYVATSRQL+RL+SV+RSPIYSHF ETV+G + Q
Sbjct: 1120 VFAVIIIPLAIIYVA--VQVFYVATSRQLRRLDSVTRSPIYSHFTETVSGLPVIRAFEHQ 1177
Query: 357 LICLAR---ALLRKTKIL---ILDEATAAIDLE-TDDLI--QSTIRSEFAHCTVL--TIA 405
L + + K + I A LE +L+ S + T+ +
Sbjct: 1178 QRFLKQNEIGIDTNQKCVSSWITSNRWLAFRLELVGNLVVFSSALMMVIYRDTLSGDVVG 1237
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVG--- 462
L+ ++ + L + E ++ +++ + + + + +A W+ + G
Sbjct: 1238 FVLSNALNITQTLNWLVRMTSETET-NIVAVERITEYIKVENEA--PWVTDKRPPAGWPH 1294
Query: 463 -NLITFSAALLAVLSKETLNAGLVGLSVSY-AMQ-VGIVGRTGAGKSSLTLALFRIIEPA 519
I FS V + L+ L G++ +M+ +G+VGRTGAGKSSLT LFRI+E A
Sbjct: 1295 KGEIQFSN--YQVRYRPELDLVLKGINCDIKSMEKIGVVGRTGAGKSSLTNCLFRILEAA 1352
Query: 520 DGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAH 579
G I IDG+DI ++GLH LR +LTIIPQDPVLFSG+LR+NLDP SDE IW+ALELAH
Sbjct: 1353 GGHITIDGIDIASIGLHDLRGKLTIIPQDPVLFSGSLRMNLDPFNNYSDEEIWRALELAH 1412
Query: 580 LNTFVSNLPARLQHEVSEGGENL 602
L +FV+ L L EVSE +NL
Sbjct: 1413 LKSFVAGLQHGLSREVSEAEDNL 1435
|
|
| RGD|2366 Abcc2 "ATP-binding cassette, subfamily C (CFTR/MRP), member 2" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 411 (149.7 bits), Expect = 1.1e-83, Sum P(3) = 1.1e-83
Identities = 85/141 (60%), Positives = 99/141 (70%)
Query: 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVE 200
LS ITQTLNWLVRMTS+ ETNIVAVERI EY EA WV DK+P +WP GE++
Sbjct: 1238 LSNALNITQTLNWLVRMTSEAETNIVAVERISEYINVENEAPWVTDKRPPADWPRHGEIQ 1297
Query: 201 FKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
F +Y+VRYR L+LV G+VGRTGAGKSSLT LFRI+E A G IIID
Sbjct: 1298 FNNYQVRYRPELDLVLKGITCNIKSGEKVGVVGRTGAGKSSLTNCLFRILESAGGQIIID 1357
Query: 247 GVDIRTLGLHTLRSRLTIIPQ 267
G+D+ ++GLH LR RLTIIPQ
Sbjct: 1358 GIDVASIGLHDLRERLTIIPQ 1378
|
|
| UNIPROTKB|F1NM51 ABCC3 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 407 (148.3 bits), Expect = 1.2e-82, Sum P(3) = 1.2e-82
Identities = 86/143 (60%), Positives = 102/143 (71%)
Query: 140 TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-NDKKPKDEWPEKGE 198
++S ++T LNW+VR TSD+ETNIVAVERIKEY ET EA W+ DK+P +WP +GE
Sbjct: 1236 SVSYALQVTMALNWMVRTTSDLETNIVAVERIKEYSETETEAPWIIEDKRPPADWPSRGE 1295
Query: 199 VEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGTII 244
+EF Y VRYR+GL+LV GIVGRTGAGKSS+TL LFRI+E A G I
Sbjct: 1296 LEFVGYSVRYRKGLDLVLKDLNLRVHGGEKIGIVGRTGAGKSSMTLCLFRILEAAKGEIR 1355
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQ 267
IDGV I +GLH LRSRLTIIPQ
Sbjct: 1356 IDGVRISEIGLHDLRSRLTIIPQ 1378
|
|
| MGI|MGI:102676 Abcc1 "ATP-binding cassette, sub-family C (CFTR/MRP), member 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 399 (145.5 bits), Expect = 2.1e-65, Sum P(4) = 2.1e-65
Identities = 78/118 (66%), Positives = 94/118 (79%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ +VGIVGRTGAGKSSLTL LFRI E A+G IIIDGV+I +GLH LR ++TI
Sbjct: 1310 INVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGVNIAKIGLHNLRFKITI 1369
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDPVLFSG+LR+NLDP + SDE +W ALELAHL FVS LP +L HE +EGGENL
Sbjct: 1370 IPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1427
|
|
| RGD|3112 Abcc1 "ATP-binding cassette, subfamily C (CFTR/MRP), member 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 5.5e-66, Sum P(4) = 5.5e-66
Identities = 77/118 (65%), Positives = 94/118 (79%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ +VGIVGRTGAGKSSLTL LFRI E A+G IIIDG++I +GLH LR ++TI
Sbjct: 1314 INVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLRFKITI 1373
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDPVLFSG+LR+NLDP + SDE +W ALELAHL FVS LP +L HE +EGGENL
Sbjct: 1374 IPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1431
|
|
| UNIPROTKB|F1M7Y0 Abcc1 "Multidrug resistance-associated protein 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 398 (145.2 bits), Expect = 5.6e-66, Sum P(4) = 5.6e-66
Identities = 77/118 (65%), Positives = 94/118 (79%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ +VGIVGRTGAGKSSLTL LFRI E A+G IIIDG++I +GLH LR ++TI
Sbjct: 1315 INVTIEGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGINIAKIGLHNLRFKITI 1374
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDPVLFSG+LR+NLDP + SDE +W ALELAHL FVS LP +L HE +EGGENL
Sbjct: 1375 IPQDPVLFSGSLRMNLDPFSQYSDEEVWMALELAHLKGFVSALPDKLNHECAEGGENL 1432
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 602 | |||
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-113 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-84 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-73 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-70 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-67 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 7e-57 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-48 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 1e-47 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-46 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 6e-42 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-40 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 9e-39 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-38 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-38 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 9e-33 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-32 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 6e-29 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 3e-28 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 4e-28 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-27 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 3e-27 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-27 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-26 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-26 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-25 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 2e-24 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 9e-24 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-23 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-23 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-23 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-23 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-23 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 3e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-22 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 4e-22 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 5e-22 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 1e-21 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 2e-21 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-20 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-20 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 4e-20 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 8e-20 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-19 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 1e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 2e-19 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 9e-19 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 1e-18 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-18 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-18 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-17 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-17 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 2e-17 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 2e-17 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 4e-17 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 7e-17 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-17 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 1e-16 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-16 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-16 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-16 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 2e-16 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-16 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 5e-16 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 6e-16 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 7e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 2e-15 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-15 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-15 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-15 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-15 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 1e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-14 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 4e-14 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 4e-14 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 8e-14 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 2e-13 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 2e-13 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 4e-13 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-13 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 9e-13 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 2e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-12 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-12 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 4e-12 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-12 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 5e-12 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-12 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 7e-12 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 8e-12 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 1e-11 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-11 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 1e-11 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-11 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 2e-11 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-11 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-11 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-11 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-11 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 4e-11 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-11 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 6e-11 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-11 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 7e-11 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-11 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-10 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-10 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-10 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 1e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-10 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 2e-10 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-10 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-10 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 3e-10 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 3e-10 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-10 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 4e-10 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 5e-10 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 5e-10 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-10 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-10 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 6e-10 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 6e-10 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 7e-10 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-10 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 7e-10 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-10 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-10 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 8e-10 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 8e-10 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 8e-10 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 1e-09 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 1e-09 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 1e-09 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-09 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 1e-09 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-09 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-09 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-09 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-09 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-09 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-09 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 2e-09 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-09 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-09 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 3e-09 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 4e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 4e-09 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 5e-09 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 6e-09 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 7e-09 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 7e-09 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 8e-09 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-08 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 1e-08 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-08 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-08 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-08 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 2e-08 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-08 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 2e-08 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-08 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-08 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-08 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 3e-08 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 3e-08 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 3e-08 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 4e-08 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-08 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 4e-08 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 5e-08 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 5e-08 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 5e-08 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-08 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 6e-08 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-08 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 8e-08 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-07 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 1e-07 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-07 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 1e-07 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-07 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-07 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 1e-07 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-07 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-07 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-07 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-07 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-07 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 2e-07 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 3e-07 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-07 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 4e-07 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 4e-07 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 4e-07 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-07 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 5e-07 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 5e-07 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-07 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 5e-07 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 6e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-07 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 7e-07 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 8e-07 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 8e-07 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 9e-07 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 9e-07 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-06 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 1e-06 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 1e-06 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 1e-06 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 1e-06 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-06 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-06 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-06 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-06 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 1e-06 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-06 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 2e-06 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-06 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 2e-06 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-06 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 2e-06 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 2e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 2e-06 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 2e-06 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 2e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-06 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 3e-06 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 3e-06 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 3e-06 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 3e-06 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 3e-06 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-06 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-06 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 3e-06 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 4e-06 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 4e-06 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-06 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 4e-06 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-06 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 4e-06 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 4e-06 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 4e-06 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 5e-06 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 5e-06 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 6e-06 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 6e-06 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 6e-06 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 7e-06 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 7e-06 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-06 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 7e-06 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-06 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-06 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-06 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 8e-06 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-06 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 8e-06 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 8e-06 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 9e-06 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-06 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 1e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 1e-05 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 1e-05 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-05 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-05 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-05 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 1e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-05 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 2e-05 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 2e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 2e-05 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 2e-05 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-05 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 2e-05 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 2e-05 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 2e-05 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-05 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-05 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 2e-05 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 2e-05 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 2e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-05 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-05 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 3e-05 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 3e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 3e-05 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 3e-05 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-05 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 3e-05 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 3e-05 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-05 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-05 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-05 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-05 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 3e-05 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 3e-05 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 4e-05 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 4e-05 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 4e-05 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-05 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-05 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-05 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 5e-05 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-05 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-05 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 7e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 7e-05 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 8e-05 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 9e-05 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-04 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 1e-04 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-04 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 1e-04 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 1e-04 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 1e-04 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 1e-04 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 1e-04 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 1e-04 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 2e-04 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 2e-04 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 2e-04 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-04 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 2e-04 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 2e-04 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-04 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 2e-04 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 2e-04 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 2e-04 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-04 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-04 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 3e-04 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-04 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-04 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-04 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 3e-04 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 3e-04 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-04 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-04 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 3e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-04 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-04 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 3e-04 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 3e-04 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 4e-04 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 4e-04 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 4e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-04 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-04 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-04 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 4e-04 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 5e-04 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 5e-04 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-04 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 5e-04 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-04 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 5e-04 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 5e-04 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-04 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 6e-04 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 6e-04 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 6e-04 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 6e-04 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-04 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 6e-04 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-04 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 6e-04 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 7e-04 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 7e-04 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 7e-04 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 7e-04 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 7e-04 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-04 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 8e-04 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 8e-04 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 9e-04 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 9e-04 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 9e-04 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 0.001 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 0.001 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 0.001 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 0.001 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.001 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 0.001 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 0.001 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.001 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.001 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 0.001 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.001 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 0.001 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 0.001 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 0.001 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 0.001 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 0.001 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 0.001 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 0.002 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 0.002 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 0.002 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.002 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 0.002 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 0.002 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 0.002 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 0.002 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 0.002 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 0.002 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 0.002 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 0.002 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 0.002 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 0.002 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.002 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 0.003 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 0.003 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 0.003 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 0.003 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 0.003 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 0.003 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 0.003 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 0.003 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 0.004 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 0.004 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 0.004 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 0.004 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 0.004 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 0.004 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 0.004 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 0.004 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 0.004 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 0.004 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 0.004 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 0.004 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 369 bits (949), Expect = e-113
Identities = 221/530 (41%), Positives = 302/530 (56%), Gaps = 116/530 (21%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
++ G I+AS+ LH +L N L S MSFF+ TP G +++RFS++++TVDS +P ++ ++
Sbjct: 1029 VSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMG 1088
Query: 62 CLFSVLYLMPVTI--TVFFYGFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--F 110
LF+V+ + V + T + LG L+ A K L+S+ R SP++ F
Sbjct: 1089 SLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSR-SPVYSHF 1147
Query: 111 DTTPVGRVLSR---------FSSDVNTLDN------------------------------ 131
+ T +G + R SD+ +N
Sbjct: 1148 NETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNCIVLFAA 1207
Query: 132 ------KLTLS---VQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182
+ +LS V ++S ++T LNWLVRM+S++ETNIVAVER+KEY ET +EA
Sbjct: 1208 LFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAP 1267
Query: 183 W-VNDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSS 227
W + + P WP +G VEF++Y +RYRE L+LV GIVGRTGAGKSS
Sbjct: 1268 WQIQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSS 1327
Query: 228 LTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287
LTL LFRI E A+G IIIDG++I +GLH LR ++TIIPQ PV
Sbjct: 1328 LTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQ-----------DPV------ 1370
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHF-- 344
+F+ ++ + + PF S V + +L L++ VS P
Sbjct: 1371 -------------LFSGSLR-MNLDPF-SQYSDEEVWWALELAHLKTFVSALPDKLDHEC 1415
Query: 345 ---GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401
GE ++ VGQRQL+CLARALLRKTKIL+LDEATAA+DLETD+LIQSTIR++F CTV
Sbjct: 1416 AEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTV 1473
Query: 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
LTIAHRLNTI+D RV+VLDKG V EF +PS L++ + IFYSMAKDAGL
Sbjct: 1474 LTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRG-IFYSMAKDAGL 1522
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 263 bits (674), Expect = 1e-84
Identities = 123/259 (47%), Positives = 153/259 (59%), Gaps = 62/259 (23%)
Query: 197 GEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGT 242
G++EFK+ +RYR L V GIVGRTG+GKSSL LALFR++E + G+
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDGVDI +GLH LRSR++IIP Q ++F
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIP------------------------------QDPVLF 90
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKR-LESVS-RSPIYSHFG---ETVTGN-----V 352
+ ++ SNL F + +L + LE V + + S G V V
Sbjct: 91 SGTIR--------SNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSV 142
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQL+CLARALLRK+KIL+LDEATA++D ETD LIQ TIR F CTVLTIAHRL+TII
Sbjct: 143 GQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTII 202
Query: 413 DSDRVLVLDKGLVVEFDSP 431
DSDR+LVLDKG VVEFDSP
Sbjct: 203 DSDRILVLDKGRVVEFDSP 221
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 256 bits (656), Expect = 1e-73
Identities = 144/334 (43%), Positives = 183/334 (54%), Gaps = 57/334 (17%)
Query: 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-NDKKPKDEWPEKGEV 199
LS IT L ++R+ S E ++ AVER+ Y + P EA V + +P WP G +
Sbjct: 1179 LSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSI 1238
Query: 200 EFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+F+D +RYR L E VGIVGRTGAGKSS+ ALFRI+E G I+I
Sbjct: 1239 KFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILI 1298
Query: 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
DG DI GL LR L IIPQ PV +F+
Sbjct: 1299 DGCDISKFGLMDLRKVLGIIPQ-----------APV-------------------LFSGT 1328
Query: 306 VKPLIITPFCS-NLQRFYVATSR-QLKRLESVSRSPI-----YSHFGETVTGNVGQRQLI 358
V+ + PF N + + R LK + + R+ + S GE + VGQRQL+
Sbjct: 1329 VR-FNLDPFNEHNDADLWESLERAHLK--DVIRRNSLGLDAEVSEAGENFS--VGQRQLL 1383
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
LARALLR++KIL+LDEATAA+D+ TD LIQ TIR EF CT+L IAHRLNTIID DR+L
Sbjct: 1384 SLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRIL 1443
Query: 419 VLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
VLD G VVEFD+P L+ N+ S F M + G A
Sbjct: 1444 VLDAGRVVEFDTPENLLSNEGSAFSKMVQSTGAA 1477
|
Length = 1622 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 246 bits (629), Expect = 4e-70
Identities = 180/540 (33%), Positives = 259/540 (47%), Gaps = 128/540 (23%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
L + S+ A+K LH +L +IL + M FF T P GR+I+RFS+D+ +D N+ + ++N
Sbjct: 974 LISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMN 1033
Query: 62 C---LFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHE------KLLKSMLRWSPLFFDT 112
L S L+ T+ + + L +AA ++ + L S+ R SP++
Sbjct: 1034 QLWQLLSTFALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTR-SPIY--- 1089
Query: 113 TPVGRVLSRFSS-------------DVNTLDNKLTLSVQQT------------------- 140
G L+ SS + ++DN + ++ T
Sbjct: 1090 AQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIW 1149
Query: 141 --------------------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174
LS IT L+ ++R S E ++ +VER+ Y
Sbjct: 1150 LTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNY 1209
Query: 175 GETPQEA-EWVNDKKPKDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVG 219
+ P EA + + +P WP +G ++F+D +RYR GL E VG+VG
Sbjct: 1210 IDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVG 1269
Query: 220 RTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279
RTGAGKSS+ ALFRI+E G I+ID D+ GL LR L+IIPQ +
Sbjct: 1270 RTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQ-----------S 1318
Query: 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSR-QLKRLESVSR 337
PV +F+ V+ I PF N + A R +K + + R
Sbjct: 1319 PV-------------------LFSGTVR-FNIDPFSEHNDADLWEALERAHIK--DVIDR 1356
Query: 338 SPI-----YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
+P S GE + VGQRQL+ LARALLR++KIL+LDEATA++D+ TD LIQ TI
Sbjct: 1357 NPFGLDAEVSEGGENFS--VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTI 1414
Query: 393 RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLA 452
R EF CT+L IAHRLNTIID D++LVL G V+E+DSP L+ S F+ M G A
Sbjct: 1415 REEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGPA 1474
|
Length = 1495 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 216 bits (553), Expect = 5e-67
Identities = 107/253 (42%), Positives = 139/253 (54%), Gaps = 60/253 (23%)
Query: 193 WPEKGEVEFKDYKVRYR--------------EGLELVGIVGRTGAGKSSLTLALFRIIEP 238
WPE GE+E ++ VRY + E +GIVGRTGAGKS+L LALFR +E
Sbjct: 1 WPEHGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEA 60
Query: 239 ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQV 298
+G I IDG+DI T+ L LRS LTIIPQ P
Sbjct: 61 EEGKIEIDGIDISTIPLEDLRSSLTIIPQ-----------DPT----------------- 92
Query: 299 SLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358
+F+ ++ SNL F + ++ VS G ++ GQRQL+
Sbjct: 93 --LFSGTIR--------SNLDPFDEYSDEEIYGALRVSEG------GLNLSQ--GQRQLL 134
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
CLARALL++ ++L+LDEATA+ID TD LIQ TIR EF + T+LTIAHRL TIID D++L
Sbjct: 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKIL 194
Query: 419 VLDKGLVVEFDSP 431
V+D G V E+D P
Sbjct: 195 VMDAGEVKEYDHP 207
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 190 bits (486), Expect = 7e-57
Identities = 73/108 (67%), Positives = 86/108 (79%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
VGIVGRTG+GKSSL LALFR++E + G+I+IDGVDI +GLH LRSR++IIPQDPVLFSG
Sbjct: 33 VGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSG 92
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NLDP GE SDE +W+ALE L FV +LP L V EGGENL
Sbjct: 93 TIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 7e-48
Identities = 78/118 (66%), Positives = 95/118 (80%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +++ +VGIVGRTGAGKSSLTL LFRI E A+G IIIDG++I +GLH LR ++TI
Sbjct: 1305 INVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITI 1364
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDPVLFSG+LR+NLDP + SDE +W ALELAHL TFVS LP +L HE +EGGENL
Sbjct: 1365 IPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENL 1422
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 167 bits (423), Expect = 1e-47
Identities = 104/270 (38%), Positives = 151/270 (55%), Gaps = 52/270 (19%)
Query: 197 GEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
GE++ D VRY L + VGI GRTG+GKSSL+LA FR+++ DG
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGK 77
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDG+DI L LHTLRSRL+II Q P+ F +
Sbjct: 78 IVIDGIDISKLPLHTLRSRLSIILQ-----------DPIL-----------FSGSIRFNL 115
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQL 357
+ K C++ + + QLK + V P + + GE + VGQRQL
Sbjct: 116 DPECK-------CTDDRLWEALEIAQLKNM--VKSLPGGLDAVVTEGGENFS--VGQRQL 164
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV 417
CLARA +RK+ ILI+DEATA+ID+ T++++Q + + FA TV+TIAHR++TI+D+D V
Sbjct: 165 FCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLV 224
Query: 418 LVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
LVL +G++VE D+P L+ + +F S+ +
Sbjct: 225 LVLSRGILVECDTPENLLAQEDGVFASLVR 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 174 bits (442), Expect = 8e-46
Identities = 129/389 (33%), Positives = 185/389 (47%), Gaps = 99/389 (25%)
Query: 115 VGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174
+G +L S ++ + LT+++Q T TLNWLVR + VE ++ +VER+ Y
Sbjct: 1205 IGTMLRATSQEIGLVSLSLTMAMQ--------TTATLNWLVRQVATVEADMNSVERLLYY 1256
Query: 175 -GETPQEA-----EWVNDKK-------------------PKDEWP---EKGEVEFKDYKV 206
E P E E V+ + P P + G + F+ ++
Sbjct: 1257 TDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQM 1316
Query: 207 RYREGLELV--------------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
RYREGL LV GIVGRTG+GKS+L L R++E G I ++G +I
Sbjct: 1317 RYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGA 1376
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT 312
GL LR + F ++P Q ++F V+
Sbjct: 1377 YGLRELRRQ----------------------FSMIP--------QDPVLFDGTVR----- 1401
Query: 313 PFCSNLQRFYVATSRQLKR-LESV-------SRSP-IYSHFGETVTG-NVGQRQLICLAR 362
N+ F A+S ++ LE V S S I S E + +VGQRQL+C+AR
Sbjct: 1402 ---QNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMAR 1458
Query: 363 ALLRKTKILIL-DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421
ALL+K IL DEATA ID D IQ+T+ S F+ TV+TIAHRL+T+ D+++V+D
Sbjct: 1459 ALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMD 1518
Query: 422 KGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
G V E SP L+ N+ SIF+SM + G
Sbjct: 1519 HGAVAEMGSPRELVMNRQSIFHSMVEALG 1547
|
Length = 1560 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 6e-42
Identities = 80/258 (31%), Positives = 125/258 (48%), Gaps = 46/258 (17%)
Query: 197 GEVEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
GE+EF++ Y E E V IVG TGAGK++L L R +P G I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+IDG+DIR + +LRS + ++ Q F+F +++ T
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQ------------DTFLF---SGTIMENIRLGRPNAT 105
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTG-NVGQRQLICL 360
++ + +++ + + + P + GE + G+RQL+ +
Sbjct: 106 DEE---------------VIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAI 150
Query: 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
ARA+LR KILILDEAT+ ID ET+ LIQ + T + IAHRL+TI ++D++LVL
Sbjct: 151 ARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVL 210
Query: 421 DKGLVVEFDSPSVLMKNK 438
D G ++E + L+ K
Sbjct: 211 DDGKIIEEGTHDELLAKK 228
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 155 bits (393), Expect = 1e-40
Identities = 89/320 (27%), Positives = 139/320 (43%), Gaps = 57/320 (17%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L + S ++ A ER+ E + E E D G +EF++
Sbjct: 281 LLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDPLK----DTIGSIEFENVSF 336
Query: 207 RYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
Y E V IVG +G+GKS+L L R+ +P G I+IDG+DIR +
Sbjct: 337 SYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDI 396
Query: 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
L +LR R+ I+ Q +F ++ I
Sbjct: 397 SLDSLRKRIGIVSQ------------DPLLF---SGTIRE----------------NIAL 425
Query: 314 FCSNLQRFYV-ATSRQLKRLESVSRSPIYSHF-----GETVTGNVGQRQLICLARALLRK 367
+ + + E ++ P G ++G GQRQ + +ARALLR
Sbjct: 426 GRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG--GQRQRLAIARALLRN 483
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
ILILDEAT+A+D ET+ LIQ ++ T L IAHRL+TI ++DR++VLD G +VE
Sbjct: 484 PPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVE 543
Query: 428 FDSPSVLMKNKASIFYSMAK 447
+ L+ ++ + +
Sbjct: 544 RGTHEELLAKG-GLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 143 bits (361), Expect = 9e-39
Identities = 72/151 (47%), Positives = 94/151 (62%), Gaps = 26/151 (17%)
Query: 478 ETLNAGLVGL---------SVSY-----------------AMQVGIVGRTGAGKSSLTLA 511
+ N+GLVGL V Y +VGI GRTG+GKSSL+LA
Sbjct: 7 GSSNSGLVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLA 66
Query: 512 LFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAI 571
FR+++ DG I+IDG+DI L LHTLRSRL+II QDP+LFSG++R NLDP + +D+ +
Sbjct: 67 FFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRL 126
Query: 572 WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
W+ALE+A L V +LP L V+EGGEN
Sbjct: 127 WEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 2e-38
Identities = 64/117 (54%), Positives = 77/117 (65%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ +S + +VGIVGRTGAGKSS+ ALFRI+E G I+IDG DI GL LR L I
Sbjct: 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGI 1317
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
IPQ PVLFSGT+R NLDP E +D +W++LE AHL + L EVSE GEN
Sbjct: 1318 IPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGEN 1374
|
Length = 1622 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-38
Identities = 64/118 (54%), Positives = 73/118 (61%), Gaps = 18/118 (15%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V ++GIVGRTGAGKS+L LALFR +E +G I IDG+DI T+ L LRS LTI
Sbjct: 27 VSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTI 86
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
IPQDP LFSGT+R NLDP E SDE I+ AL VSEGG NL
Sbjct: 87 IPQDPTLFSGTIRSNLDPFDEYSDEEIYGAL------------------RVSEGGLNL 126
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-33
Identities = 67/121 (55%), Positives = 82/121 (67%), Gaps = 2/121 (1%)
Query: 484 LVGLS--VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 541
L GLS VS + +VG+VGRTGAGKSS+ ALFRI+E G I+ID D+ GL LR
Sbjct: 1252 LHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRV 1311
Query: 542 LTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
L+IIPQ PVLFSGT+R N+DP E +D +W+ALE AH+ + P L EVSEGGEN
Sbjct: 1312 LSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGEN 1371
Query: 602 L 602
Sbjct: 1372 F 1372
|
Length = 1495 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 4e-32
Identities = 138/527 (26%), Positives = 224/527 (42%), Gaps = 126/527 (23%)
Query: 7 IRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN----- 61
+ SK LH +L ++L + M+ +T GR+++RF++D+ +D LP L +I
Sbjct: 954 LTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIV 1013
Query: 62 ----CLFSVL--YLMPVTITV----------------------------FFYGFVISLG- 86
+ SVL Y+ I V F + SL
Sbjct: 1014 LGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKG 1073
Query: 87 --------------TLF-AAKRLHEK---LLKSMLRWSPLFFDTTPVGRVLSRFSSDVNT 128
TLF A LH L S LRW + D V ++ + T
Sbjct: 1074 LWTIRAFGRQSYFETLFHKALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT 1133
Query: 129 LDNKLTLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE------ 182
+ V L+ I TL W V + DV+ + +V R+ ++ + PQE
Sbjct: 1134 NQDGEG-EVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGG 1192
Query: 183 ---------WVNDKKPKDEWPEKGEVEFKDYKVRYRE--------------GLELVGIVG 219
+ + + WP G+++ + +Y E G + VG++G
Sbjct: 1193 GKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLG 1252
Query: 220 RTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279
RTG+GKS+L AL R++ +G I IDGV ++ L T R +IPQ
Sbjct: 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQ------------ 1299
Query: 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP 339
VFIF S F +++ P S+ + + VA LK + + + P
Sbjct: 1300 KVFIF--------------SGTFRKNLDPY---EQWSDEEIWKVAEEVGLKSV--IEQFP 1340
Query: 340 IYSHF----GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395
F G V N G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++
Sbjct: 1341 DKLDFVLVDGGYVLSN-GHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQS 1399
Query: 396 FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
F++CTV+ HR+ +++ + LV++ V ++DS L+ N+ S+F
Sbjct: 1400 FSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLL-NETSLF 1445
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 6e-29
Identities = 69/236 (29%), Positives = 117/236 (49%), Gaps = 38/236 (16%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
G V + +R + G E+VGIVGR+G+GKS+LT + R P +G +++DG D+
Sbjct: 14 GPVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPA 72
Query: 257 TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS 316
LR ++ ++ +Q +++F ++ I
Sbjct: 73 WLRRQVGVV------------------------------LQENVLFNRSIRDNIALADPG 102
Query: 317 NLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKIL 371
+ ++ + +S P I G ++G GQRQ I +ARAL+ +IL
Sbjct: 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSG--GQRQRIAIARALIHNPRIL 160
Query: 372 ILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
I DEAT+A+D E++ I + A TV+ IAHRL+T+ ++DR++V++KG +VE
Sbjct: 161 IFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVE 216
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 110 bits (279), Expect = 3e-28
Identities = 45/83 (54%), Positives = 58/83 (69%), Gaps = 3/83 (3%)
Query: 344 FGETVTGNV---GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400
F T+ N+ GQRQ I +ARALLR ILILDEAT+A+D ET+ LI +R+ T
Sbjct: 88 FSGTIRENILSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKT 147
Query: 401 VLTIAHRLNTIIDSDRVLVLDKG 423
V+ IAHRL+TI D+DR++VLD G
Sbjct: 148 VIVIAHRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 4e-28
Identities = 85/262 (32%), Positives = 131/262 (50%), Gaps = 50/262 (19%)
Query: 194 PEKGEVEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIE 237
P +GE+EF+ Y R G E V +VG +GAGKS+L L R +
Sbjct: 333 PLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPG-ETVALVGPSGAGKSTLFQLLLRFYD 391
Query: 238 PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297
P G I++DGVD+R L LR+R+ ++PQ PV V ++ Y
Sbjct: 392 PQSGRILLDGVDLRQLDPAELRARMALVPQ-----------DPVLFAASVMENIRYGRPD 440
Query: 298 VSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGET-VTGNVGQ 354
+ E+V+ A +R E +S P ++ GE VT + GQ
Sbjct: 441 AT---DEEVE----------------AAARAAHAHEFISALPEGYDTYLGERGVTLSGGQ 481
Query: 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDS 414
RQ I +ARA+L+ IL+LDEAT+A+D E++ L+Q + + T L IAHRL T++ +
Sbjct: 482 RQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKA 541
Query: 415 DRVLVLDKGLVVEFDSPSVLMK 436
DR++V+D+G +V + + L+
Sbjct: 542 DRIVVMDQGRIVAQGTHAELIA 563
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 2e-27
Identities = 82/294 (27%), Positives = 140/294 (47%), Gaps = 56/294 (19%)
Query: 154 LVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRY----R 209
L + + ++ + A E + ++P E + + + +G+VEF++ RY R
Sbjct: 290 LTNVNAPMQRGLAAAESLFTLLDSPPEKD--TGTRAIER--ARGDVEFRNVTFRYPGRDR 345
Query: 210 EGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
L E V +VGR+G+GKS+L + R EP G I++DG D+ L +LR
Sbjct: 346 PALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLR 405
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFV-IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL 318
++ ++ S V +F + ++ Y + +++ + +
Sbjct: 406 RQVALV------------SQDVVLFNDTIANNIAYG--RTEQADRAEIERALAA---AYA 448
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHF-----GETVTGNVGQRQLICLARALLRKTKILIL 373
Q F V + P+ G ++G GQRQ + +ARALL+ ILIL
Sbjct: 449 QDF-------------VDKLPLGLDTPIGENGVLLSG--GQRQRLAIARALLKDAPILIL 493
Query: 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
DEAT+A+D E++ L+Q+ + T L IAHRL+TI +DR++V+D G +VE
Sbjct: 494 DEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVE 547
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-27
Identities = 45/121 (37%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ S+ V IVG TGAGK++L L R +P G I+IDG+DIR + +LRS + +
Sbjct: 22 INFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81
Query: 545 IPQDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
+ QD LFSGT+ N+ P ++DE + +A + A + F+ LP + E G N
Sbjct: 82 VLQDTFLFSGTIMENIRLGRP--NATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139
Query: 602 L 602
L
Sbjct: 140 L 140
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 5e-27
Identities = 80/271 (29%), Positives = 124/271 (45%), Gaps = 66/271 (24%)
Query: 197 GEVEFKDYKVRYREG----LE----------LVGIVGRTGAGKSSLTLALFRIIEPADGT 242
G++ KD +Y EG LE VG++GRTG+GKS+L A R++ +G
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGD 59
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I IDGV ++ L R +IPQ VFIF
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQ------------KVFIFS----------------- 90
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRL-ESVSRSPIYSHF----------GETVTGN 351
F NL + + ++ ++ E V + F G V +
Sbjct: 91 ---------GTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSH 141
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++ FA CTV+ HR+ +
Sbjct: 142 -GHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM 200
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ R LV+++ V ++DS L+ N+ S F
Sbjct: 201 LECQRFLVIEENKVRQYDSIQKLL-NEKSHF 230
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-26
Identities = 86/279 (30%), Positives = 130/279 (46%), Gaps = 52/279 (18%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG------------- 211
+VA ER+ E + P++ ++ ND +P + G ++ + YR+
Sbjct: 312 VVAGERVFELMDGPRQ-QYGNDDRPL----QSGRIDIDNVSFAYRDDNLVLQNINLSVPS 366
Query: 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
V +VG TG+GKS+L L +G I +DG + +L LR + ++ Q
Sbjct: 367 RGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQ---- 422
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
PV V F V+L D S Q + + QL
Sbjct: 423 -------DPV-------VLADTFLANVTL--GRD---------ISEEQVWQALETVQLAE 457
Query: 332 LESVSRSPIYSHFGETVTGN---VGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L +Y+ GE GN VGQ+QL+ LAR L++ +ILILDEATA ID T+ I
Sbjct: 458 LARSLPDGLYTPLGEQ--GNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAI 515
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
Q + + H T++ IAHRL+TI+++D +LVL +G VE
Sbjct: 516 QQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVE 554
|
Length = 592 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 5e-26
Identities = 51/108 (47%), Positives = 69/108 (63%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
+VGIVGRTG+GKS+L L R++E G I ++G +I GL LR + ++IPQDPVLF
Sbjct: 1338 KVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFD 1397
Query: 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601
GT+R N+DP E+S +W ALEL L V++ + V EGG N
Sbjct: 1398 GTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSN 1445
|
Length = 1560 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 2e-25
Identities = 85/313 (27%), Positives = 139/313 (44%), Gaps = 56/313 (17%)
Query: 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE-KGEVEFKDY 204
++TQ + L ++ D + +A+ER+ + +P E PE +G + F++
Sbjct: 406 RVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTE----PRSAGLAALPELRGAITFENI 461
Query: 205 KVRYRE--------------GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
+ RY E +GIVG +G+GKS+LT L R+ P G +++DGVD+
Sbjct: 462 RFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDL 521
Query: 251 RTLGLHTLRSRLTIIPQ--VLATIFV---ICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
LR ++ ++ Q VL + + I P + L D
Sbjct: 522 AIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNP-------GAPFEHVIHAAKLAGAHD 574
Query: 306 VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALL 365
F S L + Y + + G ++G QR I +ARAL+
Sbjct: 575 --------FISELPQGY--------------NTEVGEK-GANLSGGQRQR--IAIARALV 609
Query: 366 RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425
+ILI DEAT+A+D E++ LI +R TV+ IAHRL+T+ DR++VL+KG +
Sbjct: 610 GNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQI 669
Query: 426 VEFDSPSVLMKNK 438
E L+ +
Sbjct: 670 AESGRHEELLALQ 682
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-24
Identities = 45/111 (40%), Positives = 63/111 (56%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+GR G+GKS+L L + +P G++++DG DIR L LR + +PQD LF G
Sbjct: 33 VAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYG 92
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
TLR N+ P + DE I +A ELA + FV+ P L ++ E G L
Sbjct: 93 TLRDNITLGAP--LADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGL 141
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 99 bits (250), Expect = 9e-24
Identities = 42/95 (44%), Positives = 60/95 (63%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARALLR KIL+LDEAT+A+D E++ L+Q + T + IAHRL+TI
Sbjct: 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR 202
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D + VL G VVE + LM K ++ + K
Sbjct: 203 NADLIAVLQNGQVVEQGTHDELMAQKG-VYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 1e-23
Identities = 51/109 (46%), Positives = 74/109 (67%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS+L L R+ +P G I+IDG+DIR + L +LR R+ I+ QDP+LFSG
Sbjct: 358 VAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG 417
Query: 555 TLRLNLDP-VGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ +++DE I +AL+LA+ + F++NLP V E G NL
Sbjct: 418 TIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466
|
Length = 567 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 1e-23
Identities = 85/312 (27%), Positives = 145/312 (46%), Gaps = 53/312 (16%)
Query: 145 FKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDY 204
++ + + L + S + + A E++ EY + P +G +EF+D
Sbjct: 428 EQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPL---NLEGLIEFQDV 484
Query: 205 KVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
Y +GL E+V +VG +G+GKS++ L + +P G +++DGV
Sbjct: 485 SFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVP 544
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
+ H L ++ ++ Q PV V ++ Y L T D + +
Sbjct: 545 LVQYDHHYLHRQVALVGQ-----------EPVLFSGSVRENIAY-----GLTDTPDEEIM 588
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTG-NVGQRQLICLARALLR 366
A ++ + + P + GE + + GQ+Q I +ARAL+R
Sbjct: 589 --------------AAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVR 634
Query: 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426
K ++LILDEAT+A+D E + L+Q + A TVL IAHRL+T+ +D++LVL KG VV
Sbjct: 635 KPRVLILDEATSALDAECEQLLQES--RSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692
Query: 427 EFDSPSVLMKNK 438
E + LM+++
Sbjct: 693 EMGTHKQLMEDQ 704
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 99.2 bits (248), Expect = 1e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALL+ ILILDEAT+A+D E++ L+Q+ + + T IAHRL+TI
Sbjct: 142 GQRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIE 201
Query: 413 DSDRVLVLDKGLVVE 427
++DR++VL+ G +VE
Sbjct: 202 NADRIVVLEDGKIVE 216
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 98.5 bits (246), Expect = 3e-23
Identities = 36/93 (38%), Positives = 61/93 (65%), Gaps = 1/93 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +ARA+L+ IL+LDEAT+A+D T+ IQ+ +R T + IAHRL+TI+
Sbjct: 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIV 200
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
++D+++VL G +VE + L+ K ++ M
Sbjct: 201 NADKIIVLKDGRIVERGTHEELL-AKGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 8e-23
Identities = 45/109 (41%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+GR G+GKS+L L + +P +G++++DGVDIR + LR + +PQDP LF G
Sbjct: 494 VAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG 553
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
TLR N+ + DE I +A ELA + FV P L ++ E G +L
Sbjct: 554 TLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 3e-22
Identities = 82/274 (29%), Positives = 134/274 (48%), Gaps = 51/274 (18%)
Query: 196 KGEVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
KG VEF+ + +G+ + V IVG TGAGK++L L R+ +P G
Sbjct: 332 KGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQ 391
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
I+IDG+DI T+ +LR + +AT+F Q + +F
Sbjct: 392 ILIDGIDINTVTRESLR-------KSIATVF-----------------------QDAGLF 421
Query: 303 TEDVKPLI-ITPFCSNLQRFYVATSRQLKRLESVSRSPIY----SHFGETVTGNVGQRQL 357
++ I + + + Y A + RS Y G ++G G+RQ
Sbjct: 422 NRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG--GERQR 479
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV 417
+ +ARA+L+ IL+LDEAT+A+D+ET+ +++ I + + T IAHRL+T+ ++D V
Sbjct: 480 LAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLV 539
Query: 418 LVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
L LD+G ++E S L+ K FY + + +GL
Sbjct: 540 LFLDQGRLIEKGSFQELI-QKDGRFYKLLRRSGL 572
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.9 bits (250), Expect = 3e-22
Identities = 86/334 (25%), Positives = 146/334 (43%), Gaps = 59/334 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLAT 271
E+ ++G GAGKS+L L + P G I+IDG + L + + + Q L+
Sbjct: 35 EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELS- 93
Query: 272 IFVICYSTPVFIFVIVP-VSV---LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+VP +SV ++ + E + + + +
Sbjct: 94 --------------LVPNLSVAENIF-------LGREPTRRFGLI----DRKAMRRRARE 128
Query: 328 QLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAIDL-ET 384
L RL + P +T+ G+ + QRQ++ +ARAL ++LILDE TAA+ + ET
Sbjct: 129 LLARLG-LDIDP------DTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAALTVKET 181
Query: 385 DDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ L IR A ++ I+HRL+ + + +DR+ VL G VV P+ ++ +
Sbjct: 182 ERLF-DLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVG-TRPTAAETSEDELV 239
Query: 443 YSM-AKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQ----VGI 497
M ++ + E +G VL L+ G VS+ ++ +GI
Sbjct: 240 RLMVGRELEDLFPEPPEEGIGEP---------VLEVRNLSGGGKVRDVSFTVRAGEILGI 290
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
G GAG++ L ALF + G I++DG +R
Sbjct: 291 AGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
|
Length = 500 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 4e-22
Identities = 48/111 (43%), Positives = 71/111 (63%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVGR+G+GKS+L L + +P G I++DGVD+ + L +LR ++ + QDP LFSG
Sbjct: 502 VAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSG 561
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ +P E++DE I +A +LA + F+ NLP V EGG NL
Sbjct: 562 SIRENIALGNP--EATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610
|
Length = 709 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 5e-22
Identities = 47/115 (40%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ S+S +VG++GRTG+GKS+L A R++ +G I IDGV ++ L R +
Sbjct: 23 ISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGV 81
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
IPQ +FSGT R NLDP G+ SDE IWK E L + + P +L + +GG
Sbjct: 82 IPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGG 136
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 93.3 bits (232), Expect = 1e-21
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 56/252 (22%)
Query: 196 KGEVEFKDYKVRYR--------EGL-------ELVGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F++ Y + + E+ +VG +G+GKS++ L +P
Sbjct: 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQG 68
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSL 300
G +++DG I L S+++++ Q PV + ++ Y S
Sbjct: 69 GQVLLDGKPISQYEHKYLHSKVSLVGQ-----------EPVLFARSLQDNIAYGLQSCS- 116
Query: 301 IFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV---G 353
E VK F S L Y + GE G+ G
Sbjct: 117 --FECVKEAAQKAHAHSFISELASGY------------------DTEVGEK--GSQLSGG 154
Query: 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413
Q+Q + +ARAL+R ++LILDEAT+A+D E++ +Q + TVL IAHRL+T+
Sbjct: 155 QKQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVER 214
Query: 414 SDRVLVLDKGLV 425
+D++LVLD G +
Sbjct: 215 ADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 90.9 bits (227), Expect = 2e-21
Identities = 35/66 (53%), Positives = 47/66 (71%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS+L L R+ +P G I+IDGVD+R L L +LR + +PQDP LFSG
Sbjct: 31 VAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDPFLFSG 90
Query: 555 TLRLNL 560
T+R N+
Sbjct: 91 TIRENI 96
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 2e-20
Identities = 43/83 (51%), Positives = 58/83 (69%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALL K KIL+LDEAT+A+D ET+ +I + TV+ IAHRL+TI
Sbjct: 613 GQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIR 672
Query: 413 DSDRVLVLDKGLVVEFDSPSVLM 435
+DR++VLD+G +VE S L+
Sbjct: 673 SADRIIVLDQGKIVEQGSHEELL 695
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 94.3 bits (235), Expect = 3e-20
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 29/212 (13%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
E V +VG +GAGKS+L L ++P +G+I ++GV + + R ++ +PQ
Sbjct: 346 PPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQ-- 403
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
P + ++ E++ + P S+ + L
Sbjct: 404 ---------HPF----LFAGTIA-----------ENI--RLARPDASDAEIREALERAGL 437
Query: 330 KRLESVSRSPIYSHFGETVTG-NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+ + + GE G + GQ Q + LARA LR +L+LDE TA +D ET+ +
Sbjct: 438 DEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEV 497
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
+R+ TVL + HRL +DR++VL
Sbjct: 498 LEALRALAQGRTVLLVTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 89.2 bits (222), Expect = 4e-20
Identities = 35/111 (31%), Positives = 59/111 (53%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G+GKS+L + R + G I+IDG D+R L +LR ++ ++ QD LF+
Sbjct: 31 VALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFND 90
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ P ++ E + +A A+ + F+ LP + E G L
Sbjct: 91 TVAENIAYGRP--GATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKL 139
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 92.7 bits (231), Expect = 8e-20
Identities = 36/87 (41%), Positives = 51/87 (58%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ Q + LARALL +L+LDE TA +D ET+ +I ++ TVL I HRL
Sbjct: 459 GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDA 518
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
D+DR++VLD G +VE + L + +
Sbjct: 519 ADADRIVVLDNGRLVEQGTHEELSEKQ 545
|
Length = 559 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 1e-19
Identities = 44/119 (36%), Positives = 71/119 (59%), Gaps = 5/119 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L++ V +VG +G GKS++ L R +P G I++DGVDIR L L LRS++ ++
Sbjct: 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVS 83
Query: 547 QDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+PVLF GT+ N+ P +++DE + +A + A+++ F+ +LP V E G L
Sbjct: 84 QEPVLFDGTIAENIRYGKP--DATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQL 140
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 1e-19
Identities = 41/115 (35%), Positives = 66/115 (57%), Gaps = 11/115 (9%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +G+GKS++ LFR + + G+I+IDG DIR + L +LR + ++PQD VLF+
Sbjct: 30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND 89
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE------GGE 600
T+ N+ P +++DE + +A + A ++ + P V E GGE
Sbjct: 90 TIGYNIRYGRP--DATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGE 142
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 92.7 bits (230), Expect = 2e-19
Identities = 48/115 (41%), Positives = 67/115 (58%), Gaps = 1/115 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ SV +VG++GRTG+GKS+L AL R++ +G I IDGV ++ L T R +
Sbjct: 1238 LSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGV 1296
Query: 545 IPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
IPQ +FSGT R NLDP + SDE IWK E L + + P +L + +GG
Sbjct: 1297 IPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGG 1351
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 9e-19
Identities = 39/86 (45%), Positives = 57/86 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +AR +L+ ILILDEAT+A+D T+ IQ+ +R A T L IAHRL+TII
Sbjct: 403 GEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII 462
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
D+D ++VLD G +VE + L+
Sbjct: 463 DADEIIVLDNGRIVERGTHEELLAAG 488
|
Length = 497 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 42/112 (37%), Positives = 62/112 (55%), Gaps = 6/112 (5%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
+VG +GAGKS+L L + P G I ++G+D+R L R +++ + Q+P LF+
Sbjct: 349 LTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFA 408
Query: 554 GTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
GT+R N+ P ++SDE I AL+ A L FV P L + EGG L
Sbjct: 409 GTIRENILLARP--DASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGL 457
|
Length = 559 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 88.9 bits (221), Expect = 1e-18
Identities = 40/86 (46%), Positives = 58/86 (67%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D +LV++ G +VE + + L+
Sbjct: 544 KADEILVVEDGEIVERGTHAELLAQN 569
|
Length = 582 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 2e-18
Identities = 56/229 (24%), Positives = 97/229 (42%), Gaps = 39/229 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++L L +++P G I++ G D+ +R R+ +PQ
Sbjct: 32 EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQ----- 85
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
P + L FF ++ + E+ + I L+ F L
Sbjct: 86 ------EPSLYPELTVRENLEFFARLYGLSKEEAEERIE----ELLELF---------GL 126
Query: 333 ESVSRSPI--YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
E + + S G +Q + +A ALL ++LILDE T+ +D E+ I
Sbjct: 127 EDKANKKVRTLSG---------GMKQRLSIALALLHDPELLILDEPTSGLDPESRREIWE 177
Query: 391 TIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+R T+L H L + DRV++L+ G ++ +P L +
Sbjct: 178 LLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226
|
Length = 293 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.7 bits (213), Expect = 1e-17
Identities = 63/219 (28%), Positives = 95/219 (43%), Gaps = 22/219 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G RQ + +A AL K K+LI DE T A+D+ T I ++ VL I H L
Sbjct: 158 GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGV 217
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN----------KASIFY-SMAKDAGLAWLAVR- 457
+ + +DRV+V+ KG +VE ++ N A +R
Sbjct: 218 VAELADRVVVMYKGEIVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRA 277
Query: 458 --LETVGNLITF---SAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLAL 512
L +V NL L E V + +G+VG +G+GKS+L L
Sbjct: 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARIL 337
Query: 513 FRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQDP 549
++ P+ G+II DG +D+ L LR R+ ++ QDP
Sbjct: 338 AGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDP 376
|
Length = 539 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 1e-17
Identities = 38/75 (50%), Positives = 54/75 (72%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARAL+R ILILDEAT+A+D ET+ +I +R CT + +AHRL+TI
Sbjct: 619 GQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRRR--GCTCIIVAHRLSTIR 676
Query: 413 DSDRVLVLDKGLVVE 427
D D ++VL++G VV+
Sbjct: 677 DCDEIIVLERGKVVQ 691
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 2e-17
Identities = 79/342 (23%), Positives = 132/342 (38%), Gaps = 89/342 (26%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLP-TFLRSWINCLF 64
R L R++L +S+F+ VG +ISR ++E + L + L I+ LF
Sbjct: 222 GKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLF 280
Query: 65 SVLYL-------MPVTITVFFYGFVISLGTLFAAKRLHEKLLKSM--------------- 102
++++L +T+ V + L TL L K K +
Sbjct: 281 ALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIK 340
Query: 103 ---------------LRWSPLF-------FDTTPVGRVLSRFSSDVN------------- 127
+W F T + +L+ S +
Sbjct: 341 GIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAI 400
Query: 128 -TLDNKLTL-------SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQ 179
L+ +LTL + P IT+ L ++ +D + VA+ER+ + +TP
Sbjct: 401 LVLEGELTLGQLVAFNMLAGYFISP--ITR----LSQLWTDFQQAKVALERLGDILDTPP 454
Query: 180 EAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGK 225
E E DK +GE+EF++ RY E V IVGR+G+GK
Sbjct: 455 EQE--GDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGK 512
Query: 226 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
S+L L + +P G I++DGVD+ + L +LR ++ + Q
Sbjct: 513 STLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQ 554
|
Length = 709 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-17
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +GAGKS+L L ++P +G+I ++GV + + R ++ +PQ P LF+G
Sbjct: 351 VALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAG 410
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ P ++SD I +ALE A L+ FV+ LP L + EGG L
Sbjct: 411 TIAENIRLARP--DASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGL 459
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-17
Identities = 45/139 (32%), Positives = 78/139 (56%), Gaps = 7/139 (5%)
Query: 465 ITFSAALLAVLSKE-TLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523
+T A L +LS + AG + ++ ++ +VG +GAGK+SL AL + P G++
Sbjct: 348 VTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSL 406
Query: 524 IIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHL 580
I+G+++R L + R L+ + Q+P L GTLR N+ +P ++SDE + +ALE A +
Sbjct: 407 KINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNP--DASDEQLQQALENAWV 464
Query: 581 NTFVSNLPARLQHEVSEGG 599
+ F+ LP L + +
Sbjct: 465 SEFLPLLPQGLDTPIGDQA 483
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 7e-17
Identities = 43/105 (40%), Positives = 65/105 (61%), Gaps = 9/105 (8%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVL 402
G T++G GQRQ + +ARAL+RK +IL+ DEAT+A+D T Q+ + T +
Sbjct: 586 GGTLSG--GQRQRLLIARALVRKPRILLFDEATSALDNRT----QAIVSESLERLKVTRI 639
Query: 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
IAHRL+TI ++DR+ VLD G VV+ + LM + +F +A+
Sbjct: 640 VIAHRLSTIRNADRIYVLDAGRVVQQGTYDELM-AREGLFAQLAR 683
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 83.5 bits (207), Expect = 8e-17
Identities = 43/119 (36%), Positives = 68/119 (57%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
L+++ +V I+GR+G+GKS+L L +P G+I ++GV+I +L LR +++
Sbjct: 357 FNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISV 416
Query: 545 IPQDPVLFSGTLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q LFSGTLR NL ++SDE +W AL+ L + + P L + EGG L
Sbjct: 417 LTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475
|
Length = 573 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.6 bits (205), Expect = 1e-16
Identities = 71/237 (29%), Positives = 112/237 (47%), Gaps = 39/237 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
REG E +G+VG +G+GKS+L L ++ P+ G+II DG D+ G R R I Q+
Sbjct: 315 REG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRI--QM 371
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328
+F YS+ + P + + E PL I S +R A +
Sbjct: 372 ---VFQDPYSS------LNPRMTVGDIL------AE---PLRIHGGGSGAER--RARVAE 411
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L L + + + E ++G GQRQ + +ARAL + K+LILDE +A+D+ +
Sbjct: 412 LLELVGLPPEFLDRYPHE-LSG--GQRQRVAIARALALEPKLLILDEPVSALDV----SV 464
Query: 389 QSTI-------RSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
Q+ + + E T L I+H L + +DRV V+ G +VE + +N
Sbjct: 465 QAQVLNLLKDLQEELG-LTYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFEN 520
|
Length = 539 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 77.3 bits (191), Expect = 1e-16
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 4/86 (4%)
Query: 344 FGETVTGNV---GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EFAHC 399
F ++ N+ GQRQ + LARAL +IL+LDE + +D+E + + I + + A
Sbjct: 88 FSGSIAENILSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGA 147
Query: 400 TVLTIAHRLNTIIDSDRVLVLDKGLV 425
T + IAHR T+ +DR+LVL+ G V
Sbjct: 148 TRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 2e-16
Identities = 43/109 (39%), Positives = 65/109 (59%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +GAGKS+L L R +P G I++DGVD+R L LR+R+ ++PQDPVLF+
Sbjct: 369 VALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAA 428
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ +++DE + A AH + F+S LP + E G L
Sbjct: 429 SVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-16
Identities = 40/103 (38%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+RQ + +ARALL+ ILILDEAT+A+D+ET+ +++ + T IAHRL+T+
Sbjct: 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVR 534
Query: 413 DSDRVLVLDKGLVVE---FDSPSVLMKNKASIFYSMAKDAGLA 452
++DR+LV D G VVE FD + + F ++ + G+
Sbjct: 535 NADRILVFDNGRVVESGSFDE----LVARGGRFAALLRAQGML 573
|
Length = 588 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-16
Identities = 57/229 (24%), Positives = 93/229 (40%), Gaps = 44/229 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ GI+G G+GKS+L L +++P G +++DG DI +L L +L +PQ +
Sbjct: 29 EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAP 88
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF----YVATSRQ 328
F ++V E V L P R
Sbjct: 89 F--------------GLTVY-----------ELVL-LGRYPHLGLFGRPSKEDEEIVEEA 122
Query: 329 LKRLESVSRSPIYSHFGETVT---GNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
L+ L + V G QR + +ARAL ++T IL+LDE T+ +D+
Sbjct: 123 LELLG------LEHLADRPVDELSGGERQR--VLIARALAQETPILLLDEPTSHLDIAHQ 174
Query: 386 DLIQSTIRS--EFAHCTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSP 431
+ +R TV+ + H LN +D +++L G +V +P
Sbjct: 175 IEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 2e-16
Identities = 58/246 (23%), Positives = 98/246 (39%), Gaps = 50/246 (20%)
Query: 198 EVEFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+E ++ V Y E+ ++G GAGKS+L A+ +++P+ G I I
Sbjct: 4 MIEVENLTVSYGNRPVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 246 DGVDIRTLGLHTLRSRLTI--IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
G +R R RL I +PQ + P++V V L+
Sbjct: 64 FGKPVRKR-----RKRLRIGYVPQKSSVDRS------------FPITVK----DVVLLGR 102
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLA 361
K + ++ L+R +E + I G GQ+Q + LA
Sbjct: 103 YGKKGWFRRLNKKDKEKV----DEALERVGMEDLRDRQIGELSG-------GQKQRVLLA 151
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419
RAL + +L+LDE +D+ I ++ TVL + H L ++ DRV+
Sbjct: 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVIC 211
Query: 420 LDKGLV 425
L++ L+
Sbjct: 212 LNRHLI 217
|
Length = 254 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 5e-16
Identities = 39/110 (35%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS+L + R EP G I++DG D+ L +LR ++ ++ QD VLF+
Sbjct: 361 VALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFND 420
Query: 555 TLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ ++ I +AL A+ FV LP L + E G L
Sbjct: 421 TIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 6e-16
Identities = 38/106 (35%), Positives = 61/106 (57%), Gaps = 1/106 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V I+G +G+GKS+L L +++P G + +DGV + +L +R R+++ QD LF
Sbjct: 364 VAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDT 423
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
T+R NL +++DE +W ALE L ++ LP L + EGG
Sbjct: 424 TVRENLRLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGG 469
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 76.4 bits (189), Expect = 7e-16
Identities = 61/242 (25%), Positives = 103/242 (42%), Gaps = 48/242 (19%)
Query: 200 EFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +D V Y E + IVG GAGKS+L A+ +++P G+I + G
Sbjct: 1 EVEDLTVSYGGHPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK 307
+ R R+ +PQ I P+ + +V + LY + ++ K
Sbjct: 61 KPLEKE-----RKRIGYVPQ----RRSIDRDFPISVRDVV-LMGLYGHKGLFRRLSKADK 110
Query: 308 PLIITPFCSNLQRFYVATSRQLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLARALL 365
+ L+R L ++ I G GQ+Q + LARAL+
Sbjct: 111 AKVD---------------EALERVGLSELADRQIGELSG-------GQQQRVLLARALV 148
Query: 366 RKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDS-DRVLVLDKG 423
+ +L+LDE A +D +T + I +R T+L + H L +++ DRVL+L++
Sbjct: 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT 208
Query: 424 LV 425
+V
Sbjct: 209 VV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 79.1 bits (196), Expect = 2e-15
Identities = 26/76 (34%), Positives = 46/76 (60%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
VGQ Q + LARALL+ ++L+LDE TA++D ++ L+ + + T L + H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 412 IDSDRVLVLDKGLVVE 427
D++ V+ G +V+
Sbjct: 548 AQWDQIWVMQDGQIVQ 563
|
Length = 588 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 2e-15
Identities = 66/223 (29%), Positives = 99/223 (44%), Gaps = 37/223 (16%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQRQ + +A AL + +LI DE T A+D+ DL++ +++E +L I H L
Sbjct: 161 GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKE-LQAELG-MAILFITHDL 218
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA-------GLAWLAVRLET 460
+ +DRV V+ G +VE + L + A L A L
Sbjct: 219 GIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPLPEDAPVLLE 278
Query: 461 VGNL-ITF----------SAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLT 509
V +L + F L AV + L++ +G+VG +G+GKS+L
Sbjct: 279 VEDLRVWFPIKGGFLRRTVDHLRAVDG--------ISLTLRRGQTLGLVGESGSGKSTLG 330
Query: 510 LALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDP 549
LAL R+I G I DG DI L + LR R+ ++ QDP
Sbjct: 331 LALLRLIPS-QGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP 372
|
Length = 534 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 7e-15
Identities = 41/106 (38%), Positives = 59/106 (55%), Gaps = 1/106 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG +GAGKS++ LFR + G+I IDG DIR + +LR + I+PQD VLF+
Sbjct: 292 VAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND 351
Query: 555 TLRLNLDPVGES-SDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
T+ N+ + E + A E A ++ F+ +LP V E G
Sbjct: 352 TIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERG 397
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 72.0 bits (178), Expect = 8e-15
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V IVG +G+GKS+L L R+ +P G I+IDGVD+R L L +LR + +PQ
Sbjct: 29 EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQ 83
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.2 bits (187), Expect = 8e-15
Identities = 80/283 (28%), Positives = 135/283 (47%), Gaps = 50/283 (17%)
Query: 172 KEYGETPQEA-EWVNDKKPKDEWPEKGEVEF--KDYKVRYREGLELVGIVGRTGAGKSSL 228
K +GE PQ A +++ K++ EK + KD + EG E+ I+G +G+GKS++
Sbjct: 12 KIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEG-EIFVIMGLSGSGKSTM 70
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFVICYSTPVFIFVIV 287
L R+IEP G ++IDGVDI + LR R I V + F ++
Sbjct: 71 VRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQS------------FALM 118
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI--YSH-F 344
P + L T F L A R+ K L+++ + + Y+H +
Sbjct: 119 P----------------HMTVLDNTAFGMELAGI-NAEERREKALDALRQVGLENYAHSY 161
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC----- 399
+ ++G G RQ + LARAL IL++DEA +A+ D LI++ ++ E
Sbjct: 162 PDELSG--GMRQRVGLARALAINPDILLMDEAFSAL----DPLIRTEMQDELVKLQAKHQ 215
Query: 400 -TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
T++ I+H L+ + DR+ ++ G VV+ +P ++ N A+
Sbjct: 216 RTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPAN 258
|
Length = 400 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (189), Expect = 1e-14
Identities = 43/110 (39%), Positives = 62/110 (56%), Gaps = 3/110 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG TGAGKS+L L R+ +P G I+IDG DIRT+ +LR + ++ QD LF+
Sbjct: 364 VAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR 423
Query: 555 TLRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ VG +++DE + A E A + F+ P V E G L
Sbjct: 424 SIEDNIR-VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472
|
Length = 588 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 71.1 bits (175), Expect = 1e-14
Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQRQ + LARALL +L+LDE T+ +D + + + +R TV+ + H
Sbjct: 84 GQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELA 143
Query: 412 ID-SDRVLVLDKG 423
+DRV+VL G
Sbjct: 144 ELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-14
Identities = 39/119 (32%), Positives = 64/119 (53%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + VGIVGR+G+GKS+LT + R P +G +++DG D+ LR ++ +
Sbjct: 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80
Query: 545 IPQDPVLFSGTLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+ VLF+ ++R N+ E + +A +LA + F+S LP V E G L
Sbjct: 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.6 bits (184), Expect = 4e-14
Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 53/250 (21%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTL 258
+ R G + +G+VG +G+GKS+L LAL R+I G I DG DI L + L
Sbjct: 304 DGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPS-QGEIRFDGQDIDGLSRKEMRPL 361
Query: 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSN 317
R R+ ++ Q P L + V I E L + P S
Sbjct: 362 RRRMQVVFQ-------------------DPYGSLSPRMTVGQIIEE---GLRVHEPKLSA 399
Query: 318 LQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
+R R ++ LE V P + + +G GQRQ I +ARAL+ K ++++LDE
Sbjct: 400 AER----DQRVIEALEEVGLDPATRNRYPHEFSG--GQRQRIAIARALILKPELILLDEP 453
Query: 377 TAAIDLETDDLIQSTIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE-- 427
T+A+D +Q+ + + L I+H L + RV+V+ G +VE
Sbjct: 454 TSALDRS----VQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509
Query: 428 -----FDSPS 432
F +P
Sbjct: 510 PTEAVFANPQ 519
|
Length = 534 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 4e-14
Identities = 38/120 (31%), Positives = 66/120 (55%), Gaps = 2/120 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L++ + IVG +G+GKS+L L + G I+++G ++ + HTLR +
Sbjct: 493 ISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINY 552
Query: 545 IPQDPVLFSGTLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+PQ+P +FSG++ NL S + IW A E+A + + N+P Q E+SE G ++
Sbjct: 553 LPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 8e-14
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALL IL+LDE T+A+D+ +++ ++ +R T++ I HR + +
Sbjct: 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLD 203
Query: 413 DSDRVLVLDKGLVV 426
DR++V+D G +V
Sbjct: 204 LVDRIIVMDSGRIV 217
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 2e-13
Identities = 37/108 (34%), Positives = 56/108 (51%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG TG+GKS+L L +G I +DG + +L LR + ++ QDPV+ +
Sbjct: 370 VALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD 429
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T N+ + S+E +W+ALE L +LP L + E G NL
Sbjct: 430 TFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477
|
Length = 592 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 64/226 (28%), Positives = 103/226 (45%), Gaps = 49/226 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+++GI G TG+GKS+L + R + ++G I + + L L + RSRL ++ Q
Sbjct: 342 QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQ----- 396
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFYVATSRQLK 330
TP +F++ V I P + + +VA
Sbjct: 397 ------TP-------------------FLFSDTVANNIALGRPDATQQEIEHVA------ 425
Query: 331 RLESVS----RSP--IYSHFGE---TVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
RL SV R P + GE ++G QR I +ARALL +ILILD+A +A+D
Sbjct: 426 RLASVHDDILRLPQGYDTEVGERGVMLSGGQKQR--ISIARALLLNAEILILDDALSAVD 483
Query: 382 LETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
T+ I +R TV+ AHRL+ + ++ +LV+ G + +
Sbjct: 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQ 529
|
Length = 569 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 72.1 bits (177), Expect = 4e-13
Identities = 42/111 (37%), Positives = 65/111 (58%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVG +G+GKS+LT L R+ P G +++DGVD+ LR ++ ++ Q+ VLFS
Sbjct: 486 IGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR 545
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ +P + E + A +LA + F+S LP EV E G NL
Sbjct: 546 SIRDNIALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (175), Expect = 6e-13
Identities = 36/80 (45%), Positives = 60/80 (75%), Gaps = 4/80 (5%)
Query: 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTV 401
+G++++G GQ+Q I +ARALLR+ KIL+LDEAT+++D ++ LI+ TI + A T+
Sbjct: 1355 YGKSLSG--GQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTI 1412
Query: 402 LTIAHRLNTIIDSDRVLVLD 421
+TIAHR+ +I SD+++V +
Sbjct: 1413 ITIAHRIASIKRSDKIVVFN 1432
|
Length = 1466 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 66.3 bits (163), Expect = 9e-13
Identities = 35/79 (44%), Positives = 51/79 (64%), Gaps = 4/79 (5%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQSTIRSEFAH-CTVLTIAHRL 408
+VG+RQ++ +ARAL R ++LILDE TAA+ E + L + IR A V+ I+HRL
Sbjct: 84 SVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFK-VIRRLRAQGVAVIFISHRL 142
Query: 409 NTIID-SDRVLVLDKGLVV 426
+ + + +DRV VL G VV
Sbjct: 143 DEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-12
Identities = 61/227 (26%), Positives = 102/227 (44%), Gaps = 32/227 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E+V I+G +GAGKS+L +L +++P G I+ +GV I L L LR + +I Q
Sbjct: 31 EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQF 90
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ- 328
+ + V+ V +L S S F Q
Sbjct: 91 NLV--------PRLSVLENV-LLGRLGYTSTWR-------------SLFGLFSKEDKAQA 128
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L LE V T++G GQ+Q + +ARAL+++ KI++ DE A++D E+ +
Sbjct: 129 LDALERVGILDKAYQRASTLSG--GQQQRVAIARALVQQPKIILADEPVASLDPESAKKV 186
Query: 389 QSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
++ TV+ H+++ +DR++ L G +V FD P+
Sbjct: 187 MDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIV-FDGPA 232
|
Length = 258 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 5/71 (7%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--A 270
V IVG +G+GKS++ LFR + + G+I+IDG DIR + L +LR + ++PQ VL
Sbjct: 30 VAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFND 89
Query: 271 TI-FVICYSTP 280
TI + I Y P
Sbjct: 90 TIGYNIRYGRP 100
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 69.1 bits (170), Expect = 3e-12
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + LARALLR IL+LDE T+A+D +++ + ++ A T++ + HR + +
Sbjct: 605 GQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLD 664
Query: 413 DSDRVLVLDKGLVV 426
DR++V+D G +V
Sbjct: 665 LVDRIIVMDNGRIV 678
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 66.0 bits (162), Expect = 4e-12
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST---IRSEFAHCTVLTIAHRLN 409
GQRQ + +ARAL K+LI DE T+A+D+ I ++ E T+L I H L
Sbjct: 149 GQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELG-LTLLFITHDLG 207
Query: 410 TI-IDSDRVLVLDKGLVVEF 428
+ +DRV V+ G +VE
Sbjct: 208 VVAKIADRVAVMYAGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 66.1 bits (162), Expect = 4e-12
Identities = 62/233 (26%), Positives = 106/233 (45%), Gaps = 44/233 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E V ++G +GAGKS+L L ++EP G+++IDG DI L L LR ++ +I Q
Sbjct: 28 EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQF 87
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI-----ITPFCSNLQRFYVA 324
+I +SVL E+V L + + S F
Sbjct: 88 N--------------LIERLSVL-----------ENV--LSGRLGRRSTWRSLFGLFPKE 120
Query: 325 -TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
R L LE V + ++G GQ+Q + +ARAL+++ K+++ DE A++D
Sbjct: 121 EKQRALAALERVGLLDKAYQRADQLSG--GQQQRVAIARALMQQPKLILADEPVASLDPA 178
Query: 384 TDDLIQSTIRSEFAH---CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ + ++ TV+ H+++ + +DR++ L G +V FD P
Sbjct: 179 SSRQVMDLLK-RINREEGITVIVSLHQVDLAREYADRIVGLKDGRIV-FDGPP 229
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 5e-12
Identities = 28/67 (41%), Positives = 45/67 (67%)
Query: 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVL 67
R S+ +H +LR++ MSFFDTTP+GR+++RFS+D++ +D+ LP + CLFS+
Sbjct: 1028 RGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSIC 1087
Query: 68 YLMPVTI 74
+ VT
Sbjct: 1088 SSILVTS 1094
|
Length = 1560 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 64.2 bits (157), Expect = 5e-12
Identities = 22/65 (33%), Positives = 37/65 (56%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I+G +G+GKS+L + ++ P G + +DG DI + L + +PQD LFSG
Sbjct: 31 LAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDDELFSG 90
Query: 555 TLRLN 559
++ N
Sbjct: 91 SIAEN 95
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 65.2 bits (159), Expect = 7e-12
Identities = 34/107 (31%), Positives = 61/107 (57%), Gaps = 1/107 (0%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
+VG +G+GKS++ L +P G +++DG I L S+++++ Q+PVLF+ +L
Sbjct: 45 LVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSL 104
Query: 557 RLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ N+ + S E + +A + AH ++F+S L + EV E G L
Sbjct: 105 QDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQL 151
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 8e-12
Identities = 36/109 (33%), Positives = 62/109 (56%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G+GKS++ L + +P G +++DGV + H L ++ ++ Q+PVLFSG
Sbjct: 510 VALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG 569
Query: 555 TLRLNLD-PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++R N+ + ++ DE I A + A+ + F+ P EV E G L
Sbjct: 570 SVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 1e-11
Identities = 30/94 (31%), Positives = 52/94 (55%), Gaps = 2/94 (2%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404
G ++G G+R+ + LARALL + +LDE T +D T+ + + + T+L +
Sbjct: 472 GRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMV 529
Query: 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNK 438
HRL + DR++VLD G ++E + + L+ N
Sbjct: 530 THRLRGLERMDRIIVLDNGKIIEEGTHAELLANN 563
|
Length = 573 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 1e-11
Identities = 30/65 (46%), Positives = 49/65 (75%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
IVG +GAGKS+L + R+I+P +G+I+IDGVDI+T+ + LR ++ ++ Q P LF GT+
Sbjct: 34 IVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTV 93
Query: 557 RLNLD 561
+ N++
Sbjct: 94 KDNIE 98
|
Length = 241 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 65.7 bits (161), Expect = 1e-11
Identities = 59/242 (24%), Positives = 100/242 (41%), Gaps = 46/242 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTLG---LHTLR-SRLT 263
E++GIVG +G+GKS L A+ ++ G I+ DG D+ +L L +R +
Sbjct: 32 EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIA 91
Query: 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+I Q P++ L + + E L +
Sbjct: 92 MIFQ-------------------DPMTSLNPVMTIGDQIAE---VLRL---HGKGLSKKE 126
Query: 324 ATSRQLKRLESV---SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAI 380
A R ++ LE V + ++G + QR +I + AL K+LI DE T A+
Sbjct: 127 AKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAM--ALALNPKLLIADEPTTAL 184
Query: 381 DLETD----DLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435
D+ DL++ ++ E ++ I H L + + +DRV V+ G +VE +
Sbjct: 185 DVTVQAQILDLLKE-LQREK-GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIF 242
Query: 436 KN 437
KN
Sbjct: 243 KN 244
|
Length = 316 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 2e-11
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E+V +VG G+GKS+L A+ +++P G I+IDG DI L L LR R+ +PQ
Sbjct: 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 64.0 bits (157), Expect = 2e-11
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 65/246 (26%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V ++GR GAGK++L + ++ P G II DG DI L H R+RL I
Sbjct: 30 EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE-RARLGI-------- 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIF----TEDVKPLIITPFCSNLQRFYVATSRQ 328
VP + IF E+ NL A +
Sbjct: 81 ------------AYVP--------EGRRIFPRLTVEE-----------NLLLGAYARRDK 109
Query: 329 LKRLESVSRSPIYSHF----------GETVTGNVGQRQLICLARALLRKTKILILDEATA 378
+ + +Y F T++G G++Q++ +ARAL+ + K+L+LDE +
Sbjct: 110 EAQERDLEE--VYELFPRLKERRNQRAGTLSG--GEQQMLAIARALMSRPKLLLLDEPSE 165
Query: 379 ----AIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
I E + I+ + T+L + ++ +DR VL+ G +V + +
Sbjct: 166 GLAPKIVEEIFEAIKELRKEGGM--TILLVEQNARFALEIADRGYVLENGRIVLSGTAAE 223
Query: 434 LMKNKA 439
L+ +
Sbjct: 224 LLADPD 229
|
Length = 237 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-11
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399
+ ++ G +G G+RQ + LAR LL+ I++LDE T +D T+ + S I
Sbjct: 91 LRNNLGRRFSG--GERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDK 148
Query: 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
T++ I H L I D++L L+ G ++
Sbjct: 149 TLIWITHHLTGIEHMDKILFLENGKIIM 176
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 62.6 bits (153), Expect = 2e-11
Identities = 32/92 (34%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 341 YSHFGETVTGNV------GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394
+ H TV N+ GQ+Q + LARAL +L+LDE T+A+D T +++ ++S
Sbjct: 88 FPHL--TVLENIALGLSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKS 145
Query: 395 EFAH--CTVLTIAHRLNTIID-SDRVLVLDKG 423
A TV+ + H L+ +DRV+VL G
Sbjct: 146 LQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 3e-11
Identities = 32/76 (42%), Positives = 51/76 (67%), Gaps = 1/76 (1%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ+Q I LARALL +K+LILDE+T+ +D T+ I + + + T++ +AHRL+
Sbjct: 614 GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVA 672
Query: 412 IDSDRVLVLDKGLVVE 427
SD+++VLD G ++E
Sbjct: 673 KQSDKIIVLDHGKIIE 688
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 4e-11
Identities = 21/55 (38%), Positives = 35/55 (63%), Gaps = 2/55 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407
G++Q + AR LL K K + LDEAT+A+D E++D + ++ TV+++ HR
Sbjct: 95 GEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELGI--TVISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 62/245 (25%), Positives = 109/245 (44%), Gaps = 39/245 (15%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
E + K+ + G V I+G TG+GKS L + I+P G I+++G DI L
Sbjct: 11 KEFKLKNVSLEVERGDYFV-ILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNL--P 67
Query: 257 TLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS 316
+ ++ +PQ + + P +Y I L + K
Sbjct: 68 PEKRDISYVPQN---------------YALFPHMTVYKNIAYGLKKRKVDKK-------- 104
Query: 317 NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEA 376
++R + + L ++R P ET++G G++Q + +ARAL+ KIL+LDE
Sbjct: 105 EIERKVLEIAEMLGIDHLLNRKP------ETLSG--GEQQRVAIARALVVNPKILLLDEP 156
Query: 377 TAAIDLETDDLIQS---TIRSEFAHCTVLTIAHRLNTI-IDSDRVLVLDKGLVVEFDSPS 432
+A+D+ T + ++ IR EF TVL + H +D+V ++ G +++ P
Sbjct: 157 FSALDVRTKEKLREELKKIRKEFG-VTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPE 215
Query: 433 VLMKN 437
+ K
Sbjct: 216 EVFKK 220
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 65.4 bits (159), Expect = 6e-11
Identities = 30/43 (69%), Positives = 36/43 (83%)
Query: 453 WLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQV 495
WLAVRLE VGN I AAL AV+S+ +L+AGLVGLSVSY++QV
Sbjct: 1190 WLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQV 1232
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 6e-11
Identities = 35/119 (29%), Positives = 64/119 (53%), Gaps = 5/119 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L++ +V +VG +G+GKS++ + + +P G I+ DG+ + L + + ++
Sbjct: 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVD 559
Query: 547 QDPVLFSGTLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
QD LF GT+R NL DP D + +A + A ++ +++ P E++EGG NL
Sbjct: 560 QDIFLFEGTVRDNLTLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 6e-11
Identities = 59/218 (27%), Positives = 96/218 (44%), Gaps = 39/218 (17%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAI-DLETDDLIQSTIRSEFAHC--TVLTIAHRL 408
VG++Q + + +AL R ++LILDE TA + E D+L + +R A T++ I H+L
Sbjct: 143 VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFE-ILRR-LAAEGKTIIFITHKL 200
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITF 467
++ +DRV VL +G VV + LA L VG +
Sbjct: 201 KEVMAIADRVTVLRRGKVVG--------------TVDPVAETTEEELA-EL-MVGREVVL 244
Query: 468 SAALLAVLSKETL----------NAGLVGL-SVSYAMQ----VGIVGRTGAGKSSLTLAL 512
E + G+ + VS+ ++ VGI G G G+S L A+
Sbjct: 245 RVVKPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAI 304
Query: 513 FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQD 548
+ +PA G I+++G D+ R RL + +P+D
Sbjct: 305 SGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPED 342
|
Length = 501 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 7e-11
Identities = 62/240 (25%), Positives = 108/240 (45%), Gaps = 44/240 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ I+G +G+GKS+ L R+IEP G I IDG +I
Sbjct: 20 EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQ------------------- 60
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+PV + + + F Q +L + L T L + R+ K L
Sbjct: 61 ------SPVELREVRRKKIGMVFQQFALFPHMTI--LQNTSLGPELLG-WPEQERKEKAL 111
Query: 333 ESVSRS--PIYSH-FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
E + Y H + + ++G G +Q + LARAL + IL++DEA +A+ D LI+
Sbjct: 112 ELLKLVGLEEYEHRYPDELSG--GMQQRVGLARALAAEPDILLMDEAFSAL----DPLIR 165
Query: 390 STIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+++ E T++ I H L+ I DR++++ G +V+ +P +++N A+ +
Sbjct: 166 DSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 8e-11
Identities = 55/194 (28%), Positives = 84/194 (43%), Gaps = 42/194 (21%)
Query: 199 VEFKDYKV------RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
VEF D V REG LVG+VG GAGK++L A+ + P GT+++ G D+
Sbjct: 11 VEFGDTTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEA 69
Query: 253 LGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT 312
L R+ +PQ SL F DV+ ++
Sbjct: 70 LSARAASRRVASVPQ-----------------------------DTSLSFEFDVRQVVEM 100
Query: 313 PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLRKT 368
+ RF T +E + F + +++G G+RQ + LARAL + T
Sbjct: 101 GRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSG--GERQRVLLARALAQAT 158
Query: 369 KILILDEATAAIDL 382
+L+LDE TA++D+
Sbjct: 159 PVLLLDEPTASLDI 172
|
Length = 402 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 60/234 (25%), Positives = 104/234 (44%), Gaps = 46/234 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E V I+G +GAGKS+L + R++EP+ G+I+++G DI L L LR R+ +I Q
Sbjct: 29 EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHY 88
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TSRQ 328
+I ++VL + L + + L L RF R
Sbjct: 89 N--------------LIERLTVLENVLHGRLGYKPTWRSL--------LGRFSEEDKERA 126
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L LE V + + ++G GQ+Q + +ARAL ++ +++ DE A++D +T +
Sbjct: 127 LSALERVGLADKAYQRADQLSG--GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQV 184
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIID----------SDRVLVLDKGLVVEFDSPS 432
++ + + II+ +DR++ L G +V FD
Sbjct: 185 MDYLKR-------INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIV-FDGAP 230
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 1e-10
Identities = 54/218 (24%), Positives = 95/218 (43%), Gaps = 36/218 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E V +VG +GAGKS+L +++ P GTI ++G D+ L + LR ++ ++ Q
Sbjct: 28 EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQD- 86
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
F + V+ V + V V P I R V + +L
Sbjct: 87 ---FRLLPDRNVYENVAFALEVTG------------VPPREI--------RKRVPAALEL 123
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
L R+ ++G G++Q + +ARA++ ILI DE T +D +T I
Sbjct: 124 VGLSHKHRA-----LPAELSG--GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIM 176
Query: 390 STIRSEFAHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425
+ ++ T + +A ++D RV+ L++G +
Sbjct: 177 NLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 62/281 (22%), Positives = 115/281 (40%), Gaps = 67/281 (23%)
Query: 188 KPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
K + ++ D + ++G E + I+GR G+GKS++ + ++ P++G + +DG
Sbjct: 13 KYESNEESTEKLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDG 71
Query: 248 VDIRTLG-LHTLRSRLTII---P--QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLI 301
+D L +R++ ++ P Q++AT I
Sbjct: 72 LDTSDEENLWDIRNKAGMVFQNPDNQIVAT-----------------------------I 102
Query: 302 FTEDV---------KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352
EDV P I R + L+ V H ++G
Sbjct: 103 VEEDVAFGPENLGIPPEEIR-------------ERVDESLKKVGMYEYRRHAPHLLSG-- 147
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +A L + + +I DE TA +D + +TI+ ++ T++ I H +
Sbjct: 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEE 207
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+++DR++V+D G VV +P + K M K GL
Sbjct: 208 AVEADRIIVMDSGKVVMEGTPKEIFKE-----VEMMKKIGL 243
|
Length = 280 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 1e-10
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I+G +G+GKS+L + I P G++ +DG D++ T + +PQD LF G
Sbjct: 347 LAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPG 406
Query: 555 TLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ GE++D E I +A +LA ++ + LP + GG L
Sbjct: 407 TVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 60.1 bits (147), Expect = 1e-10
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 7/79 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LARAL ++ IL+LDE T+ +D+ E +L++ R TV+ + H L
Sbjct: 101 GERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARER--GKTVVMVLHDL 158
Query: 409 NTIID-SDRVLVLDKGLVV 426
N +DRV++L G +V
Sbjct: 159 NLAARYADRVILLKDGRIV 177
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 34/77 (44%), Positives = 43/77 (55%), Gaps = 13/77 (16%)
Query: 196 KGEVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
KG VEF D Y R+G+ + V IVG TGAGKS+L L R+ +P G
Sbjct: 332 KGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGR 391
Query: 243 IIIDGVDIRTLGLHTLR 259
I+IDG DIRT+ +LR
Sbjct: 392 ILIDGTDIRTVTRASLR 408
|
Length = 588 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 59.6 bits (145), Expect = 2e-10
Identities = 24/53 (45%), Positives = 34/53 (64%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547
V +VG G+GKS+L A+ +++P G I+IDG DI L L LR R+ +PQ
Sbjct: 28 VALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 62.7 bits (153), Expect = 2e-10
Identities = 33/79 (41%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI---QSTIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL KIL+ DEAT+A+D ET I I E T++ I H +
Sbjct: 145 GQKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINREL-GLTIVLITHEME 203
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ DRV VLD+G +VE
Sbjct: 204 VVKRICDRVAVLDQGRLVE 222
|
Length = 339 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 33/85 (38%), Positives = 48/85 (56%), Gaps = 5/85 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V ++GRTG GKS+L L R +P G I+++G I LR ++++ Q LFS
Sbjct: 369 VALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSA 428
Query: 555 TLRLNL---DPVGESSDEAIWKALE 576
TLR NL P +SDEA+ + L+
Sbjct: 429 TLRDNLLLAAP--NASDEALIEVLQ 451
|
Length = 574 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 63.2 bits (154), Expect = 2e-10
Identities = 60/219 (27%), Positives = 105/219 (47%), Gaps = 29/219 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+RQ + +A ALL + ++LI DE T A+D+ I +R + + +L I H L+
Sbjct: 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSI 219
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSA 469
+ +DRV V+ G VE + + L + ++ + V L ++
Sbjct: 220 VRKLADRVAVMQNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGDPVPLPEP------AS 273
Query: 470 ALLAV------------LSKETLNAGLVGLSVSYAMQ----VGIVGRTGAGKSSLTLALF 513
LL V + K T++ +V ++S+ ++ +G+VG +G+GKS+ LAL
Sbjct: 274 PLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALL 333
Query: 514 RIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
R+I + G I DG + L L +R R+ ++ QDP
Sbjct: 334 RLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP 371
|
Length = 529 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 3e-10
Identities = 27/83 (32%), Positives = 41/83 (49%), Gaps = 14/83 (16%)
Query: 199 VEFKDYKVRYR--------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
VEFK+ RY E V +VG +G+GKS+L + R + G I+
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQ 267
IDG D+R L +LR ++ ++ Q
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQ 83
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 3e-10
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E+VGI+G GAGKS+L L +++P+ G I++DG D+ +L L ++ +PQ L
Sbjct: 26 EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQALE 83
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 3/89 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L +IL+LDE TA +D + + ++ E T++ + H L
Sbjct: 142 GQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLEL 201
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNK 438
+++ +DRV+VLD G ++ P+ + +
Sbjct: 202 VLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 58/230 (25%), Positives = 99/230 (43%), Gaps = 46/230 (20%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI---- 264
R G E+VG++G GAGK++L + +P+ GT+I G DI L H +RL I
Sbjct: 28 RPG-EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARLGIARTF 85
Query: 265 -IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
I ++ + V+ V + + + R
Sbjct: 86 QITRLFPGLTVL---ENVAVGAHARLGLSGLL---------------------GRPRARK 121
Query: 324 ATSRQLKR----LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEAT 377
+R LE V + GN+ GQ++ + +ARAL + K+L+LDE
Sbjct: 122 EEREARERARELLEFVG----LGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPA 177
Query: 378 AAIDL-ETDDLIQ--STIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
A ++ ET++L + +R T+L I H + ++ +DR++VL+ G
Sbjct: 178 AGLNPEETEELAELIRELRDRG-GVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 5e-10
Identities = 30/85 (35%), Positives = 44/85 (51%), Gaps = 17/85 (20%)
Query: 199 VEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGT 242
+EFK+ RY G + V +VG +G GKS++ L R +P G
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGE 59
Query: 243 IIIDGVDIRTLGLHTLRSRLTIIPQ 267
I++DGVDIR L L LRS++ ++ Q
Sbjct: 60 ILLDGVDIRDLNLRWLRSQIGLVSQ 84
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.8 bits (150), Expect = 5e-10
Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V V IVG TGAGK++L L R+ +P G I+IDG+DI T+ +LR +
Sbjct: 354 VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIAT 413
Query: 545 IPQDPVLFSGTLRLNLDPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD LF+ ++R N+ E ++DE +++A + A + F+ V E G L
Sbjct: 414 VFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-10
Identities = 38/109 (34%), Positives = 58/109 (53%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GI+G +G+GKS+L L I P G++ +DG D+R L + +PQD LF G
Sbjct: 365 LGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDG 424
Query: 555 TLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ GE +D E + +A LA ++ + LP + EGG L
Sbjct: 425 TIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATL 473
|
Length = 580 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 5e-10
Identities = 33/92 (35%), Positives = 50/92 (54%), Gaps = 11/92 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH------CTVLTIAH 406
GQRQ I +ARAL+ + K+LILDE T+A+D+ +Q+ I + T L I+H
Sbjct: 145 GQRQRIAIARALIPEPKLLILDEPTSALDV----SVQAQILNLLLELKKERGLTYLFISH 200
Query: 407 RLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
L + DR+ V+D G +VE L+ +
Sbjct: 201 DLALVEHMCDRIAVMDNGQIVEIGPTEELLSH 232
|
Length = 252 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 61.5 bits (150), Expect = 6e-10
Identities = 28/121 (23%), Positives = 52/121 (42%), Gaps = 14/121 (11%)
Query: 160 DVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL------- 212
A +++ E+P A + +K + E+ ++ RY +G
Sbjct: 283 AAAAGEAAADKLFTLLESP-VATPGSGEKAEVANEPPIEISLENLSFRYPDGKPALSDLN 341
Query: 213 ------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
+L +VG +GAGKS+L L + P G I ++G+D+R L R +++ +
Sbjct: 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVS 401
Query: 267 Q 267
Q
Sbjct: 402 Q 402
|
Length = 559 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 61.8 bits (151), Expect = 6e-10
Identities = 29/86 (33%), Positives = 48/86 (55%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+++ + +ARALL +L+LDE T +D ET+ I + + TVL I HRL +
Sbjct: 479 GEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE 538
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
DR+ V+D G ++E + L+ +
Sbjct: 539 QFDRICVMDNGQIIEQGTHQELLAQQ 564
|
Length = 574 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 7e-10
Identities = 24/78 (30%), Positives = 45/78 (57%)
Query: 74 ITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKL 133
VF Y +S+G + A++ LH+ LL + LR FF+ TP G +++RFS +++T+D+ +
Sbjct: 1020 FAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMI 1079
Query: 134 TLSVQQTLSQPFKITQTL 151
++ + F + L
Sbjct: 1080 PPVIKMFMGSLFNVIGAL 1097
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (150), Expect = 7e-10
Identities = 43/145 (29%), Positives = 75/145 (51%), Gaps = 4/145 (2%)
Query: 7 IRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSV 66
+R +K + + + IL C + TT V R+ S + T S ++ + ++++
Sbjct: 902 MRYNKAVGGLWVVMILLVC---YLTTEVLRVSSSTWLSIWTDQSTPKSYSPGFYIVVYAL 958
Query: 67 LYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDV 126
L V +T F F + +L AAKRLH+ +L S+LR LFF T P GRV++RFS D+
Sbjct: 959 LGFGQVAVT-FTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDI 1017
Query: 127 NTLDNKLTLSVQQTLSQPFKITQTL 151
+D + + ++Q +++ T
Sbjct: 1018 GDIDRNVANLMNMFMNQLWQLLSTF 1042
|
Length = 1495 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 7e-10
Identities = 61/228 (26%), Positives = 94/228 (41%), Gaps = 47/228 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E VG++GR+G GKS+L L + +PA GT+ G D+ L R + + + +
Sbjct: 38 ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD----RKQRRAFRRDVQLV 93
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
F S + P + I L + S Q R
Sbjct: 94 FQDSPSA------VNPRMTVRQIIGEPLRHLTSLD-----------------ESEQKARI 130
Query: 332 ---LESVS-RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
L+ V RS ++G GQ Q I +ARAL K K+++LDEA + +D+ +
Sbjct: 131 AELLDMVGLRSEDADKLPRQLSG--GQLQRINIARALAVKPKLIVLDEAVSNLDM----V 184
Query: 388 IQSTI-------RSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
+Q+ I + F + I H L + RV V+DKG +VE
Sbjct: 185 LQAVILELLRKLQQAFGTAYLF-ITHDLRLVQSFCQRVAVMDKGQIVE 231
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 32/91 (35%), Positives = 56/91 (61%), Gaps = 3/91 (3%)
Query: 61 NCLFSVLYLMPVTITVF-FYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVL 119
N ++++L V +T+ Y ++S +L+AAKRLH+ +L S+LR FF T P+GR++
Sbjct: 956 NLIYALLSFGQVLVTLLNSYWLIMS--SLYAAKRLHDAMLGSILRAPMSFFHTNPLGRII 1013
Query: 120 SRFSSDVNTLDNKLTLSVQQTLSQPFKITQT 150
+RF+ D+ +D + + V L Q F++ T
Sbjct: 1014 NRFAKDLGDIDRNVAVFVNMFLGQIFQLLST 1044
|
Length = 1622 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 8e-10
Identities = 32/86 (37%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61
L S+ A+K LH +L +IL + MSFF T P+GR+I+RF++D+ +D N+ F+ ++
Sbjct: 977 LIMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLG 1036
Query: 62 CLFSVLYLMPVTITVFFYGFV--ISL 85
+F +L T G V ISL
Sbjct: 1037 QIFQLLS------TFVLIGIVSTISL 1056
|
Length = 1622 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 61.4 bits (150), Expect = 8e-10
Identities = 34/117 (29%), Positives = 56/117 (47%), Gaps = 18/117 (15%)
Query: 166 VAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRY---------------RE 210
A++ + E + P E + +GE+EF++ Y R
Sbjct: 433 TALQSLDELMQLPVERP--EGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRP 490
Query: 211 GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
G E V I+GR G+GKS+L L + +P +G++++DGVDIR + LR + +PQ
Sbjct: 491 G-EKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQ 546
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 8e-10
Identities = 58/237 (24%), Positives = 101/237 (42%), Gaps = 51/237 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V I+G GAGKS+L AL + P G + ++G + L R ++PQ
Sbjct: 29 EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQ----- 83
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+S+ F P +V E+V + P + + L ++
Sbjct: 84 ----HSSLSF-----PFTV------------EEVVAMGRAPHGLSRAEDDALVAAALAQV 122
Query: 333 ESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLR------KTKILILDEATAAIDL 382
+ +H ++G G++Q + LAR L + + L+LDE T+A+DL
Sbjct: 123 DL-------AHLAGRDYPQLSG--GEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDL 173
Query: 383 ETDDLIQSTIRSEFAH---CTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSPS-VL 434
+ R + AH V+ + H LN +DR+++L +G +V +P+ VL
Sbjct: 174 AHQHHVLRLAR-QLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 57.8 bits (141), Expect = 8e-10
Identities = 25/75 (33%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
G +Q + LA+ALL ++LILDE T+ +D E+ +R T+L +H L
Sbjct: 99 GMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEA 158
Query: 412 ID-SDRVLVLDKGLV 425
DRV +L+ G +
Sbjct: 159 ERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-09
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536
KE + + V +VGR+G+GKS++ L R + +G I++DG D+R L
Sbjct: 354 KEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLA 413
Query: 537 TLRSRLTIIPQDPVLFSGTLRLNLDPVGES--SDEAIWKALELAHLNTFVSNLPARLQHE 594
+LR+++ ++ Q+ LF+ T+ N+ S E I +A +A+ F++ + L
Sbjct: 414 SLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV 473
Query: 595 VSEGGENL 602
+ E G L
Sbjct: 474 IGENGVLL 481
|
Length = 582 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 1e-09
Identities = 36/113 (31%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
V IVG +G+GKS+L R++ P G++ DG D+ L + +R +L ++ Q+
Sbjct: 482 VAIVGPSGSGKSTL----LRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGR 537
Query: 551 LFSGTLRLNL-DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
L SG++ N+ + DEA W+A +A L + +P + +SEGG L
Sbjct: 538 LMSGSIFENIAGGAPLTLDEA-WEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 1e-09
Identities = 26/66 (39%), Positives = 40/66 (60%), Gaps = 1/66 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ ++GR+G+GKS+L L ++P G I +DGV + L L S ++++ Q P LF
Sbjct: 31 IALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDLE-KALSSLISVLNQRPYLFDT 89
Query: 555 TLRLNL 560
TLR NL
Sbjct: 90 TLRNNL 95
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 1e-09
Identities = 34/85 (40%), Positives = 53/85 (62%), Gaps = 4/85 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQS--TIRSEFAHCTVLTIAHRLN 409
GQ+Q + +A A+ + KI+ILDEAT+ +D E +LI++ IR ++ TV++I H L+
Sbjct: 144 GQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDY-QMTVISITHDLD 202
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVL 434
+ SDRVLV+ G V +P L
Sbjct: 203 EVALSDRVLVMKNGQVESTSTPREL 227
|
Length = 279 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (143), Expect = 1e-09
Identities = 57/215 (26%), Positives = 98/215 (45%), Gaps = 30/215 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E +GI+G+ G+GKS+L L L ++ P G +++ G+D S+L I +++ +
Sbjct: 29 EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDF------SKLQGIRKLVGIV 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F P FV V + L F + L + R + R
Sbjct: 83 F----QNPETQFVGRTV-------EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYR- 130
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
RSP +T++G GQ Q + LA L + + LI DE T+ +D ++ + I
Sbjct: 131 ---HRSP------KTLSG--GQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERI 179
Query: 393 RSEFAHC-TVLTIAHRLNTIIDSDRVLVLDKGLVV 426
+ T++ I H L + D+DR++V+D+G +V
Sbjct: 180 KKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIV 214
|
Length = 274 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 58.1 bits (141), Expect = 1e-09
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 40/219 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++ L ++EP G +DG D ++ + +
Sbjct: 32 EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFD-------VVKEPA----EARRRL 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK-R 331
+ ST ++ + ++ YF Y +L R
Sbjct: 81 GFVSDSTGLYDRLTARENLEYF------------------------AGLYGLKGDELTAR 116
Query: 332 LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID-LETDDLI 388
LE ++ + G G RQ + +ARAL+ +L+LDE T +D + T L
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
+ + +L H + + DRV+VL +G VV
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVV 215
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 2e-09
Identities = 32/70 (45%), Positives = 50/70 (71%), Gaps = 2/70 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT--IAHRLNT 410
GQ+Q I +ARA++R KILILDEAT+++D +++ L+Q TI + + +T IAHRL+T
Sbjct: 583 GQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLST 642
Query: 411 IIDSDRVLVL 420
I ++ + VL
Sbjct: 643 IRYANTIFVL 652
|
Length = 1466 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFAHCTVLT 403
G T++G GQRQ I LARAL K+++LDE + +D E + L + + TV+
Sbjct: 452 GATLSG--GQRQRIALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVV 509
Query: 404 IAHRLNTIIDSDRVLVLDKGLVVEF 428
I HR + + D++LVL G + F
Sbjct: 510 ITHRPSLLGCVDKILVLQDGRIARF 534
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 66/223 (29%), Positives = 106/223 (47%), Gaps = 37/223 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E +G+VG +G+GKS+ LAL R+I + G I DG + L L +R R+ ++ Q
Sbjct: 313 ETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQD- 370
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
P S L + V I E ++ + P S QR + +
Sbjct: 371 ------------------PNSSLNPRLNVLQIIEEGLR--VHQPTLSAAQR----EQQVI 406
Query: 330 KRLESVSRSPIYSH-FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+E V P H + +G GQRQ I +ARAL+ K ++ILDE T+++D I
Sbjct: 407 AVMEEVGLDPETRHRYPAEFSG--GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 389 QSTIRS--EFAHCTVLTIAHRLNTIIDS--DRVLVLDKGLVVE 427
+ ++S + L I+H L+ ++ + +V+VL +G VVE
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLH-VVRALCHQVIVLRQGEVVE 506
|
Length = 529 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-09
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFAHCTVLT 403
G T++G GQRQ I LARAL +++LDE + +D E + L + + ++ TV+
Sbjct: 470 GATLSG--GQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVV 527
Query: 404 IAHRLNTIIDSDRVLVLDKGLVVEFDS 430
IAHR + + D++LVL G + F
Sbjct: 528 IAHRPSALASVDKILVLQDGRIAAFGP 554
|
Length = 580 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 58/229 (25%), Positives = 95/229 (41%), Gaps = 41/229 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ I+G GAGKS+L AL + P G + ++GV + + L ++PQ
Sbjct: 28 EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQ----- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
S+ F F + V +Q+ I P R R +
Sbjct: 83 ----NSSLAFPFTVQEV------VQMGRI------PH-------RSGREPEEDERIAAQA 119
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT------KILILDEATAAIDLETD 385
L + S + T++G G++Q + LAR L + + L LDE T+A+D+
Sbjct: 120 LAATDLSGLAGRDYRTLSG--GEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQ 177
Query: 386 DLIQSTIRSEFAH--CTVLTIAHRLN-TIIDSDRVLVLDKGLVVEFDSP 431
R + A VL + H LN +DR+++L +G V+ SP
Sbjct: 178 HHTLRLAR-QLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225
|
Length = 259 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-09
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI---QSTIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL K+L+ DEAT+A+D ET I I E T++ I H +
Sbjct: 144 GQKQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELG-LTIVLITHEME 202
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ DRV V++KG VVE
Sbjct: 203 VVKRICDRVAVMEKGEVVE 221
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 57.8 bits (140), Expect = 2e-09
Identities = 54/236 (22%), Positives = 92/236 (38%), Gaps = 47/236 (19%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
EG E+ G++G GAGK++L + ++ P G + IDGVD +R ++ ++
Sbjct: 26 EEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLF-- 81
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYF--FIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
++ + ++ YF +S + +
Sbjct: 82 --------GERGLYARLTARENLKYFARLNGLSRKEIK------------------ARIA 115
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
KRL+ + GE TG +Q + +ARAL+ IL+LDE T+ +D+ T
Sbjct: 116 ELSKRLQ--LLEYLDRRVGEFSTG---MKQKVAIARALVHDPSILVLDEPTSGLDIRT-- 168
Query: 387 LIQSTIRSEFAHC-----TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+ V+ +H + + DRV+VL KG VV S L
Sbjct: 169 --RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 3e-09
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC--TVLTIAHRLNT 410
GQ+Q + +A L IL+LDE TA +D + ++ + T++ + H L+
Sbjct: 138 GQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLK-KLKAEGKTIIIVTHDLDL 196
Query: 411 IID-SDRVLVLDKG 423
+++ +DRV+VL+ G
Sbjct: 197 LLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 56.7 bits (138), Expect = 3e-09
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V IVG G+GKS+L L ++ P G +++DG D+ L L LR ++ ++ Q+P
Sbjct: 30 VLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNP 84
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 57/231 (24%), Positives = 104/231 (45%), Gaps = 37/231 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
++ G++G +GAGKS+L + + P G++I+DG D+ TL L R ++ +I Q
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQH- 90
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
F + S VF V +P+ + N + + +
Sbjct: 91 ---FNLLSSRTVFGNVALPLEL------------------------DNTPKDEIKR-KVT 122
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
+ L V + + ++G GQ+Q + +ARAL K+L+ DEAT+A+D T I
Sbjct: 123 ELLALVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTQSIL 180
Query: 390 STIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
++ + T+L I H ++ + D V V+ G ++E + S + +
Sbjct: 181 ELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSH 231
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 4e-09
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 92 KRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
+ +H LL+S+ R + FFDTTP+GR+L+RFS D++ LDN L +S L F I ++
Sbjct: 1031 RNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSI 1090
|
Length = 1560 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 4e-09
Identities = 96/416 (23%), Positives = 169/416 (40%), Gaps = 70/416 (16%)
Query: 206 VRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLGLH-TLRSRL 262
+ R G E VG+ G GAGKS+L L + DG I G ++ + T R+ +
Sbjct: 22 LEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80
Query: 263 TIIPQVLATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIF--TEDVKPLIITPFCSNLQ 319
II Q L +VP +SV IF E P + +
Sbjct: 81 VIIHQELT---------------LVPELSVA------ENIFLGNEITLPGGRMAYNAMYL 119
Query: 320 RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAA 379
R ++ L R + + G+ GQ+QL+ +A+AL ++ ++LILDE +++
Sbjct: 120 R-----AKNLLRELQLDADNVTRPVGDY---GGGQQQLVEIAKALNKQARLLILDEPSSS 171
Query: 380 IDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ + +++ IR AH + I+H+LN + D + V+ G V S + ++
Sbjct: 172 LTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231
Query: 438 KASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLA--VLSKETLNAGLVGLSVSYAMQV 495
I M + +G++I + L V++ V S+ +
Sbjct: 232 D--IITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEIL 289
Query: 496 GIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRTLGLHTLRSRLTIIPQD---- 548
G+ G GAG++ L ALF +G + I+G VDIR +R+ + ++P+D
Sbjct: 290 GVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMVPEDRKRH 348
Query: 549 ---PVL-------------FSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLP 588
P+L F +R++ + + I A++ + T LP
Sbjct: 349 GIVPILGVGKNITLSVLKSFCFKMRID----AAAELQIIGSAIQRLKVKTASPFLP 400
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 58.5 bits (142), Expect = 5e-09
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407
G++Q + AR LL K K + LDEAT+A+D ET+D + ++ E TV+++ HR
Sbjct: 519 GEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR 573
|
Length = 604 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 6e-09
Identities = 35/106 (33%), Positives = 56/106 (52%), Gaps = 3/106 (2%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGT 555
GI G TG+GKS+L + R + ++G I + + L L + RSRL ++ Q P LFS T
Sbjct: 345 GICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDT 404
Query: 556 LRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ N+ +G +++ + I LA ++ + LP EV E G
Sbjct: 405 VANNI-ALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERG 449
|
Length = 569 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 56.4 bits (137), Expect = 7e-09
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 3/58 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL---RSRLTIIPQDP 549
+G+VG +G+GKS+L A+ +++P G+II DG D+ L R + ++ QDP
Sbjct: 34 LGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDP 91
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 56.5 bits (137), Expect = 7e-09
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRL 408
N G R+ + +ARALL + +L+LDE T +D + I + +R+ +VL H +
Sbjct: 134 NGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRALARDQGLSVLWATHLV 193
Query: 409 NTIIDSDRVLVLDKGLVV 426
+ I DR++VL +G V+
Sbjct: 194 DEIEADDRLVVLHRGRVL 211
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 55.6 bits (135), Expect = 8e-09
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHC-TVLTIAHRLNT 410
GQ+Q I LARA+ I +LD+ +A+D + ++ I + T + + H+L
Sbjct: 131 GQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQL 190
Query: 411 IIDSDRVLVLDKG 423
+ +D+++VLD G
Sbjct: 191 LPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 16/86 (18%)
Query: 197 GEVEFKDYKVRY---------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADG 241
G +EF++ Y R G E V I+GR G+GKS+L L + +P G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++++DG DIR L LR + +PQ
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQ 85
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 1e-08
Identities = 56/229 (24%), Positives = 99/229 (43%), Gaps = 36/229 (15%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
++G +G GK++L L +P G+I++DG D+ T +P L I ++
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV------------TNVPPHLRHINMVF 48
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVS 336
S +F + V +V + + E R L+ L V
Sbjct: 49 QSYALFPHMTVEENVAFGLKMRKVPRAE-------------------IKPRVLEALRLVQ 89
Query: 337 RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIR 393
++G GQ+Q + LARAL+ K KIL+LDE +A+D + D +Q TI+
Sbjct: 90 LEEFADRKPHQLSG--GQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQ 147
Query: 394 SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ V + + SDR+ ++ KG + + +P + + A++F
Sbjct: 148 EQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 43/170 (25%), Positives = 71/170 (41%), Gaps = 35/170 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + I G +G GKS+L + +I P GT++ +G D+ TL R +++
Sbjct: 30 EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVS--------- 80
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ-LKR 331
+ Q +F + V+ +I P+ +R A + L R
Sbjct: 81 ---------------------YCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLAR 119
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
I + ++G G++Q I L R L KIL+LDE T+A+D
Sbjct: 120 FALPDS--ILTKNITELSG--GEKQRIALIRNLQFMPKILLLDEITSALD 165
|
Length = 223 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 1e-08
Identities = 62/213 (29%), Positives = 102/213 (47%), Gaps = 23/213 (10%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAID-LETDDLIQSTIRSEFAH-CTVLTIAHRL 408
V RQ++ + R L+R ++ILILDE TA++ ET+ L IR A ++ I+H+L
Sbjct: 142 EVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSR-IRELLAQGVGIVFISHKL 200
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM---AKDAGLA-----WLAVRLE 459
I +DR+ V+ G + + L + I ++ A++ L+ W LE
Sbjct: 201 PEIRQLADRISVMRDGTIALSGKTADL--STDDIIQAITPAAREKSLSASQKLW----LE 254
Query: 460 TVGNLITFSAALLAVLSKETLNA-GLVGLSVS-YAMQ-VGIVGRTGAGKSSLTLALFRII 516
GN AA VL+ E L G +S+ A + +G+ G GAG++ L L+ +
Sbjct: 255 LPGNRRQ-QAAGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLR 313
Query: 517 EPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQD 548
G I+++G +I L L L +P+D
Sbjct: 314 PARGGRIMLNGKEINALSTAQRLARGLVYLPED 346
|
Length = 510 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 57.1 bits (138), Expect = 2e-08
Identities = 60/239 (25%), Positives = 105/239 (43%), Gaps = 38/239 (15%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A R + +E V S +H ++G G++Q + LAR L ++ + + DE T +D +
Sbjct: 145 AVGRAVDLIEMVQLSHRITHIARDLSG--GEKQRVVLARQLAKEPFLFLADEPTGTLDPQ 202
Query: 384 TDDLIQSTIRS---EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
T L+ + + VLT +H I D SD+ + L+ G + E +P ++
Sbjct: 203 TAKLVHNALEEAVKASGISMVLT-SHWPEVIEDLSDKAIWLENGEIKEEGTPDEVV---- 257
Query: 440 SIFYSMAKDAGLAWLAVRLET---VGNLITFSAALLAVLSKE--TLNAGL------VGLS 488
++F + V E VG I + +SK +++ G+ V L
Sbjct: 258 AVFMEGVSE-------VEKECEVEVGEPII----KVRNVSKRYISVDRGVVKAVDNVSLE 306
Query: 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHTLRSRLT 543
V GIVG +GAGK++L+ + ++EP G + + + VD+ G R R
Sbjct: 307 VKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGP-DGRGRAK 364
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.5 bits (134), Expect = 2e-08
Identities = 51/224 (22%), Positives = 99/224 (44%), Gaps = 36/224 (16%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
IVG G+GKS++ + I + G I + I LR + I+ Q
Sbjct: 40 IVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQ--------- 90
Query: 277 YSTPVFIFV--IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES 334
P FV IV V F ++ + +++ + S LK+++
Sbjct: 91 --NPDNQFVGSIVKYDVA-FGLENHAVPYDEMHRRV---------------SEALKQVDM 132
Query: 335 VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR- 393
+ R+ + ++G GQ+Q + +A L ++ILDEAT+ +D + + +R
Sbjct: 133 LERA---DYEPNALSG--GQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRK 187
Query: 394 -SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436
+ T+++I H L+ +++D V+V++KG V + +P+ +
Sbjct: 188 VKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.7 bits (137), Expect = 2e-08
Identities = 85/342 (24%), Positives = 141/342 (41%), Gaps = 70/342 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL--TIIPQVLA 270
E+ ++G GAGKS+L L I EP GTI I+ ++ L H L ++L II Q L+
Sbjct: 32 EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLD-HKLAAQLGIGIIYQELS 90
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
VI ++VL + + T+ V + I + R + L
Sbjct: 91 --------------VIDELTVLEN-LYIGRHLTKKVCGVNIIDWREMRVR----AAMMLL 131
Query: 331 RLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAI-DLETDDL 387
R+ + + N + +Q++ +A+ L+ K++I+DE T+++ + E D L
Sbjct: 132 RV-GLKVDL------DEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYL 184
Query: 388 --IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
I + +R E ++ I+H+L I DR V MK+ +S+
Sbjct: 185 FLIMNQLRKEGT--AIVYISHKLAEIRRICDRYTV---------------MKDGSSVCSG 227
Query: 445 MAKDA---GLAWLAV----------RLETVGNLIT---FSAALLAVLSKETLNAGLVGLS 488
M D + L V E V NL F V S++ + S
Sbjct: 228 MVSDVSNDDIVRLMVGRELQNRFNAMKENVSNLAHETVFEVR--NVTSRDRKKVRDISFS 285
Query: 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
V +G G G+G++ L LF + + A G I ++G DI
Sbjct: 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDI 327
|
Length = 510 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 2e-08
Identities = 65/229 (28%), Positives = 94/229 (41%), Gaps = 45/229 (19%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
L G++G G+GKS+L L + P GT+ + GVD+ L R+ ++ Q T
Sbjct: 29 LTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTA- 87
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL----QRFYVATSRQL 329
VP++V DV L P S R L
Sbjct: 88 -------------VPLTVR------------DVVALGRIPHRSLWAGDSPHDAAVVDRAL 122
Query: 330 KRLESVSRSPIYSHFGE----TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
R E SH + T++G G+RQ + +ARAL ++ K+L+LDE T +D+
Sbjct: 123 ARTEL-------SHLADRDMSTLSG--GERQRVHVARALAQEPKLLLLDEPTNHLDVRAQ 173
Query: 386 DLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
+ +R A TV+ H LN D V+VLD G VV P
Sbjct: 174 LETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPR 222
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 2e-08
Identities = 28/79 (35%), Positives = 44/79 (55%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST---IRSEFAHCTVLTIAHRLN 409
GQRQ I +ARAL K+++ DE +A+D+ I + ++ E T L I+H L+
Sbjct: 113 GQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEEL-GLTYLFISHDLS 171
Query: 410 TIID-SDRVLVLDKGLVVE 427
+ SDR+ V+ G +VE
Sbjct: 172 VVRYISDRIAVMYLGKIVE 190
|
Length = 268 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 3e-08
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V IVG G+GKS+L L ++ P G +++DG D+ L L LR ++ ++ Q
Sbjct: 28 EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQ 82
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 3e-08
Identities = 30/96 (31%), Positives = 55/96 (57%), Gaps = 5/96 (5%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRL 408
+ GQRQ + LARAL+RK K+ +LDE + +D + L++S I+ E T + + H
Sbjct: 135 SGGQRQRVALARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQ 194
Query: 409 --NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DR++V++ G + + +P L + A++F
Sbjct: 195 VEAMTL-ADRIVVMNDGRIQQVGTPLELYERPANLF 229
|
Length = 338 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 3e-08
Identities = 22/80 (27%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + LARAL R+ +L+LDE +A+D + + ++ ++ T + + H
Sbjct: 134 GQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEE 193
Query: 411 IID-SDRVLVLDKGLVVEFD 429
+ +DR+ V+++G +V+
Sbjct: 194 ALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 3e-08
Identities = 33/101 (32%), Positives = 54/101 (53%), Gaps = 7/101 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L + KI+ILDE+T+ +D + I IR + + TV++I H ++
Sbjct: 147 GQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDE 206
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+D+VLVLD G ++ SP + M K+ GL
Sbjct: 207 ANMADQVLVLDDGKLLAQGSPVEIFSKV-----EMLKEIGL 242
|
Length = 282 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 54.5 bits (131), Expect = 3e-08
Identities = 35/118 (29%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A R ++ L+ V + H ++G GQ+Q + +ARAL + K+++ DE T+A+D E
Sbjct: 123 AEKRAMELLDMVGLADKADHMPAQLSG--GQQQRVAIARALAMRPKVMLFDEVTSALDPE 180
Query: 384 TDDLIQSTIRSEFAH---CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ + IR A T+L + H + + +DRV DKG +VE P + +
Sbjct: 181 LVGEVLNVIR-RLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 4e-08
Identities = 30/71 (42%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 256
G+ KD V++ EG + IVG +GAGKS+L + R+I+P +G+I+IDGVDI+T+ +
Sbjct: 15 GKEILKDISVKF-EGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVI 73
Query: 257 TLRSRLTIIPQ 267
LR ++ ++ Q
Sbjct: 74 DLRRKIGMVFQ 84
|
Length = 241 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.7 bits (131), Expect = 4e-08
Identities = 55/227 (24%), Positives = 96/227 (42%), Gaps = 36/227 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V I+G+ G+GKS+ + + E +G + IDG + + LR ++ ++
Sbjct: 34 EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMV------- 86
Query: 273 FVICYSTP--VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+ P F+ V V + + E +K + N+ F +R+
Sbjct: 87 ----FQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDF---KTREPA 139
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RL GQ+Q + +A + + +I+ILDE+T+ +D I
Sbjct: 140 RLSG------------------GQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMR 181
Query: 391 TIRS--EFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435
I E TVL+I H L+ SDR+LV+ G +++ +PS L
Sbjct: 182 VIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 4e-08
Identities = 40/155 (25%), Positives = 65/155 (41%), Gaps = 38/155 (24%)
Query: 226 SSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVICYSTPVFIF 284
S+L + +++P GTI++DG D L LR R+ ++ Q +F
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQ----------DPQLFPE 50
Query: 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSH- 343
+ V ++ + R A +R + LE V
Sbjct: 51 LTVRENLFFG------------------------LRDKEADARAEEALERVGLPDFLDRE 86
Query: 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATA 378
T++G GQ+Q + +ARALL+K K+L+LDE TA
Sbjct: 87 PVGTLSG--GQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 5e-08
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E + I+G +G+GKS+L + ++ P G + +DG DI + L + +PQ
Sbjct: 29 ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQ 83
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 5e-08
Identities = 37/118 (31%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP----- 549
GI+G G+GKS+L L +++P G +++DG DI +L L +L +PQ P
Sbjct: 31 TGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFG 90
Query: 550 ------VLFSGTLRLNLDPVGESSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
VL L L D E + +ALE + +L R E+S GGE
Sbjct: 91 LTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE----LLGLEHLADRPVDELS-GGE 143
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 52.8 bits (128), Expect = 5e-08
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547
VGI+G GAGKS+L L +++P+ G I++DG D+ +L L ++ +PQ
Sbjct: 28 VGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQ 80
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 5e-08
Identities = 28/93 (30%), Positives = 43/93 (46%), Gaps = 8/93 (8%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVLF 552
GI+G +GAGKS+L + + P G++ +DG D+ L L LR ++ +I Q L
Sbjct: 36 GIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLL 95
Query: 553 S-----GTLRLNLDPVGESSDEAIWKALELAHL 580
S + L+ G E + EL L
Sbjct: 96 SSRTVFENVAFPLELAGVPKAEIKQRVAELLEL 128
|
Length = 339 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 6e-08
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 2/82 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +A L + I+ILDEAT+ +D + T+R E TVL+I H L+
Sbjct: 144 GQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDE 203
Query: 411 IIDSDRVLVLDKGLVVEFDSPS 432
+DRV+V++KG ++E +P
Sbjct: 204 AAQADRVIVMNKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.2 bits (133), Expect = 6e-08
Identities = 64/221 (28%), Positives = 99/221 (44%), Gaps = 33/221 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + +VG +G+GKS+ AL R++E G II +G I TL +L + + + I
Sbjct: 351 ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS----PGKLQALRRDIQFI 406
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKR 331
F Y+ SL + V I+ P L A +R
Sbjct: 407 FQDPYA--------------------SLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWL 446
Query: 332 LESVSRSPIYS-HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
LE V P ++ + +G GQRQ IC+ARAL K++I DEA +A+D+ I +
Sbjct: 447 LERVGLLPEHAWRYPHEFSG--GQRQRICIARALALNPKVIIADEAVSALDVSIRGQIIN 504
Query: 391 ---TIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
++ +F L I+H + + S RV V+ G +VE
Sbjct: 505 LLLDLQRDFG-IAYLFISHDMAVVERISHRVAVMYLGQIVE 544
|
Length = 623 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 8e-08
Identities = 29/114 (25%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 167 AVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYR------EGLEL------ 214
A ERI E + + K +E +D Y +G+ L
Sbjct: 303 AAERIVEVLDAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGE 362
Query: 215 -VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
V I+G +G+GKS+L L +++P G + +DGV + +L +R R+++ Q
Sbjct: 363 RVAILGPSGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQ 416
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 52.9 bits (128), Expect = 1e-07
Identities = 21/62 (33%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL---RSRLTII 265
++G E +G+VG +G+GKS+L A+ +++P G+II DG D+ L R + ++
Sbjct: 29 KKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMV 87
Query: 266 PQ 267
Q
Sbjct: 88 FQ 89
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V LS++ V ++G +GAGKS+L L ++EP G+++IDG DI L L LR +
Sbjct: 20 VSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQ 79
Query: 542 LTIIPQDPVL 551
+ +I Q L
Sbjct: 80 IGMIFQQFNL 89
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 53.8 bits (130), Expect = 1e-07
Identities = 59/238 (24%), Positives = 94/238 (39%), Gaps = 52/238 (21%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR---TLGLHTLRSRLTIIPQVLATIF 273
+VG +G GKS+L L I P G + G D+ LR ++ I+ Q
Sbjct: 46 VVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQN----- 100
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLE 333
P L +V I E PL+I S +R + L +
Sbjct: 101 --------------PYGSLNPRKKVGQILEE---PLLINTSLSAAER----REKALAMMA 139
Query: 334 SVS-RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V R Y + +G GQRQ I +ARAL+ +++ DE +A+D+ +Q+ +
Sbjct: 140 KVGLRPEHYDRYPHMFSG--GQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQV 193
Query: 393 RSEFA------HCTVLTIAHRLNTI--IDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ + + I+H L+ + I +D V+V+ G VE K IF
Sbjct: 194 LNLMMDLQQELGLSYVFISHDLSVVEHI-ADEVMVMYLGRCVE-------KGTKEQIF 243
|
Length = 327 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 1e-07
Identities = 59/240 (24%), Positives = 102/240 (42%), Gaps = 47/240 (19%)
Query: 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266
REG + + I+G G+GKS+L L +IEP G I+I+ L R I
Sbjct: 35 TLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILIND---HPLHFGDYSFRSKRIR 90
Query: 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
+ P + L +++ I PL + QR
Sbjct: 91 MIFQD----------------PNTSLNPRLRIGQILDF---PLRLNTDLEPEQR----RK 127
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
+ + L V P ++++ + GQ+Q + LARAL+ + KI+I DEA A++D+
Sbjct: 128 QIFETLRMVGLLPDHANYYPHMLA-PGQKQRVALARALILRPKIIIADEALASLDM---- 182
Query: 387 LIQSTIRSEFAHCTV----------LTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435
++RS+ + + + + + I SD+VLV+ +G VVE S + ++
Sbjct: 183 ----SMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238
|
Length = 267 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 53.9 bits (130), Expect = 1e-07
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 3/82 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + K+L+LDE A+D + ++ +R + T + + H
Sbjct: 141 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEE 200
Query: 411 IID-SDRVLVLDKGLVVEFDSP 431
++ +DRV+VL++G + + P
Sbjct: 201 ALELADRVVVLNQGRIEQVGPP 222
|
Length = 345 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.6 bits (127), Expect = 1e-07
Identities = 33/112 (29%), Positives = 56/112 (50%), Gaps = 6/112 (5%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V+ VG++G GAGK++ + ++ P G I++D DI L +H R+RL I
Sbjct: 23 VSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRARLGI 81
Query: 545 --IPQDPVLFSG-TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQH 593
+PQ+ +F T+ N+ V E ++ + KA L+ + + H
Sbjct: 82 GYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF--HITH 131
|
Length = 243 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.3 bits (125), Expect = 1e-07
Identities = 56/226 (24%), Positives = 95/226 (42%), Gaps = 51/226 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+L IVG+ G GKSSL LA+ ++ +G + + RSR
Sbjct: 28 QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSR---------NR 78
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFYVATSRQLK 330
+ + Y+ Q + V+ I +PF N QR+ T
Sbjct: 79 YSVAYAA-----------------QKPWLLNATVEENITFGSPF--NKQRYKAVT----- 114
Query: 331 RLESVSRSP---IYSHFGETVTG------NVGQRQLICLARALLRKTKILILDEATAAID 381
++ S P + +T G + GQRQ IC+ARAL + T I+ LD+ +A+D
Sbjct: 115 --DACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD 172
Query: 382 LE-TDDLIQSTIRSEFAH---CTVLTIAHRLNTIIDSDRVLVLDKG 423
+ +D L+Q I +F T++ + H+L + +D ++ + G
Sbjct: 173 IHLSDHLMQEGIL-KFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 25/71 (35%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT--LRSRL 542
V L++ V ++G +G+GKS+L + + EP G+I+IDG D+ L LR R+
Sbjct: 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78
Query: 543 TIIPQDPVLFS 553
++ QD LF
Sbjct: 79 GMVFQDFALFP 89
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 2e-07
Identities = 28/84 (33%), Positives = 45/84 (53%), Gaps = 3/84 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQ+Q +CLARAL + ++L+LDE T+A+D + I+ I E T++ + H +
Sbjct: 145 GQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIA-ELKKEYTIVIVTHNMQQA 203
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVL 434
+DR L G +VEF +
Sbjct: 204 ARVADRTAFLLNGRLVEFGPTEQI 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (126), Expect = 2e-07
Identities = 34/87 (39%), Positives = 47/87 (54%), Gaps = 8/87 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+QL+CLAR L ++L+LDE T+A+D T + I+ IRS TV+ + H L
Sbjct: 167 GQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAA 226
Query: 413 D-SDRVLVLDKGLVVE-------FDSP 431
SDR + G +VE F SP
Sbjct: 227 RISDRAALFFDGRLVEEGPTEQLFSSP 253
|
Length = 276 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 52.1 bits (126), Expect = 2e-07
Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 7/89 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G ++ + LARAL ++L+ DE TA +D DDLI+S + T + + H L
Sbjct: 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKEL--GLTSIMVTHDL 197
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMK 436
+T +DR+ VL G +V +P L
Sbjct: 198 DTAFAIADRIAVLYDGKIVAEGTPEELRA 226
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 51.5 bits (124), Expect = 2e-07
Identities = 50/225 (22%), Positives = 92/225 (40%), Gaps = 55/225 (24%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---------LRSRLT 263
E+ G++G GAGK++ + II P G ++ DG + + L ++
Sbjct: 27 EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARNRIGYLPEERGLYPKMK 86
Query: 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+I Q L + Q+ + E+ + I L+R +
Sbjct: 87 VIDQ------------------------LVYLAQLKGLKKEEARRRID----EWLERLEL 118
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
+ KR+E +S+ G +Q + A++ ++LILDE + +D
Sbjct: 119 -SEYANKRVEELSK---------------GNQQKVQFIAAVIHDPELLILDEPFSGLDPV 162
Query: 384 TDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
+L++ IR A TV+ H++ + + DRVL+L+KG V
Sbjct: 163 NVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAV 207
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-07
Identities = 27/89 (30%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ K +L++DE +A+D ++I++ I+ + T++ + H +
Sbjct: 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAK 212
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
SDRV G +VE+++ + KN S
Sbjct: 213 KVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241
|
Length = 251 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 51.7 bits (125), Expect = 2e-07
Identities = 30/91 (32%), Positives = 52/91 (57%), Gaps = 6/91 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ++ + +ARAL K+L+LDE A ++ ET++L + +R TVL + H ++
Sbjct: 147 GQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRER--GITVLLVEHDMD 204
Query: 410 TIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
++ +DRV VLD+G V+ +P + N
Sbjct: 205 VVMSLADRVTVLDQGRVIAEGTPDEVRNNPR 235
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 3e-07
Identities = 63/231 (27%), Positives = 104/231 (45%), Gaps = 49/231 (21%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQ 267
REG L I+G G+GKS+L L +IEP G ++ID + G ++ RS R+ +I Q
Sbjct: 37 REGQTL-AIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRIRMIFQ 94
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+T + P + + L D++P ++ + T R
Sbjct: 95 DPST-------------SLNPRQRISQILDFPLRLNTDLEP-------EQREKQIIETLR 134
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
Q+ L + Y H GQ+Q + LARAL+ + K++I DEA A++D+
Sbjct: 135 QVGLLPD--HASYYPHMLAP-----GQKQRLGLARALILRPKVIIADEALASLDM----- 182
Query: 388 IQSTIRSEFAHCTV-LTIAHRLNTII----------DSDRVLVLDKGLVVE 427
++RS+ + + L ++ I SD+VLV+ +G VVE
Sbjct: 183 ---SMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVE 230
|
Length = 267 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 4e-07
Identities = 32/117 (27%), Positives = 58/117 (49%), Gaps = 15/117 (12%)
Query: 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPV-- 550
+V ++G G+GKS+L L +++P G +++DG+D + L LR ++ ++ Q+P
Sbjct: 32 RVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ 91
Query: 551 LFSGTLRLNLD------PVGESS-DEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LF T+ + + +E + +ALEL L L R +S GG+
Sbjct: 92 LFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGL----EELLDRPPFNLS-GGQ 143
|
Length = 235 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 4e-07
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 4/76 (5%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+S +++ G I G +G GKS+L + +I P GT++ +G D+ TL R +++
Sbjct: 22 ISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSY 81
Query: 545 IPQDPVLFSGTLRLNL 560
Q P LF T+ NL
Sbjct: 82 CAQTPALFGDTVEDNL 97
|
Length = 223 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 4e-07
Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 15/103 (14%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLH--TLRSRLTII 545
++G +G GKS+L L R+ + P +G +++DG DI L + LR R+ ++
Sbjct: 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMV 86
Query: 546 PQDPVLFSGTLRLNLD----PVGESS----DEAIWKALELAHL 580
Q P F G++ N+ G DE + +AL A L
Sbjct: 87 FQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAAL 129
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 4e-07
Identities = 49/220 (22%), Positives = 90/220 (40%), Gaps = 38/220 (17%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ GI G +GAGKS+L + + +P GTI+++G L R ++ + PQ
Sbjct: 24 EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTV-----LFDSRKKINLPPQQRK-- 76
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNL-QRFYVATSRQL 329
+ F Q +L +V+ + N R V L
Sbjct: 77 ------------------IGLVFQQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDL 118
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
L+ + G G++Q + LARAL + ++L+LDE +A+D +
Sbjct: 119 LGLDHLLNRYPAQLSG-------GEKQRVALARALAAQPELLLLDEPFSALDRALRLQLL 171
Query: 390 STIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426
++ + V+ + H L+ +DR++V++ G +
Sbjct: 172 PELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQ 211
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 5e-07
Identities = 24/63 (38%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTIIP 546
+GIVG +G+GKS+L LAL ++ G +I+DG D+ L +R R+ +I
Sbjct: 38 LGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIF 97
Query: 547 QDP 549
QDP
Sbjct: 98 QDP 100
|
Length = 539 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 5e-07
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + ++L+LDE A+D + ++S +R + H T + + H
Sbjct: 134 GQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEE 193
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ +DR++V+ G + + SP + + A+ F
Sbjct: 194 AMEVADRIVVMSNGKIEQIGSPDEVYDHPANPF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 5e-07
Identities = 23/117 (19%), Positives = 43/117 (36%), Gaps = 6/117 (5%)
Query: 21 ILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYG 80
IL + +GR + S+L + + + + +
Sbjct: 9 ILAGATALVFPLLLGRFLDSLIDGNGDERSSL------ISLAILLIAVGVLQGLLLQGSF 62
Query: 81 FVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSV 137
++ KRL LL+ +L FFDT VG + SR ++DV+ + + L +
Sbjct: 63 YLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKL 119
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 50.5 bits (122), Expect = 5e-07
Identities = 25/69 (36%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQDPVLF 552
V ++GR GAGK++L + ++ P G+I DG DI L H R+R I +P+ +F
Sbjct: 29 VALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVPEGRRIF 87
Query: 553 SG-TLRLNL 560
T+ NL
Sbjct: 88 PELTVEENL 96
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 5e-07
Identities = 30/83 (36%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQRQ + LAR L+R+ IL+LDE +A+D E L+ S + E T+L + H
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALV-SQLCDE-RKMTLLMVTHHP 190
Query: 409 NTIIDS-DRVLVLDKGLVVEFDS 430
DRV+ LD G + S
Sbjct: 191 EDAARIADRVVFLDNGRIAAQGS 213
|
Length = 231 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (123), Expect = 6e-07
Identities = 23/91 (25%), Positives = 49/91 (53%), Gaps = 2/91 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +A L +I+I DE+T+ +D + I+ + + T+++I H ++
Sbjct: 146 GQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDE 205
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASI 441
I +D+V+V +G ++ P ++ NK +
Sbjct: 206 AILADKVIVFSEGKLIAQGKPKEILNNKEIL 236
|
Length = 271 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 6e-07
Identities = 26/77 (33%), Positives = 43/77 (55%), Gaps = 4/77 (5%)
Query: 488 SVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT 543
++S++++ G I G +G GKS+L + +I P GT++ +G DI TL R +++
Sbjct: 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84
Query: 544 IIPQDPVLFSGTLRLNL 560
Q P LF T+ NL
Sbjct: 85 YCAQTPTLFGDTVYDNL 101
|
Length = 225 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 51.6 bits (124), Expect = 7e-07
Identities = 43/143 (30%), Positives = 63/143 (44%), Gaps = 22/143 (15%)
Query: 139 QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWP-EKG 197
LS P LN+L ++ + +E++ + EAE + WP G
Sbjct: 210 FQLSIP------LNFLGFSYREIRQALTDMEKMFDL--LDVEAEVSDAPDAPPLWPVRLG 261
Query: 198 EVEFKDYKVRY---REGL----------ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
V F + Y R L + V IVG +GAGKS++ LFR + G+I
Sbjct: 262 AVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSIT 321
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQ 267
IDG DIR + +LR + I+PQ
Sbjct: 322 IDGQDIRDVTQQSLRRAIGIVPQ 344
|
Length = 497 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 51.0 bits (123), Expect = 8e-07
Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 32/108 (29%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTLG---LHTLR-SRLTII 545
+GIVG +G+GKS L A+ ++ G I+ DG D+ +L L +R + +I
Sbjct: 34 LGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMI 93
Query: 546 PQDPVLFSGTLRLNLDPV----------------GESSDEAIWKALEL 577
QDP + S L+PV G S EA +A+EL
Sbjct: 94 FQDP-MTS------LNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIEL 134
|
Length = 316 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 8e-07
Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 63/220 (28%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
I G +G GKS+L + +I P GT++ +G DI TL R +++ C
Sbjct: 38 ITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS-----------YC 86
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------------FCSNLQRFYVA 324
TP +F + V +I P F +L+RF +
Sbjct: 87 AQTPT-------------------LFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALP 127
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID--- 381
+ K + +S G++Q I L R L K+L+LDE T+A+D
Sbjct: 128 DTILTKNIAELSG---------------GEKQRISLIRNLQFMPKVLLLDEITSALDESN 172
Query: 382 -LETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420
+++I +R + + VL + H + I +D+V+ L
Sbjct: 173 KHNVNEIIHRYVREQ--NIAVLWVTHDKDEINHADKVITL 210
|
Length = 225 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 9e-07
Identities = 44/231 (19%), Positives = 82/231 (35%), Gaps = 92/231 (39%)
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+ ++I V S P + +VP LY+ + FY + +R
Sbjct: 1086 ICSSILVTSASQPFVLVALVPCGYLYYRLMQ----------------------FYNSANR 1123
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
+++R++SV++SP+++ E + G + +A L ++ EA L D+
Sbjct: 1124 EIRRIKSVAKSPVFTLLEEALQ---GSATITAYGKAHL------VMQEA-----LRRLDV 1169
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+ S ++N A+
Sbjct: 1170 VYS-----------------------------------------CSYLENVAN------- 1181
Query: 448 DAGLAWLAVRLETVGNLITFSAALLAVLSK----ETLNAGLVGLSVSYAMQ 494
WL VR+E + N++ AL+ V+ + GLV LS++ AMQ
Sbjct: 1182 ----RWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQ 1228
|
Length = 1560 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 9e-07
Identities = 59/237 (24%), Positives = 105/237 (44%), Gaps = 49/237 (20%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR----TLGLHTLRSRLTIIPQVLA 270
V +VG TG+GKS+L +++P+ GTI I G I L LR +
Sbjct: 36 VALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKK--------- 86
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITP--FCSNLQRFYVATSR 327
VS+++ F + L F V K + P F + +
Sbjct: 87 ------------------VSLVFQFPEAQL-FENTVLKDVEFGPKNFGFSEDEAKEKALK 127
Query: 328 QLKRL----ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
LK++ + +S+SP ++G GQ + + +A + + +IL LDE A +D E
Sbjct: 128 WLKKVGLSEDLISKSPF------ELSG--GQMRRVAIAGVMAYEPEILCLDEPAAGLDPE 179
Query: 384 T-DDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNK 438
+++Q + A TV+ + H ++ + + +D VLVL+ G +++ SP + +K
Sbjct: 180 GRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 1e-06
Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVL 551
V I+G +GAGKS+L +L +++P G I+ +GV I L L LR + +I Q L
Sbjct: 33 VAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNL 92
|
Length = 258 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 1e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 3/58 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
E+ GI+G +GAGKS+L + + P G++ +DG D+ L L LR ++ +I Q
Sbjct: 33 EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQ 90
|
Length = 339 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 1e-06
Identities = 29/85 (34%), Positives = 41/85 (48%), Gaps = 3/85 (3%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFS 65
R K L +LR IL MSFFDT VG + SR + DV + L L + L +
Sbjct: 69 GQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGLGDKLGLFFQSLAT 128
Query: 66 VLYLMPVTITVFFYGFVISLGTLFA 90
V+ I +F+YG+ ++L L
Sbjct: 129 VVGGF---IVMFYYGWKLTLVLLAI 150
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 49.4 bits (119), Expect = 1e-06
Identities = 24/61 (39%), Positives = 36/61 (59%), Gaps = 4/61 (6%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IP 266
EG E+V ++GR GAGK++L + ++ P G+I DG DI L H R+R I +P
Sbjct: 24 PEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHE-RARAGIGYVP 81
Query: 267 Q 267
+
Sbjct: 82 E 82
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 52/218 (23%), Positives = 91/218 (41%), Gaps = 40/218 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+V I+G +GAGKS+L + IEPA G+I ++ GL +
Sbjct: 25 EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQR------------ 70
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
PVS+L F + +L V+ I L+ + Q +++
Sbjct: 71 ---------------PVSML--FQENNLFAHLTVRQNIGLGLHPGLK----LNAEQQEKV 109
Query: 333 ESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID--LETDDLI 388
++ + + + + + GQRQ + LAR L+R IL+LDE +A+D L + L
Sbjct: 110 VDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLA 169
Query: 389 QSTIRSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLV 425
T+L + H L+ ++ V+ +G +
Sbjct: 170 LVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-06
Identities = 41/205 (20%), Positives = 78/205 (38%), Gaps = 52/205 (25%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
+V D + +G ++ I+G +G+GKS+L + + + G + ++G + L
Sbjct: 9 GDKVILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPL-- 65
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-----PLI 310
+ + L Y F +LI E V+ L
Sbjct: 66 -NSKKASKFRREKLG----------------------YLFQNFALIENETVEENLDLGLK 102
Query: 311 ITPFCSNLQRFYVATSRQLKR--LESVSRS-----PIYSHFGETVTGNVGQRQLICLARA 363
++ R+ K+ LE V + IY G G++Q + LARA
Sbjct: 103 -------YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSG-------GEQQRVALARA 148
Query: 364 LLRKTKILILDEATAAIDLETDDLI 388
+L+ +++ DE T ++D + D +
Sbjct: 149 ILKPPPLILADEPTGSLDPKNRDEV 173
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 50.5 bits (121), Expect = 1e-06
Identities = 50/238 (21%), Positives = 95/238 (39%), Gaps = 42/238 (17%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
G + I GR+G+GK++L + + P +G I+++G L R + + P+
Sbjct: 21 PGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRT-----LFDSRKGIFLPPEKR 75
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ---RFYVATS 326
+ Y F + L V+ NL+ + +
Sbjct: 76 R--------------------IGYVFQEARLFPHLSVR--------GNLRYGMKRARPSE 107
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLET 384
R++ E V H + G + G++Q + + RALL ++L++DE AA+D
Sbjct: 108 RRI-SFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPR 166
Query: 385 DDLIQSTIRSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
I + A +L ++H L ++ +DRV+VL+ G V + + +
Sbjct: 167 KYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 1e-06
Identities = 63/250 (25%), Positives = 112/250 (44%), Gaps = 42/250 (16%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
KG +D + G E+VG++G GAGK++ + I+ G IIID DI L L
Sbjct: 14 KGRRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL 72
Query: 256 HTLRSRLTI--IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
H R+R I +PQ A+IF +SV Y + L +D+
Sbjct: 73 HA-RARRGIGYLPQE-ASIF-------------RRLSV-YDNLMAVLQIRDDL------- 109
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
S QR R + +E + G++++G G+R+ + +ARAL K ++L
Sbjct: 110 --SAEQR----EDRANELMEEFHIEHLRDSMGQSLSG--GERRRVEIARALAANPKFILL 161
Query: 374 DEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428
DE A +D ++ +I+ S VL H + + +R ++ +G ++
Sbjct: 162 DEPFAGVDPISVIDIKRIIEHLRDSGLG---VLITDHNVRETLAVCERAYIVSQGHLIAH 218
Query: 429 DSPSVLMKNK 438
+P+ +++++
Sbjct: 219 GTPTEILQDE 228
|
Length = 241 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-06
Identities = 26/110 (23%), Positives = 46/110 (41%), Gaps = 14/110 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLF 552
+ + G+ GAGK++L L +I+ + G+I+++G I R + + QD LF
Sbjct: 29 IALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI---KAKERRKSIGYVMQDVDYQLF 85
Query: 553 SGT----LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
+ + L L L + + E L+ L P +S G
Sbjct: 86 TDSVREELLLGLKELDAGN-EQAETVLKDLDLYALKERHP----LSLSGG 130
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 29/94 (30%), Positives = 54/94 (57%), Gaps = 5/94 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFAHCTVLTIAHRLN 409
GQ+Q + +ARAL IL++DE A+D T +Q ++ E T++ + H ++
Sbjct: 139 GQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKEL-GKTIVFVTHDID 197
Query: 410 TIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ +DR+ V+D G +V++D+P ++ N A+ F
Sbjct: 198 EALKLADRIAVMDAGEIVQYDTPDEILANPANDF 231
|
Length = 309 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 49.9 bits (120), Expect = 2e-06
Identities = 23/63 (36%), Positives = 36/63 (57%), Gaps = 8/63 (12%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTI 264
E++GIVG +G+GKS+L LAL ++ G +I+DG D+ L +R R+ +
Sbjct: 36 EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAM 95
Query: 265 IPQ 267
I Q
Sbjct: 96 IFQ 98
|
Length = 539 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 50.6 bits (122), Expect = 2e-06
Identities = 27/117 (23%), Positives = 47/117 (40%), Gaps = 17/117 (14%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------LEL- 214
I + RI E E E + ++ + + Y + L++
Sbjct: 308 IASARRINEITEQKPEVTFPTTSTAA---ADQVSLTLNNVSFTYPDQPQPVLKGLSLQIK 364
Query: 215 ----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
V ++GRTG GKS+L L R +P G I+++G I LR ++++ Q
Sbjct: 365 AGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQ 421
|
Length = 574 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 21/68 (30%), Positives = 39/68 (57%), Gaps = 2/68 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++L + +++P G I + G DI+ ++ R+ +P++P L+
Sbjct: 29 YGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPSLYEN 87
Query: 555 -TLRLNLD 561
T+R NL
Sbjct: 88 LTVRENLK 95
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 2e-06
Identities = 32/109 (29%), Positives = 50/109 (45%), Gaps = 15/109 (13%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V IVG G+GKSSL AL +E G++ ++ + + Q+P + +G
Sbjct: 34 VAIVGPVGSGKSSLLSALLGELEKLSGSV-------------SVPGSIAYVSQEPWIQNG 80
Query: 555 TLRLNLDPVGESSDEA-IWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ G+ DE K ++ L + LP E+ E G NL
Sbjct: 81 TIRENI-LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.2 bits (120), Expect = 2e-06
Identities = 65/229 (28%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQVLA 270
E + IVG +G+GKS LAL R++E A G + D + +R RSR I Q A
Sbjct: 43 ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRR------RSRQVIELSEQSAA 96
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR--- 327
+ + + IF P++ L V E + R + SR
Sbjct: 97 QMRHVRGADMAMIFQ-EPMTSLNPVFTVGEQIAESI-------------RLHQGASREEA 142
Query: 328 --QLKRLESVSRSP----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
+ KR+ R P I S + ++G G RQ + +A AL + +LI DE T A+D
Sbjct: 143 MVEAKRMLDQVRIPEAQTILSRYPHQLSG--GMRQRVMIAMALSCRPAVLIADEPTTALD 200
Query: 382 LETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
+ I I+ + V+ I H + + + +DRVLV+ +G VE
Sbjct: 201 VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVE 249
|
Length = 623 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 2e-06
Identities = 56/228 (24%), Positives = 90/228 (39%), Gaps = 51/228 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVL 269
E+V IVG +G+GKS+L L + P G ++ +G + L LR++
Sbjct: 32 EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNK-------- 83
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT--EDVK-PLIITPFCSNLQRFYVATS 326
F+ Y F + FT E+V PL+I A
Sbjct: 84 -----------KLGFI-------YQFHHLLPDFTALENVAMPLLI----GKKSVKE-AKE 120
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD- 385
R + LE V +H ++G G+RQ + +ARAL+ + +++ DE T +D
Sbjct: 121 RAYEMLEKVGLEHRINHRPSELSG--GERQRVAIARALVNQPSLVLADEPTGNLDNNNAK 178
Query: 386 ---DLIQ---STIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
DL+ + + F L + H L DRVL + G +
Sbjct: 179 IIFDLMLELNRELNTSF-----LVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 50/225 (22%), Positives = 84/225 (37%), Gaps = 37/225 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ G++G GAGK++ L + P GT I+G IRT R L PQ
Sbjct: 29 EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQ----- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
F + + L F+ ++ + ++K + R L L
Sbjct: 83 FDALFDE------LTVREHLRFYARLKGLPKSEIKEEV------------ELLLRVLG-L 123
Query: 333 ESVSRSPI--YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
+ S G +R+L LA AL+ +L+LDE T+ +D + I
Sbjct: 124 TDKANKRARTLS------GGM--KRKL-SLAIALIGGPSVLLLDEPTSGLDPASRRAIWD 174
Query: 391 TIRSEFAHCTVLTIAHRLNTI-IDSDRVLVLDKGLVVEFDSPSVL 434
I +++ H ++ DR+ ++ G + SP L
Sbjct: 175 LILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.3 bits (121), Expect = 2e-06
Identities = 56/213 (26%), Positives = 90/213 (42%), Gaps = 35/213 (16%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQSTIRSEFAHCTV-LTIAHRLN 409
+GQRQ++ +A+AL R +++ DE T+++ E + L IR A V L ++HR+
Sbjct: 143 IGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLF-RVIRELRAEGRVILYVSHRME 201
Query: 410 TIID-SDRVLVLDKG-LVVEFDSPSVL--------M--KNKASIFYSMAKDAGLAWLAVR 457
I D + V G V FD + + M + I+ + G VR
Sbjct: 202 EIFALCDAITVFKDGRYVATFDDMAQVDRDQLVQAMVGREIGDIYGYRPRPLG----EVR 257
Query: 458 LETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517
L G L L + SV VG+ G GAG+S L L+
Sbjct: 258 LRLDG------------LKGPGLREP-ISFSVRAGEIVGLFGLVGAGRSELMKLLYGATR 304
Query: 518 PADGTIIIDG--VDIRTLGLHTLRSRLTIIPQD 548
G + +DG +DIR+ +R+ + + P+D
Sbjct: 305 RTAGQVYLDGKPIDIRSPR-DAIRAGIMLCPED 336
|
Length = 501 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 50.0 bits (119), Expect = 2e-06
Identities = 55/256 (21%), Positives = 100/256 (39%), Gaps = 48/256 (18%)
Query: 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLG 254
D + G EL+ ++G++G GK++L A+ ++ A G I I D+
Sbjct: 17 ANTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAP 75
Query: 255 LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314
H + L ++ Q A +F + V +V + L + K I
Sbjct: 76 PH--KRGLALLFQNYA----------LFPHLKVEDNVAF-----GLRAQKMPKADI---- 114
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
R L+ V +H ++G G +Q I +ARA+ + +L+LD
Sbjct: 115 ----------AERVADALKLVGLGDAAAHLPAQLSG--GMQQRIAIARAIAIEPDVLLLD 162
Query: 375 EATAAIDLETDDLIQSTIRSEFA-------HCTVLTIAH-RLNTIIDSDRVLVLDKGLVV 426
E +A+D I++ +R E A T+L + H + + + +D+ ++ G +
Sbjct: 163 EPLSALDAN----IRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLA 218
Query: 427 EFDSPSVLMKNKASIF 442
P L A F
Sbjct: 219 AHGEPQALYDAPADGF 234
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 2e-06
Identities = 63/237 (26%), Positives = 99/237 (41%), Gaps = 59/237 (24%)
Query: 195 EKGEVEFKDYKVRYREGLEL-----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
E V F +V LEL + ++G GAGKS+L + ++ P +G I
Sbjct: 8 ENVSVSFGQRRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIK----- 62
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
R L R+ +PQ L ++ +P++V F L K
Sbjct: 63 -RNGKL-----RIGYVPQKL------------YLDTTLPLTVNRF-----LRLRPGTKKE 99
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTK 369
I P LKR V + + ++G G+ Q + LARALL + +
Sbjct: 100 DILP--------------ALKR---VQAGHLIDAPMQKLSG--GETQRVLLARALLNRPQ 140
Query: 370 ILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTII-DSDRVLVLD 421
+L+LDE T +D + DLI +R E C VL ++H L+ ++ +D VL L+
Sbjct: 141 LLVLDEPTQGVDVNGQVALYDLIDQ-LRREL-DCAVLMVSHDLHLVMAKTDEVLCLN 195
|
Length = 251 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 2e-06
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 267
E VG++G TG+GKS+L L +++P G IIIDGVDI + + L +R ++ ++ Q
Sbjct: 34 EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQ 90
|
Length = 287 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 14/86 (16%)
Query: 196 KGEVEFKDYKVRY--REGLEL------------VGIVGRTGAGKSSLTLALFRIIEPADG 241
KG++EF++ Y +E L V +VGR+G+GKS++ L R + +G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
I++DG D+R L +LR+++ ++ Q
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQ 424
|
Length = 582 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 3e-06
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LARALL IL+LDE T +D ET D + + + + TV+ I H L
Sbjct: 475 GERQRLALARALLADAPILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 33/112 (29%), Positives = 49/112 (43%), Gaps = 12/112 (10%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V LSV VG+VG GAGK++L A+ + P GT+++ G D+ L R+
Sbjct: 22 VDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81
Query: 545 IPQDPVL---FSGTL---------RLNLDPVGESSDEAIWKALELAHLNTFV 584
+PQD L F R D E+ A+ +A+E + F
Sbjct: 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFA 133
|
Length = 402 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 3e-06
Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 506 SSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPVLF-SGTLRLNLDPV 563
S+L + +++P GTI++DG D L LR R+ ++ QDP LF T+R NL
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 564 G--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
+ +D +ALE L F+ P +S GG+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPV---GTLS-GGQ 95
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 48/172 (27%), Positives = 77/172 (44%), Gaps = 34/172 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQVLA 270
E+VG++G GAGK++ + ++ P G I++D DI L +H R+RL I +PQ A
Sbjct: 31 EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMH-KRARLGIGYLPQE-A 88
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQL 329
+IF ++V + V I +D+K L + F
Sbjct: 89 SIF-------------RKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEF-------- 127
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
+ + S YS G G+R+ + +ARAL K ++LDE A +D
Sbjct: 128 -HITHLRDSKAYSLSG-------GERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 3e-06
Identities = 49/187 (26%), Positives = 85/187 (45%), Gaps = 42/187 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTII--PQVLA 270
E+VG++G GAGK++ + +++P G I++DG DI L +H R+RL I PQ A
Sbjct: 27 EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGIGYLPQE-A 84
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
+IF L E++ L + L+ ++ + +
Sbjct: 85 SIF------------------------RKLTVEENI--LAV------LEIRGLSKKEREE 112
Query: 331 RLESV----SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
+LE + + + +++G G+R+ + +ARAL K L+LDE A +D
Sbjct: 113 KLEELLEEFHITHLRKSKASSLSG--GERRRVEIARALATNPKFLLLDEPFAGVDPIAVQ 170
Query: 387 LIQSTIR 393
IQ I+
Sbjct: 171 DIQKIIK 177
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (117), Expect = 3e-06
Identities = 29/78 (37%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDD-LIQST--IRSEFAHCTVLTIAHRLN 409
GQRQ + L A L KIL+LDE TAA+D +T + +++ T I E T L + H +
Sbjct: 152 GQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEH-KLTTLMVTHNME 210
Query: 410 TIID-SDRVLVLDKGLVV 426
+D +R+++L G +V
Sbjct: 211 DALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 3e-06
Identities = 30/93 (32%), Positives = 53/93 (56%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQRQ + LARAL + K+L+LDE A+D + ++ +R + H T + + H
Sbjct: 140 GQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEE 199
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ +DRV+V++KG + + +P + + AS F
Sbjct: 200 ALEVADRVVVMNKGRIEQVGTPDEVYDHPASPF 232
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 3e-06
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 23/103 (22%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID--------LETDDLIQSTIRSEFAHCT---- 400
GQ+Q + +ARAL+ + K+L+LDE A+D LE L Q + F T
Sbjct: 134 GQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRL-QKELGITFVFVTHDQE 192
Query: 401 -VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
LT+ SDR+ V++KG + + +P + + A+ F
Sbjct: 193 EALTM---------SDRIAVMNKGKIQQIGTPEEIYEEPANRF 226
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 33/105 (31%), Positives = 53/105 (50%), Gaps = 13/105 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++L L +++P G I++ G D+ +R R+ +PQ+P L+
Sbjct: 34 FGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPE 92
Query: 555 -TLRLNLD-------PVGESSDEAIWKALELAHL----NTFVSNL 587
T+R NL+ E ++E I + LEL L N V L
Sbjct: 93 LTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTL 137
|
Length = 293 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 49.6 bits (118), Expect = 4e-06
Identities = 23/64 (35%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIII-DGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556
VG +G GKS++ + R+ +P +G III D +++ + L RS++ ++ QDP+LFS ++
Sbjct: 417 VGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSI 476
Query: 557 RLNL 560
+ N+
Sbjct: 477 KNNI 480
|
Length = 1466 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 4e-06
Identities = 27/84 (32%), Positives = 42/84 (50%), Gaps = 9/84 (10%)
Query: 473 AVLSKETLNAGLVGL----SVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTII 524
+L E L+AG + VS ++ G ++GR GAGK++L + ++ P G II
Sbjct: 2 PMLEVENLSAGYGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 525 IDGVDIRTLGLHTL-RSRLTIIPQ 547
DG DI L H R + +P+
Sbjct: 62 FDGEDITGLPPHERARLGIAYVPE 85
|
Length = 237 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 4e-06
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDP 549
VG++G TG+GKS+L L +++P G IIIDGVDI + + L +R ++ ++ Q P
Sbjct: 36 VGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYP 92
|
Length = 287 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 48.4 bits (116), Expect = 4e-06
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL + ++L+LDE T+A+D I+ I+ T++ + H +
Sbjct: 148 GQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAA 207
Query: 413 D-SDRVLVLDKGLVVEFDSP 431
SDR G +VE+
Sbjct: 208 RISDRTAFFYDGELVEYGPT 227
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 4e-06
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 37/226 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
EL+G++G GAGK++L A+ +I PA GT+ + G H + +PQ
Sbjct: 7 ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKGWRH-----IGYVPQRHE-- 59
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR- 331
F + P+SV + + + I + A L+R
Sbjct: 60 FAWDF----------PISVAHTVM--------SGRTGHIGWLRRPCVADFAAVRDALRRV 101
Query: 332 -LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
L ++ P+ GE ++G GQRQ + +ARAL + +L+LDE +D+ T +L+
Sbjct: 102 GLTELADRPV----GE-LSG--GQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTE 154
Query: 391 TIRS-EFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVEFDSPSVL 434
A +L H L + + DRV++L+ G V+ +P L
Sbjct: 155 LFIELAGAGTAILMTTHDLAQAMATCDRVVLLN-GRVIADGTPQQL 199
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 48.6 bits (117), Expect = 4e-06
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL K+L+ DEAT+A+D T +L++ I E T++ I H +
Sbjct: 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKD-INREL-GLTIVLITHEM 201
Query: 409 NTI--IDSDRVLVLDKGLVVE 427
+ + I DRV V+D G +VE
Sbjct: 202 DVVKRI-CDRVAVIDAGRLVE 221
|
Length = 343 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 4e-06
Identities = 50/202 (24%), Positives = 80/202 (39%), Gaps = 37/202 (18%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII----DGVDIRTLGLHTLRSRLTIIPQV 268
E V + G +GAGKS+L +L+ P G I++ VD+ +V
Sbjct: 35 ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR----------EV 84
Query: 269 LAT-IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVAT 325
L I Y + F+ VI VS L +V +PL+ +
Sbjct: 85 LEVRRKTIGYVSQ-FLRVIPRVSAL------------EVVAEPLLERG--VPREAARARA 129
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
L RL R ++ T +G G++Q + +AR + IL+LDE TA++D
Sbjct: 130 RELLARLNIPER--LWHLPPATFSG--GEQQRVNIARGFIADYPILLLDEPTASLDAANR 185
Query: 386 DLIQSTIRSEFAH-CTVLTIAH 406
++ I A ++ I H
Sbjct: 186 QVVVELIAEAKARGAALIGIFH 207
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 4e-06
Identities = 68/224 (30%), Positives = 107/224 (47%), Gaps = 49/224 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLH-TLRSRLTIIPQV 268
E+V + G GAGKS+L L + P +G II +G +++ + T R+ + II Q
Sbjct: 32 EIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQE 90
Query: 269 LATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIF--TEDVKPLIITPF-CSNLQRFYVA 324
LA +V +SVL IF E ITP + Y+
Sbjct: 91 LA---------------LVKELSVL------ENIFLGNE------ITPGGIMDYDAMYLR 123
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAI-D 381
+ L +L + +P T GN +GQ+QL+ +A+AL ++ ++LILDE TA++ +
Sbjct: 124 AQKLLAQL-KLDINP------ATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTE 176
Query: 382 LETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKG 423
ET L+ IR AH + I+H+LN + SD + V+ G
Sbjct: 177 SETAVLL-DIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDG 219
|
Length = 506 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 23/75 (30%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL KI++ DE T +D ET + +R + A T++ + H
Sbjct: 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPEL 203
Query: 411 IIDSDRVLVLDKGLV 425
+DR++ L G +
Sbjct: 204 AEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.9 bits (114), Expect = 5e-06
Identities = 35/122 (28%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Query: 324 ATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
A +R K L+ + P + ++G GQ+Q + +ARAL+ + ++L+ DE TAA+D E
Sbjct: 118 ALARAEKLLKRLRLKPYADRYPLHLSG--GQQQRVAIARALMMEPQVLLFDEPTAALDPE 175
Query: 384 TDDLIQSTIRSEFAHC--TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
I S I+ E A T + + H + + RV+ ++ G +VE S + +
Sbjct: 176 ITAQIVSIIK-ELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTEPQTE 234
Query: 441 IF 442
F
Sbjct: 235 AF 236
|
Length = 242 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 47.5 bits (114), Expect = 6e-06
Identities = 31/84 (36%), Positives = 47/84 (55%), Gaps = 4/84 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V LSV VG++G GAGK++ + +++P G I++DG DI L +H R+RL I
Sbjct: 19 VSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK-RARLGI 77
Query: 545 I--PQDPVLFSG-TLRLNLDPVGE 565
PQ+ +F T+ N+ V E
Sbjct: 78 GYLPQEASIFRKLTVEENILAVLE 101
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 6e-06
Identities = 62/235 (26%), Positives = 96/235 (40%), Gaps = 48/235 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV--LA 270
E G++G GAGKS++ + + P G I + GV + R+R+ ++PQ L
Sbjct: 68 ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLD 126
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
F + + VF YF + I E V P ++ +
Sbjct: 127 LEFTVRENLLVF--------GRYFGMSTREI--EAVIPSLL----------------EFA 160
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RLES + + + G G ++ + LARAL+ ++LILDE T +D LI
Sbjct: 161 RLESKADARVSDLSG-------GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
Query: 391 TIRSEFAHC-TVLTIAH------RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+RS A T+L H RL DR+ VL+ G + P L+
Sbjct: 214 RLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLEAGRKIAEGRPHALIDEH 263
|
Length = 340 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 6e-06
Identities = 43/199 (21%), Positives = 89/199 (44%), Gaps = 29/199 (14%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRI---IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269
++ ++G +G GKS+ R+ I DG + I+G D++ + LR + ++ Q
Sbjct: 29 KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQ-- 86
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
VF+ I ++ Y +I +D + ++ C + +L
Sbjct: 87 --------QPNVFVKSIYE-NISYAPKLHGMIKNKDEEEALVVD-CLQKVGLFEEVKDKL 136
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
K+ + + GQ+Q +C+ARAL K K+L+LDE T+A+D + +I+
Sbjct: 137 KQ--------------NALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIE 182
Query: 390 STIRSEFAHCTVLTIAHRL 408
++ + +++ + H +
Sbjct: 183 ELLKELSHNLSMIMVTHNM 201
|
Length = 246 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 49.0 bits (117), Expect = 7e-06
Identities = 25/89 (28%), Positives = 48/89 (53%), Gaps = 22/89 (24%)
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
L I Q+L+T +I + + ++ I+P+ VL++ + +
Sbjct: 1035 LGQIFQLLSTFVLIGIVSTISLWAIMPLLVLFYGAYL----------------------Y 1072
Query: 322 YVATSRQLKRLESVSRSPIYSHFGETVTG 350
Y +T+R++KRL+S++RSP+Y+ FGE + G
Sbjct: 1073 YQSTAREVKRLDSITRSPVYAQFGEALNG 1101
|
Length = 1622 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 210 EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQ 267
E E V ++G G+GKS+L L +++P G +++DG+D + L LR ++ ++ Q
Sbjct: 28 EKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQ 86
|
Length = 235 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 7e-06
Identities = 33/120 (27%), Positives = 52/120 (43%), Gaps = 23/120 (19%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR-LTIIPQDPVLFS 553
+GIVG +G+GKS+L L + +P+ G+I++DG + R + ++ QDP
Sbjct: 36 LGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDP---- 91
Query: 554 GTLRLN-LDPVGESSDEA------------IWKALELAHLNTFVSNLPARLQHEVSEGGE 600
LN VG E I + L+ L + R HE+S GG+
Sbjct: 92 -YSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLP---PSFLDRRPHELS-GGQ 146
|
Length = 252 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 21/55 (38%), Positives = 34/55 (61%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
V I+G G+GKS+++ L +++P G I IDG+ I L +R ++ II Q+P
Sbjct: 38 VAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNP 92
|
Length = 271 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 7e-06
Identities = 22/91 (24%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL + ++++LDE T+A+D I+ + + T++ + H + I
Sbjct: 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAI 209
Query: 413 D-SDRVLVLDKGLVVEF-DSPSVLMKNKASI 441
+D + + +G ++E+ + ++ + K +
Sbjct: 210 RIADYIAFMYRGELIEYGPTREIVERPKNKL 240
|
Length = 250 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 7e-06
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 488 SVSYAMQVGI---VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
VS + G+ +G GAGK++L L + P+ GTI IDG D+ LR R+
Sbjct: 18 GVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGY 76
Query: 545 IPQDP 549
+PQ+
Sbjct: 77 LPQEF 81
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-06
Identities = 24/93 (25%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL +L++DE A+D T D +Q + + T++ + H ++
Sbjct: 139 GQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDE 198
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+DR+ ++ G +V+ +P ++++ A+ F
Sbjct: 199 AFRLADRIAIMKNGEIVQVGTPDEILRSPANDF 231
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 23/75 (30%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
+PE+ + K+ + ++G E + ++GR+G+GKS+L L ++P G I +DGV +
Sbjct: 10 YPEQEQQVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSD 68
Query: 253 LGLHTLRSRLTIIPQ 267
L L S ++++ Q
Sbjct: 69 LE-KALSSLISVLNQ 82
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 8e-06
Identities = 63/236 (26%), Positives = 109/236 (46%), Gaps = 44/236 (18%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276
IVG+TG+GKS+L + +++P GT+ +D + I T +++ I V I +
Sbjct: 38 IVGQTGSGKSTLIQNINALLKPTTGTVTVDDITI------THKTKDKYIRPVRKRIGM-- 89
Query: 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITP--FCSNLQRFYVATSRQLKRL 332
VF F P S L+ ED + +I P F NL R L L
Sbjct: 90 ----VFQF---PESQLF----------EDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDL 132
Query: 333 ----ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
+ +S+SP ++G GQ + I + L I++LDE TA +D ++ +
Sbjct: 133 GFSRDVMSQSPF------QMSG--GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQV 184
Query: 389 QSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
++S + T++ ++H +N + +D V+V+ +G +V SP L K+K +
Sbjct: 185 MRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKKKL 240
|
Length = 286 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 8e-06
Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 15/125 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRL 542
+ + + ++G GAGKS+L L L ++ P G ++IDG +D GL R R+
Sbjct: 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRV 70
Query: 543 TIIPQDP--VLFSGTLR-------LNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQH 593
++ QDP LF+ + LNL + + +AL S L R H
Sbjct: 71 GLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA----SGLRERPTH 126
Query: 594 EVSEG 598
+S G
Sbjct: 127 CLSGG 131
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 8e-06
Identities = 62/232 (26%), Positives = 94/232 (40%), Gaps = 48/232 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV--LA 270
E G++G GAGKS++ L +I P G I + G + + R + ++PQ L
Sbjct: 31 ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARVAIGVVPQFDNLD 89
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
F + + VF YF + I E V P ++ +
Sbjct: 90 PEFTVRENLLVF--------GRYFGMSTREI--EAVIPSLL----------------EFA 123
Query: 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
RLES + + G G ++ + LARAL+ ++LILDE T +D LI
Sbjct: 124 RLESKADVRVALLSG-------GMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 176
Query: 391 TIRSEFAHC-TVLTIAH------RLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435
+RS A T+L H RL DR+ VL+ G + P L+
Sbjct: 177 RLRSLLARGKTILLTTHFMEEAERL-----CDRLCVLESGRKIAEGRPHALI 223
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 9e-06
Identities = 50/183 (27%), Positives = 77/183 (42%), Gaps = 41/183 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVL 269
E V IVG +G+GKS+L L + +P+ G + + G + L LR+R
Sbjct: 37 ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGF---- 92
Query: 270 ATIFVICYSTPVF-IFVIVPVSVLYFFIQVSLIFTEDVK-PLIITPFCSNLQRFYVATSR 327
VF F ++P +L E+V PL L+ A SR
Sbjct: 93 -----------VFQSFHLIP----------NLTALENVALPLE-------LRGESSADSR 124
Query: 328 QLKR--LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETD 385
+ LE+V +H+ ++G G++Q + LARA + +L DE T +D T
Sbjct: 125 AGAKALLEAVGLGKRLTHYPAQLSG--GEQQRVALARAFAGRPDVLFADEPTGNLDRATG 182
Query: 386 DLI 388
D I
Sbjct: 183 DKI 185
|
Length = 228 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 47.1 bits (113), Expect = 9e-06
Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 19/88 (21%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAH-- 406
GQ+Q +C+ARAL K ++L++DE T+A+D L+ ++LI ++ ++ T++ + H
Sbjct: 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITE-LKKKY---TIVIVTHNM 208
Query: 407 ----RLNTIIDSDRVLVLDKGLVVEFDS 430
R+ SD G +VEF
Sbjct: 209 QQAARV-----SDYTAFFYLGELVEFGP 231
|
Length = 253 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
+ +S+S V +VG +GAGKS+L +++ P GTI ++G D+ L + LR +
Sbjct: 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRK 79
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 80 IGVVFQD 86
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 36/105 (34%), Positives = 51/105 (48%), Gaps = 10/105 (9%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTL---GLHTLRS 540
V LSV GI+GR+GAGKS+L + +E P G++++DG D+ L L R
Sbjct: 24 VSLSVPKGEIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARR 82
Query: 541 RLTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL 580
R+ +I Q L S + L L+ G E + LEL L
Sbjct: 83 RIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLEL 127
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 61/239 (25%), Positives = 100/239 (41%), Gaps = 54/239 (22%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIIDGVDIRTLGLHTLRSRLT-IIPQ 267
E++ +VG +G+GKS LA+ ++ P G I++DG + L ++R R I Q
Sbjct: 13 EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL---SIRGRHIATIMQ 69
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
T F P+F ++ I+ + K A +
Sbjct: 70 NPRTAF-----NPLF-------TMGNHAIETLRSLGKLSK---------------QARAL 102
Query: 328 QLKRLESVS-RSP--IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL-- 382
L+ LE+V P + + ++G + QR +I LA LL + LI DE T +D+
Sbjct: 103 ILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALA--LLLEPPFLIADEPTTDLDVVN 160
Query: 383 --ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE-------FDSP 431
L++ +R F +L I H L + +D V V+D G +VE F +P
Sbjct: 161 QARVLKLLRE-LRQLFG-TGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNP 217
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (111), Expect = 1e-05
Identities = 51/229 (22%), Positives = 96/229 (41%), Gaps = 43/229 (18%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
+ GI+G +G+GKS+L L R+IE D I +DG
Sbjct: 38 IFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGK------------------------- 72
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----IITPFCSNLQRFYVATSRQL 329
V+ + +F + + +V ++F + P I L+ + R++
Sbjct: 73 VLYFGKDIF-----QIDAIKLRKEVGMVFQQP-NPFPHLSIYDNIAYPLKSHGIKEKREI 126
Query: 330 KRL--ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDL 382
K++ E + + ++ + + GQ+Q + +ARAL K K+L++DE T+ ID+
Sbjct: 127 KKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDI 186
Query: 383 ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430
I+ I ++ ++H + +D V L G +VE+ S
Sbjct: 187 VNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
|
Length = 257 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-05
Identities = 28/78 (35%), Positives = 48/78 (61%), Gaps = 7/78 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + LARAL+ + +L+LDE A+D +E DLI+S + TVL + H +
Sbjct: 137 GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQH--GFTVLLVTHDV 194
Query: 409 NTIID-SDRVLVLDKGLV 425
+ + +DRVL++++G +
Sbjct: 195 SEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.8 bits (112), Expect = 1e-05
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 7/83 (8%)
Query: 360 LARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-S 414
LARA+ ++L LDE T+ +D D+LI + TV+ + H L++++ +
Sbjct: 156 LARAIALDPELLFLDEPTSGLDPISAGVIDELI-RELNDALG-LTVIMVTHDLDSLLTIA 213
Query: 415 DRVLVLDKGLVVEFDSPSVLMKN 437
DRV VL G V+ +P L+ +
Sbjct: 214 DRVAVLADGKVIAEGTPEELLAS 236
|
Length = 263 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.9 bits (111), Expect = 1e-05
Identities = 35/134 (26%), Positives = 74/134 (55%), Gaps = 12/134 (8%)
Query: 312 TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG----ETVTGNVGQRQLICLARALLRK 367
TPF ++ +Q + L++++R + HF T++G GQ+Q + +ARAL+++
Sbjct: 115 TPFWRTCFSWFTREQKQ-RALQALTRVGM-VHFAHQRVSTLSG--GQQQRVAIARALMQQ 170
Query: 368 TKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424
K+++ DE A++D E+ ++ T+R ++ TV+ H+++ + +R++ L +G
Sbjct: 171 AKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGH 230
Query: 425 VVEFDSPSVLMKNK 438
V +D S N+
Sbjct: 231 VF-YDGSSQQFDNE 243
|
Length = 262 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 2e-05
Identities = 35/128 (27%), Positives = 60/128 (46%), Gaps = 14/128 (10%)
Query: 475 LSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534
SK TL+ + L + V IVG TG GK+SL A+ + A+ + ++
Sbjct: 628 TSKPTLSD--INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV--------- 676
Query: 535 LHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594
+R + +PQ +F+ T+R N+ + E W+A+++ L + LP R E
Sbjct: 677 ---IRGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGRDLTE 733
Query: 595 VSEGGENL 602
+ E G N+
Sbjct: 734 IGERGVNI 741
|
Length = 1495 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 2e-05
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264
E+V ++G +G+GKS+L + + EP G+I+IDG D+ L R I
Sbjct: 27 EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRI 78
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 3/57 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQD 548
V I+G +GAGKS+L + R++EP+ G+I+++G DI L L LR R+ +I Q
Sbjct: 31 VAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQH 87
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 2e-05
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E +G+VG +G GKS+L + + EP G I+ +G DI L
Sbjct: 40 ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL 80
|
Length = 268 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVL 551
+ I+G +G+GKS+L + ++ P G ++IDG DI L L+ LR R+ ++ Q L
Sbjct: 29 LAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGAL 88
Query: 552 FS 553
F
Sbjct: 89 FD 90
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 2e-05
Identities = 31/104 (29%), Positives = 51/104 (49%), Gaps = 17/104 (16%)
Query: 488 SVSYAMQ----VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RL 542
+S+ ++ + I+G G+GKS+L L +IEP G ++ID + G ++ RS R+
Sbjct: 31 PLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPL-HFGDYSYRSQRI 89
Query: 543 TIIPQDPV-----------LFSGTLRLNLDPVGESSDEAIWKAL 575
+I QDP + LRLN D E ++ I + L
Sbjct: 90 RMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETL 133
|
Length = 267 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.9 bits (112), Expect = 2e-05
Identities = 19/50 (38%), Positives = 31/50 (62%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
E + ++G +G+GK++ + R+IEP G I+IDG DI L LR ++
Sbjct: 28 EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKI 77
|
Length = 309 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-05
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
++G +G+GK++ + R+IEP G I+IDG DI L LR ++ + Q LF
Sbjct: 32 LIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFP 88
|
Length = 309 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 23/62 (37%), Positives = 37/62 (59%), Gaps = 3/62 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQDPVL 551
+ I+G +G+GKS+L + ++ P G I+IDG DI L L+ +R R+ ++ Q L
Sbjct: 37 LAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGAL 96
Query: 552 FS 553
FS
Sbjct: 97 FS 98
|
Length = 263 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.0 bits (112), Expect = 2e-05
Identities = 31/93 (33%), Positives = 51/93 (54%), Gaps = 3/93 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAH-RLN 409
GQ+Q + LARAL+ K K+L+ DE + +D ++ IR + + T L + H +
Sbjct: 140 GQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSE 199
Query: 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
SD V+V++KG +++ SP L + AS F
Sbjct: 200 AFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232
|
Length = 351 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 45.7 bits (109), Expect = 2e-05
Identities = 59/243 (24%), Positives = 95/243 (39%), Gaps = 69/243 (28%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTL 258
D + R+G E + + G +GAGK++L L+ + P+ G + I G D+ L L L
Sbjct: 19 HDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLL 77
Query: 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF---FIQVSLIFTEDVKPLIITPFC 315
R R+ ++ Q F + V+ V +P+ V IQ V
Sbjct: 78 RRRIGVVFQ----DFRLLPDRTVYENVALPLEVRGKKEREIQ------RRVGAA------ 121
Query: 316 SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
L V F E ++G G++Q + +ARA++ +L+ DE
Sbjct: 122 ----------------LRQVGLEHKADAFPEQLSG--GEQQRVAIARAIVNSPPLLLADE 163
Query: 376 ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN----TII----DSD-------RVLVL 420
T +D DL + +L + RLN T+I D RV++L
Sbjct: 164 PTGNLD---PDLSER----------ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIIL 210
Query: 421 DKG 423
D G
Sbjct: 211 DDG 213
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 2e-05
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET----DDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL+ KI++ DE T +D +T +L++ + T++ + H
Sbjct: 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKER--GKTIIMVTHDP 203
Query: 409 NTIIDSDRVLVLDKGLVVE 427
+DRV+ L G + E
Sbjct: 204 ELAKYADRVIELKDGKIEE 222
|
Length = 226 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-05
Identities = 53/233 (22%), Positives = 99/233 (42%), Gaps = 36/233 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+ ++G +G GKS+L L +P G I++DGVD L+ +P I
Sbjct: 46 EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVD------------LSHVPPYQRPI 93
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
++ S +F + V ++ + Q L E SR + L
Sbjct: 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAE-------------------IASRVNEML 134
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
V ++G GQRQ + LAR+L ++ K+L+LDE A+D + D +Q +
Sbjct: 135 GLVHMQEFAKRKPHQLSG--GQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEV 192
Query: 393 RS--EFAHCTVLTIAH-RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
E T + + H + + + R+ ++++G V+ P + ++ + +
Sbjct: 193 VDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245
|
Length = 377 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 45.1 bits (108), Expect = 2e-05
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 5/76 (6%)
Query: 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRL 408
GN Q + LAR L R ++LILDE T +D+ I IR VL I+ L
Sbjct: 108 GNQ---QKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSEL 164
Query: 409 NTIID-SDRVLVLDKG 423
+ ++ DR+LV+ +G
Sbjct: 165 DELLGLCDRILVMYEG 180
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 2e-05
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 6/75 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH---CTVLTIAHRLN 409
GQ+Q + +ARAL+ + K+++ DE TAA+D ++ + ++ + A CT+L + H N
Sbjct: 145 GQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQ-KLAREQGCTILIVTHD-N 202
Query: 410 TIID-SDRVLVLDKG 423
I+D +DR++ ++ G
Sbjct: 203 RILDVADRIVHMEDG 217
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 45.6 bits (109), Expect = 2e-05
Identities = 33/91 (36%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDPVLF 552
V I+G +G+GKS+L + + EP GTIIIDG+ + ++ LR ++ ++ Q LF
Sbjct: 29 VVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFNLF 88
Query: 553 SGTLRLN---LDPV---GESSDEAIWKALEL 577
L L P+ G S EA +ALEL
Sbjct: 89 PHLTVLENITLAPIKVKGMSKAEAEERALEL 119
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 45.3 bits (108), Expect = 3e-05
Identities = 23/59 (38%), Positives = 36/59 (61%), Gaps = 5/59 (8%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
E+ GI+GR+GAGKS+L + +E P G++++DG D+ L L R R+ +I Q
Sbjct: 32 EIFGIIGRSGAGKSTL-IRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQ 89
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 3e-05
Identities = 59/224 (26%), Positives = 99/224 (44%), Gaps = 37/224 (16%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRTLGLHTLRSRLTII 265
R G E++G+ G GAG++ L ALF +G + I+G VDIR +R+ + ++
Sbjct: 284 RRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP-AQAIRAGIAMV 341
Query: 266 PQVLATIFVICYSTPVF-IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324
P+ ++ P+ + + +SVL F I +I S +QR V
Sbjct: 342 PEDRKRHGIV----PILGVGKNITLSVLKSFCFKMRIDAAAELQIIG----SAIQRLKVK 393
Query: 325 TSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL-- 382
T+ + +S G +Q LA+ LL ++LILDE T +D+
Sbjct: 394 TASPFLPIGRLSG---------------GNQQKAVLAKMLLTNPRVLILDEPTRGVDVGA 438
Query: 383 --ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
E LI + A ++ ++ L ++ SDRVLV+ +G
Sbjct: 439 KYEIYKLINQLAQEGVA---IIVVSSELAEVLGLSDRVLVIGEG 479
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 3e-05
Identities = 21/55 (38%), Positives = 33/55 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E V I+G G+GKS+++ L +++P G I IDG+ I L +R ++ II Q
Sbjct: 36 EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQ 90
|
Length = 271 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 3e-05
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
E+ G++G +GAGKS+L + + P G +++DG D+ L LR
Sbjct: 32 EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78
|
Length = 343 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
E + ++G +G+GK++ + R+IEP G I IDG DIR LR ++
Sbjct: 28 EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKI 77
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 58/254 (22%), Positives = 96/254 (37%), Gaps = 72/254 (28%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
K + ++G E + ++G +G GKS+L + + +P G +I++G I G R
Sbjct: 2 KGVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDR 56
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
+ + F SL+ P+ + +
Sbjct: 57 MVV------------------------------FQNYSLL-----------PWLTVRENI 75
Query: 322 YVATSRQLKRLESVSRSPIYSHFGETV-------------TGNVGQRQLICLARALLRKT 368
+A R L L R I V +G + QR + +ARAL +
Sbjct: 76 ALAVDRVLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQR--VAIARALSIRP 133
Query: 369 KILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLN-TIIDSDRVLVLDKG-- 423
K+L+LDE A+D T +Q + E TVL + H ++ ++ SDRV++L G
Sbjct: 134 KVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPA 193
Query: 424 ------LVVEFDSP 431
L V F P
Sbjct: 194 ANIGQILEVPFPRP 207
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 3e-05
Identities = 28/79 (35%), Positives = 42/79 (53%), Gaps = 7/79 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G+RQ + LAR L+R +L+LDE AA+D E DL+ + +E TVL + H+
Sbjct: 132 GERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLV-LDLHAE-TKMTVLMVTHQP 189
Query: 409 NTIID-SDRVLVLDKGLVV 426
+ RV+ LD G +
Sbjct: 190 EDAKRLAQRVVFLDNGRIA 208
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 58/231 (25%), Positives = 96/231 (41%), Gaps = 59/231 (25%)
Query: 217 IVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
++G +G+GKS+L R+IE G + +DG DI + + LR R+ ++ Q+
Sbjct: 34 LMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPN- 92
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
P+ L F V+L L R V + ++L+
Sbjct: 93 ----------------PIPNLSIFENVALGL--------------KLNRL-VKSKKELQ- 120
Query: 332 LESVSRSPIYSHFGETVTGNV---------GQRQLICLARALLRKTKILILDEATAAIDL 382
E V + + + V + GQ+Q +C+ARAL + ++L+ DE TA +D
Sbjct: 121 -ERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 383 ETDDLIQSTIRSEFAHCTVLTIAH------RLNTIIDSDRVLVLDKGLVVE 427
E I+S T++ + H R+ SD V L KG +VE
Sbjct: 180 ENTAKIESLFLELKKDMTIVLVTHFPQQAARI-----SDYVAFLYKGQIVE 225
|
Length = 250 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 57/251 (22%), Positives = 108/251 (43%), Gaps = 60/251 (23%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLR 259
+++ I+G +G+GKS+ + + +P++G+I+++G I + L LR
Sbjct: 32 DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLR 91
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ 319
+RLT++ Q ++ + V +V+ IQV + ++
Sbjct: 92 TRLTMVFQHFN----------LWSHMTVLENVMEAPIQVLGLSKQE-------------- 127
Query: 320 RFYVATSRQLKRLESV-----SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
A R +K L V ++ H GQ+Q + +ARAL + ++L+ D
Sbjct: 128 ----ARERAVKYLAKVGIDERAQGKYPVHLSG------GQQQRVSIARALAMEPEVLLFD 177
Query: 375 EATAAIDLETDDLIQSTIR--SEFAH--CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429
E T+A+D E L+ +R + A T++ + H + S V+ L +G + E
Sbjct: 178 EPTSALDPE---LVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234
Query: 430 SPSVLMKNKAS 440
+P L N S
Sbjct: 235 APEQLFGNPQS 245
|
Length = 257 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.7 bits (108), Expect = 3e-05
Identities = 29/90 (32%), Positives = 50/90 (55%), Gaps = 9/90 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR L + +IL+LDE T+A+D + +DLIQ +R + T++ + H +
Sbjct: 186 GQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQE-LRGSY---TIMIVTHNM 241
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD + +G++VE + L N
Sbjct: 242 QQASRVSDYTMFFYEGVLVEHAPTAQLFTN 271
|
Length = 286 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 45.5 bits (108), Expect = 3e-05
Identities = 57/235 (24%), Positives = 111/235 (47%), Gaps = 27/235 (11%)
Query: 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
G+ + + G E+V I+G +G+GK++L + + +P GTI + DI
Sbjct: 14 HGQTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVG--DITIDTA 70
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIFTEDVKPLIITPF 314
+L + +I Q+ + + + F + P +VL I+ +I + K
Sbjct: 71 RSLSQQKGLIRQLRQHVGFVFQN-----FNLFPHRTVLENIIEGPVIVKGEPKEEAT--- 122
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
A +R+L L V + + + ++G GQ+Q + +ARAL + ++++ D
Sbjct: 123 ---------ARAREL--LAKVGLAGKETSYPRRLSG--GQQQRVAIARALAMRPEVILFD 169
Query: 375 EATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427
E T+A+D E + +TIR T++ + H ++ D +DR + +D+G +VE
Sbjct: 170 EPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVE 224
|
Length = 250 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 25/88 (28%), Positives = 48/88 (54%), Gaps = 4/88 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ+Q + +ARAL K+++ DE T+A+D E + ++ + A T++ + H +
Sbjct: 140 GQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMK-DLAEEGMTMIIVTHEMGF 198
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ +DRV+ +D+G ++E P N
Sbjct: 199 AREVADRVIFMDQGKIIEEGPPEEFFDN 226
|
Length = 240 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 3e-05
Identities = 60/258 (23%), Positives = 107/258 (41%), Gaps = 60/258 (23%)
Query: 199 VEFKDYKVRYREGL------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246
++F++ + RY + L E G++G GAGK++ L + P G+I +
Sbjct: 8 IDFRNVEKRYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLC 67
Query: 247 GVDIRTLGLHTLRSRLTIIPQV--LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTE 304
G + + H R R+ ++PQ L F + + VF YF + +
Sbjct: 68 GEPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVF--------GRYFGLSAAAA-RA 117
Query: 305 DVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
V PL+ + +LE+ + + + G G ++ + LARAL
Sbjct: 118 LVPPLL-----------------EFAKLENKADAKVGELSG-------GMKRRLTLARAL 153
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC-TVLTIAH------RLNTIIDSDRV 417
+ +L+LDE T +D + L+ +RS A T+L H RL DR+
Sbjct: 154 VNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERL-----CDRL 208
Query: 418 LVLDKGLVVEFDSPSVLM 435
V+++G + +P L+
Sbjct: 209 CVIEEGRKIAEGAPHALI 226
|
Length = 306 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 13/105 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-- 552
V I+G +G GKS+L + + +P G +++DG + G + + Q+ L
Sbjct: 32 VAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPG-----PDIGYVFQEDALLPW 86
Query: 553 ---SGTLRLNLDPVGESSDEAIWKA---LELAHLNTFVSNLPARL 591
+ L L+ G+S EA +A LEL L F P +L
Sbjct: 87 LTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQL 131
|
Length = 248 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 46.3 bits (110), Expect = 4e-05
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 13/123 (10%)
Query: 22 LHSCMSFFDTTPVGRM-ISRFSQDVETV---DSNLPTFLRS-WINCLFSVLYLMPVTITV 76
L S F + +G M I ++ V D P + + CL S+ +++
Sbjct: 163 LISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPALASAIFFMCLLSIA----SSVSA 218
Query: 77 FFYG--FVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLT 134
G F ++ + R+ E L +S+LR FFD G + SR SSD T+ L+
Sbjct: 219 GLRGGSFNYTMARINL--RIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLS 276
Query: 135 LSV 137
L+V
Sbjct: 277 LNV 279
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 4e-05
Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 6/102 (5%)
Query: 333 ESVSRSPIYSHFGETVTGNV-----GQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
ES+ ++ I+ + + N GQ+Q IC+ARAL + K+++LDE T+A+D +
Sbjct: 126 ESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSE 185
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428
I+ T+ T + + H L SD+ L G ++E
Sbjct: 186 IEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEA 227
|
Length = 251 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 4e-05
Identities = 24/89 (26%), Positives = 54/89 (60%), Gaps = 2/89 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQ++ + +A L + +ILI DE TA +D + + +++Q + ++ + TV I H + +
Sbjct: 180 GQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHV 239
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
++ +D V+V+DKG +++ +P + ++
Sbjct: 240 LEVADEVIVMDKGKILKTGTPYEIFTDQH 268
|
Length = 320 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 22/61 (36%), Positives = 37/61 (60%)
Query: 77 FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLS 136
FF G + L +KRLHE++L S+L+ +T GR+L+RF+ D+ +D+ L L+
Sbjct: 943 FFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLT 1002
Query: 137 V 137
+
Sbjct: 1003 L 1003
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 44.7 bits (107), Expect = 5e-05
Identities = 26/90 (28%), Positives = 50/90 (55%), Gaps = 8/90 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATA----AIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
G++Q++ +ARAL+ + K+L+LDE + I E + I+ +R E T+L +
Sbjct: 136 GEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIR-ELRDEGV--TILLVEQNA 192
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
++ +DR VL++G VV + + L+ +
Sbjct: 193 RFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 44.5 bits (106), Expect = 5e-05
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 12/80 (15%)
Query: 199 VEFKDYKVRYREGLELV-----------GIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
++ ++ RY + L G++G GAGK++L L + P+ GTI IDG
Sbjct: 1 LQLENLTKRYGKKRALDGVSLTLGPGMYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60
Query: 248 VDIRTLGLHTLRSRLTIIPQ 267
D+ LR R+ +PQ
Sbjct: 61 QDVLKQP-QKLRRRIGYLPQ 79
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 44.4 bits (106), Expect = 5e-05
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNT 410
GQ+Q + +ARAL K+++ DE T+A+D E + ++ + A T++ + H +
Sbjct: 139 GQQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMK-DLAEEGMTMVVVTHEMGF 197
Query: 411 IID-SDRVLVLDKG 423
+ +DRV+ +D G
Sbjct: 198 AREVADRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 6e-05
Identities = 16/55 (29%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E+ G++G GAGK++L + +++P G I + G DI+ ++ R+ +P+
Sbjct: 27 EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPE 80
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533
V S+ +G+VG +G GKS+L + + EP G I+ +G DI L
Sbjct: 32 VSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKL 80
|
Length = 268 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 7e-05
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L V I+G TG+GKS L + I+P G I+++G DI L + ++
Sbjct: 18 VSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITN--LPPEKRDISY 75
Query: 545 IPQDPVLF 552
+PQ+ LF
Sbjct: 76 VPQNYALF 83
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-05
Identities = 31/110 (28%), Positives = 58/110 (52%), Gaps = 13/110 (11%)
Query: 319 QRFYVATSRQLKRLESVSRSPIYSHFGETVTG--NVGQRQLICLARALLRKTKILILDEA 376
++ Y + L RL ++ S + + G ++G++Q++ +A+ L ++K++I+DE
Sbjct: 116 KKMYAEADKLLARL-NLRFSS------DKLVGELSIGEQQMVEIAKVLSFESKVIIMDEP 168
Query: 377 TAAI-DLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
T A+ D ET+ L IR + ++ I+HRL I + D V V G
Sbjct: 169 TDALTDTETESLF-RVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
|
Length = 501 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 44.8 bits (107), Expect = 8e-05
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
G++G +GAGKS+L + + P G +++DG D+ L LR
Sbjct: 35 GVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELR 78
|
Length = 343 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 9e-05
Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 172 KEYGETPQEA-EWVNDKKPKDEWPEKGE--VEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
K +G+ PQ+A + + K K+E +K V D + REG E+ I+G +G+GKS+L
Sbjct: 8 KIFGKNPQKAFKLLAKGKSKEEILKKTGQTVGVNDVSLDVREG-EIFVIMGLSGSGKSTL 66
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
+ R+IEP G ++IDG DI + LR
Sbjct: 67 LRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 1e-04
Identities = 29/137 (21%), Positives = 51/137 (37%), Gaps = 17/137 (12%)
Query: 6 SIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFS 65
+ L + +L +SFFD G +ISR + DVE V + + T L S
Sbjct: 80 GQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFT---S 136
Query: 66 VLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSD 125
+L L+ + +F + ++L L L + + R + S
Sbjct: 137 ILLLIGSLVLLFSLSWRLALILLLIL--------------PLLALVLSLLARKSRKLSRR 182
Query: 126 VNTLDNKLTLSVQQTLS 142
V +L + ++LS
Sbjct: 183 VREALGELNARLLESLS 199
|
Length = 567 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 33/116 (28%), Positives = 50/116 (43%), Gaps = 19/116 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-- 552
+ ++G +G GK++L + + P G I+IDG D+ + R + ++ QD LF
Sbjct: 29 LALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RRNIGMVFQDYALFPH 86
Query: 553 --------SGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
G L+L P E LEL L L R HE+S GG+
Sbjct: 87 LTVAENIAFG-LKLRGVPKAEIRARVRE-LLELVGL----EGLLNRYPHELS-GGQ 135
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 43.6 bits (104), Expect = 1e-04
Identities = 28/106 (26%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++ L + P GT I+G IRT R L PQ LF
Sbjct: 31 FGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAARQSLGYCPQFDALFDE 89
Query: 555 -----TLRL-------NLDPVGESSDEAIWKALEL-AHLNTFVSNL 587
LR + E + + + L L N L
Sbjct: 90 LTVREHLRFYARLKGLPKSEIKEEVELLL-RVLGLTDKANKRARTL 134
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 43.8 bits (104), Expect = 1e-04
Identities = 33/107 (30%), Positives = 50/107 (46%), Gaps = 6/107 (5%)
Query: 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TL 556
+G +G+GK++ + R+IEP G I IDG DIR LR ++ + Q LF T+
Sbjct: 33 IGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTV 92
Query: 557 RLNLDPV----GESSDEAIWKALELAHL-NTFVSNLPARLQHEVSEG 598
N+ V ++ +A EL L + R HE+S G
Sbjct: 93 EENIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGG 139
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.7 bits (104), Expect = 1e-04
Identities = 36/103 (34%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLRSRLT 543
+ LSV V I+G +G+GKS+L L + EP G+I +DG D+ + LR ++
Sbjct: 21 ISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80
Query: 544 IIPQDPVLFSGTLRLN------LDPV---GESSDEAIWKALEL 577
++ Q LF L L PV S EA KALEL
Sbjct: 81 MVFQQFNLFP---HLTVLENVTLAPVKVKKLSKAEAREKALEL 120
|
Length = 240 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.3 bits (103), Expect = 1e-04
Identities = 26/81 (32%), Positives = 36/81 (44%), Gaps = 17/81 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET----DDLIQSTIRSEFAHCTVLTIAH-- 406
G RQ + +ARAL + K+L+LDE A+D T D + TVL + H
Sbjct: 134 GMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEET--RKTVLLVTHDV 191
Query: 407 ----RLNTIIDSDRVLVLDKG 423
L +DRV+VL
Sbjct: 192 DEAVYL-----ADRVVVLSNR 207
|
Length = 248 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 30/83 (36%), Positives = 46/83 (55%), Gaps = 13/83 (15%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-------RSEFAHCTVLTIA 405
GQ Q +CLARAL + K+LILDEA + +DL ++Q+ + + +F + I
Sbjct: 155 GQLQRVCLARALAVEPKLLILDEAVSNLDL----VLQAGVIRLLKKLQQQFGTACLF-IT 209
Query: 406 HRLNTIID-SDRVLVLDKGLVVE 427
H L + RV+V+D G +VE
Sbjct: 210 HDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 43.2 bits (103), Expect = 1e-04
Identities = 29/76 (38%), Positives = 39/76 (51%), Gaps = 13/76 (17%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ---STIRSEFAHCTVLTIAHRLN 409
G RQ + LARAL +L+LDE +A+D T + +Q I E TVL + H
Sbjct: 135 GMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRE-TGKTVLLVTHD-- 191
Query: 410 TIID-----SDRVLVL 420
ID +DRV+VL
Sbjct: 192 --IDEAVFLADRVVVL 205
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411
G R+ + +A +L+ + +L LDE T +D T I IR+ T+L H +
Sbjct: 128 GMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEA 187
Query: 412 ID-SDRVLVLDKGLVVEFDSPSVL 434
DR+ ++D G ++ +P L
Sbjct: 188 DKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (103), Expect = 1e-04
Identities = 29/79 (36%), Positives = 45/79 (56%), Gaps = 6/79 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
GQ+Q + +ARAL+ + ++L+ DE TAA+D E I S IR E A T + + H +
Sbjct: 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIR-ELAETGITQVIVTHEVEV 203
Query: 411 I--IDSDRVLVLDKGLVVE 427
S RV+ ++ G +VE
Sbjct: 204 ARKTAS-RVVYMENGHIVE 221
|
Length = 242 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 44.6 bits (105), Expect = 2e-04
Identities = 26/84 (30%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 520 DGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGE-SSDEAIWKALELA 578
G I++DGVDI L LR+ +I+ Q+P+LF+ ++ N+ E ++ E + +A + A
Sbjct: 1276 SGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFA 1335
Query: 579 HLNTFVSNLPARLQHEVSEGGENL 602
++ F+ +LP + V G++L
Sbjct: 1336 AIDEFIESLPNKYDTNVGPYGKSL 1359
|
Length = 1466 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-04
Identities = 62/249 (24%), Positives = 101/249 (40%), Gaps = 49/249 (19%)
Query: 194 PEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+G KD R G E+VGI G G G+S L A+ + +PA G I+++G D+
Sbjct: 267 DRRGVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGR 325
Query: 254 GLHTLRSRLTI--IPQ------------VLATIFVICYSTPVFIFVIVPVSVLYFFIQVS 299
R RL + +P+ + + + + F F+
Sbjct: 326 LSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPF--------SRGGFLDRR 377
Query: 300 LIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359
I + + LI + F V S+S G GN Q++LI
Sbjct: 378 AI-RKFARELI--------EEFDVRAPSPDAPARSLS--------G----GN--QQKLI- 413
Query: 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRV 417
LAR L R+ +LI + T +D+ + I + A VL I+ L+ I++ SDR+
Sbjct: 414 LARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRI 473
Query: 418 LVLDKGLVV 426
V+ +G +V
Sbjct: 474 AVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 38/231 (16%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LR 259
F++ + R G E++G+ G GAG++ L L+ + G I+++G +I L L
Sbjct: 279 FRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLA 337
Query: 260 SRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI--ITPFCSN 317
L +P+ Q S ++ + PL + N
Sbjct: 338 RGLVYLPEDR---------------------------QSSGLYLD--APLAWNVCALTHN 368
Query: 318 LQRFYVATSRQLKRLESVSRS-PI-YSHFGETV-TGNVGQRQLICLARALLRKTKILILD 374
+ F++ +R+ LE R+ I ++H + T + G +Q + +A+ L ++LI+D
Sbjct: 369 RRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVD 428
Query: 375 EATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKG 423
E T +D+ + I IRS A + VL I+ L I +DRVLV+ +G
Sbjct: 429 EPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
Length = 510 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 44.1 bits (104), Expect = 2e-04
Identities = 24/56 (42%), Positives = 32/56 (57%), Gaps = 3/56 (5%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
+VG +G+GKS+ AL R++E G II +G I TL L LR + I QDP
Sbjct: 355 LVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDP 410
|
Length = 623 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 21/57 (36%), Positives = 36/57 (63%), Gaps = 2/57 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQ 267
E+V I+G +G+GKS+L + + EP GTIIIDG+ + ++ LR ++ ++ Q
Sbjct: 27 EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQ 83
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271
++G G GKS+L R++ P GT+ + I L L RL ++PQ T
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT 87
|
Length = 255 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC---TVLTIAHRL 408
G+++ + +ARAL++ ++LILDE +DL + + + + A +L + H
Sbjct: 174 QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHA 233
Query: 409 NTIIDS-DRVLVLDKGLVV 426
I L+L +G VV
Sbjct: 234 EEIPPCFTHRLLLKEGEVV 252
|
Length = 257 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 2e-04
Identities = 28/105 (26%), Positives = 49/105 (46%), Gaps = 27/105 (25%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL--------ETDDLIQSTIRSEFAHCTVLTI 404
GQ+Q + LARAL+ + K+L+LDE +A+D E +L + T + +
Sbjct: 140 GQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQREL------GITFVYV 193
Query: 405 AHRLNTIID-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
H D SDR+ V++ G + + +P + + A+ F
Sbjct: 194 TH------DQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRF 232
|
Length = 352 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.1 bits (101), Expect = 2e-04
Identities = 55/224 (24%), Positives = 95/224 (42%), Gaps = 38/224 (16%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQVLAT 271
+ G+VG G GKS+L + L ++ P G ++ G +D GL LR Q +AT
Sbjct: 29 VTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR-------QQVAT 81
Query: 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKR 331
+F P + Y I + F+ L+ V + +R
Sbjct: 82 VF----QDP-------EQQIFYTDIDSDIAFS--------------LRNLGVPEAEITRR 116
Query: 332 LESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
++ HF + GQ++ + +A AL+ + + L+LDE TA +D +
Sbjct: 117 VDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 390 STIRSEFAHCTVLTI-AHRLNTIID-SDRVLVLDKGLVVEFDSP 431
+ IR A + I +H ++ I + SD V VL +G ++ +P
Sbjct: 177 AIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAP 220
|
Length = 271 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 2e-04
Identities = 28/80 (35%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
G +Q + +A ALL +LILDE T +D E +LI S TVL +H L
Sbjct: 130 GMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQG---ITVLISSHLL 186
Query: 409 NTI-IDSDRVLVLDKGLVVE 427
+ I +DR+ +++KG ++E
Sbjct: 187 SEIQKVADRIGIINKGKLIE 206
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-04
Identities = 54/214 (25%), Positives = 91/214 (42%), Gaps = 34/214 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E+VG +G GAGK++ L +++P G ++R GL + R + L I
Sbjct: 48 EIVGFIGPNGAGKTTTLKILSGLLQPTSG-------EVRVAGLVPWKRR----KKFLRRI 96
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
V+ + + + Y + D+ P F L +L L
Sbjct: 97 GVVFGQKTQLWWDLPVIDSFYLLAAIY-----DLPP---ARFKKRLDEL-----SELLDL 143
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + +P+ ++GQR +A ALL + +IL LDE T +D+ + I++ +
Sbjct: 144 EELLDTPVRQL-------SLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFL 196
Query: 393 RSEFAH--CTVLTIAHRLNTIID-SDRVLVLDKG 423
+ TVL +H + I + RVLV+DKG
Sbjct: 197 KEYNRERGTTVLLTSHYMKDIEALARRVLVIDKG 230
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARAL + ++L++DE T+A+D L+ ++LIQ + T++ + H +
Sbjct: 150 GQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKK----DYTIVIVTHNM 205
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VEF L N
Sbjct: 206 QQASRISDKTAFFLNGEIVEFGDTVDLFTN 235
|
Length = 250 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 2e-04
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTI 411
G+R+ + +A L+ +L LDE T+ +D + + S +R T++ H+ ++
Sbjct: 115 GERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSE 174
Query: 412 IDS--DRVLVLDKGLVV 426
I D++L+L +G V+
Sbjct: 175 IFELFDKLLLLSQGRVI 191
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 2e-04
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +G++GR GAGKS+L L I P GT+ + G
Sbjct: 49 ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 2e-04
Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 52/213 (24%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++GI+G G GK++ L +++P +G I I+ + + + +L++I
Sbjct: 26 EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKADYEGTVRDLLSSI 85
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
Y+ P F TE KPL I R++ L
Sbjct: 86 TKDFYTHPYFK-------------------TEIAKPLQIEQI----------LDREVPEL 116
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
G+ Q + +A L + I +LDE +A +D+E + I
Sbjct: 117 SG------------------GELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVI 158
Query: 393 R--SEFAHCTVLTIAHRLNTIID--SDRVLVLD 421
R +E T + H + +ID +DR++V +
Sbjct: 159 RRFAENNEKTAFVVEHDI-IMIDYLADRLIVFE 190
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 43.4 bits (103), Expect = 3e-04
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 9/71 (12%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLH 256
D ++ G E V IVG +G+GKS+ L R++ P G++ DG D+ L +
Sbjct: 469 LDDVSLQIEPG-EFVAIVGPSGSGKST----LLRLLLGFETPESGSVFYDGQDLAGLDVQ 523
Query: 257 TLRSRLTIIPQ 267
+R +L ++ Q
Sbjct: 524 AVRRQLGVVLQ 534
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.5 bits (102), Expect = 3e-04
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 474 VLSKETLNAGLVGLSVSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529
+L K L+ G+ S A++ G I+G +G+GKS++ L R+IEP G ++IDGVD
Sbjct: 34 ILEKTGLSLGVK--DASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVD 91
Query: 530 IRTLGLHTLR 539
I + LR
Sbjct: 92 IAKISDAELR 101
|
Length = 400 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 3e-04
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
E++ I+G +G+GKS+L + ++ P G ++IDG DI L L
Sbjct: 27 EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELY 73
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.2 bits (99), Expect = 3e-04
Identities = 32/91 (35%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 464 LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523
+ T +A LA K V L+V+ VG++G GAGK++ + I+ G I
Sbjct: 1 MATLTAKNLAKAYKGRRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNI 60
Query: 524 IIDGVDIRTLGLHTLRSRLTI--IPQDPVLF 552
IID DI L LH R+R I +PQ+ +F
Sbjct: 61 IIDDEDISLLPLHA-RARRGIGYLPQEASIF 90
|
Length = 241 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 3e-04
Identities = 25/88 (28%), Positives = 50/88 (56%), Gaps = 3/88 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ++ + +A + + KILILDE TA +D + D I + I+ + + T++ ++H +
Sbjct: 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMED 207
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+ +DR++V++KG +P + K
Sbjct: 208 VAKLADRIIVMNKGKCELQGTPREVFKE 235
|
Length = 287 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 20/53 (37%), Positives = 33/53 (62%), Gaps = 3/53 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRL 262
E++ I+G +G+GKS+L + ++ P G I+IDG DI L L+ +R R+
Sbjct: 35 EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRM 87
|
Length = 263 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.7 bits (100), Expect = 3e-04
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL +IL+ DE T+A+D I+ I T+L + H +
Sbjct: 165 GQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAA 224
Query: 413 D-SDRVLVLDKGLVVEF---DSPSVLMKNKAS 440
SD + G ++EF D+ + KNK +
Sbjct: 225 RVSDYTAYMYMGELIEFGATDTIFIKPKNKQT 256
|
Length = 265 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 41.2 bits (96), Expect = 3e-04
Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 15/117 (12%)
Query: 321 FYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAI 380
Y+ L+ + I + +G + R + A A K +LILDE T+ +
Sbjct: 34 IYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLAL--ALARKLKPDVLILDEITSLL 91
Query: 381 DLETDDLIQSTIRS-------EFAHCTVLTIAHRLNTIID------SDRVLVLDKGL 424
D E + L+ + TV+ + + DR +VL L
Sbjct: 92 DAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLIL 148
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.6 bits (100), Expect = 3e-04
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 45/235 (19%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLAT 271
E+V ++G GAGK++L L G I+ DG DI +R + I+P+
Sbjct: 32 EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPE---- 87
Query: 272 IFVICYSTPVFIFVIVPVSVLY--FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
VF + V ++ FF + F ++ Y R
Sbjct: 88 ------GRRVFSRMTVEENLAMGGFFAER-------------DQFQERIKWVYELFPRLH 128
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAA----IDLETD 385
+R + R+ T++G G++Q++ + RAL+ + ++L+LDE + I +
Sbjct: 129 ER--RIQRA-------GTMSG--GEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIF 177
Query: 386 DLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
D I+ +R + T+ + N + +DR VL+ G VV D+ L+ N+A
Sbjct: 178 DTIEQ-LREQ--GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLANEA 229
|
Length = 237 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
GQR LA ALL K+L LDE T +D+ I+ ++ TVL H +
Sbjct: 160 GQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDD 219
Query: 411 IID-SDRVLVLDKGLVVEFDSP 431
I DRVL++D+G +V FD
Sbjct: 220 IATLCDRVLLIDQGQLV-FDGT 240
|
Length = 325 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 24/51 (47%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 259
EG E+ I+G +G+GKS+L L R+IEP G I++DG DI L LR
Sbjct: 52 EEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
|
Length = 386 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 3e-04
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
I+G +G+GKS+L L R+IEP G I++DG DI L LR
Sbjct: 59 IMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELR 101
|
Length = 386 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 3e-04
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 1/79 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L KI++LDE T+A+D + I+ T+ T+L + +
Sbjct: 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
Query: 413 D-SDRVLVLDKGLVVEFDS 430
SDR G ++E++
Sbjct: 212 RISDRTGFFLDGDLIEYND 230
|
Length = 252 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-04
Identities = 21/74 (28%), Positives = 44/74 (59%), Gaps = 7/74 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH-R--LN 409
G++ + LA+ LL +L+LDE T +DLE+ + ++ ++ E+ TV+ ++H R L+
Sbjct: 74 GEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALK-EY-PGTVILVSHDRYFLD 131
Query: 410 TIIDSDRVLVLDKG 423
+ +++ L+ G
Sbjct: 132 QVA--TKIIELEDG 143
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.4 bits (102), Expect = 4e-04
Identities = 54/240 (22%), Positives = 106/240 (44%), Gaps = 46/240 (19%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273
LV IVG TG GK+SL A+ + A+ + ++ +R + +PQV
Sbjct: 645 LVAIVGGTGEGKTSLISAMLGELSHAETSSVV------------IRGSVAYVPQV----- 687
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ--LKR 331
+IF ++ +++F D + R T+ Q L
Sbjct: 688 -------SWIFNAT--------VRENILFGSDFES-------ERYWRAIDVTALQHDLDL 725
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-TDDLIQS 390
L + I G ++G GQ+Q + +ARA+ + I I D+ +A+D + S
Sbjct: 726 LPGRDLTEI-GERGVNISG--GQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDS 782
Query: 391 TIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
++ E T + + ++L+ + DR++++ +G++ E + + L K+ S+F + ++AG
Sbjct: 783 CMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKKLMENAG 841
|
Length = 1495 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 51/203 (25%), Positives = 83/203 (40%), Gaps = 34/203 (16%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDI 250
+P EV K G E++ ++G GAGKS+L L L ++ P G ++IDG +D
Sbjct: 1 YPGGPEV-LKGLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLI 310
GL R R V + P L F V +DV
Sbjct: 59 SRKGLLERRQR-------------------VGLVFQDPDDQL-FAADVD----QDVA--- 91
Query: 311 ITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370
P L V R + L +V S + ++G G+++ + +A A+ + +
Sbjct: 92 FGPLNLGLSEAEV-ERRVREALTAVGASGLRERPTHCLSG--GEKKRVAIAGAVAMRPDV 148
Query: 371 LILDEATAAIDLETDDLIQSTIR 393
L+LDE TA +D + + + +R
Sbjct: 149 LLLDEPTAGLDPAGREQMLAILR 171
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 41.6 bits (99), Expect = 4e-04
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
R G E+VGI G G G++ L ALF + PA G I +DG +
Sbjct: 24 RAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 4e-04
Identities = 28/94 (29%), Positives = 49/94 (52%), Gaps = 11/94 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF------AHCTVLTIAH 406
G +Q + LARAL IL++DEA +A+ D LI+ ++ E T++ I H
Sbjct: 164 GMQQRVGLARALAVDPDILLMDEAFSAL----DPLIRREMQDELLRLQAELQKTIVFITH 219
Query: 407 RLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
L+ + DR+ ++ G +V+ +P ++ N A
Sbjct: 220 DLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPA 253
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 4e-04
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+G++GR GAGKS+L L I P GT+ + G
Sbjct: 51 IGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRG 83
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 4e-04
Identities = 18/29 (62%), Positives = 22/29 (75%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQRQ + +ARAL K KIL++DE TA ID
Sbjct: 153 GQRQRLVIARALAMKPKILLMDEPTANID 181
|
Length = 253 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 4e-04
Identities = 24/64 (37%), Positives = 41/64 (64%), Gaps = 8/64 (12%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQS-TIRSEFAHCTVLTIAHR 407
GQ+Q +C+ARAL K K+L++DE +D ++ + LIQS +RSE T++ ++H
Sbjct: 154 GQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSEL---TMVIVSHN 210
Query: 408 LNTI 411
L+ +
Sbjct: 211 LHQV 214
|
Length = 261 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 5e-04
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
IVG +G+GKS+L L + G I+++G ++ + HTLR + +PQ
Sbjct: 501 SKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQ 555
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 5e-04
Identities = 33/114 (28%), Positives = 50/114 (43%), Gaps = 13/114 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FS 553
V I+G GAGKS+L AL + P G + ++G + L R ++PQ L F
Sbjct: 31 VAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFP 90
Query: 554 GT----LRLNLDPVGESSDE---AIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
T + + P G S E + AL +++L R ++S GGE
Sbjct: 91 FTVEEVVAMGRAPHGLSRAEDDALVAAALAQ----VDLAHLAGRDYPQLS-GGE 139
|
Length = 258 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 26/76 (34%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTI 411
GQ+Q + +A ALL +LI DE T+ +D + + + IR A V+ I H +
Sbjct: 130 GQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFL 189
Query: 412 ID-SDRVLVLDKGLVV 426
DRVL+L G +V
Sbjct: 190 AKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 5e-04
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250
D + G E++ + G+ GAGK++L L +I+ + G+I+++G I
Sbjct: 17 DDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPI 64
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 5e-04
Identities = 63/233 (27%), Positives = 105/233 (45%), Gaps = 49/233 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTL---GLHTLRSRLTIIP 266
E +GIVG +G+GKS AL ++ G+ +G +I L L+ LR+
Sbjct: 43 ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRA------ 96
Query: 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326
+ ++ IF P++ L +++V E L++ S + F +
Sbjct: 97 EQISMIFQD------------PMTSLNPYMRVGEQLME---VLMLHKGMSKAEAF-EESV 140
Query: 327 RQL---KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE 383
R L K E+ R +Y H +G G RQ + +A ALL + K+LI DE T A+D+
Sbjct: 141 RMLDAVKMPEARKRMKMYPH---EFSG--GMRQRVMIAMALLCRPKLLIADEPTTALDVT 195
Query: 384 TDDLIQSTI-------RSEFAHCTVLTIAHRLNTIIDS-DRVLVLDKGLVVEF 428
+Q+ I + EF + ++ I H L + D+VLV+ G +E+
Sbjct: 196 ----VQAQIMTLLNELKREF-NTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243
|
Length = 330 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 5e-04
Identities = 26/64 (40%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLRSRLTIIPQDP--VLF 552
I+G GAGKS+L L I++P+ G I+ DG +D GL LR + ++ QDP LF
Sbjct: 37 ILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLF 96
Query: 553 SGTL 556
S ++
Sbjct: 97 SASV 100
|
Length = 283 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (98), Expect = 5e-04
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 1/78 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K +L+LDE +A+D ++ I+ I +++ + H + +
Sbjct: 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQAL 227
Query: 413 D-SDRVLVLDKGLVVEFD 429
SDR G +VE+D
Sbjct: 228 RVSDRTAFFLNGDLVEYD 245
|
Length = 268 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.0 bits (99), Expect = 5e-04
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ K IL++DE +A+D + ++ T+ + T++ + H +
Sbjct: 167 GQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAA 226
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD G ++E+D + N
Sbjct: 227 RASDYTAFFYLGDLIEYDKTRNIFTN 252
|
Length = 267 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 42.8 bits (101), Expect = 6e-04
Identities = 30/109 (27%), Positives = 50/109 (45%), Gaps = 14/109 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS 553
V IVG TG GK+SL A+ + P +D +++I R + +PQ +F+
Sbjct: 646 VAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQVSWIFN 692
Query: 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R N+ E +A+++ L + LP E+ E G N+
Sbjct: 693 ATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNI 741
|
Length = 1622 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 6e-04
Identities = 25/75 (33%), Positives = 43/75 (57%), Gaps = 3/75 (4%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
L+V+ V I+G +GAGKS+L + IEPA G+I ++ GL + ++++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSH--TGLAPYQRPVSMLF 76
Query: 547 QDPVLFSG-TLRLNL 560
Q+ LF+ T+R N+
Sbjct: 77 QENNLFAHLTVRQNI 91
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 6e-04
Identities = 19/43 (44%), Positives = 28/43 (65%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539
I+G +G+GKS+L + R+IEP G ++IDG DI + LR
Sbjct: 55 IMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELR 97
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 6e-04
Identities = 21/66 (31%), Positives = 33/66 (50%), Gaps = 13/66 (19%)
Query: 199 VEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+E +D K Y +G E+V ++G GAGKS+L L I++P G ++I
Sbjct: 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLI 61
Query: 246 DGVDIR 251
G I+
Sbjct: 62 KGEPIK 67
|
Length = 275 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 6e-04
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 4/99 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ + G G GK++L L ++ P G + +G + R+ L + +
Sbjct: 29 LQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL 88
Query: 555 TLRLNLD---PVGESSDEAIWKALELAHLNTFVSNLPAR 590
+ NL + + I AL L F +LPA
Sbjct: 89 SALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAA 126
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 6e-04
Identities = 29/94 (30%), Positives = 52/94 (55%), Gaps = 10/94 (10%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARA+ +++++DE +A+D + +DLI+ + E+ TV+ + H +
Sbjct: 184 GQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEE-LAEEY---TVVIVTHNM 239
Query: 409 NTIID-SDRVLV-LDKGLVVEFDSPSVLMKNKAS 440
SD+ V L G +VEFD + +N S
Sbjct: 240 QQAARISDKTAVFLTGGELVEFDDTDKIFENPES 273
|
Length = 285 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 6e-04
Identities = 57/230 (24%), Positives = 89/230 (38%), Gaps = 50/230 (21%)
Query: 213 ELVGIVGRTGAGKSSLTLAL--FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E+ I+G G+GKS+L + E +G I+ DG DI L R+R I LA
Sbjct: 31 EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE-RARAGIF---LA 86
Query: 271 TIFVICYSTPVFIFVIVP-VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+ PV I P V+ F N +R +
Sbjct: 87 ------FQYPVEI----PGVTNSDFLRA-----------------AMNARRGARGILPEF 119
Query: 330 KR-----LESVSRSPIYSH--FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDL 382
+ E + + E +G G+++ + + LL + K+ ILDE + +D+
Sbjct: 120 IKELKEKAELLGLDEEFLERYVNEGFSG--GEKKRNEILQLLLLEPKLAILDEPDSGLDI 177
Query: 383 ETDDLIQSTI---RSEFAHCTVLTIAH--RLNTIIDSDRVLVLDKGLVVE 427
+ ++ I R E VL I H RL I D+V VL G +V+
Sbjct: 178 DALKIVAEGINALREE--GRGVLIITHYQRLLDYIKPDKVHVLYDGRIVK 225
|
Length = 251 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (97), Expect = 6e-04
Identities = 23/60 (38%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+ARAL K K+L++DE +A+D ++ ++LI S +RSE T+ + H +
Sbjct: 154 GQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHS-LRSEL---TIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 7e-04
Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 5/49 (10%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-----TLGLH 256
E +GI+G +G+GKS+L L I P G++ +DG D+R LG H
Sbjct: 363 EALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411
|
Length = 580 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 24/62 (38%), Positives = 33/62 (53%), Gaps = 10/62 (16%)
Query: 197 GEVE-FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIR 251
G E KD + +G E V ++G +G GKS+ L R+I EP G I+IDG D+
Sbjct: 14 GSFEVLKDVNLDIEDG-EFVVLLGPSGCGKST----LLRMIAGLEEPTSGEILIDGRDVT 68
Query: 252 TL 253
L
Sbjct: 69 DL 70
|
Length = 338 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 7e-04
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 7/68 (10%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR---TLGLHTLRSR 541
VS+ ++ G +VG +G GKS+L L I P G + G D+ LR +
Sbjct: 34 VSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQK 93
Query: 542 LTIIPQDP 549
+ I+ Q+P
Sbjct: 94 IQIVFQNP 101
|
Length = 327 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 46/246 (18%), Positives = 97/246 (39%), Gaps = 68/246 (27%)
Query: 201 FKDYKV------RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL- 253
F D K G E+ G++G GAGK++ + ++EP +G I +G +
Sbjct: 12 FGDKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI 70
Query: 254 -----------GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIF 302
GL+ ++T+ Q+ + ++ +
Sbjct: 71 KNRIGYLPEERGLY---PKMTVEDQLK------------------------YLAELKGMP 103
Query: 303 TEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362
+++ + L+R + + K+++ +S+ G +Q I
Sbjct: 104 KAEIQKKLQAW----LERLEIVGKKT-KKIKELSK---------------GNQQKIQFIS 143
Query: 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVL 420
A++ + ++LILDE + +D +L++ I T++ +HR+ + + DR+L+L
Sbjct: 144 AVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLML 203
Query: 421 DKGLVV 426
KG V
Sbjct: 204 KKGQTV 209
|
Length = 300 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.6 bits (98), Expect = 7e-04
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 5/81 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS---TIRSEFAHCTVLTIAHRLN 409
G++Q + + RALL ++L++DE A++DL I +R E + +L ++H L+
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI-NIPILYVSHSLD 190
Query: 410 TIID-SDRVLVLDKGLVVEFD 429
++ +DRV+VL+ G V
Sbjct: 191 EVLRLADRVVVLENGKVKASG 211
|
Length = 352 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-04
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPVLF 552
++G GAGKS+L L + P G I+IDG + L + + + Q+ L
Sbjct: 37 HALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV 95
|
Length = 500 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 8e-04
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E + ++G +G GK++L + + P G I+IDG D+ +
Sbjct: 27 EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGV 67
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 8e-04
Identities = 53/229 (23%), Positives = 102/229 (44%), Gaps = 55/229 (24%)
Query: 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
K+ ++ +G E++ I G TG+GK+SL + + +EP++G I H+ R
Sbjct: 54 KNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKI-----------KHSGR-- 99
Query: 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF 321
I +S+ Q S I +K II + R+
Sbjct: 100 -------------ISFSS-----------------QFSWIMPGTIKENIIFGVSYDEYRY 129
Query: 322 Y-VATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
V + QL+ E +++ P + G T++G GQR I LARA+ + + +LD
Sbjct: 130 KSVVKACQLE--EDITKFPEKDNTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDS 185
Query: 376 ATAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+D+ T+ ++ +S + A+ T + + ++ + +D++L+L +G
Sbjct: 186 PFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 9e-04
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 5/57 (8%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLGLHTLRSRLTI 264
E+ ++G +G GKS+L L R+ + P +G +++DG DI L + L R +
Sbjct: 27 EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRV 83
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 9e-04
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
++G G GKS+L R++ P GT+ + I L L RL ++PQ +
Sbjct: 33 LIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHL 86
|
Length = 255 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 9e-04
Identities = 22/77 (28%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K +++LDE T+A+D + I++ + T++ + H ++
Sbjct: 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQAS 211
Query: 413 D-SDRVLVLDKGLVVEF 428
SD+ G ++EF
Sbjct: 212 RISDKTAFFLTGNLIEF 228
|
Length = 252 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 23/67 (34%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS 260
K++ + +G E V I+GR+G+GKS+L L +P G+I ++GV+I +L LR
Sbjct: 354 LKNFNLTLAQG-EKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRE 412
Query: 261 RLTIIPQ 267
++++ Q
Sbjct: 413 TISVLTQ 419
|
Length = 573 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.001
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQ 267
E+ ++G GAGKS+L L + +P G I++DG ++ R+ + ++ Q
Sbjct: 27 EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ 82
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 41.0 bits (96), Expect = 0.001
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 497 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530
I+G +G+GKS+ L R+IEP G I IDG +I
Sbjct: 24 IMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENI 57
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.1 bits (96), Expect = 0.001
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLT 543
+ L + +GI+G+ G+GKS+L L L ++ P G +++ G+D L +R +
Sbjct: 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVG 80
Query: 544 IIPQDP 549
I+ Q+P
Sbjct: 81 IVFQNP 86
|
Length = 274 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 495 VGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550
V ++G +G GKS+L R+I EP G I+IDG D+ L + + ++ Q+
Sbjct: 32 VVLLGPSGCGKSTL----LRMIAGLEEPTSGEILIDGRDVT--DLPPEKRGIAMVFQNYA 85
Query: 551 LF-SGTLRLN----LDPVGESSDEAIWK---ALELAHLNTFVSNLPARL 591
L+ T+ N L G E + +L L ++ P +L
Sbjct: 86 LYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134
|
Length = 338 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 68/235 (28%), Positives = 95/235 (40%), Gaps = 59/235 (25%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDG--VDIRT------LGLHTL- 258
R G E++GI G GAG++ L LF +G I IDG V IR G+ +
Sbjct: 286 RRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVP 344
Query: 259 --RSRLTIIPQ--VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL-IITP 313
R R I+P V I ++ L F S I +D L I
Sbjct: 345 EDRKRDGIVPVMGVGKNI---------------TLAALDRFTGGSRI--DDAAELKTILE 387
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
+QR V T+ + +S G +Q LA+ LL KILIL
Sbjct: 388 S---IQRLKVKTASPELAIARLSG---------------GNQQKAVLAKCLLLNPKILIL 429
Query: 374 DEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
DE T ID+ E LI ++ A ++ I+ L ++ SDRVLV+ +G
Sbjct: 430 DEPTRGIDVGAKYEIYKLINQLVQQGVA---IIVISSELPEVLGLSDRVLVMHEG 481
|
Length = 506 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.001
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 21/130 (16%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
V L V V IVG +G+GKS+L L + +P+ G + + G + L LR+R
Sbjct: 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRAR 88
Query: 542 --------LTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKA---LELAHLNTFVSNLPAR 590
+IP L + L L L GESS ++ A LE L +++ PA+
Sbjct: 89 HVGFVFQSFHLIPNLTALENVALPLELR--GESSADSRAGAKALLEAVGLGKRLTHYPAQ 146
Query: 591 LQHEVSEGGE 600
L GGE
Sbjct: 147 LS-----GGE 151
|
Length = 228 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.001
Identities = 20/57 (35%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDP 549
V ++G GAGKS+L L I++P G ++I G I+ L +R + I+ Q+P
Sbjct: 31 VALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNP 87
|
Length = 275 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 489 VSYAMQVG----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
VS+ + G + G +GAGKS+L ++ P G I+++G D+ L + LR +
Sbjct: 21 VSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQ 80
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 81 IGVVFQD 87
|
Length = 223 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/41 (36%), Positives = 24/41 (58%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
E V + G +GAGKS+L ++ P G I+++G D+ L
Sbjct: 29 EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRL 69
|
Length = 223 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.8 bits (95), Expect = 0.001
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARA+ +L++DE +A+D + ++ I T++ + H +
Sbjct: 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAA 209
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VE+D + N
Sbjct: 210 RVSDKTAFFYMGEMVEYDDTKKIFTN 235
|
Length = 250 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 0.001
Identities = 30/80 (37%), Positives = 47/80 (58%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ Q I +ARAL+ + K++I DE +A+D+ +L+Q ++ E +++ IAH L
Sbjct: 165 GQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQ-LQREMG-LSLIFIAHDL 222
Query: 409 NTIID-SDRVLVLDKGLVVE 427
+ SDRVLV+ G VE
Sbjct: 223 AVVKHISDRVLVMYLGHAVE 242
|
Length = 331 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 0.001
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 3/78 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQ+Q + +ARAL+ + K+L+LDE T I I IR +L + L+
Sbjct: 135 GQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDF 194
Query: 411 IID-SDRVLVLDKGLVVE 427
+ +DR V+++G VV
Sbjct: 195 ARELADRYYVMERGRVVA 212
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR + + ++++DE T+A+D I+ + + T++ + H +
Sbjct: 149 GQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQAR 208
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SDR G +VE D V+ N
Sbjct: 209 RISDRTAFFLMGELVEHDDTQVIFSN 234
|
Length = 249 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.001
Identities = 58/251 (23%), Positives = 100/251 (39%), Gaps = 67/251 (26%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFR 234
K P+D+ VE+ D K Y +G E++GI+G G GK++ L
Sbjct: 331 KPPRDDKARDTLVEYPDLKKTYGDFKLEVEEGEIYDG-EVIGILGPNGIGKTTFVKLLAG 389
Query: 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294
+I+P +G D++ ++ PQ ++ + + + + +
Sbjct: 390 VIKPDEG----SEEDLK----------VSYKPQYISPDYDG--TVEDLLRSAIRSAFG-- 431
Query: 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354
S TE VKPL NL+ R + L G+
Sbjct: 432 ---SSYFKTEIVKPL-------NLEDLL---ERPVDELSG------------------GE 460
Query: 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTII 412
Q + +A AL R+ + +LDE +A +D+E ++ IR E T L + H + +I
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI-YMI 519
Query: 413 D--SDRVLVLD 421
D SDR++V +
Sbjct: 520 DYVSDRLIVFE 530
|
Length = 591 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.7 bits (95), Expect = 0.001
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+ARAL +L++DE T+A+D + I+ I T++ + H +
Sbjct: 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAA 218
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD+ G +VE + + + N
Sbjct: 219 RVSDQTAFFYMGELVECNDTNKMFSN 244
|
Length = 259 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.001
Identities = 23/92 (25%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID----LETDDLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q +C+AR L + ++++DE T+A+D L+ ++L+Q ++ ++ +++ + H +
Sbjct: 171 GQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE-LKKDY---SIIIVTHNM 226
Query: 409 NTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
SD+ G V E+D + N +
Sbjct: 227 QQAARISDKTAFFLNGYVNEYDDTDKIFSNPS 258
|
Length = 271 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.001
Identities = 25/75 (33%), Positives = 48/75 (64%), Gaps = 5/75 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID-LETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ++ + +AR ++ + +IL+LDE A ++ ET +L + + +R+E TVL I H +
Sbjct: 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHN-VTVLLIEHDMK 215
Query: 410 TIID-SDRVLVLDKG 423
++ SDR+ V+++G
Sbjct: 216 LVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.9 bits (96), Expect = 0.002
Identities = 56/246 (22%), Positives = 103/246 (41%), Gaps = 58/246 (23%)
Query: 214 LVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
LV IVG TG GK+SL A+ + P +D +++I R + +PQV
Sbjct: 645 LVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RGTVAYVPQV---- 687
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQRFY-----VAT 325
S IF V+ I+ +PF + +R+ A
Sbjct: 688 --------------------------SWIFNATVRDNILFGSPF--DPERYERAIDVTAL 719
Query: 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLET- 384
L L + I G ++G GQ+Q + +ARA+ + + I D+ +A+D
Sbjct: 720 QHDLDLLPGGDLTEI-GERGVNISG--GQKQRVSMARAVYSNSDVYIFDDPLSALDAHVG 776
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYS 444
+ I+ E T + + ++L+ + DR++++ +G++ E + L N +F
Sbjct: 777 RQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQK 835
Query: 445 MAKDAG 450
+ ++AG
Sbjct: 836 LMENAG 841
|
Length = 1622 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/92 (19%), Positives = 35/92 (38%)
Query: 47 TVDSNLPTFLRSWINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWS 106
+D+ L L +L + + ++ S L L + +LR
Sbjct: 40 IIDALLADLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLP 99
Query: 107 PLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQ 138
FFD G ++SR ++DV + N ++ +
Sbjct: 100 LSFFDKAKSGDLISRLTNDVEAVSNLVSTVLV 131
|
Length = 567 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 41.4 bits (97), Expect = 0.002
Identities = 52/223 (23%), Positives = 95/223 (42%), Gaps = 54/223 (24%)
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E +L+ + G TG+GKSSL + + +EP++G I H+ R
Sbjct: 448 KLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----------KHSGR-------- 488
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATS 326
I +S Q S I +K II + R+ V +
Sbjct: 489 -------ISFSP-----------------QTSWIMPGTIKDNIIFGLSYDEYRYTSVIKA 524
Query: 327 RQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID 381
QL+ E ++ P + G T++G GQR I LARA+ + + +LD +D
Sbjct: 525 CQLE--EDIALFPEKDKTVLGEGGITLSG--GQRARISLARAVYKDADLYLLDSPFTHLD 580
Query: 382 LETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423
+ T+ ++ +S + ++ T + + +L + +D++L+L +G
Sbjct: 581 VVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEG 623
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 28/73 (38%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID- 413
Q + LAR L K+LILDE T ID+ I IR A +L I+ L ++
Sbjct: 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGL 467
Query: 414 SDRVLVLDKGLVV 426
SDR+LV+ +G +V
Sbjct: 468 SDRILVMREGRIV 480
|
Length = 500 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 0.002
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E + I+G +G+GKS+L + I P G++ +DG D++ T + +PQ
Sbjct: 345 EALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQ 399
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.6 bits (93), Expect = 0.002
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
E +GIVG +G+GKS+L L + +P+ G+I++DG + R
Sbjct: 34 ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82
|
Length = 252 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 40.6 bits (95), Expect = 0.002
Identities = 34/104 (32%), Positives = 49/104 (47%), Gaps = 8/104 (7%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSR 541
V L V G++G +GAGKS+L + + P G++I+DG D+ TL L R +
Sbjct: 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQ 83
Query: 542 LTIIPQDPVLFS-----GTLRLNLDPVGESSDEAIWKALELAHL 580
+ +I Q L S G + L L+ DE K EL L
Sbjct: 84 IGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL 127
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 11/97 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP----- 549
+ I+G G+GKS+L L +IEP G I+I+ + R+ +I QDP
Sbjct: 42 LAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLN 101
Query: 550 ------VLFSGTLRLNLDPVGESSDEAIWKALELAHL 580
+ LRLN D E + I++ L + L
Sbjct: 102 PRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL 138
|
Length = 267 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.002
Identities = 35/118 (29%), Positives = 49/118 (41%), Gaps = 17/118 (14%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTL----RSRLTIIPQDP 549
V IVG +G+GKS+L L + ++ G + +DG DI L L R + + Q
Sbjct: 33 VAIVGPSGSGKSTL-LNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSF 91
Query: 550 VL---FSGT--LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
L + + L L G E +A EL L RL H SE GG+
Sbjct: 92 NLLPDLTALENVELPLLLAGVPKKERRERAEELLER----VGLGDRLNHYPSELSGGQ 145
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.002
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 5/58 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
V +VG +G GKS+L + + P G +++DG + G + Q L
Sbjct: 33 VALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTGPG-----PDRGYVFQQDALL 85
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 0.002
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 13/120 (10%)
Query: 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDD 386
R L+ LE V + ++G G +Q + LARAL IL++DEA +A+ D
Sbjct: 144 RALEALELVGLEGYADKYPNELSG--GMQQRVGLARALANDPDILLMDEAFSAL----DP 197
Query: 387 LIQSTIRSEFA------HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKA 439
LI++ ++ E T++ I H L+ + DR+ ++ G +V+ +P ++ N A
Sbjct: 198 LIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPA 257
|
Length = 386 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 40.1 bits (94), Expect = 0.002
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDP 549
G+VG +G GKS+ A+ +++ DG + G D+ + +RS + +I QDP
Sbjct: 51 GVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP 107
|
Length = 331 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (94), Expect = 0.002
Identities = 55/229 (24%), Positives = 100/229 (43%), Gaps = 47/229 (20%)
Query: 216 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275
++G TG+GKS+L L +++P +G + + + + + S+ I V + V+
Sbjct: 36 ALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVV------SSTSKQKEIKPVRKKVGVV 89
Query: 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFCSNLQRFYVATSRQLK---- 330
F S +F E V K + P Q F + + K
Sbjct: 90 ------------------FQFPESQLFEETVLKDVAFGP-----QNFGIPKEKAEKIAAE 126
Query: 331 RLESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAID----LET 384
+LE V + F E + GQ + + +A L + ++L+LDE TA +D +E
Sbjct: 127 KLEMVGLA---DEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEM 183
Query: 385 DDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432
L +S +S TV+ + H ++ + D +D V +L+KG ++ +PS
Sbjct: 184 MQLFESIHQS---GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229
|
Length = 288 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 40.6 bits (96), Expect = 0.002
Identities = 58/259 (22%), Positives = 98/259 (37%), Gaps = 83/259 (32%)
Query: 187 KKPKDEWPEKGEVEFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFR 234
+ P+DE + VE+ D + EG E++GIVG G GK++ L
Sbjct: 329 RPPRDESERETLVEYPDLTKKLGDFSLEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAG 387
Query: 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTII--PQVLATIFVICYSTPVFIFVIVPVSVL 292
+++P +G + + L I PQ +I +V
Sbjct: 388 VLKPDEGEVDPE---------------LKISYKPQ--------------YIKPDYDGTVE 418
Query: 293 YFFIQV------SLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGE 346
+ S +E +KPL L+R + +K L
Sbjct: 419 DLLRSITDDLGSSYYKSEIIKPL-------QLERLL---DKNVKDL-------------- 454
Query: 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTI 404
+G G+ Q + +A L R + +LDE +A +D+E + IR +E T L +
Sbjct: 455 --SG--GELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVV 510
Query: 405 AHRLNTIID--SDRVLVLD 421
H + +ID SDR++V +
Sbjct: 511 DHDI-YMIDYISDRLMVFE 528
|
Length = 590 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.002
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+G E VGI+G GAGKS+L + I +P G + + G
Sbjct: 51 YKG-ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
|
Length = 249 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 0.003
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQDPV 550
++G GAGKS+L L + +P G I++DG ++ R+ + ++ Q V
Sbjct: 29 HALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSV 85
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.003
Identities = 23/67 (34%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSR 541
V LS+ VG++GR+G GKS+L L + +PA GT+ G D+ L R
Sbjct: 30 VSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRD 89
Query: 542 LTIIPQD 548
+ ++ QD
Sbjct: 90 VQLVFQD 96
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.003
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531
VGI G G G++ L ALF + PA G I +DG +
Sbjct: 29 VGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVT 65
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 39.4 bits (93), Expect = 0.003
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI--IPQ 267
E+ ++GR G GK++L L ++ G+I +DG DI L H R+R I +PQ
Sbjct: 27 EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHE-RARAGIAYVPQ 82
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.003
Identities = 23/73 (31%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ + ++G GAGKS+L L L I P G + + G ++ +RS++ +
Sbjct: 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83
Query: 545 IPQDP--VLFSGT 555
+ QDP +FS T
Sbjct: 84 VFQDPDDQVFSST 96
|
Length = 274 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.6 bits (92), Expect = 0.003
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q +C+AR L K KI++ DE T+A+D + I+ I + T++ + H +
Sbjct: 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAA 217
Query: 413 D-SDRVLVLDKGLVVEFDSPSVLMKN 437
SD G ++EF + N
Sbjct: 218 RISDYTGFFLMGELIEFGQTRQIFHN 243
|
Length = 258 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.003
Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSL--TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR- 541
V L++ ++G G+GKS+L T+ E +G I+ G DI L R+R
Sbjct: 19 VNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE-ERARL 77
Query: 542 -LTIIPQDPVLFSG 554
+ + Q P G
Sbjct: 78 GIFLAFQYPPEIPG 91
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (92), Expect = 0.003
Identities = 16/29 (55%), Positives = 22/29 (75%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAID 381
GQRQ + LAR L+R+ IL+LDE +A+D
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALD 161
|
Length = 232 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
R G E++GI G GAG++ L ALF + G I++DG +R
Sbjct: 283 RAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVR 324
|
Length = 500 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 0.004
Identities = 30/111 (27%), Positives = 51/111 (45%), Gaps = 16/111 (14%)
Query: 165 IVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVG-------- 216
+ A E + + ETP +K+ P +E +D ++ +G L G
Sbjct: 318 VGAAESLVTFLETPLAHPQQGEKELASNDPV--TIEAEDLEILSPDGKTLAGPLNFTLPA 375
Query: 217 -----IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 262
+VG +GAGK+SL AL + P G++ I+G+++R L + R L
Sbjct: 376 GQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHL 425
|
Length = 588 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (92), Expect = 0.004
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 476 SKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG- 534
S E L V L V + I+GR G+GKS++ + ++ P++G + +DG+D
Sbjct: 20 STEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN 79
Query: 535 LHTLRSRLTIIPQDP 549
L +R++ ++ Q+P
Sbjct: 80 LWDIRNKAGMVFQNP 94
|
Length = 280 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 0.004
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 13/115 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FS 553
+ I+G GAGKS+L AL + P G + ++GV + + L ++PQ+ L F
Sbjct: 30 LAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFP 89
Query: 554 GT----LRLNLDPVGESS----DEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
T +++ P DE I A T +S L R +S GGE
Sbjct: 90 FTVQEVVQMGRIPHRSGREPEEDERI---AAQALAATDLSGLAGRDYRTLS-GGE 140
|
Length = 259 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.004
Identities = 23/66 (34%), Positives = 36/66 (54%), Gaps = 7/66 (10%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI---- 264
R G E+ G++G GAGK++L + + P G+++ DG DI L H +RL I
Sbjct: 24 RPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPH-EIARLGIGRTF 81
Query: 265 -IPQVL 269
IP++
Sbjct: 82 QIPRLF 87
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 0.004
Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 5/51 (9%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLG---LHTLR 259
E V IVG +G+GKS+L L L ++ G ++I+G D+ L L LR
Sbjct: 32 EFVAIVGPSGSGKSTL-LNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81
|
Length = 226 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 39.2 bits (91), Expect = 0.004
Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 484 LVGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG--VDIRTLGLHTLR 539
L GL++ +++ G+VG G GKS+L + L ++ P G ++ G +D GL LR
Sbjct: 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALR 76
Query: 540 SRLTIIPQDP 549
++ + QDP
Sbjct: 77 QQVATVFQDP 86
|
Length = 271 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 38.7 bits (91), Expect = 0.004
Identities = 23/83 (27%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
G++Q + +ARA++ + +L+ DE T +D + ++++ TVL H L +
Sbjct: 141 GEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELV 200
Query: 412 IDSD-RVLVLDKGLVVEFDSPSV 433
RVL L+ G +V +S V
Sbjct: 201 NRMRHRVLALEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
VGI+G GAGKS+L + I +P G + + G
Sbjct: 56 VGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTG 88
|
Length = 249 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 25/83 (30%), Positives = 48/83 (57%), Gaps = 7/83 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDL----ETDDLIQSTIRSEFAHCTVLTIAHRL 408
G++Q + + RALL ++L++DE A++DL E ++ + + +L ++H L
Sbjct: 132 GEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERL--AREINIPILYVSHSL 189
Query: 409 NTIID-SDRVLVLDKGLVVEFDS 430
+ I+ +DRV+VL++G V F
Sbjct: 190 DEILRLADRVVVLEQGKVKAFGP 212
|
Length = 352 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.5 bits (93), Expect = 0.004
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 11/70 (15%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
V L+++ ++G+VGR GAGKS+L L +EP G + R+
Sbjct: 22 VSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGY 70
Query: 545 IPQDPVLFSG 554
+ Q+P L
Sbjct: 71 LSQEPPLDPE 80
|
Length = 530 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 38.6 bits (90), Expect = 0.004
Identities = 45/177 (25%), Positives = 79/177 (44%), Gaps = 29/177 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E++ IVG +G+GKS+L L + P G +I +G + L + ++ + Q L I
Sbjct: 36 EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKL---SSAAKAELRNQKLGFI 92
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-PLIITPFCSNLQRFYVATSRQLKR 331
+ + P F + E+V PL+I ++ SR L+
Sbjct: 93 YQFHHLLPDFTAL------------------ENVAMPLLIGK-----KKPAEINSRALEM 129
Query: 332 LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
L +V +H ++G G+RQ + +ARAL+ ++++ DE T +D D I
Sbjct: 130 LAAVGLEHRANHRPSELSG--GERQRVAIARALVNNPRLVLADEPTGNLDARNADSI 184
|
Length = 233 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| KOG0055|consensus | 1228 | 100.0 | ||
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054|consensus | 1381 | 100.0 | ||
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| KOG0058|consensus | 716 | 100.0 | ||
| KOG0054|consensus | 1381 | 100.0 | ||
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| KOG0055|consensus | 1228 | 100.0 | ||
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| KOG0056|consensus | 790 | 100.0 | ||
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0057|consensus | 591 | 100.0 | ||
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| KOG0927|consensus | 614 | 100.0 | ||
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.98 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.98 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.98 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.98 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.98 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.98 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.98 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.98 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.98 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.98 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.97 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.97 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.97 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.97 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.97 | |
| KOG0058|consensus | 716 | 99.97 | ||
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.97 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.97 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.97 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.97 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.97 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.97 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.97 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.97 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.97 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.97 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.97 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.97 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.97 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.97 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.97 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.97 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.97 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.97 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.97 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.97 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.97 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.96 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.96 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.96 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.96 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.96 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.96 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.96 | |
| KOG0062|consensus | 582 | 99.96 | ||
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.96 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.96 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.96 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.96 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.96 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.95 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.95 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.95 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.95 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.95 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.95 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.95 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.95 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.94 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.94 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.94 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.94 | |
| KOG0057|consensus | 591 | 99.94 | ||
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.94 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.94 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.93 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.93 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.93 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.93 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.93 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.93 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.92 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.92 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.92 | |
| KOG0066|consensus | 807 | 99.92 | ||
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.92 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.92 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.92 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.92 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.92 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.92 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.92 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.92 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.92 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.92 | |
| KOG0056|consensus | 790 | 99.91 | ||
| KOG0061|consensus | 613 | 99.91 | ||
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.91 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.91 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.9 | |
| KOG0059|consensus | 885 | 99.9 | ||
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.9 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.9 | |
| KOG0060|consensus | 659 | 99.9 | ||
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.89 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.89 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.89 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.89 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.88 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.88 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.88 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.88 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.88 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.87 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.87 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.87 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.87 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.87 | |
| KOG0927|consensus | 614 | 99.85 | ||
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| KOG0062|consensus | 582 | 99.85 | ||
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.84 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.84 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.83 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.83 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.83 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.83 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.82 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.82 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.82 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.82 | |
| KOG0064|consensus | 728 | 99.82 | ||
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.82 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.81 | |
| KOG0065|consensus | 1391 | 99.81 | ||
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.81 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.8 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.8 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.8 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.79 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.79 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.79 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.79 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.79 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.79 | |
| KOG0065|consensus | 1391 | 99.78 | ||
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.78 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.78 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.78 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.78 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.78 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.78 | |
| KOG0066|consensus | 807 | 99.78 | ||
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.78 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.78 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.77 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.77 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.77 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.77 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.77 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.76 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.76 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.76 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.76 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.76 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.75 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.75 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.75 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.75 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.75 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.75 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.75 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.75 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.75 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.74 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.74 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.74 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.74 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.74 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.74 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.74 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.74 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.74 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.73 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.73 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.73 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.73 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.73 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.73 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.73 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.73 | |
| KOG2355|consensus | 291 | 99.73 | ||
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.73 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.73 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.73 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.73 |
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=652.90 Aligned_cols=406 Identities=25% Similarity=0.343 Sum_probs=272.7
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH--H
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV--F 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~ 77 (602)
-..+.|...++|.++++.+++++++|||++..|++.+|+++|++.|++.+..-+..++..+...+..++ +..|. +
T Consensus 96 ~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~Ltl 175 (1228)
T KOG0055|consen 96 MRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWKLTL 175 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356889999999999999999999999999999999999999999999988777777666554433222 11121 1
Q ss_pred HHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhhhh-----hHHH-
Q psy3001 78 FYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNTLD-----NKLT- 134 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~~~-----~~~~- 134 (602)
+.....|+.++. .. .+...+..++..+ .....++...+ +..+||.+...... ..+.
T Consensus 176 v~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~-Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~~~ 254 (1228)
T KOG0055|consen 176 VMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAK-AGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGLFK 254 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222221 11 1222233333333 22233444333 23355544222110 0110
Q ss_pred -HHHH-----------HHHHHHHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 135 -LSVQ-----------QTLSQPFK---------------------ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 135 -~~~~-----------~~~~~~~~---------------------~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+..| ..++|-.. -...+....-....+..+..+..+|.+..+..+..
T Consensus 255 G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~~i 334 (1228)
T KOG0055|consen 255 GLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKPSI 334 (1228)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCCCC
Confidence 1111 11111100 00011112233455667778899999988765543
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+... .........++.++|+||.|+|+.. ++.+||||+|||||||++++|.|+|+|++|+|.+|
T Consensus 335 ~~~~-~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~id 413 (1228)
T KOG0055|consen 335 DPYS-KGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLID 413 (1228)
T ss_pred Cccc-ccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEc
Confidence 3211 1111122246789999999999642 27799999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (602)
|.|+++++...+|++||+|.|+ |++|..++..++.+.-...+ .+++. .....++..+++...+
T Consensus 414 G~di~~~~~~~lr~~iglV~Qe-----------PvlF~~tI~eNI~~G~~dat---~~~i~---~a~k~ana~~fi~~lp 476 (1228)
T KOG0055|consen 414 GEDIRNLNLKWLRSQIGLVSQE-----------PVLFATTIRENIRYGKPDAT---REEIE---EAAKAANAHDFILKLP 476 (1228)
T ss_pred CccchhcchHHHHhhcCeeeec-----------hhhhcccHHHHHhcCCCccc---HHHHH---HHHHHccHHHHHHhhH
Confidence 9999999999999999999998 55552222111111100000 01110 0112334445555555
Q ss_pred HHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
.++++ .+++.|..|| |||||||||||||+++|+||+||||||+||+++++.++++|++..+|+|.|+|+|
T Consensus 477 ~g~~T--------~vge~g~qLS--GGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaH 546 (1228)
T KOG0055|consen 477 DGYDT--------LVGERGVQLS--GGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAH 546 (1228)
T ss_pred Hhhcc--------cccCCCCCCC--hHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEee
Confidence 55544 4778888888 5999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|++++++||+|++|++|+|+|.|+|+|++..
T Consensus 547 RLStIrnaD~I~v~~~G~IvE~G~h~ELi~~ 577 (1228)
T KOG0055|consen 547 RLSTIRNADKIAVMEEGKIVEQGTHDELIAL 577 (1228)
T ss_pred ehhhhhccCEEEEEECCEEEEecCHHHHHhc
Confidence 9999999999999999999999999999854
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-65 Score=606.49 Aligned_cols=404 Identities=20% Similarity=0.272 Sum_probs=244.0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF-- 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 77 (602)
...+.+...++|.++|++++++|++||+++++|++.+|+++|++.++..+...+..++..++++++.++ +..+.+
T Consensus 122 ~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~Lal 201 (1466)
T PTZ00265 122 DVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTL 201 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 456889999999999999999999999999999999999999999998877767666666554443332 122211
Q ss_pred HHHHHHHHHHHH--HHHHHHHHHH----HHhhcccchhhhhcchh----HH-------HHHHHHHHhh----------hh
Q psy3001 78 FYGFVISLGTLF--AAKRLHEKLL----KSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT----------LD 130 (602)
Q Consensus 78 ~~~~~~~~~~~~--~~~~~~~~~~----~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~----------~~ 130 (602)
+..+.+|++.+. +..+...+.. +...+ ...+..|...| +. .++|...... ..
T Consensus 202 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~~~ 280 (1466)
T PTZ00265 202 CITCVFPLIYICGVICNKKVKINKKTSLLYNNN-TMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFME 280 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 1111111111 11111 22345555555 11 1333321110 00
Q ss_pred hH-------H-HH------HHH--------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3001 131 NK-------L-TL------SVQ--------------------QTLSQP---FKITQTLNWLVRMTSDVETNIVAVERIKE 173 (602)
Q Consensus 131 ~~-------~-~~------~~~--------------------~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~ri~~ 173 (602)
.. + .. ..| .+++.. ...+..+..+...+..++.+..+.+|+.+
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri~~ 360 (1466)
T PTZ00265 281 SLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYE 360 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 0 00 000 000000 00111122334455677889999999999
Q ss_pred HhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 174 YGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
+++.+++.+..... ...+....++|+||+|+|+.. ++++||+|+||||||||+++|+|+|+|
T Consensus 361 ii~~~~~~~~~~~~---~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 361 IINRKPLVENNDDG---KKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred HHcCCCCCCCCCCC---ccCCCCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 99876543211110 111112357777777777421 278999999999999999999999999
Q ss_pred CCceEEE-CCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeecccc-ce-----eec--------
Q psy3001 239 ADGTIII-DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQV-SL-----IFT-------- 303 (602)
Q Consensus 239 ~~G~I~i-~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~-------- 303 (602)
++|+|.+ ||.++.+++...+|++|++|+|+ |.+|..++..+..+..... .. ..+
T Consensus 438 ~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~-----------~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~ 506 (1466)
T PTZ00265 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQD-----------PLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQE 506 (1466)
T ss_pred CCCeEEEeCCcchhhCCHHHHHHhccEeccc-----------ccchhccHHHHHHhcCCCccccchhccccccccccccc
Confidence 9999999 57999999999999999999998 4444222221111110000 00 000
Q ss_pred ----------------------ccccccccc--c-ccchhHHHHHHHHH-HHHH-Hhh--cccCCcccccCCcCCCChhh
Q psy3001 304 ----------------------EDVKPLIIT--P-FCSNLQRFYVATSR-QLKR-LES--VSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 304 ----------------------~~~~~~~~~--~-~~~~~~~~~~~~~~-~~~~-l~~--~~~~~~~~~~~~~lsgs~Gq 354 (602)
....+.+.. + .....++....... .++. +.. .+.+..+++.+..+| |||
T Consensus 507 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LS--GGQ 584 (1466)
T PTZ00265 507 NKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLS--GGQ 584 (1466)
T ss_pred cccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCC--HHH
Confidence 000000000 0 00000011111000 0011 111 112233566777888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
||||+|||||+++|+|||||||||+||+.++..+.+.|++.. +++|+|+||||++++..||+|++|++|
T Consensus 585 kQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g 655 (1466)
T PTZ00265 585 KQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNR 655 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999875 479999999999999789999999986
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-63 Score=566.68 Aligned_cols=383 Identities=22% Similarity=0.311 Sum_probs=245.8
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH---------H
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVT---------I 74 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---------~ 74 (602)
..|+|+-..+-..+|+|.++++-..=....+|+++|-+++|++.+.+.... +..+....+.++..+.++ .
T Consensus 268 ~~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~ 346 (1381)
T KOG0054|consen 268 RVGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALA 346 (1381)
T ss_pred hhhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHH
Confidence 345666667777888999999888878889999999999999999987543 333444433332222211 1
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh-HHH------HHHHHHHhh--------hh------h
Q psy3001 75 TVFFYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG-RVL------SRFSSDVNT--------LD------N 131 (602)
Q Consensus 75 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~------~r~~~~~~~--------~~------~ 131 (602)
...++.+++|+-.+. ...+.+.+.++..-+ ......|...| +.. +.|.+.+.. +. .
T Consensus 347 G~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~-Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~ 425 (1381)
T KOG0054|consen 347 GVAVMVLLIPLNSFLAKKIAKFQKRLMKRKDE-RIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSA 425 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111222221111 112222222211111 22234555555 222 112111111 00 0
Q ss_pred ---HHH---------HHHHH----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 132 ---KLT---------LSVQQ----------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 132 ---~~~---------~~~~~----------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
.+. .+++. .+++...+-.|+..+-.....+.++.++++|+.+|+..++..+.
T Consensus 426 ~~~~~~~~~p~lv~~~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~ 505 (1381)
T KOG0054|consen 426 LNSFLNFFSPVLVSVVTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD 505 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 000 00000 01112223345555667777888899999999999876543322
Q ss_pred ccC-------------CCCCCCCCCC-CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VND-------------KKPKDEWPEK-GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~-------------~~~~~~~~~~-~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
... ......|... ....++|+||.+++| +.+||||+.|||||+|+.+|.|..+..+|++.++|
T Consensus 506 ~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G-~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-- 582 (1381)
T KOG0054|consen 506 SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKG-QLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-- 582 (1381)
T ss_pred ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCC-CEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC--
Confidence 111 1112234432 234899999999988 99999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH--
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-- 327 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 327 (602)
.++|+||. ||++ + .++++++.+....+.+++ ...-+
T Consensus 583 -----------siaYv~Q~-----------pWI~-------------n------gTvreNILFG~~~d~~rY-~~Vi~aC 620 (1381)
T KOG0054|consen 583 -----------SVAYVPQQ-----------PWIQ-------------N------GTVRENILFGSPYDEERY-DKVIKAC 620 (1381)
T ss_pred -----------eEEEeccc-----------cHhh-------------C------CcHHHhhhcCccccHHHH-HHHHHHc
Confidence 38999997 7776 3 334444443332222222 11111
Q ss_pred -HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH-HHHHhccccEEEE
Q psy3001 328 -QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS-TIRSEFAHCTVLT 403 (602)
Q Consensus 328 -~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~~~~tvi~ 403 (602)
..+.++. .+....+++.|.+|| |||||||+||||+++|++|++||.|.|++|.++.+++.+ .++...+++|+|+
T Consensus 621 ~L~~Dle~Lp~GD~TeIGErGinLS--GGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~IL 698 (1381)
T KOG0054|consen 621 ALKKDLEILPFGDLTEIGERGINLS--GGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVIL 698 (1381)
T ss_pred cCHhHHhhcCCCCcceecCCccCCc--HhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEE
Confidence 1122222 233456888899999 599999999999999999999999999999999887764 5555667899999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|||.++.+..||.|++|++|+|.+.|+++|++
T Consensus 699 VTHql~~L~~ad~Iivl~~G~I~~~Gty~el~ 730 (1381)
T KOG0054|consen 699 VTHQLQFLPHADQIIVLKDGKIVESGTYEELL 730 (1381)
T ss_pred EeCchhhhhhCCEEEEecCCeEecccCHHHHH
Confidence 99999999999999999999999999998877
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-62 Score=591.51 Aligned_cols=378 Identities=19% Similarity=0.261 Sum_probs=234.2
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH----HHH---
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI----TVF--- 77 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~--- 77 (602)
.+.++...++..+|+|+++++..++.+.++|++++++++|++.++.... .+..++...+.++..+.++. +..
T Consensus 368 ~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g 446 (1622)
T PLN03130 368 VGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIG 446 (1622)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677778899999999999999999999999999999999998763 33444443333322211111 000
Q ss_pred --HHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh----HHH---HHHHHHHhh-----------------h
Q psy3001 78 --FYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL---SRFSSDVNT-----------------L 129 (602)
Q Consensus 78 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---~r~~~~~~~-----------------~ 129 (602)
++.+++++..+. ...+.+.+..+...+ ....+.|...| +.+ +++.+..+. +
T Consensus 447 ~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~ 525 (1622)
T PLN03130 447 SLMLVLMFPIQTFIISKMQKLTKEGLQRTDK-RIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF 525 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 001111111111 111122222222111 12234444444 111 111110000 0
Q ss_pred hhHH----H-----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q psy3001 130 DNKL----T-----------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185 (602)
Q Consensus 130 ~~~~----~-----------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 185 (602)
...+ . ++.+.+ +.+...+..|+..+......+.++..+++|+.++++.++......
T Consensus 526 ~~~~~~~~~~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~ 605 (1622)
T PLN03130 526 NSFILNSIPVLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN 605 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC
Confidence 0000 0 011111 112233445666677788889999999999999987544321100
Q ss_pred CCCCCCCCCCCCcEEEeeeEEEE----------------ecCCceEEEEeccCCChhHHHHHHhcccCCCC-ceEEECCe
Q psy3001 186 DKKPKDEWPEKGEVEFKDYKVRY----------------REGLELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGV 248 (602)
Q Consensus 186 ~~~~~~~~~~~~~i~~~~vs~~~----------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-G~I~i~g~ 248 (602)
.. . .+..+.++|+|++|+| ++| +.++|+|+||||||||+++|.|+++|++ |+|.+
T Consensus 606 ~~-~---~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--- 677 (1622)
T PLN03130 606 PP-L---EPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVG-SLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--- 677 (1622)
T ss_pred Cc-c---cCCCCceEEEeeEEEccCCCCCceeeceeEEecCC-CEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---
Confidence 00 0 0011235555555555 444 8899999999999999999999999999 99975
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (602)
+..|+||+|+ |++| +++ +++++........ +.+...-+.
T Consensus 678 ----------~~~Iayv~Q~-----------p~Lf-------------ngT------IreNI~fg~~~d~-e~y~~vl~a 716 (1622)
T PLN03130 678 ----------RGTVAYVPQV-----------SWIF-------------NAT------VRDNILFGSPFDP-ERYERAIDV 716 (1622)
T ss_pred ----------cCeEEEEcCc-----------cccC-------------CCC------HHHHHhCCCcccH-HHHHHHHHH
Confidence 4579999998 6666 333 3333322211111 111111111
Q ss_pred ---HHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhccccEEE
Q psy3001 329 ---LKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEFAHCTVL 402 (602)
Q Consensus 329 ---~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~~~~tvi 402 (602)
.+.++. .+....+++.|.+|| |||||||+||||++++|+|+|||||||+||+++++.+. +.++...+++|+|
T Consensus 717 ~~L~~di~~LP~Gd~T~IGe~G~~LS--GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvI 794 (1622)
T PLN03130 717 TALQHDLDLLPGGDLTEIGERGVNIS--GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRV 794 (1622)
T ss_pred hCcHHHHHhCCCcccccccCCCCCCC--HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEE
Confidence 111222 233445778888888 59999999999999999999999999999999998775 4566555789999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||+++.+..||+|++|++|++++.|++++++
T Consensus 795 lVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~ 827 (1622)
T PLN03130 795 LVTNQLHFLSQVDRIILVHEGMIKEEGTYEELS 827 (1622)
T ss_pred EEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999999999999998877664
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=591.32 Aligned_cols=384 Identities=20% Similarity=0.268 Sum_probs=233.4
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH----HHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTITV----FFY- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~- 79 (602)
.+.++...++..+|+|+++++..+|++.++|++++++++|++.+++.. ..+..++...+.++..+.++... .+.
T Consensus 368 ~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~~~lg~~~l~~ 446 (1495)
T PLN03232 368 VGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLYQQLGVASLFG 446 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 455666777779999999999999999999999999999999999875 33444444333332222111110 000
Q ss_pred ----HHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHH---H-Hhh------h---
Q psy3001 80 ----GFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSS---D-VNT------L--- 129 (602)
Q Consensus 80 ----~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~---~-~~~------~--- 129 (602)
.+++++..+. ...+.+.+..+...+ ......|...| +.+ +++.. + ... .
T Consensus 447 ~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~ 525 (1495)
T PLN03232 447 SLILFLLIPLQTLIVRKMRKLTKEGLQWTDK-RVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAF 525 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111112222222111 12234444444 111 11111 0 000 0
Q ss_pred hhHHH---------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccc
Q psy3001 130 DNKLT---------------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVN 185 (602)
Q Consensus 130 ~~~~~---------------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~ 185 (602)
...+. ++.+.+ +.+...+..|+..+...+..+.++..+++|+.++++.+++.....
T Consensus 526 ~~~~~~~~~~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~ 605 (1495)
T PLN03232 526 NSFILNSIPVVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN 605 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc
Confidence 00000 011111 112334455667777888889999999999999997654321100
Q ss_pred CCCC-----------CCCCCCC-CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 186 DKKP-----------KDEWPEK-GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 186 ~~~~-----------~~~~~~~-~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
.... ...|+.. ....++|+||++++| +.++|+|+||||||||+++|.|+++|++|.+.
T Consensus 606 ~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~G-e~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~--------- 675 (1495)
T PLN03232 606 PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVG-SLVAIVGGTGEGKTSLISAMLGELSHAETSSV--------- 675 (1495)
T ss_pred CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCcccCCCEE---------
Confidence 0000 0112211 123345555555555 88999999999999999999999999998763
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKR 331 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~ 331 (602)
.+++.|+||+|+ |++| ++++ ++++......+.++...... ...+.
T Consensus 676 ---~~~~~Iayv~Q~-----------p~Lf-------------~gTI------reNI~fg~~~~~e~~~~vl~~~~L~~d 722 (1495)
T PLN03232 676 ---VIRGSVAYVPQV-----------SWIF-------------NATV------RENILFGSDFESERYWRAIDVTALQHD 722 (1495)
T ss_pred ---EecCcEEEEcCc-----------cccc-------------cccH------HHHhhcCCccCHHHHHHHHHHhCCHHH
Confidence 246789999998 6666 3333 33322211111111111110 01111
Q ss_pred Hhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHH-HHHhccccEEEEeeecc
Q psy3001 332 LES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST-IRSEFAHCTVLTIAHRL 408 (602)
Q Consensus 332 l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l 408 (602)
++. .+....+++.|.+|| |||||||+||||++++|+|+|||||||+||+++++.+.+. ++...+++|+|+|||++
T Consensus 723 i~~Lp~Gd~T~IGe~G~~LS--GGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~ 800 (1495)
T PLN03232 723 LDLLPGRDLTEIGERGVNIS--GGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQL 800 (1495)
T ss_pred HHhCCCCCCceecCCCcccC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECCh
Confidence 221 223445778888888 5999999999999999999999999999999999888654 55555789999999999
Q ss_pred cccccCCeEEEEeCceEEeecChhHHh
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+.+..||+|++|++|++++.|++++++
T Consensus 801 ~~l~~aD~Ii~L~~G~i~~~Gt~~eL~ 827 (1495)
T PLN03232 801 HFLPLMDRIILVSEGMIKEEGTFAELS 827 (1495)
T ss_pred hhHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999889999999999999998876654
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-60 Score=572.36 Aligned_cols=381 Identities=18% Similarity=0.261 Sum_probs=231.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH----HHHHH---
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV----TITVF--- 77 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~--- 77 (602)
.+.++...++..+|+|+++++..++++.++|++++++++|++.+..... .+..++...+.+++.+.. ..+..
T Consensus 385 ~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~ 463 (1522)
T TIGR00957 385 SGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYFLWLNLGPSVLAG 463 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 4678888899999999999999999999999999999999999987542 333333333322221111 11010
Q ss_pred --HHHHHHHHHHHH--HHHHHHHHHHHHhhcccchhhhhcchh-H---HH-------HHHHH----HHhh---------h
Q psy3001 78 --FYGFVISLGTLF--AAKRLHEKLLKSMLRWSPLFFDTTPVG-R---VL-------SRFSS----DVNT---------L 129 (602)
Q Consensus 78 --~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g-~---~~-------~r~~~----~~~~---------~ 129 (602)
+..+++++.... ...+.+.+..+...+ ......|...| + .+ +++.+ .... +
T Consensus 464 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~ 542 (1522)
T TIGR00957 464 VAVMVLMVPLNAVMAMKTKTYQVAHMKSKDN-RIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAV 542 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 011111111111 111222222222221 12233444443 1 11 11111 0000 0
Q ss_pred hhHHHH---------HH--------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 DNKLTL---------SV--------------QQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~~~~~~---------~~--------------~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
...... ++ +.+ +.+...+..|+..+......+.++..+++||.++++.+++.+.
T Consensus 543 ~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~ 622 (1522)
T TIGR00957 543 GTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPD 622 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 000000 00 000 1112234456677778888899999999999999976543221
Q ss_pred ccCCCC--------------CCCCCCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VNDKKP--------------KDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~~~~--------------~~~~~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
...... ...|+......++|+||++++| ++++|+|+||||||||+++|+|+++|++|+|.++|
T Consensus 623 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G-~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g-- 699 (1522)
T TIGR00957 623 SIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG-- 699 (1522)
T ss_pred cccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC--
Confidence 000000 0011111123455555555555 89999999999999999999999999999999987
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH-
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ- 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 328 (602)
.++|++|+ |+++ .+ ++++++........ +.+....+.
T Consensus 700 -----------~i~yv~Q~-----------~~l~-------------~~------Ti~eNI~~g~~~~~-~~~~~~~~~~ 737 (1522)
T TIGR00957 700 -----------SVAYVPQQ-----------AWIQ-------------ND------SLRENILFGKALNE-KYYQQVLEAC 737 (1522)
T ss_pred -----------EEEEEcCC-----------cccc-------------CC------cHHHHhhcCCccCH-HHHHHHHHHh
Confidence 58999997 4444 22 22222221111011 111111111
Q ss_pred --HHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH---hccccEE
Q psy3001 329 --LKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS---EFAHCTV 401 (602)
Q Consensus 329 --~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~---~~~~~tv 401 (602)
.+.++.. +....+++.|.++| ||||||++||||++++|++++||||||+||+.+++.+.+.+.. ..+++|+
T Consensus 738 ~l~~~l~~~~~g~~t~ig~~g~~LS--GGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tv 815 (1522)
T TIGR00957 738 ALLPDLEILPSGDRTEIGEKGVNLS--GGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTR 815 (1522)
T ss_pred CCHHHHHhcCCCCCceecCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEE
Confidence 1112211 22334677788888 5999999999999999999999999999999999999988853 3457999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+|||+++.+..||+|++|++|++++.|+++++
T Consensus 816 IlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l 848 (1522)
T TIGR00957 816 ILVTHGISYLPQVDVIIVMSGGKISEMGSYQEL 848 (1522)
T ss_pred EEEeCChhhhhhCCEEEEecCCeEEeeCCHHHH
Confidence 999999999988999999999999987765544
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-62 Score=516.66 Aligned_cols=417 Identities=25% Similarity=0.387 Sum_probs=307.1
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF 78 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~ 78 (602)
|-+.+.|+..+||..+|++++++.++|||++.+||++||+++|...+...++..+.+.+.+.+.+++.+. +.++.+.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~Lt 291 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRLT 291 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHH
Confidence 3467899999999999999999999999999999999999999999998888777777777666544332 2222211
Q ss_pred --HHHHHHHHHH---HH---HHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhh---h------
Q psy3001 79 --YGFVISLGTL---FA---AKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTL---D------ 130 (602)
Q Consensus 79 --~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~---~------ 130 (602)
..+.+|..+. ++ .+++..+..+...+ .....+|...+ |.| +||....+.. .
T Consensus 292 lv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~-a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 292 LVTLIVVPIVALVAKIYGKYLRKLSKQTQDALAR-ANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1122222221 11 12222333344444 22334444443 222 4443322210 0
Q ss_pred ------------hHH---------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 131 ------------NKL---------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 131 ------------~~~---------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+.. .++.+ .++.|..++...+..+..++..+.++..|.+|+.++++.+|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 000 11222 345566677778899999999999999999999999997765
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
.+.. . ...+ ....+.++|+||+|+|+.. +|++|||||||+||||++++|.++|+|++|+|.+
T Consensus 451 i~~~-G-~~~p-~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 451 IPLT-G-TLAP-DHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCC-C-cccc-ccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 4432 1 1111 1346889999999999642 3789999999999999999999999999999999
Q ss_pred CCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHH
Q psy3001 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT 325 (602)
Q Consensus 246 ~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (602)
||+|+++++...+|++|++|.|+ |++|..++..++.|.....+ .++++ .....++.++|+...
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QE-----------PvLFs~sI~eNI~YG~~~~t---~e~i~---~AAk~ANah~FI~~~ 590 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQE-----------PVLFSGSIRENIAYGLDNAT---DEEIE---AAAKMANAHEFITNF 590 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeecc-----------ceeecccHHHHHhcCCCCCC---HHHHH---HHHHHhChHHHHHhC
Confidence 99999999999999999999998 88885555444444332110 01111 011334445555554
Q ss_pred HHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 326 SRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 326 ~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
++++++ .+++.|..+| |||||||||||||++||.||||||+||+||.++|..++++|.+..+++|||+|+
T Consensus 591 p~gY~T--------~VGEkG~qLS--GGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIA 660 (716)
T KOG0058|consen 591 PDGYNT--------VVGEKGSQLS--GGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIA 660 (716)
T ss_pred cccccc--------ccCCcccccc--chHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEe
Confidence 444443 4788899999 499999999999999999999999999999999999999999998899999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
||+++++.||+|+|+++|+++|.|+|+|+++.+++.|+++.+++
T Consensus 661 HRLSTV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~~gly~~Lv~~q 704 (716)
T KOG0058|consen 661 HRLSTVRHADQIVVIDKGRVVEMGTHDELLSKPNGLYAKLVQRQ 704 (716)
T ss_pred hhhhHhhhccEEEEEcCCeEEecccHHHHhhCcccHHHHHHHHh
Confidence 99999999999999999999999999999999878898887654
|
|
| >KOG0054|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-60 Score=537.46 Aligned_cols=414 Identities=51% Similarity=0.778 Sum_probs=335.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (602)
+..+++++++.||+.+++++++.||+|||++|+|+|+||+++|++.+|..++..+..+++.++.++..+. ....++++
T Consensus 882 ~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fl 961 (1381)
T KOG0054|consen 882 FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFL 961 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHH
Confidence 4567899999999999999999999999999999999999999999999999999988888887766544 33445555
Q ss_pred HHHHHHHHHH-------HHHHHHHHHHHHhhcccchh--hhhcchh----HHH---HHHHHH------Hhh---------
Q psy3001 80 GFVISLGTLF-------AAKRLHEKLLKSMLRWSPLF--FDTTPVG----RVL---SRFSSD------VNT--------- 128 (602)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~--~~~~~~g----~~~---~r~~~~------~~~--------- 128 (602)
.+++|+.+++ ....+..++++...+ ++.+ +.|+..| |+| .||..+ .+.
T Consensus 962 i~~~pl~v~~~~~~~~Y~~tsReLkRLesitR-SPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a 1040 (1381)
T KOG0054|consen 962 IAIIPLGVIYYFVQRYYLATSRELKRLESITR-SPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISA 1040 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhhccc-chHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 5556655544 334566677888888 6554 8888888 444 444332 111
Q ss_pred ----------hhhHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 ----------LDNKL-----------------TLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 ----------~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+.+.+ .-.+|..++|..++...++++.+...++++.+.++|||.+|.+.|+|.
T Consensus 1041 ~RWla~Rle~ig~~~v~~~al~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~ 1120 (1381)
T KOG0054|consen 1041 NRWLAVRLELLGNLVVLIAALFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEA 1120 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCC
Confidence 11111 012556788999999999999999999999999999999999987773
Q ss_pred cccc-CCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVN-DKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~-~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+... ...++..||..|+|+|+|++.+|+++ +|.+||||++|||||||+++|.|+.+|.+|+|.||
T Consensus 1121 p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~ID 1200 (1381)
T KOG0054|consen 1121 PLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILID 1200 (1381)
T ss_pred CCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEc
Confidence 3332 23377889999999999999999875 37899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS 326 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (602)
|.|+.+++.+++|++++++||+ |++| ++++++|-+..+ ...+.+-+.+...
T Consensus 1201 gvdI~~igL~dLRsrlsIIPQd-----------PvLF-------------sGTvR~NLDPf~-----e~sD~~IW~ALe~ 1251 (1381)
T KOG0054|consen 1201 GVDISKIGLHDLRSRLSIIPQD-----------PVLF-------------SGTVRFNLDPFD-----EYSDDEIWEALER 1251 (1381)
T ss_pred CeecccccHHHHHhcCeeeCCC-----------Ccee-------------cCccccccCccc-----ccCHHHHHHHHHH
Confidence 9999999999999999999999 8888 889988854422 1122222222212
Q ss_pred HHHHHHh---hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 RQLKRLE---SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 ~~~~~l~---~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
..++..- ..+++..+.+.|+++| .||||.+||||||+++++||+|||+|+++|++|...|++.||+..+++||+.
T Consensus 1252 ~~Lk~~v~~~p~~Ld~~v~egG~N~S--vGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVlt 1329 (1381)
T KOG0054|consen 1252 CQLKDVVSSLPGGLDSEVSEGGENFS--VGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLT 1329 (1381)
T ss_pred hChHHHHhhCCcCCCceecCCCccCC--hHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEE
Confidence 2222211 2335566888999999 5999999999999999999999999999999999999999999999999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+||++++.++|||+||++|+++|+|+|.+++++++..|+...+
T Consensus 1330 IAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~ 1373 (1381)
T KOG0054|consen 1330 IAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLK 1373 (1381)
T ss_pred EeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHH
Confidence 99999999999999999999999999999999988887764443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-57 Score=547.84 Aligned_cols=119 Identities=44% Similarity=0.739 Sum_probs=116.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
++||+|++||+|||||+||||||||+++|+|+++|++|+|.+||+||++++.+++|++|+||||||++|+||||+||+|.
T Consensus 1328 ~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~ 1407 (1560)
T PTZ00243 1328 GVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPF 1407 (1560)
T ss_pred cceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 564 GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 564 ~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+|+++++||+.+++++++.++|+||||.|+++|.||
T Consensus 1408 ~~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nL 1446 (1560)
T PTZ00243 1408 LEASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNY 1446 (1560)
T ss_pred cCCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcC
Confidence 888999999999999999999999999999999999997
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-58 Score=505.13 Aligned_cols=406 Identities=29% Similarity=0.414 Sum_probs=291.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHH-HHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWI-NCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~~~~ 79 (602)
...+.|+..++-.++|+|++++|++||+++++|++++|+. |.++|+++++..+...+ ..++.++++++ +..+.+.+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L~l 297 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKLTL 297 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888999999999999999999999999999999995 99999999865554444 34444333322 12222211
Q ss_pred HHH--HHHHH---HH---HHHHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhh------------
Q psy3001 80 GFV--ISLGT---LF---AAKRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNT------------ 128 (602)
Q Consensus 80 ~~~--~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~------------ 128 (602)
..+ +++.+ +. ..++...+.++...+ ...+..|+..| +..++|.+....
T Consensus 298 i~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~-~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~~ 376 (709)
T COG2274 298 IVLAAIPLNVLITLIFQPLLRRKTRKLIEESAE-QQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKLA 376 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHH
Confidence 111 11111 11 112222233333333 33345555555 122222221000
Q ss_pred -----hhhHH-------------------HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 -----LDNKL-------------------TLSVQQTLSQ---PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 -----~~~~~-------------------~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
+...+ .+++|+++++ ...+..|+..+.+++..+++...+.+|+.++++.|+|.
T Consensus 377 ~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~ 456 (709)
T COG2274 377 LILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQ 456 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 00000 2345554443 45677889999999999999999999999999998886
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
+... .....++-.+.+.|+||+|+|.+. +|.+||||+||||||||+|++.|+|+|++|+|.+||
T Consensus 457 ~~~~--~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg 534 (709)
T COG2274 457 EGDK--TLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDG 534 (709)
T ss_pred cccc--ccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 5321 122333456899999999999653 378999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccc-------cccccccchhHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-------LIITPFCSNLQR 320 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~ 320 (602)
.|+.+++...+|+.|++|+|+ +.+| .+++.+|-...+ .+.....+..++
T Consensus 535 ~dl~~i~~~~lR~~ig~V~Q~-----------~~Lf-------------~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~ 590 (709)
T COG2274 535 VDLNDIDLASLRRQVGYVLQD-----------PFLF-------------SGSIRENIALGNPEATDEEIIEAAQLAGAHE 590 (709)
T ss_pred EeHHhcCHHHHHhheeEEccc-----------chhh-------------cCcHHHHHhcCCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999999999998 6666 444444321100 000001112222
Q ss_pred HHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 321 FYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
++...+. +.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+.+.|.+...++|
T Consensus 591 fI~~lP~--------gy~t~v~E~G~~LS--GGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T 660 (709)
T COG2274 591 FIENLPM--------GYDTPVGEGGANLS--GGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRT 660 (709)
T ss_pred HHHhccc--------ccccccccCCCCCC--HHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCe
Confidence 2222222 23345788899999 5999999999999999999999999999999999999999999999999
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+|+||||+++++.||||+||++|+|++.|+|++++.. ++.|...+.
T Consensus 661 ~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~ell~~-~g~y~~l~~ 706 (709)
T COG2274 661 VIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQ-GGLYARLYQ 706 (709)
T ss_pred EEEEEccchHhhhccEEEEccCCceeccCCHHHHHHh-cChHHHHHh
Confidence 9999999999999999999999999999999999987 666666554
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=542.83 Aligned_cols=118 Identities=42% Similarity=0.695 Sum_probs=114.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
++||+|++||+|||||+||||||||+++|+|+++ .+|+|.|||+|++.++.+.+|++|+||||||++|+||||+||+|.
T Consensus 1237 ~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~ 1315 (1490)
T TIGR01271 1237 DLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPY 1315 (1490)
T ss_pred ccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcc
Confidence 4689999999999999999999999999999997 799999999999999999999999999999999999999999998
Q ss_pred CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 564 GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 564 ~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+|+++++||+.++|++++.++|+||||+|+++|.||
T Consensus 1316 ~~~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nL 1354 (1490)
T TIGR01271 1316 EQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVL 1354 (1490)
T ss_pred cCCCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcC
Confidence 888999999999999999999999999999999999987
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=521.61 Aligned_cols=415 Identities=43% Similarity=0.653 Sum_probs=295.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..++..+..++..++.++..++. ...++...
T Consensus 978 ~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~ 1057 (1622)
T PLN03130 978 IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW 1057 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998877666666655544332221 11112111
Q ss_pred HHHHHHHHH-H------HHHHHHHHHHHhhcccc--hhhhhcchh----HHH---HHHHHHHhh----------hh----
Q psy3001 81 FVISLGTLF-A------AKRLHEKLLKSMLRWSP--LFFDTTPVG----RVL---SRFSSDVNT----------LD---- 130 (602)
Q Consensus 81 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~---~r~~~~~~~----------~~---- 130 (602)
++++++.++ . ...++.+..+...+ ++ ..+.|+..| |++ ++|.+.... ..
T Consensus 1058 ~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~-s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 1136 (1622)
T PLN03130 1058 AIMPLLVLFYGAYLYYQSTAREVKRLDSITR-SPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSN 1136 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-chHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222211 1 11111222222222 22 235666666 222 222221000 00
Q ss_pred -----------hHH---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 131 -----------NKL---------------------TLSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 131 -----------~~~---------------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
..+ ..++|.++.+...+..++.++.+....++..+.+++|+.++.+.+
T Consensus 1137 ~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~ 1216 (1622)
T PLN03130 1137 RWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLP 1216 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 000 012333444555566677778888888999999999999999877
Q ss_pred cccccc-cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWV-NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+|.+.. +...+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+|+|++|+|
T Consensus 1217 ~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I 1296 (1622)
T PLN03130 1217 SEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRI 1296 (1622)
T ss_pred CcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceE
Confidence 665321 112233457777899999999999643 37799999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
.+||+|+++++...+|++|++|||+ |.+| .++++.|-.... .. ..++...
T Consensus 1297 ~IDG~dI~~i~l~~LR~~IsiVpQd-----------p~LF-------------~GTIreNLd~~~-----~~-tdeei~~ 1346 (1622)
T PLN03130 1297 LIDGCDISKFGLMDLRKVLGIIPQA-----------PVLF-------------SGTVRFNLDPFN-----EH-NDADLWE 1346 (1622)
T ss_pred EECCEecccCCHHHHHhccEEECCC-----------Cccc-------------cccHHHHhCcCC-----CC-CHHHHHH
Confidence 9999999999999999999999998 6666 555554422210 00 1111111
Q ss_pred HHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcccc
Q psy3001 324 ATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399 (602)
Q Consensus 324 ~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 399 (602)
+..+ .+ +.+. ..+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++
T Consensus 1347 Al~~a~l~~~I~~lp~GLdt~Vge~G~nLS--gGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~ 1424 (1622)
T PLN03130 1347 SLERAHLKDVIRRNSLGLDAEVSEAGENFS--VGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSC 1424 (1622)
T ss_pred HHHHcCcHHHHHhCccccCccccCCCCCCC--HHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCC
Confidence 1111 11 1111 1234556778888899 599999999999999999999999999999999999999999988899
Q ss_pred EEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhh
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~ 450 (602)
|+|+||||++++.+||||+||++|+|+|+|+|+++++++++.|+.+.+..+
T Consensus 1425 TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1425 TMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred EEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999999999999999999876678888776544
|
|
| >KOG0055|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-54 Score=485.00 Aligned_cols=415 Identities=24% Similarity=0.338 Sum_probs=291.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV 76 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 76 (602)
|...|.+..+++|...|+++++++++|||. |. |.+.+|+.+|...++..+...+..+++.+..++..++ +..|-
T Consensus 731 f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 731 FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567889999999999999999999999994 55 9999999999999999888888777777665544332 23332
Q ss_pred H--HHHHHHHHHHHHH-H-----HHHHHHHHHHhhcccchhhhhcchh-H----------HHHHHHHHHhh-----hhhH
Q psy3001 77 F--FYGFVISLGTLFA-A-----KRLHEKLLKSMLRWSPLFFDTTPVG-R----------VLSRFSSDVNT-----LDNK 132 (602)
Q Consensus 77 ~--~~~~~~~~~~~~~-~-----~~~~~~~~~~~~~~~~~~~~~~~~g-~----------~~~r~~~~~~~-----~~~~ 132 (602)
+ +...+.|++.+.. . .....+..+...+ ......|...+ | +++.+.+.... ....
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~e-a~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~ 888 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEE-ASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRG 888 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH-HHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2222233333221 0 1111111111111 11223333332 1 22222221100 0000
Q ss_pred H----HHHHHHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 133 L----TLSVQQTLSQ------------------------------PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 133 ~----~~~~~~~~~~------------------------------~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
. ..++.+.+.+ ...-...+.....+.+++..+..|+.+|+.+++.+
T Consensus 889 ~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~ 968 (1228)
T KOG0055|consen 889 LISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRK 968 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCC
Confidence 0 0001110000 00111123344567788889999999999999987
Q ss_pred cccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+..+... +......+..|+++|+||+|+|+.. ++.+||||||||||||++.+|.++|+|++|.|
T Consensus 969 ~~i~~~~-~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 969 PTIDPDS-TSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred CCCCCCC-CCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 7443221 1111122346899999999999742 26799999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccc-cccccccccchhHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFCSNLQRFY 322 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 322 (602)
.+||+|++++++..+|+++++|.|+ |.+|..++..++.|. ... ...+++ ++ ...++.+.|+
T Consensus 1048 ~IDg~dik~lnl~~LR~~i~lVsQE-----------P~LF~~TIrENI~YG-~~~--vs~~eIi~A----ak~ANaH~FI 1109 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQE-----------PVLFNGTIRENIAYG-SEE--VSEEEIIEA----AKLANAHNFI 1109 (1228)
T ss_pred EECCcccccCCHHHHHHhcceeccC-----------chhhcccHHHHHhcc-CCC--CCHHHHHHH----HHHhhhHHHH
Confidence 9999999999999999999999998 778866555554444 111 111112 11 1445666666
Q ss_pred HHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 323 VATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 323 ~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
...++++++ .+++.|.+||| |||||||||||+++||+||+|||+||+||.++++.++++|++...|+|.|
T Consensus 1110 ~sLP~GyDT--------~vGerG~QLSG--GQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~I 1179 (1228)
T KOG0055|consen 1110 SSLPQGYDT--------RVGERGVQLSG--GQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTI 1179 (1228)
T ss_pred hcCcCcccC--------ccCcccCcCCc--hHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEE
Confidence 666666554 37888999995 99999999999999999999999999999999999999999999999999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
+|+||++++.+||.|.|+++|+|+|.|+|++++.. .+.|+++.+.
T Consensus 1180 vIAHRLSTIqnaD~I~Vi~~G~VvE~GtH~~L~~~-~G~Y~~Lv~~ 1224 (1228)
T KOG0055|consen 1180 VIAHRLSTIQNADVIAVLKNGKVVEQGTHDELLAK-RGIYFRLVQL 1224 (1228)
T ss_pred EEecchhhhhcCCEEEEEECCEEEecccHHHHHhC-CCchHHHhhh
Confidence 99999999999999999999999999999999984 7778776653
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-56 Score=466.28 Aligned_cols=370 Identities=29% Similarity=0.396 Sum_probs=273.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC----CceEEECCeecCCCChHHHh----hccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA----DGTIIIDGVDIRTLGLHTLR----SRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~----~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~ 269 (602)
...++||||...+| |++||||+|||||||++++|.|+.++. +|+|.++|.|+..++...++ +.|+++||+|
T Consensus 22 ~~~v~~vsf~v~~G-E~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p 100 (539)
T COG1123 22 VPAVRDVSFEVEPG-EILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP 100 (539)
T ss_pred eeeeecceEEecCC-cEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHHHHHhccccEEEEecCc
Confidence 35899999999999 999999999999999999999999987 89999999999998877654 6899999997
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccc--cCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSH--FGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~ 347 (602)
...+. |.+ .....+.+......... ..++..+..+.++.+++.+...+ +++.
T Consensus 101 ~~sln-----P~~------------------tIg~Qi~E~~~~h~~~~---~~ea~~~a~elL~~Vgl~~~~~~~~yPhe 154 (539)
T COG1123 101 MTSLN-----PVM------------------TIGDQIREALRLHGKGS---RAEARKRAVELLEQVGLPDPERRDRYPHQ 154 (539)
T ss_pred hhhcC-----chh------------------hHHHHHHHHHHHhcccc---HHHHHHHHHHHHHHcCCCChhhhccCCcc
Confidence 54432 111 11111111100000000 22344455666667776554444 8999
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+|| |||||+.||+||+.+|++||+||||++||+.++.+|.+.|+++. .|.++|+||||+..+.+ ||||+||++|+
T Consensus 155 LSG--G~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~ 232 (539)
T COG1123 155 LSG--GMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGE 232 (539)
T ss_pred cCc--hHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCE
Confidence 995 99999999999999999999999999999999999999999875 47999999999999999 99999999999
Q ss_pred EEeecChhHHhhcchhHHHHHHHhhhhhH-H--HHHHHh-----hhhhHHHHHHHHHHH---------hcccccccceee
Q psy3001 425 VVEFDSPSVLMKNKASIFYSMAKDAGLAW-L--AVRLET-----VGNLITFSAALLAVL---------SKETLNAGLVGL 487 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~-~--~~~~~~-----~~~~~~~~~~~~~~~---------~~~~~~~~~~~l 487 (602)
++|.|+.++++.++...|........... . ...... ........+....|. ....-.++++||
T Consensus 233 iVE~G~~~~i~~~p~hpYT~~Ll~a~p~~~~~~~~~~~~~~~~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf 312 (539)
T COG1123 233 IVETGPTEEILSNPQHPYTRGLLAAVPRLGDEKIIRLPRRGPLRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSF 312 (539)
T ss_pred EEEecCHHHHHhccCCcccHHHHhhCCCcccccccccccccccccCceeEeeeeeeeeccccccccccccceeeeeeeee
Confidence 99999999999988777765542211100 0 000000 000001111111111 112334668999
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec--CCCChhhhhccceEecCCcccc---ccchhcccC-
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI--RTLGLHTLRSRLTIIPQDPVLF---SGTLRLNLD- 561 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i--~~~~~~~lr~~i~~V~Qdp~lf---~~Tv~~nl~- 561 (602)
++++||++||||.+|||||||.++|+|+++|++|+|.++|.|. +.-.....|+++.+|+|||+-. ..||+++|.
T Consensus 313 ~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~e 392 (539)
T COG1123 313 DLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAE 392 (539)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHh
Confidence 9999999999999999999999999999999999999999772 3223456788999999999642 238887763
Q ss_pred C---CC----CCcHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 562 P---VG----ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 562 ~---~~----~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
| .. ....+.+.+.+++++|.. .+-++|++++++|-
T Consensus 393 pL~~~~~~~~~~~~~rv~~ll~~VgL~~---~~l~ryP~elSGGQ 434 (539)
T COG1123 393 PLRIHGGGSGAERRARVAELLELVGLPP---EFLDRYPHELSGGQ 434 (539)
T ss_pred HHhhhcccchHHHHHHHHHHHHHcCCCH---HHHhcCchhcCcch
Confidence 1 11 123355888999999994 45668888887763
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=514.02 Aligned_cols=413 Identities=50% Similarity=0.755 Sum_probs=295.5
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..++..+..++..++.+++.++ ....+++..
T Consensus 1030 ~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~ 1109 (1522)
T TIGR00957 1030 SIGGIQASRVLHQDLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAV 1109 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345789999999999999999999999999999999999999999999988777777776655544332 112222222
Q ss_pred HHHHHHHHH-HHH------HHHHHHHHHhhccc-chhhhhcchh----HHH---HHHHHHHhh-----------------
Q psy3001 81 FVISLGTLF-AAK------RLHEKLLKSMLRWS-PLFFDTTPVG----RVL---SRFSSDVNT----------------- 128 (602)
Q Consensus 81 ~~~~~~~~~-~~~------~~~~~~~~~~~~~~-~~~~~~~~~g----~~~---~r~~~~~~~----------------- 128 (602)
+++++...+ +.. .++.+..+...+.+ ...+.|+..| |++ ++|.+....
T Consensus 1110 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 1189 (1522)
T TIGR00957 1110 IIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANR 1189 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222221111 111 11112222222211 1346666666 333 112111000
Q ss_pred --------hhhHHH-------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q psy3001 129 --------LDNKLT-------------L---SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV 184 (602)
Q Consensus 129 --------~~~~~~-------------~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~ 184 (602)
+...+. + .++.++.+...+..++.++.+.+..++..+.+++|+.++.+.+++.+..
T Consensus 1190 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~ 1269 (1522)
T TIGR00957 1190 WLAVRLECVGNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQ 1269 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccc
Confidence 000000 0 1223445566677788889999999999999999999999876654321
Q ss_pred -cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 185 -NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 185 -~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
....+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+++|++|+|.+||+|
T Consensus 1270 ~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~d 1349 (1522)
T TIGR00957 1270 IQETAPPSGWPPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLN 1349 (1522)
T ss_pred ccCCCCCCCCCCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEE
Confidence 122233457778899999999999642 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+++++...+|+++++|||+ |++| .++++.|-+... .. ..++.+.+... .
T Consensus 1350 I~~i~~~~LR~~i~iVpQd-----------p~LF-------------~gTIr~NLdp~~-----~~-sdeei~~al~~a~ 1399 (1522)
T TIGR00957 1350 IAKIGLHDLRFKITIIPQD-----------PVLF-------------SGSLRMNLDPFS-----QY-SDEEVWWALELAH 1399 (1522)
T ss_pred ccccCHHHHHhcCeEECCC-----------Cccc-------------CccHHHHcCccc-----CC-CHHHHHHHHHHcC
Confidence 9999999999999999998 6666 555554432110 01 11111111111 1
Q ss_pred H-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 L-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
+ +.+.. .+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||++++..+++.|++..+++|+|+||
T Consensus 1400 l~~~I~~lp~GLdt~v~e~G~~LS--gGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IA 1477 (1522)
T TIGR00957 1400 LKTFVSALPDKLDHECAEGGENLS--VGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIA 1477 (1522)
T ss_pred cHHHHhhCccCCCceecCCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 1 11111 234555777888888 599999999999999999999999999999999999999999988899999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
||++++.+||||+||++|+|+|+|+|++++++ ++.|+.+.++
T Consensus 1478 HRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1478 HRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred cCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHH
Confidence 99999999999999999999999999999987 5777776654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-53 Score=508.26 Aligned_cols=416 Identities=41% Similarity=0.657 Sum_probs=290.7
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYG 80 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 80 (602)
...+.++++++|.+++++++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++. ....+...
T Consensus 975 ~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~ 1054 (1495)
T PLN03232 975 ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW 1054 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568899999999999999999999999999999999999999999998877666666654443332221 11111111
Q ss_pred HHHHHHHHH-H------HHHHHHHHHHHhhcccc--hhhhhcchh----HHH---HHHHHHH------hh----h---hh
Q psy3001 81 FVISLGTLF-A------AKRLHEKLLKSMLRWSP--LFFDTTPVG----RVL---SRFSSDV------NT----L---DN 131 (602)
Q Consensus 81 ~~~~~~~~~-~------~~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~---~r~~~~~------~~----~---~~ 131 (602)
+++++...+ . ...+..+..+...+ ++ ..+.|+..| |++ ++|.+.. +. . .+
T Consensus 1055 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~-s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1133 (1495)
T PLN03232 1055 AIMPLLILFYAAYLYYQSTSREVRRLDSVTR-SPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSN 1133 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-ChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112222111 1 11111222222222 22 125566655 222 2222110 00 0 00
Q ss_pred H-HH--------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3001 132 K-LT--------------------------------LSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETP 178 (602)
Q Consensus 132 ~-~~--------------------------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~ 178 (602)
. +. ..++.++.+...+..++.++.+.+..++..+.+++|+.++.+.+
T Consensus 1134 ~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~ 1213 (1495)
T PLN03232 1134 RWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLP 1213 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 0 00 00111222333344556677788889999999999999999877
Q ss_pred cccccc-cCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 179 QEAEWV-NDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 179 ~~~~~~-~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+|.+.. ....+...||..+.++|+||+|+|+++ +|.+||||+||||||||+++|.|+++|++|+|
T Consensus 1214 ~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I 1293 (1495)
T PLN03232 1214 SEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRI 1293 (1495)
T ss_pred ccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceE
Confidence 664421 111223346777889999999999542 37899999999999999999999999999999
Q ss_pred EECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH
Q psy3001 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323 (602)
Q Consensus 244 ~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (602)
.+||+|+++++...+|+++++|||+ |++| .++++.|-+... .. ..++...
T Consensus 1294 ~IdG~di~~i~~~~lR~~i~iVpQd-----------p~LF-------------~gTIr~NL~~~~-----~~-sdeei~~ 1343 (1495)
T PLN03232 1294 MIDDCDVAKFGLTDLRRVLSIIPQS-----------PVLF-------------SGTVRFNIDPFS-----EH-NDADLWE 1343 (1495)
T ss_pred EECCEEhhhCCHHHHHhhcEEECCC-----------Ceee-------------CccHHHHcCCCC-----CC-CHHHHHH
Confidence 9999999999999999999999998 6666 555554432210 00 1111111
Q ss_pred HHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcccc
Q psy3001 324 ATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHC 399 (602)
Q Consensus 324 ~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~ 399 (602)
+..+ .+ +.+. ..+.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+++.|++..+++
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LS--gGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~ 1421 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFS--VGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCC
Confidence 1111 11 1111 1234455778888898 599999999999999999999999999999999999999999988899
Q ss_pred EEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhhh
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~ 451 (602)
|+|+||||++++.+||||+||++|+++|+|+|+++++++++.|+.+.+..+.
T Consensus 1422 TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~~ 1473 (1495)
T PLN03232 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTGP 1473 (1495)
T ss_pred EEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhCh
Confidence 9999999999999999999999999999999999998766688887765543
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=460.68 Aligned_cols=407 Identities=20% Similarity=0.264 Sum_probs=268.4
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH--
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF-- 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-- 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++..+..++ ++.+.+.
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 168 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAGLI 168 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34678889999999999999999999999999999999999999999887666666555444333222 1222111
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------h--
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------L-- 129 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~-- 129 (602)
..+.+++..+. ..+ ....+..+...+ ....+.|...| +.+ +++.+.... .
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (588)
T PRK11174 169 LLGTAPLIPLFMALVGMGAADANRRNFLALAR-LSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMAF 247 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111221111 111 111112222222 11234444444 111 222211000 0
Q ss_pred --hh---HH-H-----------------HHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3001 130 --DN---KL-T-----------------LSVQQT------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEY 174 (602)
Q Consensus 130 --~~---~~-~-----------------~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~ 174 (602)
.. .+ . +++|.+ +.+...+..|+..+...+..++.+..+.+|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~ 327 (588)
T PRK11174 248 LSSAVLEFFASISIALVAVYFGFSYLGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLVTF 327 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00 00 0 000000 0111233456777778888899999999999999
Q ss_pred hcCCcccccccCCCCCCCCCCCCcEEEeeeEEE--------------EecCCceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 175 GETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVR--------------YREGLELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~--------------~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
++.+++.+...... .+.+..+.++|+||+|. +++| +.+||||+||||||||+++|+|+| |++
T Consensus 328 l~~~~~~~~~~~~~--~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G-~~vaIvG~SGsGKSTL~~lL~g~~-p~~ 403 (588)
T PRK11174 328 LETPLAHPQQGEKE--LASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAG-QRIALVGPSGAGKTSLLNALLGFL-PYQ 403 (588)
T ss_pred HcCCCcccCCCccc--cCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCC-CCC
Confidence 97665322111100 00011224555555554 4444 889999999999999999999999 999
Q ss_pred ceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhH
Q psy3001 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQ 319 (602)
Q Consensus 241 G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 319 (602)
|+|.+||+|+.+++...+|++|+||||+ |++| ++++..| +..... ...+
T Consensus 404 G~I~i~g~~i~~~~~~~lr~~i~~v~Q~-----------~~LF-------------~~TI~eN------I~~g~~~~~~e 453 (588)
T PRK11174 404 GSLKINGIELRELDPESWRKHLSWVGQN-----------PQLP-------------HGTLRDN------VLLGNPDASDE 453 (588)
T ss_pred cEEEECCEecccCCHHHHHhheEEecCC-----------CcCC-------------CcCHHHH------hhcCCCCCCHH
Confidence 9999999999999999999999999998 6666 4444333 111100 1111
Q ss_pred HHHHHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh
Q psy3001 320 RFYVATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 320 ~~~~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 395 (602)
+...+... .+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|+|||||||||+||+++++.+.+.+++.
T Consensus 454 ei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LS--GGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~ 531 (588)
T PRK11174 454 QLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS--VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAA 531 (588)
T ss_pred HHHHHHHHhCHHHHHHhcccccccccccCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHH
Confidence 11111110 11 11112 234455778888888 59999999999999999999999999999999999999999988
Q ss_pred ccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 396 FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 396 ~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
.+++|+|+||||++.+..||+|++|++|++++.|+|+++++. ++.|..++..
T Consensus 532 ~~~~TvIiItHrl~~i~~aD~Iivl~~G~i~e~G~~~eL~~~-~~~y~~l~~~ 583 (588)
T PRK11174 532 SRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQA-GGLFATLLAH 583 (588)
T ss_pred hCCCEEEEEecChHHHHhCCEEEEEeCCeEeecCCHHHHHhc-chHHHHHHHH
Confidence 888999999999999999999999999999999999999876 4566665543
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=457.64 Aligned_cols=406 Identities=28% Similarity=0.394 Sum_probs=279.5
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY-- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 79 (602)
.+.++..++|.++|++++++|++||+++++|++++|+++|++.++..+......+...++.+++.+. ...+.+..
T Consensus 79 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~ 158 (567)
T COG1132 79 LGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALIL 158 (567)
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4478899999999999999999999999999999999999999999887653333323333322221 11111111
Q ss_pred HHHHHHHHH---HHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhhH
Q psy3001 80 GFVISLGTL---FAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDNK 132 (602)
Q Consensus 80 ~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~~ 132 (602)
.+..++..+ .+.+ +...+..+...+ ....+.+...| +.+ +++....+. ....
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (567)
T COG1132 159 LLILPLLALVLSLLARKSRKLSRRVREALGE-LNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEAL 237 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 111112222222 12234444444 111 122110000 0000
Q ss_pred H--------------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 133 L--------------------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 133 ~--------------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
. .+++| .++.+...+..|+..+......++.+..+.+|+.++++.+++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~ 317 (567)
T COG1132 238 LAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVED 317 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccC
Confidence 0 01122 234445566678888889999999999999999999997654321
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.... .....+.++|+||+|+|+++ ++.+||||+|||||||++++|+|+|+|++|+|.+||+|+
T Consensus 318 ~~~~----~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 318 PPDP----LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred CCCC----CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 1111 12234668899999999731 378999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH--
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR-- 327 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-- 327 (602)
++++...+|++|++|||+ +++| .+++..| +..... ...++...+...
T Consensus 394 ~~i~~~~lr~~I~~V~Qd-----------~~LF-------------~~TI~~N------I~~g~~~at~eei~~a~k~a~ 443 (567)
T COG1132 394 RDISLDSLRKRIGIVSQD-----------PLLF-------------SGTIREN------IALGRPDATDEEIEEALKLAN 443 (567)
T ss_pred hhcCHHHHHHhccEEccc-----------ceee-------------cccHHHH------HhcCCCCCCHHHHHHHHHHhC
Confidence 999999999999999998 6666 3333333 111111 011111111111
Q ss_pred HHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 328 QLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 328 ~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
..+.+..+ +.+..+++.|.++| ||||||++||||++++|+|||||||||+||++++..+++.+++..+++|+++|+
T Consensus 444 ~~d~I~~lp~g~dt~vge~G~~LS--gGQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIa 521 (567)
T COG1132 444 AHEFIANLPDGYDTIVGERGVNLS--GGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIA 521 (567)
T ss_pred hHHHHHhCcccccceecCCCccCC--HHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEe
Confidence 12222233 34556778888899 599999999999999999999999999999999999999999877788999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
||++++.+||+|+||++|++++.|+|+++++. ++.|+.+++.
T Consensus 522 HRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~l~~~ 563 (567)
T COG1132 522 HRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYARLYQA 563 (567)
T ss_pred ccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHHH
Confidence 99999999999999999999999999999988 7788877654
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-51 Score=494.37 Aligned_cols=413 Identities=35% Similarity=0.550 Sum_probs=283.9
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV--TITVFFYGFV 82 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 82 (602)
.+.++++++|.++|++++++|+.||+++++|++++|+++|++.++..+...+..++..++.+++.+++ ...+++..++
T Consensus 1025 ~~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~ 1104 (1560)
T PTZ00243 1025 AMRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVAL 1104 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999999999999887776666655554433221 1112222222
Q ss_pred HHHHHHH--HHH-----HHHHHHHHHhhcc-cchhhhhcchh----HHH-------HHHHHHHhh---------------
Q psy3001 83 ISLGTLF--AAK-----RLHEKLLKSMLRW-SPLFFDTTPVG----RVL-------SRFSSDVNT--------------- 128 (602)
Q Consensus 83 ~~~~~~~--~~~-----~~~~~~~~~~~~~-~~~~~~~~~~g----~~~-------~r~~~~~~~--------------- 128 (602)
++...++ +.. .+..+......+. ....+.++..| +++ +++....+.
T Consensus 1105 i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~ 1184 (1560)
T PTZ00243 1105 VPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWL 1184 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222111 111 1111111111110 11245666665 222 222221000
Q ss_pred ------hhhHHH-----------------HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ------LDNKLT-----------------LSV---QQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ------~~~~~~-----------------~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+. .++ +.++.+...+..++.++.+.+..++..+.+++|+.++.+..++++
T Consensus 1185 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~ 1264 (1560)
T PTZ00243 1185 GVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHED 1264 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 000000 011 122334455667788888999999999999999999986432211
Q ss_pred ccc-------------------------CCCCC---CCCCCCCcEEEeeeEEEEecC--------------CceEEEEec
Q psy3001 183 WVN-------------------------DKKPK---DEWPEKGEVEFKDYKVRYREG--------------LELVGIVGR 220 (602)
Q Consensus 183 ~~~-------------------------~~~~~---~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~ 220 (602)
... ...+. ..++..+.++|+||+|+|+++ +|.+||||+
T Consensus 1265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGr 1344 (1560)
T PTZ00243 1265 MPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGR 1344 (1560)
T ss_pred cccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECC
Confidence 000 00011 112345789999999999653 377999999
Q ss_pred cCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccce
Q psy3001 221 TGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSL 300 (602)
Q Consensus 221 sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (602)
||||||||+++|.|+++|++|+|.+||+|+++++...+|+.|++|||+ |++| .+++
T Consensus 1345 TGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQd-----------p~LF-------------~gTI 1400 (1560)
T PTZ00243 1345 TGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQD-----------PVLF-------------DGTV 1400 (1560)
T ss_pred CCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCC-----------Cccc-------------cccH
Confidence 999999999999999999999999999999999999999999999998 6666 4444
Q ss_pred eecccccccccccccchhHHHHHHHHH-HH-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhC-CCeEEEec
Q psy3001 301 IFTEDVKPLIITPFCSNLQRFYVATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRK-TKILILDE 375 (602)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~-p~iliLDE 375 (602)
+.|-+... .. ..++.+.+... .+ +.+. ..+.+..+++.|.++| ||||||+||||||+++ |+||||||
T Consensus 1401 reNIdp~~-----~~-sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLS--gGQrQrLaLARALL~~~~~ILlLDE 1472 (1560)
T PTZ00243 1401 RQNVDPFL-----EA-SSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYS--VGQRQLMCMARALLKKGSGFILMDE 1472 (1560)
T ss_pred HHHhCccc-----CC-CHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCC--HHHHHHHHHHHHHhcCCCCEEEEeC
Confidence 44422110 00 11111111111 11 1111 1233445677888888 5999999999999996 89999999
Q ss_pred ccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 376 ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 376 pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
|||+||+++++.+++.|++..+++|+|+||||++++..||+|+||++|+|+++|+|++++++.++.|+.+.+..
T Consensus 1473 ATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~ 1546 (1560)
T PTZ00243 1473 ATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEAL 1546 (1560)
T ss_pred CCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999998889999999999999999999999999999999999999986677787776554
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-50 Score=417.98 Aligned_cols=412 Identities=24% Similarity=0.336 Sum_probs=289.1
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHH--HHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTI--TVF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~--~~~ 77 (602)
...+.++..+||..+++++.+++..+-.+.++|++.+.+...+++++.++...++..+.+.+.-+.+++ ++. ..+
T Consensus 65 ~~aa~~~~~~LR~~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aal 144 (559)
T COG4988 65 YRAAAKVRASLRQLVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAAL 144 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 346778889999999999999999999999999999999999999999988888887776654433222 111 112
Q ss_pred HHHH---HHHHHHHH---HHHHHHHHHHHHhhcccchhhhhcchh----HHHHH-------HHHHHhh--------hhhH
Q psy3001 78 FYGF---VISLGTLF---AAKRLHEKLLKSMLRWSPLFFDTTPVG----RVLSR-------FSSDVNT--------LDNK 132 (602)
Q Consensus 78 ~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~r-------~~~~~~~--------~~~~ 132 (602)
++.+ ++|+.++. ..++...+.+....+++..|++ ...| |+|++ +.++... +...
T Consensus 145 Illit~PlIPlfMilvg~~a~~~s~~~~~~~~~ls~~FLD-~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriA 223 (559)
T COG4988 145 ILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLD-RLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIA 223 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222 22322222 2345556667777775554444 3344 44411 1111110 1100
Q ss_pred H----------HHHHHH----------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 133 L----------TLSVQQ----------------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 133 ~----------~~~~~~----------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+ .++++. ++...-.++.|+..+...++.-..+..+.+.+..+.+.|.+
T Consensus 224 flSs~vLeffa~lsiAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~ 303 (559)
T COG4988 224 FLSSAVLEFFAYLSIALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVA 303 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCC
Confidence 0 111110 01112235567788888999999999999999999987665
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... ......+...-.+.++|++++|++| ++.+||||+||||||||+++|+|+++|++|+|.+||
T Consensus 304 ~~~~~-~~~~~~~~~~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng 382 (559)
T COG4988 304 TPGSG-EKAEVANEPPIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNG 382 (559)
T ss_pred CCCCc-cccccccCCCceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECC
Confidence 32111 1101111122334445777766553 278999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH-HH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA-TS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 326 (602)
++..+++...||+++++|+|+ |++| .++++.|-.+.. .....++..+. ..
T Consensus 383 ~~l~~l~~~~~~k~i~~v~Q~-----------p~lf-------------~gTireNi~l~~-----~~~s~e~i~~al~~ 433 (559)
T COG4988 383 IDLRDLSPEAWRKQISWVSQN-----------PYLF-------------AGTIRENILLAR-----PDASDEEIIAALDQ 433 (559)
T ss_pred ccccccCHHHHHhHeeeeCCC-----------Cccc-------------cccHHHHhhccC-----CcCCHHHHHHHHHH
Confidence 999999999999999999998 6666 445444422211 00111111111 11
Q ss_pred HHHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 327 RQLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
..+..+-. .+++..+++.|..+| |||+|||++||||++++++++|||||+|||.++|+.+.+.|.+..+++|+++|
T Consensus 434 a~l~~~v~~p~GLdt~ige~G~~LS--gGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~i 511 (559)
T COG4988 434 AGLLEFVPKPDGLDTVIGEGGAGLS--GGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVI 511 (559)
T ss_pred hcHHHhhcCCCcccchhccCCCCCC--HHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEE
Confidence 12222212 344566788888888 59999999999999999999999999999999999999999999999999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
|||++.+.++|+|++|++|++++.|+|++++++ ++.|+.+...
T Consensus 512 tHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~ 554 (559)
T COG4988 512 THRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQ 554 (559)
T ss_pred EcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHH
Confidence 999999999999999999999999999999887 6677766654
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-51 Score=460.02 Aligned_cols=401 Identities=26% Similarity=0.364 Sum_probs=267.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|++++++|++||+++++|++++|+++|++.+++.+...+..++..++.+++.+. .+.+.+.+.
T Consensus 227 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~l~l~ 306 (711)
T TIGR00958 227 YTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMV 306 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999999999999999999999999999999998877666655555444333222 111111111
Q ss_pred --HHHHHHHHH--HHHH----HHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTLF--AAKR----LHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+. ...+ ...+..+...+ ....+.+...| +.+ +++.+..+.
T Consensus 307 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 385 (711)
T TIGR00958 307 TLINLPLVFLAEKVFGKRYQLLSEELQEAVAK-ANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAYA 385 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 1111 11112222222 11233444433 111 222221110
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++.|. ++.+...+..++..+...+..++++..+.+|+.++++.+++.+
T Consensus 386 ~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 465 (711)
T TIGR00958 386 GYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP 465 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Confidence 00000 012222 2334455667788888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEec---------------CCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYRE---------------GLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~---------------~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.... ..+.+..+.++|+||+|+|+. .++.+||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 466 ~~~~---~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 542 (711)
T TIGR00958 466 LTGT---LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDG 542 (711)
T ss_pred CCCC---CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECC
Confidence 1111 011123456888888888852 1278999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (602)
+|+++++...+|++|++|+|+ |++| .++++.|-.. ... ...++......
T Consensus 543 ~~i~~~~~~~lr~~i~~v~Q~-----------~~lF-------------~gTIreNI~~------g~~~~~~e~i~~al~ 592 (711)
T TIGR00958 543 VPLVQYDHHYLHRQVALVGQE-----------PVLF-------------SGSVRENIAY------GLTDTPDEEIMAAAK 592 (711)
T ss_pred EEHHhcCHHHHHhhceEEecC-----------cccc-------------ccCHHHHHhc------CCCCCCHHHHHHHHH
Confidence 999999999999999999998 5555 3443333111 100 01111111111
Q ss_pred H-HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. .++ .+.. .+.+..+++.|.++| ||||||++||||++++|+|||||||||+||+++++.+.+ ....+++|+|
T Consensus 593 ~a~l~~~i~~lp~GldT~ige~G~~LS--GGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvI 668 (711)
T TIGR00958 593 AANAHDFIMEFPNGYDTEVGEKGSQLS--GGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVL 668 (711)
T ss_pred HcCCHHHHHhCCCccCCcccCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEE
Confidence 0 111 1111 123445677788888 599999999999999999999999999999999999988 2334679999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+||||++.+..||+|++|++|++++.|+|++++++ ++.|+
T Consensus 669 iItHrl~~i~~aD~IivL~~G~ive~Gt~~eL~~~-~~~y~ 708 (711)
T TIGR00958 669 LIAHRLSTVERADQILVLKKGSVVEMGTHKQLMED-QGCYK 708 (711)
T ss_pred EEeccHHHHHhCCEEEEEECCEEEEeeCHHHHHhC-CCchH
Confidence 99999999988999999999999999999999876 34454
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-50 Score=485.58 Aligned_cols=413 Identities=28% Similarity=0.468 Sum_probs=291.4
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP--VTITVFFY 79 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 79 (602)
+.+.+.++++++|.+++++++++|+.||+++++|++++|+++|++.++..++..+..++..++.+++.++ ....+++.
T Consensus 949 ~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~i~~~~p~l~ 1028 (1490)
T TIGR01271 949 LVHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIF 1028 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999999999999999999999999999988777777766555444332 11122222
Q ss_pred HHHHHHHHHHH-H------HHHHHHHHHHhhcccc--hhhhhcchh----HHH-------HHHHHHHhh-----------
Q psy3001 80 GFVISLGTLFA-A------KRLHEKLLKSMLRWSP--LFFDTTPVG----RVL-------SRFSSDVNT----------- 128 (602)
Q Consensus 80 ~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~--~~~~~~~~g----~~~-------~r~~~~~~~----------- 128 (602)
.++++++++++ . ..++.+..+...+ ++ ..+.++..| |++ +++....+.
T Consensus 1029 l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~-s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1107 (1490)
T TIGR01271 1029 IAAIPVAVIFIMLRAYFLRTSQQLKQLESEAR-SPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTANWFLYLST 1107 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222222111 1 1111222222222 11 235555555 222 222221110
Q ss_pred ---hh---hH----HH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LD---NK----LT---------------LSVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~---~~----~~---------------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+. .. +. ..++.++.+...+..++.++.+.+..++..+.+++|+.+|.+.+++...
T Consensus 1108 ~~wl~~~~~~i~~~~~~~~~~l~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~e~~~ 1187 (1490)
T TIGR01271 1108 LRWFQMRIDIIFVFFFIAVTFIAIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPR 1187 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccc
Confidence 00 00 00 0122334445556667778888889999999999999999987665432
Q ss_pred ccC---------------CCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhc
Q psy3001 184 VND---------------KKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 184 ~~~---------------~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
... ..++..||..+.++|+||+|+|+++ ++.+||||+||||||||+++|+|
T Consensus 1188 ~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~r 1267 (1490)
T TIGR01271 1188 PSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLR 1267 (1490)
T ss_pred ccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhh
Confidence 110 0122347777899999999999752 37799999999999999999999
Q ss_pred ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc
Q psy3001 235 IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314 (602)
Q Consensus 235 ~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (602)
+++ .+|+|.+||+|+.+++...+|+++++|||+ |++| .++++.|-+... .
T Consensus 1268 l~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQd-----------p~LF-------------~GTIR~NLdp~~-----~ 1317 (1490)
T TIGR01271 1268 LLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQK-----------VFIF-------------SGTFRKNLDPYE-----Q 1317 (1490)
T ss_pred hcC-CCcEEEECCEEcccCCHHHHHhceEEEeCC-----------CccC-------------ccCHHHHhCccc-----C
Confidence 997 799999999999999999999999999998 6666 555554432211 0
Q ss_pred cchhHHHHHHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH
Q psy3001 315 CSNLQRFYVATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390 (602)
Q Consensus 315 ~~~~~~~~~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~ 390 (602)
. ..++.+....+ .+ +.+.. .+++..+++.|.++| +|||||+||||||+++|+|||||||||+||++++..+++
T Consensus 1318 ~-tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLS--gGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~ 1394 (1490)
T TIGR01271 1318 W-SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLS--NGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRK 1394 (1490)
T ss_pred C-CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCC--HHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 01111111111 01 11111 234445677788888 599999999999999999999999999999999999999
Q ss_pred HHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 391 TIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 391 ~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
.|++..+++|||+||||++++..||+|++|++|+|+++|+|.++++. .+.|+.+.+..
T Consensus 1395 ~L~~~~~~~TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~ 1452 (1490)
T TIGR01271 1395 TLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAA 1452 (1490)
T ss_pred HHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHh
Confidence 99998889999999999999999999999999999999999999974 67777777643
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=446.13 Aligned_cols=406 Identities=20% Similarity=0.277 Sum_probs=268.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG- 80 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~- 80 (602)
.+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.++.++...+..++..++..++.++ ++.+.+.+.
T Consensus 87 ~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 166 (574)
T PRK11160 87 ATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLALTL 166 (574)
T ss_pred HHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677889999999999999999999999999999999999999999887777776665554433222 122221111
Q ss_pred -HHHHHHHH---HH----HHHHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 81 -FVISLGTL---FA----AKRLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 81 -~~~~~~~~---~~----~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
+.+++... .. .+....+..+...+ ....+.+...| +.+ +++.+..+. ..
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (574)
T PRK11160 167 GGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQ-YRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLTG 245 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH-HHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11 11111222222222 11234444444 111 222221110 00
Q ss_pred ------hHH------------------HHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL------------------TLSVQQTLSQP----FKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~------------------~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++.+.++... .....++..+...+..++.+..+.+|+.++++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~i~~~g~~~~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~~~ 325 (574)
T PRK11160 246 LSQALMILANGLTVVLMLWLAAGGVGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPEVT 325 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 000 00111111111 11123556666778888899999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
..... . ..+..+.++|+||+|+|+++ ++++||+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 326 ~~~~~-~--~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 326 FPTTS-T--AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred CCccc-C--CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11110 0 01223567788888887431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 327 (602)
++++++...+|+.++++||+ |.+| .+++..|-.. ... ...++.......
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~ti~~Ni~~------~~~~~~~~~i~~al~~ 452 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQR-----------VHLF-------------SATLRDNLLL------AAPNASDEALIEVLQQ 452 (574)
T ss_pred EhhhCCHHHHHhheeEEccc-----------chhh-------------cccHHHHhhc------CCCccCHHHHHHHHHH
Confidence 99999999999999999998 4444 3333322111 000 011111111110
Q ss_pred -HHHH-Hh-hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 -QLKR-LE-SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 -~~~~-l~-~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++. +. ..+.+..+++.|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 453 ~~l~~~i~~p~GldT~vge~g~~LS--gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviii 530 (574)
T PRK11160 453 VGLEKLLEDDKGLNAWLGEGGRQLS--GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMI 530 (574)
T ss_pred cCCHHHHcCccccCchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 1111 11 1222334566777888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+|+++++. ++.|..+++
T Consensus 531 tHr~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 531 THRLTGLEQFDRICVMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred ecChhHHHhCCEEEEEeCCeEEEeCCHHHHHhc-CcHHHHHHh
Confidence 999999988999999999999999999999876 566666543
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-51 Score=406.43 Aligned_cols=280 Identities=26% Similarity=0.418 Sum_probs=222.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecCC-------
Q psy3001 140 TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL------- 212 (602)
Q Consensus 140 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~~------- 212 (602)
+.+|.+++..|++++......+|++..-++++.+++++++|..+.....+ -...+|.++|+||+|.|+++.
T Consensus 481 f~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a~p--l~~~~G~i~fsnvtF~Y~p~k~vl~dis 558 (790)
T KOG0056|consen 481 FLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGAPP--LKVTQGKIEFSNVTFAYDPGKPVLSDIS 558 (790)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCCCC--ccccCCeEEEEEeEEecCCCCceeecce
Confidence 46778888999999999999999999999999999987766432111111 112468899999999998763
Q ss_pred ------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 213 ------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 213 ------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
+.+|+|||||+||||+++++.++++.++|.|.+||+|+++.....+|++||+|||| .++|..+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQD-----------tvLFNdT 627 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQD-----------TVLFNDT 627 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCc-----------ceeecce
Confidence 56999999999999999999999999999999999999999999999999999998 6666222
Q ss_pred cccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh
Q psy3001 287 VPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~ 366 (602)
+..++.+.-... -|+++.+ ....+.+++.+...+++.+ ..+++.|..+| |||||||||||++++
T Consensus 628 I~yNIryak~~A---sneevya---AAkAA~IHdrIl~fPegY~--------t~VGERGLkLS--GGEKQRVAiARtiLK 691 (790)
T KOG0056|consen 628 ILYNIRYAKPSA---SNEEVYA---AAKAAQIHDRILQFPEGYN--------TRVGERGLKLS--GGEKQRVAIARTILK 691 (790)
T ss_pred eeeheeecCCCC---ChHHHHH---HHHHhhHHHHHhcCchhhh--------hhhhhcccccC--CcchhhHHHHHHHhc
Confidence 222111111100 0011100 0011222222222232222 34788888888 599999999999999
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
+|.|++|||+||+||..+++.|+..|.+...++|-|+|+||++++-+||.|+++++|+|+|.|.|+|++...++.|..++
T Consensus 692 ~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya~MW 771 (790)
T KOG0056|consen 692 APSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYADMW 771 (790)
T ss_pred CCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999988
Q ss_pred Hh
Q psy3001 447 KD 448 (602)
Q Consensus 447 ~~ 448 (602)
+.
T Consensus 772 q~ 773 (790)
T KOG0056|consen 772 QA 773 (790)
T ss_pred HH
Confidence 53
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=456.57 Aligned_cols=407 Identities=23% Similarity=0.324 Sum_probs=269.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHH-HHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVL-YLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|++ |+..+.+++.......+..+...+ .+++ +..+.+.+.
T Consensus 222 ~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 300 (708)
T TIGR01193 222 VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLLFLL 300 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 457788999999999999999999999999999999998 899998877554444333322222 1111 111111111
Q ss_pred --HHHHHHHH--HHHH----HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTL--FAAK----RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+ .... +...+..+...+ ....+.|...| +.+ +++.+....
T Consensus 301 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 379 (708)
T TIGR01193 301 SLLSIPVYAVIIILFKRTFNKLNHDAMQANAV-LNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKADQ 379 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 111111222111 11223333333 111 222110000
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.+ ..+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 380 ~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 459 (708)
T TIGR01193 380 GQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSEFI 459 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00000 1123332 223445667888888999999999999999999998766543
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.... .....+..+.++|+||+|+|+++ ++.+||+|+||||||||+++|+|+|+|++|+|.+||+|
T Consensus 460 ~~~~--~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~ 537 (708)
T TIGR01193 460 NKKK--RTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFS 537 (708)
T ss_pred cccc--ccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEE
Confidence 2111 01112234578888888888532 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+++++...+|+.++||||+ |++| .+++..|-.... ......++....... .
T Consensus 538 i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTI~eNi~l~~----~~~~~~~~i~~a~~~a~ 589 (708)
T TIGR01193 538 LKDIDRHTLRQFINYLPQE-----------PYIF-------------SGSILENLLLGA----KENVSQDEIWAACEIAE 589 (708)
T ss_pred HHHcCHHHHHHheEEEecC-----------ceeh-------------hHHHHHHHhccC----CCCCCHHHHHHHHHHhC
Confidence 9999999999999999998 5565 444433321110 000111111111110 1
Q ss_pred H-HHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 L-KRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~-~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
+ +.+. ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++. +++|+|+||
T Consensus 590 l~~~i~~lp~gldt~i~e~G~~LS--gGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~Iiit 666 (708)
T TIGR01193 590 IKDDIENMPLGYQTELSEEGSSIS--GGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVA 666 (708)
T ss_pred CHHHHHhcccccCcEecCCCCCCC--HHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEe
Confidence 1 1111 1233445677788888 59999999999999999999999999999999999999999875 579999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||++.+..||+|++|++|++++.|+|+++++. .+.|..++
T Consensus 667 Hr~~~~~~~D~i~~l~~G~i~~~G~~~~L~~~-~~~y~~l~ 706 (708)
T TIGR01193 667 HRLSVAKQSDKIIVLDHGKIIEQGSHDELLDR-NGFYASLI 706 (708)
T ss_pred cchHHHHcCCEEEEEECCEEEEECCHHHHHhc-CCcHHHHh
Confidence 99999988999999999999999999999876 45565543
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-50 Score=453.36 Aligned_cols=403 Identities=26% Similarity=0.309 Sum_probs=267.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHH-HHHHHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCL-FSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|++ |++.+++.+...+...+..+ +.++.+++ +..+.+.+.
T Consensus 202 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 280 (686)
T TIGR03797 202 RLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKLALV 280 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999997 79999887755444433332 22222111 111111111
Q ss_pred H--HHHHHHH--HHHH----HHHHHHHHHhhcccchhhhhcchh----H-------HHHHHHHHHhh-------------
Q psy3001 81 F--VISLGTL--FAAK----RLHEKLLKSMLRWSPLFFDTTPVG----R-------VLSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~--~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~~~~~g----~-------~~~r~~~~~~~------------- 128 (602)
. ++++..+ .... +...+..+...+ ....+.|...| + ..++|.+....
T Consensus 281 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 359 (686)
T TIGR03797 281 AVALALVAIAVTLVLGLLQVRKERRLLELSGK-ISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRIEN 359 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 1111 111122222222 12233344433 1 11222221000
Q ss_pred ----hhhHH-------------------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQTL---SQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.++ .+...+..|+..+...+..++....+++|+.++++.+++.+
T Consensus 360 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 439 (686)
T TIGR03797 360 LLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPEVD 439 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 00000 01233222 23445667788888999999999999999999998765532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
... .. ..+..+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+|+|++|+|.+||+
T Consensus 440 ~~~--~~--~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 515 (686)
T TIGR03797 440 EAK--TD--PGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQ 515 (686)
T ss_pred cCc--CC--CCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCE
Confidence 111 00 11123567888888888431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
|++++++..+|+++++|||+ +.+| .+++..| +........++.......
T Consensus 516 ~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTI~eN------i~~~~~~~~e~i~~al~~a 565 (686)
T TIGR03797 516 DLAGLDVQAVRRQLGVVLQN-----------GRLM-------------SGSIFEN------IAGGAPLTLDEAWEAARMA 565 (686)
T ss_pred EcCcCCHHHHHhccEEEccC-----------CccC-------------cccHHHH------HhcCCCCCHHHHHHHHHHc
Confidence 99999999999999999998 5555 3433332 111110111111111111
Q ss_pred HHH-HHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+. ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++. ++|+|+|
T Consensus 566 ~l~~~i~~lp~G~dt~ige~G~~LS--GGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiI 641 (686)
T TIGR03797 566 GLAEDIRAMPMGMHTVISEGGGTLS--GGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVI 641 (686)
T ss_pred CcHHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEE
Confidence 111 111 1233445677788888 59999999999999999999999999999999999999999876 5799999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+|+++++. ++.|+.++.
T Consensus 642 tHr~~~i~~~D~Iivl~~G~iv~~G~~~~Ll~~-~~~y~~l~~ 683 (686)
T TIGR03797 642 AHRLSTIRNADRIYVLDAGRVVQQGTYDELMAR-EGLFAQLAR 683 (686)
T ss_pred ecChHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 999999999999999999999999999999876 566665543
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-50 Score=457.41 Aligned_cols=406 Identities=22% Similarity=0.268 Sum_probs=268.6
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++| ..+.+++...+..++..++.++..++ ++.+.+.+.
T Consensus 220 ~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 298 (710)
T TIGR03796 220 RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVLTLI 298 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999999999999999999987 67888776555444444433332221 111111111
Q ss_pred HH--HHHHHH--HHHHHHHH----HHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhh-------------
Q psy3001 81 FV--ISLGTL--FAAKRLHE----KLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~~--~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~------------- 128 (602)
.+ +++..+ ....+... +..+...+ ....+.+...| ...+++.+....
T Consensus 299 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (710)
T TIGR03796 299 GIAFAAINVLALQLVSRRRVDANRRLQQDAGK-LTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVLTQ 377 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11 111111 11111111 11111111 11123333333 111222210000
Q ss_pred ----hhhHH-------------------HHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQTL---SQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.++ .+...+..|+..+...+..+++...+++|+.++++.+++.+
T Consensus 378 ~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 457 (710)
T TIGR03796 378 ILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPL 457 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 00000 01233322 23445667788888999999999999999999998766543
Q ss_pred cccC---CCCCCC-CCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 183 WVND---KKPKDE-WPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 183 ~~~~---~~~~~~-~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
.... ...... .+..+.++|+||+|+|++. ++.+||||+||||||||+|+|+|+|+|++|+|.
T Consensus 458 ~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~ 537 (710)
T TIGR03796 458 LEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537 (710)
T ss_pred cccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 2110 000001 1224578899999988642 378999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH
Q psy3001 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324 (602)
Q Consensus 245 i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
+||.|+.+++...+|+.++||||+ +++| .++++.|-... ......++....
T Consensus 538 idg~~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~gTi~eNi~l~-----~~~~~~~~i~~a 588 (710)
T TIGR03796 538 FDGIPREEIPREVLANSVAMVDQD-----------IFLF-------------EGTVRDNLTLW-----DPTIPDADLVRA 588 (710)
T ss_pred ECCEeHHHCCHHHHHhheeEEecC-----------Chhh-------------hccHHHHhhCC-----CCCCCHHHHHHH
Confidence 999999999999999999999998 5555 33433321110 000111111111
Q ss_pred HHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 325 TSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 325 ~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
... .+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++ .++|
T Consensus 589 l~~~~l~~~i~~lp~gl~t~i~e~G~~LS--GGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T 664 (710)
T TIGR03796 589 CKDAAIHDVITSRPGGYDAELAEGGANLS--GGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCT 664 (710)
T ss_pred HHHhCCHHHHHhCcCcccceeccCCCCCC--HHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCE
Confidence 111 11 11111 233455777888888 5999999999999999999999999999999999999999986 4799
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHH
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 445 (602)
+|+||||++.+..||+|++|++|++++.|+|+++++. ++.|+.+
T Consensus 665 ~IiitHrl~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~-~~~y~~l 708 (710)
T TIGR03796 665 CIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAV-GGAYARL 708 (710)
T ss_pred EEEEecCHHHHHhCCEEEEEeCCEEEEecCHHHHHHc-CCcHHHH
Confidence 9999999999999999999999999999999999876 4555543
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=479.47 Aligned_cols=410 Identities=22% Similarity=0.307 Sum_probs=271.6
Q ss_pred cchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 77 (602)
...+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++ ++.+.+
T Consensus 891 ~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l 970 (1466)
T PTZ00265 891 NVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIV 970 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999999986 8899999999999999999877666666665554443322 122211
Q ss_pred HHH--HHHHHHHHHHHHHHHHH---HHH-H-----------------hhcccchhhhhcchh----HHH-------HHHH
Q psy3001 78 FYG--FVISLGTLFAAKRLHEK---LLK-S-----------------MLRWSPLFFDTTPVG----RVL-------SRFS 123 (602)
Q Consensus 78 ~~~--~~~~~~~~~~~~~~~~~---~~~-~-----------------~~~~~~~~~~~~~~g----~~~-------~r~~ 123 (602)
.+. ++++++......+.+.. ..+ . ..+ ....+.|...| +.+ ++|.
T Consensus 971 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~tVka~~~e~~~~~~~~ 1049 (1466)
T PTZ00265 971 AAVLTGTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKD-PSFLIQEAFYNMNTVIIYGLEDYFCNLIE 1049 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHH-HHHHHHHHHhcHHHHHHhcchHHHHHHHH
Confidence 111 11111111111111110 000 0 000 11234444444 111 2222
Q ss_pred HHHhh-----------------hhhHH-------------------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Q psy3001 124 SDVNT-----------------LDNKL-------------------TLSVQQTLSQP---FKITQTLNWLVRMTSDVETN 164 (602)
Q Consensus 124 ~~~~~-----------------~~~~~-------------------~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~ 164 (602)
+.... +...+ .++++.++... .....++..+...+..++.+
T Consensus 1050 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a 1129 (1466)
T PTZ00265 1050 KAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENA 1129 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21100 00000 01122222111 11113455667788889999
Q ss_pred HHHHHHHHHHhcCCcccccccCCCCCC--CCCCCCcEEEeeeEEEEec--C-------------CceEEEEeccCCChhH
Q psy3001 165 IVAVERIKEYGETPQEAEWVNDKKPKD--EWPEKGEVEFKDYKVRYRE--G-------------LELVGIVGRTGAGKSS 227 (602)
Q Consensus 165 ~~~~~ri~~~~~~~~~~~~~~~~~~~~--~~~~~~~i~~~~vs~~~~~--~-------------~e~~~lvG~sGsGKST 227 (602)
..+.+|+.++++.+++.+......... .....+.++|+||+|+|+. + ++++||||+|||||||
T Consensus 1130 ~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKST 1209 (1466)
T PTZ00265 1130 KLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKST 1209 (1466)
T ss_pred HHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHH
Confidence 999999999998755322111110000 1112467999999999952 1 2679999999999999
Q ss_pred HHHHHhcccCC------------------------------------------------------CCceEEECCeecCCC
Q psy3001 228 LTLALFRIIEP------------------------------------------------------ADGTIIIDGVDIRTL 253 (602)
Q Consensus 228 L~~ll~g~~~~------------------------------------------------------~~G~I~i~g~~~~~~ 253 (602)
|+++|.|+|+| ++|+|.+||+|++++
T Consensus 1210 l~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~ 1289 (1466)
T PTZ00265 1210 VMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDY 1289 (1466)
T ss_pred HHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhC
Confidence 99999999998 699999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccc-c------cccccccchhHHHHHHHH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK-P------LIITPFCSNLQRFYVATS 326 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~~~ 326 (602)
+...+|++|+||+|+ |.+| .++++.|-... . .......+++++++...+
T Consensus 1290 ~~~~lR~~i~~V~Qe-----------p~LF-------------~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP 1345 (1466)
T PTZ00265 1290 NLKDLRNLFSIVSQE-----------PMLF-------------NMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLP 1345 (1466)
T ss_pred CHHHHHhhccEeCCC-----------Cccc-------------cccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCc
Confidence 999999999999998 6666 44433331110 0 000001111222222222
Q ss_pred HHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEe
Q psy3001 327 RQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~i 404 (602)
. +.+..+++.|.+|| |||||||||||||+++|+|||||||||+||+++++.+++.|++.. +++|+|+|
T Consensus 1346 ~--------GydT~VGe~G~~LS--GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiI 1415 (1466)
T PTZ00265 1346 N--------KYDTNVGPYGKSLS--GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITI 1415 (1466)
T ss_pred c--------ccCCccCCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 2 23445778888888 599999999999999999999999999999999999999999874 58999999
Q ss_pred eecccccccCCeEEEEeC----ceEE-eecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDK----GLVV-EFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~----G~i~-~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++++..||+|+||++ |+++ +.|+|+++++..++.|+.+++
T Consensus 1416 aHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~ 1463 (1466)
T PTZ00265 1416 AHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463 (1466)
T ss_pred echHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHh
Confidence 999999999999999999 8955 899999999754677777664
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-51 Score=450.40 Aligned_cols=354 Identities=20% Similarity=0.252 Sum_probs=246.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+.... ++.++|++|++..
T Consensus 18 ~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~----- 91 (510)
T PRK09700 18 VHALKSVNLTVYPG-EIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIGIIYQELSV----- 91 (510)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeEEEeecccc-----
Confidence 35799999999998 9999999999999999999999999999999999999987776543 4679999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-----cchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-----CSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
+. ..+ +.+++.... ..... .......+..+.++.++..........++|
T Consensus 92 ------~~------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS 147 (510)
T PRK09700 92 ------ID------------ELT------VLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLS 147 (510)
T ss_pred ------cC------------CCc------HHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCC
Confidence 10 000 000000000 00000 000011122233334444444455556777
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||++||+++.+.. ||++++|++|+++.
T Consensus 148 --gG~~qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~ 225 (510)
T PRK09700 148 --ISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVC 225 (510)
T ss_pred --HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEee
Confidence 699999999999999999999999999999999999999998864 47899999999999987 99999999999999
Q ss_pred ecChhHHhhcchhHHHHHHHhhhh-hHH--HHH-HHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCC
Q psy3001 428 FDSPSVLMKNKASIFYSMAKDAGL-AWL--AVR-LETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTG 502 (602)
Q Consensus 428 ~g~~~~l~~~~~~~~~~~~~~~~~-~~~--~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nG 502 (602)
.|+++++... ............ ... ... ...... .+.+.+....+ . ..++++||++++||++||+|+||
T Consensus 226 ~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~--~~l~~isl~i~~Ge~~~l~G~NG 299 (510)
T PRK09700 226 SGMVSDVSND--DIVRLMVGRELQNRFNAMKENVSNLAHETVFEVRNVTSRD--R--KKVRDISFSVCRGEILGFAGLVG 299 (510)
T ss_pred ecchhhCCHH--HHHHHhcCCCccccccccccccccCCCCcEEEEeCccccC--C--CcccceeEEEcCCcEEEEECCCC
Confidence 8888776432 111111000000 000 000 000000 01111111111 1 13567999999999999999999
Q ss_pred CChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCc---ccccc-chhcccCCCCC------------
Q psy3001 503 AGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFSG-TLRLNLDPVGE------------ 565 (602)
Q Consensus 503 sGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~~-Tv~~nl~~~~~------------ 565 (602)
||||||+++|+|+++|++|+|.++|+++...+. ..++++++||||++ .+|.. ||++|+.....
T Consensus 300 sGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~ 379 (510)
T PRK09700 300 SGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGL 379 (510)
T ss_pred CCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccc
Confidence 999999999999999999999999998865543 35677899999985 46654 99999853210
Q ss_pred --C--cHHHHHHHHHHcCCC-cccccccc
Q psy3001 566 --S--SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 566 --~--~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
. ..+++.++++.+++. +..++.|.
T Consensus 380 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 380 FHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred cChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 0 123478899999996 55555544
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=449.62 Aligned_cols=350 Identities=19% Similarity=0.249 Sum_probs=243.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+... .++.++|++|++....
T Consensus 17 ~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 92 (501)
T PRK10762 17 VKALSGAALNVYPG-RVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGIIHQELNLIP--- 92 (501)
T ss_pred eEEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEEcchhccC---
Confidence 45799999999998 999999999999999999999999999999999999987655444 3568999999742110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-----cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-----CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. .++.+++.... ..... ......+..+.++.++...........+|
T Consensus 93 --------------------~------~tv~e~l~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS-- 143 (501)
T PRK10762 93 --------------------Q------LTIAENIFLGREFVNRFGRID-WKKMYAEADKLLARLNLRFSSDKLVGELS-- 143 (501)
T ss_pred --------------------C------CcHHHHhhhccccccccCccC-HHHHHHHHHHHHHHcCCCCCccCchhhCC--
Confidence 0 00111000000 00000 00011122233334444444445556777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.++++. .+.|||++||+++.+.. ||++++|++|+++..+
T Consensus 144 gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 144 IGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 699999999999999999999999999999999999999998864 46899999999999987 9999999999999988
Q ss_pred ChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHH
Q psy3001 430 SPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSL 508 (602)
Q Consensus 430 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTL 508 (602)
+.+++... ...............+....+... .+.+.... . ..++++||++++||++||+|+||||||||
T Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----~--~~l~~vsl~i~~Ge~~~liG~NGsGKSTL 294 (501)
T PRK10762 224 EVADLTED--SLIEMMVGRKLEDQYPRLDKAPGEVRLKVDNLS-----G--PGVNDVSFTLRKGEILGVSGLMGAGRTEL 294 (501)
T ss_pred CcCcCCHH--HHHHHhcCCCccccccccccCCCCcEEEEeCcc-----c--CCcccceEEEcCCcEEEEecCCCCCHHHH
Confidence 87665321 100000000000000000000000 01111100 0 12467999999999999999999999999
Q ss_pred HHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCCC-----C----C----cHHH
Q psy3001 509 TLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPVG-----E----S----SDEA 570 (602)
Q Consensus 509 l~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~~-----~----~----~~~~ 570 (602)
+++|+|+++|++|+|.++|+++...+. +.+|++++||||+| .+|. .||++|+.... . . .+++
T Consensus 295 l~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~ 374 (501)
T PRK10762 295 MKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQA 374 (501)
T ss_pred HHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHH
Confidence 999999999999999999999876654 34567899999997 3554 59999985310 0 1 1345
Q ss_pred HHHHHHHcCCC-cccccccc
Q psy3001 571 IWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~-~~~~~~~~ 589 (602)
+.++++.+++. +..++.+.
T Consensus 375 ~~~~l~~~~l~~~~~~~~~~ 394 (501)
T PRK10762 375 VSDFIRLFNIKTPSMEQAIG 394 (501)
T ss_pred HHHHHHhcCCCCCCccCchh
Confidence 88899999994 45554444
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=449.93 Aligned_cols=398 Identities=22% Similarity=0.302 Sum_probs=265.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHH-HHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSV-LYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|..+|+|++++|++| +++++|++++|+ +|++.+++++...+...+..++.+ +.+++ ++.+.+.+.
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 290 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLVWV 290 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 4577889999999999999999998 788999999999 799999988765443333322222 21111 111111111
Q ss_pred H--HHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhh-------------
Q psy3001 81 F--VISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT------------- 128 (602)
Q Consensus 81 ~--~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~------------- 128 (602)
. .+++.. ....+ +...+..+...+ ....+.|...| +. .+++.+....
T Consensus 291 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (694)
T TIGR03375 291 PLVAIPLILLPGLLLQRPLSRLAEESMRESAQ-RNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLSN 369 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 111111 11111 111122222222 12234444444 11 1222221100
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|.+ +.+...+..|+..+...+..+++...+.+|+.++++.+++.+
T Consensus 370 ~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~~ 449 (694)
T TIGR03375 370 LATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVERP 449 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 00000 0123322 233445667888888999999999999999999998766532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... .....+..+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+|+|++|+|.+||+
T Consensus 450 ~~~~--~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~ 527 (694)
T TIGR03375 450 EGTR--FLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGV 527 (694)
T ss_pred CCCC--CCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 1111 00011123568888998888531 3789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
|+++++...+|+.+++|||+ +++| .+++..|-.... .....++.......
T Consensus 528 ~l~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~~TI~eNi~~~~-----~~~~~~~i~~a~~~~ 578 (694)
T TIGR03375 528 DIRQIDPADLRRNIGYVPQD-----------PRLF-------------YGTLRDNIALGA-----PYADDEEILRAAELA 578 (694)
T ss_pred EhhhCCHHHHHhccEEECCC-----------hhhh-------------hhhHHHHHhCCC-----CCCCHHHHHHHHHHc
Confidence 99999999999999999998 5555 334333321100 00111111111110
Q ss_pred -HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 -QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 -~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
..+.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 579 ~l~~~i~~lp~gl~T~i~e~G~~LS--gGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiI 656 (694)
T TIGR03375 579 GVTEFVRRHPDGLDMQIGERGRSLS--GGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLV 656 (694)
T ss_pred ChHHHHHhCcccccceecCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 1111111 233445677888888 59999999999999999999999999999999999999999988888999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|||++.+..||+|++|++|++++.|+|+++++.
T Consensus 657 tHrl~~~~~~D~iivl~~G~i~e~G~~~eLl~~ 689 (694)
T TIGR03375 657 THRTSLLDLVDRIIVMDNGRIVADGPKDQVLEA 689 (694)
T ss_pred ecCHHHHHhCCEEEEEeCCEEEeeCCHHHHHHH
Confidence 999999988999999999999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-49 Score=437.62 Aligned_cols=407 Identities=24% Similarity=0.314 Sum_probs=272.6
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF 81 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (602)
.+.++...+|..+|+++++.|.++|+++++|++++|+++|++.+...+...+..++..++.++..++ ++.+.+.+..
T Consensus 92 ~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 171 (582)
T PRK11176 92 VSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLIL 171 (582)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667888999999999999999999999999999999999999998776666555554444433222 1111111111
Q ss_pred --HHHHHHHH--HHHHH----HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh--------------
Q psy3001 82 --VISLGTLF--AAKRL----HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT-------------- 128 (602)
Q Consensus 82 --~~~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~-------------- 128 (602)
.+++..+. ...+. ..+..+...+ ....+.+...| +.+ +++....+.
T Consensus 172 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 172 IVIAPIVSIAIRVVSKRFRNISKNMQNTMGQ-VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111 1111111111 11123333333 111 222221000
Q ss_pred ---hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+...+ .++++. ++.+...+..|+..+...+..++....+.+|+.++.+.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 00000 012222 23344456678888889999999999999999999876544221
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.... ..+..+.++|+||+|+|+++ ++++||+|+||||||||+++|+|+++|++|+|.+||++
T Consensus 331 ~~~~----~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 331 GKRV----IERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CCcC----CCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 1000 11223468888888888542 27899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-H
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-Q 328 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 328 (602)
+.+++...+++.++|+||+ +.+| .+++..|-.... +.....++....... .
T Consensus 407 i~~~~~~~~~~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~~~~~~i~~al~~~~ 458 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQN-----------VHLF-------------NDTIANNIAYAR----TEQYSREQIEEAARMAY 458 (582)
T ss_pred hhhcCHHHHHhhceEEccC-----------ceee-------------cchHHHHHhcCC----CCCCCHHHHHHHHHHhC
Confidence 9999999999999999998 5555 333332211100 000011111111111 1
Q ss_pred HH-HHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 329 LK-RLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 329 ~~-~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
++ .++ ..+.+..+++.|.++| ||||||++|||||+++|++||||||||+||++++..+.+.+++..+++|+|+||
T Consensus 459 l~~~i~~lp~Gldt~ig~~g~~LS--GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~Vt 536 (582)
T PRK11176 459 AMDFINKMDNGLDTVIGENGVLLS--GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIA 536 (582)
T ss_pred cHHHHHhcccccCceeCCCCCcCC--HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 11 111 1233445677788888 599999999999999999999999999999999999999999887789999999
Q ss_pred ecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 406 H~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||++.+..||+|++|++|++++.|+++++++. ++.|+.++.
T Consensus 537 Hr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~~~-~~~y~~l~~ 577 (582)
T PRK11176 537 HRLSTIEKADEILVVEDGEIVERGTHAELLAQ-NGVYAQLHK 577 (582)
T ss_pred cchHHHHhCCEEEEEECCEEEEeCCHHHHHhC-CChHHHHHH
Confidence 99999989999999999999999999999876 455665543
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-49 Score=438.46 Aligned_cols=404 Identities=25% Similarity=0.347 Sum_probs=269.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHH--H
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFF--Y 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~--~ 79 (602)
.+.++..++|.++|++++++|.++|+++++|++++|+++|++.++..+...+..++..+..++..+. ++.+.+. .
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~ 171 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMALVA 171 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778999999999999999999999999999999999999999877666655555444333222 1111111 1
Q ss_pred HHHHHHHHH--HHHHHHHHH----HHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhh-
Q psy3001 80 GFVISLGTL--FAAKRLHEK----LLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDN- 131 (602)
Q Consensus 80 ~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~- 131 (602)
.+.+++..+ ........+ ..+...+ ....+.+...| +.+ +++.+..+. ...
T Consensus 172 l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (592)
T PRK10790 172 IMIFPAVLVVMVIYQRYSTPIVRRVRAYLAD-INDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDGF 250 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 111111111 1111111 11123333333 111 111110000 000
Q ss_pred -------HHH------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 132 -------KLT------------------LSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 132 -------~~~------------------~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
.+. ++++.+ +.+...+..|+..+...+..+++...+.+|+.++++.++++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~~ 330 (592)
T PRK10790 251 LLRPLLSLFSALILCGLLMLFGFSASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQYG 330 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCC
Confidence 000 011111 2223345667788888899999999999999999876543211
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
. .. .....+.++|+|++|+|+++ ++.+||+|+||||||||+++|+|+++|++|+|.+||.++
T Consensus 331 ~-~~----~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i 405 (592)
T PRK10790 331 N-DD----RPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPL 405 (592)
T ss_pred C-Cc----cCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEh
Confidence 1 10 11123467888888887531 278999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-HHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS-RQL 329 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (602)
.++++..+|++|+|+||+ |.+| .+++..|-.. .......+...... ..+
T Consensus 406 ~~~~~~~l~~~i~~v~Q~-----------~~lF-------------~~Ti~~NI~~------~~~~~d~~i~~a~~~~gl 455 (592)
T PRK10790 406 SSLSHSVLRQGVAMVQQD-----------PVVL-------------ADTFLANVTL------GRDISEEQVWQALETVQL 455 (592)
T ss_pred hhCCHHHHHhheEEEccC-----------Cccc-------------cchHHHHHHh------CCCCCHHHHHHHHHHcCc
Confidence 999999999999999998 5555 4443333211 11001111111100 011
Q ss_pred -HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 330 -KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 330 -~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
+.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|||
T Consensus 456 ~~~i~~lp~Gldt~i~e~g~~LS--GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtH 533 (592)
T PRK10790 456 AELARSLPDGLYTPLGEQGNNLS--VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAH 533 (592)
T ss_pred HHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEec
Confidence 11111 133445677788888 5999999999999999999999999999999999999999998877899999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|++.+..||+|++|++|++++.|+|+++++. ++.|+.+..
T Consensus 534 r~~~l~~~D~ii~l~~G~i~~~G~~~~L~~~-~~~y~~l~~ 573 (592)
T PRK10790 534 RLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QGRYWQMYQ 573 (592)
T ss_pred chHHHHhCCEEEEEECCEEEEEcCHHHHHhC-CCHHHHHHH
Confidence 9999999999999999999999999999877 466666654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=447.00 Aligned_cols=355 Identities=22% Similarity=0.300 Sum_probs=245.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHH-Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++| ++|+|.++|.++...+... .++.++|++|++..
T Consensus 18 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 93 (506)
T PRK13549 18 VKALDNVSLKVRAG-EIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAGIAIIHQELAL--- 93 (506)
T ss_pred eEeecceeEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCCeEEEEecccc---
Confidence 45799999999998 99999999999999999999999996 8999999999998766554 45789999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
+. . .++.+++.... ........ .+..+.++.++...........+
T Consensus 94 --------~~------------~------~tv~e~l~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~L 144 (506)
T PRK13549 94 --------VK------------E------LSVLENIFLGNEITPGGIMDYDAMY---LRAQKLLAQLKLDINPATPVGNL 144 (506)
T ss_pred --------CC------------C------CcHHHHhhhcccccccCCcCHHHHH---HHHHHHHHHcCCCCCcccchhhC
Confidence 10 0 00111100000 00001111 12223333444444445555677
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+.. ||++++|++|+++
T Consensus 145 S--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~ 222 (506)
T PRK13549 145 G--LGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHI 222 (506)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEe
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999999
Q ss_pred eecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCCCC
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTGAG 504 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nGsG 504 (602)
..++++++... ...............+........ .+.+......+.. .....+.++||++++||++||+|+||||
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsG 300 (506)
T PRK13549 223 GTRPAAGMTED--DIITMMVGRELTALYPREPHTIGEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAG 300 (506)
T ss_pred eecccccCCHH--HHHHHhhCcCccccccccccCCCCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCC
Confidence 99887765322 111111000000000000000001 1122222222210 1122456799999999999999999999
Q ss_pred hHHHHHHHHhccC-CCCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCC-----CC----C---
Q psy3001 505 KSSLTLALFRIIE-PADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPV-----GE----S--- 566 (602)
Q Consensus 505 KSTLl~~L~g~~~-~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~-----~~----~--- 566 (602)
||||+++|+|+++ |++|+|.++|+++...+. ...+++++||||+| .+|. .||.+|+... .. .
T Consensus 301 KSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~ 380 (506)
T PRK13549 301 RTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAA 380 (506)
T ss_pred HHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHH
Confidence 9999999999998 599999999998865443 34567899999997 3554 4999998531 00 1
Q ss_pred cHHHHHHHHHHcCCC-cccccccc
Q psy3001 567 SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 567 ~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
..+++.++++.+++. +..++.+.
T Consensus 381 ~~~~~~~~l~~~~l~~~~~~~~~~ 404 (506)
T PRK13549 381 ELKTILESIQRLKVKTASPELAIA 404 (506)
T ss_pred HHHHHHHHHHhcCccCCCcccccc
Confidence 124588899999995 45454443
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-51 Score=451.23 Aligned_cols=359 Identities=23% Similarity=0.371 Sum_probs=246.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHH---Hh-hccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~ 268 (602)
...++|+||++.+| |++||+|+||||||||+++|+|+++| ++|+|.++|.++...+... ++ +.++|++|+
T Consensus 22 ~~~l~~isl~i~~G-e~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~ 100 (529)
T PRK15134 22 RTVVNDVSLQIEAG-ETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQE 100 (529)
T ss_pred eeeeeceEEEEeCC-CEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHHHHHHHhcCceEEEecC
Confidence 45899999999998 99999999999999999999999987 7999999999988766543 33 579999998
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCC---cccc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSP---IYSH 343 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~ 343 (602)
+...+. +.. .+.+.+... ....... .....+..+.++.++... ....
T Consensus 101 ~~~~~~-----~~~----------------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~ 152 (529)
T PRK15134 101 PMVSLN-----PLH----------------------TLEKQLYEVLSLHRGMRR-EAARGEILNCLDRVGIRQAAKRLTD 152 (529)
T ss_pred chhhcC-----chh----------------------hHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHCCCCChHHHHhh
Confidence 532110 000 000000000 0000000 001112222333444332 2344
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEE
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
....|| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .++|||+|||+++.+.. ||||++|
T Consensus 153 ~~~~LS--gGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l 230 (529)
T PRK15134 153 YPHQLS--GGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVM 230 (529)
T ss_pred CCcccC--HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEE
Confidence 566777 699999999999999999999999999999999999999998864 36899999999999987 9999999
Q ss_pred eCceEEeecChhHHhhcchhHHHH-HHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHh---------cccccccceeeEE
Q psy3001 421 DKGLVVEFDSPSVLMKNKASIFYS-MAKDAGLAWLAVRLETVG-NLITFSAALLAVLS---------KETLNAGLVGLSV 489 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------~~~~~~~~~~l~i 489 (602)
++|++++.|++++++......+.. ......... ........ ..+.+......+.. .....++++||++
T Consensus 231 ~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i 309 (529)
T PRK15134 231 QNGRCVEQNRAATLFSAPTHPYTQKLLNSEPSGD-PVPLPEPASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTL 309 (529)
T ss_pred ECCEEEEeCCHHHHhhCCCCHHHHHHHHhCcccc-ccccCCCCCCcccccCcEEEeecCccccccccccceeeecceeEE
Confidence 999999999988876543221111 111000000 00000000 11222222222210 0123456899999
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCc--cccc-cchhcccCCC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDP--VLFS-GTLRLNLDPV 563 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp--~lf~-~Tv~~nl~~~ 563 (602)
++||++||+|+||||||||+++|+|+++ ++|+|+++|+++...+... +|++++||||+| .+|. .||++|+...
T Consensus 310 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~ 388 (529)
T PRK15134 310 RPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEG 388 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHH
Confidence 9999999999999999999999999995 8999999999987665433 467899999998 3665 4999998521
Q ss_pred ----C---CC--cHHHHHHHHHHcCCC-cccccccc
Q psy3001 564 ----G---ES--SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 564 ----~---~~--~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
. .. .++++.++++.+++. +..++.|.
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 424 (529)
T PRK15134 389 LRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPA 424 (529)
T ss_pred HHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCc
Confidence 1 11 234588999999996 34454443
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=443.25 Aligned_cols=351 Identities=23% Similarity=0.329 Sum_probs=244.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHh-hccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR-SRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~-~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++ +.++|++|++..
T Consensus 24 ~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~----- 97 (510)
T PRK15439 24 VEVLKGIDFTLHAG-EVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIYLVPQEPLL----- 97 (510)
T ss_pred ceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccCcc-----
Confidence 35789999999988 99999999999999999999999999999999999998877766554 469999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. ..++.+++..... .... ...+..+.++.++...........+| |||||
T Consensus 98 ------~~------------------~~tv~e~l~~~~~-~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 147 (510)
T PRK15439 98 ------FP------------------NLSVKENILFGLP-KRQA---SMQKMKQLLAALGCQLDLDSSAGSLE--VADRQ 147 (510)
T ss_pred ------CC------------------CCcHHHHhhcccc-cchH---HHHHHHHHHHHcCCCccccCChhhCC--HHHHH
Confidence 10 0011111110000 0000 11122233334444444455556777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||++||+++.+.. ||++++|++|+++..|+++++
T Consensus 148 rv~la~aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 148 IVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999999999999999999999999999999999998864 47899999999999987 999999999999999988876
Q ss_pred hhcchhHHHHHHHhhhhhHHHH--H----HHhhhhhHHHHHHHHHHHhcccc---cccceeeEEecceeEEEECCCCCCh
Q psy3001 435 MKNKASIFYSMAKDAGLAWLAV--R----LETVGNLITFSAALLAVLSKETL---NAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
... ................. . .+....... .....+....+ .++++||++++|+++||+|+|||||
T Consensus 228 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~l~~isl~i~~Ge~~~l~G~NGsGK 302 (510)
T PRK15439 228 STD--DIIQAITPAAREKSLSASQKLWLELPGNRRQQA---AGAPVLTVEDLTGEGFRNISLEVRAGEILGLAGVVGAGR 302 (510)
T ss_pred CHH--HHHHHHhCccccccccccccccccccccccccC---CCCceEEEeCCCCCCccceeEEEcCCcEEEEECCCCCCH
Confidence 532 11111100000000000 0 000000000 00000111111 2467999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECCeecCCCChhh-hhccceEecCCcc---cccc-chhcccCCC-----C---CC--cHHH
Q psy3001 506 SSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQDPV---LFSG-TLRLNLDPV-----G---ES--SDEA 570 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i~~V~Qdp~---lf~~-Tv~~nl~~~-----~---~~--~~~~ 570 (602)
|||+++|+|+++|++|+|.++|+++...+... .+++++|+||+|. +|.. |+.+|+... . .. .+++
T Consensus 303 STLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~ 382 (510)
T PRK15439 303 TELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAV 382 (510)
T ss_pred HHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHH
Confidence 99999999999999999999999987766543 4568999999973 5654 888887311 0 11 2245
Q ss_pred HHHHHHHcCCC-cccccccc
Q psy3001 571 IWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~-~~~~~~~~ 589 (602)
+.++++.+++. +..++.+.
T Consensus 383 ~~~~l~~~~l~~~~~~~~~~ 402 (510)
T PRK15439 383 LERYRRALNIKFNHAEQAAR 402 (510)
T ss_pred HHHHHHHcCCCCCCccCccc
Confidence 78899999996 55555443
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=441.97 Aligned_cols=353 Identities=20% Similarity=0.274 Sum_probs=239.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 17 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~----- 90 (501)
T PRK11288 17 VKALDDISFDCRAG-QVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVAIIYQELHL----- 90 (501)
T ss_pred EEEEeeeeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEEEEEechhc-----
Confidence 35799999999998 9999999999999999999999999999999999999865543 3467789999997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc---cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. .. ++.+++.... ............+..+.++.++...........+| ||
T Consensus 91 ------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG 144 (501)
T PRK11288 91 ------VP------------EM------TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLS--IG 144 (501)
T ss_pred ------cC------------CC------CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCC--HH
Confidence 10 00 0101000000 00000000111122233334444443445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..+..
T Consensus 145 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 145 QRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHHHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999999999998864 47899999999999987 999999999999865543
Q ss_pred hHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHH
Q psy3001 432 SVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTL 510 (602)
Q Consensus 432 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~ 510 (602)
...... ......................... .+.+.... .. ..++++||++++||++||+|+||||||||++
T Consensus 225 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~-~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk 297 (501)
T PRK11288 225 MAQVDR-DQLVQAMVGREIGDIYGYRPRPLGEVRLRLDGLK-----GP-GLREPISFSVRAGEIVGLFGLVGAGRSELMK 297 (501)
T ss_pred cccCCH-HHHHHHhcCCCccccccccccCCCCcEEEEeccc-----cC-CcccceeEEEeCCcEEEEEcCCCCCHHHHHH
Confidence 211110 0111000000000000000000000 00011100 01 1346799999999999999999999999999
Q ss_pred HHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcc---ccc-cchhcccCCCC-----------CC--cHHHHH
Q psy3001 511 ALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPV---LFS-GTLRLNLDPVG-----------ES--SDEAIW 572 (602)
Q Consensus 511 ~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~---lf~-~Tv~~nl~~~~-----------~~--~~~~i~ 572 (602)
+|+|+++|++|+|.++|+++...++ ..++++++|+||+|. +|. .|+.+|+.... .. ..+++.
T Consensus 298 ~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~ 377 (501)
T PRK11288 298 LLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENAD 377 (501)
T ss_pred HHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHH
Confidence 9999999999999999998875443 345678999999983 554 69999975321 01 124588
Q ss_pred HHHHHcCCC-cccccccc
Q psy3001 573 KALELAHLN-TFVSNLPA 589 (602)
Q Consensus 573 ~al~~~~l~-~~~~~~~~ 589 (602)
++++.+++. +..++.|.
T Consensus 378 ~~l~~~~l~~~~~~~~~~ 395 (501)
T PRK11288 378 RFIRSLNIKTPSREQLIM 395 (501)
T ss_pred HHHHhcCcccCCccCccc
Confidence 899999994 55555444
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-49 Score=403.64 Aligned_cols=408 Identities=24% Similarity=0.334 Sum_probs=263.5
Q ss_pred ccchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---H-HHHHH
Q psy3001 2 LANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---V-TITVF 77 (602)
Q Consensus 2 ~~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~ 77 (602)
|+...+++-++.-.+.|+|+..+.+++|.++.+|++.+.+..-...|...+...+..++-.++-+.+... + +...+
T Consensus 98 fa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~ 177 (591)
T KOG0057|consen 98 FAKVAQRVIRDSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAF 177 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHH
Confidence 5677889999999999999999999999999999999999988888888776555555444433322221 1 11112
Q ss_pred HHHHHHHHHHHH--------HHHHHHHHHHHHhhcccchhhhhcchhHHHHHHHH-------------HHhh--------
Q psy3001 78 FYGFVISLGTLF--------AAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSS-------------DVNT-------- 128 (602)
Q Consensus 78 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~-------------~~~~-------- 128 (602)
.+..+..++.+. +..++|.++-....+.+...++....=.+.+.|.+ +...
T Consensus 178 ~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~s 257 (591)
T KOG0057|consen 178 ALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSS 257 (591)
T ss_pred HHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhH
Confidence 222222222221 11122222222222211111111111122211111 0000
Q ss_pred --hhhHH-----------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q psy3001 129 --LDNKL-----------------------TLSVQ---QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQE 180 (602)
Q Consensus 129 --~~~~~-----------------------~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~ 180 (602)
+.++. .++++ .+.+..+++..|+..+...+..+.+++.-++-.....+....
T Consensus 258 l~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~ 337 (591)
T KOG0057|consen 258 LAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDED 337 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhh
Confidence 00000 00111 112234455556666667777777777766666544322111
Q ss_pred cccccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 181 AEWVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
. ...+.......+.|+|+||+|.|.++ +|.+||||+|||||||++|+|.++++ ++|+|++||
T Consensus 338 i----~~~~~~i~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG 412 (591)
T KOG0057|consen 338 I----QEAALPIELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDG 412 (591)
T ss_pred h----hhccCCcccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECC
Confidence 1 11111111234679999999999764 27799999999999999999999999 999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 326 (602)
+++++++...+|+.||+|||+ ..+| ++++..| +... .....++.++.+.
T Consensus 413 ~dik~~~~~SlR~~Ig~VPQd-----------~~LF-------------ndTIl~N------I~YGn~sas~eeV~e~~k 462 (591)
T KOG0057|consen 413 QDIKEVSLESLRQSIGVVPQD-----------SVLF-------------NDTILYN------IKYGNPSASDEEVVEACK 462 (591)
T ss_pred eeHhhhChHHhhhheeEeCCc-----------cccc-------------chhHHHH------hhcCCCCcCHHHHHHHHH
Confidence 999999999999999999998 4555 2332222 1100 0111111111111
Q ss_pred H-HH-HHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QL-KRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~-~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
+ .+ +.+..+ +-...+++.|..+| |||||||++|||+++||+|+++|||||+||.+||+.+.+.+.+...++|+|
T Consensus 463 ~a~~hd~i~~l~~GY~T~VGerG~~LS--GGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI 540 (591)
T KOG0057|consen 463 RAGLHDVISRLPDGYQTLVGERGLMLS--GGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVI 540 (591)
T ss_pred HcCcHHHHHhccccchhhHhhcccccc--cchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEE
Confidence 1 01 111111 11234788888899 599999999999999999999999999999999999999999988899999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+|.||++++.+||+|+++++|++.++|+|++++. +.+.|...|.
T Consensus 541 ~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~ 584 (591)
T KOG0057|consen 541 MIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWT 584 (591)
T ss_pred EEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhc
Confidence 9999999999999999999999999999999998 5666666554
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=455.16 Aligned_cols=361 Identities=27% Similarity=0.338 Sum_probs=246.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC----------CCChH---HHh-hccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR----------TLGLH---TLR-SRLT 263 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~----------~~~~~---~~~-~~i~ 263 (602)
...++|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++. ..+.. .++ +.|+
T Consensus 29 ~~~l~~is~~v~~G-e~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig 107 (623)
T PRK10261 29 IAAVRNLSFSLQRG-ETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMA 107 (623)
T ss_pred eeEEEeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccccCCHHHHHHHhCCCEE
Confidence 35899999999998 999999999999999999999999999999999987542 22222 233 4799
Q ss_pred eecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC---
Q psy3001 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS--- 338 (602)
Q Consensus 264 ~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~--- 338 (602)
+|+|++...+. |. .++.+++.... ...... .....+..+.++.++..
T Consensus 108 ~v~Q~~~~~l~-----~~----------------------~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~ 159 (623)
T PRK10261 108 MIFQEPMTSLN-----PV----------------------FTVGEQIAESIRLHQGASR-EEAMVEAKRMLDQVRIPEAQ 159 (623)
T ss_pred EEEeCchhhcC-----CC----------------------CCHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHCCCCChh
Confidence 99998531110 00 01111100000 000000 01112233334444442
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CC
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SD 415 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d 415 (602)
........+|| |||||||+|||||+.+|++|||||||++||+.++..+.+.++++. + ++|||+|||+++.+.. ||
T Consensus 160 ~~~~~~~~~LS--gGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~ad 237 (623)
T PRK10261 160 TILSRYPHQLS--GGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIAD 237 (623)
T ss_pred hHHhCCCccCC--HHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCC
Confidence 23455667788 699999999999999999999999999999999999999999874 3 7899999999999987 99
Q ss_pred eEEEEeCceEEeecChhHHhhcchhHHHHHHHhh--hh-hH----HHHHHH-----------h--------hhh-hHHHH
Q psy3001 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA--GL-AW----LAVRLE-----------T--------VGN-LITFS 468 (602)
Q Consensus 416 ~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~--~~-~~----~~~~~~-----------~--------~~~-~~~~~ 468 (602)
||++|++|++++.|++++++..+...|....... .. .+ .....+ + ... .+.+.
T Consensus 238 ri~vl~~G~i~~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 317 (623)
T PRK10261 238 RVLVMYQGEAVETGSVEQIFHAPQHPYTRALLAAVPQLGAMKGLDYPRRFPLISLEHPAKQEPPIEQDTVVDGEPILQVR 317 (623)
T ss_pred EEEEeeCCeecccCCHHHhhcCCCChhhhhhhhccCcccccccccCCccccccccccccccCcccccccccCCCceEEEe
Confidence 9999999999999999888754332222111000 00 00 000000 0 000 01111
Q ss_pred HHHHHHHh--c-------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---
Q psy3001 469 AALLAVLS--K-------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH--- 536 (602)
Q Consensus 469 ~~~~~~~~--~-------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~--- 536 (602)
.....+.. . ....++++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..
T Consensus 318 ~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~ 397 (623)
T PRK10261 318 NLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQ 397 (623)
T ss_pred eeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHH
Confidence 11111110 0 01245689999999999999999999999999999999999999999999999776543
Q ss_pred hhhccceEecCCc--cccc-cchhcccCC----CCC----CcHHHHHHHHHHcCCC-cccccccc
Q psy3001 537 TLRSRLTIIPQDP--VLFS-GTLRLNLDP----VGE----SSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 537 ~lr~~i~~V~Qdp--~lf~-~Tv~~nl~~----~~~----~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
.+|++|+||||+| .++. .||.+|+.. ... ...+++.++|+.++|. ++.++.|.
T Consensus 398 ~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 462 (623)
T PRK10261 398 ALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPH 462 (623)
T ss_pred HhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 3567899999998 3665 489988742 111 1235688999999995 44444443
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-51 Score=400.74 Aligned_cols=368 Identities=27% Similarity=0.387 Sum_probs=270.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHHHhh----ccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHTLRS----RLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~ 268 (602)
...++++||.+.+| |.+||||+||||||-..+.++|+++. -+|+|.++|.++-..+...+|. +|++++|+
T Consensus 23 ~~aVk~isf~i~~G-EtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~~lr~iRG~~I~MIFQE 101 (534)
T COG4172 23 VEAVKGISFDIEAG-ETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQE 101 (534)
T ss_pred eEeeccceeeecCC-CEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHHHHhhhcccceEEEecc
Confidence 46799999999998 99999999999999999999999975 4799999999999999888774 89999999
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC---CcccccC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS---PIYSHFG 345 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ 345 (602)
|..-.. |..- ....+.+.+.. .... ...++..+.++.++.++.. .-+..++
T Consensus 102 PMtSLN-----Pl~t------------------Ig~Qi~E~l~~--Hrg~-~~~~Ar~r~lelL~~VgI~~p~~rl~~yP 155 (534)
T COG4172 102 PMTSLN-----PLHT------------------IGKQLAEVLRL--HRGL-SRAAARARALELLELVGIPEPEKRLDAYP 155 (534)
T ss_pred cccccC-----cHhH------------------HHHHHHHHHHH--Hhcc-cHHHHHHHHHHHHHHcCCCchhhhhhhCC
Confidence 653221 1110 00111110000 0000 1123444556666555542 2467789
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
+.+|| ||||||.||.||+.+|++||-||||.+||......|.+.|+++.+ |..+++||||+..+.. ||||+||.+
T Consensus 156 HeLSG--GqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~ 233 (534)
T COG4172 156 HELSG--GQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQH 233 (534)
T ss_pred cccCc--chhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEec
Confidence 99995 999999999999999999999999999999999999999998754 7899999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhh-------H--HH--HHHHHHHHhcccccccceeeEEec
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNL-------I--TF--SAALLAVLSKETLNAGLVGLSVSY 491 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~--~~--~~~~~~~~~~~~~~~~~~~l~i~~ 491 (602)
|+++|.|+.+.++..+...|....-+....-.+... +.... + .| ....+.........++.+||++++
T Consensus 234 G~ivE~~~t~~lF~~PqHpYTr~Ll~aeP~g~~~p~-~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~ 312 (534)
T COG4172 234 GEIVETGTTETLFAAPQHPYTRKLLAAEPSGDPPPL-PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRR 312 (534)
T ss_pred cEEeecCcHHHHhhCCCChHHHHHHhcCCCCCCCCC-CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecC
Confidence 999999999999999888888765433211000000 00000 0 00 000000000112234579999999
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccc-ccc--chh----cccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVL-FSG--TLR----LNLD 561 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~l-f~~--Tv~----~nl~ 561 (602)
||.+||||.+|||||||-++|+|+++++ |+|.++|+++...+.+ .+|+++.+|+|||+= ++. ||. |-+.
T Consensus 313 gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~ 391 (534)
T COG4172 313 GQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLR 391 (534)
T ss_pred CCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhh
Confidence 9999999999999999999999999865 9999999999988765 468999999999962 222 443 2332
Q ss_pred CC-----CCCcHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 562 PV-----GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 562 ~~-----~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
.. ....++++.+||+.+||+. .--++||++.++|.
T Consensus 392 vh~~~ls~~eR~~rv~~aL~EVGLDp---~~r~RYPhEFSGGQ 431 (534)
T COG4172 392 VHEPKLSAAERDQRVIEALEEVGLDP---ATRNRYPHEFSGGQ 431 (534)
T ss_pred hcCCCCCHHHHHHHHHHHHHHcCCCh---hHhhcCCcccCcch
Confidence 21 2235677999999999987 33468999998764
|
|
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-49 Score=403.02 Aligned_cols=405 Identities=20% Similarity=0.299 Sum_probs=264.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH-----
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV----- 76 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~----- 76 (602)
+..|+..+||.++|+++...+..-..+.++||+++|+..|++.++..+-..+..++..+..+....+ ++.++
T Consensus 85 AtfrvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll 164 (573)
T COG4987 85 ATFRVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLL 164 (573)
T ss_pred HHHHHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3468889999999999999999999999999999999999999999876555555544433322211 11111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchh----HHH---HHHHH--------------HHhh---
Q psy3001 77 ----FFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVG----RVL---SRFSS--------------DVNT--- 128 (602)
Q Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~---~r~~~--------------~~~~--- 128 (602)
++..+++|...+...+....+..+....+... +.+...| .++ +++.. ..+.
T Consensus 165 ~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~-~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~ 243 (573)
T COG4987 165 GLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQ-FTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTG 243 (573)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH-HHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11122223322222222221111111111111 1111122 000 11110 0000
Q ss_pred hhhHH-HH-----HHHHH--------------------HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 129 LDNKL-TL-----SVQQT--------------------LSQPFKITQTLNWLV-RMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 129 ~~~~~-~~-----~~~~~--------------------~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
..+.+ .+ .++.+ +-..+....++..+. ..+..+.+...+.+|+.++.+++++.
T Consensus 244 ~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~ 323 (573)
T COG4987 244 LSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEV 323 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCccc
Confidence 00000 00 00000 001122233344444 45577788889999999999887765
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
... .+... -+ ...++++||||+|+.. +|.+||+|+||||||||++++.|.++|++|+|.++|
T Consensus 324 ~~~-~~~~~--~~-~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g 399 (573)
T COG4987 324 TFP-DEQTA--TT-GQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNG 399 (573)
T ss_pred CCC-ccccC--Cc-cceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECC
Confidence 432 11000 01 1156777777777542 288999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS- 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 326 (602)
.++..++...+|+.+++++|. +.+| .++++.|-..... . ...++.++...
T Consensus 400 ~~~~~l~~~~~~e~i~vl~Qr-----------~hlF-------------~~Tlr~NL~lA~~----~-AsDEel~~aL~q 450 (573)
T COG4987 400 VEIASLDEQALRETISVLTQR-----------VHLF-------------SGTLRDNLRLANP----D-ASDEELWAALQQ 450 (573)
T ss_pred cChhhCChhhHHHHHhhhccc-----------hHHH-------------HHHHHHHHhhcCC----C-CCHHHHHHHHHH
Confidence 999999999999999999996 4444 5555444222110 1 11111111111
Q ss_pred HHHHH-Hhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 RQLKR-LESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 ~~~~~-l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
.+++. ++.. +....+++.|..+|| |||||++|||+|++|.++++|||||.+||+.|++++.+.+....+++|+|+
T Consensus 451 vgL~~l~~~~p~gl~t~lge~G~~LSG--GE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~ 528 (573)
T COG4987 451 VGLEKLLESAPDGLNTWLGEGGRRLSG--GERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLM 528 (573)
T ss_pred cCHHHHHHhChhhhhchhccCCCcCCc--hHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEE
Confidence 11111 1111 334467888999995 999999999999999999999999999999999999999999888999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||||+..+..||||++|++|++++.|+|.+++.+ ++.|+.+.
T Consensus 529 vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~ 570 (573)
T COG4987 529 VTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRYKRLY 570 (573)
T ss_pred EecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHHHHHh
Confidence 9999999999999999999999999999999985 55555543
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-50 Score=440.38 Aligned_cols=354 Identities=21% Similarity=0.276 Sum_probs=241.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHH-Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+... .++.++|++|++..
T Consensus 14 ~~il~~isl~i~~G-e~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 89 (500)
T TIGR02633 14 VKALDGIDLEVRPG-ECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGIVIIHQELTL--- 89 (500)
T ss_pred eEeecceEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCEEEEeecccc---
Confidence 35799999999998 99999999999999999999999987 7999999999998766544 45679999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-c------chhHHHHHHHHHHHHHHhhcccCCcc-cccCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-C------SNLQRFYVATSRQLKRLESVSRSPIY-SHFGE 346 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~ 346 (602)
+. .. ++.+++.... . ....... .+..+.++.++..... .....
T Consensus 90 --------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~ 140 (500)
T TIGR02633 90 --------VP------------EL------SVAENIFLGNEITLPGGRMAYNAMY---LRAKNLLRELQLDADNVTRPVG 140 (500)
T ss_pred --------CC------------CC------cHHHHHHhhccccccccccCHHHHH---HHHHHHHHHcCCCCCcccCchh
Confidence 10 00 0000000000 0 0001111 1222233344433222 23345
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. +++|||+|||+++.+.. ||+|++|++|+
T Consensus 141 ~LS--gG~~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~ 218 (500)
T TIGR02633 141 DYG--GGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQ 218 (500)
T ss_pred hCC--HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCe
Confidence 677 699999999999999999999999999999999999999998864 46899999999999987 99999999999
Q ss_pred EEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCC
Q psy3001 425 VVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTG 502 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nG 502 (602)
++..+++++.... ...............+....+... .+.+.+....+.. .....++++||++++||++||+|+||
T Consensus 219 i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NG 296 (500)
T TIGR02633 219 HVATKDMSTMSED--DIITMMVGREITSLYPHEPHEIGDVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVG 296 (500)
T ss_pred EeeecCcccCCHH--HHHHHHhCccccccccccccCCCCceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCC
Confidence 9988876654221 111111000000000000000000 1111111111100 11224567999999999999999999
Q ss_pred CChHHHHHHHHhccCC-CCceEEECCeecCCCCh-hhhhccceEecCCc---cccc-cchhcccCCCC--------C-C-
Q psy3001 503 AGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDP---VLFS-GTLRLNLDPVG--------E-S- 566 (602)
Q Consensus 503 sGKSTLl~~L~g~~~~-~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp---~lf~-~Tv~~nl~~~~--------~-~- 566 (602)
||||||+++|+|+++| ++|+|.++|+++...+. ..+|++++||||++ .+|. .||++|+.... . .
T Consensus 297 sGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~ 376 (500)
T TIGR02633 297 AGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDA 376 (500)
T ss_pred CCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCH
Confidence 9999999999999995 89999999998865443 45678899999997 3665 49999985321 1 1
Q ss_pred --cHHHHHHHHHHcCCCc-cccccc
Q psy3001 567 --SDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 567 --~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
..+++.++++.+++.+ ..++.|
T Consensus 377 ~~~~~~~~~~l~~~~l~~~~~~~~~ 401 (500)
T TIGR02633 377 AAELQIIGSAIQRLKVKTASPFLPI 401 (500)
T ss_pred HHHHHHHHHHHHhcCccCCCccCcc
Confidence 1245888999999853 344433
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-47 Score=435.27 Aligned_cols=407 Identities=25% Similarity=0.360 Sum_probs=272.2
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHH-HHHHHHHHHH--HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN-CLFSVLYLMP--VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+ +|++.+++++...+...+. .++.++.+++ ++.+.+.+.
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li 283 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGV 283 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778899999999999999999999999999999999 6999999887554444433 2222222111 111211111
Q ss_pred H--HHHHHHH---HHH---HHHHHHHHHHhhcccchhhhhcchh----H-------HHHHHHHHHhh----------hh-
Q psy3001 81 F--VISLGTL---FAA---KRLHEKLLKSMLRWSPLFFDTTPVG----R-------VLSRFSSDVNT----------LD- 130 (602)
Q Consensus 81 ~--~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~g----~-------~~~r~~~~~~~----------~~- 130 (602)
+ .+++..+ ... ++...+..+...+ ....+.+...| + ..+++.+..+. ..
T Consensus 284 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 362 (694)
T TIGR01846 284 VIGSLVCYALLSVFVGPILRKRVEDKFERSAA-ATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGN 362 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1111111 111 1111122222222 11233333333 1 11222221000 00
Q ss_pred ------hHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .+++|.+ ..+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 363 ~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~~ 442 (694)
T TIGR01846 363 IAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEPR 442 (694)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 000 0123322 233445667888888999999999999999999998766533
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.. ... ......+.++|+||+|+|+++ ++.+||+|+||||||||+|+|+|+++|++|+|.+||+
T Consensus 443 ~~--~~~-~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~ 519 (694)
T TIGR01846 443 SA--GLA-ALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGV 519 (694)
T ss_pred CC--CCC-CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 11 100 011123568888888888532 2779999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++++++...+|+.+++|||+ +.+| .+++..|-.... +. ...++.......
T Consensus 520 ~i~~~~~~~~r~~i~~v~q~-----------~~lf-------------~~ti~eNi~~~~----~~-~~~~~i~~a~~~~ 570 (694)
T TIGR01846 520 DLAIADPAWLRRQMGVVLQE-----------NVLF-------------SRSIRDNIALCN----PG-APFEHVIHAAKLA 570 (694)
T ss_pred ehhhCCHHHHHHhCeEEccC-----------Ceeh-------------hhhHHHHHhcCC----CC-CCHHHHHHHHHHc
Confidence 99999999999999999998 5555 333332211100 00 111111111111
Q ss_pred HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.+ +.+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 571 ~l~~~i~~lp~gl~t~i~~~g~~LS--gGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 648 (694)
T TIGR01846 571 GAHDFISELPQGYNTEVGEKGANLS--GGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIII 648 (694)
T ss_pred ChHHHHHhCcCccCcEecCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 11 11111 134445677788888 59999999999999999999999999999999999999999988778999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+++++++. .+.|..+++
T Consensus 649 tH~~~~~~~~d~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 690 (694)
T TIGR01846 649 AHRLSTVRACDRIIVLEKGQIAESGRHEELLAL-QGLYARLWQ 690 (694)
T ss_pred eCChHHHHhCCEEEEEeCCEEEEeCCHHHHHHc-CChHHHHHH
Confidence 999999988999999999999999999999876 466666554
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-50 Score=435.95 Aligned_cols=351 Identities=18% Similarity=0.284 Sum_probs=239.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 11 ~~il~~vs~~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 86 (491)
T PRK10982 11 VKALDNVNLKVRPH-SIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVHQELNLVL--- 86 (491)
T ss_pred EEeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEeccccccc---
Confidence 45799999999998 99999999999999999999999999999999999998765543 45678999999742110
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc------ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
. .++.+++... .......... +..+.++.++...........+|
T Consensus 87 --------------------~------~tv~~~l~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS- 136 (491)
T PRK10982 87 --------------------Q------RSVMDNMWLGRYPTKGMFVDQDKMYR---DTKAIFDELDIDIDPRAKVATLS- 136 (491)
T ss_pred --------------------C------CCHHHHhhcccccccccccCHHHHHH---HHHHHHHHcCCCCCccCchhhCC-
Confidence 0 0010000000 0000011111 12223334444434445566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||++|||||+.+|++|||||||++||+.+..++.+.++++. .++|+|++||+++.+.. ||++++|++|+++..
T Consensus 137 -gGq~qrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~ 215 (491)
T PRK10982 137 -VSQMQMIEIAKAFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIAT 215 (491)
T ss_pred -HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEee
Confidence 699999999999999999999999999999999999999998864 47899999999999987 999999999999999
Q ss_pred cChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHH
Q psy3001 429 DSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVG-NLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSS 507 (602)
Q Consensus 429 g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKST 507 (602)
++++++... .....+.........+....... ..+.+.+.... ....++++||++++||++||+|+|||||||
T Consensus 216 ~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~~~----~~~~l~~vsl~i~~Ge~~~l~G~nGsGKST 289 (491)
T PRK10982 216 QPLAGLTMD--KIIAMMVGRSLTQRFPDKENKPGEVILEVRNLTSL----RQPSIRDVSFDLHKGEILGIAGLVGAKRTD 289 (491)
T ss_pred cChhhCCHH--HHHHHHhCCCcccccccccCCCCCcEEEEeCcccc----cCcccceeeEEEeCCcEEEEecCCCCCHHH
Confidence 887765321 11111110000000000000000 00111111111 112356799999999999999999999999
Q ss_pred HHHHHHhccCCCCceEEECCeecCCCChh-hhhccceEecCCcc---ccc-cchhcc-----cCCC----C--C--CcHH
Q psy3001 508 LTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPV---LFS-GTLRLN-----LDPV----G--E--SSDE 569 (602)
Q Consensus 508 Ll~~L~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~---lf~-~Tv~~n-----l~~~----~--~--~~~~ 569 (602)
|+++|+|+.+|++|+|.++|+++...+.. .+++.++|+||++. +|. .|+.+| +... + . ..++
T Consensus 290 Ll~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 369 (491)
T PRK10982 290 IVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKS 369 (491)
T ss_pred HHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHHH
Confidence 99999999999999999999999876653 45677999999974 454 355444 4211 1 1 1134
Q ss_pred HHHHHHHHcCCC-cccccccc
Q psy3001 570 AIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 570 ~i~~al~~~~l~-~~~~~~~~ 589 (602)
++.++++.+++. +..++.|.
T Consensus 370 ~~~~~l~~~~l~~~~~~~~~~ 390 (491)
T PRK10982 370 DTQWVIDSMRVKTPGHRTQIG 390 (491)
T ss_pred HHHHHHHhcCccCCCcccccc
Confidence 577888888885 33344433
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=444.16 Aligned_cols=346 Identities=24% Similarity=0.359 Sum_probs=234.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEEC-----------------------CeecC-
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIID-----------------------GVDIR- 251 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~-----------------------g~~~~- 251 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++ |.++.
T Consensus 13 ~~~l~~is~~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~ 91 (520)
T TIGR03269 13 KEVLKNISFTIEEG-EVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEP 91 (520)
T ss_pred eEeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccccccccccccccc
Confidence 45899999999998 999999999999999999999997 7999999997 22221
Q ss_pred ------CCC---hHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHH
Q psy3001 252 ------TLG---LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRF 321 (602)
Q Consensus 252 ------~~~---~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ 321 (602)
... ...+++.+++++|++..++. . .++.+++.... ......
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~----------------------~------~tv~~~l~~~~~~~~~~~- 142 (520)
T TIGR03269 92 EEVDFWNLSDKLRRRIRKRIAIMLQRTFALYG----------------------D------DTVLDNVLEALEEIGYEG- 142 (520)
T ss_pred cchhhhccCHHHHHHhhhcEEEEeccccccCC----------------------C------CCHHHHHHHHHHHcCCCH-
Confidence 111 12456789999996211110 0 00111100000 000000
Q ss_pred HHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--ccc
Q psy3001 322 YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHC 399 (602)
Q Consensus 322 ~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~ 399 (602)
.....+..+.++.++...........+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++. .++
T Consensus 143 ~~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~ 220 (520)
T TIGR03269 143 KEAVGRAVDLIEMVQLSHRITHIARDLS--GGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGI 220 (520)
T ss_pred HHHHHHHHHHHHHcCChhhhhcCcccCC--HHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCc
Confidence 0111222333444555444455566777 699999999999999999999999999999999999999998873 378
Q ss_pred EEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh--
Q psy3001 400 TVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS-- 476 (602)
Q Consensus 400 tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 476 (602)
|||+|||+++.+.. ||++++|++|+++..|+++++... +........ .. .........+.+......+..
T Consensus 221 tviivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~~~~~~~~~-~~--~~~~~~~~~l~~~~l~~~~~~~~ 293 (520)
T TIGR03269 221 SMVLTSHWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----FMEGVSEVE-KE--CEVEVGEPIIKVRNVSKRYISVD 293 (520)
T ss_pred EEEEEeCCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH----HHhhchhhc-cc--cccCCCCceEEEeccEEEeccCC
Confidence 99999999999987 999999999999988888776542 100000000 00 000000001111111111211
Q ss_pred -cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC-Cee---cCCCC---hhhhhccceEecCC
Q psy3001 477 -KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID-GVD---IRTLG---LHTLRSRLTIIPQD 548 (602)
Q Consensus 477 -~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~-g~~---i~~~~---~~~lr~~i~~V~Qd 548 (602)
.....++++||++++||++||+|+||||||||+++|+|+++|++|+|.++ |.+ +...+ ...++++++||||+
T Consensus 294 ~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~ 373 (520)
T TIGR03269 294 RGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQE 373 (520)
T ss_pred CCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccC
Confidence 11234567999999999999999999999999999999999999999996 643 33322 22456789999999
Q ss_pred cccccc-chhcccCCC---C-CC--cHHHHHHHHHHcCCCc
Q psy3001 549 PVLFSG-TLRLNLDPV---G-ES--SDEAIWKALELAHLNT 582 (602)
Q Consensus 549 p~lf~~-Tv~~nl~~~---~-~~--~~~~i~~al~~~~l~~ 582 (602)
+.+|.. ||++|+... . .. .++++.++++.+++.+
T Consensus 374 ~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 414 (520)
T TIGR03269 374 YDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDE 414 (520)
T ss_pred cccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCC
Confidence 988764 999998521 1 11 2345788999999964
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-50 Score=437.18 Aligned_cols=355 Identities=15% Similarity=0.128 Sum_probs=243.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+...+++.+++++|++...+...
T Consensus 17 ~il~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~-- 93 (490)
T PRK10938 17 KTLQLPSLTLNAG-DSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSP-- 93 (490)
T ss_pred eecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhceeccCcchhhccc--
Confidence 4799999999998 9999999999999999999999999999999999988776666677788999999743211000
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.+ . .+..++.+.+.. . . ....+..+.++.++...........+| ||||||+
T Consensus 94 ~~-----------------~--~~~~~~~~~~~~----~-~---~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qrv 144 (490)
T PRK10938 94 GE-----------------D--DTGRTTAEIIQD----E-V---KDPARCEQLAQQFGITALLDRRFKYLS--TGETRKT 144 (490)
T ss_pred ch-----------------h--hccccHHHhccc----c-h---hHHHHHHHHHHHcCCHhhhhCCcccCC--HHHHHHH
Confidence 00 0 000011111000 0 0 011122233334444444455566777 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+|||||+.+|++|||||||++||+.+..++.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..|+++++..
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 224 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQ 224 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998864 46899999999999988 99999999999999998887654
Q ss_pred cchhHHHHHHHhhhhhH--HHHHHHh--------hhhhHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChH
Q psy3001 437 NKASIFYSMAKDAGLAW--LAVRLET--------VGNLITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKS 506 (602)
Q Consensus 437 ~~~~~~~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKS 506 (602)
.. ............. .+...++ ....+.+.+....+ .....+.++||++++||++||+|+||||||
T Consensus 225 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~il~~vsl~i~~Ge~~~i~G~NGsGKS 300 (490)
T PRK10938 225 QA--LVAQLAHSEQLEGVQLPEPDEPSARHALPANEPRIVLNNGVVSY--NDRPILHNLSWQVNPGEHWQIVGPNGAGKS 300 (490)
T ss_pred ch--hhhhhhhhhccCccccCcccccccccccCCCCceEEEeceEEEE--CCeeEEeeceEEEcCCCEEEEECCCCCCHH
Confidence 31 1111110000000 0000000 00001111111111 111235679999999999999999999999
Q ss_pred HHHHHHHhccCC-CCceEEECCeecCC-CChhhhhccceEecCCccccc---cchhcccCCC--------CCC---cHHH
Q psy3001 507 SLTLALFRIIEP-ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPVLFS---GTLRLNLDPV--------GES---SDEA 570 (602)
Q Consensus 507 TLl~~L~g~~~~-~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qdp~lf~---~Tv~~nl~~~--------~~~---~~~~ 570 (602)
||+++|+|+.++ ++|+|.++|+++.. .+....|++++|+||++.++. .|+++++... ... .+++
T Consensus 301 TLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 380 (490)
T PRK10938 301 TLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKL 380 (490)
T ss_pred HHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHH
Confidence 999999999876 69999999987642 223345778999999986542 3566654210 011 1346
Q ss_pred HHHHHHHcCCCc-ccccccc
Q psy3001 571 IWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 571 i~~al~~~~l~~-~~~~~~~ 589 (602)
+.++++.+++.+ ..++.|.
T Consensus 381 ~~~~l~~~~l~~~~~~~~~~ 400 (490)
T PRK10938 381 AQQWLDILGIDKRTADAPFH 400 (490)
T ss_pred HHHHHHHcCCchhhccCchh
Confidence 889999999986 5555444
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=421.06 Aligned_cols=405 Identities=20% Similarity=0.244 Sum_probs=264.3
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHH-HH---HHHHHHHH-
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYL-MP---VTITVFFY- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~- 79 (602)
.+.+...++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++..+.. ++ .+.+.+.+
T Consensus 63 ~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li 142 (569)
T PRK10789 63 ASYQLAVELREDFYRQLSRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLL 142 (569)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 46788899999999999999999999999999999999999999876555555555443322211 11 11111111
Q ss_pred -HHHHHHHHHH--HHHHHHHH----HHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hhh
Q psy3001 80 -GFVISLGTLF--AAKRLHEK----LLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LDN 131 (602)
Q Consensus 80 -~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~~ 131 (602)
.+.+++..+. ...+...+ ..+...+ ....+.+...| +.+ +++...... ...
T Consensus 143 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (569)
T PRK10789 143 ALLPMPVMAIMIKRYGDQLHERFKLAQAAFSS-LNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDA 221 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 11111111 1111111 11123333333 111 222221000 000
Q ss_pred -------H-------H------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 132 -------K-------L------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 132 -------~-------~------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
. + .+++|.+ +.+...+..|+..+...+..++.+..+.+|+.++++.+++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~l~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~ 301 (569)
T PRK10789 222 RFDPTIYIAIGMANLLAIGGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVK 301 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 0 0 0122222 223344556777788888899999999999999997654432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... . .+..+.+.|+|++|+|+ +| ++++|+|+||||||||+++|+|+++|++|+|.+||
T Consensus 302 ~~~~~-~---~~~~~~I~~~~v~~~y~~~~~~~l~~i~~~i~~G-~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g 376 (569)
T PRK10789 302 DGSEP-V---PEGRGELDVNIRQFTYPQTDHPALENVNFTLKPG-QMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHD 376 (569)
T ss_pred CCCCC-C---CCCCCcEEEEEEEEECCCCCCccccCeeEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECC
Confidence 11100 0 01123466666666664 33 78999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (602)
+++.+++...+|+.+++++|+ |.+| .+++..|-.... +. ...++.......
T Consensus 377 ~~~~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~Ni~~~~----~~-~~~~~~~~~~~~ 427 (569)
T PRK10789 377 IPLTKLQLDSWRSRLAVVSQT-----------PFLF-------------SDTVANNIALGR----PD-ATQQEIEHVARL 427 (569)
T ss_pred EEHhhCCHHHHHhheEEEccC-----------Ceec-------------cccHHHHHhcCC----CC-CCHHHHHHHHHH
Confidence 999999999999999999998 5555 333322211100 00 011111111110
Q ss_pred -HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 328 -QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 328 -~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
.+ +.+.. .+.+...++.+.++| ||||||++|||||+++|++|||||||++||+++++.+.+.+++..+++|+|+
T Consensus 428 ~~l~~~i~~lp~gl~t~~~~~g~~LS--gGq~qRi~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~ 505 (569)
T PRK10789 428 ASVHDDILRLPQGYDTEVGERGVMLS--GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVII 505 (569)
T ss_pred cCCHHHHHhCcCcccceecCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 01 11111 123445666777888 5999999999999999999999999999999999999999998877899999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||||++.+..||+|++|++|++++.|+++++++. .+.|+.+.+
T Consensus 506 itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 548 (569)
T PRK10789 506 SAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYR 548 (569)
T ss_pred EecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHH
Confidence 9999999988999999999999999999999876 456666554
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=423.34 Aligned_cols=406 Identities=25% Similarity=0.379 Sum_probs=272.0
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++...+|..+++++++.|.++|++.+.|++++|+++|++.+++.+...+..++..++.+++.++ ++.+.+.+.
T Consensus 80 ~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i 159 (571)
T TIGR02203 80 WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLI 159 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45678899999999999999999999999999999999999999999887666666655544433222 122211111
Q ss_pred --HHHHHHHHH--HH-HHH---HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 81 --FVISLGTLF--AA-KRL---HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 81 --~~~~~~~~~--~~-~~~---~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
+.+++..+. .. ++. ..+..+...+ ....+.+...| +.+ +++.+..+.
T Consensus 160 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (571)
T TIGR02203 160 VVVMLPVLSILMRRVSKRLRRISKEIQNSMGQ-VTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGS 238 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11 111 1111111111 11223333333 111 122221000
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .+++|. +..+...+..|+..+......++++..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (571)
T TIGR02203 239 ISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKD 318 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 00000 011221 2333456677888888999999999999999999997655432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... . ..+..+.++++||+|+|++. +++++|+|+||||||||+++|+|+++|++|+|.+||+
T Consensus 319 ~~~~--~--~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~ 394 (571)
T TIGR02203 319 TGTR--A--IERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGH 394 (571)
T ss_pred CCCC--C--CCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCE
Confidence 1110 0 01123467788888877431 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++...++++++|+||+ |++| .++++.|-.... +.....++.......
T Consensus 395 ~i~~~~~~~~~~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~~~~~~i~~~l~~~ 446 (571)
T TIGR02203 395 DLADYTLASLRRQVALVSQD-----------VVLF-------------NDTIANNIAYGR----TEQADRAEIERALAAA 446 (571)
T ss_pred eHHhcCHHHHHhhceEEccC-----------cccc-------------cccHHHHHhcCC----CCCCCHHHHHHHHHHc
Confidence 99999999999999999998 6666 444433311100 000111111111111
Q ss_pred HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+.. .+.+..+++.|.++| ||||||++||||++++|+|++||||||+||+++++.+.+.|++..+++|+|+|
T Consensus 447 ~l~~~i~~lp~gldt~i~~~g~~LS--gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIii 524 (571)
T TIGR02203 447 YAQDFVDKLPLGLDTPIGENGVLLS--GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVI 524 (571)
T ss_pred ChHHHHHhCcCcccceecCCCCcCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 111 1111 233445667778888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~ 445 (602)
|||++.+..||+|++|++|++++.|+++++++. ++.|...
T Consensus 525 tH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~~-~~~~~~~ 564 (571)
T TIGR02203 525 AHRLSTIEKADRIVVMDDGRIVERGTHNELLAR-NGLYAQL 564 (571)
T ss_pred ehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHHc-CCHHHHH
Confidence 999999888999999999999999999999876 4455443
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-47 Score=419.21 Aligned_cols=405 Identities=23% Similarity=0.294 Sum_probs=261.5
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--HHH
Q psy3001 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY--GFV 82 (602)
Q Consensus 8 ~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~ 82 (602)
++..++|.++|+|++++|++||+++++|++++|+++|++.+...+...+..++..++.+++.++ .+.+.+.+ .+.
T Consensus 86 ~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~li~l~~ 165 (585)
T TIGR01192 86 GRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLSIVLMVL 165 (585)
T ss_pred HHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666799999999999999999999999999999999988776655555554444332211 11111111 111
Q ss_pred HHHHHHH---HHHHH---HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-----------------
Q psy3001 83 ISLGTLF---AAKRL---HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------------- 128 (602)
Q Consensus 83 ~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------------- 128 (602)
+++..+. ..++. ..+..+...+ ....+.+...| +.+ +++.+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (585)
T TIGR01192 166 GILYILIAKLVMQRTKNGQAAVEHHYHN-VFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASG 244 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111 11111 1111111111 11223333333 111 122110000
Q ss_pred hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Q psy3001 129 LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVND 186 (602)
Q Consensus 129 ~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 186 (602)
+...+ .++++.+ +.+...+..|+..+.+....+..+..+.+|+.++.+.+++.+....
T Consensus 245 ~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 324 (585)
T TIGR01192 245 LNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPAD 324 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCcc
Confidence 00000 0112221 2233345567777788888889999999999999876543221100
Q ss_pred CCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 187 KKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 187 ~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
.....+..+.++|+|++|+|+++ ++.++|+|+||||||||+++|+|+++|++|+|.+||.++.++
T Consensus 325 --~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~ 402 (585)
T TIGR01192 325 --APELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTV 402 (585)
T ss_pred --CCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhC
Confidence 00000123457777887777531 278999999999999999999999999999999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-HH-H
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QL-K 330 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~ 330 (602)
+...+|+.++++||+ +.+| .+++..| +.... ....++....... .+ +
T Consensus 403 ~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~N------i~~~~~~~~~~~~~~a~~~~~~~~ 452 (585)
T TIGR01192 403 TRESLRKSIATVFQD-----------AGLF-------------NRSIREN------IRLGREGATDEEVYEAAKAAAAHD 452 (585)
T ss_pred CHHHHHhheEEEccC-----------CccC-------------cccHHHH------HhcCCCCCCHHHHHHHHHHhCcHH
Confidence 999999999999998 4444 2222222 11100 0011111111111 11 1
Q ss_pred HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecc
Q psy3001 331 RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408 (602)
Q Consensus 331 ~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l 408 (602)
.+.. .+.+...++.+..+| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+||||+
T Consensus 453 ~i~~l~~g~~t~~~~~~~~LS--gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~ 530 (585)
T TIGR01192 453 FILKRSNGYDTLVGERGNRLS--GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRL 530 (585)
T ss_pred HHHhccccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCh
Confidence 1111 123344667777888 599999999999999999999999999999999999999998887789999999999
Q ss_pred cccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHh
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKD 448 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~ 448 (602)
+.+..||+|++|++|++++.|++++++++ .+.|+.++..
T Consensus 531 ~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~ 569 (585)
T TIGR01192 531 STVRNADLVLFLDQGRLIEKGSFQELIQK-DGRFYKLLRR 569 (585)
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHHC-CChHHHHHHh
Confidence 99988999999999999999999999876 5566666543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-46 Score=419.96 Aligned_cols=405 Identities=25% Similarity=0.308 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH--H
Q psy3001 8 RASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF--V 82 (602)
Q Consensus 8 ~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~ 82 (602)
+....++.++|+|++++|..+|++.++|++++|+++|++.+...+...+..++..++..++.++ .+.+.+.+.+ .
T Consensus 86 ~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~ 165 (588)
T PRK13657 86 RRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLSLVLVVL 165 (588)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334455699999999999999999999999999999999887655555554444333322211 1111111111 1
Q ss_pred HHHHHH--HHHHHHHHHHH----HHhhcccchhhhhcchh----HHH-------HHHHHHHhh-----------------
Q psy3001 83 ISLGTL--FAAKRLHEKLL----KSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------------- 128 (602)
Q Consensus 83 ~~~~~~--~~~~~~~~~~~----~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------------- 128 (602)
+++... ....+...+.. +...+ ....+.+...| +.+ +++....+.
T Consensus 166 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (588)
T PRK13657 166 GIVYTLITTLVMRKTKDGQAAVEEHYHD-LFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASV 244 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11111111111 11111 11123333333 111 111110000
Q ss_pred hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC
Q psy3001 129 LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVND 186 (602)
Q Consensus 129 ~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~ 186 (602)
+...+ .++++.+ +.+...+..|+..+......+..+..+.+|+.++.+.+++.+....
T Consensus 245 ~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~ 324 (588)
T PRK13657 245 LNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDPPG 324 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCCC
Confidence 00000 0112222 2233445667777788888888899999999999876443221111
Q ss_pred CCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC
Q psy3001 187 KKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253 (602)
Q Consensus 187 ~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~ 253 (602)
... ..+..+.++++||+|+|+++ ++.++|+|+||||||||+|+|+|+++|++|+|.+||.++.++
T Consensus 325 ~~~--~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~ 402 (588)
T PRK13657 325 AID--LGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTV 402 (588)
T ss_pred CCC--cCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhC
Confidence 000 00122457888888888531 278999999999999999999999999999999999999999
Q ss_pred ChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HH-HH
Q psy3001 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QL-KR 331 (602)
Q Consensus 254 ~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~ 331 (602)
+...+|++|+|+||+ |.+| .+++..|-.... +.. ..++....... .+ +.
T Consensus 403 ~~~~~r~~i~~v~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~-~d~~i~~al~~~~l~~~ 453 (588)
T PRK13657 403 TRASLRRNIAVVFQD-----------AGLF-------------NRSIEDNIRVGR----PDA-TDEEMRAAAERAQAHDF 453 (588)
T ss_pred CHHHHHhheEEEecC-----------cccc-------------cccHHHHHhcCC----CCC-CHHHHHHHHHHhCHHHH
Confidence 999999999999998 5555 334333311100 000 11111111110 11 11
Q ss_pred Hhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccc
Q psy3001 332 LES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN 409 (602)
Q Consensus 332 l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~ 409 (602)
+.. .+.+..+++.|.++| ||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++
T Consensus 454 i~~lp~gldt~i~~~g~~LS--gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~ 531 (588)
T PRK13657 454 IERKPDGYDTVVGERGRQLS--GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLS 531 (588)
T ss_pred HHhCcccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHH
Confidence 111 123444666777888 5999999999999999999999999999999999999999988877899999999999
Q ss_pred ccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 410 TIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 410 ~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
.+..||+|++|++|++++.|+++++++. .+.|..+..
T Consensus 532 ~~~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~y~~l~~ 568 (588)
T PRK13657 532 TVRNADRILVFDNGRVVESGSFDELVAR-GGRFAALLR 568 (588)
T ss_pred HHHhCCEEEEEECCEEEEeCCHHHHHHC-CChHHHHHH
Confidence 9988999999999999999999999876 456666554
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-47 Score=420.93 Aligned_cols=370 Identities=20% Similarity=0.229 Sum_probs=238.5
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHH
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYGF 81 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 81 (602)
.+.++..++|.++|+|++++|.+||+++++|++++|+++|++.++..+...+..++..++.++..++ ++.+.+.+..
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~~ 159 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAALVL 159 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567789999999999999999999999999999999999999999877666655555443332222 1222111111
Q ss_pred --HHHHHHHH---HHHHH----HHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 82 --VISLGTLF---AAKRL----HEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 82 --~~~~~~~~---~~~~~----~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
.+++..+. ...+. ..+..+...+ ....+.|...| +.+ +++.+.... ..
T Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (529)
T TIGR02868 160 AAGLLLAGFVAPLVSLRAARAAEVALARLRSQ-LYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARATG 238 (529)
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 11111 1111122222 12234444444 111 222221000 00
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++.+. ++.+...+..++..+.+....++.+..+.+|+.++++.+++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~ 318 (529)
T TIGR02868 239 LGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPRP 318 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcC
Confidence 000 001111 1222334556677778888899999999999999998665432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
...........+..+.++|+||+|+|+++ ++.+||||+||||||||+++|+|+++|++|+|.+||+|
T Consensus 319 ~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~ 398 (529)
T TIGR02868 319 EGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVS 398 (529)
T ss_pred CCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEE
Confidence 11111011111223568888888888532 37899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR- 327 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~- 327 (602)
++++ ..++|++++||||+ |++| .+++..| +.... ....++.......
T Consensus 399 i~~~-~~~lr~~i~~V~Q~-----------~~lF-------------~~TI~eN------I~~g~~~~~~e~i~~al~~a 447 (529)
T TIGR02868 399 VSSL-QDELRRRISVFAQD-----------AHLF-------------DTTVRDN------LRLGRPDATDEELWAALERV 447 (529)
T ss_pred hhhH-HHHHHhheEEEccC-----------cccc-------------cccHHHH------HhccCCCCCHHHHHHHHHHc
Confidence 9999 99999999999998 6666 3443333 11100 0011111111110
Q ss_pred HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.++ .+.. .+.+..+++.|.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 448 ~l~~~i~~lp~GldT~ige~G~~LS--GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiI 525 (529)
T TIGR02868 448 GLADWLRSLPDGLDTVLGEGGARLS--GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVI 525 (529)
T ss_pred CCHHHHHhCcccccchhccccCcCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 011 1111 123445677888888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecc
Q psy3001 405 AHRL 408 (602)
Q Consensus 405 tH~l 408 (602)
|||+
T Consensus 526 tHrl 529 (529)
T TIGR02868 526 THHL 529 (529)
T ss_pred ecCC
Confidence 9995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=415.03 Aligned_cols=408 Identities=25% Similarity=0.377 Sum_probs=265.7
Q ss_pred hhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--
Q psy3001 5 GSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY-- 79 (602)
Q Consensus 5 ~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-- 79 (602)
.+.++...+|..++++++++|..+|++.++|++++|+++|++.+++.+...+..++..++.+++.++ .+.+.+..
T Consensus 85 ~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 164 (576)
T TIGR02204 85 LGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLV 164 (576)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 4567889999999999999999999999999999999999999998876655555544433332221 11111111
Q ss_pred HHHHHHHH--HHHH-H---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh--------------
Q psy3001 80 GFVISLGT--LFAA-K---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT-------------- 128 (602)
Q Consensus 80 ~~~~~~~~--~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~-------------- 128 (602)
.+.+++.. .... + +...+..+...+ ....+.+...| +.+ +++....+.
T Consensus 165 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 165 LLAVPLVLLPILLFGRRVRKLSRESQDRIAD-AGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111 1111 1 111111211111 11122333322 111 122211000
Q ss_pred ---hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 129 ---LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 129 ---~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
+...+ .++++. +..+...+..|+..+...+..+.++..+++|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 00000 011221 12233455667888888999999999999999999876544221
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
... ......+..+.++|+||+|+|+++ +|.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 324 ~~~-~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~ 402 (576)
T TIGR02204 324 PAH-PKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGV 402 (576)
T ss_pred CCC-CccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCE
Confidence 100 000111223457777777777421 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++...+++.++|+||+ |++| ++++..|-.... +.. ..++.......
T Consensus 403 ~i~~~~~~~~~~~i~~~~Q~-----------~~lf-------------~~Ti~~Ni~~~~----~~~-~~~~~~~~l~~~ 453 (576)
T TIGR02204 403 DLRQLDPAELRARMALVPQD-----------PVLF-------------AASVMENIRYGR----PDA-TDEEVEAAARAA 453 (576)
T ss_pred EHHhcCHHHHHHhceEEccC-----------Cccc-------------cccHHHHHhcCC----CCC-CHHHHHHHHHHc
Confidence 99999999999999999998 5555 444433321100 000 11111111111
Q ss_pred H-HHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 Q-LKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~-~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
. .+.+.. .+.+..+++.|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 454 ~l~~~i~~l~~gl~t~i~~~g~~LS--gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~Iii 531 (576)
T TIGR02204 454 HAHEFISALPEGYDTYLGERGVTLS--GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLII 531 (576)
T ss_pred CcHHHHHhCCCCCCceeCCCCCcCC--HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 0 111111 133344566777888 59999999999999999999999999999999999999999988778999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
|||++.+..||+|+++++|++++.|+++++++. .+.|+.+.
T Consensus 532 tH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~~-~~~~~~l~ 572 (576)
T TIGR02204 532 AHRLATVLKADRIVVMDQGRIVAQGTHAELIAK-GGLYARLA 572 (576)
T ss_pred ecchHHHHhCCEEEEEECCEEEeeecHHHHHHc-CChHHHHH
Confidence 999999988999999999999999999998765 45555443
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-46 Score=371.83 Aligned_cols=270 Identities=29% Similarity=0.454 Sum_probs=215.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCC-CCCCcEEEeeeEEEEecC--------
Q psy3001 141 LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEW-PEKGEVEFKDYKVRYREG-------- 211 (602)
Q Consensus 141 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~vs~~~~~~-------- 211 (602)
-.+.+++..|+..+.....++.+++...++..+++..+.+..... ..+.-| ...+.+.|+||+|.|.+.
T Consensus 206 Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~p--da~~L~~~~~g~v~F~~V~F~y~~~r~iL~~is 283 (497)
T COG5265 206 NALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDAP--DAPPLWPVRLGAVAFINVSFAYDPRRPILNGIS 283 (497)
T ss_pred HHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccCC--CCccccccccceEEEEEEEeeccccchhhcCcc
Confidence 345667788888999999999999999999999988766543211 111123 245789999999999763
Q ss_pred -----CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 212 -----LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 212 -----~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
++.+|+||+||+||||++++|.++|++++|.|.+||+|+++.....+|+.||+|||+ .++|
T Consensus 284 f~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQD-----------tvLF--- 349 (497)
T COG5265 284 FTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQD-----------TVLF--- 349 (497)
T ss_pred ccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCccc-----------ceeh---
Confidence 267999999999999999999999999999999999999999999999999999998 5555
Q ss_pred cccceeeeccccceeec----ccc---cccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 287 VPVSVLYFFIQVSLIFT----EDV---KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
..++..| .+. ++.......+..+.++...|++++ ..+++.|-.+| ||||||||
T Consensus 350 ----------NDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~--------t~VgerglklS--ggekqrva 409 (497)
T COG5265 350 ----------NDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYD--------TGVGERGLKLS--GGEKQRVA 409 (497)
T ss_pred ----------hhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhh--------cccchheeecc--CchHHHHH
Confidence 2222222 000 000000122233333444444433 34788888888 59999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcch
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKA 439 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~ 439 (602)
|||+++++|+||+|||+||+||..||+.++..|+....++|.++|+||++++.+||+|+||++|+|+|.|+|++++.. +
T Consensus 410 iar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~ll~~-~ 488 (497)
T COG5265 410 IARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEELLAA-G 488 (497)
T ss_pred HHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHHHHc-C
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred hHHHHHHH
Q psy3001 440 SIFYSMAK 447 (602)
Q Consensus 440 ~~~~~~~~ 447 (602)
+.|..+|.
T Consensus 489 g~ya~mw~ 496 (497)
T COG5265 489 GLYAEMWR 496 (497)
T ss_pred ChHHHHhc
Confidence 78877763
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-46 Score=408.29 Aligned_cols=381 Identities=21% Similarity=0.279 Sum_probs=245.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--H
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF--F 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~--~ 78 (602)
..+.+...++|.++|++++++|..+|+++++|++++|+++|++.++..+...+..++..++..+..++ .+.+.+ +
T Consensus 70 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 149 (529)
T TIGR02857 70 RAAAAVKSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLI 149 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 35678889999999999999999999999999999999999999998876655555554433322221 111111 1
Q ss_pred HHHHHHHHHH---HHHHHH---HHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhh-------------
Q psy3001 79 YGFVISLGTL---FAAKRL---HEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNT------------- 128 (602)
Q Consensus 79 ~~~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~------------- 128 (602)
..+.+++..+ ...++. ..+..+...+ ....+.+...| +. .+++.+....
T Consensus 150 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (529)
T TIGR02857 150 LLLTAPLIPIFMILIGWAAQAAARKQWAALSR-LSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAF 228 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111111111 111111 1111112122 11233343333 11 1222221000
Q ss_pred ----hhhHH-------------------HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++++.+ +.+...+..|+..+...+..++.+..+.+|+.++++.+++..
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~ 308 (529)
T TIGR02857 229 LSSAVLELFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLA 308 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence 00000 0011111 122334455677777888999999999999999997543321
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.. . . ...+..+.++|+||+|+|+++ ++.++|+|+||||||||+++|+|+++|++|+|.+||.
T Consensus 309 ~~--~-~-~~~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~ 384 (529)
T TIGR02857 309 GK--A-P-VTAAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGV 384 (529)
T ss_pred CC--c-C-CCCCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCE
Confidence 10 0 0 011122467888888888531 2779999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR- 327 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 327 (602)
++.+++..++|+++++|+|+ |++| .+++..|-.... +.. ..++.......
T Consensus 385 ~i~~~~~~~lr~~i~~v~Q~-----------~~lf-------------~~ti~~Ni~~~~----~~~-~~~~i~~a~~~~ 435 (529)
T TIGR02857 385 PLADADADSWRDQIAWVPQH-----------PFLF-------------AGTIAENIRLAR----PDA-SDAEIRRALERA 435 (529)
T ss_pred ehhhCCHHHHHhheEEEcCC-----------Cccc-------------CcCHHHHHhccC----CCC-CHHHHHHHHHHc
Confidence 99999999999999999998 5555 333333211100 000 00111111100
Q ss_pred HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 328 QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 328 ~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
.+ +.++. .+.+..+++.|.++| ||||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+|
T Consensus 436 ~l~~~i~~lp~Gldt~v~e~g~~LS--gGq~qri~laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~i 513 (529)
T TIGR02857 436 GLDEFVAALPQGLDTLIGEGGAGLS--GGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLV 513 (529)
T ss_pred CcHHHHHhCcccccchhccccccCC--HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 01 11111 122334667788888 59999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEE
Q psy3001 405 AHRLNTIIDSDRVLVL 420 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l 420 (602)
|||++.+..||+|++|
T Consensus 514 tH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 514 THRLALAERADRIVVL 529 (529)
T ss_pred ecCHHHHHhCCEEEeC
Confidence 9999999889999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-46 Score=411.12 Aligned_cols=360 Identities=19% Similarity=0.213 Sum_probs=224.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|++........
T Consensus 14 ~~il~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~~~tv 81 (530)
T PRK15064 14 KPLFENISVKFGGG-NRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKLRQDQFAFEEFTV 81 (530)
T ss_pred cEeEeCCEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEEeccCCcCCCCcH
Confidence 45899999999998 999999999999999999999999999999999872 358999997421100000
Q ss_pred CCceeEeeecccceeeeccc-c-ceeecccccccccccccchhHHH------HHHHHHHHHHHhhcccCCcc-cccCCcC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQ-V-SLIFTEDVKPLIITPFCSNLQRF------YVATSRQLKRLESVSRSPIY-SHFGETV 348 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~-~~~~~~l 348 (602)
. ..+. .+......... . .............. ........ +....+..+.++.++..... ......+
T Consensus 82 ~-e~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~L 156 (530)
T PRK15064 82 L-DTVI---MGHTELWEVKQERDRIYALPEMSEEDGM-KVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEV 156 (530)
T ss_pred H-HHHH---HhhHHHHHHHHHHHHHhcccccccchHH-HHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhc
Confidence 0 0000 00000000000 0 00000000000000 00000000 00111222333344443222 2334567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV- 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~- 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++ .+.|||+|||+++.+.. ||+|++|++|+++
T Consensus 157 S--gGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~~l~~g~i~~ 232 (530)
T PRK15064 157 A--PGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMADLDYGELRV 232 (530)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEEEEeCCEEEE
Confidence 7 6999999999999999999999999999999999999999874 47899999999999988 9999999999994
Q ss_pred eecChhHHhhcchhHHHHHHHh----h-h---h-hHHHH----------------HHHhhhh-hHHHH--H-HH------
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKD----A-G---L-AWLAV----------------RLETVGN-LITFS--A-AL------ 471 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~----~-~---~-~~~~~----------------~~~~~~~-~~~~~--~-~~------ 471 (602)
..|++++++...........+. . . . .+... ..+.... ..... . ..
T Consensus 233 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (530)
T PRK15064 233 YPGNYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKAKQATSRAKQIDKIKLEEVKPSSRQNPFIRFEQD 312 (530)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHhhccccccCCccccCceeeCCCC
Confidence 6788877654322111111000 0 0 0 00000 0000000 00000 0 00
Q ss_pred H----HHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhh
Q psy3001 472 L----AVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR 539 (602)
Q Consensus 472 ~----~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr 539 (602)
. ..+.. ....+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++| +
T Consensus 313 ~~~~~~~l~~~~l~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~ 381 (530)
T PRK15064 313 KKLHRNALEVENLTKGFDNGPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSE-----------N 381 (530)
T ss_pred CCCCCceEEEEeeEEeeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-----------c
Confidence 0 00000 01124568999999999999999999999999999999999999999988 3
Q ss_pred ccceEecCCcc--ccc-cchhcccCCC--CCCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 540 SRLTIIPQDPV--LFS-GTLRLNLDPV--GESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 540 ~~i~~V~Qdp~--lf~-~Tv~~nl~~~--~~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
++++|+||++. ++. .|+++|+... ....++++.++++.+++. +..++.+.
T Consensus 382 ~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 437 (530)
T PRK15064 382 ANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRLLFSQDDIKKSVK 437 (530)
T ss_pred eEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHcCCChhHhcCccc
Confidence 57999999984 333 4899987532 223456789999999984 45444443
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=389.50 Aligned_cols=319 Identities=25% Similarity=0.371 Sum_probs=231.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~ 275 (602)
+...+++|||+..+| |++||+|+||||||||+|+|+|.|+|++|+|.++|+++.-.++. .....|..|.|++...
T Consensus 20 gV~AL~~v~l~v~~G-EV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~~V~QEl~L~--- 95 (500)
T COG1129 20 GVKALDGVSLTVRPG-EVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIATVHQELSLV--- 95 (500)
T ss_pred CceeeccceeEEeCc-eEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcEEEeechhcc---
Confidence 456899999999999 99999999999999999999999999999999999999877765 4567899999984421
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-------ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-------FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
| +-++.+++... ...+.......+.+.++. ++........-.+|
T Consensus 96 ----p----------------------~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~---lg~~~~~~~~v~~L 146 (500)
T COG1129 96 ----P----------------------NLSVAENIFLGREPTRRFGLIDRKAMRRRARELLAR---LGLDIDPDTLVGDL 146 (500)
T ss_pred ----C----------------------CccHHHHhhcccccccCCCccCHHHHHHHHHHHHHH---cCCCCChhhhhhhC
Confidence 1 11111111000 011222333333444443 22211122223345
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| .||||.|+||||+..++++||||||||+|+....+.+++.+++++ +|.++|+||||++++.. ||||.||+||+.+
T Consensus 147 s--iaqrQ~VeIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v 224 (500)
T COG1129 147 S--IAQRQMVEIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVV 224 (500)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEe
Confidence 5 699999999999999999999999999999999999999999975 58999999999999998 9999999999999
Q ss_pred eecCh-hHHhhcchhHHHHHHHh-hhhhHHHHHHHhhhhhHHHHHHHHHHHhccccc----ccceeeEEecceeEEEECC
Q psy3001 427 EFDSP-SVLMKNKASIFYSMAKD-AGLAWLAVRLETVGNLITFSAALLAVLSKETLN----AGLVGLSVSYAMQVGIVGR 500 (602)
Q Consensus 427 ~~g~~-~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~~Ge~v~ivG~ 500 (602)
...+. .+.-. ......+..+ ....+......... ...++.+.+. ..+++|++++||++||.|.
T Consensus 225 ~~~~~~~~~~~--~~lv~~MvGr~~~~~~~~~~~~~~~---------~~~l~v~~l~~~~~~~dvSf~vr~GEIlGiaGL 293 (500)
T COG1129 225 GTRPTAAETSE--DELVRLMVGRELEDLFPEPPEEGIG---------EPVLEVRNLSGGGKVRDVSFTVRAGEILGIAGL 293 (500)
T ss_pred eecccccCCCH--HHHHHHhhCcchhhhcccccccCCC---------CcEEEEecCCCCCceeCceeEEeCCcEEEEecc
Confidence 87763 44321 2222222211 11111100000000 0111112221 3469999999999999999
Q ss_pred CCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcc---c-cccchhcccC
Q psy3001 501 TGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPV---L-FSGTLRLNLD 561 (602)
Q Consensus 501 nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~---l-f~~Tv~~nl~ 561 (602)
-|||+|.|+++|+|..++.+|+|.+||++++..++ ++++..|+|||.|.- + ...+|++|+.
T Consensus 294 vGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~ 359 (500)
T COG1129 294 VGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENIT 359 (500)
T ss_pred ccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCCcHHHhee
Confidence 99999999999999999999999999999987776 578889999999983 3 4569999984
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-44 Score=395.69 Aligned_cols=382 Identities=18% Similarity=0.192 Sum_probs=241.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++.. +..++..++.+++.++ ++.+.+.+.
T Consensus 79 ~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~L~li 157 (555)
T TIGR01194 79 YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVPMFAI 157 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357788999999999999999999999999999999999999999987754 4444444333322221 122211111
Q ss_pred --HHHHHHHHH--HHHHHHHHH----HHHhhcccchhhhhcchh----HHHH---------HHHHHHhh----------h
Q psy3001 81 --FVISLGTLF--AAKRLHEKL----LKSMLRWSPLFFDTTPVG----RVLS---------RFSSDVNT----------L 129 (602)
Q Consensus 81 --~~~~~~~~~--~~~~~~~~~----~~~~~~~~~~~~~~~~~g----~~~~---------r~~~~~~~----------~ 129 (602)
+.+++..+. ...+...+. .+...+ ....+.+...| +.++ ++.+..+. .
T Consensus 158 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (555)
T TIGR01194 158 TISAIIIGTAAQLLAFMGGFKFFHAARDEEDA-FNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIEILI 236 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-HHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 111111111 111111111 111111 11123333333 1111 11110000 0
Q ss_pred h-------hHH----------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 D-------NKL----------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~-------~~~----------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
. ..+ .++++. ++.+...+..|+..+.+.+..++.+..+.+|+.++.+.+.+++.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~~~~~~~ 316 (555)
T TIGR01194 237 FIAAENFGQLLFFLLIGCALFAAAMFASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGERFNEPEP 316 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 0 000 001121 23334456678888889999999999999999999753211100
Q ss_pred c---cCCCCC---CCCCCCCcEEEeeeEEEEecC-----------------CceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 184 V---NDKKPK---DEWPEKGEVEFKDYKVRYREG-----------------LELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 184 ~---~~~~~~---~~~~~~~~i~~~~vs~~~~~~-----------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
. ...... ......+.++|+||+|+|++. +++++|+||||||||||+++|+|+++|++
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~ 396 (555)
T TIGR01194 317 ELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQE 396 (555)
T ss_pred cccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0 000000 001123457788888877421 27799999999999999999999999999
Q ss_pred ceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHH
Q psy3001 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQR 320 (602)
Q Consensus 241 G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 (602)
|+|.+||.++.+++...+|+.+++++|+ +.+| .+++..|.. +. ..
T Consensus 397 G~i~~~g~~i~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~n~~-------~~-~~--- 441 (555)
T TIGR01194 397 GEILLDGAAVSADSRDDYRDLFSAIFAD-----------FHLF-------------DDLIGPDEG-------EH-AS--- 441 (555)
T ss_pred cEEEECCEECCCCCHHHHHhhCcEEccC-----------hhhh-------------hhhhhcccc-------cc-hh---
Confidence 9999999999999999999999999998 4444 333322210 00 00
Q ss_pred HHHHHHHHHHHHhhcccCCccc------ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHH-
Q psy3001 321 FYVATSRQLKRLESVSRSPIYS------HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR- 393 (602)
Q Consensus 321 ~~~~~~~~~~~l~~~~~~~~~~------~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~- 393 (602)
.++..+.++..+..+... +...++| ||||||++||||++++|++||||||||+||+++++.+.+.+.
T Consensus 442 ----~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LS--gGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~ 515 (555)
T TIGR01194 442 ----LDNAQQYLQRLEIADKVKIEDGGFSTTTALS--TGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515 (555)
T ss_pred ----HHHHHHHHHHcCCchhhcccccccCCcccCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 011111112222222111 1124566 699999999999999999999999999999999999987653
Q ss_pred Hh-ccccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 394 SE-FAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 394 ~~-~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
.. .+++|+|+||||++.+..||+|++|++|++++.
T Consensus 516 ~~~~~~~tiiiisH~~~~~~~~d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551 (555)
T ss_pred HHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 33 357999999999998888999999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-44 Score=393.44 Aligned_cols=378 Identities=17% Similarity=0.216 Sum_probs=238.5
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFYG 80 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~ 80 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.+...+.. +..++..++.+++.++ ++.+.+.+.
T Consensus 74 ~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~~~l~li 152 (547)
T PRK10522 74 TLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLSPKMLLV 152 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 356788999999999999999999999999999999999999999876543 3444444333322221 111111111
Q ss_pred --HHHHHHHH---HHHHHH---HHHHHHHhhcccchhhhhcchh-H------------HHHHHHHHHhh----------h
Q psy3001 81 --FVISLGTL---FAAKRL---HEKLLKSMLRWSPLFFDTTPVG-R------------VLSRFSSDVNT----------L 129 (602)
Q Consensus 81 --~~~~~~~~---~~~~~~---~~~~~~~~~~~~~~~~~~~~~g-~------------~~~r~~~~~~~----------~ 129 (602)
+.+++..+ ...++. ..+..+...+ ....+.+...| + ..+++...... .
T Consensus 153 ~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (547)
T PRK10522 153 TAIWMAVTIWGGFVLVARVYKHMATLRETEDK-LYNDYQTVLEGRKELTLNRERAEYVFENEYEPDAQEYRHHIIRADTF 231 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhhHhhhccHHHHHHHHHHHHhHHHHHHHhhhHHHHHH
Confidence 11111111 111111 1111111111 11122222222 0 01111111000 0
Q ss_pred hhH-------HHH-HHH---------------H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 130 DNK-------LTL-SVQ---------------Q---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 130 ~~~-------~~~-~~~---------------~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
... ... ..+ . +..+...+..|+..+......++....+.+|+.++.+.+++.+.
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 232 HLSAVNWSNIMMLGAIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 000 000 000 0 01111223456777788888899999999999998754432211
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.. .. ..+..+.++|+||+|+|+++ ++.+||+|+||||||||+++|+|+++|++|+|.+||+++
T Consensus 312 ~~-~~---~~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~ 387 (547)
T PRK10522 312 PR-PQ---AFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (547)
T ss_pred cc-cc---ccCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEC
Confidence 10 00 01112357777777777431 278999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (602)
.+++...+|+++++++|+ +.+| .+++..|..- ... .+..+
T Consensus 388 ~~~~~~~~~~~i~~v~q~-----------~~lf-------------~~ti~~n~~~---------~~~-------~~~~~ 427 (547)
T PRK10522 388 TAEQPEDYRKLFSAVFTD-----------FHLF-------------DQLLGPEGKP---------ANP-------ALVEK 427 (547)
T ss_pred CCCCHHHHhhheEEEecC-----------hhHH-------------HHhhccccCc---------hHH-------HHHHH
Confidence 999999999999999998 3333 3333222100 000 00111
Q ss_pred HHhhcccCCcc--cc---cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEE
Q psy3001 331 RLESVSRSPIY--SH---FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLT 403 (602)
Q Consensus 331 ~l~~~~~~~~~--~~---~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~ 403 (602)
.++..+..... .+ .|.++| ||||||++||||++++|++||||||||+||+++++.+.+.+.+.. .++|+|+
T Consensus 428 ~~~~~~l~~~~~~~~~~~~G~~LS--gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~ 505 (547)
T PRK10522 428 WLERLKMAHKLELEDGRISNLKLS--KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFA 505 (547)
T ss_pred HHHHcCCchhhhccccCCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEE
Confidence 11122221111 11 255677 699999999999999999999999999999999999998886543 4799999
Q ss_pred eeecccccccCCeEEEEeCceEEeec
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
||||++.+..||+|++|++|++++..
T Consensus 506 itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 506 ISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred EEechHHHHhCCEEEEEECCEEEEec
Confidence 99999998889999999999999774
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=391.85 Aligned_cols=257 Identities=21% Similarity=0.269 Sum_probs=194.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEecC------------
Q psy3001 144 PFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG------------ 211 (602)
Q Consensus 144 ~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~------------ 211 (602)
...+..|+..+...+..++.+..+.+|+.++++.+++.+.. ... .+..+.++++|++|+|+++
T Consensus 267 ~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~--~~~---~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i 341 (544)
T TIGR01842 267 VGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA--MPL---PEPEGHLSVENVTIVPPGGKKPTLRGISFRL 341 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC--CCC---CCCCCeEEEEEEEEEcCCCCccccccceEEE
Confidence 34556678888889999999999999999999765543211 000 0122457777777777431
Q ss_pred --CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccc
Q psy3001 212 --LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPV 289 (602)
Q Consensus 212 --~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~ 289 (602)
++.++|+|+||||||||+++|+|+++|++|+|.+||+++.+++...+|+.++++||+ |++|
T Consensus 342 ~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~-----------~~lf------ 404 (544)
T TIGR01842 342 QAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQD-----------VELF------ 404 (544)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCC-----------cccc------
Confidence 278999999999999999999999999999999999999999999999999999998 4444
Q ss_pred ceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHh
Q psy3001 290 SVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALL 365 (602)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~ 365 (602)
.+++..|-.. .......++...... ...+.++.+ +.+...++.+.++| ||||||++||||++
T Consensus 405 -------~~ti~~Ni~~-----~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LS--gGq~qrl~lARall 470 (544)
T TIGR01842 405 -------PGTVAENIAR-----FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLS--GGQRQRIALARALY 470 (544)
T ss_pred -------cccHHHHHhc-----cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCC--HHHHHHHHHHHHHh
Confidence 2232222110 000011111111111 111122222 33455677788888 59999999999999
Q ss_pred hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 366 RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
++|++||||||||+||+++++.+.+.+++.. +++|+|+||||++.+..||+|++|++|++++.|+++++.+
T Consensus 471 ~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 471 GDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred cCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 9999999999999999999999999998875 5799999999999887799999999999999999988754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=399.20 Aligned_cols=353 Identities=21% Similarity=0.220 Sum_probs=221.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++....
T Consensus 20 ~~il~~vs~~i~~G-e~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~v~Q~~~~~~---- 83 (556)
T PRK11819 20 KQILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGYLPQEPQLDP---- 83 (556)
T ss_pred CeeeeCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEecCCCCCC----
Confidence 45899999999998 99999999999999999999999999999999975 246999999843110
Q ss_pred CCceeEeeecccceeeeccccc---eeecccccccccccc---------cchhHHHH------HHHHHHHHHHhhcccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVS---LIFTEDVKPLIITPF---------CSNLQRFY------VATSRQLKRLESVSRSP 339 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~~------~~~~~~~~~l~~~~~~~ 339 (602)
.+ .+.....+...... ..+. .......... ...+.... ....+..+.++.++...
T Consensus 84 ---~~---tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~ 156 (556)
T PRK11819 84 ---EK---TVRENVEEGVAEVKAALDRFN-EIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPP 156 (556)
T ss_pred ---CC---cHHHHHHHhhHHHHHHHHHHH-HHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCc
Confidence 00 00000000000000 0000 0000000000 00000000 00112222233333322
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
.......+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++.. .|||+|||+++++.. ||+|+
T Consensus 157 -~~~~~~~LS--gGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 157 -WDAKVTKLS--GGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred -ccCchhhcC--HHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 334445677 699999999999999999999999999999999999999998863 599999999999988 99999
Q ss_pred EEeCceEE-eecChhHHhhcchhHHHHHHHh---------hhhhHHHH--------------HHHhhh--------hhHH
Q psy3001 419 VLDKGLVV-EFDSPSVLMKNKASIFYSMAKD---------AGLAWLAV--------------RLETVG--------NLIT 466 (602)
Q Consensus 419 ~l~~G~i~-~~g~~~~l~~~~~~~~~~~~~~---------~~~~~~~~--------------~~~~~~--------~~~~ 466 (602)
+|++|+++ ..|+++++.+..........+. ....|... +.+... ....
T Consensus 232 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSWLEQKAKRLAQEEKQEAARQKALKRELEWVRQSPKARQAKSKARLARYEELLSEEYQKRNETNE 311 (556)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhcccccccCCCce
Confidence 99999986 5677776654322111000000 00001000 000000 0000
Q ss_pred H--HHH---HHHHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 467 F--SAA---LLAVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 467 ~--~~~---~~~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
+ ... ....+.. ....+.++||+|++||++||+|+||||||||+++|+|+++|++|+|.+++.
T Consensus 312 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~----- 386 (556)
T PRK11819 312 IFIPPGPRLGDKVIEAENLSKSFGDRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGET----- 386 (556)
T ss_pred eecCCCCCCCCeEEEEEeEEEEECCeeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----
Confidence 0 000 0000000 111345789999999999999999999999999999999999999999541
Q ss_pred ChhhhhccceEecCCc-cccc-cchhcccCCCC-----CCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 534 GLHTLRSRLTIIPQDP-VLFS-GTLRLNLDPVG-----ESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 534 ~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~~~~-----~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
.+++|+||++ .++. -||++|+.... ...+++..++++.+++.+ ..++.|.
T Consensus 387 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 444 (556)
T PRK11819 387 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVG 444 (556)
T ss_pred ------eEEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhCCCChhHhcCchh
Confidence 2699999997 5654 49999985321 112345678899999863 3344433
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=378.00 Aligned_cols=327 Identities=25% Similarity=0.336 Sum_probs=226.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~ 275 (602)
+.+..+|||+++.+| |++||+|+||||||||+++|.|+|+|++|+|.++|+++.--++. .++..||+|.|++...
T Consensus 16 ~~~And~V~l~v~~G-eIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv--- 91 (501)
T COG3845 16 GVVANDDVSLSVKKG-EIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLV--- 91 (501)
T ss_pred CEEecCceeeeecCC-cEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCCcEEeeccccc---
Confidence 678899999999998 99999999999999999999999999999999999998866655 6788999999973211
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
.+-++.+++.... ..+.........+..+ .++..-.....-..+|
T Consensus 92 --------------------------~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~---~yGl~vdp~~~V~dLs 142 (501)
T COG3845 92 --------------------------PTLTVAENIILGLEPSKGGLIDRRQARARIKELSE---RYGLPVDPDAKVADLS 142 (501)
T ss_pred --------------------------cccchhhhhhhcCccccccccCHHHHHHHHHHHHH---HhCCCCCccceeecCC
Confidence 0111111111111 0111111122222222 2222211222333455
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
.||||||.|-+||+++|++|||||||+.|-|...+.+++.++++. +|+|||+|||++.++.. |||+.||+.|+++.
T Consensus 143 --VG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvg 220 (501)
T COG3845 143 --VGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVG 220 (501)
T ss_pred --cchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEe
Confidence 699999999999999999999999999999999999999999875 58999999999999998 99999999999875
Q ss_pred ecC-hhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh-cccccccceeeEEecceeEEEECCCCCCh
Q psy3001 428 FDS-PSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS-KETLNAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 428 ~g~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
... ..+.- .......+.......... +.........+......+.. .....+.++||++++||++||.|-.|.|.
T Consensus 221 t~~~~~~~t--~~ela~lMvG~~v~~~~~-~~~~~pg~~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ 297 (501)
T COG3845 221 TVDPVAETT--EEELAELMVGREVVLRVV-KPPSTPGEVVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQ 297 (501)
T ss_pred eecCCCCCC--HHHHHHHhcCCccccccc-cCCCCCCCeEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCH
Confidence 544 21210 011111111110000000 00000000000000000001 11233457999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECCeec-CCCChhhhh-ccceEecCCcc----ccccchhcccC
Q psy3001 506 SSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLR-SRLTIIPQDPV----LFSGTLRLNLD 561 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g~~i-~~~~~~~lr-~~i~~V~Qdp~----lf~~Tv~~nl~ 561 (602)
+.|+.+|+|+.+|.+|+|.++|+|+ ...+++++| ..++|||+|.. ...-|+.+|+.
T Consensus 298 ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~sl~eN~v 359 (501)
T COG3845 298 SELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLV 359 (501)
T ss_pred HHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCccccCccHHHHhh
Confidence 9999999999999999999999997 666776654 47999999994 24568999974
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-44 Score=393.79 Aligned_cols=346 Identities=19% Similarity=0.226 Sum_probs=216.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++.....
T Consensus 18 ~~il~~is~~i~~G-e~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~v~Q~~~~~~~--- 82 (552)
T TIGR03719 18 KEILKDISLSFFPG-AKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGYLPQEPQLDPT--- 82 (552)
T ss_pred CeeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEEEeccCCCCCC---
Confidence 45799999999998 99999999999999999999999999999999875 2469999997431100
Q ss_pred CCceeEeeecccceeeeccccce---eeccccccccccccc---------chhHHHH------HHHHHHHHHHhhcccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSL---IFTEDVKPLIITPFC---------SNLQRFY------VATSRQLKRLESVSRSP 339 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~---------~~~~~~~------~~~~~~~~~l~~~~~~~ 339 (602)
+ ++.....+....... .+. ........... ..+.+.. ....+..+.++.++...
T Consensus 83 ----~---tv~e~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 154 (552)
T TIGR03719 83 ----K---TVRENVEEGVAEIKDALDRFN-EISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPP 154 (552)
T ss_pred ----C---cHHHHHHHhhHHHHHHHHHHH-HHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCc
Confidence 0 000000000000000 000 00000000000 0000000 00011112222222221
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
.......+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++.. .|||+|||+++.+.. ||+++
T Consensus 155 -~~~~~~~LS--gGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 155 -WDADVTKLS--GGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred -ccCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 233445677 699999999999999999999999999999999999999998763 599999999999988 99999
Q ss_pred EEeCceEE-eecChhHHhhcchhHHHHHH-------Hh--hhhhHHHH-------HHHhhhhhH-HH-------------
Q psy3001 419 VLDKGLVV-EFDSPSVLMKNKASIFYSMA-------KD--AGLAWLAV-------RLETVGNLI-TF------------- 467 (602)
Q Consensus 419 ~l~~G~i~-~~g~~~~l~~~~~~~~~~~~-------~~--~~~~~~~~-------~~~~~~~~~-~~------------- 467 (602)
+|++|+++ ..|+++++.+.......... +. ....|... ......... ..
T Consensus 230 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLEQKEKRLEQEEKEESARQKALKRELEWVRSSPKARQAKSKARLARYEELLSQEFQKRNETAE 309 (552)
T ss_pred EEECCEEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhcccccCCCce
Confidence 99999976 56887776543211110000 00 00001000 000000000 00
Q ss_pred ---HHHH---HHHHh--------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 468 ---SAAL---LAVLS--------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 468 ---~~~~---~~~~~--------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
.... ...+. .....+.++||+|++|+++||+|+||||||||+++|+|+++|++|+|.+++ +
T Consensus 310 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~---- 384 (552)
T TIGR03719 310 IYIPPGPRLGDKVIEAENLSKGFGDKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T---- 384 (552)
T ss_pred eecCCCCCCCCeEEEEeeEEEEECCeeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----
Confidence 0000 00000 011134568999999999999999999999999999999999999999954 1
Q ss_pred ChhhhhccceEecCCcc-ccc-cchhcccCCCC---C--CcHHHHHHHHHHcCCCc
Q psy3001 534 GLHTLRSRLTIIPQDPV-LFS-GTLRLNLDPVG---E--SSDEAIWKALELAHLNT 582 (602)
Q Consensus 534 ~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl~~~~---~--~~~~~i~~al~~~~l~~ 582 (602)
.+|+|+||++. ++. .|+++|+.... . ..+++..++++.+++.+
T Consensus 385 ------~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~ 434 (552)
T TIGR03719 385 ------VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRFNFKG 434 (552)
T ss_pred ------eEEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhCCCCh
Confidence 26999999974 554 49999985321 1 12345677899999864
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-45 Score=333.39 Aligned_cols=212 Identities=25% Similarity=0.416 Sum_probs=172.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..-.++++|+++.+| |+++|+||||||||||+++|+|+.+|++|+|.++|.++... +...+|+++|+|+|+.
T Consensus 14 ~~~VLkgi~l~v~~G-evv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f------ 86 (240)
T COG1126 14 DKEVLKGISLSVEKG-EVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQF------ 86 (240)
T ss_pred CeEEecCcceeEcCC-CEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccc------
Confidence 345799999999998 99999999999999999999999999999999999876433 6888999999999962
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
.+|. .-+...| ....+....-....++..++.+.++.+++......++..||| |||
T Consensus 87 -----nLFP------------HlTvleN-----v~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSG--GQq 142 (240)
T COG1126 87 -----NLFP------------HLTVLEN-----VTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSG--GQQ 142 (240)
T ss_pred -----cccc------------cchHHHH-----HHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCc--HHH
Confidence 2221 1111111 000111111111223445566677788888888999999995 999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||||||||+.+|+++++|||||+|||+...++.+.++++. +|.|.|+|||.+.++.+ ||||+.|++|++++.|++++
T Consensus 143 QRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~ 222 (240)
T COG1126 143 QRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEE 222 (240)
T ss_pred HHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHH
Confidence 99999999999999999999999999999999999999875 57999999999999999 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++.++.
T Consensus 223 ~f~~p~ 228 (240)
T COG1126 223 FFDNPK 228 (240)
T ss_pred HhcCCC
Confidence 988754
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-44 Score=403.62 Aligned_cols=349 Identities=19% Similarity=0.225 Sum_probs=212.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.. .+++++|.+......
T Consensus 16 ~~il~~is~~i~~G-e~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~l~q~~~~~~~~-- 81 (635)
T PRK11147 16 APLLDNAELHIEDN-ERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVARLQQDPPRNVEG-- 81 (635)
T ss_pred ceeEeCcEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEEeccCCCCCCCC--
Confidence 45899999999998 9999999999999999999999999999999998731 133444432100000
Q ss_pred CCceeEeeecccceeeeccc-c---ce-eecccccccccccccchhHHH------HHHHHHHHHHHhhcccCCcccccCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQ-V---SL-IFTEDVKPLIITPFCSNLQRF------YVATSRQLKRLESVSRSPIYSHFGE 346 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~-~---~~-~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (602)
..+-+............. . .. .......+++. ........ +....+..+.+..++.. ......
T Consensus 82 --~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~~~~~~~~~l~~lgl~--~~~~~~ 155 (635)
T PRK11147 82 --TVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLN--ELAKLQEQLDHHNLWQLENRINEVLAQLGLD--PDAALS 155 (635)
T ss_pred --CHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHH--HHHHHHHHHHhcCcccHHHHHHHHHHhCCCC--CCCchh
Confidence 000000000000000000 0 00 00000000000 00000000 00111222223333332 133345
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| |||||||+|||||+.+|++|||||||++||+.+..++.+.|+++. .|||+|||+++++.. ||+|++|++|++
T Consensus 156 ~LS--gGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~~~d~i~~L~~G~i 231 (635)
T PRK11147 156 SLS--GGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRNMATRIVDLDRGKL 231 (635)
T ss_pred hcC--HHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHHhcCeEEEEECCEE
Confidence 566 699999999999999999999999999999999999999998873 599999999999988 999999999999
Q ss_pred Eee-cChhHHhhcchhHHHHH-------HHh--hhhhHHHH-----------H---HHhhh--h--------hHHH--HH
Q psy3001 426 VEF-DSPSVLMKNKASIFYSM-------AKD--AGLAWLAV-----------R---LETVG--N--------LITF--SA 469 (602)
Q Consensus 426 ~~~-g~~~~l~~~~~~~~~~~-------~~~--~~~~~~~~-----------~---~~~~~--~--------~~~~--~~ 469 (602)
+.+ |++.+++.......... .+. ....|... + .+... . ...+ ..
T Consensus 232 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (635)
T PRK11147 232 VSYPGNYDQYLLEKEEALRVEELQNAEFDRKLAQEEVWIRQGIKARRTRNEGRVRALKALRRERSERREVMGTAKMQVEE 311 (635)
T ss_pred EEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhhhhccccccCCceeEEeCC
Confidence 854 77776654322111000 000 00011100 0 00000 0 0000 00
Q ss_pred --H-HHHHHhc--------ccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh
Q psy3001 470 --A-LLAVLSK--------ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538 (602)
Q Consensus 470 --~-~~~~~~~--------~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l 538 (602)
. ....+.. ....+.++||+|++|+++||+|+||||||||+++|+|+++|++|+|.+ |.+
T Consensus 312 ~~~~~~~~l~~~~l~~~~~~~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~--------- 381 (635)
T PRK11147 312 ASRSGKIVFEMENVNYQIDGKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK--------- 381 (635)
T ss_pred CCCCCCceEEEeeeEEEECCeEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC---------
Confidence 0 0000000 011235689999999999999999999999999999999999999999 432
Q ss_pred hccceEecCCc-ccccc-chhcccCCCC-----CCcHHHHHHHHHHcCCC
Q psy3001 539 RSRLTIIPQDP-VLFSG-TLRLNLDPVG-----ESSDEAIWKALELAHLN 581 (602)
Q Consensus 539 r~~i~~V~Qdp-~lf~~-Tv~~nl~~~~-----~~~~~~i~~al~~~~l~ 581 (602)
-+|+|++|++ .++.. ||.+|+.... ....+++.++++.+++.
T Consensus 382 -~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~ 430 (635)
T PRK11147 382 -LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDFLFH 430 (635)
T ss_pred -cEEEEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhcCCC
Confidence 2699999987 45544 9999985321 11245678888888885
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-44 Score=396.47 Aligned_cols=349 Identities=21% Similarity=0.259 Sum_probs=217.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| +++||+|+||||||||+|+|+|+++|++|+|.++|.. .++|++|++....
T Consensus 14 ~~~l~~vs~~i~~G-e~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~~q~~~~~~---- 77 (638)
T PRK10636 14 RVLLDNATATINPG-QKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWVNQETPALP---- 77 (638)
T ss_pred ceeecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEEecCCCCCC----
Confidence 45899999999998 9999999999999999999999999999999998742 3566666421000
Q ss_pred CCceeEeeecccceeeeccccceee---ccccccc---ccccccchhHHH------HHHHHHHHHHHhhcccC-Cccccc
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIF---TEDVKPL---IITPFCSNLQRF------YVATSRQLKRLESVSRS-PIYSHF 344 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---~~~~~~~~~~~~------~~~~~~~~~~l~~~~~~-~~~~~~ 344 (602)
...+.+ ..+....+ ...+... ............ +....+....+..++.. ......
T Consensus 78 -~~~~~~----------v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~ 146 (638)
T PRK10636 78 -QPALEY----------VIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERP 146 (638)
T ss_pred -CCHHHH----------HHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCc
Confidence 000000 00000000 0000000 000000000000 00111222333344443 233444
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| ||||||++|||||+.+|++|||||||++||+.+..++.+.|++. +.|||+|||+++++.. ||+|++|++|
T Consensus 147 ~~~LS--gGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G 222 (638)
T PRK10636 147 VSDFS--GGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQ 222 (638)
T ss_pred hhhcC--HHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 55677 69999999999999999999999999999999999999999876 4699999999999988 9999999999
Q ss_pred eEEe-ecChhHHhhcchhHHH-------HHHHh--hhhhHHHH-------------HH---Hhhh--------hhHHHH-
Q psy3001 424 LVVE-FDSPSVLMKNKASIFY-------SMAKD--AGLAWLAV-------------RL---ETVG--------NLITFS- 468 (602)
Q Consensus 424 ~i~~-~g~~~~l~~~~~~~~~-------~~~~~--~~~~~~~~-------------~~---~~~~--------~~~~~~- 468 (602)
+++. .|+++.+......... ...+. ....|... +. +... ....+.
T Consensus 223 ~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~a~~~~~a~~r~~~l~~~~~~~~~~~~~~~~~~~ 302 (638)
T PRK10636 223 SLFEYTGNYSSFEVQRATRLAQQQAMYESQQERVAHLQSYIDRFRAKATKAKQAQSRIKMLERMELIAPAHVDNPFHFSF 302 (638)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhcccccccCCceeEec
Confidence 9975 4666655432111100 00000 00011100 00 0000 000000
Q ss_pred -HH---HHHHHh--------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh
Q psy3001 469 -AA---LLAVLS--------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH 536 (602)
Q Consensus 469 -~~---~~~~~~--------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~ 536 (602)
.. ....+. .....+.++||+|.+|+++||+||||||||||+++|+|+++|++|+|.+++.
T Consensus 303 ~~~~~~~~~~l~~~~l~~~y~~~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-------- 374 (638)
T PRK10636 303 RAPESLPNPLLKMEKVSAGYGDRIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-------- 374 (638)
T ss_pred CCCccCCCceEEEEeeEEEeCCeeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC--------
Confidence 00 000000 0111235689999999999999999999999999999999999999999741
Q ss_pred hhhccceEecCCc--cccc-cchhcccC-CCCCCcHHHHHHHHHHcCCCc-cccccc
Q psy3001 537 TLRSRLTIIPQDP--VLFS-GTLRLNLD-PVGESSDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 537 ~lr~~i~~V~Qdp--~lf~-~Tv~~nl~-~~~~~~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
.+++|+||++ .+.. .|+.+++. ......++++.++|+.+++.. ...+.+
T Consensus 375 ---~~igy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~l~~~~~~~~~ 428 (638)
T PRK10636 375 ---IKLGYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGFGFQGDKVTEET 428 (638)
T ss_pred ---EEEEEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHcCCChhHhcCch
Confidence 2699999986 2332 37777653 222334567899999999853 444433
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-43 Score=378.18 Aligned_cols=340 Identities=22% Similarity=0.287 Sum_probs=222.1
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.+...|+|+++++.+| +++||||+||||||||+|+|+|...|++|+|...+. ..++|++|++...-.-
T Consensus 14 g~~~l~~~~~l~~~~G-~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 14 GDRPLLENVSLTLNPG-ERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRVGYLSQEPPLDPEK 81 (530)
T ss_pred CCceeecCCcceeCCC-CEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceEEEeCCCCCcCCCc
Confidence 3567899999999998 999999999999999999999999999999998752 2589999974321100
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccc----------cccc---ccchhHHH------HHHHHHHHHHHhhcc
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----------IITP---FCSNLQRF------YVATSRQLKRLESVS 336 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~---~~~~~~~~------~~~~~~~~~~l~~~~ 336 (602)
+++ ...+....++... .... ....++.. +....++...+..++
T Consensus 82 ----tv~--------------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 82 ----TVL--------------DYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred ----cHH--------------HHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 000 0000000000000 0000 00000000 111122223333333
Q ss_pred cCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CC
Q psy3001 337 RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SD 415 (602)
Q Consensus 337 ~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d 415 (602)
..+. ...-.++| ||||.|++|||||+.+|++|+|||||+|||.++..|+.+.|.++. | |+|+||||.+++.. |+
T Consensus 144 ~~~~-~~~~~~LS--GG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t 218 (530)
T COG0488 144 FPDE-DRPVSSLS--GGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVAT 218 (530)
T ss_pred CCcc-cCchhhcC--HHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhh
Confidence 3322 23334556 699999999999999999999999999999999999999998654 4 99999999999999 99
Q ss_pred eEEEEeCceEEee-cChhHHhhcchhHHHHHHH---------hhhhhHHHHH----------------HHhhhh------
Q psy3001 416 RVLVLDKGLVVEF-DSPSVLMKNKASIFYSMAK---------DAGLAWLAVR----------------LETVGN------ 463 (602)
Q Consensus 416 ~i~~l~~G~i~~~-g~~~~l~~~~~~~~~~~~~---------~~~~~~~~~~----------------~~~~~~------ 463 (602)
+|+.++.|++..+ |+++..++.+........+ .....|.... .+....
T Consensus 219 ~I~~ld~g~l~~y~Gny~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~i~r~~~~~~~~k~a~sr~k~l~k~~~~~~~~~ 298 (530)
T COG0488 219 HILELDRGKLTPYKGNYSSYLEQKAERLRQEAAAYEKQQKELAKEQEWIRRGKAAASKAKKAKSRIKRLEKLEARLAEER 298 (530)
T ss_pred heEEecCCceeEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhhhhcc
Confidence 9999999999766 4555555432211111000 0001111100 000000
Q ss_pred ------hH--HHH--------------HHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 464 ------LI--TFS--------------AALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 464 ------~~--~~~--------------~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
.. .+. .....+. .......+++|.+.+|++|||+||||+|||||+|+|+|...|.+|
T Consensus 299 ~~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~-~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 299 PVEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYD-GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred cccccccceeeccCCcccCCCeeEEEeccccccC-CCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 00 000 0000000 001223468999999999999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhccceEecCCc-cccc-cchhcccCCCC-CCcHHHHHHHHHHcCCCc
Q psy3001 522 TIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS-GTLRLNLDPVG-ESSDEAIWKALELAHLNT 582 (602)
Q Consensus 522 ~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~~~~-~~~~~~i~~al~~~~l~~ 582 (602)
+|.++- .-++||.+|+. .++. .|+.+++.... ...+.++...|..+++..
T Consensus 378 ~v~~g~-----------~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~ 430 (530)
T COG0488 378 TVKVGE-----------TVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTG 430 (530)
T ss_pred eEEeCC-----------ceEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCCh
Confidence 999874 23799999998 4443 37888886443 334788999999999875
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-44 Score=393.44 Aligned_cols=336 Identities=18% Similarity=0.226 Sum_probs=216.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-----------ECCeecCCCChHH--Hhhcccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-----------IDGVDIRTLGLHT--LRSRLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-----------i~g~~~~~~~~~~--~~~~i~~v 265 (602)
..+++++ ...+| +++||+|+||||||||+|+|+|+++|++|+|. ++|.++.++.... .+..+++.
T Consensus 88 ~~L~~l~-~i~~G-ev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~ 165 (590)
T PRK13409 88 FKLYGLP-IPKEG-KVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHK 165 (590)
T ss_pred eeEecCC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeec
Confidence 5788888 67676 99999999999999999999999999999997 8888775432111 11235555
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|..... |.++ ..++.+.+ . ......+..+.++.++.........
T Consensus 166 ~q~~~~~-------p~~~-------------------~~tv~e~l--------~-~~~~~~~~~~~l~~l~l~~~~~~~~ 210 (590)
T PRK13409 166 PQYVDLI-------PKVF-------------------KGKVRELL--------K-KVDERGKLDEVVERLGLENILDRDI 210 (590)
T ss_pred ccchhhh-------hhhh-------------------cchHHHHH--------H-hhhHHHHHHHHHHHcCCchhhcCCh
Confidence 6632110 1111 11111110 0 0011112223333444444445555
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc-
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG- 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G- 423 (602)
..|| ||||||++|||||+++|++|+|||||++||+.+..++.+.++++.+++|+|+|||+++.+.. ||++++|+++
T Consensus 211 ~~LS--gGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~ 288 (590)
T PRK13409 211 SELS--GGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP 288 (590)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 6777 69999999999999999999999999999999999999999987558999999999999988 9999999863
Q ss_pred -eEEeecChhHHhhcchhHHHH-HHHhhhhhHH----HHHH-Hhh----hh-hHHHHHHHHHHHhcccccccceeeEEec
Q psy3001 424 -LVVEFDSPSVLMKNKASIFYS-MAKDAGLAWL----AVRL-ETV----GN-LITFSAALLAVLSKETLNAGLVGLSVSY 491 (602)
Q Consensus 424 -~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~----~~~~-~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~ 491 (602)
..-....+...... ...+.. .......... .... .+. .. .+.+......+ ....+..++|++++
T Consensus 289 g~~g~~~~~~~~~~~-i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ls~~~---~~~~l~~~s~~i~~ 364 (590)
T PRK13409 289 GAYGVVSKPKGVRVG-INEYLKGYLPEENMRIRPEPIEFEERPPRDESERETLVEYPDLTKKL---GDFSLEVEGGEIYE 364 (590)
T ss_pred cccceecchhHHHHh-HHHHHHhcchhhhhhccccCcceecCCCccccCCceEEEEcceEEEE---CCEEEEecceEECC
Confidence 11000011111000 000100 0000000000 0000 000 00 00011110001 11124568899999
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCCC-CC-cH
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPVG-ES-SD 568 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~~-~~-~~ 568 (602)
||++||+|+||||||||+++|+|+++|++|+|.++ .+++|+||++.+ +..||++|+.... .. ..
T Consensus 365 Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~ 431 (590)
T PRK13409 365 GEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPDYDGTVEDLLRSITDDLGSS 431 (590)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCCCCCcHHHHHHHHhhhcChH
Confidence 99999999999999999999999999999999985 159999999865 4569999986321 11 23
Q ss_pred HHHHHHHHHcCCCccccccccC
Q psy3001 569 EAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 569 ~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.+.++++.+++.+..++.|..
T Consensus 432 ~~~~~~L~~l~l~~~~~~~~~~ 453 (590)
T PRK13409 432 YYKSEIIKPLQLERLLDKNVKD 453 (590)
T ss_pred HHHHHHHHHCCCHHHHhCCccc
Confidence 4578899999998766655543
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-43 Score=335.81 Aligned_cols=211 Identities=30% Similarity=0.409 Sum_probs=173.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|||+++++| ++.||+|.||||||||++++.++..|++|+|.+||+++..++.. ..|++||+++|++..+-
T Consensus 19 ~~al~~vsL~I~~G-eI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLs- 96 (339)
T COG1135 19 VTALDDVSLEIPKG-EIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLS- 96 (339)
T ss_pred eeeeccceEEEcCC-cEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccc-
Confidence 56899999999998 99999999999999999999999999999999999998887655 56789999999732110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
..++.+++..+..-.-........+..+.++.+++......++.+||| ||
T Consensus 97 ----------------------------srTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSG--GQ 146 (339)
T COG1135 97 ----------------------------SRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSG--GQ 146 (339)
T ss_pred ----------------------------cchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCc--ch
Confidence 111122221111100011223344556667788888888999999995 99
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||+|||||+.+|+||+.|||||+|||+|.+.|.+.|++..+ |.||++|||.++.++. |||+.||++|++++.|+.
T Consensus 147 KQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v 226 (339)
T COG1135 147 KQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTV 226 (339)
T ss_pred hhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccH
Confidence 9999999999999999999999999999999999999998754 7999999999999999 999999999999999999
Q ss_pred hHHhhcchh
Q psy3001 432 SVLMKNKAS 440 (602)
Q Consensus 432 ~~l~~~~~~ 440 (602)
.+++.++..
T Consensus 227 ~~vF~~Pk~ 235 (339)
T COG1135 227 SEVFANPKH 235 (339)
T ss_pred HHhhcCcch
Confidence 999987644
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=388.57 Aligned_cols=360 Identities=18% Similarity=0.193 Sum_probs=214.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc---CCCCceEEECCeecCCC--Ch------------HHHhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII---EPADGTIIIDGVDIRTL--GL------------HTLRSR 261 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~---~~~~G~I~i~g~~~~~~--~~------------~~~~~~ 261 (602)
..|+|+||++.+| +++||||+||||||||+++|+|.. .|.+|+|.+.++++... +. ..+++.
T Consensus 191 ~ll~~isl~i~~G-e~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~v~~~~~~~~~~~~~~ 269 (718)
T PLN03073 191 DLIVDASVTLAFG-RHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEE 269 (718)
T ss_pred EEEECCEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHHHHHhhHHHHHHHHHH
Confidence 3566666666666 899999999999999999999964 58899998755543211 11 113455
Q ss_pred cceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccc--hhHHHHHHHHHHHHHHhhcccC-
Q psy3001 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS--NLQRFYVATSRQLKRLESVSRS- 338 (602)
Q Consensus 262 i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~- 338 (602)
+++++|++..+..... ...+ .....-...+.+...+ ..... .....+....+....+..++..
T Consensus 270 ~~~~~q~~~l~~~~~~--~~~~-----------~~~~~~~~~~~~~~r~-~~~~~~~~~~~~~~~~~r~~~~L~~lgl~~ 335 (718)
T PLN03073 270 AQLVAQQRELEFETET--GKGK-----------GANKDGVDKDAVSQRL-EEIYKRLELIDAYTAEARAASILAGLSFTP 335 (718)
T ss_pred HHHHHHHHHhhhcccc--cccc-----------cccccccchHHHHHHH-HHHHHHHHhcCcchHHHHHHHHHHHCCCCh
Confidence 7788886543221000 0000 0000000000000000 00000 0000011222333333344432
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeE
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRV 417 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i 417 (602)
........++| ||||||++|||||+.+|++|||||||++||+.+..++.+.|+++ +.|+|+|||+++++.. ||+|
T Consensus 336 ~~~~~~~~~LS--gG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d~i 411 (718)
T PLN03073 336 EMQVKATKTFS--GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVTDI 411 (718)
T ss_pred HHHhCchhhCC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEE
Confidence 12233345677 69999999999999999999999999999999999999999886 6799999999999988 9999
Q ss_pred EEEeCceEEe-ecChhHHhhcchhH-------HHHHHHhh-hh-hHHH----------------HHHHhhh--------h
Q psy3001 418 LVLDKGLVVE-FDSPSVLMKNKASI-------FYSMAKDA-GL-AWLA----------------VRLETVG--------N 463 (602)
Q Consensus 418 ~~l~~G~i~~-~g~~~~l~~~~~~~-------~~~~~~~~-~~-~~~~----------------~~~~~~~--------~ 463 (602)
++|++|++.. .|+++.+....... |....+.. .. .+.. ...+... .
T Consensus 412 ~~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~e~~~k~~~~l~~~i~~~~~~a~~~~~~~s~~k~l~~~~~~~~~~~~~ 491 (718)
T PLN03073 412 LHLHGQKLVTYKGDYDTFERTREEQLKNQQKAFESNERSRSHMQAFIDKFRYNAKRASLVQSRIKALDRLGHVDAVVNDP 491 (718)
T ss_pred EEEECCEEEEeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHhhcchHHHHHhhhhccccCC
Confidence 9999999974 45555443221110 00000000 00 0000 0000000 0
Q ss_pred hH--HHHH----HHHHHHh---------cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 464 LI--TFSA----ALLAVLS---------KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 464 ~~--~~~~----~~~~~~~---------~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.. .+.. .....+. .....+.++||+|.+|+++||+|+||||||||+++|+|+++|++|+|.+++
T Consensus 492 ~~~~~~~~~~~~~~~~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~- 570 (718)
T PLN03073 492 DYKFEFPTPDDRPGPPIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA- 570 (718)
T ss_pred CceeecCCCccCCCCceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-
Confidence 00 0000 0000000 011234578999999999999999999999999999999999999999876
Q ss_pred ecCCCChhhhhccceEecCCccccccchhcccC-----CCCCCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 529 DIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD-----PVGESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 529 ~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~-----~~~~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
+.+|+|+||++.. .-++..|.. ......++++.++|+.+++.+ ...+.|.
T Consensus 571 ----------~~~igyv~Q~~~~-~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~ 626 (718)
T PLN03073 571 ----------KVRMAVFSQHHVD-GLDLSSNPLLYMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMY 626 (718)
T ss_pred ----------ceeEEEEeccccc-cCCcchhHHHHHHHhcCCCCHHHHHHHHHHCCCChHHhcCCcc
Confidence 3479999999732 113333311 112345678999999999974 4444433
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=322.22 Aligned_cols=215 Identities=28% Similarity=0.451 Sum_probs=174.3
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+|+++.+| |+++++|||||||||++|+|.++++|++|+|+++|.++++++..++|++||||-|....
T Consensus 13 ~~~av~~v~l~I~~g-ef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigL----- 86 (309)
T COG1125 13 NKKAVDDVNLTIEEG-EFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGL----- 86 (309)
T ss_pred CceeeeeeeEEecCC-eEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhccc-----
Confidence 456899999999998 99999999999999999999999999999999999999999999999999999996322
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCC--cccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lsgs~G 353 (602)
| .+.++.+++.. +....+.+ .....+..+.+..+++.| +..++++.||| |
T Consensus 87 ------F------------------Ph~Tv~eNIa~VP~L~~w~k-~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSG--G 139 (309)
T COG1125 87 ------F------------------PHLTVAENIATVPKLLGWDK-ERIKKRADELLDLVGLDPSEYADRYPHELSG--G 139 (309)
T ss_pred ------C------------------CCccHHHHHHhhhhhcCCCH-HHHHHHHHHHHHHhCCCHHHHhhcCchhcCc--c
Confidence 1 11122221110 01111111 112233344444566654 67889999995 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|+|||.+||||+.+|+++++|||+++|||-++..+++.+.++.+ ++|+|+||||+++... +|||.+|++|+++.+++
T Consensus 140 QQQRVGv~RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~ 219 (309)
T COG1125 140 QQQRVGVARALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDT 219 (309)
T ss_pred hhhHHHHHHHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999999999998888654 6999999999999988 99999999999999999
Q ss_pred hhHHhhcchhHHHH
Q psy3001 431 PSVLMKNKASIFYS 444 (602)
Q Consensus 431 ~~~l~~~~~~~~~~ 444 (602)
|++++.++...|..
T Consensus 220 P~~il~~Pan~FV~ 233 (309)
T COG1125 220 PDEILANPANDFVE 233 (309)
T ss_pred HHHHHhCccHHHHH
Confidence 99999887665543
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=339.15 Aligned_cols=255 Identities=23% Similarity=0.333 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc-cC---------CCCCCCCCCCCcEEEeeeEEEEecCCceEEE
Q psy3001 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWV-ND---------KKPKDEWPEKGEVEFKDYKVRYREGLELVGI 217 (602)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~-~~---------~~~~~~~~~~~~i~~~~vs~~~~~~~e~~~l 217 (602)
..|+...+..|..+..+..+.+|+.+++.+.+..... .- +......|...+..++++||+..+| +.+||
T Consensus 289 LaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G-~~lgI 367 (580)
T COG4618 289 LAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAG-EALGI 367 (580)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCC-ceEEE
Confidence 3466777788889999999999999998754432211 00 0001112444578999999999998 99999
Q ss_pred EeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccc
Q psy3001 218 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297 (602)
Q Consensus 218 vG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (602)
|||||||||||.|+|.|..+|.+|.|.+||-+++.++.+.+-++|||+||+ ..+| .
T Consensus 368 IGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQd-----------VeLF-------------~ 423 (580)
T COG4618 368 IGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQD-----------VELF-------------D 423 (580)
T ss_pred ECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccc-----------ceec-------------C
Confidence 999999999999999999999999999999999999999999999999998 3444 3
Q ss_pred cceeec-----cccc-c-cccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCe
Q psy3001 298 VSLIFT-----EDVK-P-LIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370 (602)
Q Consensus 298 ~~~~~~-----~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~i 370 (602)
+++..| ++.. + .+.....+..++.+...+.++ +..+++.|..|| |||||||+|||||+.+|.+
T Consensus 424 GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GY--------dT~iG~~G~~LS--gGQRQRIaLARAlYG~P~l 493 (580)
T COG4618 424 GTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGY--------DTRIGEGGATLS--GGQRQRIALARALYGDPFL 493 (580)
T ss_pred CcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCc--------cCccCCCCCCCC--chHHHHHHHHHHHcCCCcE
Confidence 333322 1110 0 000011111222222222222 334677788888 5999999999999999999
Q ss_pred EEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 371 LILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 371 liLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
++||||-|+||.+.|.-+.+.|...+ +|+|+|+||||++.+..+|+|++|++|++..+|+.+|++++
T Consensus 494 vVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 494 VVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred EEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 99999999999999999999998864 57999999999999999999999999999999999888764
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-41 Score=322.05 Aligned_cols=213 Identities=26% Similarity=0.395 Sum_probs=165.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++++| ++++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++..++.+.++||||.+..-+-+.
T Consensus 14 ~~~il~~ls~~i~~G-~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~t 92 (258)
T COG1120 14 GKPILDDLSFSIPKG-EITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLT 92 (258)
T ss_pred CeeEEecceEEecCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcE
Confidence 567899999999998 9999999999999999999999999999999999999999999999999999999753321100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
..+-+. +...+ -... ....-.+... ...+.++..+...+..+.-..|| |||||
T Consensus 93 V~d~V~------------~GR~p------~~~~----~~~~~~~D~~---~v~~aL~~~~~~~la~r~~~~LS--GGerQ 145 (258)
T COG1120 93 VYELVL------------LGRYP------HLGL----FGRPSKEDEE---IVEEALELLGLEHLADRPVDELS--GGERQ 145 (258)
T ss_pred EeehHh------------hcCCc------cccc----ccCCCHhHHH---HHHHHHHHhCcHHHhcCcccccC--hhHHH
Confidence 000000 00000 0000 0000011111 22233334455555556666777 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|+.|||||+++|++|+|||||++||.....++++.++++. +++|+|++.||++.... ||++++|++|+++..|++++
T Consensus 146 rv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~e 225 (258)
T COG1120 146 RVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEE 225 (258)
T ss_pred HHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcch
Confidence 9999999999999999999999999999999999999975 36999999999999887 99999999999999999998
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 226 vlT~ 229 (258)
T COG1120 226 VLTE 229 (258)
T ss_pred hcCH
Confidence 8764
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=310.37 Aligned_cols=213 Identities=27% Similarity=0.422 Sum_probs=167.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++||||++.+| |++||+|+||||||||.++|+|+.+|++|+|.++|.+.... .....++.+.+|+|+|..-+.
T Consensus 21 ~~l~~VS~~i~~G-e~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLn--- 96 (252)
T COG1124 21 HALNNVSLEIERG-ETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLN--- 96 (252)
T ss_pred hhhcceeEEecCC-CEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhccceeEEecCCccccC---
Confidence 4799999999998 99999999999999999999999999999999999776554 344678899999999754332
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~ 355 (602)
|. .++...+..+.. ....+. ..+..+.++.+++.+ +...++..+| |||+
T Consensus 97 --P~----------------------~tv~~~l~Epl~~~~~~~~---~~~i~~~L~~VgL~~~~l~R~P~eLS--GGQ~ 147 (252)
T COG1124 97 --PR----------------------RTVGRILSEPLRPHGLSKS---QQRIAELLDQVGLPPSFLDRRPHELS--GGQR 147 (252)
T ss_pred --cc----------------------hhHHHHHhhhhccCCccHH---HHHHHHHHHHcCCCHHHHhcCchhcC--hhHH
Confidence 11 111111111111 011111 122444455666543 6778889999 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||||||..+|++||||||||+||......+++.+.+.++ +.|.|+||||+..+.. ||||+||++|+++|.++..
T Consensus 148 QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~ 227 (252)
T COG1124 148 QRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTE 227 (252)
T ss_pred HHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechh
Confidence 999999999999999999999999999999999999988765 4699999999999999 9999999999999999999
Q ss_pred HHhhcchhHHHH
Q psy3001 433 VLMKNKASIFYS 444 (602)
Q Consensus 433 ~l~~~~~~~~~~ 444 (602)
++.......|..
T Consensus 228 ~l~~~~~h~ytr 239 (252)
T COG1124 228 ELLSHPSHPYTR 239 (252)
T ss_pred hhhcCCccHHHH
Confidence 987764444443
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=301.58 Aligned_cols=214 Identities=27% Similarity=0.426 Sum_probs=170.4
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~ 272 (602)
.++..++|+++++++| |+++|+|+||||||||+|+|.|+.+|++|+|.++|.++..++.. ++|+++|+++|.-
T Consensus 19 G~~~Ild~v~l~V~~G-ei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~g--- 94 (263)
T COG1127 19 GDRVILDGVDLDVPRG-EILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQG--- 94 (263)
T ss_pred CCEEEecCceeeecCC-cEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeecc---
Confidence 3578899999999998 99999999999999999999999999999999999999998765 5688999999962
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccccc--chhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC--SNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVT 349 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~ls 349 (602)
.+| ..-++.+++..+.. ..+.+.. ...-....++.+++.+. ...++..||
T Consensus 95 --------ALF------------------ssltV~eNVafplre~~~lp~~~-i~~lv~~KL~~VGL~~~~~~~~PsELS 147 (263)
T COG1127 95 --------ALF------------------SSLTVFENVAFPLREHTKLPESL-IRELVLMKLELVGLRGAAADLYPSELS 147 (263)
T ss_pred --------ccc------------------cccchhHhhheehHhhccCCHHH-HHHHHHHHHHhcCCChhhhhhCchhhc
Confidence 222 11111222111111 1111111 11122334556777665 677888999
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| |++.|+|||||++.||+++++||||++|||.+...+.+.++++.+ +.|+++||||++.+.. |||++++.+|+|+
T Consensus 148 G--GM~KRvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~ 225 (263)
T COG1127 148 G--GMRKRVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVI 225 (263)
T ss_pred c--hHHHHHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEE
Confidence 4 999999999999999999999999999999999999999988754 6899999999999998 9999999999999
Q ss_pred eecChhHHhhcchhHH
Q psy3001 427 EFDSPSVLMKNKASIF 442 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~ 442 (602)
..|+++++.+..+++.
T Consensus 226 ~~Gt~~el~~sd~P~v 241 (263)
T COG1127 226 AEGTPEELLASDDPWV 241 (263)
T ss_pred EeCCHHHHHhCCCHHH
Confidence 9999999988655443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=305.41 Aligned_cols=196 Identities=25% Similarity=0.332 Sum_probs=152.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~~v~Q~~~~~~ 273 (602)
...++++||++.+| |+++|+||||||||||+++|.|+..|++|.|.++|.++..++... .+++||+|+|+.
T Consensus 18 ~~~L~~v~l~i~~G-e~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~---- 92 (226)
T COG1136 18 VEALKDVNLEIEAG-EFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNF---- 92 (226)
T ss_pred eEecccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccC----
Confidence 45799999999998 999999999999999999999999999999999999999987543 457899999962
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCccc-ccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYS-HFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~lsgs 351 (602)
.+..+-++.+++..+. ....... ....+....++.+++.+... +.+..||
T Consensus 93 -------------------------nLl~~ltv~ENv~lpl~~~~~~~~-~~~~~~~~l~~~lgl~~~~~~~~p~eLS-- 144 (226)
T COG1136 93 -------------------------NLLPDLTVLENVELPLLIAGKSAG-RRKRAAEELLEVLGLEDRLLKKKPSELS-- 144 (226)
T ss_pred -------------------------CCCCCCCHHHHHHhHHHHcCCChh-HHHHHHHHHHHhcCChhhhccCCchhcC--
Confidence 1122222222221110 0000000 11222223333445553334 7788899
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
|||||||||||||+.+|++++.||||.+||.++.+.+++.+++.. .|+|+|+||||......|||++.+.+|++.
T Consensus 145 GGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 145 GGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 599999999999999999999999999999999999999999874 378999999999999999999999999953
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-39 Score=323.66 Aligned_cols=210 Identities=26% Similarity=0.361 Sum_probs=168.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++++|+++.+| |+++|+||||||||||+++|+|+.+|++|+|.++|.+++++++.. +.|++|+|+..
T Consensus 18 ~l~~i~l~i~~G-ef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yA--------- 85 (338)
T COG3839 18 VLKDVNLDIEDG-EFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYA--------- 85 (338)
T ss_pred eeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCcc---------
Confidence 899999999998 999999999999999999999999999999999999999998875 79999999621
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+ ...-++++++.++....-........+..+..+.+...++....+..|| ||||||||
T Consensus 86 --L------------------yPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LS--GGQrQRVA 143 (338)
T COG3839 86 --L------------------YPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLS--GGQRQRVA 143 (338)
T ss_pred --c------------------cCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCC--hhhHHHHH
Confidence 1 1222233332222111100001112223333446667777888899999 59999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|||||+++|++++||||.|+||+..+..+...++++.+ +.|+|+||||..++.. +|||.+|++|+|.+.|++.+++.
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999888888654 5899999999999988 99999999999999999999998
Q ss_pred cchhHHH
Q psy3001 437 NKASIFY 443 (602)
Q Consensus 437 ~~~~~~~ 443 (602)
++...+.
T Consensus 224 ~P~n~fV 230 (338)
T COG3839 224 RPANLFV 230 (338)
T ss_pred Cccchhh
Confidence 7665443
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-39 Score=302.66 Aligned_cols=191 Identities=26% Similarity=0.372 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+|+++.+| |+++|+||||||||||+|+|+|+.+|++|+|.++|.++..- ...++||+|+...+
T Consensus 16 ~~vl~~i~L~v~~G-EfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~Ll----- 84 (248)
T COG1116 16 VEVLEDINLSVEKG-EFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALL----- 84 (248)
T ss_pred eEEeccceeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCccc-----
Confidence 56899999999998 99999999999999999999999999999999999987443 35789999974321
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
||.. +.+++.......-....++..+..+.++.+++......++..+| ||||||
T Consensus 85 --PW~T----------------------v~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLS--GGMrQR 138 (248)
T COG1116 85 --PWLT----------------------VLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLS--GGMRQR 138 (248)
T ss_pred --chhh----------------------HHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccC--hHHHHH
Confidence 3322 11121111110000111122345566678888888899999999 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLV 425 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i 425 (602)
|||||||+.+|++|+||||+++||+.|+..+++.+.++. .++||++|||+.++... +|||++|.+ |+|
T Consensus 139 VaiARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 139 VAIARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 999999999999999999999999999999999887754 35999999999999887 999999998 445
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=307.52 Aligned_cols=208 Identities=25% Similarity=0.381 Sum_probs=170.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC-CCChHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-TLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~-~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++++||.+.+| ++++|+|+||||||||+++++|+++|++|+|.++|.++. ..+...+|+.+|+|+|+|..+++..
T Consensus 17 ~~~l~~v~~~i~~G-e~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~ 95 (235)
T COG1122 17 KAALKDVSLEIEKG-ERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGP 95 (235)
T ss_pred ceeeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccC
Confidence 56899999999988 999999999999999999999999999999999999988 4788899999999999987765321
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
. +.+-+.+ ......... ....+..+.++.++......+....||| |||
T Consensus 96 t----------------------------V~~evafg~~n~g~~~~-e~~~rv~~~l~~vgl~~~~~r~p~~LSG--Gqk 144 (235)
T COG1122 96 T----------------------------VEDEVAFGLENLGLPRE-EIEERVAEALELVGLEELLDRPPFNLSG--GQK 144 (235)
T ss_pred c----------------------------HHHHHhhchhhcCCCHH-HHHHHHHHHHHHcCchhhccCCccccCC--cce
Confidence 1 1100000 000011111 1233444555567777677788888994 999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||+|||.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++|||++.+.. |||+++|++|+++..|++.
T Consensus 145 qRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~ 224 (235)
T COG1122 145 QRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPA 224 (235)
T ss_pred eeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHH
Confidence 999999999999999999999999999999999999999754 4899999999999998 9999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++++
T Consensus 225 ~i~~~ 229 (235)
T COG1122 225 EIFND 229 (235)
T ss_pred HHhhh
Confidence 88765
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=292.60 Aligned_cols=211 Identities=23% Similarity=0.350 Sum_probs=156.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC-----ceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD-----GTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-----G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
-.++|||+.++++ +++|++||||||||||++++.++.+... |+|.++|+++.+ +++.++|+++|+|+|.|.
T Consensus 21 ~aL~~i~l~i~~~-~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPn- 98 (253)
T COG1117 21 HALKDINLDIPKN-KVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPN- 98 (253)
T ss_pred hhhccCceeccCC-ceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCC-
Confidence 3566666666666 8999999999999999999999998764 999999999976 468899999999999753
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
| | ..++..|-.. ..-.... ...+++..+...+....++.+. ..+...+..||
T Consensus 99 --------P--F-------------p~SIydNVay-G~r~~g~~~~~ldeiVe~sLk~AaLWdEVK--DrL~~sa~~LS- 151 (253)
T COG1117 99 --------P--F-------------PMSIYDNVAY-GLRLHGIKDKELDEIVESSLKKAALWDEVK--DRLHKSALGLS- 151 (253)
T ss_pred --------C--C-------------CchHHHHHHH-hHHhhccchHHHHHHHHHHHHHhHhHHHhH--HHhhCCccCCC-
Confidence 2 2 1111111000 0000000 0111122221111111121110 11333444566
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||+||+||||||+-+|+||+||||||+|||.+...|.+.+.+++++-|||+|||.+....+ +|+..++..|+++|+|
T Consensus 152 -GGQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g 230 (253)
T COG1117 152 -GGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230 (253)
T ss_pred -hhHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEc
Confidence 69999999999999999999999999999999999999999999988999999999999988 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
+.++++.++.
T Consensus 231 ~T~~iF~~P~ 240 (253)
T COG1117 231 PTDKIFTNPK 240 (253)
T ss_pred CHHhhhcCcc
Confidence 9999987754
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=325.01 Aligned_cols=209 Identities=25% Similarity=0.381 Sum_probs=164.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++..+ +|+.|+|++|++.
T Consensus 18 ~~~L~~vsl~i~~G-ei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~---- 92 (343)
T TIGR02314 18 IQALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFN---- 92 (343)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCcc----
Confidence 35899999999998 999999999999999999999999999999999999998887654 4789999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..++.+++..+. ...... .....+..+.++.++..+........+| ||
T Consensus 93 -------l~~------------------~~tv~eni~~~~~~~~~~~-~~~~~~v~e~l~~vgL~~~~~~~~~~LS--gG 144 (343)
T TIGR02314 93 -------LLS------------------SRTVFGNVALPLELDNTPK-DEIKRKVTELLALVGLGDKHDSYPSNLS--GG 144 (343)
T ss_pred -------ccc------------------cCcHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--HH
Confidence 110 011111111000 000000 0111223344445566555666777888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 145 qkQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 145 QKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999998753 7899999999999988 99999999999999999
Q ss_pred hhHHhhcch
Q psy3001 431 PSVLMKNKA 439 (602)
Q Consensus 431 ~~~l~~~~~ 439 (602)
+++++..+.
T Consensus 225 ~~~v~~~p~ 233 (343)
T TIGR02314 225 VSEIFSHPK 233 (343)
T ss_pred HHHHHcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=293.76 Aligned_cols=208 Identities=28% Similarity=0.415 Sum_probs=165.7
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~ 272 (602)
.+...++|||+.+++| |.++|+|+||||||||+++|.|+.+|++|+|.++|.++..++ ...+|++||+++|.+...
T Consensus 15 ~~~~aL~~Vnl~I~~G-E~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv 93 (258)
T COG3638 15 GGHQALKDVNLEINQG-EMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRDIGMIFQQFNLV 93 (258)
T ss_pred CCceeeeeEeEEeCCC-cEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHhceeEeccCCcc
Confidence 4677899999999998 999999999999999999999999999999999999998887 446778999999973321
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHH-----HHHHHHHHHHHhhcccCCccccc
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRF-----YVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
- ..++..++... ....++.. ......+++.++.++..+.....
T Consensus 94 ~-----------------------------r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qr 144 (258)
T COG3638 94 P-----------------------------RLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQR 144 (258)
T ss_pred c-----------------------------ccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHH
Confidence 0 00110110000 00011110 11223445566666666666667
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
..+|| |||+|||+|||||+++|++++-|||+++|||.+.+.+++.|++.. .|.|+|+.-|+++.+.+ ||||+-|+
T Consensus 145 a~~LS--GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~ 222 (258)
T COG3638 145 ASTLS--GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLK 222 (258)
T ss_pred hccCC--cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEec
Confidence 77888 599999999999999999999999999999999999999999864 47999999999999998 99999999
Q ss_pred CceEEeecChhHHh
Q psy3001 422 KGLVVEFDSPSVLM 435 (602)
Q Consensus 422 ~G~i~~~g~~~~l~ 435 (602)
+|+|+..|++.++-
T Consensus 223 ~G~ivfDg~~~el~ 236 (258)
T COG3638 223 AGRIVFDGPASELT 236 (258)
T ss_pred CCcEEEeCChhhhh
Confidence 99999999998853
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=340.33 Aligned_cols=231 Identities=19% Similarity=0.199 Sum_probs=152.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc-------ccC-CC-------------CCCCCCCCCcEEEeee
Q psy3001 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW-------VND-KK-------------PKDEWPEKGEVEFKDY 204 (602)
Q Consensus 146 ~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~-------~~~-~~-------------~~~~~~~~~~i~~~~v 204 (602)
.+..|+..+......+++...+.+|+.++++.+++... ... .. ........+.++++|+
T Consensus 378 ~l~~~~~~l~~~~~~i~~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv 457 (659)
T TIGR00954 378 KAADALGRLMLAGRDMTRLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENI 457 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEee
Confidence 34566777888899999999999999999864322110 000 00 0000001234556666
Q ss_pred EEEE--------------ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccch
Q psy3001 205 KVRY--------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 205 s~~~--------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++.| ++| ++++|+|+||||||||+++|+|+++|++|+|.+++ ++.++++||++
T Consensus 458 ~~~~~~~~~il~~isl~i~~G-e~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~- 524 (659)
T TIGR00954 458 PLVTPNGDVLIESLSFEVPSG-NHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRP- 524 (659)
T ss_pred EEECCCCCeeeecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCC-
Confidence 6655 334 88999999999999999999999999999998864 56799999984
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccc-ccccchhHHHHHHHHHHHHHHhhcccCCc---------
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSNLQRFYVATSRQLKRLESVSRSPI--------- 340 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--------- 340 (602)
.++ .+++..|-....... ........+ ...+.++ ..+..+.
T Consensus 525 ----------~l~-------------~~tv~eni~~~~~~~~~~~~~~~~~---~i~~~l~---~~~l~~~~~~~~g~~~ 575 (659)
T TIGR00954 525 ----------YMT-------------LGTLRDQIIYPDSSEDMKRRGLSDK---DLEQILD---NVQLTHILEREGGWSA 575 (659)
T ss_pred ----------CCC-------------CcCHHHHHhcCCChhhhhccCCCHH---HHHHHHH---HcCCHHHHhhcCCccc
Confidence 222 111111100000000 000000000 0011111 1111110
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
....+..+| ||||||++|||||+++|+++||||||++||+++++.+.+.+++. ++|+|+||||++.+..||++++|
T Consensus 576 ~~~~~~~LS--gGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l 651 (659)
T TIGR00954 576 VQDWMDVLS--GGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYM 651 (659)
T ss_pred ccccccCCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEE
Confidence 112345677 69999999999999999999999999999999999999998764 78999999999998889999999
Q ss_pred eC
Q psy3001 421 DK 422 (602)
Q Consensus 421 ~~ 422 (602)
+.
T Consensus 652 ~~ 653 (659)
T TIGR00954 652 DG 653 (659)
T ss_pred eC
Confidence 73
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=319.05 Aligned_cols=213 Identities=22% Similarity=0.340 Sum_probs=171.9
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+|+++.+| |+++|+|||||||||++++|+|+..|++|+|.++|+++..+++. ++.|++|+|+
T Consensus 17 ~~~av~~isl~i~~G-ef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~-------- 85 (352)
T COG3842 17 DFTAVDDISLDIKKG-EFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQS-------- 85 (352)
T ss_pred CeeEEecceeeecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecC--------
Confidence 467899999999998 99999999999999999999999999999999999999998875 5789999997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchh-HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..+| ..-++.+++.++..... ........+..+.++.+.+.+...+.++.+| |||+
T Consensus 86 ---YALF------------------PHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLS--GGQq 142 (352)
T COG3842 86 ---YALF------------------PHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLS--GGQQ 142 (352)
T ss_pred ---cccC------------------CCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhC--hHHH
Confidence 2222 12223333222211000 0001122344455557777777888899999 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||||||+.+|++|+||||.|+||.+-+..+...++++. .|.|.|+||||-++... +|||.||++|+|...|+++
T Consensus 143 QRVALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ 222 (352)
T COG3842 143 QRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPE 222 (352)
T ss_pred HHHHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHH
Confidence 99999999999999999999999999999999988887764 37999999999999888 9999999999999999999
Q ss_pred HHhhcchhHHH
Q psy3001 433 VLMKNKASIFY 443 (602)
Q Consensus 433 ~l~~~~~~~~~ 443 (602)
+++..+...|.
T Consensus 223 eiY~~P~~~fV 233 (352)
T COG3842 223 EIYERPATRFV 233 (352)
T ss_pred HHhhCcchHHH
Confidence 99987655443
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=322.80 Aligned_cols=212 Identities=26% Similarity=0.384 Sum_probs=167.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++.
T Consensus 6 ~~~l~~vs~~i~~G-ei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~--- 81 (363)
T TIGR01186 6 KKGVNDADLAIAKG-EIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFA--- 81 (363)
T ss_pred ceeEEeeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCc---
Confidence 45899999999998 9999999999999999999999999999999999999999888877 789999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+|. .. ++.+++... ...... ......+..+.++.+++.......+..+| |
T Consensus 82 --------l~~------------~~------TV~eNi~~~~~~~~~~-~~~~~~~~~~~l~~vgL~~~~~~~p~~LS--G 132 (363)
T TIGR01186 82 --------LFP------------HM------TILQNTSLGPELLGWP-EQERKEKALELLKLVGLEEYEHRYPDELS--G 132 (363)
T ss_pred --------CCC------------CC------CHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCchhhhCChhhCC--H
Confidence 220 01 111111000 000000 00112233344445666666777788888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||+|||||+.+|++|+|||||++||+.++..+.+.+.++. .++|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 133 Gq~QRV~lARAL~~~p~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 133 GMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999999999999999999999998864 37999999999999877 9999999999999999
Q ss_pred ChhHHhhcchhHH
Q psy3001 430 SPSVLMKNKASIF 442 (602)
Q Consensus 430 ~~~~l~~~~~~~~ 442 (602)
++++++..+...|
T Consensus 213 ~~~ei~~~p~~~~ 225 (363)
T TIGR01186 213 TPDEILRNPANEY 225 (363)
T ss_pred CHHHHHhCcccHH
Confidence 9999887644333
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-38 Score=278.65 Aligned_cols=193 Identities=26% Similarity=0.319 Sum_probs=148.8
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+|++||+||||||||||+++|+|+..|.+|+|.++|+|.....+. .+-+++++|+ ..+|..
T Consensus 25 ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQE-----------nNLFaH------ 85 (231)
T COG3840 25 GEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQE-----------NNLFAH------ 85 (231)
T ss_pred CcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhc-----------cccchh------
Confidence 399999999999999999999999999999999999999887764 4578888987 222211
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
-+++.++.......+.--.....+.......+++.....+.+.++| ||||||+||||+|+++.+||
T Consensus 86 ------------LtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LS--GGqRQRvALARclvR~~Pil 151 (231)
T COG3840 86 ------------LTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELS--GGQRQRVALARCLVREQPIL 151 (231)
T ss_pred ------------hhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccC--chHHHHHHHHHHHhccCCeE
Confidence 0111111111111111111111122222335666666778888899 59999999999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
+||||+|+|||.-+.++...+.++. ++.|+++|||.++.+.. +|+++++++|+|...|+..+++..
T Consensus 152 LLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 152 LLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred EecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 9999999999999999999888864 36899999999999988 999999999999999998888765
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-38 Score=300.29 Aligned_cols=215 Identities=29% Similarity=0.430 Sum_probs=175.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHh----hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR----SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~~~~~ 273 (602)
.+-++|+||.+++| |+..|.|-||||||||+++++|+++|+.|+|.++|.|+..++..++| +.+++|+|....+
T Consensus 41 vvGv~~~sl~v~~G-eIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLl- 118 (386)
T COG4175 41 VVGVNDASLDVEEG-EIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELRRKKISMVFQSFALL- 118 (386)
T ss_pred EEeeccceeeecCC-eEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccc-
Confidence 46799999999998 99999999999999999999999999999999999999999988765 6899999962211
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
|+ .+...| ..+.....-.....+..+..+.++.+++..+...++..||| |
T Consensus 119 ------Ph----------------rtVl~N------v~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSG--G 168 (386)
T COG4175 119 ------PH----------------RTVLEN------VAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSG--G 168 (386)
T ss_pred ------cc----------------hhHhhh------hhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccc--h
Confidence 11 111111 00000000001123445566667788888888999999995 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
+||||.|||||..+|+||++|||+|+|||--+.++++.|.++.. ++|||+||||+++... .|||.+|++|+|+..|+
T Consensus 169 MqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaimkdG~ivQ~Gt 248 (386)
T COG4175 169 MQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIMKDGEIVQVGT 248 (386)
T ss_pred HHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEecCCeEEEeCC
Confidence 99999999999999999999999999999999999988877643 6999999999999988 99999999999999999
Q ss_pred hhHHhhcchhHHHH
Q psy3001 431 PSVLMKNKASIFYS 444 (602)
Q Consensus 431 ~~~l~~~~~~~~~~ 444 (602)
|+|++.++..-|-.
T Consensus 249 p~eIl~~PAndYV~ 262 (386)
T COG4175 249 PEEILLNPANDYVR 262 (386)
T ss_pred HHHHHcCccHHHHH
Confidence 99999887665543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-38 Score=300.05 Aligned_cols=205 Identities=25% Similarity=0.394 Sum_probs=154.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|.+|+|.+.|.+...... +..||||||....
T Consensus 18 ~vl~~i~l~v~~G-~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYVPQ~~~~------- 86 (254)
T COG1121 18 PVLEDISLSVEKG-EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYVPQKSSV------- 86 (254)
T ss_pred eeeeccEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEcCccccc-------
Confidence 4899999999988 9999999999999999999999999999999999987765433 5689999995211
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccch---hHHH-HHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN---LQRF-YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
.+ .+.-++.+.+....... +... .....+..+.++.++...+....-..|| |||
T Consensus 87 -d~-------------------~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LS--GGQ 144 (254)
T COG1121 87 -DR-------------------SFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELS--GGQ 144 (254)
T ss_pred -CC-------------------CCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccC--cHH
Confidence 01 11111112111110000 0000 0011223344445555555566666777 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
+|||.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+||++||||+..+.. +|+|+.|+ +++...|+++
T Consensus 145 ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G~~~ 223 (254)
T COG1121 145 KQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASGPPE 223 (254)
T ss_pred HHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEeccChh
Confidence 9999999999999999999999999999999999999998764 8999999999999988 99999996 5667889998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+.++.
T Consensus 224 ~~~~~ 228 (254)
T COG1121 224 EVLTE 228 (254)
T ss_pred hccCH
Confidence 88764
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-38 Score=299.85 Aligned_cols=209 Identities=25% Similarity=0.348 Sum_probs=163.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe---ecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~---~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+++.+..| |.+|+.||||||||||+++|+|+..|++|.|.++|. |.+.. ..-.++||+|+|+..
T Consensus 16 ~a~~di~l~i~~G-e~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~--~~~~R~VGfvFQ~YA----- 87 (345)
T COG1118 16 GALDDISLDIKSG-ELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNL--AVRDRKVGFVFQHYA----- 87 (345)
T ss_pred cccccceeeecCC-cEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhcc--chhhcceeEEEechh-----
Confidence 4677999999988 999999999999999999999999999999999999 55542 344578999999833
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchh--HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL--QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|.. .++.+++.+...... ........+..+.+..+.+..+...++..|| ||
T Consensus 88 ------LF~H------------------mtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLS--GG 141 (345)
T COG1118 88 ------LFPH------------------MTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLS--GG 141 (345)
T ss_pred ------hccc------------------chHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcC--hH
Confidence 2211 111122111110000 0001111223333445666777888899999 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||||||||+.+|++|+||||+++||+.-+..+...|++..+ +.|+++||||.+++.. ||||++|++|+|...|+
T Consensus 142 QrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~ 221 (345)
T COG1118 142 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221 (345)
T ss_pred HHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCC
Confidence 99999999999999999999999999999999999999988643 7899999999999988 99999999999999999
Q ss_pred hhHHhhcchhH
Q psy3001 431 PSVLMKNKASI 441 (602)
Q Consensus 431 ~~~l~~~~~~~ 441 (602)
+++++..+...
T Consensus 222 p~ev~~~P~s~ 232 (345)
T COG1118 222 PDEVYDHPASR 232 (345)
T ss_pred HHHHhcCCCcc
Confidence 99998876543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-37 Score=277.75 Aligned_cols=202 Identities=25% Similarity=0.334 Sum_probs=161.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~ 273 (602)
+...++||||++++| |++-|+||||||||||+|+|.+...|+.|+|.++|.|+..++-. .+|++||+|+|+...
T Consensus 14 g~~aL~~vs~~i~~G-ef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rL-- 90 (223)
T COG2884 14 GREALRDVSFHIPKG-EFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRL-- 90 (223)
T ss_pred CchhhhCceEeecCc-eEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeEeeeccc--
Confidence 356899999999998 99999999999999999999999999999999999999887644 689999999997221
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
....++.+++..+....-..-.....+..+.++.+++......++..||| |
T Consensus 91 ---------------------------L~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSG--G 141 (223)
T COG2884 91 ---------------------------LPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSG--G 141 (223)
T ss_pred ---------------------------cccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCc--h
Confidence 11112222221111100001112223444556677777778888999994 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++||||++.+|++||-||||-+|||+....+++.+.+.. .|.||+++||+.+.+.. --|++.+++|+++....
T Consensus 142 EQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 142 EQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 9999999999999999999999999999999999999998875 58999999999999998 67899999999986543
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-37 Score=302.70 Aligned_cols=221 Identities=27% Similarity=0.397 Sum_probs=175.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-C----CCceEEECCeecCCCChHHHh----hccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-P----ADGTIIIDGVDIRTLGLHTLR----SRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~----~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~ 268 (602)
...++||||+..+| |++||||+|||||||+.++|+|+++ | .+|+|.++|.++..++.++++ +.|++|+|+
T Consensus 18 v~av~~vs~~i~~G-E~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~ 96 (316)
T COG0444 18 VKAVDGVSFELKKG-EILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQD 96 (316)
T ss_pred EEEEeceeEEEcCC-cEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHHHHhhcCceEEEEEcC
Confidence 35899999999998 9999999999999999999999998 4 579999999999999987543 589999999
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFG 345 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~ 345 (602)
|...+. |++- ....+.+.+.. ........++..+..+.++.++..+ ....++
T Consensus 97 p~~sLn-----Pv~~------------------Ig~Qi~E~l~~--h~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YP 151 (316)
T COG0444 97 PMTSLN-----PVMT------------------IGDQIAEVLRL--HGKGLSKKEAKERAIELLELVGIPDPERRLKSYP 151 (316)
T ss_pred chhhcC-----Chhh------------------HHHHHHHHHHH--hhcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCC
Confidence 765442 2211 11111111000 0000011122344555566666543 678889
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
+++|| ||||||.||.||+.+|++||.||||++||...+..+.+.|+++.+ +.++|+||||+..+.. ||||+||..
T Consensus 152 helSG--GMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYa 229 (316)
T COG0444 152 HELSG--GMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYA 229 (316)
T ss_pred cccCC--cHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEEC
Confidence 99995 999999999999999999999999999999999999999998764 7999999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHH
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
|+|+|.|+.++++.++...|....
T Consensus 230 G~iVE~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 230 GRIVEEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred cEEEEeCCHHHHhcCCCChHHHHH
Confidence 999999999999999888877654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-37 Score=317.29 Aligned_cols=207 Identities=20% Similarity=0.300 Sum_probs=161.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 17 ~~~l~~vsl~i~~G-e~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~------- 86 (356)
T PRK11650 17 TQVIKGIDLDVADG-EFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYA------- 86 (356)
T ss_pred CEEEeeeeEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999877654 478999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. +.++.+++..... .... ......+..+.++.++..........+|| |||||
T Consensus 87 ----lfp------------------~~tv~eNi~~~~~~~~~~-~~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~Q 141 (356)
T PRK11650 87 ----LYP------------------HMSVRENMAYGLKIRGMP-KAEIEERVAEAARILELEPLLDRKPRELS--GGQRQ 141 (356)
T ss_pred ----ccC------------------CCCHHHHHHhHHhhcCCC-HHHHHHHHHHHHHHcCChhHhhCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111222333445555556666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.++++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 142 RvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~ 221 (356)
T PRK11650 142 RVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVE 221 (356)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999987 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 222 ~~~~p~ 227 (356)
T PRK11650 222 VYEKPA 227 (356)
T ss_pred HHhCCc
Confidence 877643
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=299.93 Aligned_cols=207 Identities=29% Similarity=0.402 Sum_probs=157.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~---- 87 (235)
T cd03261 13 RTVLKGVDLDVRRG-EILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGA---- 87 (235)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcc----
Confidence 35799999999998 9999999999999999999999999999999999999877654 567889999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. . .++.+++... . ...... .....+..+.++.++...........+| |
T Consensus 88 -------~~~------------~------~tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 139 (235)
T cd03261 88 -------LFD------------S------LTVFENVAFPLREHTRLSE-EEIREIVLEKLEAVGLRGAEDLYPAELS--G 139 (235)
T ss_pred -------cCC------------C------CcHHHHHHHHHhhccCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--H
Confidence 110 0 0111110000 0 000000 0001112223334444444444555677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.+++..+ ++|||++||+++.+.. ||++++|++|++++.|
T Consensus 140 G~~qrv~ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 140 GMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 999999999999999999999999999999999999999988643 7899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++...
T Consensus 220 ~~~~~~~~ 227 (235)
T cd03261 220 TPEELRAS 227 (235)
T ss_pred CHHHHcCC
Confidence 98887643
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-36 Score=313.94 Aligned_cols=208 Identities=24% Similarity=0.385 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...++ .++.++|++|++.
T Consensus 19 ~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~vfQ~~~------- 88 (351)
T PRK11432 19 NTVIDNLNLTIKQG-TMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICMVFQSYA------- 88 (351)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCcc-------
Confidence 34799999999988 9999999999999999999999999999999999999987664 3578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... ..... .....+..+.++.++...+.......+| |||||
T Consensus 89 ----lfp------------------~~tv~eNi~~~l~~~~~~~-~~~~~~v~~~l~~~gl~~~~~r~~~~LS--gGq~Q 143 (351)
T PRK11432 89 ----LFP------------------HMSLGENVGYGLKMLGVPK-EERKQRVKEALELVDLAGFEDRYVDQIS--GGQQQ 143 (351)
T ss_pred ----cCC------------------CCCHHHHHHHHHhHcCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 220 0111111111000 00000 0111222233334455555666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 144 RVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~ 223 (351)
T PRK11432 144 RVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQE 223 (351)
T ss_pred HHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988743 7899999999999977 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 224 ~~~~p~~ 230 (351)
T PRK11432 224 LYRQPAS 230 (351)
T ss_pred HHhCCCc
Confidence 8876443
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-36 Score=314.03 Aligned_cols=207 Identities=24% Similarity=0.357 Sum_probs=162.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|+++...++. ++.++|++|++.
T Consensus 17 ~~~l~~vs~~i~~G-e~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~------- 86 (353)
T TIGR03265 17 FTALKDISLSVKKG-EFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYA------- 86 (353)
T ss_pred eEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcc-------
Confidence 34799999999988 99999999999999999999999999999999999999877653 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++...... ... ......+..+.++.++..++.......+| |||||
T Consensus 87 ----lfp------------------~~tv~eNi~~~~~~~~~~-~~~~~~~~~~~l~~l~L~~~~~~~~~~LS--gGq~Q 141 (353)
T TIGR03265 87 ----LFP------------------NLTVADNIAYGLKNRGMG-RAEVAERVAELLDLVGLPGSERKYPGQLS--GGQQQ 141 (353)
T ss_pred ----cCC------------------CCcHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCCchhhCChhhCC--HHHHH
Confidence 220 01111111100000 000 00111233344445666666777788888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 142 RvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~ 221 (353)
T TIGR03265 142 RVALARALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQE 221 (353)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999887 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 222 ~~~~p~ 227 (353)
T TIGR03265 222 IYRHPA 227 (353)
T ss_pred HHhCCC
Confidence 987643
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=304.37 Aligned_cols=216 Identities=30% Similarity=0.503 Sum_probs=163.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ .+|+|.++|.++..++...+|+.++|+||++
T Consensus 17 ~~~l~~isl~I~~G-e~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~-------- 86 (275)
T cd03289 17 NAVLENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKV-------- 86 (275)
T ss_pred CcceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCc--------
Confidence 34799999999998 9999999999999999999999998 7999999999999999999999999999983
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HHHH-Hhh--cccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QLKR-LES--VSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-l~~--~~~~~~~~~~~~~lsgs~G 353 (602)
.+| ..++..|-.... .. ...+....... .++. +.. ......+.+.+..+| +|
T Consensus 87 ---~lf-------------~~tv~~nl~~~~-----~~-~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS--~G 142 (275)
T cd03289 87 ---FIF-------------SGTFRKNLDPYG-----KW-SDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLS--HG 142 (275)
T ss_pred ---ccc-------------hhhHHHHhhhcc-----CC-CHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCC--HH
Confidence 333 111111100000 00 00011110000 0000 000 011122344566677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++||||++++|++|||||||++||+.+...+.+.|++...++|+|+||||++++..||||++|++|+++++|++++
T Consensus 143 ~~qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~ 222 (275)
T cd03289 143 HKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQK 222 (275)
T ss_pred HHHHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999988899999999999999999999
Q ss_pred HhhcchhHHHHHHHh
Q psy3001 434 LMKNKASIFYSMAKD 448 (602)
Q Consensus 434 l~~~~~~~~~~~~~~ 448 (602)
+++. ...+..+...
T Consensus 223 l~~~-~~~~~~~~~~ 236 (275)
T cd03289 223 LLNE-KSHFKQAISP 236 (275)
T ss_pred HhhC-cHHHHHHHhh
Confidence 9885 3455555443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-36 Score=308.93 Aligned_cols=207 Identities=21% Similarity=0.341 Sum_probs=155.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----------------ChHHHhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----------------GLHTLRSRL 262 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----------------~~~~~~~~i 262 (602)
..++|+||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.+
T Consensus 40 ~~L~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 118 (320)
T PRK13631 40 VALNNISYTFEKN-KIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRV 118 (320)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccccccccccccchHHHHHhcE
Confidence 4678888888777 99999999999999999999999999999999999988653 345678999
Q ss_pred ceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-Cc
Q psy3001 263 TIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PI 340 (602)
Q Consensus 263 ~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~ 340 (602)
+|++|++..+ +| .. ++.+++... ....... .....+..+.++.++.. ..
T Consensus 119 g~v~Q~~~~~---------l~-------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~ 169 (320)
T PRK13631 119 SMVFQFPEYQ---------LF-------------KD------TIEKDIMFGPVALGVKK-SEAKKLAKFYLNKMGLDDSY 169 (320)
T ss_pred EEEEECchhc---------cc-------------cc------hHHHHHHhhHHhcCCCH-HHHHHHHHHHHHHcCCChhH
Confidence 9999985311 11 10 111111000 0000000 00111222233344443 34
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVL 418 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~ 418 (602)
....+.++| ||||||++|||||+.+|++|||||||++||+.++.++.+.|+++. +++|||+|||+++.+.. ||+|+
T Consensus 170 ~~~~~~~LS--gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 170 LERSPFGLS--GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hcCCcccCC--HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 555667788 599999999999999999999999999999999999999998764 47899999999998876 99999
Q ss_pred EEeCceEEeecChhHHhhc
Q psy3001 419 VLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 419 ~l~~G~i~~~g~~~~l~~~ 437 (602)
+|++|++++.|++++++..
T Consensus 248 vl~~G~i~~~g~~~~~~~~ 266 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFTD 266 (320)
T ss_pred EEECCEEEEeCCHHHHhcC
Confidence 9999999999999988754
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=310.13 Aligned_cols=217 Identities=21% Similarity=0.310 Sum_probs=163.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC----CCCceEEECCeecCCCChHHHhh----ccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE----PADGTIIIDGVDIRTLGLHTLRS----RLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~----~~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~~ 269 (602)
...++||||++.+| |++||+|+||||||||+++|+|+++ |++|+|.++|.++..++...+++ .++|++|++
T Consensus 20 ~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~ 98 (326)
T PRK11022 20 FRAVDRISYSVKQG-EVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDP 98 (326)
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35899999999999 9999999999999999999999997 48999999999998888766543 799999985
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGE 346 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~ 346 (602)
...+. |.+. ..+.+.+.+. ...... ......+..+.++.++..+ .......
T Consensus 99 ~~~l~-----p~~~------------------v~~~i~~~l~--~~~~~~-~~~~~~~~~~~L~~~gL~~~~~~l~~~p~ 152 (326)
T PRK11022 99 MTSLN-----PCYT------------------VGFQIMEAIK--VHQGGN-KKTRRQRAIDLLNQVGIPDPASRLDVYPH 152 (326)
T ss_pred hhhcC-----CcCC------------------HHHHHHHHHH--HhcCCC-HHHHHHHHHHHHHHCCCCChHHHHhCCch
Confidence 32110 1100 0000100000 000000 0011122333344444432 3455677
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
.+| ||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||||++|.+|
T Consensus 153 ~LS--gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G 230 (326)
T PRK11022 153 QLS--GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAG 230 (326)
T ss_pred hCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 788 5999999999999999999999999999999999999999988753 7899999999999977 9999999999
Q ss_pred eEEeecChhHHhhcchhHHH
Q psy3001 424 LVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~~~~ 443 (602)
++++.|+++++++++...|.
T Consensus 231 ~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 231 QVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred EEEEECCHHHHhhCCCChHH
Confidence 99999999999876555554
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-36 Score=309.89 Aligned_cols=218 Identities=23% Similarity=0.364 Sum_probs=163.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHh----hccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLR----SRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~~ 270 (602)
...++||||++.+| |+++|+|+||||||||+++|+|+++|+ +|+|.++|.++..++...++ +.|+||+|++.
T Consensus 29 ~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~ 107 (330)
T PRK09473 29 VTAVNDLNFSLRAG-ETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDPM 107 (330)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHHHHHhcCCEEEEEcCch
Confidence 35799999999998 999999999999999999999999996 99999999999988876653 47999999853
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCCc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGET 347 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~ 347 (602)
..+. |.+. ..+.+...+.........+. ..+..+.++.++..+ .....+..
T Consensus 108 ~~l~-----p~~~------------------v~~~i~~~~~~~~~~~~~~~---~~~~~~~L~~vgL~~~~~~~~~~p~~ 161 (330)
T PRK09473 108 TSLN-----PYMR------------------VGEQLMEVLMLHKGMSKAEA---FEESVRMLDAVKMPEARKRMKMYPHE 161 (330)
T ss_pred hhcC-----CCCC------------------HHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHcCCCChHHHhcCCccc
Confidence 2111 1100 00001000000000000111 112223333444332 23456777
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|+
T Consensus 162 LS--gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ 239 (330)
T PRK09473 162 FS--GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGR 239 (330)
T ss_pred CC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCE
Confidence 88 6999999999999999999999999999999999999999988754 7899999999999987 99999999999
Q ss_pred EEeecChhHHhhcchhHHHH
Q psy3001 425 VVEFDSPSVLMKNKASIFYS 444 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~~~~~ 444 (602)
|++.|+++++++.+...|..
T Consensus 240 ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 240 TMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred EEEECCHHHHHhCCCCHHHH
Confidence 99999999998876555544
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-36 Score=311.60 Aligned_cols=208 Identities=26% Similarity=0.400 Sum_probs=160.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++... +++.++|++|++.
T Consensus 18 ~~il~~vsl~i~~G-ei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~---- 92 (343)
T PRK11153 18 IHALNNVSLHIPAG-EIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKARRQIGMIFQHFN---- 92 (343)
T ss_pred eEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEeCCCc----
Confidence 45899999999998 999999999999999999999999999999999999998876554 4788999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| ||
T Consensus 93 -------l~~------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gG 144 (343)
T PRK11153 93 -------LLS------------SR------TVFDNVALPLELAGTPK-AEIKARVTELLELVGLSDKADRYPAQLS--GG 144 (343)
T ss_pred -------cCC------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--HH
Confidence 110 00 1111100000 000000 0011122233344455444555566777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+++|++|+|||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 145 q~qRv~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~ 224 (343)
T PRK11153 145 QKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224 (343)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999998743 7899999999999987 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
+++++..+
T Consensus 225 ~~~~~~~~ 232 (343)
T PRK11153 225 VSEVFSHP 232 (343)
T ss_pred HHHHHhCC
Confidence 98887653
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-36 Score=309.35 Aligned_cols=215 Identities=26% Similarity=0.374 Sum_probs=163.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+++.++||+|++...+.
T Consensus 34 ~~~l~~vsl~i~~G-e~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 112 (331)
T PRK15079 34 LKAVDGVTLRLYEG-ETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLN 112 (331)
T ss_pred eEEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCcCCHHHHHHHhCceEEEecCchhhcC
Confidence 45899999999998 99999999999999999999999999999999999999887654 356789999998532110
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
|. .++.+++... ....... .....+..+.++.++.. .........||
T Consensus 113 -----p~----------------------~tv~~~i~~~l~~~~~~~~~-~~~~~~~~~~l~~vgl~~~~~~~~p~~LS- 163 (331)
T PRK15079 113 -----PR----------------------MTIGEIIAEPLRTYHPKLSR-QEVKDRVKAMMLKVGLLPNLINRYPHEFS- 163 (331)
T ss_pred -----CC----------------------CCHHHHHHHHHHHhccCCCH-HHHHHHHHHHHHHcCCChHHhcCCcccCC-
Confidence 00 0011110000 0000000 01111222333344442 24566677888
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|++++
T Consensus 164 -gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 164 -GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 5999999999999999999999999999999999999999988753 7899999999999987 99999999999999
Q ss_pred ecChhHHhhcchhHHH
Q psy3001 428 FDSPSVLMKNKASIFY 443 (602)
Q Consensus 428 ~g~~~~l~~~~~~~~~ 443 (602)
.|+.++++.++...|.
T Consensus 243 ~g~~~~i~~~~~~py~ 258 (331)
T PRK15079 243 LGTYDEVYHNPLHPYT 258 (331)
T ss_pred EcCHHHHHcCCCCHHH
Confidence 9999998876544443
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-36 Score=308.58 Aligned_cols=217 Identities=21% Similarity=0.313 Sum_probs=164.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++||||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+|+.++||+|++...+.
T Consensus 28 ~~~l~~vsl~i~~G-e~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~ 106 (327)
T PRK11308 28 VKALDGVSFTLERG-KTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLN 106 (327)
T ss_pred eeEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcC
Confidence 35799999999998 99999999999999999999999999999999999999887654 467789999998532110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~G 353 (602)
|.+. ..+.+............. ....+..+.++.++..+ ........+| ||
T Consensus 107 -----p~~~------------------v~~~l~~~~~~~~~~~~~---~~~~~~~~~l~~~gL~~~~~~~~p~~LS--gG 158 (327)
T PRK11308 107 -----PRKK------------------VGQILEEPLLINTSLSAA---ERREKALAMMAKVGLRPEHYDRYPHMFS--GG 158 (327)
T ss_pred -----CccC------------------HHHHHHHHHHHccCCCHH---HHHHHHHHHHHHCCCChHHhcCCCccCC--HH
Confidence 1000 000000000000000000 11122333344444432 4466677888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|.+|++++.|+
T Consensus 159 q~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~ 238 (327)
T PRK11308 159 QRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT 238 (327)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988743 7899999999999987 99999999999999999
Q ss_pred hhHHhhcchhHHH
Q psy3001 431 PSVLMKNKASIFY 443 (602)
Q Consensus 431 ~~~l~~~~~~~~~ 443 (602)
.++++.++...|.
T Consensus 239 ~~~~~~~p~hpyt 251 (327)
T PRK11308 239 KEQIFNNPRHPYT 251 (327)
T ss_pred HHHHhcCCCCHHH
Confidence 9999876554444
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-36 Score=316.85 Aligned_cols=218 Identities=30% Similarity=0.431 Sum_probs=170.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~ 274 (602)
.-.++||||...+| |++||||+||||||||.|+|+|+++|++|+|.++|.+ ..++ ....|+.+-+++|+|..-..
T Consensus 304 ~~Av~~VSf~l~~G-E~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~~~~~~~~r~~~QmvFQdp~~SLn 381 (539)
T COG1123 304 VKAVDDVSFDLREG-ETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLTGGELRRLRRRIQMVFQDPYSSLN 381 (539)
T ss_pred eeeeeeeeeEecCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccccchhhhhhhheEEEEeCcccccC
Confidence 45799999999998 9999999999999999999999999999999999987 3333 44577899999999643221
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~ 352 (602)
| ..++.+.+..+.. ...........+..+.++.+++.+ ....+++.+||
T Consensus 382 -----P----------------------r~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG-- 432 (539)
T COG1123 382 -----P----------------------RMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSG-- 432 (539)
T ss_pred -----c----------------------cccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcCc--
Confidence 1 0111111000000 000001111123444455666655 67888999995
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||+||||||+.+|+++|+|||||+||+.+...+.+.|+++.+ |.|.++||||++.+.. ||||+||++|+|++.|
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999988754 6999999999999999 9999999999999999
Q ss_pred ChhHHhhcchhHHHHHH
Q psy3001 430 SPSVLMKNKASIFYSMA 446 (602)
Q Consensus 430 ~~~~l~~~~~~~~~~~~ 446 (602)
+.+++++.+...|.+..
T Consensus 513 ~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 513 PTEKVFENPQHPYTRKL 529 (539)
T ss_pred CHHHHhcCCCChHHHHH
Confidence 99999988777776554
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-36 Score=304.00 Aligned_cols=208 Identities=26% Similarity=0.430 Sum_probs=159.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++||||++.+| +++||+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|+||++...+
T Consensus 20 ~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-- 96 (287)
T PRK13637 20 KKALDNVNIEIEDG-EFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQL-- 96 (287)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhcc--
Confidence 35899999999998 999999999999999999999999999999999999997654 3567889999999853211
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC--CcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS--PIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lsgs~ 352 (602)
+ . .++.+++... ....... .....+..+.++.++.. .........+| |
T Consensus 97 -------~-------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~~LS--g 147 (287)
T PRK13637 97 -------F-------------E------ETIEKDIAFGPINLGLSE-EEIENRVKRAMNIVGLDYEDYKDKSPFELS--G 147 (287)
T ss_pred -------c-------------c------ccHHHHHHhHHHHCCCCH-HHHHHHHHHHHHHcCCCchhhccCCcccCC--H
Confidence 1 0 0111110000 0000000 01111222333344443 33455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+..++.+.++++.+ +.|||++||+++.+.. ||||++|++|++++.|
T Consensus 148 Gq~qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 148 GQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999988743 7899999999999876 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 228 ~~~~~~~~ 235 (287)
T PRK13637 228 TPREVFKE 235 (287)
T ss_pred CHHHHHhC
Confidence 99887653
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=351.51 Aligned_cols=209 Identities=21% Similarity=0.214 Sum_probs=145.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc----CCCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~----~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
...++|+|+.+.+| |+++|+||||||||||+|+|+|.. .|.+|+|.++|.++.+.. ...++.++|++|+..
T Consensus 74 ~~iL~~vs~~i~~G-e~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~--- 148 (1394)
T TIGR00956 74 FDILKPMDGLIKPG-ELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDV--- 148 (1394)
T ss_pred ceeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccc---
Confidence 44799999999998 999999999999999999999986 578999999999876543 345677999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHH-HHHhhcccCCcc-----cccC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQL-KRLESVSRSPIY-----SHFG 345 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-~~l~~~~~~~~~-----~~~~ 345 (602)
++..... ..++.+.... ..+. ....... ....+.. ..++.+++.... ....
T Consensus 149 --------~~~~lTV--------~E~l~f~~~~----~~~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~~t~vg~~~~ 207 (1394)
T TIGR00956 149 --------HFPHLTV--------GETLDFAARC----KTPQNRPDGVSRE-EYAKHIADVYMATYGLSHTRNTKVGNDFV 207 (1394)
T ss_pred --------cCCCCCH--------HHHHHHHHHh----CCCCCCCCCCCHH-HHHHHHHHHHHHHcCcccccCceeCCCcC
Confidence 1100000 0000000000 0000 0000000 0001111 123334443322 1223
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecc-ccccc-CCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRL-NTIID-SDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l-~~i~~-~d~i~~l~ 421 (602)
..+| |||||||+|||||+.+|++++|||||++||+.++..+.+.|+++.+ |+|+|+++|++ +.+.. +|++++|+
T Consensus 208 ~~LS--GGerkRvsIA~aL~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~ 285 (1394)
T TIGR00956 208 RGVS--GGERKRVSIAEASLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLY 285 (1394)
T ss_pred CCCC--cccchHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEe
Confidence 4566 6999999999999999999999999999999999999999998753 78999999997 46666 99999999
Q ss_pred CceEEeecChhHH
Q psy3001 422 KGLVVEFDSPSVL 434 (602)
Q Consensus 422 ~G~i~~~g~~~~l 434 (602)
+|+++..|+++++
T Consensus 286 ~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 286 EGYQIYFGPADKA 298 (1394)
T ss_pred CCeEEEECCHHHH
Confidence 9999988766544
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-36 Score=306.66 Aligned_cols=205 Identities=24% Similarity=0.317 Sum_probs=156.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+||++..
T Consensus 6 ~~~l~~vs~~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~------ 77 (302)
T TIGR01188 6 FKAVDGVNFKVREG-EVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASV------ 77 (302)
T ss_pred eeEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCC------
Confidence 35799999999998 9999999999999999999999999999999999999865 345678899999997321
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. . .++.+++... ....... .....+..+.++.++...........+| +||||
T Consensus 78 -----~~------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 131 (302)
T TIGR01188 78 -----DE------------D------LTGRENLEMMGRLYGLPK-DEAEERAEELLELFELGEAADRPVGTYS--GGMRR 131 (302)
T ss_pred -----CC------------C------CcHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhHhCCchhhCC--HHHHH
Confidence 10 0 0111110000 0000000 0011122233334444444455556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|||||||++||+.+...+.+.++++. +++|||++||+++.+.. ||+|++|++|+++..|+++++
T Consensus 132 rv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l 211 (302)
T TIGR01188 132 RLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211 (302)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998874 47899999999999987 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 212 ~~ 213 (302)
T TIGR01188 212 KR 213 (302)
T ss_pred HH
Confidence 54
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=309.34 Aligned_cols=207 Identities=22% Similarity=0.336 Sum_probs=160.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|+++...++ .++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~v~Q~~~------- 84 (353)
T PRK10851 15 TQVLNDISLDIPSG-QMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGFVFQHYA------- 84 (353)
T ss_pred eEEEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEEEecCcc-------
Confidence 34799999999998 9999999999999999999999999999999999999976554 4578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-----chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-----SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. . .++.+++..... .... ......+..+.++.++...........+| |
T Consensus 85 ----l~p------------~------~tv~eni~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--g 139 (353)
T PRK10851 85 ----LFR------------H------MTVFDNIAFGLTVLPRRERPN-AAAIKAKVTQLLEMVQLAHLADRYPAQLS--G 139 (353)
T ss_pred ----cCC------------C------CcHHHHHHhhhhhcccccCCC-HHHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 110 0 011111110000 0000 00111222333444555555666677788 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|++++.|
T Consensus 140 Gq~QRvalArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 140 GQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999988753 6899999999999887 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
++++++..+.
T Consensus 220 ~~~~i~~~p~ 229 (353)
T PRK10851 220 TPDQVWREPA 229 (353)
T ss_pred CHHHHHhCcc
Confidence 9999887643
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=311.52 Aligned_cols=208 Identities=21% Similarity=0.331 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ++.++|++|++.
T Consensus 27 ~~~l~~vsl~i~~G-e~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~------- 96 (375)
T PRK09452 27 KEVISNLDLTINNG-EFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVNTVFQSYA------- 96 (375)
T ss_pred eEEEeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEEEEecCcc-------
Confidence 34688999999888 99999999999999999999999999999999999999876654 478999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... .... ......+..+.++.++..+........|| |||||
T Consensus 97 ----lfp------------------~ltv~eNi~~~l~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~~LS--gGq~Q 151 (375)
T PRK09452 97 ----LFP------------------HMTVFENVAFGLRMQKTP-AAEITPRVMEALRMVQLEEFAQRKPHQLS--GGQQQ 151 (375)
T ss_pred ----cCC------------------CCCHHHHHHHHHhhcCCC-HHHHHHHHHHHHHHcCCchhhhCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111122233444555566667777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 152 RVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 231 (375)
T PRK09452 152 RVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPRE 231 (375)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988653 7899999999999887 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 232 i~~~p~~ 238 (375)
T PRK09452 232 IYEEPKN 238 (375)
T ss_pred HHhCccc
Confidence 8876543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-36 Score=301.84 Aligned_cols=204 Identities=22% Similarity=0.283 Sum_probs=157.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 19 ~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~----- 92 (274)
T PRK13647 19 KALKGLSLSIPEG-SKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQV----- 92 (274)
T ss_pred eeeeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhh-----
Confidence 4899999999998 9999999999999999999999999999999999999988777888889999999853211
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+ .. ++.+++... ....... .....+..+.++.++..+........+| ||||||
T Consensus 93 ----~-------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~LS--gG~~qr 146 (274)
T PRK13647 93 ----F-------------SS------TVWDDVAFGPVNMGLDK-DEVERRVEEALKAVRMWDFRDKPPYHLS--YGQKKR 146 (274)
T ss_pred ----c-------------cC------cHHHHHHhhHHHcCCCH-HHHHHHHHHHHHHCCCHHHhcCChhhCC--HHHHHH
Confidence 1 00 111110000 0000000 0011122223334444444555666777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 147 VAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 999999999999999999999999999999999998874 47999999999999976 999999999999999988653
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-36 Score=306.67 Aligned_cols=204 Identities=20% Similarity=0.332 Sum_probs=152.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.|+|+||++.+| +++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+...+++.++|+||+|
T Consensus 97 ~L~~is~~I~~G-e~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~--- 172 (329)
T PRK14257 97 VLHDLNLDIKRN-KVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKP--- 172 (329)
T ss_pred eeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCC---
Confidence 444455555455 8999999999999999999999996 579999999999973 34567889999999983
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc-c---cchhHHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F---CSNLQRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++| ..++. +++... . ....+.........++ ...+ .....+.
T Consensus 173 --------~~~-------------~~ti~------eNi~~~~~~~~~~~~~~~~~~~~~~l~---~~~L~~~l~~~~~~~ 222 (329)
T PRK14257 173 --------TPF-------------EMSIF------DNVAYGPRNNGINDRKILEKIVEKSLK---SAALWDEVKDDLDKA 222 (329)
T ss_pred --------ccC-------------CCcHH------HHHHhHHHhcCCChHHHHHHHHHHHHH---HcCCcchhhhhhhCC
Confidence 333 11111 111000 0 0000000001111122 2211 1234566
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
+.++| ||||||++||||++++|+||||||||++||+.+...+.+.|+...+++|+|+|||+++++.. ||||++|++|
T Consensus 223 ~~~LS--gGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G 300 (329)
T PRK14257 223 GNALS--GGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQG 300 (329)
T ss_pred cccCC--HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 77888 69999999999999999999999999999999999999999988778999999999999998 9999999999
Q ss_pred eEEeecChhHHhhcch
Q psy3001 424 LVVEFDSPSVLMKNKA 439 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~ 439 (602)
++++.|++++++..+.
T Consensus 301 ~i~e~g~~~~l~~~~~ 316 (329)
T PRK14257 301 WIEEAGETKTIFIHPK 316 (329)
T ss_pred EEEEeCCHHHHhcCCC
Confidence 9999999999887543
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-36 Score=295.52 Aligned_cols=207 Identities=28% Similarity=0.411 Sum_probs=156.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ +..++|++|++.
T Consensus 13 ~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~------ 85 (236)
T cd03219 13 LVALDDVSFSVRPG-EIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPR------ 85 (236)
T ss_pred EEEecCceEEecCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccc------
Confidence 34799999999998 9999999999999999999999999999999999999987776554 567999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc----cchh------HHHHHHHHHHHHHHhhcccCCcccccCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNL------QRFYVATSRQLKRLESVSRSPIYSHFGE 346 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 346 (602)
++.. . ++.+++.... .... ........+..+.++.++..........
T Consensus 86 -----l~~~------------~------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 86 -----LFPE------------L------TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred -----cccC------------C------CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 1100 0 0111000000 0000 0000111122233334444444455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.+| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 143 ~LS--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~ 220 (236)
T cd03219 143 ELS--YGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGR 220 (236)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCE
Confidence 677 699999999999999999999999999999999999999998865 57899999999999987 99999999999
Q ss_pred EEeecChhHHhh
Q psy3001 425 VVEFDSPSVLMK 436 (602)
Q Consensus 425 i~~~g~~~~l~~ 436 (602)
+++.++++++..
T Consensus 221 i~~~~~~~~~~~ 232 (236)
T cd03219 221 VIAEGTPDEVRN 232 (236)
T ss_pred EEeecCHHHhcc
Confidence 999998887654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=309.93 Aligned_cols=207 Identities=21% Similarity=0.333 Sum_probs=161.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC--ceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD--GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~--G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++ |+|.++|.++...++ .++.+++++|++.
T Consensus 18 ~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ig~vfQ~~~----- 89 (362)
T TIGR03258 18 NTVLDDLSLEIEAG-ELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRGLALLFQNYA----- 89 (362)
T ss_pred eEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCCEEEEECCcc-----
Confidence 34799999999888 9999999999999999999999999999 999999999977655 3578999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+|. ..++.+++..... .... ......+..+.++.+++..........|| |||
T Consensus 90 ------l~p------------------~~tv~enl~~~l~~~~~~-~~~~~~~v~~~l~~~gL~~~~~~~~~~LS--gGq 142 (362)
T TIGR03258 90 ------LFP------------------HLKVEDNVAFGLRAQKMP-KADIAERVADALKLVGLGDAAAHLPAQLS--GGM 142 (362)
T ss_pred ------cCC------------------CCcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhcCCCchhhCChhhCC--HHH
Confidence 210 0111111110000 0000 00111223333445566666677778888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc---ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA---HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+|||||+.+|++|+|||||++||+.+...+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|+++..|+
T Consensus 143 ~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 143 QQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred HHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999988643 6899999999999887 99999999999999999
Q ss_pred hhHHhhcch
Q psy3001 431 PSVLMKNKA 439 (602)
Q Consensus 431 ~~~l~~~~~ 439 (602)
+++++..+.
T Consensus 223 ~~~~~~~p~ 231 (362)
T TIGR03258 223 PQALYDAPA 231 (362)
T ss_pred HHHHHhCcC
Confidence 999987643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-36 Score=301.64 Aligned_cols=207 Identities=28% Similarity=0.377 Sum_probs=160.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..++.
T Consensus 21 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~---- 95 (279)
T PRK13650 21 YTLNDVSFHVKQG-EWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFV---- 95 (279)
T ss_pred eeeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcc----
Confidence 4899999999998 99999999999999999999999999999999999999887888888999999998532110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
.. ++.+++.... ...... .....+..+.++.++..+........+| +|||||
T Consensus 96 ------------------~~------tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~qr 148 (279)
T PRK13650 96 ------------------GA------TVEDDVAFGLENKGIPH-EEMKERVNEALELVGMQDFKEREPARLS--GGQKQR 148 (279)
T ss_pred ------------------cc------cHHHHHHhhHHhCCCCH-HHHHHHHHHHHHHCCCHhHhhCCcccCC--HHHHHH
Confidence 00 1111100000 000000 0011122233334444444555566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.
T Consensus 149 v~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13650 149 VAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELF 228 (279)
T ss_pred HHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 9999999999999999999999999999999999988753 79999999999998669999999999999999988876
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 229 ~~ 230 (279)
T PRK13650 229 SR 230 (279)
T ss_pred cC
Confidence 54
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-36 Score=312.27 Aligned_cols=206 Identities=25% Similarity=0.389 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++..++...+++.+++++|++...+.+
T Consensus 16 ~~vL~~vs~~i~~G-eiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~-- 92 (402)
T PRK09536 16 TTVLDGVDLSVREG-SLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEF-- 92 (402)
T ss_pred EEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCC--
Confidence 45899999999998 999999999999999999999999999999999999999988889999999999974322110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc------cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
++.+++.... ...... ....+..+.++.++...........+|
T Consensus 93 ---------------------------tv~e~v~~~~~~~~~~~~~~~~--~~~~~v~~~le~vgl~~~~~~~~~~LS-- 141 (402)
T PRK09536 93 ---------------------------DVRQVVEMGRTPHRSRFDTWTE--TDRAAVERAMERTGVAQFADRPVTSLS-- 141 (402)
T ss_pred ---------------------------CHHHHHHhccchhcccccCCCH--HHHHHHHHHHHHcCCchhhcCChhhCC--
Confidence 0111100000 000000 011122233334455455555566777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+|||||++|||||+++|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. |||+++|++|+++..|
T Consensus 142 gGerQRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G 221 (402)
T PRK09536 142 GGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAG 221 (402)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEec
Confidence 699999999999999999999999999999999999999999875 47899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 222 ~~~ev~~~ 229 (402)
T PRK09536 222 PPADVLTA 229 (402)
T ss_pred CHHHHhCc
Confidence 99988754
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-36 Score=309.28 Aligned_cols=211 Identities=22% Similarity=0.319 Sum_probs=161.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe----ecCCCChHHHh----hccceeccc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV----DIRTLGLHTLR----SRLTIIPQV 268 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~----~~~~~~~~~~~----~~i~~v~Q~ 268 (602)
....++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...++ +.++|++|+
T Consensus 36 ~~~~l~~vsf~i~~G-ei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~ 114 (382)
T TIGR03415 36 LVVGVANASLDIEEG-EICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQK 114 (382)
T ss_pred CEEEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECC
Confidence 456899999999998 999999999999999999999999999999999996 56666655443 579999997
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
+. ++. .. ++.+++.... ..... ......+..+.++.+++.+........
T Consensus 115 ~~-----------l~p------------~~------Tv~eNi~~~~~~~g~~-~~~~~~~a~e~le~vgL~~~~~~~~~~ 164 (382)
T TIGR03415 115 FA-----------LMP------------WL------TVEENVAFGLEMQGMP-EAERRKRVDEQLELVGLAQWADKKPGE 164 (382)
T ss_pred Cc-----------CCC------------CC------cHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 32 110 01 1111110000 00000 001112233344456665556666677
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++|||||||++||+.++..+.+.+.++.+ ++|+|+|||+++++.. ||+|++|++|+
T Consensus 165 LS--gGq~QRV~LARALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~ 242 (382)
T TIGR03415 165 LS--GGMQQRVGLARAFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGR 242 (382)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 88 6999999999999999999999999999999999999999988753 7999999999999877 99999999999
Q ss_pred EEeecChhHHhhcchh
Q psy3001 425 VVEFDSPSVLMKNKAS 440 (602)
Q Consensus 425 i~~~g~~~~l~~~~~~ 440 (602)
+++.|++++++..+..
T Consensus 243 iv~~g~~~ei~~~p~~ 258 (382)
T TIGR03415 243 IIQHGTPEEIVLNPAN 258 (382)
T ss_pred EEEecCHHHHhhCcch
Confidence 9999999998765433
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-36 Score=304.30 Aligned_cols=207 Identities=20% Similarity=0.312 Sum_probs=158.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------------------------CC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------------------------LG 254 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------------------------~~ 254 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+... ..
T Consensus 21 ~~l~~vsl~i~~G-e~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (305)
T PRK13651 21 KALDNVSVEINQG-EFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKK 99 (305)
T ss_pred cceeeeEEEEeCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccccccccccccccccccch
Confidence 4799999999998 9999999999999999999999999999999999876531 13
Q ss_pred hHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHh
Q psy3001 255 LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLE 333 (602)
Q Consensus 255 ~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~ 333 (602)
...+++.++|++|++..++ + . .++.+++.... ...... .....+..+.++
T Consensus 100 ~~~~~~~ig~v~Q~~~~~l---------~-------------~------~tv~e~i~~~~~~~~~~~-~~~~~~~~~~l~ 150 (305)
T PRK13651 100 IKEIRRRVGVVFQFAEYQL---------F-------------E------QTIEKDIIFGPVSMGVSK-EEAKKRAAKYIE 150 (305)
T ss_pred HHHHHhceEEEeeCccccc---------c-------------c------ccHHHHHHhhHHHcCCCH-HHHHHHHHHHHH
Confidence 4567889999999853221 1 0 01111110000 000000 011122333444
Q ss_pred hcccC-CcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc
Q psy3001 334 SVSRS-PIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411 (602)
Q Consensus 334 ~~~~~-~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i 411 (602)
.+++. .........+| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++. .++|||+|||+++.+
T Consensus 151 ~~gL~~~~~~~~~~~LS--gGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~ 228 (305)
T PRK13651 151 LVGLDESYLQRSPFELS--GGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNV 228 (305)
T ss_pred HcCCChhhhhCChhhCC--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHH
Confidence 55554 34556667788 699999999999999999999999999999999999999998864 479999999999998
Q ss_pred cc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 412 ID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 412 ~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
.. ||||++|++|++++.|++++++..
T Consensus 229 ~~~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 229 LEWTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred HHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 77 999999999999999999988754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-36 Score=305.48 Aligned_cols=206 Identities=22% Similarity=0.324 Sum_probs=156.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++|+||++..
T Consensus 20 ~~~l~~vsl~i~~G-ei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig~v~q~~~~------ 91 (306)
T PRK13537 20 KLVVDGLSFHVQRG-ECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVGVVPQFDNL------ 91 (306)
T ss_pred eEEEecceEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEEEEeccCcC------
Confidence 45899999999998 999999999999999999999999999999999999987654 4578899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++.. ........ .....+..+.++.++...........+| +||||
T Consensus 92 -----~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 145 (306)
T PRK13537 92 -----DP------------DF------TVRENLLVFGRYFGLSA-AAARALVPPLLEFAKLENKADAKVGELS--GGMKR 145 (306)
T ss_pred -----CC------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchHhcCchhhCC--HHHHH
Confidence 10 00 11111000 00000000 0001112222333333333344445666 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|+|||||++||+.++..+++.++++. +++|||++||+++++.. ||+|++|++|+++..|+++++
T Consensus 146 rl~la~aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 225 (306)
T PRK13537 146 RLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHAL 225 (306)
T ss_pred HHHHHHHHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999875 47999999999999988 999999999999999999888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 226 ~~~ 228 (306)
T PRK13537 226 IES 228 (306)
T ss_pred Hhc
Confidence 643
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-36 Score=294.89 Aligned_cols=204 Identities=28% Similarity=0.435 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 14 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~---- 88 (241)
T cd03256 14 KKALKDVSLSINPG-EFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFN---- 88 (241)
T ss_pred cEEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCc----
Confidence 45899999999998 999999999999999999999999999999999999988766 4567889999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccc---------hhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS---------NLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
++. ..+ +.+++...... .... .....+..+.++.++.........
T Consensus 89 -------~~~------------~~t------v~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~ 142 (241)
T cd03256 89 -------LIE------------RLS------VLENVLSGRLGRRSTWRSLFGLFP-KEEKQRALAALERVGLLDKAYQRA 142 (241)
T ss_pred -------ccc------------cCc------HHHHHHhhhcccchhhhhhcccCc-HHHHHHHHHHHHHcCChhhhCCCc
Confidence 110 001 00000000000 0000 001111222333444444445556
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||++||+++.+.. ||++++|++
T Consensus 143 ~~LS--~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~ 220 (241)
T cd03256 143 DQLS--GGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKD 220 (241)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6777 699999999999999999999999999999999999999998874 37899999999999986 999999999
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|++++.++++++
T Consensus 221 G~i~~~~~~~~~ 232 (241)
T cd03256 221 GRIVFDGPPAEL 232 (241)
T ss_pred CEEEeecCHHHh
Confidence 999999888775
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-36 Score=291.31 Aligned_cols=197 Identities=23% Similarity=0.383 Sum_probs=147.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++..
T Consensus 13 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~------ 83 (213)
T cd03259 13 VRALDDLSLTVEPG-EFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYAL------ 83 (213)
T ss_pred eeeecceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhh------
Confidence 35799999999998 9999999999999999999999999999999999999876543 46789999997431
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++.... ...... .....+..+.++.++...........+| +||||
T Consensus 84 -----~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 137 (213)
T cd03259 84 -----FP------------HL------TVAENIAFGLKLRGVPK-AEIRARVRELLELVGLEGLLNRYPHELS--GGQQQ 137 (213)
T ss_pred -----cc------------CC------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhcChhhCC--HHHHH
Confidence 10 00 1111100000 000000 0001112222334444444445556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++++. .++|||++||+++.+.. ||++++|++|++++.|
T Consensus 138 rl~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 138 RVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998864 37899999999999887 9999999999997654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-36 Score=310.97 Aligned_cols=206 Identities=20% Similarity=0.277 Sum_probs=158.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ++.++|++|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~v~Q~~~------- 85 (369)
T PRK11000 16 VVISKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGMVFQSYA------- 85 (369)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEEEeCCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999776553 468999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. . .++.+++..... ..... .....+..+.++.++...........|| |||||
T Consensus 86 ----l~~------------~------~tv~eni~~~~~~~~~~~-~~~~~~~~~~l~~lgL~~~~~~~~~~LS--gGq~Q 140 (369)
T PRK11000 86 ----LYP------------H------LSVAENMSFGLKLAGAKK-EEINQRVNQVAEVLQLAHLLDRKPKALS--GGQRQ 140 (369)
T ss_pred ----cCC------------C------CCHHHHHHhHHhhcCCCH-HHHHHHHHHHHHHcCChhhhcCChhhCC--HHHHH
Confidence 110 0 011111110000 00000 0111122333344555555556667788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 141 RvaLAraL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~ 220 (369)
T PRK11000 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (369)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988643 7899999999999887 99999999999999999998
Q ss_pred Hhhcc
Q psy3001 434 LMKNK 438 (602)
Q Consensus 434 l~~~~ 438 (602)
++..+
T Consensus 221 i~~~p 225 (369)
T PRK11000 221 LYHYP 225 (369)
T ss_pred HHhCc
Confidence 87653
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-36 Score=292.37 Aligned_cols=194 Identities=25% Similarity=0.338 Sum_probs=146.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 17 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~----- 90 (216)
T TIGR00960 17 PALDNLNFHITKG-EMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHR----- 90 (216)
T ss_pred eEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCcc-----
Confidence 4799999999998 99999999999999999999999999999999999998766543 46789999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| |||
T Consensus 91 ------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~ 143 (216)
T TIGR00960 91 ------LLS------------DR------TVYDNVAFPLRIIGVPP-RDANERVSAALEKVGLEGKAHALPMQLS--GGE 143 (216)
T ss_pred ------ccc------------cc------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--HHH
Confidence 110 00 1111100000 000000 0011122233334444444455556777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|+|||+++.+.. ||++++|++|++
T Consensus 144 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 144 QQRVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999999998864 47899999999999987 999999999974
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-36 Score=299.05 Aligned_cols=208 Identities=28% Similarity=0.437 Sum_probs=157.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++|++|++.
T Consensus 37 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--- 112 (269)
T cd03294 37 TVGVNDVSLDVREG-EIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQSFA--- 112 (269)
T ss_pred ceEeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcEEEEecCcc---
Confidence 45799999999998 9999999999999999999999999999999999999887665443 467999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 113 --------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 163 (269)
T cd03294 113 --------LLP------------HR------TVLENVAFGLEVQGVPR-AEREERAAEALELVGLEGWEHKYPDELS--G 163 (269)
T ss_pred --------cCC------------CC------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCCcccCC--H
Confidence 110 00 1111100000 000000 0011122233334444444455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 164 Gq~qrv~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g 243 (269)
T cd03294 164 GMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999998864 3 7899999999999877 9999999999999999
Q ss_pred ChhHHhhcc
Q psy3001 430 SPSVLMKNK 438 (602)
Q Consensus 430 ~~~~l~~~~ 438 (602)
++++++...
T Consensus 244 ~~~~~~~~~ 252 (269)
T cd03294 244 TPEEILTNP 252 (269)
T ss_pred CHHHHHhCc
Confidence 998887643
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-35 Score=310.53 Aligned_cols=209 Identities=28% Similarity=0.429 Sum_probs=161.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++.
T Consensus 41 ~~~L~~isl~i~~G-ei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~--- 116 (400)
T PRK10070 41 SLGVKDASLAIEEG-EIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA--- 116 (400)
T ss_pred eEEEEeEEEEEcCC-CEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc---
Confidence 35799999999998 9999999999999999999999999999999999999988776543 357999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. +.++.+++.... ...... .....+..+.++.++...........+| |
T Consensus 117 --------l~~------------------~~Tv~enl~~~~~~~~~~~-~~~~~~~~e~L~~~gL~~~~~~~~~~LS--g 167 (400)
T PRK10070 117 --------LMP------------------HMTVLDNTAFGMELAGINA-EERREKALDALRQVGLENYAHSYPDELS--G 167 (400)
T ss_pred --------CCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCChhhhcCcccCC--H
Confidence 110 011111110000 000000 0111222334445555555566677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++. .++|+|++||+++++.. ||+|++|++|+++..|
T Consensus 168 Gq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g 247 (400)
T PRK10070 168 GMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVG 247 (400)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 37899999999999877 9999999999999999
Q ss_pred ChhHHhhcch
Q psy3001 430 SPSVLMKNKA 439 (602)
Q Consensus 430 ~~~~l~~~~~ 439 (602)
++++++..+.
T Consensus 248 ~~~~l~~~~~ 257 (400)
T PRK10070 248 TPDEILNNPA 257 (400)
T ss_pred CHHHHHhCcc
Confidence 9998876543
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-36 Score=301.98 Aligned_cols=207 Identities=24% Similarity=0.376 Sum_probs=158.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++...+
T Consensus 21 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 98 (286)
T PRK13646 21 QAIHDVNTEFEQG-KYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQL- 98 (286)
T ss_pred CceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhheEEEecChHhcc-
Confidence 4799999999998 99999999999999999999999999999999999998653 34568889999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ .. ++.+++... ....... .....+..+.+..++.. .........+| +
T Consensus 99 --------~-------------~~------tv~e~i~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~LS--g 148 (286)
T PRK13646 99 --------F-------------ED------TVEREIIFGPKNFKMNL-DEVKNYAHRLLMDLGFSRDVMSQSPFQMS--G 148 (286)
T ss_pred --------c-------------hh------hHHHHHHhhHHHcCCCH-HHHHHHHHHHHHHcCCChhhhhCCcccCC--H
Confidence 1 00 111110000 0000000 00111222333345543 34455667788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+..++.+.++++. .++|||++||+++.+.. ||+|++|++|++++.|
T Consensus 149 Gq~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g 228 (286)
T PRK13646 149 GQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQT 228 (286)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998864 37999999999999876 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 229 ~~~~~~~~ 236 (286)
T PRK13646 229 SPKELFKD 236 (286)
T ss_pred CHHHHHhC
Confidence 98887654
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=293.67 Aligned_cols=206 Identities=24% Similarity=0.362 Sum_probs=153.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++.
T Consensus 15 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~------- 84 (239)
T cd03296 15 FVALDDVSLDIPSG-ELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGFVFQHYA------- 84 (239)
T ss_pred EEeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEEEecCCc-------
Confidence 45799999999998 9999999999999999999999999999999999998876543 2568999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchh---HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL---QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++.... .... ........+..+.++.++...........+| +|
T Consensus 85 ----~~~------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 140 (239)
T cd03296 85 ----LFR------------HMT------VFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLS--GG 140 (239)
T ss_pred ----ccC------------CCC------HHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCC--HH
Confidence 110 001 111100000 0000 0000001111222333444333445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.|+
T Consensus 141 ~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (239)
T cd03296 141 QRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGT 220 (239)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecC
Confidence 99999999999999999999999999999999999999988743 6899999999999877 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 221 ~~~~~~~ 227 (239)
T cd03296 221 PDEVYDH 227 (239)
T ss_pred HHHHhcC
Confidence 8887653
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=292.38 Aligned_cols=203 Identities=23% Similarity=0.310 Sum_probs=152.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|++.
T Consensus 15 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~------- 85 (220)
T cd03263 15 KPAVDDLSLNVYKG-EIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGYCPQFDA------- 85 (220)
T ss_pred ceeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEEecCcCC-------
Confidence 35899999999998 99999999999999999999999999999999999988654 3566788999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 86 ----~~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 140 (220)
T cd03263 86 ----LFD------------EL------TVREHLRFYARLKGLPK-SEIKEEVELLLRVLGLTDKANKRARTLS--GGMKR 140 (220)
T ss_pred ----ccc------------cC------CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCHHHHhChhhhCC--HHHHH
Confidence 110 00 111110000 0000000 0001111222223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 141 rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 141 KLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HHHHHHHHhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 999999999999999999999999999999999999987667999999999999987 999999999999998887653
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-36 Score=293.04 Aligned_cols=202 Identities=26% Similarity=0.364 Sum_probs=152.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc-----CCCCceEEECCeecCCCC--hHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~-----~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 14 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 91 (227)
T cd03260 14 HALKDISLDIPKG-EITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPN- 91 (227)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCch-
Confidence 5799999999998 999999999999999999999999 999999999999987766 5667889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCccccc--CCcC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHF--GETV 348 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~l 348 (602)
++ .. ++.+++.... ............+..+.++.++..+..... ...+
T Consensus 92 ----------~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~L 142 (227)
T cd03260 92 ----------PF-------------PG------SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGL 142 (227)
T ss_pred ----------hc-------------cc------cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccC
Confidence 11 00 1111100000 000000000011122223333443333333 4667
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.|++..+.+|+|++||+++.+.. ||++++|++|++++
T Consensus 143 S--gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 220 (227)
T cd03260 143 S--GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVE 220 (227)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEE
Confidence 7 69999999999999999999999999999999999999999987545899999999999887 99999999999999
Q ss_pred ecChhH
Q psy3001 428 FDSPSV 433 (602)
Q Consensus 428 ~g~~~~ 433 (602)
.|++++
T Consensus 221 ~g~~~~ 226 (227)
T cd03260 221 FGPTEQ 226 (227)
T ss_pred ecCccc
Confidence 887654
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-36 Score=272.92 Aligned_cols=201 Identities=25% Similarity=0.350 Sum_probs=151.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++||||...+| +++||.|+|||||||++++|++++.|++|.|.+||.|+.. .+..+|++||+++.+.
T Consensus 17 AvrdVSF~ae~G-ei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl~~e~---------- 84 (245)
T COG4555 17 AVRDVSFEAEEG-EITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVLFGER---------- 84 (245)
T ss_pred hhhheeEEeccc-eEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhcceecCCc----------
Confidence 689999999998 9999999999999999999999999999999999999876 5678899999988431
Q ss_pred ceeEeeecccceeeeccccceeeccccccccc-ccccchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TPFCSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+.+ ..-+.++++. +.....+. +..++..+..+. +.........-..+| -|+||
T Consensus 85 glY-------------------~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~---l~l~~~~~rRv~~~S--~G~kq 140 (245)
T COG4555 85 GLY-------------------ARLTARENLKYFARLNGLSRKEIKARIAELSKR---LQLLEYLDRRVGEFS--TGMKQ 140 (245)
T ss_pred Chh-------------------hhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH---hChHHHHHHHHhhhc--hhhHH
Confidence 110 0001111100 00000000 011111222221 222222223333455 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
||+|||||+++|++++||||||+||..+...+.+.+++.+. +++||+.||.++++.. ||+|+++++|+++..|+.+.+
T Consensus 141 kV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l 220 (245)
T COG4555 141 KVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220 (245)
T ss_pred HHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHH
Confidence 99999999999999999999999999999999999988765 8999999999999997 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 221 ~~ 222 (245)
T COG4555 221 DA 222 (245)
T ss_pred HH
Confidence 54
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-36 Score=281.19 Aligned_cols=224 Identities=26% Similarity=0.359 Sum_probs=171.7
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
.+-..++||||+..+| ++++|+|||||||||++++|+|+|+|++|+|.++|.++..+++..+ +..|+--+|.+.
T Consensus 15 GGl~Al~~Vsl~v~~G-ei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~r---- 89 (250)
T COG0411 15 GGLTAVNDVSLEVRPG-EIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITR---- 89 (250)
T ss_pred CCEEEEeceeEEEcCC-eEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccccc----
Confidence 3567999999999998 9999999999999999999999999999999999999999998875 456777888632
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+|........+..-..... ..... ...............+..+.++.+++.+.......+|| +||
T Consensus 90 -------lF~~lTVlENv~va~~~~~----~~~~~--l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~Ls--yG~ 154 (250)
T COG0411 90 -------LFPGLTVLENVAVGAHARL----GLSGL--LGRPRARKEEREARERARELLEFVGLGELADRPAGNLS--YGQ 154 (250)
T ss_pred -------ccCCCcHHHHHHHHhhhhh----hhhhh--hccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcCC--hhH
Confidence 2211000000000000000 00000 00000111223344455566677888777777777888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|+|+.|||||+.+|++|+||||.+++.+.....+.+.++++.+ +.||++|.||+..+.. ||||+||+.|++++.|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999874 4999999999999999 999999999999999999
Q ss_pred hHHhhcch
Q psy3001 432 SVLMKNKA 439 (602)
Q Consensus 432 ~~l~~~~~ 439 (602)
+++.+++.
T Consensus 235 ~eV~~dp~ 242 (250)
T COG0411 235 EEVRNNPR 242 (250)
T ss_pred HHHhcCHH
Confidence 99987643
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=291.86 Aligned_cols=207 Identities=33% Similarity=0.510 Sum_probs=157.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 86 (237)
T cd03252 15 PVILDNISLRIKPG-EVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENV------- 86 (237)
T ss_pred ccceeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCch-------
Confidence 34799999999998 9999999999999999999999999999999999999887777778889999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+ +.+++.... ............ ...+.+..+ +..........++| +
T Consensus 87 ----~~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LS--g 141 (237)
T cd03252 87 ----LF-------------NRS------IRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLS--G 141 (237)
T ss_pred ----hc-------------cch------HHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCC--H
Confidence 11 001 111000000 000001000000 001111111 12222344556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.++++
T Consensus 142 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~ 221 (237)
T cd03252 142 GQRQRIAIARALIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHD 221 (237)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999999887789999999999998669999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++..
T Consensus 222 ~~~~~ 226 (237)
T cd03252 222 ELLAE 226 (237)
T ss_pred HHHhc
Confidence 87765
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=309.11 Aligned_cols=208 Identities=24% Similarity=0.369 Sum_probs=160.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+.+|++|+|.++|.++...++ .++.++|++|++.
T Consensus 32 ~~~l~~vsl~i~~G-e~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~vfQ~~~------- 101 (377)
T PRK11607 32 QHAVDDVSLTIYKG-EIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPINMMFQSYA------- 101 (377)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEEEEeCCCc-------
Confidence 34788899999888 9999999999999999999999999999999999999987654 4678999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... .... ......+..+.++.++..+........|| |||||
T Consensus 102 ----lfp------------------~ltv~eNi~~~l~~~~~~-~~~~~~~v~~~l~~l~L~~~~~~~~~~LS--gGq~Q 156 (377)
T PRK11607 102 ----LFP------------------HMTVEQNIAFGLKQDKLP-KAEIASRVNEMLGLVHMQEFAKRKPHQLS--GGQRQ 156 (377)
T ss_pred ----cCC------------------CCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 220 0111111111000 0000 00111222333445555566666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+|||||++||+.++..+.+.++++. .+.|+|+|||+++++.. ||++++|++|++++.|++++
T Consensus 157 RVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~ 236 (377)
T PRK11607 157 RVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEE 236 (377)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHH
Confidence 9999999999999999999999999999999998887753 36899999999999877 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 237 ~~~~p~~ 243 (377)
T PRK11607 237 IYEHPTT 243 (377)
T ss_pred HHhCCcc
Confidence 8876443
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=293.79 Aligned_cols=206 Identities=24% Similarity=0.396 Sum_probs=157.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 85 (242)
T cd03295 15 KAVNNLNLEIAKG-EFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYVIQQIG-------- 85 (242)
T ss_pred eEeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEEccCcc--------
Confidence 4799999999998 9999999999999999999999999999999999999987777777889999999732
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCC--cccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSP--IYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~lsgs~Gq~ 355 (602)
++. ..+ +.+++... ...... ......+..+.++.++..+ ........+| +|||
T Consensus 86 ---~~~------------~~t------v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS--~G~~ 141 (242)
T cd03295 86 ---LFP------------HMT------VEENIALVPKLLKWP-KEKIRERADELLALVGLDPAEFADRYPHELS--GGQQ 141 (242)
T ss_pred ---ccC------------CCc------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCCcHHHHhcChhhCC--HHHH
Confidence 110 001 11110000 000000 0001112223333444433 3445556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.++++
T Consensus 142 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 221 (242)
T cd03295 142 QRVGVARALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPD 221 (242)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHH
Confidence 999999999999999999999999999999999999988743 7899999999999877 9999999999999999888
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 222 ~~~~~ 226 (242)
T cd03295 222 EILRS 226 (242)
T ss_pred HHHcC
Confidence 77543
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=300.91 Aligned_cols=207 Identities=20% Similarity=0.345 Sum_probs=157.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++..++
T Consensus 20 ~~l~~vsl~i~~G-e~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 97 (288)
T PRK13643 20 RALFDIDLEVKKG-SYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQL- 97 (288)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHHHHhhEEEEecCcchhc-
Confidence 4799999999998 9999999999999999999999999999999999999853 335678899999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ .. ++.+.+... ....... .....+..+.++.++.. .........+| +
T Consensus 98 --------~-------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~~LS--g 147 (288)
T PRK13643 98 --------F-------------EE------TVLKDVAFGPQNFGIPK-EKAEKIAAEKLEMVGLADEFWEKSPFELS--G 147 (288)
T ss_pred --------c-------------cc------hHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCChhhccCCcccCC--H
Confidence 1 00 111110000 0000000 00111222333344443 23455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||+|++|++|++++.|+
T Consensus 148 GqkqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 148 GQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998864 47899999999999976 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 228 ~~~~~~~ 234 (288)
T PRK13643 228 PSDVFQE 234 (288)
T ss_pred HHHHHcC
Confidence 9988653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-35 Score=292.63 Aligned_cols=203 Identities=29% Similarity=0.430 Sum_probs=158.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 16 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~------- 87 (241)
T PRK14250 16 KEILKDISVKFEGG-AIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPH------- 87 (241)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCch-------
Confidence 34799999999998 9999999999999999999999999999999999999987777788889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
++ ..+ +.+++... ...... ..+..+.++.++.. .........+| +|||
T Consensus 88 ----~~-------------~~t------v~e~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~ 137 (241)
T PRK14250 88 ----LF-------------EGT------VKDNIEYGPMLKGEK-----NVDVEYYLSIVGLNKEYATRDVKNLS--GGEA 137 (241)
T ss_pred ----hc-------------hhh------HHHHHhcchhhcCcH-----HHHHHHHHHHcCCCHHHhhCCcccCC--HHHH
Confidence 11 101 11110000 000000 01112222233332 23344556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.++++
T Consensus 138 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (241)
T PRK14250 138 QRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTY 217 (241)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999988643 7899999999999887 9999999999999999998
Q ss_pred HHhhcc
Q psy3001 433 VLMKNK 438 (602)
Q Consensus 433 ~l~~~~ 438 (602)
+++..+
T Consensus 218 ~~~~~~ 223 (241)
T PRK14250 218 DFFTNP 223 (241)
T ss_pred HHhcCC
Confidence 887643
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=290.05 Aligned_cols=202 Identities=23% Similarity=0.300 Sum_probs=151.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++..
T Consensus 13 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~------ 84 (220)
T cd03265 13 FEAVRGVSFRVRRG-EIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIVFQDLSV------ 84 (220)
T ss_pred EEeeeceeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEecCCccc------
Confidence 35799999999998 9999999999999999999999999999999999998765 335667889999997421
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++... ...... ......+..+.++.++..+........+| +||||
T Consensus 85 -----~~------------~~------tv~~~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 138 (220)
T cd03265 85 -----DD------------EL------TGWENLYIHARLYGVP-GAERRERIDELLDFVGLLEAADRLVKTYS--GGMRR 138 (220)
T ss_pred -----cc------------cC------cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHhhCChhhCC--HHHHH
Confidence 10 00 011110000 000000 00011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. + ++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 139 r~~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (220)
T cd03265 139 RLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEE 218 (220)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHH
Confidence 9999999999999999999999999999999999998864 3 6899999999999987 99999999999998887655
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-35 Score=300.96 Aligned_cols=205 Identities=23% Similarity=0.332 Sum_probs=157.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++||||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++.. .....+++.++|++|++...+
T Consensus 21 ~~L~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l- 98 (290)
T PRK13634 21 RALYDVNVSIPSG-SYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQL- 98 (290)
T ss_pred cceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhhEEEEeeCchhhh-
Confidence 4799999999998 9999999999999999999999999999999999999863 245567889999999853211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ . .++.+++... ......... .+..+.++.++.. .........+|
T Consensus 99 --------~-------------~------~tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~~LS- 147 (290)
T PRK13634 99 --------F-------------E------ETVEKDICFGPMNFGVSEEDAK---QKAREMIELVGLPEELLARSPFELS- 147 (290)
T ss_pred --------h-------------h------hhHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHCCCChhhhhCCcccCC-
Confidence 1 0 0111110000 000001111 1222333344543 33455566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|||++||+++.+.. ||||++|++|++++
T Consensus 148 -gGq~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~ 226 (290)
T PRK13634 148 -GGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFL 226 (290)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999988743 7899999999999977 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++++..
T Consensus 227 ~g~~~~~~~~ 236 (290)
T PRK13634 227 QGTPREIFAD 236 (290)
T ss_pred ECCHHHHhcC
Confidence 9998887654
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-35 Score=292.09 Aligned_cols=205 Identities=30% Similarity=0.444 Sum_probs=155.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++|++|++.
T Consensus 19 ~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~----- 92 (233)
T cd03258 19 TALKDVSLSVPKG-EIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFN----- 92 (233)
T ss_pred eeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcc-----
Confidence 5899999999998 99999999999999999999999999999999999998776543 34788999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +||
T Consensus 93 ------~~~------------~~t------~~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~ 145 (233)
T cd03258 93 ------LLS------------SRT------VFENVALPLEIAGVPK-AEIEERVLELLELVGLEDKADAYPAQLS--GGQ 145 (233)
T ss_pred ------cCC------------CCc------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCChhhhhcChhhCC--HHH
Confidence 110 001 11110000 0000000 0011112222334444444444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.++++. + ++|+|++||+++.+.. ||++++|++|++++.+++
T Consensus 146 ~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 225 (233)
T cd03258 146 KQRVGIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTV 225 (233)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999998864 3 7899999999999987 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 226 ~~~~~ 230 (233)
T cd03258 226 EEVFA 230 (233)
T ss_pred HHHhc
Confidence 77654
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-36 Score=288.61 Aligned_cols=195 Identities=28% Similarity=0.407 Sum_probs=147.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 14 ~~il~~vs~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 88 (211)
T cd03225 14 RPALDDISLTIKKG-EFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQF---- 88 (211)
T ss_pred eeeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhc----
Confidence 35799999999998 9999999999999999999999999999999999999987777778899999999742100
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ .. ++.+++.... ...... .....+..+.++.++...........+| +||||
T Consensus 89 -----~-------------~~------t~~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 141 (211)
T cd03225 89 -----F-------------GP------TVEEEVAFGLENLGLPE-EEIEERVEEALELVGLEGLRDRSPFTLS--GGQKQ 141 (211)
T ss_pred -----C-------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCcHhhhcCCcccCC--HHHHH
Confidence 0 00 1111100000 000000 0001111222333333333445556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
|++|||||+.+|++|||||||++||+.++..+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 142 rv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 142 RVAIAGVLAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999999999999988753 7899999999999988 99999999884
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=297.24 Aligned_cols=206 Identities=28% Similarity=0.392 Sum_probs=160.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 20 ~~~l~~vsl~i~~G-e~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~---- 94 (279)
T PRK13635 20 TYALKDVSFSVYEG-EWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQF---- 94 (279)
T ss_pred ccceeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhc----
Confidence 34899999999998 9999999999999999999999999999999999999988777778889999999842111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... ......... .+..+.+..++..+........+| +||
T Consensus 95 -----~-------------~~------tv~enl~~~~~~~~~~~~~~~---~~~~~~l~~~gL~~~~~~~~~~LS--~G~ 145 (279)
T PRK13635 95 -----V-------------GA------TVQDDVAFGLENIGVPREEMV---ERVDQALRQVGMEDFLNREPHRLS--GGQ 145 (279)
T ss_pred -----c-------------cc------cHHHHHhhhHhhCCCCHHHHH---HHHHHHHHHcCChhhhhCCcccCC--HHH
Confidence 1 00 111110000 000001111 112222334444445555666777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||+++++++|++++.|+.+
T Consensus 146 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (279)
T PRK13635 146 KQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225 (279)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999998753 78999999999998779999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 226 ~~~~~ 230 (279)
T PRK13635 226 EIFKS 230 (279)
T ss_pred HHhcC
Confidence 87654
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-35 Score=298.85 Aligned_cols=208 Identities=24% Similarity=0.324 Sum_probs=159.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++. ..+...+++.++|++|++...+
T Consensus 19 ~~~l~~vs~~i~~G-e~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~-- 95 (283)
T PRK13636 19 THALKGININIKKG-EVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQL-- 95 (283)
T ss_pred CeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhEEEEecCcchhh--
Confidence 35899999999998 999999999999999999999999999999999999984 2345678889999999742111
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++.... ..... ......+....++.++...........+| +||
T Consensus 96 -------~-------------~~------tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gL~~~~~~~~~~LS--~G~ 146 (283)
T PRK13636 96 -------F-------------SA------SVYQDVSFGAVNLKLP-EDEVRKRVDNALKRTGIEHLKDKPTHCLS--FGQ 146 (283)
T ss_pred -------c-------------cc------cHHHHHHhHHHHcCCC-HHHHHHHHHHHHHHCCChhhhhCCcccCC--HHH
Confidence 1 00 1111110000 00000 00011122233344555555556667777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 147 ~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~ 226 (283)
T PRK13636 147 KKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 226 (283)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988753 7899999999999986 999999999999999999
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
+++...
T Consensus 227 ~~~~~~ 232 (283)
T PRK13636 227 KEVFAE 232 (283)
T ss_pred HHHhcC
Confidence 887654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=297.49 Aligned_cols=207 Identities=19% Similarity=0.301 Sum_probs=159.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...
T Consensus 18 ~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~------ 90 (277)
T PRK13652 18 EALNNINFIAPRN-SRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQ------ 90 (277)
T ss_pred ceeeEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccc------
Confidence 4799999999998 999999999999999999999999999999999999988777778888999999974211
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++ . .++.+++... ....... .....+..+.++.++..+........+| +|||||
T Consensus 91 ---~~-------------~------~tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Gq~qr 145 (277)
T PRK13652 91 ---IF-------------S------PTVEQDIAFGPINLGLDE-ETVAHRVSSALHMLGLEELRDRVPHHLS--GGEKKR 145 (277)
T ss_pred ---cc-------------c------ccHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHCCChhHhcCCcccCC--HHHHHH
Confidence 11 0 0111110000 0000000 0001112223334444444555566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+.. ||++++|++|+++..|+++++
T Consensus 146 l~laraL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~ 225 (277)
T PRK13652 146 VAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEI 225 (277)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHH
Confidence 9999999999999999999999999999999999988653 7899999999999976 999999999999999999888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
+..
T Consensus 226 ~~~ 228 (277)
T PRK13652 226 FLQ 228 (277)
T ss_pred hcC
Confidence 654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=304.44 Aligned_cols=206 Identities=23% Similarity=0.339 Sum_probs=154.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.... ...++.++|+||++....
T Consensus 54 ~~~l~~is~~i~~G-ei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig~v~q~~~~~~---- 127 (340)
T PRK13536 54 KAVVNGLSFTVASG-ECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIGVVPQFDNLDL---- 127 (340)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEEEEeCCccCCC----
Confidence 35788888888887 999999999999999999999999999999999999987643 467889999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
.. ++.+++.. ........ .....+..+.++.++...........+| +||||
T Consensus 128 -------------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~ll~~~~L~~~~~~~~~~LS--~G~kq 179 (340)
T PRK13536 128 -------------------EF------TVRENLLVFGRYFGMST-REIEAVIPSLLEFARLESKADARVSDLS--GGMKR 179 (340)
T ss_pred -------------------CC------cHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchhhCCChhhCC--HHHHH
Confidence 00 01111000 00000000 0000111122233344333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|||||||++||+.++..+++.|+++. +++|||++||+++++.. ||+|++|++|+++..|+++++
T Consensus 180 rv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l 259 (340)
T PRK13536 180 RLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHAL 259 (340)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998874 47999999999999988 999999999999999999887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 260 ~~~ 262 (340)
T PRK13536 260 IDE 262 (340)
T ss_pred Hhh
Confidence 643
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-35 Score=292.99 Aligned_cols=211 Identities=28% Similarity=0.398 Sum_probs=153.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 15 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~--- 90 (243)
T TIGR02315 15 KQALKNINLNINPG-EFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNL--- 90 (243)
T ss_pred cceeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcc---
Confidence 34799999999998 9999999999999999999999999999999999999876654 3467889999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchh-HH-HHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QR-FYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+. ..+...+-.............. .. ......+..+.++.++...........+| +
T Consensus 91 --------~~------------~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 148 (243)
T TIGR02315 91 --------IE------------RLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLS--G 148 (243)
T ss_pred --------cc------------cccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCC--H
Confidence 10 0000000000000000000000 00 00011122222333343333445556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998864 3 6899999999999977 9999999999999999
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
+++++
T Consensus 229 ~~~~~ 233 (243)
T TIGR02315 229 APSEL 233 (243)
T ss_pred CHHHh
Confidence 88775
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=286.35 Aligned_cols=190 Identities=24% Similarity=0.397 Sum_probs=145.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|++|++...+
T Consensus 14 ~~l~~v~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~----- 84 (205)
T cd03226 14 EILDDLSLDLYAG-EIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQL----- 84 (205)
T ss_pred ceeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhh-----
Confidence 4799999999998 9999999999999999999999999999999999998753 456778999999742110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ .. ++.+++...... .. ....+..+.++.++..+........+| +|||||+
T Consensus 85 ----~-------------~~------tv~e~l~~~~~~-~~---~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv 135 (205)
T cd03226 85 ----F-------------TD------SVREELLLGLKE-LD---AGNEQAETVLKDLDLYALKERHPLSLS--GGQKQRL 135 (205)
T ss_pred ----h-------------hc------cHHHHHhhhhhh-cC---ccHHHHHHHHHHcCCchhcCCCchhCC--HHHHHHH
Confidence 0 00 111111000000 00 000122233334444444555566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+|||||+.+|++|+|||||++||+.+.+.+.+.+++. .+++|+|++||+++.+.. ||++++|++|+++
T Consensus 136 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 136 AIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 9999999999999999999999999999999999887 457899999999999987 9999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-35 Score=290.16 Aligned_cols=205 Identities=26% Similarity=0.341 Sum_probs=154.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++.++|++|++...+
T Consensus 14 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~~q~~~~~~---- 87 (236)
T TIGR03864 14 RRALDDVSFTVRPG-EFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVVFQQPTLDL---- 87 (236)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEeCCCCCCcc----
Confidence 35799999999998 999999999999999999999999999999999999987665433 458999999732110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
..+. .+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 88 -------------------~~t~------~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 139 (236)
T TIGR03864 88 -------------------DLSV------RQNLRYHAALHGLSR-AEARERIAALLARLGLAERADDKVRELN--GGHRR 139 (236)
T ss_pred -------------------cCcH------HHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhcCChhhCC--HHHHH
Confidence 1111 1100000 0000000 0011112223334444444455556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|+++||||||++||+.+.+.+.+.++++. .++|+|++||+++.+..||++++|++|++++.++++++
T Consensus 140 rl~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (236)
T TIGR03864 140 RVEIARALLHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAEL 219 (236)
T ss_pred HHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999998875 37899999999999977999999999999999988777
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 220 ~~ 221 (236)
T TIGR03864 220 RG 221 (236)
T ss_pred HH
Confidence 54
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=294.88 Aligned_cols=208 Identities=23% Similarity=0.356 Sum_probs=158.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+.
T Consensus 23 ~~l~~isl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~---- 97 (269)
T PRK13648 23 FTLKDVSFNIPKG-QWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFV---- 97 (269)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheeEEEeChHHhcc----
Confidence 4799999999998 99999999999999999999999999999999999999887777888999999998532110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
..+...+-.. .. ........... .+..+.++.++..+........+| +|||||+
T Consensus 98 ------------------~~~v~~~~~~-~~--~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl 151 (269)
T PRK13648 98 ------------------GSIVKYDVAF-GL--ENHAVPYDEMH---RRVSEALKQVDMLERADYEPNALS--GGQKQRV 151 (269)
T ss_pred ------------------cccHHHHHHh-hH--HhcCCCHHHHH---HHHHHHHHHcCCchhhhCCcccCC--HHHHHHH
Confidence 0000000000 00 00000000111 111222334444444455566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+||||++.+|++|||||||++||+.+...+.+.+++..+ ++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 152 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 231 (269)
T PRK13648 152 AIAGVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231 (269)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhc
Confidence 999999999999999999999999999999999988643 689999999999987799999999999999999888765
Q ss_pred c
Q psy3001 437 N 437 (602)
Q Consensus 437 ~ 437 (602)
.
T Consensus 232 ~ 232 (269)
T PRK13648 232 H 232 (269)
T ss_pred C
Confidence 4
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-35 Score=287.96 Aligned_cols=204 Identities=24% Similarity=0.394 Sum_probs=152.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (222)
T cd03224 13 SQILFGVSLTVPEG-EIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGYVPEGRR------ 85 (222)
T ss_pred eeEeeeeeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEEeccccc------
Confidence 35799999999998 9999999999999999999999999999999999999887776554 567999999742
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++. ..+ +.+++... ...............++.+. ............+| +|||
T Consensus 86 -----~~~------------~~t------~~~~l~~~~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~~~~LS--~G~~ 138 (222)
T cd03224 86 -----IFP------------ELT------VEENLLLGAYARRRAKRKARLERVYELFP--RLKERRKQLAGTLS--GGEQ 138 (222)
T ss_pred -----cCC------------CCc------HHHHHHHHhhhcCchhHHHHHHHHHHHHH--hhhhhhhCchhhCC--HHHH
Confidence 110 001 11100000 00000000111111122111 11222344455677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|+|||||++||+.++..+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 139 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 218 (222)
T cd03224 139 QMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAE 218 (222)
T ss_pred HHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999998875 47899999999999887 99999999999999888776
Q ss_pred Hh
Q psy3001 434 LM 435 (602)
Q Consensus 434 l~ 435 (602)
+.
T Consensus 219 ~~ 220 (222)
T cd03224 219 LL 220 (222)
T ss_pred Hh
Confidence 54
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=290.64 Aligned_cols=204 Identities=24% Similarity=0.371 Sum_probs=154.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (232)
T cd03218 13 RKVVNGVSLSVKQG-EIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGYLPQEAS------ 85 (232)
T ss_pred EEeeccceeEecCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEEecCCcc------
Confidence 35799999999998 9999999999999999999999999999999999999877766553 467999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++... ......... .+..+.++.++...........+| +|
T Consensus 86 -----~~~------------~~t------v~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G 137 (232)
T cd03218 86 -----IFR------------KLT------VEENILAVLEIRGLSKKERE---EKLEELLEEFHITHLRKSKASSLS--GG 137 (232)
T ss_pred -----ccc------------cCc------HHHHHHHHHHhcCCCHHHHH---HHHHHHHHHcCChhhhhCChhhCC--HH
Confidence 110 001 11100000 000000011 111122233444444455566677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.+++.. .++|+|++||+++.+.. ||++++|++|+++..+++
T Consensus 138 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~ 217 (232)
T cd03218 138 ERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTP 217 (232)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCH
Confidence 9999999999999999999999999999999999999998865 47899999999998887 999999999999998888
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 218 ~~~~~ 222 (232)
T cd03218 218 EEIAA 222 (232)
T ss_pred HHhhc
Confidence 77643
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=291.27 Aligned_cols=206 Identities=22% Similarity=0.318 Sum_probs=155.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|+||++.
T Consensus 15 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 92 (247)
T TIGR00972 15 EALKNINLDIPKN-QVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPN- 92 (247)
T ss_pred eeecceeEEECCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHHHhheEEEecCcc-
Confidence 4799999999998 999999999999999999999999998 99999999988753 34567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. . ++.+++... .............+..+.++.++.. ........
T Consensus 93 ----------~~~-------------~------tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 143 (247)
T TIGR00972 93 ----------PFP-------------M------SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSAL 143 (247)
T ss_pred ----------cCC-------------C------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcc
Confidence 110 0 010100000 0000000000111122223333333 23344556
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 144 ~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i 221 (247)
T TIGR00972 144 GLS--GGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGEL 221 (247)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999987666899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 222 ~~~~~~~~~~~~ 233 (247)
T TIGR00972 222 VEYGPTEQIFTN 233 (247)
T ss_pred EEeCCHHHHHhC
Confidence 999998887654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=302.69 Aligned_cols=220 Identities=24% Similarity=0.285 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC----CCCceEEECCeecCCCChHHHh----hccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE----PADGTIIIDGVDIRTLGLHTLR----SRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~----~~~G~I~i~g~~~~~~~~~~~~----~~i~~v~Q~~ 269 (602)
...++||||++.+| |+++|+|+||||||||+++|+|+.+ |++|+|.++|+++..++...++ +.++||+|++
T Consensus 20 ~~~l~~vsl~i~~G-e~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~ 98 (330)
T PRK15093 20 VKAVDRVSMTLTEG-EIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEP 98 (330)
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHHHHHhCCCEEEEecCc
Confidence 35899999999998 9999999999999999999999997 5899999999999888776543 4799999985
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccch--hHHHHHHHHHHHHHHhhcccCC---ccccc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN--LQRFYVATSRQLKRLESVSRSP---IYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~~~---~~~~~ 344 (602)
...+. |.. ...+.+...+....... .........+..+.++.+++.+ .....
T Consensus 99 ~~~l~-----p~~------------------tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~ 155 (330)
T PRK15093 99 QSCLD-----PSE------------------RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSF 155 (330)
T ss_pred chhcC-----ccc------------------cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCC
Confidence 42110 000 00000000000000000 0000011122334444555432 23556
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
...|| |||||||+|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|+
T Consensus 156 p~~LS--gG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~ 233 (330)
T PRK15093 156 PYELT--EGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLY 233 (330)
T ss_pred chhCC--HHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEE
Confidence 67788 6999999999999999999999999999999999999999998754 7899999999999987 99999999
Q ss_pred CceEEeecChhHHhhcchhHHH
Q psy3001 422 KGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+|+|++.|+.++++.++...|.
T Consensus 234 ~G~ive~g~~~~i~~~p~~~y~ 255 (330)
T PRK15093 234 CGQTVETAPSKELVTTPHHPYT 255 (330)
T ss_pred CCEEEEECCHHHHHhCCCCHHH
Confidence 9999999999998776544443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-35 Score=288.50 Aligned_cols=195 Identities=26% Similarity=0.384 Sum_probs=146.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 17 ~~il~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--- 92 (218)
T cd03255 17 VQALKGVSLSIEKG-EFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFN--- 92 (218)
T ss_pred eeEEeeeEEEEcCC-CEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccc---
Confidence 45899999999998 999999999999999999999999999999999999988766432 4568999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 93 --------~~~------------~~t------v~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 143 (218)
T cd03255 93 --------LLP------------DLT------ALENVELPLLLAGVPK-KERRERAEELLERVGLGDRLNHYPSELS--G 143 (218)
T ss_pred --------cCC------------CCc------HHHHHHHHHhhcCCCH-HHHHHHHHHHHHHcCCchhhhcChhhcC--H
Confidence 110 001 111100000 000000 0011122233334444444455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 144 G~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 144 GQQQRVAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999999999999999999998754 7899999999998867999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=293.95 Aligned_cols=207 Identities=21% Similarity=0.331 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 20 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~---- 94 (269)
T PRK11831 20 RCIFDNISLTVPRG-KITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRKRMSMLFQSGA---- 94 (269)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhhcEEEEecccc----
Confidence 45799999999998 99999999999999999999999999999999999998766543 35678999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| |
T Consensus 95 -------~~~------------~~------tv~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--g 146 (269)
T PRK11831 95 -------LFT------------DM------NVFDNVAYPLREHTQLPA-PLLHSTVMMKLEAVGLRGAAKLMPSELS--G 146 (269)
T ss_pred -------cCC------------CC------CHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0001112222334444444444556677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 147 GMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999988643 6899999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++.+.
T Consensus 227 ~~~~~~~~ 234 (269)
T PRK11831 227 SAQALQAN 234 (269)
T ss_pred CHHHHhcC
Confidence 98887654
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-35 Score=290.03 Aligned_cols=212 Identities=47% Similarity=0.733 Sum_probs=159.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 35 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~--------- 104 (257)
T cd03288 35 PVLKHVKAYIKPG-QKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDP--------- 104 (257)
T ss_pred cceeEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCC---------
Confidence 4688888888887 999999999999999999999999999999999999998888888899999999974
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH-HHH-HHHhhc--ccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS-RQL-KRLESV--SRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~l~~~--~~~~~~~~~~~~lsgs~Gq 354 (602)
.++ ..++..+-.... .. .......... ..+ +.+... +........+..+| +||
T Consensus 105 --~l~-------------~~tv~~nl~~~~-----~~-~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS--~G~ 161 (257)
T cd03288 105 --ILF-------------SGSIRFNLDPEC-----KC-TDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFS--VGQ 161 (257)
T ss_pred --ccc-------------ccHHHHhcCcCC-----CC-CHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCC--HHH
Confidence 222 111111100000 00 0000000000 001 111111 22333444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|||++|||||+++|++|||||||++||+.++..+.+.++...++.|+|++||+++.+..||++++|++|++++.|+++++
T Consensus 162 ~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~ 241 (257)
T cd03288 162 RQLFCLARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENL 241 (257)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999887678999999999999988999999999999999998888
Q ss_pred hhcchhHHH
Q psy3001 435 MKNKASIFY 443 (602)
Q Consensus 435 ~~~~~~~~~ 443 (602)
.......+.
T Consensus 242 ~~~~~~~~~ 250 (257)
T cd03288 242 LAQEDGVFA 250 (257)
T ss_pred HhccchHHH
Confidence 765444333
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=300.71 Aligned_cols=203 Identities=25% Similarity=0.347 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|+||++..
T Consensus 17 ~~~l~~vsl~i~~G-e~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~v~q~~~~------ 88 (303)
T TIGR01288 17 KVVVNDLSFTIARG-ECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGVVPQFDNL------ 88 (303)
T ss_pred eEEEcceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEEEeccccC------
Confidence 35799999999998 99999999999999999999999999999999999988653 35668899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-c--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-P--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+. .. ++.+++.. . .......... +..+.++.++...........+| |||
T Consensus 89 -----~~------------~~------tv~e~l~~~~~~~~~~~~~~~~---~~~~ll~~~~l~~~~~~~~~~LS--gG~ 140 (303)
T TIGR01288 89 -----DP------------EF------TVRENLLVFGRYFGMSTREIEA---VIPSLLEFARLESKADVRVALLS--GGM 140 (303)
T ss_pred -----Cc------------CC------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHCCChhHhcCchhhCC--HHH
Confidence 10 00 11111000 0 0000000011 11122233344333444555677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|||++||+++.+.. ||++++|++|+++..|+++
T Consensus 141 ~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 220 (303)
T TIGR01288 141 KRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPH 220 (303)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998874 47899999999999987 9999999999999999988
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 221 ~~~~ 224 (303)
T TIGR01288 221 ALID 224 (303)
T ss_pred HHHh
Confidence 8754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-35 Score=299.34 Aligned_cols=205 Identities=22% Similarity=0.314 Sum_probs=158.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|+||++.
T Consensus 15 ~~~l~~is~~i~~G-ei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~~q~~~------- 85 (301)
T TIGR03522 15 QNALDEVSFEAQKG-RIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYLPEHNP------- 85 (301)
T ss_pred EEEEEEeEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEecCCCC-------
Confidence 45899999999998 9999999999999999999999999999999999999876 34567889999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. . .++.+++.. ....... ......+..+.++.++..+........+| +||||
T Consensus 86 ----l~~------------~------~tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 140 (301)
T TIGR03522 86 ----LYL------------D------MYVREYLQFIAGIYGMK-GQLLKQRVEEMIELVGLRPEQHKKIGQLS--KGYRQ 140 (301)
T ss_pred ----CCC------------C------CcHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchHhcCchhhCC--HHHHH
Confidence 110 0 011111000 0000000 00011122233334455554555566777 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|++|||||+++|++|+|||||++||+.+.+++++.++++.+++|||++||+++++.. ||||++|++|+++..|+++++.
T Consensus 141 rv~la~al~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 141 RVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988778999999999999988 9999999999999999988875
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
+
T Consensus 221 ~ 221 (301)
T TIGR03522 221 A 221 (301)
T ss_pred H
Confidence 4
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-35 Score=297.24 Aligned_cols=204 Identities=27% Similarity=0.398 Sum_probs=158.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++||||++.+| +++|++||||||||||+|+|+|++.|++|+|.++|.+...- ...+++++||+||++.
T Consensus 18 ~~~l~~vs~~i~~G-ei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~------- 88 (293)
T COG1131 18 KTALDGVSFEVEPG-EIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPS------- 88 (293)
T ss_pred CEEEeceeEEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCC-------
Confidence 57899999999998 99999999999999999999999999999999999988765 7788999999999743
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ ..+ ++.+++. ....+... .....+..+.++.+++..........+| +|||
T Consensus 89 ----~~--------------~~l----T~~e~l~--~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS--~G~k 142 (293)
T COG1131 89 ----LY--------------PEL----TVRENLE--FFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLS--GGMK 142 (293)
T ss_pred ----CC--------------ccc----cHHHHHH--HHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcC--HHHH
Confidence 11 000 1111100 00000000 0111222333444554442233345566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-c-cEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-H-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++||+||+++|++|||||||++|||.++..+.+.|+++.+ + +||+++||.++++.. ||+|++|++|+++..|+++
T Consensus 143 qrl~ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~ 222 (293)
T COG1131 143 QRLSIALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPE 222 (293)
T ss_pred HHHHHHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHH
Confidence 999999999999999999999999999999999999999764 5 799999999999998 9999999999999999888
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 223 ~l~~ 226 (293)
T COG1131 223 ELKE 226 (293)
T ss_pred HHHH
Confidence 8654
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-35 Score=285.86 Aligned_cols=197 Identities=25% Similarity=0.319 Sum_probs=147.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| +++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~g--~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~------- 82 (211)
T cd03264 13 KRALDGVSLTLGPG--MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYLPQEFG------- 82 (211)
T ss_pred EEEEcceeEEEcCC--cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEecCCCc-------
Confidence 35899999999985 99999999999999999999999999999999999887665 677889999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++.. .++.+++... ....... .....+..+.++.++..+........+| +||||
T Consensus 83 ----~~~~------------------~tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 137 (211)
T cd03264 83 ----VYPN------------------FTVREFLDYIAWLKGIPS-KEVKARVDEVLELVNLGDRAKKKIGSLS--GGMRR 137 (211)
T ss_pred ----cccc------------------CCHHHHHHHHHHHhCCCH-HHHHHHHHHHHHHCCCHHHHhCchhhCC--HHHHH
Confidence 1100 0111110000 0000000 0001111122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|+++||||||++||+.+.+++.+.+++..++.|+|++||+++.+.. ||++++|++|++++.|
T Consensus 138 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 138 RVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999988667999999999999987 9999999999998653
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=296.95 Aligned_cols=207 Identities=26% Similarity=0.389 Sum_probs=156.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++...+
T Consensus 21 ~~l~~vsl~i~~G-e~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~- 98 (287)
T PRK13641 21 KGLDNISFELEEG-SFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQL- 98 (287)
T ss_pred cceeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHHHHhceEEEEeChhhhh-
Confidence 4799999999998 99999999999999999999999999999999999988643 24566788999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
+ . .++.+++... ....... .....+..+.++.++.. .........+| +
T Consensus 99 --------~-------------~------~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~~LS--g 148 (287)
T PRK13641 99 --------F-------------E------NTVLKDVEFGPKNFGFSE-DEAKEKALKWLKKVGLSEDLISKSPFELS--G 148 (287)
T ss_pred --------c-------------c------chHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCChhHhhCCcccCC--H
Confidence 1 0 0111110000 0000000 00111122233344443 34455566777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||++++|++|++++.|+
T Consensus 149 Gq~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~ 228 (287)
T PRK13641 149 GQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHAS 228 (287)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998874 47899999999999987 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 229 ~~~~~~~ 235 (287)
T PRK13641 229 PKEIFSD 235 (287)
T ss_pred HHHHhcC
Confidence 8887653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-35 Score=294.02 Aligned_cols=208 Identities=25% Similarity=0.375 Sum_probs=158.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 22 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~---- 96 (271)
T PRK13632 22 NNALKNVSFEINEG-EYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQF---- 96 (271)
T ss_pred ccceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceEEEEeCHHHhc----
Confidence 35799999999998 9999999999999999999999999999999999999987777788899999999842111
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ .. ++.+++.... ...... .....+..+.++.++..+........+| +||||
T Consensus 97 -----~-------------~~------tv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 149 (271)
T PRK13632 97 -----I-------------GA------TVEDDIAFGLENKKVPP-KKMKDIIDDLAKKVGMEDYLDKEPQNLS--GGQKQ 149 (271)
T ss_pred -----C-------------cc------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCHHHhhCCcccCC--HHHHH
Confidence 0 00 1111100000 000000 0011112222334444444555566777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|++||+++.+..||++++|++|++++.++.+++
T Consensus 150 rl~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 229 (271)
T PRK13632 150 RVAIASVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHH
Confidence 99999999999999999999999999999999999988643 4899999999999866999999999999999988877
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 230 ~~~ 232 (271)
T PRK13632 230 LNN 232 (271)
T ss_pred hcC
Confidence 553
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-35 Score=287.82 Aligned_cols=200 Identities=24% Similarity=0.324 Sum_probs=151.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---H-hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---L-RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~-~~~i~~v~Q~~~~~~ 273 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++...+... + ++.++|++|++.
T Consensus 22 ~~il~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--- 97 (233)
T PRK11629 22 TDVLHNVSFSIGEG-EMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHH--- 97 (233)
T ss_pred eeeEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcc---
Confidence 35899999999998 999999999999999999999999999999999999998876643 3 367999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++...........+| +
T Consensus 98 --------~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--g 148 (233)
T PRK11629 98 --------LLP------------DF------TALENVAMPLLIGKKKP-AEINSRALEMLAAVGLEHRANHRPSELS--G 148 (233)
T ss_pred --------cCC------------CC------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0111122233344455444455566677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+..+|++++|++|++++.++
T Consensus 149 G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 149 GERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998864 3789999999999998888999999999987664
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=295.29 Aligned_cols=208 Identities=22% Similarity=0.337 Sum_probs=154.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. ......+++.++|++|++...+
T Consensus 15 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~--- 90 (271)
T PRK13638 15 PVLKGLNLDFSLS-PVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQI--- 90 (271)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheEEEeeChhhcc---
Confidence 4799999999998 999999999999999999999999999999999999884 2334567889999999743111
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ ..+.. +.+.... ............ +..+.++.++...........+| |||||
T Consensus 91 ------~-------------~~~~~--~~l~~~~-~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 143 (271)
T PRK13638 91 ------F-------------YTDID--SDIAFSL-RNLGVPEAEITR---RVDEALTLVDAQHFRHQPIQCLS--HGQKK 143 (271)
T ss_pred ------c-------------cccHH--HHHHHHH-HHcCCCHHHHHH---HHHHHHHHcCCHhHhcCCchhCC--HHHHH
Confidence 0 00000 0000000 000000001111 11122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 144 rl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 223 (271)
T PRK13638 144 RVAIAGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEV 223 (271)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998864 47899999999999977 999999999999999998887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 224 ~~~ 226 (271)
T PRK13638 224 FAC 226 (271)
T ss_pred hcC
Confidence 654
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=286.43 Aligned_cols=196 Identities=25% Similarity=0.370 Sum_probs=146.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hh-hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... ++ +.++|++|++.
T Consensus 18 ~~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~--- 93 (221)
T TIGR02211 18 TRVLKGVSLSIGKG-EIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHH--- 93 (221)
T ss_pred eEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHHHhcEEEEecccc---
Confidence 35899999999998 999999999999999999999999999999999999988776544 23 67999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| +
T Consensus 94 --------~~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~ 144 (221)
T TIGR02211 94 --------LLP------------DF------TALENVAMPLLIGKKSV-KEAKERAYEMLEKVGLEHRINHRPSELS--G 144 (221)
T ss_pred --------cCC------------CC------cHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--H
Confidence 110 00 1111100000 000000 0011112223334444444455556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+..+|++++|++|+++
T Consensus 145 G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 145 GERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999999999999998874 368999999999998779999999999975
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=289.48 Aligned_cols=210 Identities=24% Similarity=0.333 Sum_probs=157.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+...+++.++|++|++...
T Consensus 16 ~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~ 94 (250)
T PRK14247 16 VEVLDGVNLEIPDN-TITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPI 94 (250)
T ss_pred eeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHhccEEEEeccCccC
Confidence 34799999999998 99999999999999999999999974 6999999999998877778889999999974211
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCCcC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGETV 348 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l 348 (602)
+ ..+...+-..... ............ .+..+.++.++.. .........+
T Consensus 95 ~-----------------------~~tv~enl~~~~~-~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~~L 147 (250)
T PRK14247 95 P-----------------------NLSIFENVALGLK-LNRLVKSKKELQ---ERVRWALEKAQLWDEVKDRLDAPAGKL 147 (250)
T ss_pred C-----------------------CCcHHHHHHHHHH-hccccCCHHHHH---HHHHHHHHHcCCCcchhhhhcCCcccC
Confidence 0 1111100000000 000000001111 1112222233322 1233445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| +|||||++|||||+.+|++|+|||||++||+.++.++.+.+++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 148 S--gG~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 225 (250)
T PRK14247 148 S--GGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVE 225 (250)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEE
Confidence 7 69999999999999999999999999999999999999999987667999999999999876 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|+++++...
T Consensus 226 ~g~~~~~~~~ 235 (250)
T PRK14247 226 WGPTREVFTN 235 (250)
T ss_pred ECCHHHHHcC
Confidence 9999887654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=292.58 Aligned_cols=209 Identities=28% Similarity=0.397 Sum_probs=157.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.++|++|++...+
T Consensus 24 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~- 101 (265)
T TIGR02769 24 APVLTNVSLSIEEG-ETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAV- 101 (265)
T ss_pred eEEeeCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHHHHHHhhceEEEecChhhhc-
Confidence 45899999999998 999999999999999999999999999999999999988766543 5778999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
+ . .. ++.+++.... ...... .....+..+.++.++.. .........+|
T Consensus 102 --------~-~-----------~~------tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~LS-- 152 (265)
T TIGR02769 102 --------N-P-----------RM------TVRQIIGEPLRHLTSLDE-SEQKARIAELLDMVGLRSEDADKLPRQLS-- 152 (265)
T ss_pred --------C-C-----------CC------CHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCChhhhhCChhhCC--
Confidence 0 0 00 0111000000 000000 00111122233344442 23444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 153 gGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 232 (265)
T TIGR02769 153 GGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232 (265)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEE
Confidence 6999999999999999999999999999999999999999988643 7899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 233 g~~~~~~~~ 241 (265)
T TIGR02769 233 CDVAQLLSF 241 (265)
T ss_pred CCHHHHcCC
Confidence 999998764
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=268.95 Aligned_cols=206 Identities=24% Similarity=0.383 Sum_probs=161.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...+++|||+..+| |+++|+|+||+|||||+|+|+|+.+|.+|+|.++|.|+...+++.. +..|+||||...
T Consensus 16 ~~~L~gvsl~v~~G-eiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~------ 88 (237)
T COG0410 16 IQALRGVSLEVERG-EIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRR------ 88 (237)
T ss_pred eeEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCccccc------
Confidence 45799999999998 9999999999999999999999999999999999999999988764 678999999632
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccc---cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT---PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|. .-+...|-.+-..... ......+..+...++..++ ....+.++| ||
T Consensus 89 -----iF~------------~LTVeENL~~g~~~~~~~~~~~~~~e~v~~lFP~Lker---------~~~~aG~LS--GG 140 (237)
T COG0410 89 -----IFP------------RLTVEENLLLGAYARRDKEAQERDLEEVYELFPRLKER---------RNQRAGTLS--GG 140 (237)
T ss_pred -----chh------------hCcHHHHHhhhhhcccccccccccHHHHHHHChhHHHH---------hcCcccCCC--hH
Confidence 110 1111111111000000 0000123334444443333 345566777 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||.+||||||+.+|++|+|||||.+|-|.-.+.|.+.++++.+ +.||++|.++...... +||.++|++|+|+..|+
T Consensus 141 EQQMLAiaRALm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 141 EQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999999999864 5799999999999988 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
.+++..++
T Consensus 221 ~~eL~~~~ 228 (237)
T COG0410 221 AAELLADP 228 (237)
T ss_pred HHHHhcCH
Confidence 99998763
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-35 Score=285.11 Aligned_cols=196 Identities=20% Similarity=0.327 Sum_probs=146.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|++|++..
T Consensus 14 ~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~~q~~~~------- 83 (213)
T cd03301 14 TALDDLNLDIADG-EFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMVFQNYAL------- 83 (213)
T ss_pred eeeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEEecChhh-------
Confidence 4799999999998 99999999999999999999999999999999999998765432 4689999997421
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. .. ++.+++... ....... .....+..+.+..++...........+| +|||||
T Consensus 84 ----~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 138 (213)
T cd03301 84 ----YP------------HM------TVYDNIAFGLKLRKVPK-DEIDERVREVAELLQIEHLLDRKPKQLS--GGQRQR 138 (213)
T ss_pred ----cc------------CC------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHHHHhCChhhCC--HHHHHH
Confidence 10 00 111110000 0000000 0001111222233333333455556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
++|||||+.+|++++|||||++||+.+...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 139 ~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 139 VALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999999999988643 7899999999999887 9999999999998765
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=294.28 Aligned_cols=205 Identities=24% Similarity=0.336 Sum_probs=158.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..++
T Consensus 21 ~~l~~v~l~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~----- 94 (277)
T PRK13642 21 NQLNGVSFSITKG-EWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKIGMVFQNPDNQF----- 94 (277)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcceEEEEECHHHhh-----
Confidence 4799999999998 9999999999999999999999999999999999999987777788899999999853111
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+ .. ++.+++... . ........ .+....++.++...........+| +|||
T Consensus 95 ----~-------------~~------tv~eni~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G~~ 146 (277)
T PRK13642 95 ----V-------------GA------TVEDDVAFGMENQGIPREEMI---KRVDEALLAVNMLDFKTREPARLS--GGQK 146 (277)
T ss_pred ----c-------------cC------CHHHHHHhhHHHcCCCHHHHH---HHHHHHHHHCCCHhHhhCCcccCC--HHHH
Confidence 0 00 111110000 0 00000111 111222223333334445556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+..||++++|++|++++.|++++
T Consensus 147 qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 226 (277)
T PRK13642 147 QRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSE 226 (277)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 999999999999999999999999999999999999988753 789999999999987799999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 227 ~~~~ 230 (277)
T PRK13642 227 LFAT 230 (277)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-35 Score=293.52 Aligned_cols=205 Identities=25% Similarity=0.430 Sum_probs=157.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-hHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++..++
T Consensus 16 ~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~---- 90 (274)
T PRK13644 16 PALENINLVIKKG-EYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQF---- 90 (274)
T ss_pred ceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEEEEEChhhhc----
Confidence 3799999999998 999999999999999999999999999999999999987765 3567889999999853211
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... .......... +..+.++.++...........+| +||
T Consensus 91 -----~-------------~~------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~gl~~~~~~~~~~LS--~G~ 141 (274)
T PRK13644 91 -----V-------------GR------TVEEDLAFGPENLCLPPIEIRK---RVDRALAEIGLEKYRHRSPKTLS--GGQ 141 (274)
T ss_pred -----c-------------cc------hHHHHHHhhHHHcCCCHHHHHH---HHHHHHHHCCCHHHhcCCcccCC--HHH
Confidence 1 00 111110000 0000001111 11222233444344455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++++. ++.|+|++||+++.+..||++++|++|++++.|++++
T Consensus 142 ~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 221 (274)
T PRK13644 142 GQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPEN 221 (274)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHH
Confidence 999999999999999999999999999999999999998864 4799999999999986699999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 222 ~~~~ 225 (274)
T PRK13644 222 VLSD 225 (274)
T ss_pred HhcC
Confidence 7654
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-35 Score=290.08 Aligned_cols=207 Identities=25% Similarity=0.390 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--------hHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--------LHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--------~~~~~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~ 94 (250)
T PRK11264 16 QTVLHGIDLEVKPG-EVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNF 94 (250)
T ss_pred eeeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHHHhhhhEEEEecCc
Confidence 35799999999998 999999999999999999999999999999999999886532 345678899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
. ++. ..+ +.+++... . ...... .....+..+.++.++...........
T Consensus 95 ~-----------~~~------------~~t------v~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~ 144 (250)
T PRK11264 95 N-----------LFP------------HRT------VLENIIEGPVIVKGEPK-EEATARARELLAKVGLAGKETSYPRR 144 (250)
T ss_pred c-----------cCC------------CCC------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCcchhhCChhh
Confidence 2 110 001 11110000 0 000000 00111122223344444434455667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+| +|||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 145 LS--~Gq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i 222 (250)
T PRK11264 145 LS--GGQQQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRI 222 (250)
T ss_pred CC--hHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 77 699999999999999999999999999999999999999998865 47899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 223 ~~~~~~~~~~~~ 234 (250)
T PRK11264 223 VEQGPAKALFAD 234 (250)
T ss_pred EEeCCHHHHhcC
Confidence 999998887654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-35 Score=286.56 Aligned_cols=197 Identities=23% Similarity=0.313 Sum_probs=148.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++.
T Consensus 19 ~il~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~-------- 88 (218)
T cd03266 19 QAVDGVSFTVKPG-EVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTG-------- 88 (218)
T ss_pred eeecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcc--------
Confidence 5899999999998 9999999999999999999999999999999999998875 34567889999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. ..+ +.+++... ...... ......+..+.++.++...........+| +|||||
T Consensus 89 ---~~~------------~~t------v~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 144 (218)
T cd03266 89 ---LYD------------RLT------ARENLEYFAGLYGLK-GDELTARLEELADRLGMEELLDRRVGGFS--TGMRQK 144 (218)
T ss_pred ---cCc------------CCC------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCHHHHhhhhhhcC--HHHHHH
Confidence 110 001 11110000 000000 00011122223333444444455556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
++|||||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 145 VAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHHHHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 999999999999999999999999999999999998874 47899999999999887 9999999999997643
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-35 Score=290.39 Aligned_cols=204 Identities=25% Similarity=0.350 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 15 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 89 (258)
T PRK13548 15 RTLLDDVSLTLRPG-EVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAVLPQHSSLSF---- 89 (258)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEEEccCCcCCC----
Confidence 45799999999998 9999999999999999999999999999999999999887777777889999999742111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
..+ +.+++... .......... +..+.++.++...........+| +||
T Consensus 90 -------------------~~t------v~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gGe 139 (258)
T PRK13548 90 -------------------PFT------VEEVVAMGRAPHGLSRAEDDA---LVAAALAQVDLAHLAGRDYPQLS--GGE 139 (258)
T ss_pred -------------------CCC------HHHHHHhhhcccCCCcHHHHH---HHHHHHHHcCCHhHhcCCcccCC--HHH
Confidence 001 11110000 0000000011 11122223333333444556677 699
Q ss_pred HHHHHHHHHHh------hCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALL------RKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+ .+|++|+|||||++||+.+...+.+.|+++. .+.|||++||+++.+.. ||++++|++|++
T Consensus 140 ~qrv~la~al~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i 219 (258)
T PRK13548 140 QQRVQLARVLAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRL 219 (258)
T ss_pred HHHHHHHHHHhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEE
Confidence 99999999999 5999999999999999999999999998865 47899999999999987 999999999999
Q ss_pred EeecChhHHhh
Q psy3001 426 VEFDSPSVLMK 436 (602)
Q Consensus 426 ~~~g~~~~l~~ 436 (602)
++.++++++..
T Consensus 220 ~~~~~~~~~~~ 230 (258)
T PRK13548 220 VADGTPAEVLT 230 (258)
T ss_pred EeeCCHHHHhC
Confidence 99888777643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=287.78 Aligned_cols=207 Identities=23% Similarity=0.360 Sum_probs=156.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++..
T Consensus 14 ~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~---- 88 (240)
T PRK09493 14 TQVLHNIDLNIDQG-EVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAGMVFQQFYL---- 88 (240)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceEEEeccccc----
Confidence 34799999999998 999999999999999999999999999999999999987643 34667899999997321
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. .. ++.+++.... ...... .....+..+.++.++..+........+| +|
T Consensus 89 -------~~------------~~------tv~~~l~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G 140 (240)
T PRK09493 89 -------FP------------HL------TALENVMFGPLRVRGASK-EEAEKQARELLAKVGLAERAHHYPSELS--GG 140 (240)
T ss_pred -------CC------------CC------cHHHHHHhHHHHhcCCCH-HHHHHHHHHHHHHcCChHHHhcChhhcC--HH
Confidence 10 00 0111100000 000000 0011112223334444444445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++++|||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 141 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 220 (240)
T PRK09493 141 QQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDP 220 (240)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCH
Confidence 9999999999999999999999999999999999999998864 47999999999999987 999999999999999988
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
.++.+.
T Consensus 221 ~~~~~~ 226 (240)
T PRK09493 221 QVLIKN 226 (240)
T ss_pred HHHhcC
Confidence 877654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=293.84 Aligned_cols=207 Identities=23% Similarity=0.322 Sum_probs=159.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC---ceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD---GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~---G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++ |+|.++|.++...+...+++.++|++|++..++
T Consensus 21 ~~l~~v~l~i~~G-e~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~-- 97 (282)
T PRK13640 21 PALNDISFSIPRG-SWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQF-- 97 (282)
T ss_pred cceeeEEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHHhheEEEEECHHHhh--
Confidence 4799999999998 9999999999999999999999999987 899999999987777778889999999853211
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ .. ++.+++... ...... ......+..+.++.++..+........+| +||
T Consensus 98 -------~-------------~~------tv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--~G~ 148 (282)
T PRK13640 98 -------V-------------GA------TVGDDVAFGLENRAVP-RPEMIKIVRDVLADVGMLDYIDSEPANLS--GGQ 148 (282)
T ss_pred -------c-------------cC------CHHHHHHhhHHhCCCC-HHHHHHHHHHHHHHCCChhHhcCCcccCC--HHH
Confidence 0 00 111110000 000000 00011122233334454455556667788 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
+||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|||++||+++.+..||++++|++|++++.|+++
T Consensus 149 ~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~ 228 (282)
T PRK13640 149 KQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPV 228 (282)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 9999999999999999999999999999999999999988753 78999999999998669999999999999999988
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
+++..
T Consensus 229 ~~~~~ 233 (282)
T PRK13640 229 EIFSK 233 (282)
T ss_pred HHhcC
Confidence 87654
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=287.00 Aligned_cols=207 Identities=20% Similarity=0.328 Sum_probs=156.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++...+...+++.++|++|++.
T Consensus 15 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~---- 89 (246)
T PRK14269 15 KQALFDINMQIEQN-KITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPN---- 89 (246)
T ss_pred EeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCc----
Confidence 35799999999998 9999999999999999999999984 699999999999988777788889999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchh-HHHHHHHHHHHHHHhhcccC----CcccccCCcC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNL-QRFYVATSRQLKRLESVSRS----PIYSHFGETV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~l 348 (602)
++. . ++.+++... ..... ........+..+.++.++.. .........+
T Consensus 90 -------l~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 143 (246)
T PRK14269 90 -------VFV-------------K------SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALAL 143 (246)
T ss_pred -------ccc-------------c------cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccC
Confidence 210 0 111110000 00000 00000011111222233332 1233445566
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
| +|||||++|||||+++|++++|||||++||+.+...+.+.+++..+++|+|++||+++.+.. ||++++|++|++++
T Consensus 144 S--~G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~ 221 (246)
T PRK14269 144 S--GGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIE 221 (246)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEE
Confidence 7 69999999999999999999999999999999999999999887668999999999999987 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++++..
T Consensus 222 ~g~~~~~~~~ 231 (246)
T PRK14269 222 FGESKEFFEN 231 (246)
T ss_pred ECCHHHHHhC
Confidence 9998887654
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=285.95 Aligned_cols=206 Identities=32% Similarity=0.474 Sum_probs=156.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 16 ~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--------- 85 (234)
T cd03251 16 PVLRDISLDIPAG-ETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDV--------- 85 (234)
T ss_pred cceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCC---------
Confidence 4799999999998 999999999999999999999999999999999999988777778888999999973
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
.++ ..+. .+++..... ........... ...+.++.+ +...........+| +|
T Consensus 86 --~~~-------------~~tv------~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS--~G 142 (234)
T cd03251 86 --FLF-------------NDTV------AENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLS--GG 142 (234)
T ss_pred --eec-------------cccH------HHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCC--HH
Confidence 222 1111 111000000 00001100000 001111111 22223344456677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+.+|+++||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.+++++
T Consensus 143 ~~qrv~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~ 222 (234)
T cd03251 143 QRQRIAIARALLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEE 222 (234)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHH
Confidence 99999999999999999999999999999999999999998877899999999999997799999999999999998877
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 223 ~~~~ 226 (234)
T cd03251 223 LLAQ 226 (234)
T ss_pred HHHc
Confidence 7544
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-35 Score=286.08 Aligned_cols=196 Identities=27% Similarity=0.345 Sum_probs=146.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. +++.++|++|++.
T Consensus 17 ~~il~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i~~v~q~~~------- 83 (220)
T cd03293 17 VTALEDISLSVEEG-EFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDRGYVFQQDA------- 83 (220)
T ss_pred eEEEeceeEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcEEEEecccc-------
Confidence 45899999999998 9999999999999999999999999999999999998763 3578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ....... .....+..+.++.++...........+| +||||
T Consensus 84 ----~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~q 138 (220)
T cd03293 84 ----LLP------------WL------TVLDNVALGLELQGVPK-AEARERAEELLELVGLSGFENAYPHQLS--GGMRQ 138 (220)
T ss_pred ----ccc------------CC------CHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCCcccCC--HHHHH
Confidence 110 00 111110000 0000000 0011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEEeecCh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVVEFDSP 431 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~~~g~~ 431 (602)
|++|||||+.+|+++||||||++||+.+...+.+.+++.. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 139 rl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 139 RVALARALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999999999999999998863 36899999999999877 99999999 7999887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-35 Score=284.52 Aligned_cols=195 Identities=26% Similarity=0.309 Sum_probs=147.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++..
T Consensus 15 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~--- 90 (222)
T PRK10908 15 RQALQGVTFHMRPG-EMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQDHHL--- 90 (222)
T ss_pred CeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhheEEEecCccc---
Confidence 34799999999998 99999999999999999999999999999999999998776543 367899999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
++ .. ++.+++... .......... +..+.++.++..+........+|
T Consensus 91 --------~~------------~~------tv~~~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS-- 139 (222)
T PRK10908 91 --------LM------------DR------TVYDNVAIPLIIAGASGDDIRR---RVSAALDKVGLLDKAKNFPIQLS-- 139 (222)
T ss_pred --------cc------------cc------cHHHHHHhHHHhcCCCHHHHHH---HHHHHHHHcCChhhhhCCchhCC--
Confidence 10 00 111110000 0000001111 11122233333333444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++||||++.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++++.. ||++++|++|+++.
T Consensus 140 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 140 GGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 699999999999999999999999999999999999999998874 46899999999999988 99999999999864
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=288.90 Aligned_cols=211 Identities=22% Similarity=0.311 Sum_probs=155.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee-----cCCCChHH----Hhhccceeccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD-----IRTLGLHT----LRSRLTIIPQV 268 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~-----~~~~~~~~----~~~~i~~v~Q~ 268 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+... .++.++|++|+
T Consensus 19 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~ 97 (258)
T PRK11701 19 RKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQH 97 (258)
T ss_pred ceeeeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHHHHhhcceEEEeeC
Confidence 35799999999998 9999999999999999999999999999999999998 76665544 35579999998
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCc
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGET 347 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 347 (602)
+...+ + . ..+ ..+++............... ..+..+.++.++.. .........
T Consensus 98 ~~~~~---------~-~-----------~~~--~~~~i~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~ 151 (258)
T PRK11701 98 PRDGL---------R-M-----------QVS--AGGNIGERLMAVGARHYGDI---RATAGDWLERVEIDAARIDDLPTT 151 (258)
T ss_pred ccccc---------C-c-----------ccc--HHHHHHHHHHHhccCcHHHH---HHHHHHHHHHcCCChhHHhCCCcc
Confidence 42100 0 0 000 00001000000000000011 11122223333333 234555667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+| +|||||++|||||+.+|++|||||||++||+.+..++.+.++...+ +.|+|++||+++.+.. ||++++|++|+
T Consensus 152 LS--~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~ 229 (258)
T PRK11701 152 FS--GGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGR 229 (258)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 77 6999999999999999999999999999999999999999988643 7899999999999987 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (258)
T PRK11701 230 VVESGLTDQVLDD 242 (258)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999888654
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-35 Score=294.19 Aligned_cols=205 Identities=21% Similarity=0.333 Sum_probs=154.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.++|++|++...
T Consensus 21 ~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~-- 97 (280)
T PRK13649 21 RALFDVNLTIEDG-SYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQ-- 97 (280)
T ss_pred ceeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHHHHhheEEEeeChhhh--
Confidence 4799999999998 99999999999999999999999999999999999988754 3456788999999974211
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
++ .. ++.+++... .......... +..+.++.++.. .........+|
T Consensus 98 -------~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS- 147 (280)
T PRK13649 98 -------LF-------------EE------TVLKDVAFGPQNFGVSQEEAEA---LAREKLALVGISESLFEKNPFELS- 147 (280)
T ss_pred -------hc-------------cc------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCChhhhhCCcccCC-
Confidence 11 00 111110000 0000001111 111222233333 22344556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+.. ||++++|++|++++.
T Consensus 148 -gG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 226 (280)
T PRK13649 148 -GGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLS 226 (280)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEe
Confidence 699999999999999999999999999999999999999998864 37899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 227 g~~~~~~~~ 235 (280)
T PRK13649 227 GKPKDIFQD 235 (280)
T ss_pred CCHHHHhcC
Confidence 998887553
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=256.37 Aligned_cols=197 Identities=24% Similarity=0.321 Sum_probs=154.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~~ 274 (602)
..+++|++.+.+| |.+|||||||||||||+-+++|+-.|++|+|.+.|+++..++.+.. .+++++|+|..-
T Consensus 24 ~IL~~V~L~v~~G-e~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~---- 98 (228)
T COG4181 24 SILKGVELVVKRG-ETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAALRARHVGFVFQSFH---- 98 (228)
T ss_pred eEeecceEEecCC-ceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHhhccceeEEEEeee----
Confidence 4799999999998 9999999999999999999999999999999999999998876543 478999999511
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+-+-.+++..+..-.-+..........+.++.+++..-..|++.++|| ||
T Consensus 99 --------L-----------------ip~ltAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSG--GE 151 (228)
T COG4181 99 --------L-----------------IPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSG--GE 151 (228)
T ss_pred --------c-----------------cccchhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCc--hH
Confidence 1 01100001111000000000111122233445577777778999999995 99
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEe
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~ 427 (602)
+|||||||||...|+||+-||||-+||.+|-..+.+.+..+. .|.|.|+||||+....+|+|++-|++|++++
T Consensus 152 QQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 152 QQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceecc
Confidence 999999999999999999999999999999999999987764 3689999999999999999999999999975
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=293.07 Aligned_cols=208 Identities=24% Similarity=0.363 Sum_probs=158.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-hHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ...+++.++|++|++...+..
T Consensus 23 ~~vl~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~- 100 (280)
T PRK13633 23 KLALDDVNLEVKKG-EFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVA- 100 (280)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHHhhheEEEecChhhhhcc-
Confidence 35899999999998 999999999999999999999999999999999999987643 356788999999985321110
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..+.+++... ....... .....+..+.++.++..+........+| +|||
T Consensus 101 ---------------------------~~v~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--~G~~ 150 (280)
T PRK13633 101 ---------------------------TIVEEDVAFGPENLGIPP-EEIRERVDESLKKVGMYEYRRHAPHLLS--GGQK 150 (280)
T ss_pred ---------------------------ccHHHHHHhhHhhcCCCH-HHHHHHHHHHHHHCCCHhHhhCCcccCC--HHHH
Confidence 0000000000 0000000 0001112222334444444555667778 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++. .+.|||++||+++.+..||++++|++|+++..|++++
T Consensus 151 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~ 230 (280)
T PRK13633 151 QRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKE 230 (280)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999874 3789999999999987799999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 231 ~~~~ 234 (280)
T PRK13633 231 IFKE 234 (280)
T ss_pred HhcC
Confidence 8654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=286.47 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=156.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|++|++.
T Consensus 15 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 87 (242)
T TIGR03411 15 FKALNDLSLYVDPG-ELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIGRKFQKPT------ 87 (242)
T ss_pred eEEeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCeeEeccccc------
Confidence 45899999999998 9999999999999999999999999999999999999887766543 457999999732
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchh--HHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL--QRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.. .+...+-.............+ ........+..+.++.++..+........+| +||
T Consensus 88 -----~~~~------------~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Ge 148 (242)
T TIGR03411 88 -----VFEN------------LTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLS--HGQ 148 (242)
T ss_pred -----cCCC------------CCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCC--HHH
Confidence 1100 010000000000000000000 0000011122223334444444455556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++||||++.+|++|+|||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|++|++++.+++++
T Consensus 149 ~qrv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~ 228 (242)
T TIGR03411 149 KQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQ 228 (242)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHH
Confidence 99999999999999999999999999999999999999987667899999999999987 99999999999999998887
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 229 ~~~ 231 (242)
T TIGR03411 229 VQA 231 (242)
T ss_pred Hhc
Confidence 654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=291.08 Aligned_cols=211 Identities=19% Similarity=0.328 Sum_probs=155.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++....
T Consensus 24 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~---- 98 (265)
T PRK10575 24 RTLLHPLSLTFPAG-KVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAYLPQQLPAAE---- 98 (265)
T ss_pred EEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEEeccCCCCCC----
Confidence 45799999999988 9999999999999999999999999999999999999887777788889999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+...+-................ ....+..+.+..++...........+| ||||||
T Consensus 99 -------------------~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qr 155 (265)
T PRK10575 99 -------------------GMTVRELVAIGRYPWHGALGRFGA--ADREKVEEAISLVGLKPLAHRLVDSLS--GGERQR 155 (265)
T ss_pred -------------------CccHHHHHHhCcccccccccCCCH--HHHHHHHHHHHHcCCHHHhcCCcccCC--HHHHHH
Confidence 000000000000000000000000 001111222223333333344455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++. . ++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 156 v~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 235 (265)
T PRK10575 156 AWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAEL 235 (265)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHh
Confidence 999999999999999999999999999999999998874 3 7899999999999977 999999999999998888776
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 236 ~~ 237 (265)
T PRK10575 236 MR 237 (265)
T ss_pred cC
Confidence 43
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-35 Score=291.61 Aligned_cols=210 Identities=25% Similarity=0.323 Sum_probs=154.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++........++.++|++|++...+.
T Consensus 27 ~~l~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~---- 101 (267)
T PRK15112 27 EAVKPLSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLN---- 101 (267)
T ss_pred ceeeeeeEEecCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchhhHhccEEEEecCchhhcC----
Confidence 5899999999998 99999999999999999999999999999999999998755555566789999997421100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. .+.. +.+............... ..+..+.++.++.. .........+| +|||||
T Consensus 102 -~~----------------~tv~--~~l~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~qr 157 (267)
T PRK15112 102 -PR----------------QRIS--QILDFPLRLNTDLEPEQR---EKQIIETLRQVGLLPDHASYYPHMLA--PGQKQR 157 (267)
T ss_pred -cc----------------hhHH--HHHHHHHHhccCCCHHHH---HHHHHHHHHHcCCChHHHhcCchhcC--HHHHHH
Confidence 00 0000 000000000000000001 11122223333332 22233445677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.++++++
T Consensus 158 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 237 (267)
T PRK15112 158 LGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADV 237 (267)
T ss_pred HHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHH
Confidence 9999999999999999999999999999999999998743 7899999999999988 999999999999999998888
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 238 ~~~ 240 (267)
T PRK15112 238 LAS 240 (267)
T ss_pred hcC
Confidence 764
|
|
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-35 Score=287.01 Aligned_cols=199 Identities=29% Similarity=0.423 Sum_probs=148.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh---HHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~---~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++...+
T Consensus 19 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-- 95 (228)
T cd03257 19 KALDDVSFSIKKG-ETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSL-- 95 (228)
T ss_pred eeecCceeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhhccEEEEecCchhhc--
Confidence 5799999999998 9999999999999999999999999999999999999887663 467789999999742110
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHH-HHHHhhcccC-CcccccCCcCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQ-LKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ ...++.+++... ........ ...+. .+.++.++.. .........+|
T Consensus 96 -------~------------------~~~tv~~nl~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 147 (228)
T cd03257 96 -------N------------------PRMTIGEQIAEPLRIHGKLSKKE--ARKEAVLLLLVGVGLPEEVLNRYPHELS- 147 (228)
T ss_pred -------C------------------CcCCHHHHHHHHHHhccCCcHHH--HHHHHHHHHHHHCCCChhHhhCCchhcC-
Confidence 0 000111110000 00000000 00000 1222233332 23445556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
+|||||++|||||+.+|++|||||||++||+.+.+.+.+.+++..+ ++|||++||+++.+.. ||++++|++|++++
T Consensus 148 -~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 148 -GGQRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 6999999999999999999999999999999999999999988753 7899999999999986 99999999999976
Q ss_pred ec
Q psy3001 428 FD 429 (602)
Q Consensus 428 ~g 429 (602)
.|
T Consensus 227 ~g 228 (228)
T cd03257 227 EG 228 (228)
T ss_pred cC
Confidence 43
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-35 Score=292.39 Aligned_cols=207 Identities=22% Similarity=0.321 Sum_probs=157.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|++...+
T Consensus 16 ~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~--- 91 (275)
T PRK13639 16 EALKGINFKAEKG-EMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQL--- 91 (275)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheEEEeeChhhhh---
Confidence 4799999999998 9999999999999999999999999999999999998852 234567889999999842111
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+ .. ++.+++.... ..... ......+..+.++.++..+........+| +||+
T Consensus 92 ------~-------------~~------tv~e~i~~~~~~~~~~-~~~~~~~~~~~l~~~~L~~~~~~~~~~LS--~Gq~ 143 (275)
T PRK13639 92 ------F-------------AP------TVEEDVAFGPLNLGLS-KEEVEKRVKEALKAVGMEGFENKPPHHLS--GGQK 143 (275)
T ss_pred ------c-------------cc------cHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHCCCchhhcCChhhCC--HHHH
Confidence 1 00 1111100000 00000 00011122233334444444555566777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|+++||||||++||+.+...+.+.++++. ++.|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 144 qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~ 223 (275)
T PRK13639 144 KRVAIAGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKE 223 (275)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998875 47899999999999987 99999999999999999988
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 224 ~~~~ 227 (275)
T PRK13639 224 VFSD 227 (275)
T ss_pred HhcC
Confidence 7653
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-35 Score=295.12 Aligned_cols=205 Identities=19% Similarity=0.313 Sum_probs=153.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----C-ChHHHhhccceecccchhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----L-GLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~-~~~~~~~~i~~v~Q~~~~~~ 273 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. . +...+++.++|++|++...+
T Consensus 25 ~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 103 (289)
T PRK13645 25 KALNNTSLTFKKN-KVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQL 103 (289)
T ss_pred ceeeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccccHHHHhccEEEEEeCcchhh
Confidence 4799999999998 9999999999999999999999999999999999998752 1 34567889999999742110
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVT 349 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ls 349 (602)
+ ..+ +.+++... . ......... +..+.++.++. ..........+|
T Consensus 104 ---------~-------------~~t------v~enl~~~~~~~~~~~~~~~~---~~~~ll~~~~L~~~~~~~~~~~LS 152 (289)
T PRK13645 104 ---------F-------------QET------IEKDIAFGPVNLGENKQEAYK---KVPELLKLVQLPEDYVKRSPFELS 152 (289)
T ss_pred ---------h-------------hhH------HHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCChhHhcCChhhCC
Confidence 0 000 11100000 0 000011111 11122223333 223445556677
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+|||||++|||||+.+|++|||||||++||+.+++.+.+.|+++. .++|||++||+++.+.. ||++++|++|+++
T Consensus 153 --~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~ 230 (289)
T PRK13645 153 --GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVI 230 (289)
T ss_pred --HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEE
Confidence 699999999999999999999999999999999999999998864 37899999999999877 9999999999999
Q ss_pred eecChhHHhhc
Q psy3001 427 EFDSPSVLMKN 437 (602)
Q Consensus 427 ~~g~~~~l~~~ 437 (602)
+.|++++++..
T Consensus 231 ~~g~~~~~~~~ 241 (289)
T PRK13645 231 SIGSPFEIFSN 241 (289)
T ss_pred EeCCHHHHhcC
Confidence 99998887653
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=287.78 Aligned_cols=208 Identities=24% Similarity=0.395 Sum_probs=156.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC-------------hHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-------------LHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~-------------~~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++ ...+++.+++
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~ 91 (252)
T TIGR03005 13 LTVLDGLNFSVAAG-EKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGM 91 (252)
T ss_pred eeEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccchhHHHHHhhCeEE
Confidence 35799999999998 999999999999999999999999999999999999886543 2356789999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYS 342 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 342 (602)
++|++. ++. ..+ +.+++... ....... .....+..+.++.++......
T Consensus 92 v~q~~~-----------~~~------------~~t------v~~nl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~ 141 (252)
T TIGR03005 92 VFQSFN-----------LFP------------HKT------VLDNVTEAPVLVLGMAR-AEAEKRAMELLDMVGLADKAD 141 (252)
T ss_pred EecCcc-----------cCC------------CCc------HHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhHhh
Confidence 999732 110 011 11110000 0000000 000111222333344444445
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEE
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
.....+| +|||||++|||||+.+|+++||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.. ||++++
T Consensus 142 ~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~ 219 (252)
T TIGR03005 142 HMPAQLS--GGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCF 219 (252)
T ss_pred cChhhcC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEE
Confidence 5556677 6999999999999999999999999999999999999999988643 7899999999999976 999999
Q ss_pred EeCceEEeecChhHHhhcc
Q psy3001 420 LDKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~~ 438 (602)
|++|++++.|+++++.+..
T Consensus 220 l~~G~i~~~g~~~~~~~~~ 238 (252)
T TIGR03005 220 FDKGRIVEQGKPDEIFRQP 238 (252)
T ss_pred EECCEEEEeCCHHHHhcCC
Confidence 9999999999988886543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-35 Score=283.91 Aligned_cols=194 Identities=25% Similarity=0.373 Sum_probs=144.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..++.. .+++.++|++|++..
T Consensus 15 ~~il~~is~~i~~G-~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~--- 90 (214)
T TIGR02673 15 VAALHDVSLHIRKG-EFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRL--- 90 (214)
T ss_pred ceeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhh---
Confidence 35799999999998 99999999999999999999999999999999999999876543 467889999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..+ +.+++... ....... .....+..+.++.++...........+| +|
T Consensus 91 --------~~------------~~t------v~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 141 (214)
T TIGR02673 91 --------LP------------DRT------VYENVALPLEVRGKKE-REIQRRVGAALRQVGLEHKADAFPEQLS--GG 141 (214)
T ss_pred --------cc------------CCc------HHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC--HH
Confidence 10 001 11100000 0000000 0001112222333333333344445677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
||||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 142 ~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 142 EQQRVAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 9999999999999999999999999999999999999998864 47999999999999987 99999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-35 Score=283.30 Aligned_cols=192 Identities=26% Similarity=0.339 Sum_probs=145.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++.
T Consensus 15 ~~l~~~sl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~----- 88 (214)
T cd03292 15 AALDGINISISAG-EFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFR----- 88 (214)
T ss_pred eeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCch-----
Confidence 4799999999998 99999999999999999999999999999999999998776543 46788999999742
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++... ......... .+..+.++.++...........+| +
T Consensus 89 ------~~~------------~~t------~~~~l~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~ 139 (214)
T cd03292 89 ------LLP------------DRN------VYENVAFALEVTGVPPREIR---KRVPAALELVGLSHKHRALPAELS--G 139 (214)
T ss_pred ------hcc------------CCc------HHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCHHHhhCChhhcC--H
Confidence 110 001 11110000 000000011 111222233333333444455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||||++|||||+.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 140 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 140 GEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999999999998864 47899999999999987 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=285.68 Aligned_cols=206 Identities=24% Similarity=0.390 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 16 ~~~l~~~sl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 88 (241)
T PRK10895 16 RRVVEDVSLTVNSG-EIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYLPQEAS------ 88 (241)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeEEeccCCc------
Confidence 45899999999998 999999999999999999999999999999999999988776544 5678999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +||
T Consensus 89 -----~~~------------~~t------v~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~ 142 (241)
T PRK10895 89 -----IFR------------RLS------VYDNLMAVLQIRDDLSA-EQREDRANELMEEFHIEHLRDSMGQSLS--GGE 142 (241)
T ss_pred -----ccc------------cCc------HHHHHhhhhhcccccCH-HHHHHHHHHHHHHcCCHHHhhcchhhCC--HHH
Confidence 110 001 10100000 0000000 0011111222233333333344455677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.++... +++|+|++||+++.+.. ||++++|++|++++.++++
T Consensus 143 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (241)
T PRK10895 143 RRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPT 222 (241)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHH
Confidence 999999999999999999999999999999999999988764 47899999999998877 9999999999999999988
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 223 ~~~~ 226 (241)
T PRK10895 223 EILQ 226 (241)
T ss_pred HHhc
Confidence 7754
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-35 Score=282.38 Aligned_cols=193 Identities=24% Similarity=0.316 Sum_probs=146.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ..+++.++|++|++.
T Consensus 13 ~~~l~~~~~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~------- 82 (208)
T cd03268 13 KRVLDDISLHVKKG-EIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGALIEAPG------- 82 (208)
T ss_pred eEeEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEecCCCc-------
Confidence 35899999999998 99999999999999999999999999999999999987654 456788999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. . .++.+++.... .... ...+..+.++.++...........+| +||||
T Consensus 83 ----~~~------------~------~tv~e~l~~~~~~~~~-----~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 133 (208)
T cd03268 83 ----FYP------------N------LTARENLRLLARLLGI-----RKKRIDEVLDVVGLKDSAKKKVKGFS--LGMKQ 133 (208)
T ss_pred ----cCc------------c------CcHHHHHHHHHHhcCC-----cHHHHHHHHHHcCCHHHHhhhHhhCC--HHHHH
Confidence 110 0 11111100000 0000 00111122223333333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++||||++.+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 134 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 134 RLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred HHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999999998865 47899999999999987 9999999999998653
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-34 Score=286.25 Aligned_cols=220 Identities=30% Similarity=0.437 Sum_probs=173.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...++++|++..+| +.+||||+||||||||-.+|.+++++. |+|.++|.++..++..+ +|+.+-+|+|+|..-+.
T Consensus 300 ~~AVd~isl~L~~g-qTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLs 377 (534)
T COG4172 300 LRAVDGISLTLRRG-QTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLS 377 (534)
T ss_pred eEEeccceeEecCC-CeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccccChhhhhhhhhhceEEEeCCCCCCC
Confidence 46788888888888 999999999999999999999999888 99999999999888765 57899999999643221
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~G 353 (602)
|-+. +-..+...+..++ +.. ...++..+..+.+..+++++ ....+++..|| |
T Consensus 378 -----PRmt--------V~qII~EGL~vh~--------~~l----s~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG--G 430 (534)
T COG4172 378 -----PRMT--------VGQIIEEGLRVHE--------PKL----SAAERDQRVIEALEEVGLDPATRNRYPHEFSG--G 430 (534)
T ss_pred -----cccC--------HHHHhhhhhhhcC--------CCC----CHHHHHHHHHHHHHHcCCChhHhhcCCcccCc--c
Confidence 1100 0000000000000 011 11234455566666777765 46778899994 9
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+|||||++.+|++++||||||+||......+.+.|+++.+ +.+-++||||+..++. ||+|+||++|+|+|.|+
T Consensus 431 QRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~ 510 (534)
T COG4172 431 QRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510 (534)
T ss_pred hhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeCC
Confidence 99999999999999999999999999999999999999998753 6899999999999998 99999999999999999
Q ss_pred hhHHhhcchhHHHHHH
Q psy3001 431 PSVLMKNKASIFYSMA 446 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~~ 446 (602)
.++++.++...|....
T Consensus 511 ~~~if~~P~~~YT~~L 526 (534)
T COG4172 511 TEAVFANPQHEYTRAL 526 (534)
T ss_pred HHHHhcCCCcHHHHHH
Confidence 9999998887776543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=288.01 Aligned_cols=206 Identities=20% Similarity=0.313 Sum_probs=153.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 21 ~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 98 (254)
T PRK14273 21 KALNNINIKILKN-SITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPN- 98 (254)
T ss_pred eeecceeeEEcCC-CEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHHHHhhceEEEeeccc-
Confidence 4789999999988 99999999999999999999999997 48999999998753 234567889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc--c--chhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--C--SNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++. .++.+++.... . .............++ .++. ......
T Consensus 99 ----------~~~-------------------~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 146 (254)
T PRK14273 99 ----------PFL-------------------MSIYDNISYGPKIHGTKDKKKLDEIVEQSLK---KSALWNEVKDKLNT 146 (254)
T ss_pred ----------ccc-------------------CcHHHHHHHHHHhcCCCCHHHHHHHHHHHHH---HhCCchhhHHHHhC
Confidence 110 01111100000 0 000001111111112 2211 112333
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||+++|++
T Consensus 147 ~~~~LS--gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~ 224 (254)
T PRK14273 147 NALSLS--GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLN 224 (254)
T ss_pred CcccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455677 69999999999999999999999999999999999999999988667899999999999877 999999999
Q ss_pred ceEEeecChhHHhhcchh
Q psy3001 423 GLVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~ 440 (602)
|++++.|+++++...+..
T Consensus 225 G~i~~~g~~~~~~~~~~~ 242 (254)
T PRK14273 225 GCIEEESSTDELFFNPKN 242 (254)
T ss_pred CEEEEeCCHHHHHhCCCC
Confidence 999999999988765433
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=287.65 Aligned_cols=205 Identities=21% Similarity=0.280 Sum_probs=153.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecC--CCChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...+++.++|++|++.
T Consensus 17 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (253)
T PRK14267 17 NHVIKGVDLKIPQN-GVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPN 95 (253)
T ss_pred eeeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHHHhhceeEEecCCc
Confidence 34799999999998 99999999999999999999999987 4999999999986 3455567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-----ccchhHHHHHHHHHHHHHHhhcccC----Ccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-----FCSNLQRFYVATSRQLKRLESVSRS----PIY 341 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 341 (602)
++. ..+ +.+++... .............+. ++.++.. ...
T Consensus 96 -----------~~~------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~~~---l~~~~l~~~~~~~~ 143 (253)
T PRK14267 96 -----------PFP------------HLT------IYDNVAIGVKLNGLVKSKKELDERVEWA---LKKAALWDEVKDRL 143 (253)
T ss_pred -----------cCC------------CCc------HHHHHHHHHHhcCccCCHHHHHHHHHHH---HHHcCCccchhhhh
Confidence 110 000 11100000 000000111111111 2222221 123
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
......+| +|||||++|||||+.+|++|||||||++||+.+..++.+.|++..+++|+|++||+++.+.. ||++++|
T Consensus 144 ~~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l 221 (253)
T PRK14267 144 NDYPSNLS--GGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFL 221 (253)
T ss_pred ccChhhCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEE
Confidence 34455667 69999999999999999999999999999999999999999987667899999999999887 9999999
Q ss_pred eCceEEeecChhHHhhc
Q psy3001 421 DKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~ 437 (602)
++|++++.|++++++..
T Consensus 222 ~~G~i~~~~~~~~~~~~ 238 (253)
T PRK14267 222 YLGKLIEVGPTRKVFEN 238 (253)
T ss_pred ECCEEEEeCCHHHHHhC
Confidence 99999999999887654
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-34 Score=285.73 Aligned_cols=205 Identities=22% Similarity=0.337 Sum_probs=153.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... +++.++|++|++.
T Consensus 18 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 90 (237)
T PRK11614 18 IQALHEVSLHINQG-EIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRR------ 90 (237)
T ss_pred ceeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEEEeccCcc------
Confidence 45899999999998 999999999999999999999999999999999999988777654 5778999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++. .. ++.+++... .............+.++.+.. ...........+| +|||
T Consensus 91 -----~~~------------~~------tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~~~~LS--~G~~ 143 (237)
T PRK11614 91 -----VFS------------RM------TVEENLAMGGFFAERDQFQERIKWVYELFPR--LHERRIQRAGTMS--GGEQ 143 (237)
T ss_pred -----cCC------------CC------cHHHHHHHhhhccChhHHHHHHHHHHHHHHH--HHHHHhCchhhCC--HHHH
Confidence 110 00 011110000 000000111111111221110 1111223345666 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 144 qrl~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 223 (237)
T PRK11614 144 QMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDA 223 (237)
T ss_pred HHHHHHHHHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHH
Confidence 99999999999999999999999999999999999998864 47999999999998877 99999999999999999888
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 224 ~~~ 226 (237)
T PRK11614 224 LLA 226 (237)
T ss_pred Hhc
Confidence 764
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=286.94 Aligned_cols=207 Identities=25% Similarity=0.379 Sum_probs=155.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-------------ChHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-------------~~~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ....+++.++|
T Consensus 18 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 96 (257)
T PRK10619 18 HEVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTM 96 (257)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccccchHHHHHhhceEE
Confidence 45799999999988 99999999999999999999999999999999999987542 12456789999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcc-
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIY- 341 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~- 341 (602)
++|++. ++. ..++.+++.... ...... .....+..+.++.++.....
T Consensus 97 v~q~~~-----------l~~------------------~~sv~enl~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~ 146 (257)
T PRK10619 97 VFQHFN-----------LWS------------------HMTVLENVMEAPIQVLGLSK-QEARERAVKYLAKVGIDERAQ 146 (257)
T ss_pred EecCcc-----------cCC------------------CCcHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHHcCCChhhh
Confidence 999732 110 001111100000 000000 00111222333344443332
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
......+| +|||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. .++|+|+|||+++.+.. |||+++
T Consensus 147 ~~~~~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~ 224 (257)
T PRK10619 147 GKYPVHLS--GGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 224 (257)
T ss_pred hCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEE
Confidence 44456677 699999999999999999999999999999999999999998875 47999999999999987 999999
Q ss_pred EeCceEEeecChhHHhhc
Q psy3001 420 LDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~ 437 (602)
|++|++++.|+++++...
T Consensus 225 l~~G~i~~~~~~~~~~~~ 242 (257)
T PRK10619 225 LHQGKIEEEGAPEQLFGN 242 (257)
T ss_pred EECCEEEEeCCHHHhhhC
Confidence 999999999998887654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-35 Score=282.44 Aligned_cols=195 Identities=26% Similarity=0.394 Sum_probs=145.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ..++.++|++|++.
T Consensus 13 ~~~l~~v~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~~q~~~------- 80 (210)
T cd03269 13 VTALDDISFSVEKG-EIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYLPEERG------- 80 (210)
T ss_pred EEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEeccCCc-------
Confidence 35799999999998 9999999999999999999999999999999999987743 45678999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ......+..+.++.++..+........+| +||||
T Consensus 81 ----~~~------------~~------tv~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 135 (210)
T cd03269 81 ----LYP------------KM------KVIDQLVYLAQLKGLK-KEEARRRIDEWLERLELSEYANKRVEELS--KGNQQ 135 (210)
T ss_pred ----CCc------------CC------cHHHHHHHHHHHcCCC-hHHHHHHHHHHHHHcCChHHHhCcHhhCC--HHHHH
Confidence 110 00 111110000 000000 00011122223334444333444556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|++|||||+.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 136 rl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 136 KVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999998864 46899999999999987 9999999999997653
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=289.39 Aligned_cols=211 Identities=21% Similarity=0.314 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++....
T Consensus 20 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~---- 94 (265)
T PRK10253 20 YTVAENLTVEIPDG-HFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQNATTPG---- 94 (265)
T ss_pred EEEeeecceEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheEEeeccCcCCC----
Confidence 45799999999988 9999999999999999999999999999999999999988787788889999999843211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+...+-................ ....+..+.++.++...........+| +|||||
T Consensus 95 -------------------~~tv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--~Gq~qr 151 (265)
T PRK10253 95 -------------------DITVQELVARGRYPHQPLFTRWRK--EDEEAVTKAMQATGITHLADQSVDTLS--GGQRQR 151 (265)
T ss_pred -------------------CCcHHHHHHhCcccccccccCCCH--HHHHHHHHHHHHcCCHHHhcCCcccCC--hHHHHH
Confidence 000000000000000000000000 001111122223333333445566677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++||||++.+|++|||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988743 6899999999999987 999999999999999988776
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 43
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=276.32 Aligned_cols=181 Identities=29% Similarity=0.444 Sum_probs=154.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++||||++.+| |+++|||+|||||||+.|+|.|+++|++|+|.++|.++..++...
T Consensus 26 v~avd~Vsf~i~~g-e~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~~~~-------------------- 84 (268)
T COG4608 26 VKAVDGVSFSIKEG-ETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLSKEE-------------------- 84 (268)
T ss_pred eEEecceeEEEcCC-CEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcchhH--------------------
Confidence 36899999999998 999999999999999999999999999999999998876543111
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
...+..+.++.+++.+ ....+++.+|| ||+|
T Consensus 85 ----------------------------------------------~~~~v~elL~~Vgl~~~~~~ryPhelSG--GQrQ 116 (268)
T COG4608 85 ----------------------------------------------RRERVLELLEKVGLPEEFLYRYPHELSG--GQRQ 116 (268)
T ss_pred ----------------------------------------------HHHHHHHHHHHhCCCHHHhhcCCcccCc--hhhh
Confidence 1122333334444433 56778889994 9999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++++.|||+|+||.-.+..+...+.++.+ +.|.++||||++.+.. ||||.||..|+|++.|+.++
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~ 196 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEE 196 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHH
Confidence 99999999999999999999999999999999999988753 7899999999999999 99999999999999999999
Q ss_pred HhhcchhHHHHHHH
Q psy3001 434 LMKNKASIFYSMAK 447 (602)
Q Consensus 434 l~~~~~~~~~~~~~ 447 (602)
++.++...|.+..-
T Consensus 197 ~~~~p~HpYTk~Ll 210 (268)
T COG4608 197 VFSNPLHPYTKALL 210 (268)
T ss_pred HhhCCCCHHHHHHH
Confidence 99988888776553
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=287.06 Aligned_cols=207 Identities=27% Similarity=0.353 Sum_probs=157.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++...+
T Consensus 14 ~~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~---- 88 (256)
T TIGR03873 14 RLIVDGVDVTAPPG-SLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALVEQDSDTAV---- 88 (256)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEecccCccCC----
Confidence 45899999999998 9999999999999999999999999999999999999988887788888999999742111
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-c-hh-H-HHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-S-NL-Q-RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~-~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
..+ +.+++..... . .. . .......+..+.++.++...........+| +|
T Consensus 89 -------------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 141 (256)
T TIGR03873 89 -------------------PLT------VRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLS--GG 141 (256)
T ss_pred -------------------CCC------HHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCC--HH
Confidence 000 1000000000 0 00 0 000011112222333333333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++||||++.+|+++||||||++||+.+...+.+.|++..+ +.|+|++||+++.+.. ||+|++|++|++++.|+.
T Consensus 142 ~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 221 (256)
T TIGR03873 142 ERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPP 221 (256)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCH
Confidence 99999999999999999999999999999999999999988753 6899999999999976 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 222 ~~~~~ 226 (256)
T TIGR03873 222 REVLT 226 (256)
T ss_pred HHhhC
Confidence 77643
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=283.30 Aligned_cols=197 Identities=21% Similarity=0.298 Sum_probs=146.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---H-hhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---L-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~-~~~i~~v~Q~~~~~~~ 274 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... . ++.++|++|++.
T Consensus 24 ~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~---- 98 (228)
T PRK10584 24 SILTGVELVVKRG-ETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFM---- 98 (228)
T ss_pred EEEeccEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHHHhheEEEEEcccc----
Confidence 4799999999998 999999999999999999999999999999999999998776543 2 367999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++... ....... .....+..+.++.++...........+| +|
T Consensus 99 -------l~~------------~~------tv~~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 150 (228)
T PRK10584 99 -------LIP------------TL------NALENVELPALLRGESS-RQSRNGAKALLEQLGLGKRLDHLPAQLS--GG 150 (228)
T ss_pred -------cCC------------Cc------CHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCChhhCC--HH
Confidence 110 00 111110000 0000000 0011122222333343333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. + +.|||++||+++.+..||++++|++|++++.
T Consensus 151 e~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 151 EQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999999998864 3 6899999999998866999999999999753
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-34 Score=287.05 Aligned_cols=205 Identities=21% Similarity=0.298 Sum_probs=152.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCC--hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.... ...+++.++|++|++.
T Consensus 25 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 103 (258)
T PRK14268 25 KQALKNVSMQIPKN-SVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPN 103 (258)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHHHHhhhEEEEecCCc
Confidence 35799999999998 99999999999999999999999985 7999999999886432 3456788999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++ .. ++.+++... .......... +..+.++.++.. .....
T Consensus 104 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~ 150 (258)
T PRK14268 104 -----------PF-------------PM------SIYDNVAYGPRIHGANKKDLDG---VVENALRSAALWDETSDRLKS 150 (258)
T ss_pred -----------cC-------------cc------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCCCcchhhhhcC
Confidence 11 00 011110000 0000000011 111122222221 12233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~~~LS--gG~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~ 228 (258)
T PRK14268 151 PALSLS--GGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLM 228 (258)
T ss_pred ChhhCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEEC
Confidence 445666 69999999999999999999999999999999999999999987667999999999999977 999999999
Q ss_pred ceEEeecChhHHhhcc
Q psy3001 423 GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~ 438 (602)
|++++.+++++++..+
T Consensus 229 G~i~~~~~~~~~~~~~ 244 (258)
T PRK14268 229 GELIEFGQTRQIFHNP 244 (258)
T ss_pred CEEEEeCCHHHHhcCC
Confidence 9999999998886543
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=283.75 Aligned_cols=205 Identities=26% Similarity=0.383 Sum_probs=150.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++...+.
T Consensus 2 l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~-- 76 (230)
T TIGR02770 2 VQDLNLSLKRG-EVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFN-- 76 (230)
T ss_pred ccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcC--
Confidence 68999999998 99999999999999999999999999 899999999988653 2234689999998431110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC---CcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS---PIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~lsgs~G 353 (602)
+ ..+.. +.+.... ....... .....+..+.++.++.. .........+| +|
T Consensus 77 ---~----------------~~t~~--~~~~~~~--~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS--~G 129 (230)
T TIGR02770 77 ---P----------------LFTMG--NHAIETL--RSLGKLS--KQARALILEALEAVGLPDPEEVLKKYPFQLS--GG 129 (230)
T ss_pred ---c----------------ccCHH--HHHHHHH--HHcCccH--HHHHHHHHHHHHHcCCCchHHHHhCChhhcC--HH
Confidence 0 00000 0000000 0000000 00111122233333333 22344455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++||||++++|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|++|++++.++
T Consensus 130 ~~qrv~laral~~~p~vllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 209 (230)
T TIGR02770 130 MLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGT 209 (230)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988643 6899999999999987 99999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
++++...
T Consensus 210 ~~~~~~~ 216 (230)
T TIGR02770 210 VKEIFYN 216 (230)
T ss_pred HHHHHhC
Confidence 8888654
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-34 Score=287.12 Aligned_cols=211 Identities=24% Similarity=0.325 Sum_probs=156.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..
T Consensus 15 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~------ 87 (255)
T PRK11231 15 KRILNDLSLSLPTG-KITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALLPQHHLT------ 87 (255)
T ss_pred EEEEeeeeeEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEecccCCC------
Confidence 45899999999998 99999999999999999999999999999999999998877777788899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. ..+...+-................ ....+..+.++.++...........+| +||+||
T Consensus 88 -----~~------------~~tv~~~i~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 146 (255)
T PRK11231 88 -----PE------------GITVRELVAYGRSPWLSLWGRLSA--EDNARVNQAMEQTRINHLADRRLTDLS--GGQRQR 146 (255)
T ss_pred -----CC------------CccHHHHHHhccchhhhhccCCCH--HHHHHHHHHHHHcCCHHHHcCCcccCC--HHHHHH
Confidence 10 000000000000000000000000 001111222223333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++..++++++.
T Consensus 147 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 226 (255)
T PRK11231 147 AFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226 (255)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhc
Confidence 999999999999999999999999999999999998864 47899999999999987 9999999999999988877764
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 227 ~ 227 (255)
T PRK11231 227 T 227 (255)
T ss_pred C
Confidence 3
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-34 Score=281.83 Aligned_cols=192 Identities=29% Similarity=0.445 Sum_probs=141.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++....
T Consensus 12 ~~~l~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~---- 81 (213)
T cd03235 12 HPVLEDVSFEVKPG-EFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDR---- 81 (213)
T ss_pred EEeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEecccccccc----
Confidence 45799999999998 999999999999999999999999999999999998764 46788999999743110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc------hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS------NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.+ .. ++.+++...... .... ....+..+.++.++..+........+|
T Consensus 82 ----~~-------------~~------tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS-- 134 (213)
T cd03235 82 ----DF-------------PI------SVRDVVLMGLYGHKGLFRRLSK--ADKAKVDEALERVGLSELADRQIGELS-- 134 (213)
T ss_pred ----CC-------------CC------cHHHHHHhccccccccccCCCH--HHHHHHHHHHHHcCCHHHHhCCcccCC--
Confidence 00 00 111110000000 0000 001111222223333333344456677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.+++.. +++|+|++||+++++.. ||++++|++| +++
T Consensus 135 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 135 GGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 699999999999999999999999999999999999999998865 57899999999999987 9999999886 444
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=286.74 Aligned_cols=206 Identities=20% Similarity=0.331 Sum_probs=152.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .....+++.++|++|++.
T Consensus 20 ~il~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 97 (253)
T PRK14242 20 QALHDISLEFEQN-QVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVVELRRRVGMVFQKPN- 97 (253)
T ss_pred eeecceeEEEeCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHHHHhhcEEEEecCCC-
Confidence 4789999999988 9999999999999999999999974 589999999998864 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++.... ............+..+.++.++.. ........
T Consensus 98 ----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (253)
T PRK14242 98 ----------PF-------------PK------SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESAL 148 (253)
T ss_pred ----------CC-------------cC------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcc
Confidence 11 00 1111100000 000000000011111122222221 12233455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14242 149 GLS--GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKL 226 (253)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999988667899999999999977 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 227 ~~~g~~~~~~~~ 238 (253)
T PRK14242 227 IEVGPTEQIFTR 238 (253)
T ss_pred EEeCCHHHHHcC
Confidence 999998887654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-34 Score=283.55 Aligned_cols=203 Identities=24% Similarity=0.358 Sum_probs=151.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-Hhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|++|++.
T Consensus 13 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 85 (230)
T TIGR03410 13 SHILRGVSLEVPKG-EVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAYVPQGRE------ 85 (230)
T ss_pred eEEecceeeEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEEeccCCc------
Confidence 35899999999998 999999999999999999999999999999999999988776554 4678999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..+... .+.... ......... ...+.++.+.. ...........+| +||||
T Consensus 86 -----~~~------------~~tv~~--~l~~~~-~~~~~~~~~---~~~~~l~~~~~--l~~~~~~~~~~LS--~G~~q 138 (230)
T TIGR03410 86 -----IFP------------RLTVEE--NLLTGL-AALPRRSRK---IPDEIYELFPV--LKEMLGRRGGDLS--GGQQQ 138 (230)
T ss_pred -----ccC------------CCcHHH--HHHHHH-HhcCcchHH---HHHHHHHHHHh--HHHHhhCChhhCC--HHHHH
Confidence 110 000000 000000 000000000 01111111110 1112334455667 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+++|++++|||||++||+.+..++.+.|++..+ ++|+|++||+++.+.. ||+++++++|++++.+++++
T Consensus 139 rv~la~al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~ 218 (230)
T TIGR03410 139 QLAIARALVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDE 218 (230)
T ss_pred HHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999988653 6899999999999987 99999999999999998877
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 219 ~ 219 (230)
T TIGR03410 219 L 219 (230)
T ss_pred c
Confidence 6
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-35 Score=263.98 Aligned_cols=211 Identities=24% Similarity=0.351 Sum_probs=163.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~ 275 (602)
.+..+++||+++.+| |++|+.|||||||||.+.++.|+.+|++|+|.+||.|++.++.... |-.|+|+||++.
T Consensus 16 kr~Vv~~Vsl~v~~G-EiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~S----- 89 (243)
T COG1137 16 KRKVVNDVSLEVNSG-EIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEAS----- 89 (243)
T ss_pred CeeeeeeeeEEEcCC-cEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccch-----
Confidence 456899999999998 9999999999999999999999999999999999999999998765 457999999843
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccc--cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+|- .- ++++++.. +.............+....++.+....+....+.+|| ||
T Consensus 90 ------IFr------------~L------tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~sLS--GG 143 (243)
T COG1137 90 ------IFR------------KL------TVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAYSLS--GG 143 (243)
T ss_pred ------Hhh------------cC------cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCcccccc--cc
Confidence 221 11 11111110 0000000000111111223334455555666677777 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||+|+.|||||+.+|+.++||||++++||.+...|++.++.++. |..|++..|+..+... |||.+++.+|++...|++
T Consensus 144 ERRR~EIARaLa~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 144 ERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred hHHHHHHHHHHhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence 99999999999999999999999999999999999999988754 7899999999877766 999999999999999999
Q ss_pred hHHhhcch
Q psy3001 432 SVLMKNKA 439 (602)
Q Consensus 432 ~~l~~~~~ 439 (602)
+++..++.
T Consensus 224 ~ei~~n~~ 231 (243)
T COG1137 224 EEIVNNED 231 (243)
T ss_pred HHHhcChh
Confidence 99987643
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-34 Score=282.78 Aligned_cols=207 Identities=34% Similarity=0.473 Sum_probs=154.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 16 ~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 87 (238)
T cd03249 16 VPILKGLSLTIPPG-KTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPV------- 87 (238)
T ss_pred ccceeceEEEecCC-CEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchh-------
Confidence 35799999999998 9999999999999999999999999999999999999887777777888999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+ +.+++...... .......... ...+.+..+ +...........+| +
T Consensus 88 ----~~-------------~~t------v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS--~ 142 (238)
T cd03249 88 ----LF-------------DGT------IAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLS--G 142 (238)
T ss_pred ----hh-------------hhh------HHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCC--H
Confidence 11 000 00000000000 0000000000 001111111 11222334455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.++.+
T Consensus 143 G~~qrv~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~ 222 (238)
T cd03249 143 GQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHD 222 (238)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998876679999999999998779999999999999988877
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 223 ~~~~~ 227 (238)
T cd03249 223 ELMAQ 227 (238)
T ss_pred HHhhc
Confidence 76543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-34 Score=298.62 Aligned_cols=198 Identities=22% Similarity=0.363 Sum_probs=155.4
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... .....++.++|++|++.
T Consensus 16 ~vsl~i~~G-e~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~-------- 86 (352)
T PRK11144 16 TVNLTLPAQ-GITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRRIGYVFQDAR-------- 86 (352)
T ss_pred EEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCCEEEEcCCcc--------
Confidence 899999998 99999999999999999999999999999999999988643 23345788999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+|. ..++.+++.... .. ....+..+.++.++..+........+| ||||||+
T Consensus 87 ---l~~------------------~~tv~enl~~~~----~~--~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qRv 137 (352)
T PRK11144 87 ---LFP------------------HYKVRGNLRYGM----AK--SMVAQFDKIVALLGIEPLLDRYPGSLS--GGEKQRV 137 (352)
T ss_pred ---cCC------------------CCcHHHHHHhhh----hh--hhHHHHHHHHHHcCCchhhhCCcccCC--HHHHHHH
Confidence 110 011111111000 00 011122333445555555566677788 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||++++|++|++++.|++++++
T Consensus 138 alaraL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~ 217 (352)
T PRK11144 138 AIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVW 217 (352)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHH
Confidence 999999999999999999999999999999999988643 6899999999999987 9999999999999999999987
Q ss_pred hcc
Q psy3001 436 KNK 438 (602)
Q Consensus 436 ~~~ 438 (602)
..+
T Consensus 218 ~~p 220 (352)
T PRK11144 218 ASS 220 (352)
T ss_pred hCc
Confidence 754
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=271.19 Aligned_cols=165 Identities=32% Similarity=0.500 Sum_probs=140.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|-.
T Consensus 12 ~~~l~~~~~~i~~G-~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~l-------- 82 (180)
T cd03214 12 RTVLDDLSLSIEAG-EIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVPQAL-------- 82 (180)
T ss_pred eeeEeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHHHHH--------
Confidence 35899999999998 999999999999999999999999999999999999998888777788888888610
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
....+. +........+| +|||||
T Consensus 83 ------------------------------------~~~gl~-------------------~~~~~~~~~LS--~G~~qr 105 (180)
T cd03214 83 ------------------------------------ELLGLA-------------------HLADRPFNELS--GGERQR 105 (180)
T ss_pred ------------------------------------HHcCCH-------------------hHhcCCcccCC--HHHHHH
Confidence 000000 00112234566 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
++|||||+.+|+++||||||++||+++...+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 106 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 106 VLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred HHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999988754 6899999999999876 999999999998754
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-34 Score=283.61 Aligned_cols=204 Identities=28% Similarity=0.380 Sum_probs=153.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------CChHHHhhccceecccchhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------~~~~~~~~~i~~v~Q~~~~~ 272 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++.
T Consensus 16 ~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~-- 92 (242)
T PRK11124 16 QALFDITLDCPQG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYN-- 92 (242)
T ss_pred eeEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHHHhheEEEecCcc--
Confidence 4799999999998 9999999999999999999999999999999999998731 223566789999999732
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccc-cc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
++. . .++.+++.. .. ...... .....+..+.++.++...........+|
T Consensus 93 ---------~~~------------~------~tv~e~i~~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS- 143 (242)
T PRK11124 93 ---------LWP------------H------LTVQQNLIEAPCRVLGLSK-DQALARAEKLLERLRLKPYADRFPLHLS- 143 (242)
T ss_pred ---------ccC------------C------CcHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhhhhCChhhCC-
Confidence 110 0 011111000 00 000000 0011122233334444444455556677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|+++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.
T Consensus 144 -~G~~qrv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~ 222 (242)
T PRK11124 144 -GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQ 222 (242)
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEe
Confidence 6999999999999999999999999999999999999999988753 7999999999999987 999999999999999
Q ss_pred cChhHHh
Q psy3001 429 DSPSVLM 435 (602)
Q Consensus 429 g~~~~l~ 435 (602)
++++++.
T Consensus 223 ~~~~~~~ 229 (242)
T PRK11124 223 GDASCFT 229 (242)
T ss_pred CCHHHhc
Confidence 8877653
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-34 Score=278.78 Aligned_cols=192 Identities=23% Similarity=0.355 Sum_probs=142.9
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++. +
T Consensus 16 ~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~-----------~ 81 (211)
T cd03298 16 HFDLTFAQG-EITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENN-----------L 81 (211)
T ss_pred ceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccc-----------c
Confidence 899999998 9999999999999999999999999999999999999876554 3578999999742 1
Q ss_pred EeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr 362 (602)
+. ..+ +.+++................+..+.++.++..+........+| +|||||++|||
T Consensus 82 ~~------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~ia~ 141 (211)
T cd03298 82 FA------------HLT------VEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELS--GGERQRVALAR 141 (211)
T ss_pred CC------------CCc------HHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCC--HHHHHHHHHHH
Confidence 10 001 11110000000000000001112222333343333444556677 69999999999
Q ss_pred HHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 363 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||+.+|++|||||||++||+.++..+.+.++++. .++|+|++||+++.+.. ||++++|++|++++.
T Consensus 142 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 142 VLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999999999999999999999998864 37899999999999987 999999999999764
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=281.81 Aligned_cols=205 Identities=35% Similarity=0.525 Sum_probs=153.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 17 ~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 87 (229)
T cd03254 17 PVLKDINFSIKPG-ETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTF-------- 87 (229)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCch--------
Confidence 4799999999998 9999999999999999999999999999999999999888777788899999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
++ ..+...+ + ..... ............ .+ +.++.. +...........+| +|
T Consensus 88 ---~~-------------~~tv~~~--~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--~G 143 (229)
T cd03254 88 ---LF-------------SGTIMEN--I----RLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLS--QG 143 (229)
T ss_pred ---hh-------------hhHHHHH--H----hccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCC--HH
Confidence 11 0011000 0 00000 000011000000 01 111111 11222333455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+.+|++|||||||++||+.+.+.+.+.++++.+++|+|++||+++.+..||++++|++|+++..++.++
T Consensus 144 ~~~rv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~ 223 (229)
T cd03254 144 ERQLLAIARAMLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDE 223 (229)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHH
Confidence 99999999999999999999999999999999999999998866899999999999987799999999999998888766
Q ss_pred Hhh
Q psy3001 434 LMK 436 (602)
Q Consensus 434 l~~ 436 (602)
+..
T Consensus 224 ~~~ 226 (229)
T cd03254 224 LLA 226 (229)
T ss_pred HHh
Confidence 643
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=276.07 Aligned_cols=185 Identities=50% Similarity=0.732 Sum_probs=146.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 22 ~~l~~isl~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~-------- 92 (207)
T cd03369 22 PVLKNVSFKVKAG-EKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPT-------- 92 (207)
T ss_pred ccccCceEEECCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCc--------
Confidence 4788888888888 9999999999999999999999999999999999999988887788899999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ ..+ +.+++........ .+..+.++ .......+| +||+||+
T Consensus 93 ---~~-------------~~t------v~~~l~~~~~~~~-------~~~~~~l~-------~~~~~~~LS--~G~~qrv 134 (207)
T cd03369 93 ---LF-------------SGT------IRSNLDPFDEYSD-------EEIYGALR-------VSEGGLNLS--QGQRQLL 134 (207)
T ss_pred ---cc-------------Ccc------HHHHhcccCCCCH-------HHHHHHhh-------ccCCCCcCC--HHHHHHH
Confidence 21 111 1111000000000 01111111 233455667 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
+|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 135 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 135 CLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206 (207)
T ss_pred HHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCC
Confidence 999999999999999999999999999999999998766899999999999987799999999999988765
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-34 Score=262.70 Aligned_cols=212 Identities=25% Similarity=0.343 Sum_probs=160.2
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.++-.+++||+..++| |+.||+||||||||||+|.|+|...|++|++.++|.++.++++.++.++-+++||+...-|-+
T Consensus 12 ~Gr~ll~~vsl~~~pG-ev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF 90 (259)
T COG4559 12 AGRRLLDGVSLDLRPG-EVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF 90 (259)
T ss_pred ecceeccCcceeccCC-cEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhcccCcccccce
Confidence 4566799999999998 999999999999999999999999999999999999999999999999999999975433311
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
.. +..... ..+ -........+......+. +...+...+....-..|| ||||
T Consensus 91 tv-------------------~eVV~m-Gr~----p~~~g~~~~e~~~i~~~a---la~~d~~~la~R~y~~LS--GGEq 141 (259)
T COG4559 91 TV-------------------QEVVQM-GRI----PHRSGREPEEDERIAAQA---LAATDLSGLAGRDYRTLS--GGEQ 141 (259)
T ss_pred EH-------------------HHHHHh-ccc----ccccCCCchhhHHHHHHH---HHHcChhhhhccchhhcC--chHH
Confidence 00 000000 000 000000000111111111 223333333444445677 5999
Q ss_pred HHHHHHHHHhh------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 356 QLICLARALLR------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 356 Qrl~lAral~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
|||.+||.|.+ ++++|+||||||+||......+.+..+++. ++..|+.|-||++.... ||||++|.+||++.
T Consensus 142 QRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a 221 (259)
T COG4559 142 QRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIA 221 (259)
T ss_pred HHHHHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEee
Confidence 99999999987 345999999999999999999999999875 57899999999999987 99999999999999
Q ss_pred ecChhHHhhc
Q psy3001 428 FDSPSVLMKN 437 (602)
Q Consensus 428 ~g~~~~l~~~ 437 (602)
.|++++.+..
T Consensus 222 ~g~p~~vlt~ 231 (259)
T COG4559 222 SGSPQDVLTD 231 (259)
T ss_pred cCCHHHhcCH
Confidence 9999998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=281.85 Aligned_cols=201 Identities=23% Similarity=0.325 Sum_probs=150.0
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..... .++.++|++|++. +
T Consensus 17 ~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~-----------~ 82 (232)
T PRK10771 17 RFDLTVERG-ERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSMLFQENN-----------L 82 (232)
T ss_pred eeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEEecccc-----------c
Confidence 899999888 9999999999999999999999999999999999998876543 2567999999732 1
Q ss_pred EeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR 362 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr 362 (602)
+. .. ++.+++................+..+.++.++..+........+| +|||||++|||
T Consensus 83 ~~------------~~------tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~lar 142 (232)
T PRK10771 83 FS------------HL------TVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLS--GGQRQRVALAR 142 (232)
T ss_pred cc------------CC------cHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCC--HHHHHHHHHHH
Confidence 10 00 111110000000000000011122223333444334455556677 69999999999
Q ss_pred HHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhc
Q psy3001 363 ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 363 al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|++.+|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 143 al~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 143 CLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999988643 7899999999999987 999999999999999988877654
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-34 Score=269.90 Aligned_cols=163 Identities=29% Similarity=0.496 Sum_probs=139.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|++
T Consensus 16 ~~l~~i~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~--------- 84 (178)
T cd03247 16 QVLKNLSLELKQG-EKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISVLNQRP--------- 84 (178)
T ss_pred cceEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEEEccCC---------
Confidence 4799999999998 99999999999999999999999999999999999988665 566788899999962
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++.+ .+ ...+| +|||||+
T Consensus 85 --~~~-------------~------~tv~~-------------------------~i---------~~~LS--~G~~qrv 107 (178)
T cd03247 85 --YLF-------------D------TTLRN-------------------------NL---------GRRFS--GGERQRL 107 (178)
T ss_pred --eee-------------c------ccHHH-------------------------hh---------cccCC--HHHHHHH
Confidence 211 0 00000 00 33566 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeec
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
+||||++.+|++|||||||++||+.+.+.+.+.+++..++.|+|++||+++.+..||++++|++|++++.|
T Consensus 108 ~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 108 ALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999998876679999999999998779999999999997643
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-34 Score=285.00 Aligned_cols=203 Identities=23% Similarity=0.343 Sum_probs=152.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 27 ~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 104 (260)
T PRK10744 27 HALKNINLDIAKN-QVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPT- 104 (260)
T ss_pred EEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccchHHHhcceEEEecCCc-
Confidence 5799999999988 9999999999999999999999986 589999999998853 345677889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc--cc--chhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FC--SNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++ ..+ +.+++... .. ........ +..+.++..+.. .....
T Consensus 105 ----------~~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~ 152 (260)
T PRK10744 105 ----------PF-------------PMS------IYDNIAFGVRLFEKLSRAEMDE---RVEWALTKAALWNEVKDKLHQ 152 (260)
T ss_pred ----------cC-------------cCc------HHHHHhhhHhhcCCCCHHHHHH---HHHHHHHHcCCChhhHHHHhc
Confidence 11 000 10100000 00 00000011 111222222221 12334
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+++.+.+.|++..++.|+|++||+++.+.. ||++++|++
T Consensus 153 ~~~~LS--~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~ 230 (260)
T PRK10744 153 SGYSLS--GGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYL 230 (260)
T ss_pred CCCCCC--HHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455677 69999999999999999999999999999999999999999988667899999999999977 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 231 G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 231 GELIEFGNTDTIFTK 245 (260)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999998887654
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-34 Score=284.81 Aligned_cols=220 Identities=24% Similarity=0.333 Sum_probs=154.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+ +..++|++|++.
T Consensus 18 ~~~l~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~------ 90 (255)
T PRK11300 18 LLAVNNVNLEVREQ-EIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVVRTFQHVR------ 90 (255)
T ss_pred EEEEEeeeeEEcCC-eEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeEEeccCcc------
Confidence 45899999999998 9999999999999999999999999999999999999987765554 446889999742
Q ss_pred cCCceeEee-ecccceeeeccccceeeccc-ccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFV-IVPVSVLYFFIQVSLIFTED-VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.. .+.....+..... ...+ ............. ......+..+.++.++...........+| +||
T Consensus 91 -----~~~~~tv~enl~~~~~~~---~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~ 158 (255)
T PRK11300 91 -----LFREMTVIENLLVAQHQQ---LKTGLFSGLLKTPAFRRA--ESEALDRAATWLERVGLLEHANRQAGNLA--YGQ 158 (255)
T ss_pred -----cCCCCcHHHHHHHhhhcc---ccchhhhhhccccccccc--hhHHHHHHHHHHHhCChhhhhhCChhhCC--HHH
Confidence 1110 0000000000000 0000 0000000000000 00001111222233334344455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|||++||+++.+.. ||++++|++|+++..+++
T Consensus 159 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~ 238 (255)
T PRK11300 159 QRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTP 238 (255)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCH
Confidence 9999999999999999999999999999999999999988643 6899999999999987 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 239 ~~~~~ 243 (255)
T PRK11300 239 EEIRN 243 (255)
T ss_pred HHHhh
Confidence 77654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-34 Score=280.52 Aligned_cols=206 Identities=32% Similarity=0.479 Sum_probs=155.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 14 ~~~l~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 85 (236)
T cd03253 14 RPVLKDVSFTIPAG-KKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTV------- 85 (236)
T ss_pred CceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCCh-------
Confidence 34799999999998 9999999999999999999999999999999999999988888888889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ ..+. .+++..... ........... ...+.+..+ +...........+| +
T Consensus 86 ----~~-------------~~tv------~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS--~ 140 (236)
T cd03253 86 ----LF-------------NDTI------GYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLS--G 140 (236)
T ss_pred ----hh-------------cchH------HHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC--H
Confidence 21 1111 111000000 00000000000 001111111 11222333455677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+.+|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+..||++++|++|++++.++.+
T Consensus 141 G~~~rl~la~aL~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~ 220 (236)
T cd03253 141 GEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHE 220 (236)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHH
Confidence 99999999999999999999999999999999999999998876688999999999999779999999999999988887
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 221 ~~~~ 224 (236)
T cd03253 221 ELLA 224 (236)
T ss_pred HHhh
Confidence 7654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-34 Score=279.29 Aligned_cols=199 Identities=56% Similarity=0.796 Sum_probs=150.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 18 ~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~-------- 88 (221)
T cd03244 18 PVLKNISFSIKPG-EKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPV-------- 88 (221)
T ss_pred ccccceEEEECCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCc--------
Confidence 4799999999998 9999999999999999999999999999999999999988888888999999999742
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH-HH-HHHh--hcccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR-QL-KRLE--SVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~l~--~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++ ..+...+ + .........+......+ .+ +.+. ..+...........+| +||
T Consensus 89 ---l~-------------~~tv~en--l----~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS--~G~ 144 (221)
T cd03244 89 ---LF-------------SGTIRSN--L----DPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLS--VGQ 144 (221)
T ss_pred ---cc-------------cchHHHH--h----CcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCC--HHH
Confidence 11 1111110 0 00000000111110000 00 1111 0111222234556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||++|||||+.+|+++||||||++||+.++..+.+.+++..++.|+|++||+++.+..||++++|++|++++.++
T Consensus 145 ~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 145 RQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 9999999999999999999999999999999999999998766789999999999998899999999999988764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-34 Score=280.36 Aligned_cols=205 Identities=24% Similarity=0.362 Sum_probs=154.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++...+. .++.+++++|++.
T Consensus 13 ~~il~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~------- 82 (232)
T cd03300 13 FVALDGVSLDIKEG-EFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTVFQNYA------- 82 (232)
T ss_pred eeeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEEecccc-------
Confidence 35899999999998 9999999999999999999999999999999999998876554 3678999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..+ +.+++.... ..... ......+....++.++..+........+| +||||
T Consensus 83 ----~~~------------~~t------~~~nl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~G~~q 137 (232)
T cd03300 83 ----LFP------------HLT------VFENIAFGLRLKKLP-KAEIKERVAEALDLVQLEGYANRKPSQLS--GGQQQ 137 (232)
T ss_pred ----cCC------------CCc------HHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 110 001 111100000 00000 00001111222233444444555556677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++++.. ||++++|++|++++.+++++
T Consensus 138 rl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~ 217 (232)
T cd03300 138 RVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEE 217 (232)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHH
Confidence 99999999999999999999999999999999999988753 7899999999999877 99999999999999998877
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 218 ~~~~ 221 (232)
T cd03300 218 IYEE 221 (232)
T ss_pred HHhC
Confidence 7653
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-34 Score=278.80 Aligned_cols=195 Identities=27% Similarity=0.420 Sum_probs=145.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++.
T Consensus 13 ~~~l~~~s~~i~~G-~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~----- 86 (213)
T cd03262 13 FHVLKGIDLTVKKG-EVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVGMVFQQFN----- 86 (213)
T ss_pred eEeecCceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcceEEecccc-----
Confidence 35799999999998 9999999999999999999999999999999999998853 344567889999999742
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+ +.+++.... ...... .....+..+.++.++..+........+| +|
T Consensus 87 ------~~~------------~~t------~~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 139 (213)
T cd03262 87 ------LFP------------HLT------VLENITLAPIKVKGMSK-AEAEERALELLEKVGLADKADAYPAQLS--GG 139 (213)
T ss_pred ------cCC------------CCc------HHHHHHhHHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhhCccccC--HH
Confidence 110 001 111100000 000000 0011112222333333333445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
||||++||||++.+|++|||||||++||+.+.+++.+.++++. .++|+|++||+++.+.. ||++++|++|++
T Consensus 140 ~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 140 QQQRVAIARALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999999999875 47899999999999987 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-34 Score=284.49 Aligned_cols=207 Identities=21% Similarity=0.289 Sum_probs=152.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 32 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 110 (267)
T PRK14235 32 KQALFDVDLDIPEK-TVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPN 110 (267)
T ss_pred EEEEEEEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccchHHHhhceEEEecCCC
Confidence 35788888888888 99999999999999999999999975 89999999999864 345567889999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhH-HHHHHHHHHHHHHhhcccCC----ccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQ-RFYVATSRQLKRLESVSRSP----IYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~l~~~~~~~----~~~~~ 344 (602)
++ .. ++.+++.... ..... .......+..+.++.++... .....
T Consensus 111 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 160 (267)
T PRK14235 111 -----------PF-------------PK------SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEP 160 (267)
T ss_pred -----------CC-------------CC------cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCC
Confidence 11 00 0111100000 00000 00000011112222222221 22334
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++|
T Consensus 161 ~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G 238 (267)
T PRK14235 161 GTGLS--GGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLG 238 (267)
T ss_pred cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECC
Confidence 55677 69999999999999999999999999999999999999999987667899999999999977 9999999999
Q ss_pred eEEeecChhHHhhc
Q psy3001 424 LVVEFDSPSVLMKN 437 (602)
Q Consensus 424 ~i~~~g~~~~l~~~ 437 (602)
++++.++++++...
T Consensus 239 ~i~~~g~~~~~~~~ 252 (267)
T PRK14235 239 NLVEVGDTEKMFTN 252 (267)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-34 Score=280.09 Aligned_cols=203 Identities=25% Similarity=0.408 Sum_probs=153.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..... .++.+++++|++.
T Consensus 14 ~l~~is~~i~~G-e~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~~q~~~--------- 81 (235)
T cd03299 14 KLKNVSLEVERG-DYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYVPQNYA--------- 81 (235)
T ss_pred eeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEEeecCc---------
Confidence 599999999998 9999999999999999999999999999999999999876554 3678999999732
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. ..+ +.+++.... ..... ......+..+.++.++..+........+| +|||||+
T Consensus 82 --~~~------------~~t------~~e~l~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl 138 (235)
T cd03299 82 --LFP------------HMT------VYKNIAYGLKKRKVD-KKEIERKVLEIAEMLGIDHLLNRKPETLS--GGEQQRV 138 (235)
T ss_pred --cCC------------Ccc------HHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCChhHHhcCcccCC--HHHHHHH
Confidence 110 001 111100000 00000 00011112223334444444455556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+||||++.+|++++|||||++||+.+.+++.+.+++... ++|+|++||+++.+.. ||++++|++|++++.++++++.
T Consensus 139 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 218 (235)
T cd03299 139 AIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218 (235)
T ss_pred HHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999988643 7899999999999887 9999999999999999887775
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 219 ~~ 220 (235)
T cd03299 219 KK 220 (235)
T ss_pred hC
Confidence 54
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-34 Score=296.85 Aligned_cols=201 Identities=20% Similarity=0.306 Sum_probs=154.2
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC----hHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~----~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ....++.++|++|++.
T Consensus 15 ~isl~i~~G-ei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~-------- 85 (354)
T TIGR02142 15 DADFTLPGQ-GVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEAR-------- 85 (354)
T ss_pred EEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEEecCCc--------
Confidence 899999998 999999999999999999999999999999999999886532 2356778999999732
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+|. . .++.+++..... .... ....+..+.++.++..+........+| ||||||
T Consensus 86 ---l~~------------~------~tv~enl~~~~~~~~~~---~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGqkqR 139 (354)
T TIGR02142 86 ---LFP------------H------LSVRGNLRYGMKRARPS---ERRISFERVIELLGIGHLLGRLPGRLS--GGEKQR 139 (354)
T ss_pred ---cCC------------C------CcHHHHHHHHhhccChh---HHHHHHHHHHHHcCChhHhcCChhhCC--HHHHHH
Confidence 110 0 011111100000 0000 011122233334455555566667788 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|+|||||++||+.+++.+.+.|+++.+ ++|+|++||+++++.. ||++++|++|+++..|+++++
T Consensus 140 valAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 219 (354)
T TIGR02142 140 VAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEV 219 (354)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHH
Confidence 9999999999999999999999999999999999988643 6899999999999987 999999999999999998888
Q ss_pred hhcc
Q psy3001 435 MKNK 438 (602)
Q Consensus 435 ~~~~ 438 (602)
+..+
T Consensus 220 ~~~~ 223 (354)
T TIGR02142 220 WASP 223 (354)
T ss_pred hcCc
Confidence 7653
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-34 Score=267.91 Aligned_cols=157 Identities=31% Similarity=0.534 Sum_probs=137.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|++++|++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++
T Consensus 16 ~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~--------- 85 (173)
T cd03246 16 PVLRNVSFSIEPG-ESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGYLPQDD--------- 85 (173)
T ss_pred cceeeeEEEECCC-CEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEEECCCC---------
Confidence 4799999999998 999999999999999999999999999999999999998888888889999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++. + .+ +| +|||||+
T Consensus 86 --~~~-------------~------~tv~----------------------~---~l------------LS--~G~~qrv 105 (173)
T cd03246 86 --ELF-------------S------GSIA----------------------E---NI------------LS--GGQRQRL 105 (173)
T ss_pred --ccc-------------c------CcHH----------------------H---HC------------cC--HHHHHHH
Confidence 111 0 0000 0 00 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
+|||||+.+|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+..||++++|++|++
T Consensus 106 ~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 106 GLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999999999999999999999999999999998874 47899999999998866999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=283.86 Aligned_cols=208 Identities=20% Similarity=0.320 Sum_probs=152.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.+++++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (258)
T PRK14241 17 FHAVEDVNLNIEPR-SVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPN 95 (258)
T ss_pred EeeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHHHhcceEEEccccc
Confidence 35799999999998 99999999999999999999999974 79999999998853 345567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
. +. .. ++.+++.... ............+..+.++.++.. .......
T Consensus 96 ~-----------~~------------~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 146 (258)
T PRK14241 96 P-----------FP------------TM------SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPG 146 (258)
T ss_pred c-----------CC------------CC------cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCc
Confidence 1 10 00 1111100000 000000000001111112222221 1233445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+
T Consensus 147 ~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~ 224 (258)
T PRK14241 147 GGLS--GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEA 224 (258)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeccc
Confidence 5677 69999999999999999999999999999999999999999887667899999999999877 99999997
Q ss_pred ---CceEEeecChhHHhhc
Q psy3001 422 ---KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 ---~G~i~~~g~~~~l~~~ 437 (602)
+|++++.+++++++..
T Consensus 225 ~~~~g~i~~~~~~~~~~~~ 243 (258)
T PRK14241 225 TGKPGRLVEIDDTEKIFSN 243 (258)
T ss_pred CCCCceEEecCCHHHHHhC
Confidence 8999999999887654
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-34 Score=277.28 Aligned_cols=196 Identities=23% Similarity=0.359 Sum_probs=145.9
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... .+++.++|++|++.
T Consensus 14 ~~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~---------- 80 (213)
T TIGR01277 14 PMEFDLNVADG-EIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENN---------- 80 (213)
T ss_pred ceeeEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCc----------
Confidence 56999999998 999999999999999999999999999999999999886543 35778999999742
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
++. ..+ +.+++................+..+.++.++...........+| +|||||++|
T Consensus 81 -~~~------------~~t------~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrl~l 139 (213)
T TIGR01277 81 -LFA------------HLT------VRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLS--GGQRQRVAL 139 (213)
T ss_pred -cCC------------CCc------HHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCC--HHHHHHHHH
Confidence 110 001 11110000000000000011111222333344333445556777 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||++.+|+++||||||++||+.+...+.+.+++..+ +.|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999999988643 6899999999999887 99999999999988764
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-34 Score=283.08 Aligned_cols=192 Identities=24% Similarity=0.354 Sum_probs=147.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. .+++.++|++|++.
T Consensus 25 ~~il~~isl~i~~G-e~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~------- 91 (257)
T PRK11247 25 RTVLNQLDLHIPAG-QFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTRLMFQDAR------- 91 (257)
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceEEEecCcc-------
Confidence 34789999999888 999999999999999999999999999999999997653 45778999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++ . ..++.+++...... .. ..+..+.++.++..+........+| ||||||
T Consensus 92 ----l~-------------~-----~~tv~enl~~~~~~---~~---~~~~~~~l~~~gl~~~~~~~~~~LS--gGqkqr 141 (257)
T PRK11247 92 ----LL-------------P-----WKKVIDNVGLGLKG---QW---RDAALQALAAVGLADRANEWPAALS--GGQKQR 141 (257)
T ss_pred ----CC-------------C-----CCcHHHHHHhcccc---hH---HHHHHHHHHHcCChhHhcCChhhCC--HHHHHH
Confidence 11 0 00111111100000 00 1122223334444444455566777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|+++..++.+
T Consensus 142 l~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 142 VALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 999999999999999999999999999999999998863 36899999999999877 9999999999999877654
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-34 Score=283.42 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=153.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCCC--hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 18 ~~~l~~is~~i~~G-e~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 96 (251)
T PRK14244 18 KQILFDINLDIYKR-EVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLLRAKVGMVFQKPN 96 (251)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHHhhhEEEEecCcc
Confidence 45799999999998 9999999999999999999999986 47999999999876543 2356789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~ 346 (602)
++ ..+...+-.. ............... .+..+.++.++..+ .......
T Consensus 97 -----------~~-------------~~tv~~ni~~-~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~~ 148 (251)
T PRK14244 97 -----------PF-------------PKSIYDNVAY-GPKLHGLAKNKKKLD---EIVEKSLTSVGLWEELGDRLKDSAF 148 (251)
T ss_pred -----------cc-------------cCCHHHHHHH-HHHhcCCCCCHHHHH---HHHHHHHHHcCCCchhhhHhhcChh
Confidence 11 0010000000 000000000000111 11112222333321 1233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i 226 (251)
T PRK14244 149 ELS--GGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRI 226 (251)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999887668999999999999987 999999999999
Q ss_pred EeecChhHHhhcc
Q psy3001 426 VEFDSPSVLMKNK 438 (602)
Q Consensus 426 ~~~g~~~~l~~~~ 438 (602)
++.+++++++..+
T Consensus 227 ~~~~~~~~~~~~~ 239 (251)
T PRK14244 227 VEYNTTQEIFKNP 239 (251)
T ss_pred EEeCCHHHHhcCC
Confidence 9999988887653
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-34 Score=284.29 Aligned_cols=208 Identities=20% Similarity=0.329 Sum_probs=151.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 26 ~~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 104 (269)
T PRK14259 26 FEAVKNVFCDIPRG-KVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPN 104 (269)
T ss_pred EEEEcceEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHHHHhhceEEEccCCc
Confidence 34688888888887 9999999999999999999999987 689999999998753 456677889999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchh-HHHHHHHHHHHHHHhhc-ccCCcccccCCc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL-QRFYVATSRQLKRLESV-SRSPIYSHFGET 347 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ 347 (602)
++ ..+ +.+++.... .... ........+.++.+... ............
T Consensus 105 -----------l~-------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 154 (269)
T PRK14259 105 -----------PF-------------PKS------IYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYS 154 (269)
T ss_pred -----------cc-------------hhh------HHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCccc
Confidence 11 001 111000000 0000 00001111112211100 001123344456
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC----
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK---- 422 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~---- 422 (602)
+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++
T Consensus 155 LS--~G~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~ 232 (269)
T PRK14259 155 LS--GGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVE 232 (269)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccc
Confidence 77 69999999999999999999999999999999999999999988667899999999999987 999999996
Q ss_pred -------ceEEeecChhHHhhcc
Q psy3001 423 -------GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 -------G~i~~~g~~~~l~~~~ 438 (602)
|++++.|++++++..+
T Consensus 233 ~~~~g~~g~~~~~~~~~~~~~~~ 255 (269)
T PRK14259 233 GGSGGKVGYLVEFNETKKIFNSP 255 (269)
T ss_pred cccccccceEEEeCCHHHHHhCc
Confidence 6789999998887643
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-34 Score=279.41 Aligned_cols=204 Identities=24% Similarity=0.385 Sum_probs=153.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+||++.
T Consensus 14 ~il~~is~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~~q~~~-------- 82 (237)
T TIGR00968 14 QALDDVNLEVPTG-SLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFVFQHYA-------- 82 (237)
T ss_pred eeeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEEecChh--------
Confidence 4899999999998 9999999999999999999999999999999999999876543 4678999999742
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. ..+. .+++.... ...... .....+..+.++.++..+........+| +||+||
T Consensus 83 ---~~~------------~~t~------~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~G~~qr 138 (237)
T TIGR00968 83 ---LFK------------HLTV------RDNIAFGLEIRKHPK-AKIKARVEELLELVQLEGLGDRYPNQLS--GGQRQR 138 (237)
T ss_pred ---hcc------------CCcH------HHHHHhHHHhcCCCH-HHHHHHHHHHHHHcCCHhHhhCChhhCC--HHHHHH
Confidence 110 0011 11000000 000000 0001111222333333333444445666 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+++|++++|||||++||+.+++.+.+.+++..+ ++|+|++||+++.+.. ||++++|++|++++.++++++
T Consensus 139 l~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 218 (237)
T TIGR00968 139 VALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218 (237)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999988654 6899999999999877 999999999999999998887
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
++.
T Consensus 219 ~~~ 221 (237)
T TIGR00968 219 YDH 221 (237)
T ss_pred HcC
Confidence 654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-34 Score=282.77 Aligned_cols=210 Identities=20% Similarity=0.282 Sum_probs=153.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee-----cCCCChHHH----hhccceecccc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD-----IRTLGLHTL----RSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~-----~~~~~~~~~----~~~i~~v~Q~~ 269 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +...+.... ++.+++++|++
T Consensus 17 ~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (253)
T TIGR02323 17 KGCRDVSFDLYPG-EVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNP 95 (253)
T ss_pred eEeecceEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHHHhhhcceEEEEeCc
Confidence 4699999999998 9999999999999999999999999999999999987 666555432 46799999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETV 348 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l 348 (602)
...+ . ......+++............... ..+..+.++.++.. .........+
T Consensus 96 ~~~~---------~--------------~~~~~~~~i~~~~~~~~~~~~~~~---~~~~~~~l~~l~l~~~~~~~~~~~L 149 (253)
T TIGR02323 96 RDGL---------R--------------MRVSAGANIGERLMAIGARHYGNI---RAAAHDWLEEVEIDPTRIDDLPRAF 149 (253)
T ss_pred cccc---------C--------------ccccHHHHHHHHHHHhcccchHHH---HHHHHHHHHHcCCChhhhhcCchhc
Confidence 2110 0 000000000000000000000001 11222233344433 2344455667
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
| +|||||++|||||+.+|++|||||||++||+.+.+++.+.+++.. .+.|+|++||+++.+.. ||++++|++|++
T Consensus 150 S--gG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i 227 (253)
T TIGR02323 150 S--GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRV 227 (253)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 7 699999999999999999999999999999999999999998863 37899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 228 ~~~~~~~~~~~~ 239 (253)
T TIGR02323 228 VESGLTDQVLDD 239 (253)
T ss_pred EEECCHHHHhcC
Confidence 999998887654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=283.01 Aligned_cols=208 Identities=22% Similarity=0.297 Sum_probs=153.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 25 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 103 (259)
T PRK14274 25 HHALKNINLSIPEN-EVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVELRKNIGMVFQKGN 103 (259)
T ss_pred eeeEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHHHhhceEEEecCCc
Confidence 35799999999998 9999999999999999999999997 3 59999999998863 345567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++... .............+..+.++.++.. .......
T Consensus 104 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~ 153 (259)
T PRK14274 104 -----------PF-------------PQ------SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQA 153 (259)
T ss_pred -----------cc-------------cc------CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 11 00 111110000 0000000000001111112222221 1223445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|+
T Consensus 154 ~~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~ 231 (259)
T PRK14274 154 LSLS--GGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGE 231 (259)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCE
Confidence 5666 69999999999999999999999999999999999999999988667899999999999887 99999999999
Q ss_pred EEeecChhHHhhcc
Q psy3001 425 VVEFDSPSVLMKNK 438 (602)
Q Consensus 425 i~~~g~~~~l~~~~ 438 (602)
+++.|++++++...
T Consensus 232 i~~~g~~~~~~~~~ 245 (259)
T PRK14274 232 LVECNDTNKMFSNP 245 (259)
T ss_pred EEEECCHHHHhhCC
Confidence 99999999886543
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=253.43 Aligned_cols=211 Identities=25% Similarity=0.354 Sum_probs=163.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-------------ChHHHhhcccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-------------GLHTLRSRLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-------------~~~~~~~~i~~v 265 (602)
-.++.||++-++| +++.|+|.|||||||++++|.=+..|+.|.|.++|..++-. ....+|...++|
T Consensus 20 eVLKGvSL~A~~G-dVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ad~~q~~r~Rs~L~mV 98 (256)
T COG4598 20 EVLKGVSLQANAG-DVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMV 98 (256)
T ss_pred hhhcceeeecCCC-CEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeCCHHHHHHHHHHhhHh
Confidence 3689999999988 99999999999999999999999999999999999876421 233577899999
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|+...+ ...+++- ..+ ..++..+ ... ...+..+....+..++.......++
T Consensus 99 FQ~FNLW----sHmtvLe--------------NVi--EaPvhVL-----g~~---k~ea~e~Ae~~L~kVGi~ek~~~YP 150 (256)
T COG4598 99 FQHFNLW----SHMTVLE--------------NVI--EAPVHVL-----GVS---KAEAIERAEKYLAKVGIAEKADAYP 150 (256)
T ss_pred hhhcchh----HHHHHHH--------------HHH--hcchHhh-----cCC---HHHHHHHHHHHHHHhCchhhhhcCc
Confidence 9973322 1111110 000 0011000 000 1122233344455666666566778
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
..+| |||+||++|||||+.+|+++++|||||+|||+-..++.+.++++. +|+|.++|||.+.+.++ +.++++|++|
T Consensus 151 ~~LS--GGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G 228 (256)
T COG4598 151 AHLS--GGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQG 228 (256)
T ss_pred cccC--chHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecc
Confidence 8888 599999999999999999999999999999999999999999875 58999999999999999 8999999999
Q ss_pred eEEeecChhHHhhcchh
Q psy3001 424 LVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~ 440 (602)
.|-+.|+|++++.++..
T Consensus 229 ~iEE~G~P~qvf~nP~S 245 (256)
T COG4598 229 KIEEEGPPEQVFGNPQS 245 (256)
T ss_pred eecccCChHHHhcCCCC
Confidence 99999999999987644
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=283.74 Aligned_cols=209 Identities=25% Similarity=0.374 Sum_probs=156.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++...+
T Consensus 25 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~- 102 (268)
T PRK10419 25 QTVLNNVSLSLKSG-ETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAV- 102 (268)
T ss_pred eeeEeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhHHHHHHhcEEEEEcChhhcc-
Confidence 45799999999998 99999999999999999999999999999999999998876553 46789999999742111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
+ . ..++.+++.... ..... ......+..+.++.++.. .........+|
T Consensus 103 --------~-------------~-----~~t~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS-- 153 (268)
T PRK10419 103 --------N-------------P-----RKTVREIIREPLRHLLSLD-KAERLARASEMLRAVDLDDSVLDKRPPQLS-- 153 (268)
T ss_pred --------C-------------C-----CCCHHHHHHHHHHhhccCC-HHHHHHHHHHHHHHcCCChhHhhCCCccCC--
Confidence 0 0 000000000000 00000 001111122223333333 23444556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|++||+++.+.. ||++++|++|++++.
T Consensus 154 ~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~ 233 (268)
T PRK10419 154 GGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233 (268)
T ss_pred hHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeee
Confidence 6999999999999999999999999999999999999999988653 7899999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++...
T Consensus 234 g~~~~~~~~ 242 (268)
T PRK10419 234 QPVGDKLTF 242 (268)
T ss_pred CChhhccCC
Confidence 999887654
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.33 Aligned_cols=208 Identities=21% Similarity=0.306 Sum_probs=153.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc---cCC--CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI---IEP--ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~---~~~--~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+ ++| ++|+|.++|.++... +...+++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 94 (250)
T PRK14245 16 FHALKGISMEIEEK-SVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPN 94 (250)
T ss_pred EeEEeeeeEEEeCC-CEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHHHhhheEEEecCCc
Confidence 34799999999998 99999999999999999999997 455 589999999998653 34567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++.... ............+..+.++.++.. .......
T Consensus 95 -----------~~-------------~~------tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 144 (250)
T PRK14245 95 -----------PF-------------PK------SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESA 144 (250)
T ss_pred -----------cC-------------cc------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCc
Confidence 11 00 0111000000 000000000001111222233322 1234445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++|+
T Consensus 145 ~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~ 222 (250)
T PRK14245 145 FALS--GGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGE 222 (250)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667999999999999977 99999999999
Q ss_pred EEeecChhHHhhcc
Q psy3001 425 VVEFDSPSVLMKNK 438 (602)
Q Consensus 425 i~~~g~~~~l~~~~ 438 (602)
+++.|+++++.+..
T Consensus 223 ~~~~~~~~~~~~~~ 236 (250)
T PRK14245 223 MVEYDDTKKIFTNP 236 (250)
T ss_pred EEEECCHHHHhcCC
Confidence 99999999887653
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=281.23 Aligned_cols=206 Identities=21% Similarity=0.314 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ....+++.++|++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14256 17 NHAVKDVSMDFPEN-SVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPN 95 (252)
T ss_pred eeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChHHhhccEEEEecCCC
Confidence 34799999999998 9999999999999999999999986 4 689999999988643 34567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc---c-chhHHHHHHHHHHHHHHhhcccC----Cccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---C-SNLQRFYVATSRQLKRLESVSRS----PIYS 342 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~l~~~~~~----~~~~ 342 (602)
++. ..+ +.+++.... . ....... .+..+.++.++.. ....
T Consensus 96 -----------~~~------------~~t------v~enl~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~ 143 (252)
T PRK14256 96 -----------PFP------------AMS------IYDNVIAGYKLNGRVNRSEAD---EIVESSLKRVALWDEVKDRLK 143 (252)
T ss_pred -----------CCC------------cCc------HHHHHHhHHHhcCCCCHHHHH---HHHHHHHHHcCCchhhhHHhh
Confidence 110 001 111100000 0 0000000 1111222222221 1223
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+
T Consensus 144 ~~~~~LS--~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~ 221 (252)
T PRK14256 144 SNAMELS--GGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFY 221 (252)
T ss_pred CCcCcCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEE
Confidence 3455677 69999999999999999999999999999999999999999988767899999999999977 99999999
Q ss_pred CceEEeecChhHHhhcc
Q psy3001 422 KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.++++++...+
T Consensus 222 ~G~i~~~~~~~~~~~~~ 238 (252)
T PRK14256 222 MGDLVECGETKKIFTTP 238 (252)
T ss_pred CCEEEEeCCHHHHHhCC
Confidence 99999999998886553
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=283.46 Aligned_cols=211 Identities=23% Similarity=0.323 Sum_probs=156.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC--------CceEEECCeecCCCChHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--------DGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~--------~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++...+...+++.++|++|++
T Consensus 14 ~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~v~q~~ 92 (272)
T PRK13547 14 RAILRDLSLRIEPG-RVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAA 92 (272)
T ss_pred EeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHHHHhhcEEecccC
Confidence 45899999999998 999999999999999999999999998 999999999998877778888899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVT 349 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls 349 (602)
...+ ..+...+-................ ....+..+.++.++...........+|
T Consensus 93 ~~~~-----------------------~~tv~e~l~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~LS 147 (272)
T PRK13547 93 QPAF-----------------------AFSAREIVLLGRYPHARRAGALTH--RDGEIAWQALALAGATALVGRDVTTLS 147 (272)
T ss_pred CCCC-----------------------CCcHHHHHhhcccccccccccCCH--HHHHHHHHHHHHcCcHhhhcCCcccCC
Confidence 2111 000000000000000000000000 001112222333444444445556677
Q ss_pred CChhhHHHHHHHHHHh---------hCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeE
Q psy3001 350 GNVGQRQLICLARALL---------RKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRV 417 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i 417 (602)
+|||||++|||||+ .+|++|||||||++||+.+.+.+.+.++++.+ ++|+|+|||+++.+.. ||++
T Consensus 148 --gG~~qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i 225 (272)
T PRK13547 148 --GGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRI 225 (272)
T ss_pred --HHHHHHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEE
Confidence 69999999999999 59999999999999999999999999988643 6899999999999986 9999
Q ss_pred EEEeCceEEeecChhHHhh
Q psy3001 418 LVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 418 ~~l~~G~i~~~g~~~~l~~ 436 (602)
++|++|++++.++++++..
T Consensus 226 ~~l~~G~i~~~g~~~~~~~ 244 (272)
T PRK13547 226 AMLADGAIVAHGAPADVLT 244 (272)
T ss_pred EEEECCeEEEecCHHHHcC
Confidence 9999999999998877643
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-34 Score=282.95 Aligned_cols=196 Identities=21% Similarity=0.291 Sum_probs=145.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +..++|++|++.
T Consensus 14 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v~q~~~------- 80 (255)
T PRK11248 14 KPALEDINLTLESG-ELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVVFQNEG------- 80 (255)
T ss_pred eeeEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEEeCCCc-------
Confidence 34799999999998 99999999999999999999999999999999999987642 235899999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++.... ...... .....+..+.++.++..+........+| |||||
T Consensus 81 ----~~~------------~~------tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~q 135 (255)
T PRK11248 81 ----LLP------------WR------NVQDNVAFGLQLAGVEK-MQRLEIAHQMLKKVGLEGAEKRYIWQLS--GGQRQ 135 (255)
T ss_pred ----cCC------------CC------cHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCChhHhhCChhhCC--HHHHH
Confidence 110 00 1111100000 000000 0011122233334444444445566777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEEeecCh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVVEFDSP 431 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~~~g~~ 431 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|++++.++.
T Consensus 136 rl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 136 RVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 9999999999999999999999999999999999998863 37999999999999987 99999998 5999887654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-33 Score=284.30 Aligned_cols=207 Identities=20% Similarity=0.324 Sum_probs=150.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++... +...+++.++|++|++.
T Consensus 34 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 112 (268)
T PRK14248 34 KRAVNDISMDIEKH-AVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVNLRREIGMVFQKPN 112 (268)
T ss_pred ceeeeceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHHHhccEEEEecCCc
Confidence 34688888888887 9999999999999999999999864 7999999999988643 34467789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++. . ++.+++.... ...............+.+...+.. .......
T Consensus 113 -----------~~~-------------~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 162 (268)
T PRK14248 113 -----------PFP-------------K------SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSA 162 (268)
T ss_pred -----------cCc-------------c------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCc
Confidence 110 0 0111000000 000000000000111111122211 1123345
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.++++.+++|||++||+++.+.. ||++++|++|+
T Consensus 163 ~~LS--gGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~ 240 (268)
T PRK14248 163 LSLS--GGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGD 240 (268)
T ss_pred ccCC--HHHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667899999999999877 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.++++++...
T Consensus 241 i~~~~~~~~~~~~ 253 (268)
T PRK14248 241 LVEYDQTEQIFTS 253 (268)
T ss_pred EEEeCCHHHHHhC
Confidence 9999998887654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-33 Score=281.73 Aligned_cols=207 Identities=23% Similarity=0.314 Sum_probs=152.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|+++.. .+...+++.+++++|++.
T Consensus 17 ~~~l~~~sl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14251 17 YEALHGISLDFEEK-ELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPT 95 (251)
T ss_pred eeeeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHHhhccEEEEecCCc
Confidence 34799999999998 9999999999999999999999997 479999999998854 334567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++ .. ++.+++.... ............+..+.++.++.. .......
T Consensus 96 -----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~ 145 (251)
T PRK14251 96 -----------PF-------------PF------SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNA 145 (251)
T ss_pred -----------cC-------------CC------cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccCh
Confidence 11 00 1111100000 000000000001111112222221 1123344
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+++|+++||||||++||+.+...+.+.+++..++.|+|+|||+++.+.. ||++++|++|+
T Consensus 146 ~~LS--~Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~ 223 (251)
T PRK14251 146 QAFS--GGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGD 223 (251)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCE
Confidence 5666 69999999999999999999999999999999999999999987667899999999999887 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.++++++...
T Consensus 224 i~~~~~~~~~~~~ 236 (251)
T PRK14251 224 LIEAGPTEEMFIA 236 (251)
T ss_pred EEEeCCHHHHHhC
Confidence 9999998887654
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-34 Score=280.56 Aligned_cols=196 Identities=23% Similarity=0.351 Sum_probs=144.8
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++++|++.
T Consensus 1 l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~---------- 64 (230)
T TIGR01184 1 LKGVNLTIQQG-EFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYS---------- 64 (230)
T ss_pred CCceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcc----------
Confidence 47899999998 9999999999999999999999999999999999998876443 2379999732
Q ss_pred eeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. . .++.+++... ....... .....+..+.++.++...........+| ||||||
T Consensus 65 -l~~------------~------~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gG~~qr 122 (230)
T TIGR01184 65 -LLP------------W------LTVRENIALAVDRVLPDLSK-SERRAIVEEHIALVGLTEAADKRPGQLS--GGMKQR 122 (230)
T ss_pred -cCC------------C------CCHHHHHHHHHHhcccCCCH-HHHHHHHHHHHHHcCCHHHHcCChhhCC--HHHHHH
Confidence 110 0 0111110000 0000000 0001111222333333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||++++|++|++++.|+...+
T Consensus 123 v~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 202 (230)
T TIGR01184 123 VAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202 (230)
T ss_pred HHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceec
Confidence 999999999999999999999999999999999998864 36899999999999887 999999999999988876554
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-33 Score=279.93 Aligned_cols=208 Identities=21% Similarity=0.207 Sum_probs=149.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...+.... +..++|++|++..
T Consensus 13 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~--- 88 (243)
T TIGR01978 13 KEILKGVNLTVKKG-EIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGLFLAFQYPEE--- 88 (243)
T ss_pred EEEEeccceEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccceEeeeccccc---
Confidence 45799999999998 999999999999999999999995 7999999999999987776554 4458999997431
Q ss_pred hccCCceeEeeecccceeeeccccceeecccc-ccccc--ccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLII--TPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~l 348 (602)
+.. .+...+-.. ..... ... ........ .+..+.++.++.. ........ .+
T Consensus 89 --------~~~------------~t~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~L 145 (243)
T TIGR01978 89 --------IPG------------VSNLEFLRSALNARRSARGEEPLDLLDFL---KLLKAKLALLGMDEEFLNRSVNEGF 145 (243)
T ss_pred --------cCC------------cCHHHHHHHHHHHhhcccccccccHHHHH---HHHHHHHHHcCCchhhcccccccCc
Confidence 100 000000000 00000 000 00000111 1122222333332 12222222 36
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i 425 (602)
| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|||++||+++.+.. ||++++|++|++
T Consensus 146 S--~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i 223 (243)
T TIGR01978 146 S--GGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRI 223 (243)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEE
Confidence 6 699999999999999999999999999999999999999998875 46899999999999976 799999999999
Q ss_pred EeecChhHH
Q psy3001 426 VEFDSPSVL 434 (602)
Q Consensus 426 ~~~g~~~~l 434 (602)
++.|+++++
T Consensus 224 ~~~g~~~~~ 232 (243)
T TIGR01978 224 VKSGDVELA 232 (243)
T ss_pred EEecCHHHh
Confidence 998887754
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=280.26 Aligned_cols=206 Identities=23% Similarity=0.361 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 17 ~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~- 94 (250)
T PRK14240 17 QALKKINLDIEEN-QVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPN- 94 (250)
T ss_pred eeeecceEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHHHhccEEEEecCCc-
Confidence 4799999999998 99999999999999999999999863 69999999998864 345567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccc-cccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-LIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+.. +.+.. ....... ..........+.++ ..... ........
T Consensus 95 ----------~~~-------------~t~~--~ni~~~~~~~~~~-~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14240 95 ----------PFP-------------MSIY--DNVAYGPRTHGIK-DKKKLDEIVEKSLK---GAALWDEVKDRLKKSAL 145 (250)
T ss_pred ----------cCc-------------ccHH--HHHHHHHHhcCCC-CHHHHHHHHHHHHH---HcCCchhhHHHHhcCCC
Confidence 110 0000 00000 0000000 00001111111122 21111 12234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|+|||||++||+.++..+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i 223 (250)
T PRK14240 146 GLS--GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEI 223 (250)
T ss_pred CCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999988667899999999999887 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.++++++...
T Consensus 224 ~~~~~~~~~~~~ 235 (250)
T PRK14240 224 VEFGDTVDLFTN 235 (250)
T ss_pred EEeCCHHHHHhC
Confidence 999998887654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=283.16 Aligned_cols=210 Identities=20% Similarity=0.295 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .....+++.++|++|++.
T Consensus 38 ~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 115 (271)
T PRK14238 38 HALKNINLDIHEN-EVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVEELRTNVGMVFQKPN- 115 (271)
T ss_pred ceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHHHHhhhEEEEecCCc-
Confidence 4688888888887 9999999999999999999999997 699999999998853 345567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhh-cccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-VSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~lsg 350 (602)
++.. +.. +.+....................+.++.+.. .............+|
T Consensus 116 ----------~~~~-------------tv~--eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LS- 169 (271)
T PRK14238 116 ----------PFPK-------------SIY--DNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLS- 169 (271)
T ss_pred ----------cccc-------------cHH--HHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCC-
Confidence 2100 100 0000000000000000000111111111100 001112234455677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+|||||++|||||+.+|++|||||||++||+.+..++.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 170 -gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 170 -GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 69999999999999999999999999999999999999999988667999999999999887 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
+++++...
T Consensus 249 ~~~~~~~~ 256 (271)
T PRK14238 249 DTDKIFSN 256 (271)
T ss_pred CHHHHHcC
Confidence 99888654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=281.73 Aligned_cols=207 Identities=20% Similarity=0.320 Sum_probs=152.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 33 ~~il~~vsl~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~ 111 (267)
T PRK14237 33 KEAIKGIDMQFEKN-KITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINVYEMRKHIGMVFQRPN 111 (267)
T ss_pred eeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCChHHHhcceEEEecCCc
Confidence 35788888888887 9999999999999999999999996 589999999998854 335567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~ 345 (602)
++. . ++.+++.... ............+..+.++.++.. .......
T Consensus 112 -----------~~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~ 161 (267)
T PRK14237 112 -----------PFA-------------K------SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSA 161 (267)
T ss_pred -----------ccc-------------c------cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCc
Confidence 110 0 1111100000 000000000001111112222221 1234445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
..+| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++++|++|+
T Consensus 162 ~~LS--~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~ 239 (267)
T PRK14237 162 LTLS--GGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGD 239 (267)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCE
Confidence 5677 69999999999999999999999999999999999999999988667899999999999877 99999999999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.|+++++...
T Consensus 240 i~~~g~~~~~~~~ 252 (267)
T PRK14237 240 LIEYDKTRNIFTN 252 (267)
T ss_pred EEEeCCHHHHhcC
Confidence 9999999888654
|
|
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=279.28 Aligned_cols=201 Identities=19% Similarity=0.278 Sum_probs=153.1
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|++++ +|+|.++|.++...+...+++.++|++|++...+
T Consensus 11 ~l~~vsl~i~~G-ei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~------ 82 (248)
T PRK03695 11 RLGPLSAEVRAG-EILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPF------ 82 (248)
T ss_pred eecceEEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCHHHHhhheEEecccCccCC------
Confidence 689999999998 99999999999999999999999864 9999999999988888788888999999742111
Q ss_pred ceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
..+ +.+++... .......... +..+.++.++...........+| +|||||
T Consensus 83 -----------------~~t------v~~nl~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 134 (248)
T PRK03695 83 -----------------AMP------VFQYLTLHQPDKTRTEAVAS---ALNEVAEALGLDDKLGRSVNQLS--GGEWQR 134 (248)
T ss_pred -----------------Ccc------HHHHHHhcCccCCCcHHHHH---HHHHHHHHcCCHhHhcCCcccCC--HHHHHH
Confidence 000 00000000 0000000111 11222333333333455566677 699999
Q ss_pred HHHHHHHhh-------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLR-------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
++|||||+. +|++|||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.
T Consensus 135 v~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~ 214 (248)
T PRK03695 135 VRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLAS 214 (248)
T ss_pred HHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999998 679999999999999999999999998875 47899999999998877 999999999999999
Q ss_pred cChhHHhh
Q psy3001 429 DSPSVLMK 436 (602)
Q Consensus 429 g~~~~l~~ 436 (602)
|+++++..
T Consensus 215 g~~~~~~~ 222 (248)
T PRK03695 215 GRRDEVLT 222 (248)
T ss_pred CCHHHHhC
Confidence 98877643
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-33 Score=279.80 Aligned_cols=204 Identities=20% Similarity=0.299 Sum_probs=152.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 17 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 95 (251)
T PRK14270 17 KQALNDINLPIYEN-KITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPN 95 (251)
T ss_pred eeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHHHHhheEEEecCCC
Confidence 35799999999998 99999999999999999999999875 799999999998643 33466888999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccc---hhHHHHHHHHHHHHHHhhcccC----Cccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCS---NLQRFYVATSRQLKRLESVSRS----PIYS 342 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~~~~~~~~~~~~~~l~~~~~~----~~~~ 342 (602)
++ ..+ +.+++... ... ..........+.++ ..+.. ....
T Consensus 96 -----------~~-------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~ 142 (251)
T PRK14270 96 -----------PF-------------PMS------IYDNVAYGPRIHGIKDKKELDKIVEWALK---KAALWDEVKDDLK 142 (251)
T ss_pred -----------cC-------------CCc------HHHHHHhHHHhcCCCcHHHHHHHHHHHHH---HcCCchhhhhHhh
Confidence 11 000 10100000 000 00000111111222 22211 1233
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....+| +|||||++||||++.+|++|||||||++||+.+...+.+.|++..++.|+|++||+++.+.. ||++++|+
T Consensus 143 ~~~~~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~ 220 (251)
T PRK14270 143 KSALKLS--GGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFL 220 (251)
T ss_pred CCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEE
Confidence 3455666 69999999999999999999999999999999999999999987667899999999999887 99999999
Q ss_pred CceEEeecChhHHhhc
Q psy3001 422 KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~~ 437 (602)
+|++++.++++++...
T Consensus 221 ~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 221 MGDLIEFNKTEKIFLE 236 (251)
T ss_pred CCeEEEeCCHHHHhcC
Confidence 9999999999888654
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-33 Score=274.65 Aligned_cols=198 Identities=29% Similarity=0.470 Sum_probs=144.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++.
T Consensus 17 ~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 88 (220)
T cd03245 17 IPALDNVSLTIRAG-EKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVT------- 88 (220)
T ss_pred cccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCc-------
Confidence 35799999999998 9999999999999999999999999999999999999887777777889999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++.. + +.+++... .............. .+ +.+... +...........+| +
T Consensus 89 ----~~~~-------------t------v~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LS--g 143 (220)
T cd03245 89 ----LFYG-------------T------LRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLS--G 143 (220)
T ss_pred ----cccc-------------h------HHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCC--H
Confidence 1100 0 00000000 00000000000000 00 000000 00001122234566 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+++++++|++++.
T Consensus 144 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 144 GQRQAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeec
Confidence 9999999999999999999999999999999999999999987656899999999998745999999999999764
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=280.89 Aligned_cols=206 Identities=22% Similarity=0.323 Sum_probs=151.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++... ....+++.++|++|++.
T Consensus 19 ~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 96 (252)
T PRK14239 19 KALNSVSLDFYPN-EITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPN- 96 (252)
T ss_pred eeeeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHhhhhcEEEEecCCc-
Confidence 4799999999998 9999999999999999999999953 6 599999999988643 34467788999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++... .............+..+.++.++.. ........
T Consensus 97 ----------~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 147 (252)
T PRK14239 97 ----------PF-------------PM------SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSAL 147 (252)
T ss_pred ----------cC-------------cC------cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcc
Confidence 11 00 111110000 0000000000001111111222211 11233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 148 ~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14239 148 GLS--GGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDL 225 (252)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999987667899999999999877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|++++++..
T Consensus 226 ~~~g~~~~~~~~ 237 (252)
T PRK14239 226 IEYNDTKQMFMN 237 (252)
T ss_pred EEeCCHHHHHhC
Confidence 999999888664
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-33 Score=279.90 Aligned_cols=212 Identities=22% Similarity=0.320 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|. +|+|.++|.++.. .....+++.++|++|++.
T Consensus 17 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 95 (252)
T PRK14272 17 KQAVKNVNLDVQRG-TVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMRRRVGMVFQKPN 95 (252)
T ss_pred EEeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHHhhceeEEEeccCc
Confidence 45799999999998 999999999999999999999999874 8999999998864 334567888999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVT 349 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~ls 349 (602)
++. ..+.. +.+............+.......+.++.+... ............+|
T Consensus 96 -----------~~~------------~~t~~--enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS 150 (252)
T PRK14272 96 -----------PFP------------TMSVF--DNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLS 150 (252)
T ss_pred -----------cCc------------CCCHH--HHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCC
Confidence 110 00110 00000000000000000001111111111000 00011233345566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 151 --~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 228 (252)
T PRK14272 151 --GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEH 228 (252)
T ss_pred --HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEe
Confidence 69999999999999999999999999999999999999999987667999999999999987 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|++++++..
T Consensus 229 ~~~~~~~~~ 237 (252)
T PRK14272 229 GPTDQLFTN 237 (252)
T ss_pred CCHHHHHhC
Confidence 999888654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-34 Score=278.92 Aligned_cols=197 Identities=24% Similarity=0.307 Sum_probs=144.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++|+.
T Consensus 34 ~~il~~vs~~i~~G-e~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~-------- 103 (236)
T cd03267 34 VEALKGISFTIEKG-EIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQK-------- 103 (236)
T ss_pred eeeeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCc--------
Confidence 45899999999998 99999999999999999999999999999999999886543 345677899997431
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc--cc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--PF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+.++. . .++.+++.. .. ......... +....++.++..+........+| +||
T Consensus 104 --~~~~~------------~------~tv~e~l~~~~~~~~~~~~~~~~---~~~~~l~~~gl~~~~~~~~~~LS--~G~ 158 (236)
T cd03267 104 --TQLWW------------D------LPVIDSFYLLAAIYDLPPARFKK---RLDELSELLDLEELLDTPVRQLS--LGQ 158 (236)
T ss_pred --cccCC------------C------CcHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCChhHhcCChhhCC--HHH
Confidence 11110 0 001110000 00 000001111 11122223333333344445677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||++|||||+.+|++|||||||++||+.+..++.+.|+++.+ ++|+|++||+++++.. ||++++|++|++++.|
T Consensus 159 ~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 159 RMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998743 6899999999999887 9999999999997653
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=278.94 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=151.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 16 ~~~l~~i~~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14262 16 KKAVKNVTMKIFKN-QITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPT 94 (250)
T ss_pred ceeEeeeeEeecCC-CEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHHhhhhEEEEecCCc
Confidence 34799999999998 99999999999999999999999984 899999999988653 23456789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+.. +.+... ........... ...+..+.++.++.. ........
T Consensus 95 -----------~~-------------~~tv~--e~l~~~-~~~~~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~ 145 (250)
T PRK14262 95 -----------PF-------------PMSIY--DNVAFG-PRIHGVKSKHK--LDRIVEESLKKAALWDEVKSELNKPGT 145 (250)
T ss_pred -----------cC-------------cccHH--HHHHHH-HHHcCCCcHHH--HHHHHHHHHHHcCCCchhHHHHhCChh
Confidence 11 00000 000000 00000000000 000111111122221 11334455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|+|||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i 223 (250)
T PRK14262 146 RLS--GGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGEL 223 (250)
T ss_pred hcC--HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999987667899999999998877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
+..|+++++.+.
T Consensus 224 ~~~g~~~~~~~~ 235 (250)
T PRK14262 224 IEYGPTREIVER 235 (250)
T ss_pred EEecCHHHHHhC
Confidence 999998887654
|
|
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-33 Score=259.18 Aligned_cols=146 Identities=34% Similarity=0.558 Sum_probs=129.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|++|++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. ..++.++|++|
T Consensus 14 ~vl~~i~~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q---------- 82 (163)
T cd03216 14 KALDGVSLSVRRG-EVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQ---------- 82 (163)
T ss_pred EEEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEe----------
Confidence 5899999999998 99999999999999999999999999999999999988766543 23445554441
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+| +|||||
T Consensus 83 ----------------------------------------------------------------------LS--~G~~qr 90 (163)
T cd03216 83 ----------------------------------------------------------------------LS--VGERQM 90 (163)
T ss_pred ----------------------------------------------------------------------cC--HHHHHH
Confidence 44 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
++||||++.+|++++|||||++||+.+.+.+.+.++++. ++.|+|++||+++.+.. ||++++|++|++++
T Consensus 91 l~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 91 VEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred HHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999999999999998874 47899999999999877 99999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=283.29 Aligned_cols=203 Identities=23% Similarity=0.319 Sum_probs=149.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+.+ |++|+|.++|.++... ....+++.++|++|++.
T Consensus 53 ~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 130 (286)
T PRK14275 53 EAVKKVNADILSK-YVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKPN- 130 (286)
T ss_pred EEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchHHhhhcEEEECCCCC-
Confidence 4677777777777 9999999999999999999999864 4999999999988643 23457889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc----cchhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++ .. ++.+++.... ............+.++ .++. ......
T Consensus 131 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 178 (286)
T PRK14275 131 ----------PF-------------PK------SIFDNIAYGPRLHGINDKKQLEEIVEKSLR---KAALWDEVSDRLDK 178 (286)
T ss_pred ----------CC-------------cc------CHHHHHHhHHHhcCCCcHHHHHHHHHHHHH---HhCCccchhhHhhC
Confidence 11 00 1111100000 0000000111111122 2111 112234
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 179 ~~~~LS--gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~ 256 (286)
T PRK14275 179 NALGLS--GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYE 256 (286)
T ss_pred ChhhCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455666 69999999999999999999999999999999999999999987667899999999999987 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.|++.++...
T Consensus 257 G~i~~~g~~~~~~~~ 271 (286)
T PRK14275 257 GVLVEHAPTAQLFTN 271 (286)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999998887654
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=279.96 Aligned_cols=205 Identities=20% Similarity=0.307 Sum_probs=151.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ...++.++|++|++...|.
T Consensus 17 ~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~~i~~v~q~~~~~~~ 93 (254)
T PRK10418 17 PLVHGVSLTLQRG-RVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGRKIATIMQNPRSAFN 93 (254)
T ss_pred ceecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccceEEEEecCCccccC
Confidence 4799999999998 99999999999999999999999999 999999999988632 2234679999998431110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC---cccccCCcCCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP---IYSHFGETVTGN 351 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~~~lsgs 351 (602)
+. .+.. +.+...... .. ... ...+..+.++.++..+ ........+|
T Consensus 94 -----~~----------------~~~~--~~~~~~~~~-~~--~~~---~~~~~~~~l~~~~l~~~~~~~~~~~~~LS-- 142 (254)
T PRK10418 94 -----PL----------------HTMH--THARETCLA-LG--KPA---DDATLTAALEAVGLENAARVLKLYPFEMS-- 142 (254)
T ss_pred -----cc----------------ccHH--HHHHHHHHH-cC--CCh---HHHHHHHHHHHcCCCChhhhhhcCCcccC--
Confidence 00 0000 000000000 00 000 0111222233333332 2344556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||++||+++.+.. ||++++|++|++++.
T Consensus 143 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~ 222 (254)
T PRK10418 143 GGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQ 222 (254)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 6999999999999999999999999999999999999999988643 6899999999999977 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
++++++...
T Consensus 223 ~~~~~~~~~ 231 (254)
T PRK10418 223 GDVETLFNA 231 (254)
T ss_pred cCHHHHhhC
Confidence 998888654
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=273.21 Aligned_cols=192 Identities=21% Similarity=0.329 Sum_probs=142.9
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC----ChHHHhhccceecccchhhhhhccC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL----GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~----~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
|+||++.+ ++++|+|+||||||||+++|+|+++|++|+|.++|.++... +...+++.++|++|++.
T Consensus 16 ~vsl~i~~--e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~-------- 85 (214)
T cd03297 16 KIDFDLNE--EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYA-------- 85 (214)
T ss_pred CceEEEcc--eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEEecCCc--------
Confidence 99999987 99999999999999999999999999999999999987643 23356788999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. . .++.+++......... .....+..+.++.++...........+| +|||||+
T Consensus 86 ---~~~------------~------~t~~~~l~~~~~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv 140 (214)
T cd03297 86 ---LFP------------H------LNVRENLAFGLKRKRN--REDRISVDELLDLLGLDHLLNRYPAQLS--GGEKQRV 140 (214)
T ss_pred ---cCC------------C------CCHHHHHHHHHhhCCH--HHHHHHHHHHHHHcCCHhHhhcCcccCC--HHHHHHH
Confidence 110 0 0111110000000000 0011112223334444333445556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+||||++.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 141 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999988643 7899999999999977 9999999999998654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-33 Score=273.41 Aligned_cols=199 Identities=26% Similarity=0.332 Sum_probs=149.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++..+++.++|++|++.
T Consensus 20 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~------- 91 (225)
T PRK10247 20 AKILNNISFSLRAG-EFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPT------- 91 (225)
T ss_pred ceeeeccEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccc-------
Confidence 45899999999998 9999999999999999999999999999999999999988888778889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
++ .. ++.+++... ........ ..+..+.++.++.. .........+| +||+
T Consensus 92 ----l~-------------~~------tv~enl~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--~G~~ 143 (225)
T PRK10247 92 ----LF-------------GD------TVYDNLIFPWQIRNQQPD---PAIFLDDLERFALPDTILTKNIAELS--GGEK 143 (225)
T ss_pred ----cc-------------cc------cHHHHHHhHHhhcCCChH---HHHHHHHHHHcCCChHHhcCCcccCC--HHHH
Confidence 11 10 111110000 00000000 01112233333332 23345556677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeecccccccCCeEEEEe-CceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLD-KGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~-~G~i~~~g~~~ 432 (602)
||++|||||+.+|+++||||||++||+.+...+.+.++++. .+.|+|++||+++.+..||++++|+ ++..++.|+|+
T Consensus 144 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 144 QRISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 99999999999999999999999999999999999998864 3789999999999987799999995 55556666653
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=278.23 Aligned_cols=203 Identities=21% Similarity=0.323 Sum_probs=152.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCCC--ChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|++|++.
T Consensus 18 ~il~~~s~~i~~G-~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~- 95 (251)
T PRK14249 18 QVLKNINMDFPER-QITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPN- 95 (251)
T ss_pred eEecceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHHhhceEEEEecCCc-
Confidence 4799999999998 999999999999999999999999997 69999999988643 34567889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-c---cchhHHHHHHHHHHHHHHhhccc----CCcccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F---CSNLQRFYVATSRQLKRLESVSR----SPIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~ 343 (602)
++. .+ +.+++... . ..............++ ..+. ......
T Consensus 96 ----------~~~-------------~t------v~enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~ 143 (251)
T PRK14249 96 ----------PFP-------------KS------IFDNVAFGPRMLGTTAQSRLDEVVEKSLR---QAALWDEVKDNLHK 143 (251)
T ss_pred ----------cCc-------------Cc------HHHHHhhHHHhcCCChhhHHHHHHHHHHH---HhCCchhhhhHhhC
Confidence 110 01 11100000 0 0000000011111111 1111 112344
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+..++.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 144 ~~~~LS--~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~ 221 (251)
T PRK14249 144 SGLALS--GGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLT 221 (251)
T ss_pred CcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeC
Confidence 555677 69999999999999999999999999999999999999999887667999999999999988 899999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 222 G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 222 GDLVEYGRTGEIFSR 236 (251)
T ss_pred CeEEEeCCHHHHHhC
Confidence 999999998887654
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=277.55 Aligned_cols=206 Identities=26% Similarity=0.337 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC------eecCCCChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG------VDIRTLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g------~~~~~~~~~~~~~~i~~v~Q~~~~ 271 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| .++...+...+++.++|++|++.
T Consensus 23 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~q~~~- 100 (257)
T PRK14246 23 KAILKDITIKIPNN-SIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIKLRKEVGMVFQQPN- 100 (257)
T ss_pred ceeEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHHHhcceEEEccCCc-
Confidence 45899999999998 99999999999999999999999999987666655 56666666778899999999743
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccC----Ccccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRS----PIYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~ 343 (602)
++. ..+ +.+++... ........... ..+.++.++.. .....
T Consensus 101 ----------~~~------------~~t------v~~nl~~~~~~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~ 149 (257)
T PRK14246 101 ----------PFP------------HLS------IYDNIAYPLKSHGIKEKREIKKI---VEECLRKVGLWKEVYDRLNS 149 (257)
T ss_pred ----------cCC------------CCc------HHHHHHHHHHhcCCCCHHHHHHH---HHHHHHHcCCCccchhhhcC
Confidence 110 001 11110000 00000011111 11222222222 12233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++||||++.+|++++|||||++||+.++.++.+.++++.+++|+|++||+++.+.. ||++++|++
T Consensus 150 ~~~~LS--~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~ 227 (257)
T PRK14246 150 PASQLS--GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYN 227 (257)
T ss_pred CcccCC--HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEEC
Confidence 445566 69999999999999999999999999999999999999999987667999999999999976 999999999
Q ss_pred ceEEeecChhHHhhcc
Q psy3001 423 GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~ 438 (602)
|++++.|+++++...+
T Consensus 228 g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 228 GELVEWGSSNEIFTSP 243 (257)
T ss_pred CEEEEECCHHHHHhCC
Confidence 9999999998887653
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-33 Score=275.60 Aligned_cols=205 Identities=20% Similarity=0.305 Sum_probs=153.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... ....+++.++|++|++.
T Consensus 21 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 99 (261)
T PRK14263 21 FMAVRDSHVPIRKN-EITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPN 99 (261)
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHhhhhceEEEecCCc
Confidence 46899999999998 99999999999999999999999986 799999999988643 34467788999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC----cccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP----IYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~ 345 (602)
++ .. ++.+++.... ....... ...+..+.++..+... ......
T Consensus 100 -----------~~-------------~~------tv~enl~~~~~~~~~~~~--~~~~~~~~l~~~~l~~~i~~~~~~~~ 147 (261)
T PRK14263 100 -----------PF-------------SM------SIFDNVAFGLRLNRYKGD--LGDRVKHALQGAALWDEVKDKLKVSG 147 (261)
T ss_pred -----------cc-------------cc------cHHHHHHHHHhhcCchHH--HHHHHHHHHHHcCCchhhhhhhhCCc
Confidence 11 00 1111100000 0000000 0011122222222211 122334
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +||+||++|||||+++|++|||||||++||+.+...+.+.++++.+++|+|++||+++.+.. ||++++|+
T Consensus 148 ~~LS--~G~~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~ 225 (261)
T PRK14263 148 LSLS--GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDI 225 (261)
T ss_pred ccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEeccc
Confidence 4566 69999999999999999999999999999999999999999988667899999999999887 99999996
Q ss_pred -----CceEEeecChhHHhhc
Q psy3001 422 -----KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 -----~G~i~~~g~~~~l~~~ 437 (602)
+|++++.|++++++..
T Consensus 226 ~~~~~~G~i~~~g~~~~~~~~ 246 (261)
T PRK14263 226 SQGTRTGYLVEMGPTAQIFQN 246 (261)
T ss_pred ccccCCceEEEeCCHHHHHhC
Confidence 8999999999988754
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=313.16 Aligned_cols=214 Identities=29% Similarity=0.357 Sum_probs=159.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.|+|++|++...+
T Consensus 338 ~~l~~vs~~i~~G-e~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l-- 414 (623)
T PRK10261 338 HAVEKVSFDLWPG-ETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASL-- 414 (623)
T ss_pred EEEeeeEeEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhc--
Confidence 4678888888887 99999999999999999999999999999999999998876543 35678999999842110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~G 353 (602)
+ ...++.+++.... ............+..+.++.++.. .........|| ||
T Consensus 415 -------~------------------~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LS--gG 467 (623)
T PRK10261 415 -------D------------------PRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFS--GG 467 (623)
T ss_pred -------C------------------CCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCC--HH
Confidence 0 0001111100000 000000000111222334444543 23455667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||+|||||+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+.. ||||++|++|++++.|+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~ 547 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIGP 547 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999988643 6899999999999988 99999999999999999
Q ss_pred hhHHhhcchhHH
Q psy3001 431 PSVLMKNKASIF 442 (602)
Q Consensus 431 ~~~l~~~~~~~~ 442 (602)
+++++..+...|
T Consensus 548 ~~~i~~~p~~~~ 559 (623)
T PRK10261 548 RRAVFENPQHPY 559 (623)
T ss_pred HHHHhcCCCCHH
Confidence 999876544444
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-33 Score=280.40 Aligned_cols=204 Identities=24% Similarity=0.333 Sum_probs=152.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCCC-hHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTLG-LHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~~-~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 34 ~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~- 111 (276)
T PRK14271 34 KTVLDQVSMGFPAR-AVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLEFRRRVGMLFQRPN- 111 (276)
T ss_pred EEEeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHHHhhheEEeccCCc-
Confidence 45788888888888 99999999999999999999999986 7999999999887653 3467889999999742
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccCC----cccc
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSP----IYSH 343 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~ 343 (602)
++. . ++.+++... ...............++ .++... ....
T Consensus 112 ----------l~~-------------~------tv~eni~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~l~~ 159 (276)
T PRK14271 112 ----------PFP-------------M------SIMDNVLAGVRAHKLVPRKEFRGVAQARLT---EVGLWDAVKDRLSD 159 (276)
T ss_pred ----------cCC-------------c------cHHHHHHHHHHhccCCCHHHHHHHHHHHHH---HcCCCchhhhHhhC
Confidence 110 0 010000000 00000011111111122 222211 1233
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
....+| +|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|||++||+++.+.. ||++++|++
T Consensus 160 ~~~~LS--gGq~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~ 237 (276)
T PRK14271 160 SPFRLS--GGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFD 237 (276)
T ss_pred CcccCC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 455667 69999999999999999999999999999999999999999887666899999999999887 999999999
Q ss_pred ceEEeecChhHHhhc
Q psy3001 423 GLVVEFDSPSVLMKN 437 (602)
Q Consensus 423 G~i~~~g~~~~l~~~ 437 (602)
|++++.++++++...
T Consensus 238 G~i~~~g~~~~~~~~ 252 (276)
T PRK14271 238 GRLVEEGPTEQLFSS 252 (276)
T ss_pred CEEEEeCCHHHHHhC
Confidence 999999999888664
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=277.46 Aligned_cols=207 Identities=21% Similarity=0.310 Sum_probs=152.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecC-CCChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIR-TLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~-~~~~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++. ..+...+++.++|++|++.
T Consensus 16 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~- 93 (249)
T PRK14253 16 NQALKSINLPIPAR-QVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPN- 93 (249)
T ss_pred eeeeecceEEecCC-CEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHHHhheeEEecCCC-
Confidence 35799999999998 99999999999999999999999986 5999999999885 3456677889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+ +.+++... .............+..+.++..+.. +.......
T Consensus 94 ----------~~~-------------~t------v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 144 (249)
T PRK14253 94 ----------PFP-------------MS------IYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAF 144 (249)
T ss_pred ----------cCc-------------cc------HHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcc
Confidence 110 00 00000000 0000000000001111111122111 12233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 145 ~LS--~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i 222 (249)
T PRK14253 145 GLS--GGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGEL 222 (249)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999988667899999999999988 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 223 ~~~g~~~~~~~~ 234 (249)
T PRK14253 223 VEHDDTQVIFSN 234 (249)
T ss_pred EEeCCHHHHHcC
Confidence 999988877543
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=280.43 Aligned_cols=209 Identities=24% Similarity=0.346 Sum_probs=152.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCC-----ChHHHhhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTL-----GLHTLRSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~-----~~~~~~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++... ....+++.++|++|++
T Consensus 17 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~ 95 (262)
T PRK09984 17 HQALHAVDLNIHHG-EMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKSRANTGYIFQQF 95 (262)
T ss_pred eEEEecceEEEcCC-cEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHHHHHhheEEEcccc
Confidence 45799999999998 999999999999999999999999986 49999999988653 2345678899999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc----cchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF----CSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
.. +. ..+...+-........+. ...... ....+..+.++.++.........
T Consensus 96 ~~-----------~~------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~ 150 (262)
T PRK09984 96 NL-----------VN------------RLSVLENVLIGALGSTPFWRTCFSWFTR--EQKQRALQALTRVGMVHFAHQRV 150 (262)
T ss_pred cc-----------cc------------CCcHHHHHHhhhcccccchhhhcccccH--HHHHHHHHHHHHcCCHHHHhCCc
Confidence 21 10 000000000000000000 000000 01112222333333333344455
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++
T Consensus 151 ~~LS--~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~ 228 (262)
T PRK09984 151 STLS--GGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQ 228 (262)
T ss_pred cccC--HHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6677 6999999999999999999999999999999999999999998753 7899999999999877 999999999
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|++++.|+++++
T Consensus 229 g~i~~~g~~~~~ 240 (262)
T PRK09984 229 GHVFYDGSSQQF 240 (262)
T ss_pred CEEEEeCCHHHh
Confidence 999999998775
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-32 Score=264.70 Aligned_cols=384 Identities=19% Similarity=0.209 Sum_probs=243.1
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY 79 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 79 (602)
...++....++|.++.++++..|+.-+++..++.++.++++|+..|+-. ...++.+.+.++..++... +++.+.+.
T Consensus 73 t~~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~ISf~-~s~lp~~~qa~il~l~s~aYLayLSp~mf~ 151 (546)
T COG4615 73 TTLGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNISFA-FSRLPELVQAIILTLGSAAYLAYLSPKMFL 151 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhcccccceeeh-HhhhHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 3467888999999999999999999999999999999999999999844 3445666665554444332 33333333
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHhhcccc---hhhhhcchh-----------------------HHH-------HHH
Q psy3001 80 GFVISLGTLFAAK----RLHEKLLKSMLRWSP---LFFDTTPVG-----------------------RVL-------SRF 122 (602)
Q Consensus 80 ~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~g-----------------------~~~-------~r~ 122 (602)
...+.+++..+.. .+-.+.+....+... ..+.....| +.. +-|
T Consensus 152 l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~h~~~~~~~a~~~r~~~~~~n~f 231 (546)
T COG4615 152 LTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYVHNNLYIPDAQEYRHHIIRANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHHHhhhcCcchHHHHhhhhhhhHH
Confidence 3332222222111 111111111111000 011111111 000 111
Q ss_pred HHHHhhhhhHHHH-HHHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccc
Q psy3001 123 SSDVNTLDNKLTL-SVQQ------------------TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEW 183 (602)
Q Consensus 123 ~~~~~~~~~~~~~-~~~~------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 183 (602)
..+.....+.+-. .+|. +......+-.|+..+....+.+..+.+|+++|.++-..|....
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakle~~~~~a~- 310 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKLELAPYKAD- 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHhhcCCcccc-
Confidence 1111111111100 0111 1111233445677788888889999999999999866443322
Q ss_pred ccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 184 VNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
... ....|.-..++++||.|.|.+. +|++-|+|.|||||||+++++.|+|.|++|+|.+||.++
T Consensus 311 ~~~---~q~~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV 387 (546)
T COG4615 311 FPR---PQAFPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPV 387 (546)
T ss_pred CCC---CCcCCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccC
Confidence 111 1122344678999999999753 388999999999999999999999999999999999999
Q ss_pred CCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH
Q psy3001 251 RTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330 (602)
Q Consensus 251 ~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (602)
..-+++++|+-++-|+-| .++| ...+. .+ .....+ ....-++
T Consensus 388 ~~e~ledYR~LfSavFsD-----------yhLF-------------~~ll~-----~e-----~~as~q----~i~~~Lq 429 (546)
T COG4615 388 SAEQLEDYRKLFSAVFSD-----------YHLF-------------DQLLG-----PE-----GKASPQ----LIEKWLQ 429 (546)
T ss_pred CCCCHHHHHHHHHHHhhh-----------Hhhh-------------HhhhC-----Cc-----cCCChH----HHHHHHH
Confidence 999999999998887764 2222 10000 00 001111 1111122
Q ss_pred HHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH-h-ccccEEEEeeecc
Q psy3001 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-E-FAHCTVLTIAHRL 408 (602)
Q Consensus 331 ~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~-~~~~tvi~itH~l 408 (602)
+++.-.+..+.+..-..+..|.|||.|+|+--|++.+.+|++|||=.+--||.-++++.+.+-- + ..|+||+.||||=
T Consensus 430 rLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 430 RLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred HHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 2222222222222222233346999999999999999999999999999999999999877644 2 3589999999999
Q ss_pred cccccCCeEEEEeCceEEeec
Q psy3001 409 NTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 409 ~~i~~~d~i~~l~~G~i~~~g 429 (602)
.....|||++.+++|++++..
T Consensus 510 ~YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred hhhhhHHHHHHHhcCceeecc
Confidence 999999999999999998754
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=277.87 Aligned_cols=208 Identities=21% Similarity=0.307 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++... +....++.++|++|++.
T Consensus 19 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 97 (253)
T PRK14261 19 KHALYDITISIPKN-RVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVALRRKIGMVFQRPN 97 (253)
T ss_pred eeeeeeeEEEECCC-cEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhhhhceEEEEecCCc
Confidence 35799999999998 99999999999999999999999763 489999999998765 44567888999999742
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++. .+...|-..... ..... ..........+.++ ..... ........
T Consensus 98 -----------~~~-------------~tv~eni~~~~~-~~~~~-~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~~~ 148 (253)
T PRK14261 98 -----------PFP-------------KSIYENVAYGPR-IHGEK-NKKTLDTIVEKSLK---GAALWDEVKDRLHDSAL 148 (253)
T ss_pred -----------cCc-------------ccHHHHHHhhHH-hcCCC-CHHHHHHHHHHHHH---HhcCchhhHHHhhcChh
Confidence 110 010000000000 00000 00000011111111 11111 11234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++||||++.+|+++||||||++||+.+.+.+.+.++++.+++|+|++||+++.+.. ||++++|++|++
T Consensus 149 ~LS--~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i 226 (253)
T PRK14261 149 SLS--GGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKL 226 (253)
T ss_pred hCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEE
Confidence 667 69999999999999999999999999999999999999999987667899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 227 ~~~g~~~~~~~~ 238 (253)
T PRK14261 227 IEFDKTTQIFEN 238 (253)
T ss_pred EEcCCHHHHHhC
Confidence 999998887654
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-33 Score=262.53 Aligned_cols=158 Identities=28% Similarity=0.462 Sum_probs=134.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|++|++.
T Consensus 14 ~~l~~~~~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~-------- 83 (173)
T cd03230 14 TALDDISLTVEKG-EIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYLPEEPS-------- 83 (173)
T ss_pred eeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEEecCCc--------
Confidence 4799999999998 999999999999999999999999999999999999887655 567789999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++. . .++.+ .. . +| +||+||+
T Consensus 84 ---~~~------------~------~tv~~------------~~-------------------~-----LS--~G~~qrv 104 (173)
T cd03230 84 ---LYE------------N------LTVRE------------NL-------------------K-----LS--GGMKQRL 104 (173)
T ss_pred ---ccc------------C------CcHHH------------Hh-------------------h-----cC--HHHHHHH
Confidence 110 0 00000 00 0 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+|||||+.+|++++|||||++||+.+...+.+.+++.. ++.|+|++||+++.+.. ||++++|++|++
T Consensus 105 ~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 105 ALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred HHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 99999999999999999999999999999999999874 46899999999999986 999999999874
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-33 Score=278.92 Aligned_cols=208 Identities=23% Similarity=0.303 Sum_probs=151.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 38 ~~il~~vs~~i~~G-e~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~ 116 (272)
T PRK14236 38 KQALFDISMRIPKN-RVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPN 116 (272)
T ss_pred eeEeeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCHHHHhccEEEEecCCc
Confidence 35788888888887 99999999999999999999999884 89999999998864 344567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+.. +.+....................+..+ ..+.. ........
T Consensus 117 -----------l~-------------~~tv~--enl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~~~~~~~~~~~ 167 (272)
T PRK14236 117 -----------PF-------------PKSIY--ENVVYGLRLQGINNRRVLDEAVERSLR---GAALWDEVKDRLHENAF 167 (272)
T ss_pred -----------cC-------------cccHH--HHHHHHHHhcCCCcHHHHHHHHHHHHH---HcCCChhHHHHhhCCcc
Confidence 11 00110 000000000000000000011111111 22211 12233455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|+++||||||++||+.+...+.+.++++.++.|+|++||+++.+.. ||++++|++|++
T Consensus 168 ~LS--~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i 245 (272)
T PRK14236 168 GLS--GGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKL 245 (272)
T ss_pred cCC--HHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEE
Confidence 666 69999999999999999999999999999999999999999988667899999999999877 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 246 ~~~g~~~~~~~~ 257 (272)
T PRK14236 246 VEYGDTDTLFTS 257 (272)
T ss_pred EecCCHHHHhcC
Confidence 999998887654
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-33 Score=266.22 Aligned_cols=165 Identities=32% Similarity=0.502 Sum_probs=135.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++|++|++..
T Consensus 15 ~l~~vs~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~------- 86 (182)
T cd03215 15 AVRDVSFEVRAG-EIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKR------- 86 (182)
T ss_pred eecceEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeEEecCCccc-------
Confidence 799999999998 9999999999999999999999999999999999999987764 4567889999996310
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+.++ ...++.++ +. .. . .+| +|||||+
T Consensus 87 -~~~~------------------~~~t~~e~--------l~---------~~---~------------~LS--~G~~qrl 113 (182)
T cd03215 87 -EGLV------------------LDLSVAEN--------IA---------LS---S------------LLS--GGNQQKV 113 (182)
T ss_pred -Cccc------------------CCCcHHHH--------HH---------HH---h------------hcC--HHHHHHH
Confidence 0000 00001000 00 00 0 055 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+||||++.+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 114 ~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 114 VLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHHHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999998874 47899999999999988 999999999974
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-33 Score=263.21 Aligned_cols=161 Identities=34% Similarity=0.514 Sum_probs=135.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC--hHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~--~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|++|++.
T Consensus 13 ~~~l~~i~~~i~~G-~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~----- 86 (178)
T cd03229 13 KTVLNDVSLNIEAG-EIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIGMVFQDFA----- 86 (178)
T ss_pred eEEEeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEEEEecCCc-----
Confidence 34799999999998 999999999999999999999999999999999999988765 5677889999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ . +.++.++ +. . .+| +|||
T Consensus 87 ------~~-------------~-----~~t~~~~-------------------------l~----~-----~lS--~G~~ 106 (178)
T cd03229 87 ------LF-------------P-----HLTVLEN-------------------------IA----L-----GLS--GGQQ 106 (178)
T ss_pred ------cC-------------C-----CCCHHHh-------------------------ee----e-----cCC--HHHH
Confidence 11 0 0001000 00 0 055 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
||++|||||+++|+++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||++++|++|+
T Consensus 107 qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 107 QRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999999999999988654 5899999999999987 99999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=275.94 Aligned_cols=195 Identities=29% Similarity=0.423 Sum_probs=146.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++|++..
T Consensus 28 ~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l------- 99 (226)
T cd03248 28 LVLQDVSFTLHPG-EVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVL------- 99 (226)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHH-------
Confidence 4789999999888 99999999999999999999999999999999999988777777778899999997421
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHH--HHHHHHHhhc--ccCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVAT--SRQLKRLESV--SRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq 354 (602)
+ ..+...|-.. . ............. ....+.++.+ +..+........+| +||
T Consensus 100 ----~-------------~~tv~~nl~~-~----~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LS--gG~ 155 (226)
T cd03248 100 ----F-------------ARSLQDNIAY-G----LQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLS--GGQ 155 (226)
T ss_pred ----H-------------hhhHHHHhcc-c----cCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCC--HHH
Confidence 1 1111110000 0 0000000100000 0011222222 33334455566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+..||+|++|++|++
T Consensus 156 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 156 KQRVAIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999999999999987667899999999999977999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=286.40 Aligned_cols=227 Identities=19% Similarity=0.209 Sum_probs=152.5
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| ||||.|++|||||+.+|++|+|||||+|||.++..|+.+.|.+.... ++|+++|.-+++.. |+.|+.|++++.
T Consensus 221 ~~S--gGwrmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl 297 (614)
T KOG0927|consen 221 DLS--GGWRMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKL 297 (614)
T ss_pred ccC--chHHHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccce
Confidence 455 69999999999999999999999999999999999999999876433 89999999999999 999999999995
Q ss_pred E-eecChhHHhhcchhHHHHHHHhhh-----h---h-----------HHHHHHH-hhhh---------------------
Q psy3001 426 V-EFDSPSVLMKNKASIFYSMAKDAG-----L---A-----------WLAVRLE-TVGN--------------------- 463 (602)
Q Consensus 426 ~-~~g~~~~l~~~~~~~~~~~~~~~~-----~---~-----------~~~~~~~-~~~~--------------------- 463 (602)
+ ..|+.+.+.....+......+... . + ....... ....
T Consensus 298 ~~y~Gnydqy~~tr~E~~~~q~K~~~kqqk~i~~~K~~ia~~g~g~a~~~rka~s~~K~~~km~~~gL~ek~~~~k~l~~ 377 (614)
T KOG0927|consen 298 IYYEGNYDQYVKTRSELEENQMKAYEKQQKQIAHMKDLIARFGHGSAKLGRKAQSKEKTLDKMEADGLTEKVVGEKVLSF 377 (614)
T ss_pred eeecCCHHHHhhHHHHHhHHHHHHHHHHHhHHHHhhHHHHhhcccchhhhHHHhhhhhhHHHHhhccccccccCCceEEE
Confidence 5 456666665432221111111000 0 0 0000000 0000
Q ss_pred -----------hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 464 -----------LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 464 -----------~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.+.+.++.+.|.++. ......+|.+..+++||+|||||+|||||+|+++|.+.|..|.|.-.-.
T Consensus 378 ~f~~vg~~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H---- 452 (614)
T KOG0927|consen 378 RFPEVGKIPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH---- 452 (614)
T ss_pred EcccccCCCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc----
Confidence 000000000000000 1112356888899999999999999999999999999999999976532
Q ss_pred CChhhhhccceEecCCc---cccccchhcccCC-CC-CCcHHHHHHHHHHcCCCccccccc
Q psy3001 533 LGLHTLRSRLTIIPQDP---VLFSGTLRLNLDP-VG-ESSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 533 ~~~~~lr~~i~~V~Qdp---~lf~~Tv~~nl~~-~~-~~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
.++++.-|.- ..+.-|.-++..+ .+ ..+.+++...|.++||.......|
T Consensus 453 -------~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p 506 (614)
T KOG0927|consen 453 -------NKLPRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP 506 (614)
T ss_pred -------ccchhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc
Confidence 2466666654 2345566666542 23 467788999999999986544333
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-33 Score=280.38 Aligned_cols=204 Identities=21% Similarity=0.345 Sum_probs=148.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...+++.++|++|++.
T Consensus 53 ~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~- 130 (285)
T PRK14254 53 QALDDVSMDIPEN-QVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPVALRRRIGMVFQKPN- 130 (285)
T ss_pred eeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchHhhhccEEEEecCCc-
Confidence 4567777777776 9999999999999999999999997 689999999998864 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ ..+ +.+++.... ...... ....+..+.++.++.. ........
T Consensus 131 ----------l~-------------~~t------v~enl~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~i~~~~~~~~~ 179 (285)
T PRK14254 131 ----------PF-------------PKS------IYDNVAYGLKIQGYDG--DIDERVEESLRRAALWDEVKDQLDSSGL 179 (285)
T ss_pred ----------cC-------------cCC------HHHHHHHHHHHcCCcH--HHHHHHHHHHHHcCCCchhHHHHhCCcc
Confidence 11 001 111100000 000000 0001111222222221 12334455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEE-EEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVL-VLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~-~l~~G~ 424 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. |||++ +|++|+
T Consensus 180 ~LS--gGe~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~ 257 (285)
T PRK14254 180 DLS--GGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGE 257 (285)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCE
Confidence 677 69999999999999999999999999999999999999999988666899999999999987 99975 579999
Q ss_pred EEeecChhHHhhc
Q psy3001 425 VVEFDSPSVLMKN 437 (602)
Q Consensus 425 i~~~g~~~~l~~~ 437 (602)
+++.+++++++..
T Consensus 258 i~~~g~~~~~~~~ 270 (285)
T PRK14254 258 LVEFDDTDKIFEN 270 (285)
T ss_pred EEEeCCHHHHHhC
Confidence 9999988887653
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-32 Score=324.87 Aligned_cols=221 Identities=19% Similarity=0.201 Sum_probs=146.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+|+.+.+| ++++|+||||||||||+|+|+|.++|+ +|+|.++|.++.+... ++.++|++|+......
T Consensus 178 ~~IL~~vs~~i~~G-e~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~~---~~~i~yv~Q~d~~~~~ 253 (1470)
T PLN03140 178 LTILKDASGIIKPS-RMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGV 253 (1470)
T ss_pred ceeccCCeEEEeCC-eEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhcc---cceeEEecccccCCCc
Confidence 34799999999998 999999999999999999999999998 9999999998865532 6789999997321110
Q ss_pred hccCCceeEeeecccceeeeccccce-eec--ccc--cccc--cccccchhHHHHHH-H-------HHHHHHHhhcccCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSL-IFT--EDV--KPLI--ITPFCSNLQRFYVA-T-------SRQLKRLESVSRSP 339 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~--~~~~--~~~~~~~~~~~~~~-~-------~~~~~~l~~~~~~~ 339 (602)
+...+...|. ....+.- ... .+. .+.. ..+ ....+.+... . ......++.+++..
T Consensus 254 lTV~EtL~f~---------a~~~~~~~~~~~~~~~~~~ek~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~ 323 (1470)
T PLN03140 254 MTVKETLDFS---------ARCQGVGTRYDLLSELARREKDAGIFP-EAEVDLFMKATAMEGVKSSLITDYTLKILGLDI 323 (1470)
T ss_pred CcHHHHHHHH---------HHhcCCCCcccchhhcCHHHHhccCCC-chhhHHHHHHhhhhcchhhHHHHHHHHHcCCcc
Confidence 0000000000 0000000 000 000 0000 000 0000000000 0 00112233344432
Q ss_pred c-----ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccc-cc
Q psy3001 340 I-----YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLN-TI 411 (602)
Q Consensus 340 ~-----~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~-~i 411 (602)
. .......+| |||||||+||++|+.+|++++|||||++||+.+...+.+.|++.. .++|+|+++|++. .+
T Consensus 324 ~~~t~vg~~~~rglS--GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i 401 (1470)
T PLN03140 324 CKDTIVGDEMIRGIS--GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPET 401 (1470)
T ss_pred ccCceeCCccccCCC--cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHH
Confidence 1 122334566 699999999999999999999999999999999999999999874 3789999999974 56
Q ss_pred cc-CCeEEEEeCceEEeecChhHH
Q psy3001 412 ID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 412 ~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
.+ +|+|++|++|+++..|+.+++
T Consensus 402 ~~lfD~vilL~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 402 FDLFDDIILLSEGQIVYQGPRDHI 425 (1470)
T ss_pred HHHhheEEEeeCceEEEeCCHHHH
Confidence 66 999999999999988765543
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-33 Score=277.47 Aligned_cols=205 Identities=18% Similarity=0.308 Sum_probs=152.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .....+++.++|++|++.
T Consensus 23 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~ 101 (264)
T PRK14243 23 FLAVKNVWLDIPKN-QITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVRRRIGMVFQKPN 101 (264)
T ss_pred EEEeecceEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHHHhhhEEEEccCCc
Confidence 35789999999988 9999999999999999999999986 489999999998853 345667889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchh-HHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNL-QRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++.. ++.+++.... .... ........+.++ ..+. .......
T Consensus 102 -----------~~~~-------------------tv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~l~~~~~~~ 148 (264)
T PRK14243 102 -----------PFPK-------------------SIYDNIAYGARINGYKGDMDELVERSLR---QAALWDEVKDKLKQS 148 (264)
T ss_pred -----------cccc-------------------cHHHHHHhhhhhcCcchHHHHHHHHHHH---HhCchhhHHHHhcCC
Confidence 1100 0101000000 0000 000001111111 1111 1112344
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe--
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-- 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-- 421 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+
T Consensus 149 ~~~LS--gGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~ 226 (264)
T PRK14243 149 GLSLS--GGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVE 226 (264)
T ss_pred cccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecc
Confidence 55677 69999999999999999999999999999999999999999988667899999999999988 99999998
Q ss_pred -------CceEEeecChhHHhhcc
Q psy3001 422 -------KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 -------~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.|+++++...+
T Consensus 227 ~~~~~~~~g~i~~~~~~~~~~~~~ 250 (264)
T PRK14243 227 LTEGGGRYGYLVEFDRTEKIFNSP 250 (264)
T ss_pred cccccccCceEEEeCCHHHHHhCC
Confidence 89999999999987653
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-33 Score=261.23 Aligned_cols=156 Identities=46% Similarity=0.709 Sum_probs=136.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+++++|++
T Consensus 16 ~~l~~i~~~i~~G-~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~~~~--------- 85 (171)
T cd03228 16 PVLKDVSLTIKPG-EKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAYVPQDP--------- 85 (171)
T ss_pred ccccceEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEEEcCCc---------
Confidence 4799999999998 999999999999999999999999999999999999988877778888999999962
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.++ . .++ .+ .+ +| +|||||+
T Consensus 86 --~~~-------------~------~t~----------------------~e---~l------------LS--~G~~~rl 105 (171)
T cd03228 86 --FLF-------------S------GTI----------------------RE---NI------------LS--GGQRQRI 105 (171)
T ss_pred --hhc-------------c------chH----------------------HH---Hh------------hC--HHHHHHH
Confidence 111 0 000 00 00 45 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+||||++.+|++|+|||||++||+.+...+.+.+++..+++|+|++||+++.+..||++++|++|+
T Consensus 106 ~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 106 AIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred HHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999999999999999988766799999999999997799999999884
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-33 Score=277.67 Aligned_cols=205 Identities=21% Similarity=0.303 Sum_probs=151.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .....+++.++|++|++.
T Consensus 21 ~il~~isl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~- 98 (259)
T PRK14260 21 KAIEGISMDIYRN-KVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPN- 98 (259)
T ss_pred EeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchHhhhhheEEEecccc-
Confidence 4789999999998 99999999999999999999999985 48999999998854 344567889999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhccc----CCcccccC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSR----SPIYSHFG 345 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~ 345 (602)
++ .. ++.+++.... ....... .......+.++..+. ........
T Consensus 99 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~~~~ 148 (259)
T PRK14260 99 ----------PF-------------PM------SIYENVAYGVRISAKLPQA-DLDEIVESALKGAALWQEVKDKLNKSA 148 (259)
T ss_pred ----------cC-------------Cc------cHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCcchhhhHhcCCc
Confidence 11 00 1111100000 0000000 000111111222221 11233445
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe---
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD--- 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~--- 421 (602)
..+| +|||||++|||||+++|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+
T Consensus 149 ~~LS--~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~ 226 (259)
T PRK14260 149 LGLS--GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDE 226 (259)
T ss_pred ccCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccC
Confidence 5677 69999999999999999999999999999999999999999987667899999999999988 99999998
Q ss_pred --CceEEeecChhHHhhc
Q psy3001 422 --KGLVVEFDSPSVLMKN 437 (602)
Q Consensus 422 --~G~i~~~g~~~~l~~~ 437 (602)
+|++++.|+++++.+.
T Consensus 227 ~~~G~i~~~~~~~~~~~~ 244 (259)
T PRK14260 227 SRIGQMVEFGVTTQIFSN 244 (259)
T ss_pred CCCceEEEeCCHHHHhcC
Confidence 5999999999988654
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-33 Score=242.36 Aligned_cols=204 Identities=28% Similarity=0.372 Sum_probs=154.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee--cCCC----ChHHHhhccceecccchhhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD--IRTL----GLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~--~~~~----~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+-|+++.-++| +.+.+.||||+|||||++.+.=+.-|.+|+..|.|.. .+.. ....+|+.+|+|+|.
T Consensus 17 ~lfdi~l~~~~g-etlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqq----- 90 (242)
T COG4161 17 ALFDITLDCPEG-ETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQ----- 90 (242)
T ss_pred heeeeeecCCCC-CEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHHHHhhhhhhhh-----
Confidence 455566665566 8999999999999999999999999999999997753 3322 245789999999994
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccc-ccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
+.+...-++ +.++..+.. ..+. ...+..+..+.+..+.+.+..+.++..+|
T Consensus 91 ------------------------y~lwphltv~enlieap~kv~gl~-~~qa~~~a~ellkrlrl~~~adr~plhls-- 143 (242)
T COG4161 91 ------------------------YNLWPHLTVQENLIEAPCRVLGLS-KDQALARAEKLLKRLRLKPYADRYPLHLS-- 143 (242)
T ss_pred ------------------------hccCchhHHHHHHHhhhHHHhCCC-HHHHHHHHHHHHHHhccccccccCceecc--
Confidence 222222111 111101100 0000 11223344455556666777888888888
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||+||+||||||..+|++|++||||++|||+-...+.+.++++.+ |.|-++|||..+.... |.+++.|++|+|++.|
T Consensus 144 ggqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g 223 (242)
T COG4161 144 GGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred cchhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeec
Confidence 5999999999999999999999999999999999999999999865 7999999999999998 9999999999999999
Q ss_pred ChhHHhh
Q psy3001 430 SPSVLMK 436 (602)
Q Consensus 430 ~~~~l~~ 436 (602)
+.+-+-.
T Consensus 224 ~a~~ft~ 230 (242)
T COG4161 224 DASCFTE 230 (242)
T ss_pred chhhccC
Confidence 8776543
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-33 Score=271.28 Aligned_cols=197 Identities=21% Similarity=0.294 Sum_probs=146.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH---HHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~---~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...++. ..++.++|++|++..
T Consensus 18 ~~il~~vs~~i~~G-~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~--- 93 (220)
T TIGR02982 18 KQVLFDINLEINPG-EIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLRRNIGYIFQAHNL--- 93 (220)
T ss_pred eeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHHhheEEEcCChhh---
Confidence 45899999999998 99999999999999999999999999999999999998776643 467899999998431
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+. ..+...+-..... .. ........ ..+..+.++.++..+........+| +||
T Consensus 94 --------~~------------~~t~~~n~~~~~~-~~-~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~lS--~G~ 146 (220)
T TIGR02982 94 --------LG------------FLTARQNVQMALE-LQ-PNLSYQEA---RERARAMLEAVGLGDHLDYYPHNLS--GGQ 146 (220)
T ss_pred --------cC------------CCCHHHHHHHHHH-hc-cCCCHHHH---HHHHHHHHHHcCChhhhhcChhhCC--HHH
Confidence 10 0011100000000 00 00000111 1122233334444444555566777 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.++..+.+.|+++.+ ++|+|++||+++....||++++|++|++
T Consensus 147 ~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 147 KQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999988653 6999999999986544999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-33 Score=278.37 Aligned_cols=208 Identities=22% Similarity=0.314 Sum_probs=147.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++.++|++|++...+..
T Consensus 20 ~~il~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~~-- 93 (272)
T PRK15056 20 HTALRDASFTVPGG-SIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAYVPQSEEVDWSF-- 93 (272)
T ss_pred cEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEEeccccccccCC--
Confidence 45899999999998 9999999999999999999999999999999999988742 11234699999984321100
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+..+ ...+... ..... ........... .+..+.++.++...........+| +|||||
T Consensus 94 --~~~~-------------~~~i~~~-~~~~~--~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~LS--gG~~qr 150 (272)
T PRK15056 94 --PVLV-------------EDVVMMG-RYGHM--GWLRRAKKRDR---QIVTAALARVDMVEFRHRQIGELS--GGQKKR 150 (272)
T ss_pred --Ccch-------------hhheecc-ccccc--ccccCCCHHHH---HHHHHHHHHcCChhHhcCCcccCC--HHHHHH
Confidence 0000 0000000 00000 00000000000 111122233333333444455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|||++||+++.+.. ||+++++ +|++++.|+++++.
T Consensus 151 v~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~ 229 (272)
T PRK15056 151 VFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTF 229 (272)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhcc
Confidence 999999999999999999999999999999999998874 47899999999999877 9999777 89999999888764
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-33 Score=272.21 Aligned_cols=195 Identities=22% Similarity=0.273 Sum_probs=146.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.+++++|++..
T Consensus 13 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~~q~~~~------ 81 (223)
T TIGR03740 13 QTAVNNISLTVPKN-SVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSLIESPPL------ 81 (223)
T ss_pred EEEEeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEEcCCCCc------
Confidence 45799999999998 999999999999999999999999999999999998775322 2579999997321
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. ++.+++... ...... ..+..+.++.++..+........+| +||||
T Consensus 82 -----~~------------~~------t~~~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~ 131 (223)
T TIGR03740 82 -----YE------------NL------TARENLKVHTTLLGLP-----DSRIDEVLNIVDLTNTGKKKAKQFS--LGMKQ 131 (223)
T ss_pred -----cc------------cC------CHHHHHHHHHHHcCCC-----HHHHHHHHHHcCCcHHHhhhHhhCC--HHHHH
Confidence 10 00 111110000 000000 0111222223333333444455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++||||++.+|++|+|||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||++++|++|+++..+++.+
T Consensus 132 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 132 RLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred HHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 9999999999999999999999999999999999998875 47899999999999977 99999999999999887653
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=276.97 Aligned_cols=205 Identities=18% Similarity=0.306 Sum_probs=151.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...|+|+||.+.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 33 ~~~l~~vs~~i~~G-e~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~ 111 (274)
T PRK14265 33 FLALVDVHLKIPAK-KIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVKLRRQVGMVFQRPN 111 (274)
T ss_pred eEEEeeeeeEEcCC-CEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhHHHhhcEEEEccCCc
Confidence 35788999999888 99999999999999999999999863 69999999998854 234467889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhH-HHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQ-RFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
++ ..+ +.+++... ...... .......+.+ +..+. .......
T Consensus 112 -----------l~-------------~~t------v~~nl~~~~~~~~~~~~~~~~~~~~l---~~~~l~~~l~~~~~~~ 158 (274)
T PRK14265 112 -----------PF-------------PKS------IYENIAFAPRANGYKGNLDELVEDSL---RRAAIWEEVKDKLKEK 158 (274)
T ss_pred -----------cc-------------ccc------HHHHHHhHHHhcCchHHHHHHHHHHH---HHcccchhhHHHhcCC
Confidence 11 000 11100000 000000 0000011111 11111 1123344
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe--
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-- 421 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-- 421 (602)
...+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|||++||+++.+.. ||++++|+
T Consensus 159 ~~~LS--gGq~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~ 236 (274)
T PRK14265 159 GTALS--GGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTE 236 (274)
T ss_pred cccCC--HHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecc
Confidence 55677 69999999999999999999999999999999999999999988667899999999999987 99999997
Q ss_pred -------CceEEeecChhHHhhcc
Q psy3001 422 -------KGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 422 -------~G~i~~~g~~~~l~~~~ 438 (602)
+|++++.|+++++...+
T Consensus 237 ~~~~~~~~G~~~~~g~~~~~~~~~ 260 (274)
T PRK14265 237 IDEYGKRRGKLVEFSPTEQMFGSP 260 (274)
T ss_pred cccccccCceEEEeCCHHHHHhCC
Confidence 89999999999887653
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=244.09 Aligned_cols=195 Identities=28% Similarity=0.418 Sum_probs=152.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||+..+| |.++|+||||||||||+|+++-+.+|++|++++.|.+++.+++..+|+.++|+.|.
T Consensus 15 ~a~il~~isl~v~~G-e~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~-------- 85 (223)
T COG4619 15 DAKILNNISLSVRAG-EFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQT-------- 85 (223)
T ss_pred CCeeecceeeeecCC-ceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcC--------
Confidence 456899999999999 99999999999999999999999999999999999999999999999999999997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~lsgs~Gq~ 355 (602)
|-+| . +++++++.++.....++. ......+.+....+ ...+...-..+| ||||
T Consensus 86 ---paLf-------------g------~tVeDNlifP~~~r~rr~--dr~aa~~llar~~l~~~~L~k~it~lS--GGE~ 139 (223)
T COG4619 86 ---PALF-------------G------DTVEDNLIFPWQIRNRRP--DRAAALDLLARFALPDSILTKNITELS--GGEK 139 (223)
T ss_pred ---cccc-------------c------cchhhccccchHHhccCC--ChHHHHHHHHHcCCchhhhcchhhhcc--chHH
Confidence 4444 2 222333222211111110 00111222222222 223444556677 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
||++|+|-|---|+||+||||||+||+.+.+.+.+++.++. ++..++.|||+.+...+ +|+++-+..|++-
T Consensus 140 QriAliR~Lq~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~ 213 (223)
T COG4619 140 QRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAG 213 (223)
T ss_pred HHHHHHHHhhcCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCccc
Confidence 99999999999999999999999999999999999998875 46899999999999554 9999999998873
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=273.92 Aligned_cols=208 Identities=19% Similarity=0.258 Sum_probs=152.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+.+ |++|+|.++|.++... +...+++.++|+||++.
T Consensus 16 ~~~l~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~ 94 (250)
T PRK14266 16 AHILKNVNLDIPKN-SVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPN 94 (250)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHHHhhheEEEecCCc
Confidence 45899999999998 9999999999999999999999874 4899999999988653 35567889999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
+|.. +...+ +................ .+..+.++..+.. ........
T Consensus 95 -----------~~~~-------------t~~~n--l~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~l~~~~~~~~~ 145 (250)
T PRK14266 95 -----------PFPK-------------SIFDN--VAYGLRIHGEDDEDFIE---ERVEESLKAAALWDEVKDKLDKSAL 145 (250)
T ss_pred -----------cCcc-------------hHHHH--HHhHHhhcCCCCHHHHH---HHHHHHHHHcCCchhHHHHHhCCcc
Confidence 2210 10000 00000000000000000 1111111121111 12234455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+++|++|+|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++
T Consensus 146 ~LS--~Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i 223 (250)
T PRK14266 146 GLS--GGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEI 223 (250)
T ss_pred cCC--HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeE
Confidence 666 69999999999999999999999999999999999999999988667899999999999988 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.|+++++...
T Consensus 224 ~~~g~~~~~~~~ 235 (250)
T PRK14266 224 IESGLTDQIFIN 235 (250)
T ss_pred EEeCCHHHHHhC
Confidence 999999887654
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=263.83 Aligned_cols=171 Identities=25% Similarity=0.332 Sum_probs=141.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+.... +..++|++|++.
T Consensus 13 ~~~l~~is~~i~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~---- 87 (200)
T cd03217 13 KEILKGVNLTIKKG-EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFLAFQYPP---- 87 (200)
T ss_pred EEeeeccceEECCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEEeecChh----
Confidence 35899999999998 99999999999999999999999 58999999999999988776554 456999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++ .. ....... + .....+| +||
T Consensus 88 -------~~-------------~~-----------------~~~~~~l-------~------------~~~~~LS--~G~ 109 (200)
T cd03217 88 -------EI-------------PG-----------------VKNADFL-------R------------YVNEGFS--GGE 109 (200)
T ss_pred -------hc-------------cC-----------------ccHHHHH-------h------------hccccCC--HHH
Confidence 11 00 0000000 0 1123466 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccc--cCCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTII--DSDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~--~~d~i~~l~~G~i~~~g~~ 431 (602)
|||++|||||+.+|++++|||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.++.
T Consensus 110 ~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~~~ 189 (200)
T cd03217 110 KKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDK 189 (200)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEccH
Confidence 9999999999999999999999999999999999999988754 689999999999987 5999999999999998843
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-33 Score=275.32 Aligned_cols=208 Identities=22% Similarity=0.322 Sum_probs=150.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--C---CCceEEECCeecCC--CChHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--P---ADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~---~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ | ++|+|.++|.++.. .....+++.++|++|++.
T Consensus 18 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~ 96 (252)
T PRK14255 18 FEALKGIDLDFNQN-EITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPN 96 (252)
T ss_pred eeEEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHHhcCeEEEEECCCc
Confidence 35799999999998 9999999999999999999999975 5 59999999998864 234566789999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc----CCcccccCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR----SPIYSHFGE 346 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~ 346 (602)
++. .+.. +.+......................++ ..+. .........
T Consensus 97 -----------~~~-------------~tv~--~nl~~~~~~~~~~~~~~~~~~~~~~l~---~~~l~~~i~~~~~~~~~ 147 (252)
T PRK14255 97 -----------PFP-------------FSIY--ENVIYGLRLAGVKDKAVLDEAVETSLK---QAAIWDEVKDHLHESAL 147 (252)
T ss_pred -----------cCC-------------CcHH--HHHHHHHHHcCCCCHHHHHHHHHHHHH---HcCCccchhhHHhcCcc
Confidence 110 0000 000000000000000000011111111 2111 112233445
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
.+| +|||||++|||||+.+|++|||||||++||+.+...+.+.|++..++.|+|+|||+++.+.. ||+|++|++|++
T Consensus 148 ~LS--~Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 225 (252)
T PRK14255 148 SLS--GGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNL 225 (252)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 677 69999999999999999999999999999999999999999987666899999999999987 999999999999
Q ss_pred EeecChhHHhhc
Q psy3001 426 VEFDSPSVLMKN 437 (602)
Q Consensus 426 ~~~g~~~~l~~~ 437 (602)
++.+++.+.+..
T Consensus 226 ~~~~~~~~~~~~ 237 (252)
T PRK14255 226 IEFADTKQMFLN 237 (252)
T ss_pred EEeCCHHHHhcC
Confidence 999998887654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-33 Score=267.73 Aligned_cols=190 Identities=21% Similarity=0.302 Sum_probs=138.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++..+.. ...++.++|++|++.
T Consensus 11 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~--- 86 (206)
T TIGR03608 11 KIILDDLNLTIEKG-KMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLGYLFQNFA--- 86 (206)
T ss_pred EEEEeceEEEEeCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCeeEEecchh---
Confidence 35899999999998 9999999999999999999999999999999999998764432 245678999999732
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++. ..+ +.+++... ....... .....+..+.++.++...........+| +
T Consensus 87 --------~~~------------~~t------~~e~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~lS--~ 137 (206)
T TIGR03608 87 --------LIE------------NET------VEENLDLGLKYKKLSK-KEKREKKKEALEKVGLNLKLKQKIYELS--G 137 (206)
T ss_pred --------hcc------------CCc------HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCchhhhcCChhhCC--H
Confidence 110 001 11110000 0000000 0011122223333444333445556677 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.++++. ++.|+|++||+++.+..||++++|
T Consensus 138 G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 138 GEQQRVALARAILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 99999999999999999999999999999999999999998864 478999999999976569999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-32 Score=275.27 Aligned_cols=206 Identities=21% Similarity=0.318 Sum_probs=149.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-----CCceEEECCeecCC----CChHHHhhccceecccc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-----ADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-----~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~ 269 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. .....+++.++|++|++
T Consensus 30 ~vl~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~ 108 (265)
T PRK14252 30 QALKNINMMVHEK-QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKP 108 (265)
T ss_pred eeeeeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccccccccccCHHHHhccEEEEccCC
Confidence 5788888888887 99999999999999999999999975 79999999987642 33456788999999973
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhccc----CCccccc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSR----SPIYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~ 344 (602)
. ++. .+ +.+++.... ............+....++.... .+.....
T Consensus 109 ~-----------~~~-------------~t------v~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~ 158 (265)
T PRK14252 109 N-----------PFP-------------KS------IFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDL 158 (265)
T ss_pred c-----------CCc-------------ch------HHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCC
Confidence 2 110 01 111000000 00000000000011111111111 1122334
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
...+| +||+||++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|+|||+++++.. ||++++|++|
T Consensus 159 ~~~LS--~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G 236 (265)
T PRK14252 159 AFNLS--GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMG 236 (265)
T ss_pred cccCC--HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 45666 69999999999999999999999999999999999999999987667899999999999987 9999999999
Q ss_pred eEEeecChhHHhhc
Q psy3001 424 LVVEFDSPSVLMKN 437 (602)
Q Consensus 424 ~i~~~g~~~~l~~~ 437 (602)
++++.|+++++...
T Consensus 237 ~i~~~g~~~~~~~~ 250 (265)
T PRK14252 237 ELIEFGATDTIFIK 250 (265)
T ss_pred EEEEeCCHHHHHhC
Confidence 99999998887654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-32 Score=274.62 Aligned_cols=207 Identities=20% Similarity=0.277 Sum_probs=152.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-----CceEEECCeecCC--CChHHHhhccceecccchh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-----DGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-----~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~ 271 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+...+++.+++++|++.
T Consensus 21 ~il~~is~~i~~G-e~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~- 98 (261)
T PRK14258 21 KILEGVSMEIYQS-KVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPN- 98 (261)
T ss_pred eEeeceEEEEcCC-cEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchHHhhccEEEEecCCc-
Confidence 5799999999988 999999999999999999999999985 8999999998743 344567888999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccC----CcccccCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRS----PIYSHFGE 346 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~ 346 (602)
++ .. ++.+++.... ............+..+.++.++.. +.......
T Consensus 99 ----------l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 149 (261)
T PRK14258 99 ----------LF-------------PM------SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSAL 149 (261)
T ss_pred ----------cC-------------cc------cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcc
Confidence 11 00 1111100000 000000000001111222222221 12344455
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC-
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK- 422 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~- 422 (602)
.+| +|||||++|||||+++|++|||||||++||+.+...+.+.++++. .++|+|++||+++.+.. ||+|++|++
T Consensus 150 ~LS--gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~ 227 (261)
T PRK14258 150 DLS--GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGN 227 (261)
T ss_pred cCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccC
Confidence 677 699999999999999999999999999999999999999998853 47999999999999987 999999999
Q ss_pred ----ceEEeecChhHHhhcc
Q psy3001 423 ----GLVVEFDSPSVLMKNK 438 (602)
Q Consensus 423 ----G~i~~~g~~~~l~~~~ 438 (602)
|++++.++++++...+
T Consensus 228 ~~~~G~i~~~~~~~~~~~~~ 247 (261)
T PRK14258 228 ENRIGQLVEFGLTKKIFNSP 247 (261)
T ss_pred CCcCceEEEeCCHHHHHhCC
Confidence 9999999999987653
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=242.62 Aligned_cols=212 Identities=25% Similarity=0.338 Sum_probs=167.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++.|||+..++ +.+|++|.||||||||.|+|+|+++|++|+|.+||.++.--+.....++|-+++|+|...|..
T Consensus 28 AV~~vSFtL~~~-QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NP---- 102 (267)
T COG4167 28 AVKPVSFTLREG-QTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNP---- 102 (267)
T ss_pred cccceEEEecCC-cEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHhhhhheeeeecCCccccCh----
Confidence 678899999998 999999999999999999999999999999999999998777888889999999998765531
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl 358 (602)
-+-.+ ..+..++..+.+. .-.++..+..+++..+++.|- .......++ .||||||
T Consensus 103 -Rl~iG--------qiLd~PL~l~T~~-------------~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la--~~QKQRV 158 (267)
T COG4167 103 -RLRIG--------QILDFPLRLNTDL-------------EPEQRRKQIFETLRMVGLLPDHANYYPHMLA--PGQKQRV 158 (267)
T ss_pred -hhhhh--------hHhcchhhhcccC-------------ChHHHHHHHHHHHHHhccCccccccchhhcC--chhHHHH
Confidence 11100 0001111111111 112344556677777776553 334556677 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|+||||+-+|+|+|-||+.++||...+..+.....++. .|.+-|+|+.++..+.. +|+|+||+.|+++|+|++.+++
T Consensus 159 aLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~ 238 (267)
T COG4167 159 ALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVL 238 (267)
T ss_pred HHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCChhhhh
Confidence 99999999999999999999999998888887766653 47899999999999998 9999999999999999999998
Q ss_pred hcchh
Q psy3001 436 KNKAS 440 (602)
Q Consensus 436 ~~~~~ 440 (602)
..+..
T Consensus 239 a~P~~ 243 (267)
T COG4167 239 ASPLH 243 (267)
T ss_pred cCCcc
Confidence 76543
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=269.97 Aligned_cols=200 Identities=21% Similarity=0.276 Sum_probs=144.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++. ...+++.+++++|++.
T Consensus 20 ~~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~~~~q~~~---- 91 (226)
T cd03234 20 ARILNDVSLHVESG-QVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQKCVAYVRQDDI---- 91 (226)
T ss_pred cccccCceEEEcCC-eEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhcccEEEeCCCCc----
Confidence 45899999999998 9999999999999999999999999 99999999999875 3467788999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH-HHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK-RLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++.. .+...+-..... ........... ...+... .++..+..+........+| +|
T Consensus 92 -------~~~~------------~tv~enl~~~~~--~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G 147 (226)
T cd03234 92 -------LLPG------------LTVRETLTYTAI--LRLPRKSSDAI-RKKRVEDVLLRDLALTRIGGNLVKGIS--GG 147 (226)
T ss_pred -------cCcC------------CcHHHHHHHHHH--hhcccccchHH-HHHHHHHHHHHhhcchhhhcccccCcC--HH
Confidence 1100 011000000000 00000000000 0001111 2223333333344445677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecc-ccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRL-NTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l-~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|+||++|||||+.+|++|||||||++||+.+...+.+.+++.. ++.|+|++||++ +.+.. ||++++|++|++++.|
T Consensus 148 ~~qrl~laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 148 ERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999999999998864 468999999998 47766 9999999999998754
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=272.24 Aligned_cols=212 Identities=18% Similarity=0.240 Sum_probs=147.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHh-hccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLR-SRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~-~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++...++...+ ..+++++|++.....
T Consensus 14 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 92 (248)
T PRK09580 14 KAILRGLNLEVRPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPG 92 (248)
T ss_pred eeeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcceEEEecCchhccc
Confidence 34799999999998 999999999999999999999995 69999999999998877766554 579999997431100
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccC-CcCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFG-ETVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~-~~lsgs~ 352 (602)
. .. ..+.. .. . ..+.. ........ .........+.++.++.. ....... ..+| +
T Consensus 93 ~----~~-----------~~~~~-~~-~-~~~~~---~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS--~ 148 (248)
T PRK09580 93 V----SN-----------QFFLQ-TA-L-NAVRS---YRGQEPLD-RFDFQDLMEEKIALLKMPEDLLTRSVNVGFS--G 148 (248)
T ss_pred h----hH-----------HHHHH-Hh-h-hhhhc---ccccccch-HHHHHHHHHHHHHHcCCChhhcccCCCCCCC--H
Confidence 0 00 00000 00 0 00000 00000000 000011111122222221 1112222 2466 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc--CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g 429 (602)
|||||++||||++++|++|||||||++||+.+...+.+.++.+.+ ++|||++||+++.+.. +|++++|++|+++..|
T Consensus 149 G~~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 149 GEKKRNDILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999987654 6899999999999876 7999999999999988
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
+++..
T Consensus 229 ~~~~~ 233 (248)
T PRK09580 229 DFTLV 233 (248)
T ss_pred CHHHH
Confidence 87643
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-32 Score=261.79 Aligned_cols=179 Identities=23% Similarity=0.341 Sum_probs=130.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC--CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~--~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .....+++.++|++|++...
T Consensus 6 ~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~---- 80 (190)
T TIGR01166 6 EVLKGLNFAAERG-EVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQ---- 80 (190)
T ss_pred ceecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhc----
Confidence 4799999999998 9999999999999999999999999999999999998852 22345678899999974210
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++... ......... .+..+.++.++..+........+| +|
T Consensus 81 -----~~-------------~~------tv~~nl~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS--~G 131 (190)
T TIGR01166 81 -----LF-------------AA------DVDQDVAFGPLNLGLSEAEVE---RRVREALTAVGASGLRERPTHCLS--GG 131 (190)
T ss_pred -----cc-------------cc------cHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCchhhhhCChhhCC--HH
Confidence 11 00 111110000 000000011 111222223333334445556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI 411 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i 411 (602)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++++
T Consensus 132 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~~ 190 (190)
T TIGR01166 132 EKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDLA 190 (190)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeeccccC
Confidence 9999999999999999999999999999999999999998874 478999999998753
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-32 Score=270.75 Aligned_cols=211 Identities=18% Similarity=0.209 Sum_probs=148.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHHhh-ccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++ .+++++|++.
T Consensus 20 ~~~l~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~---- 94 (252)
T CHL00131 20 NEILKGLNLSINKG-EIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLGIFLAFQYPI---- 94 (252)
T ss_pred EEeeecceeEEcCC-cEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheeeEEEEecccc----
Confidence 35899999999998 99999999999999999999998 6899999999999998877665544 4788998732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cCCCCh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TVTGNV 352 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~lsgs~ 352 (602)
++..... ...+.+.................... .+..+.++.++.. ........ .+| +
T Consensus 95 -------~~~~~~~--------~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~~~LS--g 154 (252)
T CHL00131 95 -------EIPGVSN--------ADFLRLAYNSKRKFQGLPELDPLEFL---EIINEKLKLVGMDPSFLSRNVNEGFS--G 154 (252)
T ss_pred -------ccccccH--------HHHHHHhhhhhhcccccccccHHHHH---HHHHHHHHHcCCchhhhccccccCCC--H
Confidence 1100000 00000000000000000000000011 1112223333332 12233332 477 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|+++||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 155 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 155 GEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47999999999999875 8999999999999998
Q ss_pred ChhH
Q psy3001 430 SPSV 433 (602)
Q Consensus 430 ~~~~ 433 (602)
+++.
T Consensus 235 ~~~~ 238 (252)
T CHL00131 235 DAEL 238 (252)
T ss_pred Chhh
Confidence 8773
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-32 Score=258.00 Aligned_cols=167 Identities=25% Similarity=0.347 Sum_probs=134.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|.++. ..+++.++|++|++.
T Consensus 20 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~~~i~~~~q~~~----- 89 (192)
T cd03232 20 RQLLNNISGYVKPG-TLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQRSTGYVEQQDV----- 89 (192)
T ss_pred eEeEEccEEEEeCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhhhceEEecccCc-----
Confidence 45799999999998 999999999999999999999986 489999999999875 456778999999632
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ ...++.++ +. + .... . .+| +|||
T Consensus 90 ------~~------------------~~~tv~~~--------l~-~----~~~~------------~----~LS--gGe~ 114 (192)
T cd03232 90 ------HS------------------PNLTVREA--------LR-F----SALL------------R----GLS--VEQR 114 (192)
T ss_pred ------cc------------------cCCcHHHH--------HH-H----HHHH------------h----cCC--HHHh
Confidence 11 00011110 00 0 0000 0 455 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeC-ceEEeec
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDK-GLVVEFD 429 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~-G~i~~~g 429 (602)
||++||||++.+|++|+|||||++||+.+...+.+.+++.. .++|+|++||+++. +.. ||++++|++ |++++.|
T Consensus 115 qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 115 KRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 99999999999999999999999999999999999998865 37899999999984 555 999999999 9998754
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-32 Score=258.96 Aligned_cols=167 Identities=27% Similarity=0.408 Sum_probs=135.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc--CCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII--EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|++ +|++|+|.++|+++.. ..+++.+++++|++.
T Consensus 22 ~~~l~~~~~~i~~G-e~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~----- 92 (194)
T cd03213 22 KQLLKNVSGKAKPG-ELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RSFRKIIGYVPQDDI----- 92 (194)
T ss_pred ccceecceEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---HhhhheEEEccCccc-----
Confidence 34799999999998 999999999999999999999999 9999999999998864 356788999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
++ . ..++.++ +. + . . . .. .+| +|||
T Consensus 93 ------~~-------------~-----~~t~~~~--------i~-~----~---~---~------~~----~LS--~G~~ 117 (194)
T cd03213 93 ------LH-------------P-----TLTVRET--------LM-F----A---A---K------LR----GLS--GGER 117 (194)
T ss_pred ------CC-------------C-----CCcHHHH--------HH-H----H---H---H------hc----cCC--HHHH
Confidence 11 0 0011100 00 0 0 0 0 00 455 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccc-cccc-CCeEEEEeCceEEee
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLN-TIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~-~i~~-~d~i~~l~~G~i~~~ 428 (602)
||++|||||+.+|++++|||||++||+.+.+.+.+.++++. +++|+|++||+++ .+.. ||++++|++|+++..
T Consensus 118 qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 118 KRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999998875 4799999999997 5666 999999999999764
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-32 Score=281.72 Aligned_cols=188 Identities=25% Similarity=0.385 Sum_probs=141.4
Q ss_pred EEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeecc
Q psy3001 217 IVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFI 296 (602)
Q Consensus 217 lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 296 (602)
|+|+||||||||+++|+|+++|++|+|.++|.++...+. .++.++|++|++. ++.
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~-----------l~~------------ 55 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYA-----------LFP------------ 55 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCcc-----------ccC------------
Confidence 589999999999999999999999999999999876654 3678999999732 110
Q ss_pred ccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEec
Q psy3001 297 QVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375 (602)
Q Consensus 297 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDE 375 (602)
. .++.+++.... ...... .....+..+.++.++..+........+| ||||||++|||||+.+|++|||||
T Consensus 56 ~------~tv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--gGq~qRvalaraL~~~p~lllLDE 126 (325)
T TIGR01187 56 H------MTVEENVAFGLKMRKVPR-AEIKPRVLEALRLVQLEEFADRKPHQLS--GGQQQRVALARALVFKPKILLLDE 126 (325)
T ss_pred C------CcHHHHHHHHHhhcCCCH-HHHHHHHHHHHHHcCCcchhcCChhhCC--HHHHHHHHHHHHHHhCCCEEEEeC
Confidence 0 01111110000 000000 0011122233334455555566667788 699999999999999999999999
Q ss_pred ccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhhcc
Q psy3001 376 ATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 376 pts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~~~ 438 (602)
||++||+.++..+.+.|++..+ ++|+|+|||+++++.. ||++++|++|+++..|++++++..+
T Consensus 127 P~s~LD~~~~~~l~~~l~~l~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~ 192 (325)
T TIGR01187 127 PLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEP 192 (325)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCC
Confidence 9999999999999999988643 7899999999999887 9999999999999999999887653
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-32 Score=300.02 Aligned_cols=209 Identities=28% Similarity=0.405 Sum_probs=155.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~ 274 (602)
...|+|+||++.+| ++++|+|+||||||||+|+|+|+++ ++|+|.++|.++...+... +++.++|++|++...+
T Consensus 299 ~~il~~isl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l- 375 (529)
T PRK15134 299 NVVVKNISFTLRPG-ETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSL- 375 (529)
T ss_pred ceeeecceeEEcCC-CEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEccccchhhHHHhhhceEEEEeCchhhc-
Confidence 45789999999988 9999999999999999999999995 8999999999987665433 4678999999742100
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc--cc-hhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CS-NLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
+ .+.++.+++.... .. .... .....+..+.++.++.. .........||
T Consensus 376 --------~------------------~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 427 (529)
T PRK15134 376 --------N------------------PRLNVLQIIEEGLRVHQPTLSA-AQREQQVIAVMEEVGLDPETRHRYPAEFS- 427 (529)
T ss_pred --------C------------------CcccHHHHHHHHHHhccccCCh-HHHHHHHHHHHHHcCCCHHHHhcCCccCC-
Confidence 0 0001111100000 00 0000 00111222333344443 23445566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|||+|||+++.+.. ||++++|++|++++
T Consensus 428 -gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 506 (529)
T PRK15134 428 -GGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVE 506 (529)
T ss_pred -HHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999998743 6899999999999987 99999999999999
Q ss_pred ecChhHHhhcc
Q psy3001 428 FDSPSVLMKNK 438 (602)
Q Consensus 428 ~g~~~~l~~~~ 438 (602)
.|++++++..+
T Consensus 507 ~~~~~~~~~~~ 517 (529)
T PRK15134 507 QGDCERVFAAP 517 (529)
T ss_pred EcCHHHHhcCC
Confidence 99998887643
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-32 Score=266.91 Aligned_cols=194 Identities=26% Similarity=0.357 Sum_probs=139.7
Q ss_pred EecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeec
Q psy3001 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIV 287 (602)
Q Consensus 208 ~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~ 287 (602)
+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++. ..++.++|++|++...+. +
T Consensus 3 i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~--------~---- 64 (223)
T TIGR03771 3 ADKG-ELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWD--------F---- 64 (223)
T ss_pred cCCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCC--------C----
Confidence 4455 999999999999999999999999999999999998753 346789999997432100 0
Q ss_pred ccceeeeccccceeeccccccccc---ccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 288 PVSVLYFFIQVSLIFTEDVKPLII---TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
..+. .+.+..... .......... ..+..+.++.++..+........+| +|||||++|||||
T Consensus 65 ---------~~tv--~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qrv~laral 128 (223)
T TIGR03771 65 ---------PISV--AHTVMSGRTGHIGWLRRPCVAD---FAAVRDALRRVGLTELADRPVGELS--GGQRQRVLVARAL 128 (223)
T ss_pred ---------CccH--HHHHHhccccccccccCCcHHH---HHHHHHHHHHhCCchhhcCChhhCC--HHHHHHHHHHHHH
Confidence 0000 000000000 0000000000 1112222333444444444555677 6999999999999
Q ss_pred hhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 365 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
+++|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+++++ +|+++..++++++..
T Consensus 129 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 129 ATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 99999999999999999999999999998875 47899999999999887 9999999 899999998888754
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.1e-32 Score=267.83 Aligned_cols=190 Identities=25% Similarity=0.421 Sum_probs=142.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| +..++|++|++...
T Consensus 17 ~~vl~~vs~~i~~G-e~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~v~q~~~~~----- 79 (251)
T PRK09544 17 RRVLSDVSLELKPG-KILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGYVPQKLYLD----- 79 (251)
T ss_pred ceEEEeEEEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEEeccccccc-----
Confidence 35899999999998 99999999999999999999999999999999987 24699999974210
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+.+ . .++.+.+.. ..... ..+..+.++.++...........+| +|||||
T Consensus 80 --~~l--------------~------~~~~~~~~~--~~~~~-----~~~~~~~l~~~gl~~~~~~~~~~LS--gGq~qr 128 (251)
T PRK09544 80 --TTL--------------P------LTVNRFLRL--RPGTK-----KEDILPALKRVQAGHLIDAPMQKLS--GGETQR 128 (251)
T ss_pred --ccc--------------C------hhHHHHHhc--ccccc-----HHHHHHHHHHcCChHHHhCChhhCC--HHHHHH
Confidence 000 0 000000000 00000 0111222223333333444556677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
++|||||+.+|++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++ ++++.|+++++
T Consensus 129 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~ 207 (251)
T PRK09544 129 VLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVV 207 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHH
Confidence 9999999999999999999999999999999999988643 7899999999999977 999999965 78899988887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 208 ~~ 209 (251)
T PRK09544 208 SL 209 (251)
T ss_pred hC
Confidence 54
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.98 E-value=8.5e-32 Score=258.50 Aligned_cols=177 Identities=25% Similarity=0.353 Sum_probs=136.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
+...++|+||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++.... ...++.++|++|++.
T Consensus 19 ~~~il~~~s~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~~~~i~~~~q~~~--- 93 (202)
T cd03233 19 KIPILKDFSGVVKPG-EMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKYPGEIIYVSEEDV--- 93 (202)
T ss_pred CceeeeeEEEEECCC-cEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhhcceEEEEecccc---
Confidence 456899999999998 9999999999999999999999999 89999999999987654 356778999999621
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..++.++ +. +... .. .......+| +|
T Consensus 94 --------~~~------------------~~tv~~~--------l~-~~~~----~~----------~~~~~~~LS--~G 122 (202)
T cd03233 94 --------HFP------------------TLTVRET--------LD-FALR----CK----------GNEFVRGIS--GG 122 (202)
T ss_pred --------cCC------------------CCcHHHH--------Hh-hhhh----hc----------cccchhhCC--HH
Confidence 110 0011111 00 0000 00 122334566 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEee-eccccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIA-HRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~it-H~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||++|||||+++|++|||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+.. ||++++|++|+++..|
T Consensus 123 e~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 123 ERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999998743 46666655 55677766 9999999999997643
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-32 Score=247.07 Aligned_cols=206 Identities=23% Similarity=0.330 Sum_probs=165.2
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++++|..+++| .+++++||||||||||+.+++++.++++|+|.++|.++.+++..++.+.++++-|+.....
T Consensus 13 ~~~vl~~isl~i~~g-~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSILkQ~N~i~~--- 88 (252)
T COG4604 13 TKVVLDDVSLDIPKG-GITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSILKQENHINS--- 88 (252)
T ss_pred CEEeeccceeeecCC-ceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHHHhhchhhh---
Confidence 467899999999998 9999999999999999999999999999999999999999999999999999999521110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccc----h-hHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS----N-LQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.-++++++.+.... . -.+.....++. ++-+.+.++-.++-.+||
T Consensus 89 --------------------------rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~a---ieyl~L~~l~dryLd~LS-- 137 (252)
T COG4604 89 --------------------------RLTVRDLVGFGRFPYSQGRLTKEDRRIINEA---IEYLHLEDLSDRYLDELS-- 137 (252)
T ss_pred --------------------------eeEHHHHhhcCCCcccCCCCchHHHHHHHHH---HHHhcccchHHHhHHhcc--
Confidence 00111111111100 0 01111222222 334445555666777788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||.-+|..++++.+.++||||.++||......+++.++++.+ ++|+++|-||..+... +|+|+-|++|+++..
T Consensus 138 GGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~ 217 (252)
T COG4604 138 GGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQ 217 (252)
T ss_pred cchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEec
Confidence 5999999999999999999999999999999999999999998754 7999999999999988 999999999999999
Q ss_pred cChhHHhhc
Q psy3001 429 DSPSVLMKN 437 (602)
Q Consensus 429 g~~~~l~~~ 437 (602)
|+++++++.
T Consensus 218 G~~~eii~~ 226 (252)
T COG4604 218 GSPDEIIQP 226 (252)
T ss_pred CCHHHhcCH
Confidence 999998764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.2e-31 Score=273.49 Aligned_cols=218 Identities=22% Similarity=0.312 Sum_probs=146.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-----CCCceEEECCeecCCC--ChHHHhhccceecccchhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-----~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~~ 272 (602)
.++++||++.+| ++++|+|+||||||||+++|+|+++ |++|+|.++|.++... +...+++.++|++|++.
T Consensus 60 iL~~is~~i~~G-e~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~-- 136 (305)
T PRK14264 60 ALKGVSMDIPEK-SVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLVELRKRVGMVFQSPN-- 136 (305)
T ss_pred eeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHHHHhhceEEEccCCc--
Confidence 455555665566 9999999999999999999999986 6899999999988643 35567889999999742
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc----CCcccccCCcC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR----SPIYSHFGETV 348 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~l 348 (602)
++...+.....+.. . ........... .............+..+.+..++. ..........+
T Consensus 137 ---------l~~~tv~enl~~~~-~----~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 137 ---------PFPKSIRENISYGP-R----KHGDINTGLLA-RLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred ---------cccccHHHHHHhHH-h----hcccccccccc-cccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 11000000000000 0 00000000000 000000000000111111112221 11234445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeE-EEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRV-LVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i-~~l~~G~i~ 426 (602)
| +|||||++|||||+++|++|||||||++||+.+...+.+.|+++.++.|+|++||+++.+.. ||++ ++|++|+++
T Consensus 202 S--gGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~ 279 (305)
T PRK14264 202 S--GGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELV 279 (305)
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEE
Confidence 7 69999999999999999999999999999999999999999988667899999999999987 9997 578999999
Q ss_pred eecChhHHhhc
Q psy3001 427 EFDSPSVLMKN 437 (602)
Q Consensus 427 ~~g~~~~l~~~ 437 (602)
+.|+++++...
T Consensus 280 ~~g~~~~~~~~ 290 (305)
T PRK14264 280 EYDDTDKIFEN 290 (305)
T ss_pred EeCCHHHHHhC
Confidence 99998887653
|
|
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.3e-32 Score=263.26 Aligned_cols=185 Identities=25% Similarity=0.260 Sum_probs=134.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++... .....+.+..
T Consensus 35 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~-----~~~~~~~~~~--------- 99 (224)
T cd03220 35 FWALKDVSFEVPRG-ERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL-----GLGGGFNPEL--------- 99 (224)
T ss_pred eEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh-----cccccCCCCC---------
Confidence 56899999999998 99999999999999999999999999999999999875311 1111111110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-c-c-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-C-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
++.+++... . . ........ +..+.++.++..+........+| +||
T Consensus 100 ---------------------------tv~enl~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gG~ 147 (224)
T cd03220 100 ---------------------------TGRENIYLNGRLLGLSRKEIDE---KIDEIIEFSELGDFIDLPVKTYS--SGM 147 (224)
T ss_pred ---------------------------cHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHcCChhhhhCChhhCC--HHH
Confidence 011100000 0 0 00001011 11122223333333444455677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||++||||++++|+++||||||++||+.++..+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 148 ~qrv~laral~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 148 KARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999998864 46899999999999987 9999999999997654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=6.9e-32 Score=295.20 Aligned_cols=207 Identities=24% Similarity=0.314 Sum_probs=151.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-CCCceEEECCeecCCCCh-HHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+|+|+|+++ |++|+|.++|.++...+. ..+++.++|++|++...
T Consensus 275 ~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~--- 350 (506)
T PRK13549 275 IKRVDDVSFSLRRG-EILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRD--- 350 (506)
T ss_pred cccccceeeEEcCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCEEeCcchhhC---
Confidence 34789999999998 9999999999999999999999999 599999999998865443 34567899999974210
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc---cch---hHHHHHHHHHHHHHHhhcccC-CcccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSN---LQRFYVATSRQLKRLESVSRS-PIYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~l 348 (602)
.++. +.++.+++.... ... ... .....+..+.++.++.. .........|
T Consensus 351 -----~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~L 406 (506)
T PRK13549 351 -----GIVP------------------VMGVGKNITLAALDRFTGGSRIDD-AAELKTILESIQRLKVKTASPELAIARL 406 (506)
T ss_pred -----CCcC------------------CCCHHHHhhhhhhhhhccCcccCh-HHHHHHHHHHHHhcCccCCCcccccccC
Confidence 0000 001111000000 000 000 00111222333344443 2344555677
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.++.+. +++|||++||+++++.. ||++++|++|+++
T Consensus 407 S--gG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~ 484 (506)
T PRK13549 407 S--GGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLK 484 (506)
T ss_pred C--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999999
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
..++.+++
T Consensus 485 ~~~~~~~~ 492 (506)
T PRK13549 485 GDLINHNL 492 (506)
T ss_pred EEeccccC
Confidence 88877654
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.98 E-value=1e-31 Score=257.97 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=137.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|++|++....
T Consensus 13 ~~~l~~isl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~~~~---- 86 (201)
T cd03231 13 RALFSGLSFTLAAG-EALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYLGHAPGIKT---- 86 (201)
T ss_pred ceeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEeccccccCC----
Confidence 35799999999998 999999999999999999999999999999999999876543 467789999999732110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+.++.+++....... ...+..+.++.++..+........+| +|||||
T Consensus 87 -------------------------~~tv~e~l~~~~~~~------~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~qr 133 (201)
T cd03231 87 -------------------------TLSVLENLRFWHADH------SDEQVEEALARVGLNGFEDRPVAQLS--AGQQRR 133 (201)
T ss_pred -------------------------CcCHHHHHHhhcccc------cHHHHHHHHHHcCChhhhcCchhhCC--HHHHHH
Confidence 011111110000000 01111122223333333344455667 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
++|||||+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+...+.. +++++++
T Consensus 134 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 134 VALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999999999999998764 47899999999888877 8999877
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.2e-32 Score=256.46 Aligned_cols=196 Identities=19% Similarity=0.321 Sum_probs=152.2
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----CChHHHhhccceecccchhhhhhccCC
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----LGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
++|..+.. -++||-|+||||||||+|+|+|+..|++|.|.+||.-+.+ +....-+++||||+|+..
T Consensus 17 a~~~~p~~-GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDAR--------- 86 (352)
T COG4148 17 ANFTLPAR-GITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDAR--------- 86 (352)
T ss_pred EeccCCCC-ceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccc---------
Confidence 44444432 6899999999999999999999999999999999986644 334456789999999843
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+|. .++.. .++....... .....++. ...++..++...++.+||| |||||||
T Consensus 87 --LFp------------H~tVr------gNL~YG~~~~---~~~~fd~i---v~lLGI~hLL~R~P~~LSG--GEkQRVA 138 (352)
T COG4148 87 --LFP------------HYTVR------GNLRYGMWKS---MRAQFDQL---VALLGIEHLLDRYPGTLSG--GEKQRVA 138 (352)
T ss_pred --ccc------------ceEEe------cchhhhhccc---chHhHHHH---HHHhCcHHHHhhCCCccCc--chhhHHH
Confidence 221 11111 1110000000 11112222 2356677788899999995 9999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|+|||+.+|++|++|||.|+||.....++.-.+.++.+ +..|++|||.++++.. ||+|++|++|++.++|..++++.
T Consensus 139 IGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~ 218 (352)
T COG4148 139 IGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218 (352)
T ss_pred HHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhc
Confidence 99999999999999999999999999999999988765 4789999999999998 99999999999999999999876
Q ss_pred c
Q psy3001 437 N 437 (602)
Q Consensus 437 ~ 437 (602)
.
T Consensus 219 ~ 219 (352)
T COG4148 219 S 219 (352)
T ss_pred C
Confidence 5
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.98 E-value=7.6e-32 Score=294.49 Aligned_cols=205 Identities=21% Similarity=0.315 Sum_probs=152.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+.. .+++.++|++|++...
T Consensus 267 ~l~~vsl~i~~G-e~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~------ 339 (501)
T PRK10762 267 GVNDVSFTLRKG-EILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRD------ 339 (501)
T ss_pred CcccceEEEcCC-cEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEecCccccC------
Confidence 378999999998 99999999999999999999999999999999999998766543 4567899999974200
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc---cch----hHHHHHHHHHHHHHHhhcccC-CcccccCCcCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSN----LQRFYVATSRQLKRLESVSRS-PIYSHFGETVTG 350 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsg 350 (602)
.++. +.++.+++.... ... ... .....+..+.++.++.. .........+|
T Consensus 340 --~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~LS- 397 (501)
T PRK10762 340 --GLVL------------------GMSVKENMSLTALRYFSRAGGSLKH-ADEQQAVSDFIRLFNIKTPSMEQAIGLLS- 397 (501)
T ss_pred --CCcC------------------CCcHHHHhhhhhhhhhcccccccCH-HHHHHHHHHHHHhcCCCCCCccCchhhCC-
Confidence 0000 000111000000 000 000 00111122333344442 34455566777
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||++||+++++.. ||++++|++|+++..
T Consensus 398 -gGekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~ 476 (501)
T PRK10762 398 -GGNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGE 476 (501)
T ss_pred -HHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEE
Confidence 699999999999999999999999999999999999999998874 47899999999999988 999999999999988
Q ss_pred cChhHH
Q psy3001 429 DSPSVL 434 (602)
Q Consensus 429 g~~~~l 434 (602)
++.+++
T Consensus 477 ~~~~~~ 482 (501)
T PRK10762 477 FTREQA 482 (501)
T ss_pred eccccC
Confidence 876654
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=293.81 Aligned_cols=201 Identities=20% Similarity=0.286 Sum_probs=148.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccch--hhhhhc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLA--TIFVIC 276 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~--~~~~~~ 276 (602)
.++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+. ..+++.++|++|++. ..+
T Consensus 278 ~l~~isl~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 353 (510)
T PRK09700 278 KVRDISFSVCRG-EILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFF--- 353 (510)
T ss_pred cccceeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcEEccCccccCCCc---
Confidence 689999999988 9999999999999999999999999999999999998865543 356678999999731 110
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc------c-c--hhHHHHHHHHHHHHHHhhcccC-CcccccCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF------C-S--NLQRFYVATSRQLKRLESVSRS-PIYSHFGE 346 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 346 (602)
+. .++.+++.... . . ..........+..+.++.++.. ........
T Consensus 354 ---~~----------------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 408 (510)
T PRK09700 354 ---PN----------------------FSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNIT 408 (510)
T ss_pred ---CC----------------------CcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccc
Confidence 00 00000000000 0 0 0000000011122333344443 33455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.|| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||+|||+++.+.. ||++++|++|+
T Consensus 409 ~LS--gGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~ 486 (510)
T PRK09700 409 ELS--GGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGR 486 (510)
T ss_pred cCC--hHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCE
Confidence 777 599999999999999999999999999999999999999998864 47899999999999987 99999999999
Q ss_pred EEeecCh
Q psy3001 425 VVEFDSP 431 (602)
Q Consensus 425 i~~~g~~ 431 (602)
++..++.
T Consensus 487 i~~~~~~ 493 (510)
T PRK09700 487 LTQILTN 493 (510)
T ss_pred EEEEecC
Confidence 9887655
|
|
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.4e-31 Score=264.97 Aligned_cols=193 Identities=17% Similarity=0.220 Sum_probs=141.2
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +++++|.+...
T Consensus 36 ~~~il~~is~~i~~G-e~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~---- 97 (264)
T PRK13546 36 TFFALDDISLKAYEG-DVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLS---- 97 (264)
T ss_pred ceEEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCC----
Confidence 346899999999998 999999999999999999999999999999999984 22333321100
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+ ..+ +.+++... .............. .+......+........+| +|
T Consensus 98 ---~----------------~~t------v~enl~~~~~~~~~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~LS--~G 147 (264)
T PRK13546 98 ---G----------------QLT------GIENIEFKMLCMGFKRKEIKAMTPK---IIEFSELGEFIYQPVKKYS--SG 147 (264)
T ss_pred ---C----------------CCc------HHHHHHHHHHHcCCCHHHHHHHHHH---HHHHcCCchhhcCCcccCC--HH
Confidence 0 000 00000000 00000111111111 1122233333444556677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
|+||++||||++.+|++|||||||++||+.+...+.+.+.++. .++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 148 q~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~ 227 (264)
T PRK13546 148 MRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGEL 227 (264)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998764 47899999999999987 999999999999999998
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
+++...
T Consensus 228 ~~~~~~ 233 (264)
T PRK13546 228 DDVLPK 233 (264)
T ss_pred HHHHHH
Confidence 887664
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-31 Score=293.35 Aligned_cols=206 Identities=22% Similarity=0.277 Sum_probs=151.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+|+|+|+++|++|+|.++|.++...+. ...++.++|++|++...
T Consensus 268 ~l~~isl~i~~G-e~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~------ 340 (501)
T PRK11288 268 LREPISFSVRAG-EIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAE------ 340 (501)
T ss_pred cccceeEEEeCC-cEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcCcCHhhC------
Confidence 689999999998 9999999999999999999999999999999999998865433 34567899999975310
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc---ccc--h-hHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCS--N-LQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGN 351 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~--~-~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs 351 (602)
.++. +.++.+++... ... . .........+..+.++.++.. .........||
T Consensus 341 --~~~~------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS-- 398 (501)
T PRK11288 341 --GIIP------------------VHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLS-- 398 (501)
T ss_pred --CCcC------------------CCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCC--
Confidence 0110 00010000000 000 0 000000011122233344432 33455556777
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||++||+++++.. ||++++|++|+++..+
T Consensus 399 gGq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~ 478 (501)
T PRK11288 399 GGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGEL 478 (501)
T ss_pred HHHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEE
Confidence 699999999999999999999999999999999999999998864 47899999999999988 9999999999999988
Q ss_pred ChhHH
Q psy3001 430 SPSVL 434 (602)
Q Consensus 430 ~~~~l 434 (602)
++++.
T Consensus 479 ~~~~~ 483 (501)
T PRK11288 479 AREQA 483 (501)
T ss_pred ccccC
Confidence 77654
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=257.66 Aligned_cols=186 Identities=22% Similarity=0.225 Sum_probs=137.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.+++++|.+.
T Consensus 14 ~~~l~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~~~~~~------- 84 (204)
T PRK13538 14 RILFSGLSFTLNAG-ELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYLGHQPG------- 84 (204)
T ss_pred EEEEecceEEECCC-cEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEeCCccc-------
Confidence 35799999999998 999999999999999999999999999999999999887654 356778999998632
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..++.+++.... .... ....+..+.++.++..+........+| +||||
T Consensus 85 ----~~~------------------~~tv~e~l~~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~~~~LS--~G~~q 136 (204)
T PRK13538 85 ----IKT------------------ELTALENLRFYQRLHGP----GDDEALWEALAQVGLAGFEDVPVRQLS--AGQQR 136 (204)
T ss_pred ----cCc------------------CCcHHHHHHHHHHhcCc----cHHHHHHHHHHHcCCHHHhhCChhhcC--HHHHH
Confidence 110 001111100000 0000 001111222333333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
|++||||++++|++++|||||++||+.+...+.+.|+++. ++.|+|++||+++++.. .+|++++
T Consensus 137 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 137 RVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 9999999999999999999999999999999999998864 46899999999999987 5677766
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.9e-32 Score=241.68 Aligned_cols=202 Identities=24% Similarity=0.307 Sum_probs=151.5
Q ss_pred CCCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 193 ~~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
|+..+...++|+|+++.+| +.++++||||||||||+++++|+.+|+.|+|.+||.++..-+. .=|+|+|+....
T Consensus 13 y~g~~~~~le~vsL~ia~g-e~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergvVFQ~~~Ll 86 (259)
T COG4525 13 YEGKPRSALEDVSLTIASG-ELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGVVFQNEALL 86 (259)
T ss_pred cCCcchhhhhccceeecCC-CEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----cceeEeccCccc
Confidence 4444567899999999998 9999999999999999999999999999999999998876543 237888874322
Q ss_pred hhhccCCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
||+. +.+++.+. ......+ ..+.....+.+..+++...-.++.-.+|
T Consensus 87 -------PWl~----------------------~~dNvafgL~l~Gi~k-~~R~~~a~q~l~~VgL~~~~~~~i~qLS-- 134 (259)
T COG4525 87 -------PWLN----------------------VIDNVAFGLQLRGIEK-AQRREIAHQMLALVGLEGAEHKYIWQLS-- 134 (259)
T ss_pred -------hhhH----------------------HHHHHHHHHHhcCCCH-HHHHHHHHHHHHHhCcccccccceEeec--
Confidence 3322 01110000 0001111 1112222333445566555566666788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe--CceEE
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD--KGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~--~G~i~ 426 (602)
||||||+.|||||..+|+.|+||||+++||.-+++.++..|-+.. .|+.+++|||++++..- +++++||. .|+|+
T Consensus 135 GGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv 214 (259)
T COG4525 135 GGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVV 214 (259)
T ss_pred chHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceee
Confidence 599999999999999999999999999999999999999887653 37999999999999877 99999997 68998
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
+.-++.
T Consensus 215 ~~~~~d 220 (259)
T COG4525 215 ERLPLD 220 (259)
T ss_pred EecCCC
Confidence 765544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-31 Score=292.55 Aligned_cols=208 Identities=24% Similarity=0.358 Sum_probs=152.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH-HhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~-~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+... .++.++|+||++...
T Consensus 278 ~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~------ 350 (510)
T PRK15439 278 GFRNISLEVRAG-EILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDRQSS------ 350 (510)
T ss_pred CccceeEEEcCC-cEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCChhhC------
Confidence 488999999998 999999999999999999999999999999999999988766554 456899999974210
Q ss_pred CceeEeeecccceeeeccccceeeccccccc-cc-ccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL-II-TPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
.++. ..+.. +.+... .. .......... ..+..+.++.++.. .........+| ||||
T Consensus 351 --~l~~------------~~t~~--~~l~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--gG~k 409 (510)
T PRK15439 351 --GLYL------------DAPLA--WNVCALTHNRRGFWIKPARE---NAVLERYRRALNIKFNHAEQAARTLS--GGNQ 409 (510)
T ss_pred --CccC------------CCcHH--HHHHhhhhhhhccccChHHH---HHHHHHHHHHcCCCCCCccCccccCC--cHHH
Confidence 0000 00000 000000 00 0000000000 11122233344443 34455566777 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. ++.|||+|||+++++.. ||++++|++|+++..+++++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998864 47899999999999988 99999999999998887765
Q ss_pred Hh
Q psy3001 434 LM 435 (602)
Q Consensus 434 l~ 435 (602)
+.
T Consensus 490 ~~ 491 (510)
T PRK15439 490 IN 491 (510)
T ss_pred CC
Confidence 53
|
|
| >KOG0058|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-31 Score=284.08 Aligned_cols=121 Identities=32% Similarity=0.571 Sum_probs=116.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+||+|||+|+||||++++|.++|+|++|+|.+||+||+.++...+|++||+|.|||.||++||+|||.
T Consensus 484 lk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~ 563 (716)
T KOG0058|consen 484 LKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIA 563 (716)
T ss_pred hcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++- ..++|||.+|+++++.++|+..+|+||+|.|||+|+.|
T Consensus 564 YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 564 YGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred cCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 664 46999999999999999999999999999999999875
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.3e-31 Score=264.35 Aligned_cols=193 Identities=23% Similarity=0.368 Sum_probs=138.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 51 ~vL~~vs~~i~~G-e~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~i~yv~q~~~-------- 108 (282)
T cd03291 51 PVLKNINLKIEKG-EMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------RISFSSQFSW-------- 108 (282)
T ss_pred cceeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------EEEEEeCccc--------
Confidence 4788888888888 99999999999999999999999999999999988 3899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhcc--cCCcccccCCcCCCChhh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESVS--RSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~~~~~~~~~lsgs~Gq 354 (602)
++ ..+ +.+++................ ...+.+.... ........+..+| +||
T Consensus 109 ---l~-------------~~t------v~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LS--gGq 164 (282)
T cd03291 109 ---IM-------------PGT------IKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLS--GGQ 164 (282)
T ss_pred ---cc-------------ccC------HHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCC--HHH
Confidence 11 101 111100000000000000000 0001111110 0111223345666 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.+ +...++.|+|++||+++.+..||++++|++|+++..|++++
T Consensus 165 ~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 244 (282)
T cd03291 165 RARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 244 (282)
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999888754 55555789999999999987799999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 245 ~~~~ 248 (282)
T cd03291 245 LQSL 248 (282)
T ss_pred HHhc
Confidence 7653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.1e-31 Score=292.53 Aligned_cols=205 Identities=23% Similarity=0.408 Sum_probs=149.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEEC-Cee---cCCCC---hHHHhhccceecccch
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID-GVD---IRTLG---LHTLRSRLTIIPQVLA 270 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~-g~~---~~~~~---~~~~~~~i~~v~Q~~~ 270 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++ |.+ +...+ ...+++.++|++|++.
T Consensus 297 ~~il~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 375 (520)
T TIGR03269 297 VKAVDNVSLEVKEG-EIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYD 375 (520)
T ss_pred ceEEeeEEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcc
Confidence 35799999999988 9999999999999999999999999999999996 643 33332 2245678999999732
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-----cccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~ 345 (602)
. +. ..++.+++........... ....+..+.++.++... ......
T Consensus 376 l-----------~~------------------~~tv~e~l~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~~~ 425 (520)
T TIGR03269 376 L-----------YP------------------HRTVLDNLTEAIGLELPDE-LARMKAVITLKMVGFDEEKAEEILDKYP 425 (520)
T ss_pred c-----------CC------------------CCcHHHHHHHHHHcCCCHH-HHHHHHHHHHHhCCCCCccchhhhhCCh
Confidence 1 10 0011111000000000000 01112222333444332 234556
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..|| ||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + +.|||+|||+++.+.. ||++++|++
T Consensus 426 ~~LS--gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~ 503 (520)
T TIGR03269 426 DELS--EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503 (520)
T ss_pred hhCC--HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6777 699999999999999999999999999999999999999998864 3 6899999999999987 999999999
Q ss_pred ceEEeecChhHHh
Q psy3001 423 GLVVEFDSPSVLM 435 (602)
Q Consensus 423 G~i~~~g~~~~l~ 435 (602)
|++++.|+++++.
T Consensus 504 G~i~~~g~~~~~~ 516 (520)
T TIGR03269 504 GKIVKIGDPEEIV 516 (520)
T ss_pred CEEEEECCHHHHH
Confidence 9999988877764
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-31 Score=255.74 Aligned_cols=179 Identities=27% Similarity=0.378 Sum_probs=130.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++++| ++++|+|+||||||||+++|+|+++|++|+|.++| .++|++|++.
T Consensus 19 ~il~~~s~~i~~G-~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~-------- 76 (204)
T cd03250 19 FTLKDINLEVPKG-ELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPW-------- 76 (204)
T ss_pred ceeeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCch--------
Confidence 5899999999998 99999999999999999999999999999999998 5899999842
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH---HHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ---LKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
++ ..+ +.+++....... ........+. .+.+... +...........+| +|
T Consensus 77 ---l~-------------~~t------~~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS--~G 131 (204)
T cd03250 77 ---IQ-------------NGT------IRENILFGKPFD-EERYEKVIKACALEPDLEILPDGDLTEIGEKGINLS--GG 131 (204)
T ss_pred ---hc-------------cCc------HHHHhccCCCcC-HHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCC--HH
Confidence 22 111 111110000000 0000010100 1111111 12222344455677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH-HHHHh-ccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQS-TIRSE-FAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~-~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
||||++|||||+.+|++++|||||++||+.+.+.+.+ .++.. .++.|||++||+++.+..||++++|++|+
T Consensus 132 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 132 QKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999999999999999999988887 45554 34689999999999988899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=256.97 Aligned_cols=186 Identities=21% Similarity=0.239 Sum_probs=137.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+++||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|+++... ..++.++|++|++.
T Consensus 24 ~~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~~~q~~~------- 92 (214)
T PRK13543 24 EPVFGPLDFHVDAG-EALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAYLGHLPG------- 92 (214)
T ss_pred ceeeecceEEECCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEEeecCcc-------
Confidence 35799999999998 99999999999999999999999999999999999988642 34567999998632
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ......+.+..++...........+| +||||
T Consensus 93 ----~~~------------~~------t~~e~l~~~~~~~~~~----~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 144 (214)
T PRK13543 93 ----LKA------------DL------STLENLHFLCGLHGRR----AKQMPGSALAIVGLAGYEDTLVRQLS--AGQKK 144 (214)
T ss_pred ----ccc------------CC------cHHHHHHHHHHhcCCc----HHHHHHHHHHHcCChhhccCChhhCC--HHHHH
Confidence 110 00 011100000 000000 00111122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
|++||||++.+|++|+|||||++||+.+.+++.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 145 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999999999998753 46899999999999988 999999864
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-31 Score=260.43 Aligned_cols=190 Identities=24% Similarity=0.347 Sum_probs=135.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEEC--Ce--ecCCCChHH---H-hhccceecccc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID--GV--DIRTLGLHT---L-RSRLTIIPQVL 269 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~--g~--~~~~~~~~~---~-~~~i~~v~Q~~ 269 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++ |. ++...+... + ++.++|++|++
T Consensus 21 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~ 99 (224)
T TIGR02324 21 LPVLKNVSLTVNAG-ECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFL 99 (224)
T ss_pred eEEEecceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCHHHHHHHHhcceEEEeccc
Confidence 35899999999998 9999999999999999999999999999999998 42 555555443 2 45799999974
Q ss_pred hhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC-cccccCCc
Q psy3001 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP-IYSHFGET 347 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~ 347 (602)
.. +. +.++.+++.... ....... ....+..+.++.++... ........
T Consensus 100 ~~-----------~~------------------~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~~ 149 (224)
T TIGR02324 100 RV-----------IP------------------RVSALEVVAEPLLERGVPRE-AARARARELLARLNIPERLWHLPPAT 149 (224)
T ss_pred cc-----------CC------------------CccHHHHHHHHHHHcCCCHH-HHHHHHHHHHHHcCCchhhhhCCccc
Confidence 21 10 000000000000 0000000 00111222233333332 22334566
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
+| +|||||++|||||+.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+.. ||+++.+
T Consensus 150 LS--~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FS--GGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 77 699999999999999999999999999999999999999998864 47899999999999976 9999876
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=289.86 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=148.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCCCCh-HHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++| ++|+|.++|.++...+. ..+++.++|++|++...
T Consensus 273 ~~~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~--- 348 (500)
T TIGR02633 273 RKRVDDVSFSLRRG-EILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGIAMVPEDRKRH--- 348 (500)
T ss_pred ccccccceeEEeCC-cEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCCEEcCcchhhC---
Confidence 34799999999998 99999999999999999999999995 89999999998865443 45678899999984210
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc----cc--chhHHHHHHHHHHHHHHhhcccCC-cccccCCcC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FC--SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETV 348 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~l 348 (602)
.++. . .++.+++... .. ..... .....+..+.++.++... ........+
T Consensus 349 -----~l~~------------~------~tv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~~L 404 (500)
T TIGR02633 349 -----GIVP------------I------LGVGKNITLSVLKSFCFKMRIDA-AAELQIIGSAIQRLKVKTASPFLPIGRL 404 (500)
T ss_pred -----CcCC------------C------CCHHHHhcchhhhhhccCCcCCH-HHHHHHHHHHHHhcCccCCCccCccccC
Confidence 0000 0 0000000000 00 00000 000111222233333322 234445567
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.++.+. ++.|||++||+++++.. ||++++|++|+++
T Consensus 405 S--gGqkqrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~ 482 (500)
T TIGR02633 405 S--GGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLK 482 (500)
T ss_pred C--HHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEE
Confidence 7 699999999999999999999999999999999999999998864 47899999999999987 9999999999998
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
...+..
T Consensus 483 ~~~~~~ 488 (500)
T TIGR02633 483 GDFVNH 488 (500)
T ss_pred EEEccc
Confidence 766443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.7e-31 Score=256.97 Aligned_cols=192 Identities=24% Similarity=0.362 Sum_probs=136.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~~~~~ 274 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ...++.++|++|++.
T Consensus 15 ~il~~vs~~i~~G-e~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~---- 89 (218)
T cd03290 15 ATLSNINIRIPTG-QLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPW---- 89 (218)
T ss_pred cceeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCc----
Confidence 4799999999998 9999999999999999999999999999999999998765542 235678999999742
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHH---HHHhh--cccCCcccccCCcCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL---KRLES--VSRSPIYSHFGETVT 349 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~l~~--~~~~~~~~~~~~~ls 349 (602)
++ .. ++.+++.......... .....+.+ +.+.. .+...........+|
T Consensus 90 -------~~-------------~~------t~~~nl~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS 142 (218)
T cd03290 90 -------LL-------------NA------TVEENITFGSPFNKQR-YKAVTDACSLQPDIDLLPFGDQTEIGERGINLS 142 (218)
T ss_pred -------cc-------------cc------cHHHHHhhcCcCCHHH-HHHHHHHhCcHHHHHhCcCccccCcccCCCcCC
Confidence 11 10 1111110000000000 00111111 00100 001111223445667
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHH--HHHHhc-cccEEEEeeecccccccCCeEEEEeCce
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS--TIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~--~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+|||||++||||++.+|++|||||||++||+.+...+.+ .++... .+.|+|++||+++.+..||++++|++|.
T Consensus 143 --~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 143 --GGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred --HHHHHHHHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 699999999999999999999999999999999998887 555443 3689999999999987799999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.4e-31 Score=316.49 Aligned_cols=204 Identities=20% Similarity=0.288 Sum_probs=156.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++++||++.
T Consensus 943 k~aL~~lsl~I~~G-ei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~IG~~pQ~~~------- 1013 (2272)
T TIGR01257 943 RPAVDRLNITFYEN-QITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSLGMCPQHNI------- 1013 (2272)
T ss_pred ceEEEeeEEEEcCC-cEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcEEEEecCCc-------
Confidence 34566667766666 9999999999999999999999999999999999999864 45667889999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. ..++.+.+... ....... .....+..+.++.+++.........+|| |||||
T Consensus 1014 ----L~~------------------~LTV~E~L~f~~~lkg~~~-~~~~~~v~~lL~~vgL~~~~~~~~~~LS--GGqKQ 1068 (2272)
T TIGR01257 1014 ----LFH------------------HLTVAEHILFYAQLKGRSW-EEAQLEMEAMLEDTGLHHKRNEEAQDLS--GGMQR 1068 (2272)
T ss_pred ----CCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchhhcCChhhCC--HHHHH
Confidence 110 00111110000 0000000 0011122333445555555566667788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
|++|||||+.+|++|+|||||++||+.+++.+++.|++..+++|||++||+++++.. ||||++|++|+++..|++.++.
T Consensus 1069 RLsLArALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk 1148 (2272)
T TIGR01257 1069 KLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLK 1148 (2272)
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHH
Confidence 999999999999999999999999999999999999998778999999999999987 9999999999999999988775
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-31 Score=245.69 Aligned_cols=150 Identities=31% Similarity=0.388 Sum_probs=124.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +.++|++|++.
T Consensus 15 ~~l~~i~l~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~q~~~-------- 74 (166)
T cd03223 15 VLLKDLSFEIKPG-DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFLPQRPY-------- 74 (166)
T ss_pred eeeecCeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEECCCCc--------
Confidence 4799999999998 999999999999999999999999999999999873 57899999731
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ +.++.+++ . . . ....+| +|||||+
T Consensus 75 ---~~-------------------~~tv~~nl--------~--------------~-~-------~~~~LS--~G~~~rv 100 (166)
T cd03223 75 ---LP-------------------LGTLREQL--------I--------------Y-P-------WDDVLS--GGEQQRL 100 (166)
T ss_pred ---cc-------------------cccHHHHh--------h--------------c-c-------CCCCCC--HHHHHHH
Confidence 11 00111110 0 0 0 234566 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
+|||||+.+|+++||||||++||+.+.+.+.+.+++. +.|+|++||+++....||++++|+++.
T Consensus 101 ~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 101 AFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred HHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999999999999999876 589999999998765599999998764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.4e-31 Score=252.84 Aligned_cols=183 Identities=18% Similarity=0.213 Sum_probs=134.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. ....+++.++|++|++.
T Consensus 14 ~~il~~~s~~i~~G-e~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~~q~~~------- 84 (200)
T PRK13540 14 QPLLQQISFHLPAG-GLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFVGHRSG------- 84 (200)
T ss_pred eeEEeeeeEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEeccccc-------
Confidence 35899999999998 9999999999999999999999999999999999998864 34567788999999632
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
++. .. ++.+++......... ..+..+.++.++...........+| +||+||
T Consensus 85 ----~~~------------~~------tv~~~~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~r 135 (200)
T PRK13540 85 ----INP------------YL------TLRENCLYDIHFSPG-----AVGITELCRLFSLEHLIDYPCGLLS--SGQKRQ 135 (200)
T ss_pred ----cCc------------CC------CHHHHHHHHHhcCcc-----hHHHHHHHHHcCCchhhhCChhhcC--HHHHHH
Confidence 110 00 111110000000000 0011122222222222233334566 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~ 418 (602)
++||||++++|++|||||||++||+.+...+.+.|++.. ++.|+|++||+.+.+..||.-.
T Consensus 136 v~laral~~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~ 197 (200)
T PRK13540 136 VALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEE 197 (200)
T ss_pred HHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhh
Confidence 999999999999999999999999999999999999863 4789999999999998888643
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=275.03 Aligned_cols=192 Identities=20% Similarity=0.223 Sum_probs=140.5
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+.. +....++.++
T Consensus 37 ~~IL~nVSfsI~~G-EivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~~------i~~~~~l~~~---------- 99 (549)
T PRK13545 37 HYALNNISFEVPEG-EIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAAL------IAISSGLNGQ---------- 99 (549)
T ss_pred ceEEeeeEEEEeCC-CEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEeee------EEeccccCCC----------
Confidence 35799999999998 999999999999999999999999999999999996520 0000000000
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-c--cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ++.+++... . ......... +..+.++.++..+........+| |||
T Consensus 100 --------------------l------TV~EnL~l~~~~~~~~~~e~~e---~i~elLe~lgL~~~ld~~~~~LS--GGQ 148 (549)
T PRK13545 100 --------------------L------TGIENIELKGLMMGLTKEKIKE---IIPEIIEFADIGKFIYQPVKTYS--SGM 148 (549)
T ss_pred --------------------C------cHHHHHHhhhhhcCCCHHHHHH---HHHHHHHHcCChhHhhCCcccCC--HHH
Confidence 0 011100000 0 000001111 11122223333333445556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 149 rQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~ 228 (549)
T PRK13545 149 KSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIK 228 (549)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998864 47899999999999987 9999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 229 el~~~ 233 (549)
T PRK13545 229 EVVDH 233 (549)
T ss_pred HHHhh
Confidence 87654
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=252.95 Aligned_cols=184 Identities=26% Similarity=0.272 Sum_probs=134.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.. .. +++.+++++|.+.
T Consensus 15 ~~~l~~is~~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~~~~~~------- 83 (207)
T PRK13539 15 RVLFSGLSFTLAAG-EALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYLGHRNA------- 83 (207)
T ss_pred eEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEecCCCc-------
Confidence 34799999999998 9999999999999999999999999999999999988642 22 7788999997521
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ..+..+.++.++...........+| +||||
T Consensus 84 ----~~~------------~~------tv~~~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 134 (207)
T PRK13539 84 ----MKP------------AL------TVAENLEFWAAFLGGE-----ELDIAAALEAVGLAPLAHLPFGYLS--AGQKR 134 (207)
T ss_pred ----CCC------------CC------cHHHHHHHHHHhcCCc-----HHHHHHHHHHcCCHHHHcCChhhcC--HHHHH
Confidence 110 00 111110000 000000 0111222223333333333445667 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeEEEEeC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
|++||||++++|++|||||||++||+.+...+.+.|++. .+++|+|++||+++.+.. |+++.++.
T Consensus 135 rl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 135 RVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 999999999999999999999999999999999999875 357999999999999988 98887743
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=250.45 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=131.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|++|++.
T Consensus 13 ~~~l~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~~q~~~------- 83 (198)
T TIGR01189 13 RMLFEGLSFTLNAG-EALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYLGHLPG------- 83 (198)
T ss_pred EEEEeeeeEEEcCC-cEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEeccCcc-------
Confidence 45799999999998 999999999999999999999999999999999999887654 356778999998632
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccc-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
++. .. ++.+++... ...... ..+..+.++.++..+........+| +||||
T Consensus 84 ----~~~------------~~------tv~~~l~~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~q 134 (198)
T TIGR01189 84 ----LKP------------EL------SALENLHFWAAIHGGA-----QRTIEDALAAVGLTGFEDLPAAQLS--AGQQR 134 (198)
T ss_pred ----ccc------------CC------cHHHHHHHHHHHcCCc-----HHHHHHHHHHcCCHHHhcCChhhcC--HHHHH
Confidence 110 00 111110000 000000 0011122223333333344455677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeEE
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i~ 418 (602)
|++||||++.+|++++|||||++||+.+...+.+.++++ .++.|+|++||+...+. |++++
T Consensus 135 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~ 196 (198)
T TIGR01189 135 RLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EAREL 196 (198)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEe
Confidence 999999999999999999999999999999999999886 35789999999985543 35443
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.6e-31 Score=258.83 Aligned_cols=178 Identities=22% Similarity=0.360 Sum_probs=128.3
Q ss_pred EEeeeEEEEe-----cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 200 EFKDYKVRYR-----EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 200 ~~~~vs~~~~-----~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
.++++++... +| ++++|+|+||||||||+++|+|+++|++|+|.++|. .+++++|++...+
T Consensus 9 ~~~~~~l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q~~~~~~- 74 (246)
T cd03237 9 TLGEFTLEVEGGSISES-EVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQYIKADY- 74 (246)
T ss_pred ccCcEEEEEecCCcCCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecccccCCC-
Confidence 5566666665 45 999999999999999999999999999999999984 5889998632110
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. .++.+++..... . .........+.++.++...........+| |||
T Consensus 75 ----------------------~------~tv~e~l~~~~~-~---~~~~~~~~~~~l~~l~l~~~~~~~~~~LS--gGe 120 (246)
T cd03237 75 ----------------------E------GTVRDLLSSITK-D---FYTHPYFKTEIAKPLQIEQILDREVPELS--GGE 120 (246)
T ss_pred ----------------------C------CCHHHHHHHHhh-h---ccccHHHHHHHHHHcCCHHHhhCChhhCC--HHH
Confidence 0 011111000000 0 00000001122223333333444556677 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|||++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||++++|+++..
T Consensus 121 ~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~ 194 (246)
T cd03237 121 LQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPS 194 (246)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCe
Confidence 9999999999999999999999999999999999999988743 7899999999999987 999999976543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-31 Score=285.44 Aligned_cols=207 Identities=22% Similarity=0.319 Sum_probs=149.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
..++|+||++++| ++++|+|+||||||||+++|+|+.+|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 262 ~~l~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~---- 336 (491)
T PRK10982 262 PSIRDVSFDLHKG-EILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEERRSTG---- 336 (491)
T ss_pred cccceeeEEEeCC-cEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCchhhCC----
Confidence 3689999999998 99999999999999999999999999999999999999876654 35677999999743110
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccc--ccccc--hhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCS--NLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~ 352 (602)
++. ..+...+ .+.+.+. ..... ....... +..+.++.++.. .........+| |
T Consensus 337 ----~~~------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS--g 394 (491)
T PRK10982 337 ----IYA------------YLDIGFN-SLISNIRNYKNKVGLLDNSRMKS---DTQWVIDSMRVKTPGHRTQIGSLS--G 394 (491)
T ss_pred ----ccc------------CCcHHHh-eehhhhhhhcccccccCcHHHHH---HHHHHHHhcCccCCCcccccccCC--c
Confidence 000 0000000 0000000 00000 0001111 112222233332 23455556777 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||++||||++.+|++|||||||++||+.+...+.+.++.+. ++.|||++||+++++.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998764 47999999999999987 99999999999997665
Q ss_pred hh
Q psy3001 431 PS 432 (602)
Q Consensus 431 ~~ 432 (602)
.+
T Consensus 475 ~~ 476 (491)
T PRK10982 475 TK 476 (491)
T ss_pred cc
Confidence 53
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-30 Score=236.03 Aligned_cols=130 Identities=27% Similarity=0.501 Sum_probs=117.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..+++++|...+| ++++|+|+||||||||+++|+|+++|++|+|.++|. ..++|++|
T Consensus 14 ~~l~~~~~~~~~G-e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~~~----------- 70 (144)
T cd03221 14 LLLKDISLTINPG-DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYFEQ----------- 70 (144)
T ss_pred eEEEeeEEEECCC-CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEEcc-----------
Confidence 4799999999998 999999999999999999999999999999999983 23333331
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| +||+||+
T Consensus 71 ---------------------------------------------------------------------lS--~G~~~rv 79 (144)
T cd03221 71 ---------------------------------------------------------------------LS--GGEKMRL 79 (144)
T ss_pred ---------------------------------------------------------------------CC--HHHHHHH
Confidence 44 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+|||||+++|++++|||||++||+.+...+.+.++++ ++|++++||+++.+.. ||++++|++|+
T Consensus 80 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 80 ALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred HHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999999999876 4799999999999987 99999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.3e-30 Score=242.56 Aligned_cols=199 Identities=24% Similarity=0.335 Sum_probs=145.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+..++|+|+++++| |..+|+|+||||||||+++++|.++|++|.+.+-|+....-+. .++|++||+|.-.....|..
T Consensus 44 k~iL~~isW~V~~g-e~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~- 121 (257)
T COG1119 44 KKILGDLSWQVNPG-EHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV- 121 (257)
T ss_pred EeeccccceeecCC-CcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc-
Confidence 33444444444455 8899999999999999999999999999999999999888777 89999999998643322210
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccc-------hh-HHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-------NL-QRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
++.+.+.+...... .. .....+. ...++.++...+.+..-.++
T Consensus 122 --------------------------~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a---~~lle~~g~~~la~r~~~~L 172 (257)
T COG1119 122 --------------------------RETVRDVVLSGFFASIGIYQEDLTAEDLAAA---QWLLELLGAKHLADRPFGSL 172 (257)
T ss_pred --------------------------ccccceeeeecccccccccccCCCHHHHHHH---HHHHHHcchhhhccCchhhc
Confidence 11111111100000 00 1111222 22233444444455555566
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc---ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA---HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~---~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
| -|||||+.|||||+++|++||||||+++||...++.+.+.+.++.. +.++|+|||..+++.. .++++.+++|+
T Consensus 173 S--~Ge~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~ 250 (257)
T COG1119 173 S--QGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGE 250 (257)
T ss_pred C--HhHHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCc
Confidence 7 6999999999999999999999999999999999999999888643 4799999999999988 79999999999
Q ss_pred EEeec
Q psy3001 425 VVEFD 429 (602)
Q Consensus 425 i~~~g 429 (602)
++..|
T Consensus 251 v~~~g 255 (257)
T COG1119 251 VVAQG 255 (257)
T ss_pred eeecc
Confidence 98765
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.6e-30 Score=310.81 Aligned_cols=206 Identities=19% Similarity=0.188 Sum_probs=155.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||.+.+| |++||+|+||||||||+|+|+|+++|++|+|.++|.++.. .....++.|||+||++..
T Consensus 1952 ~~aL~~ISf~I~~G-Ei~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~IGy~pQ~~~L------ 2023 (2272)
T TIGR01257 1952 SPAVDRLCVGVRPG-ECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI------ 2023 (2272)
T ss_pred ceEEEeeEEEEcCC-cEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhEEEEeccccC------
Confidence 45788888888887 9999999999999999999999999999999999999865 455678899999997321
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+ ..-++++.+.. ......... ....+..+.++.+++..........+| |||||
T Consensus 2024 -----~------------------~~LTv~E~L~l~a~l~g~~~~-~~~~~v~~lLe~lgL~~~~dk~~~~LS--GGqKq 2077 (2272)
T TIGR01257 2024 -----D------------------DLLTGREHLYLYARLRGVPAE-EIEKVANWSIQSLGLSLYADRLAGTYS--GGNKR 2077 (2272)
T ss_pred -----C------------------CCCCHHHHHHHHHHhcCCCHH-HHHHHHHHHHHHcCCHHHhcCChhhCC--HHHHH
Confidence 1 00011111000 000000000 001111122334444444455556777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+++||||+.+|++|+|||||++||+.+++.+++.|++. .+|+|||++||+++++.. |||+++|++|+++..|+++++
T Consensus 2078 RLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2078 KLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999886 457999999999999988 999999999999999999987
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
...
T Consensus 2158 k~~ 2160 (2272)
T TIGR01257 2158 KSK 2160 (2272)
T ss_pred HHH
Confidence 543
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=242.65 Aligned_cols=201 Identities=21% Similarity=0.332 Sum_probs=154.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....++|+||..++| ++.|++|+|||||||.+++|.|+++|++|+|.++|.+++. ..+.+|||+|.+....
T Consensus 14 ~k~av~~isf~v~~G-~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGyLPEERGLy---- 84 (300)
T COG4152 14 DKKAVDNISFEVPPG-EIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGYLPEERGLY---- 84 (300)
T ss_pred ceeeecceeeeecCC-eEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhcccChhhhccC----
Confidence 457899999999999 9999999999999999999999999999999999988764 4577899999863211
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccc-cc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII-TP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
....+.+.+. .. ......+.....+..+++++ ........-.+|| -|
T Consensus 85 -------------------------~k~tv~dql~yla~LkGm~~~e~~~~~~~wLer~~---i~~~~~~kIk~LS--KG 134 (300)
T COG4152 85 -------------------------PKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE---IVGKKTKKIKELS--KG 134 (300)
T ss_pred -------------------------ccCcHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcc---ccccccchHHHhh--hh
Confidence 1111111000 00 01111222223333333322 2222233334566 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
.+|+|.+-.+++++|+++|||||+|+|||.+.+.+.+.+.+++ +|.|||+.||+++.+.. ||+++.|++|+.|-+|+.
T Consensus 135 nqQKIQfisaviHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v 214 (300)
T COG4152 135 NQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTV 214 (300)
T ss_pred hhHHHHHHHHHhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccH
Confidence 9999999999999999999999999999999999999998875 58999999999999998 999999999999999998
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
++..+
T Consensus 215 ~~ir~ 219 (300)
T COG4152 215 EDIRR 219 (300)
T ss_pred HHHHH
Confidence 88754
|
|
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=288.47 Aligned_cols=206 Identities=24% Similarity=0.333 Sum_probs=157.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| |+++|+|+||||||||+++|+|+++|++|+|.+||+++...+...+ ++.++|++|++.
T Consensus 21 ~~il~~vs~~i~~G-e~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~--- 96 (648)
T PRK10535 21 VEVLKGISLDIYAG-EMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYH--- 96 (648)
T ss_pred eeeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHHHhccEEEEeCCcc---
Confidence 35799999999998 9999999999999999999999999999999999999998876654 578999999742
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
++. ..+...|-.. .. ....... .....+..+.++.++..+........+| +|
T Consensus 97 --------l~~------------~~tv~enl~~-~~----~~~~~~~-~~~~~~~~~~l~~lgl~~~~~~~~~~LS--~G 148 (648)
T PRK10535 97 --------LLS------------HLTAAQNVEV-PA----VYAGLER-KQRLLRAQELLQRLGLEDRVEYQPSQLS--GG 148 (648)
T ss_pred --------cCC------------CCCHHHHHHH-HH----HHcCCCH-HHHHHHHHHHHHHCCChhhhcCCcccCC--HH
Confidence 110 0010000000 00 0000000 0111122333334444444555666777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|+||++|||||+++|++|+|||||++||+.+.+.+.+.++++. +++|+|++||+++.+..||++++|++|++++.|+.+
T Consensus 149 q~qrv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~ 228 (648)
T PRK10535 149 QQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQ 228 (648)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCcc
Confidence 9999999999999999999999999999999999999998875 479999999999988779999999999999999888
Q ss_pred HHh
Q psy3001 433 VLM 435 (602)
Q Consensus 433 ~l~ 435 (602)
+..
T Consensus 229 ~~~ 231 (648)
T PRK10535 229 EKV 231 (648)
T ss_pred ccc
Confidence 765
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-30 Score=287.04 Aligned_cols=207 Identities=22% Similarity=0.239 Sum_probs=149.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC--CceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA--DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~--~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
++..++|+|+++.+| |++||+||||||||||+++|+|..+|+ +|+|.+||.++.. ..++.++||+|++.
T Consensus 80 ~~~iL~~vs~~i~~G-e~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~----~~~~~i~yv~Q~~~---- 150 (659)
T PLN03211 80 ERTILNGVTGMASPG-EILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK----QILKRTGFVTQDDI---- 150 (659)
T ss_pred CCeeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch----hhccceEEECcccc----
Confidence 356899999999998 999999999999999999999999985 8999999998742 34567999999732
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcc-----cccCCcCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIY-----SHFGETVT 349 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~ls 349 (602)
++. ..+...+-........+.....++.. .+..+.++.+++.... +.....+|
T Consensus 151 -------l~~------------~lTV~E~l~~~a~~~~~~~~~~~~~~---~~v~~~l~~lgL~~~~~t~vg~~~~~~LS 208 (659)
T PLN03211 151 -------LYP------------HLTVRETLVFCSLLRLPKSLTKQEKI---LVAESVISELGLTKCENTIIGNSFIRGIS 208 (659)
T ss_pred -------cCC------------cCCHHHHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHcCChhhcCceeCCCCCCCcC
Confidence 110 00111000000000000000001111 1122223333332211 22344566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeCceEE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDKGLVV 426 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~G~i~ 426 (602)
||||||++|||||+.+|++|+|||||++||+.++..+.+.|+++. +++|||+++|+++. +.. +|++++|++|+++
T Consensus 209 --gGerqRv~ia~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv 286 (659)
T PLN03211 209 --GGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCL 286 (659)
T ss_pred --hhhhhHHHHHHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEE
Confidence 699999999999999999999999999999999999999999875 57999999999984 656 9999999999999
Q ss_pred eecChhHHhh
Q psy3001 427 EFDSPSVLMK 436 (602)
Q Consensus 427 ~~g~~~~l~~ 436 (602)
..|+++++..
T Consensus 287 ~~G~~~~~~~ 296 (659)
T PLN03211 287 FFGKGSDAMA 296 (659)
T ss_pred EECCHHHHHH
Confidence 9999888753
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-30 Score=249.34 Aligned_cols=185 Identities=16% Similarity=0.179 Sum_probs=130.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-ECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|. ++|..+. ++ +.
T Consensus 2 vl~~vs~~i~~G-e~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~~----------~~---~~---------- 57 (213)
T PRK15177 2 VLDKTDFVMGYH-EHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDALP----------LG---AN---------- 57 (213)
T ss_pred eeeeeeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCceec----------cc---cc----------
Confidence 589999999998 99999999999999999999999999999997 7764321 11 11
Q ss_pred CceeEeeecccceeeeccccceeecccccccccc--c-ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT--P-FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+.++. .. ++.+++.. . ......+... ...+ ..............+| +|||
T Consensus 58 -~~l~~------------~l------tv~enl~~~~~~~~~~~~~~~~---~~~~---~~~l~~~~~~~~~~lS--~G~~ 110 (213)
T PRK15177 58 -SFILP------------GL------TGEENARMMASLYGLDGDEFSH---FCYQ---LTQLEQCYTDRVSEYS--VTMK 110 (213)
T ss_pred -cccCC------------cC------cHHHHHHHHHHHcCCCHHHHHH---HHHH---HhChhHHhhchHhhcC--HHHH
Confidence 00000 00 00000000 0 0000000000 0001 1111111233334566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
||++||||++.+|++++|||||+++|+.+...+.+.+.+..+++|+|++||+++.+.. ||++++|++|+++..++.++.
T Consensus 111 qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 190 (213)
T PRK15177 111 THLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQA 190 (213)
T ss_pred HHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999887654456789999999999987 999999999999998887766
Q ss_pred h
Q psy3001 435 M 435 (602)
Q Consensus 435 ~ 435 (602)
.
T Consensus 191 ~ 191 (213)
T PRK15177 191 T 191 (213)
T ss_pred H
Confidence 3
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.97 E-value=5.5e-30 Score=238.28 Aligned_cols=136 Identities=29% Similarity=0.362 Sum_probs=118.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++++ +++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.+ +++++|++
T Consensus 13 ~~~l~~~-~~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~~-------- 70 (177)
T cd03222 13 FFLLVEL-GVVKEG-EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQYI-------- 70 (177)
T ss_pred EEEEccC-cEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEcccC--------
Confidence 3456664 788888 9999999999999999999999999999999999853 56666530
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
. +| +|||||
T Consensus 71 ------------------------------------~---------------------------------LS--gGq~qr 79 (177)
T cd03222 71 ------------------------------------D---------------------------------LS--GGELQR 79 (177)
T ss_pred ------------------------------------C---------------------------------CC--HHHHHH
Confidence 0 44 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cc-cEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AH-CTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
++|||||+.+|++++|||||++||+.+.+.+.+.+++.. ++ .|+|++||+++.+.. ||++++|+++-.+
T Consensus 80 v~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 80 VAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred HHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999999999999999998864 33 899999999999987 9999999987554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.3e-30 Score=244.43 Aligned_cols=177 Identities=19% Similarity=0.266 Sum_probs=128.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++ +||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.... ++.++|++|++...
T Consensus 15 ~l~~-vs~~i~~G-e~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~~~~~~~~------ 82 (195)
T PRK13541 15 NLFD-LSITFLPS-AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYIGHNLGLK------ 82 (195)
T ss_pred EEEE-EEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEeccCCcCCC------
Confidence 4555 99999998 999999999999999999999999999999999999876532 34588888863110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ ..++.+++.... .......+....++..+..+........+| +|||||+
T Consensus 83 ----~-------------------~~tv~~~l~~~~-----~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--~G~~~rl 132 (195)
T PRK13541 83 ----L-------------------EMTVFENLKFWS-----EIYNSAETLYAAIHYFKLHDLLDEKCYSLS--SGMQKIV 132 (195)
T ss_pred ----c-------------------cCCHHHHHHHHH-----HhcccHHHHHHHHHHcCCHhhhccChhhCC--HHHHHHH
Confidence 1 011111100000 000000111122223333333444556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeecccccccCCeE
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~~d~i 417 (602)
+||||++++|++++|||||++||+.+.+.+.+.++.. ..++|+|++||+++.+..+|.+
T Consensus 133 ~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 133 AIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 9999999999999999999999999999999999754 3579999999999999988865
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.5e-29 Score=235.13 Aligned_cols=155 Identities=23% Similarity=0.278 Sum_probs=119.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+|+||++.+| ++++|+||||||||||++++. +++|++.+++... .. .++.+++++|
T Consensus 8 ~~~l~~isl~i~~G-~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~~----~~~~~~~~~q---------- 67 (176)
T cd03238 8 VHNLQNLDVSIPLN-VLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-KF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeecceEEEEcCC-CEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-cc----ccccEEEEhH----------
Confidence 34799999999998 999999999999999999985 3799999876421 11 1122333322
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
.+.++.++... ........+| +||||
T Consensus 68 ---------------------------------------------------~~~l~~~~L~~~~~~~~~~~LS--gGq~q 94 (176)
T cd03238 68 ---------------------------------------------------LQFLIDVGLGYLTLGQKLSTLS--GGELQ 94 (176)
T ss_pred ---------------------------------------------------HHHHHHcCCCccccCCCcCcCC--HHHHH
Confidence 01112222222 1334455677 69999
Q ss_pred HHHHHHHHhhC--CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceE
Q psy3001 357 LICLARALLRK--TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLV 425 (602)
Q Consensus 357 rl~lAral~~~--p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i 425 (602)
|++||||++.+ |++++|||||++||+.+.+.+.+.+++.. .++|||++||+++.+..||++++|++|+.
T Consensus 95 rl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~~ 166 (176)
T cd03238 95 RVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGSG 166 (176)
T ss_pred HHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCCC
Confidence 99999999999 99999999999999999999999998865 47999999999998866999999976543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-30 Score=255.83 Aligned_cols=191 Identities=22% Similarity=0.310 Sum_probs=136.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEE-----------ECCeecCCCChHHHhh--cccee
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII-----------IDGVDIRTLGLHTLRS--RLTII 265 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~-----------i~g~~~~~~~~~~~~~--~i~~v 265 (602)
..++|+++ ..+| ++++|+|+||||||||+++|+|+++|++|+|. ++|.++........+. .++++
T Consensus 15 ~~l~~i~~-i~~G-e~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 92 (255)
T cd03236 15 FKLHRLPV-PREG-QVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVK 92 (255)
T ss_pred hhhhcCCC-CCCC-CEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHhhhcccceeee
Confidence 46889984 6777 99999999999999999999999999999996 7788776543322222 35777
Q ss_pred cccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 266 PQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 266 ~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
+|.+... +. .+.+++... +... ....+..+.++.++.........
T Consensus 93 ~~~~~~~-------~~-------------------~~~~~i~~~--------l~~~-~~~~~~~~~l~~~gl~~~~~~~~ 137 (255)
T cd03236 93 PQYVDLI-------PK-------------------AVKGKVGEL--------LKKK-DERGKLDELVDQLELRHVLDRNI 137 (255)
T ss_pred cchhccC-------ch-------------------HHHHHHHHH--------hchh-HHHHHHHHHHHHcCCchhhcCCh
Confidence 7752210 00 011111110 0000 01112223333444444445555
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
..+| +|||||++||||++.+|++++|||||++||+.+...+.+.+++..+ ++|+|++||+++.+.. ||+|++|+ |
T Consensus 138 ~~LS--~G~~qrv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~ 214 (255)
T cd03236 138 DQLS--GGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-G 214 (255)
T ss_pred hhCC--HHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-C
Confidence 6677 6999999999999999999999999999999999999999988753 6999999999999987 99999995 5
Q ss_pred eEEeec
Q psy3001 424 LVVEFD 429 (602)
Q Consensus 424 ~i~~~g 429 (602)
++.+.|
T Consensus 215 ~~~~~~ 220 (255)
T cd03236 215 EPGAYG 220 (255)
T ss_pred CCCcce
Confidence 565433
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-29 Score=232.34 Aligned_cols=143 Identities=36% Similarity=0.592 Sum_probs=126.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..+++++|.+.+| ++++|+|+||||||||+++|+|+++|++|+|.++|.++.......+++.+++++|
T Consensus 13 ~~l~~~~~~i~~g-~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q----------- 80 (157)
T cd00267 13 TALDNVSLTLKAG-EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ----------- 80 (157)
T ss_pred eeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee-----------
Confidence 4799999999998 9999999999999999999999999999999999988766544455555554441
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| +||+||+
T Consensus 81 ---------------------------------------------------------------------lS--~G~~~r~ 89 (157)
T cd00267 81 ---------------------------------------------------------------------LS--GGQRQRV 89 (157)
T ss_pred ---------------------------------------------------------------------CC--HHHHHHH
Confidence 44 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
+||||++.+|++++|||||++||+.+...+.+.+++..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 90 ~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 90 ALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred HHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 999999999999999999999999999999999988644 5899999999999998 79999999874
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-29 Score=276.26 Aligned_cols=206 Identities=16% Similarity=0.197 Sum_probs=142.6
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCC-CChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+||.+.+| ++++|+|+||||||||+++|+|+.+| ++|+|.++|.++.. ......++.++|++|++...+...
T Consensus 274 ~il~~vsl~i~~G-e~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 352 (490)
T PRK10938 274 PILHNLSWQVNPG-EHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVS 352 (490)
T ss_pred eEEeeceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceEECHHHHhhcccC
Confidence 4677777777777 99999999999999999999998876 79999999987632 233456788999999743111000
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~ 355 (602)
. . . ...... ..... ......... ....+..+.++.++... ........+| ||||
T Consensus 353 ~--~--------~-------~~~~~~--~~~~~--~~~~~~~~~--~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGq~ 407 (490)
T PRK10938 353 T--S--------V-------RNVILS--GFFDS--IGIYQAVSD--RQQKLAQQWLDILGIDKRTADAPFHSLS--WGQQ 407 (490)
T ss_pred C--c--------H-------HHHHHh--ccccc--cccccCCCH--HHHHHHHHHHHHcCCchhhccCchhhCC--HHHH
Confidence 0 0 0 000000 00000 000000000 00111223333444443 4455556777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-c-cEEEEeeeccccccc--CCeEEEEeCceEEeecC
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-H-CTVLTIAHRLNTIID--SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~-~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g~ 430 (602)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ + .|||+|||+++.+.. ||++++|++|++++...
T Consensus 408 qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 408 RLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 999999999999999999999999999999999999988743 4 579999999999974 79999999999987543
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=276.70 Aligned_cols=189 Identities=17% Similarity=0.228 Sum_probs=137.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.++|. +.++|++|++...+
T Consensus 334 ~l~~is~~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~~~~q~~~~~~------ 395 (530)
T PRK15064 334 LFKNLNLLLEAG-ERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIGYYAQDHAYDF------ 395 (530)
T ss_pred eecCcEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEEEEcccccccC------
Confidence 455666666666 999999999999999999999999999999999872 47999999742111
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ . . .++.+.+....... ....+..+.++.++.. .........+| ||||||+
T Consensus 396 ---~-~-----------~------~t~~~~~~~~~~~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LS--gGq~qrv 447 (530)
T PRK15064 396 ---E-N-----------D------LTLFDWMSQWRQEG-----DDEQAVRGTLGRLLFSQDDIKKSVKVLS--GGEKGRM 447 (530)
T ss_pred ---C-C-----------C------CcHHHHHHHhccCC-----ccHHHHHHHHHHcCCChhHhcCcccccC--HHHHHHH
Confidence 0 0 0 00000000000000 0001112223333332 23445566777 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHHhh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVLMK 436 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l~~ 436 (602)
+|||||+.+|++|||||||++||+.+...+.+.+++. +.|||+|||+++++.. ||++++|++|+++ ..|++.+++.
T Consensus 448 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~ 525 (530)
T PRK15064 448 LFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLR 525 (530)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHH
Confidence 9999999999999999999999999999999999876 3599999999999988 9999999999998 6677776654
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-30 Score=286.09 Aligned_cols=121 Identities=39% Similarity=0.649 Sum_probs=116.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++|++|++||+|||||+||||||||+|+|+|+|+|++|+|.+||.|++.++++.+|++|||||||+++|+|||+|||.
T Consensus 489 L~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~ 568 (709)
T COG2274 489 LEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIA 568 (709)
T ss_pred hhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... .++|++++|++.+++++|+.++|.||+|+|||+|+||
T Consensus 569 l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~L 610 (709)
T COG2274 569 LGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANL 610 (709)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCC
Confidence 6654 5789999999999999999999999999999999997
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.4e-29 Score=225.83 Aligned_cols=217 Identities=20% Similarity=0.269 Sum_probs=163.8
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC-eecCCCChHHH-hhccceecccchhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG-VDIRTLGLHTL-RSRLTIIPQVLATIF 273 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g-~~~~~~~~~~~-~~~i~~v~Q~~~~~~ 273 (602)
.+-..++|+||++.+| |.-+|+|||||||||++-+|+|-.+|+.|+++++| .++..++...+ |..||-=+|-|.
T Consensus 16 ~GF~Aln~ls~~v~~G-elr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~Pt--- 91 (249)
T COG4674 16 GGFKALNDLSFSVDPG-ELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPT--- 91 (249)
T ss_pred cceeeeeeeEEEecCC-eEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCe---
Confidence 3567899999999999 99999999999999999999999999999999999 89999987766 456888888632
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.|- +-+...|-++..+.--.....+... .....+..+.+...++.+........||
T Consensus 92 --------Vfe------------~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LS-- 149 (249)
T COG4674 92 --------VFE------------NLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLS-- 149 (249)
T ss_pred --------ehh------------hccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhc--
Confidence 221 2222222221100000000011000 1122234444445555555555555677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
-||||++.|+..+.++|++|+||||++++..+......+.++.+...++|++|.||+.+++. |++|.||+.|.+...|+
T Consensus 150 HGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGs 229 (249)
T COG4674 150 HGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS 229 (249)
T ss_pred cchhhhhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeeccc
Confidence 59999999999999999999999999999777777788888888888999999999999998 99999999999999999
Q ss_pred hhHHhhcc
Q psy3001 431 PSVLMKNK 438 (602)
Q Consensus 431 ~~~l~~~~ 438 (602)
.+++-.++
T Consensus 230 ld~v~~dp 237 (249)
T COG4674 230 LDEVQNDP 237 (249)
T ss_pred HHHhhcCc
Confidence 99886553
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.5e-29 Score=237.32 Aligned_cols=205 Identities=24% Similarity=0.281 Sum_probs=149.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||.+++| ++++++|+|||||||++|+|+|++.|++|.|.++|.+... +..++-+++++|.-. ...
T Consensus 39 AVqdisf~IP~G-~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gq--------k~q 108 (325)
T COG4586 39 AVQDISFEIPKG-EIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQ--------KLQ 108 (325)
T ss_pred hhheeeeecCCC-cEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhh--------hhe
Confidence 789999999999 9999999999999999999999999999999999986654 233344455554421 000
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
.++.. + ...++..+..+.+ .....|........+ .+...+.+...-..+|. |||.|+.
T Consensus 109 l~Wdl---p-------~~ds~~v~~~Iy~-------Ipd~~F~~r~~~l~e---iLdl~~~lk~~vr~LSl--GqRmrae 166 (325)
T COG4586 109 LWWDL---P-------ALDSLEVLKLIYE-------IPDDEFAERLDFLTE---ILDLEGFLKWPVRKLSL--GQRMRAE 166 (325)
T ss_pred eeeec---h-------hhhhHHHHHHHHh-------CCHHHHHHHHHHHHH---Hhcchhhhhhhhhhccc--hHHHHHH
Confidence 11100 0 0111111111111 111222222222222 23334444555567775 9999999
Q ss_pred HHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHhh
Q psy3001 360 LARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 360 lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
||.||+++|+||+|||||-+||..++..+.+.+++.. .++||++.||.++-+.. ||||+.++.|+++..|+.+++.+
T Consensus 167 LaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~ 246 (325)
T COG4586 167 LAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQE 246 (325)
T ss_pred HHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHH
Confidence 9999999999999999999999999999999998875 36999999999999998 99999999999999999888754
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-29 Score=276.59 Aligned_cols=207 Identities=19% Similarity=0.263 Sum_probs=150.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+..++|+|+.+.+| |+++|+|+||||||||+++|+|..+|. +|+|.+||.++. ...+++.++|++|++
T Consensus 37 ~~~iL~~vs~~i~~G-e~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~---- 108 (617)
T TIGR00955 37 RKHLLKNVSGVAKPG-ELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDD---- 108 (617)
T ss_pred ccccccCCEEEEeCC-eEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeecccc----
Confidence 355899999999999 999999999999999999999999885 799999999875 356788999999973
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccc--cCCc
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSH--FGET 347 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~--~~~~ 347 (602)
.++. ..+...+-........+...... ....+..+.++.+++.+ .++. ....
T Consensus 109 -------~~~~------------~lTV~e~l~f~~~~~~~~~~~~~---~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~ 166 (617)
T TIGR00955 109 -------LFIP------------TLTVREHLMFQAHLRMPRRVTKK---EKRERVDEVLQALGLRKCANTRIGVPGRVKG 166 (617)
T ss_pred -------ccCc------------cCcHHHHHHHHHhcCCCCCCCHH---HHHHHHHHHHHHcCchhcCcCccCCCCCCCC
Confidence 2220 01111110000000000000001 11112223333333322 2222 1234
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccc-cccc-CCeEEEEeCce
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLN-TIID-SDRVLVLDKGL 424 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~-~i~~-~d~i~~l~~G~ 424 (602)
+| ||||||++|||||+.+|++++|||||++||+.+...+.+.+++..+ ++|+|+++|+++ .+.+ +|++++|++|+
T Consensus 167 LS--gGqrkRvsia~aL~~~p~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~ 244 (617)
T TIGR00955 167 LS--GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGR 244 (617)
T ss_pred cC--cchhhHHHHHHHHHcCCCEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCe
Confidence 66 6999999999999999999999999999999999999999998754 799999999996 5655 99999999999
Q ss_pred EEeecChhHHh
Q psy3001 425 VVEFDSPSVLM 435 (602)
Q Consensus 425 i~~~g~~~~l~ 435 (602)
++..|+++++.
T Consensus 245 ~v~~G~~~~~~ 255 (617)
T TIGR00955 245 VAYLGSPDQAV 255 (617)
T ss_pred EEEECCHHHHH
Confidence 99999988874
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-29 Score=258.53 Aligned_cols=228 Identities=22% Similarity=0.252 Sum_probs=151.5
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCce
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGL 424 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~ 424 (602)
.++| ||.|-|++||||+..+||+|+|||||++||..+..|+...|..+. .|+|+||||..++.. |.-|+.+++-+
T Consensus 197 ~slS--GGWrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~k 272 (582)
T KOG0062|consen 197 KSLS--GGWRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLK 272 (582)
T ss_pred cccC--cchhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhh
Confidence 3455 699999999999999999999999999999999999999998764 799999999999998 99999999887
Q ss_pred EEee-cChhHHhhcchhHHHHHHHhh-------------hhhH--HHHHHHhhhhhHH------------------HHHH
Q psy3001 425 VVEF-DSPSVLMKNKASIFYSMAKDA-------------GLAW--LAVRLETVGNLIT------------------FSAA 470 (602)
Q Consensus 425 i~~~-g~~~~l~~~~~~~~~~~~~~~-------------~~~~--~~~~~~~~~~~~~------------------~~~~ 470 (602)
+-.+ |+.+++.+...+......+.. ..++ .+.+.......+. +..+
T Consensus 273 L~~YkGN~~~Fvk~k~E~~~n~qrefe~q~~~R~h~q~fid~FrYna~ra~svqSRIk~L~kl~~lk~~~~~~~~~~~fP 352 (582)
T KOG0062|consen 273 LDYYKGNYSQFVKTKPEAKKNQQREFEVQMKYRAHLQVFIDKFRYNAARASSVQSRIKMLGKLPALKSTLIEVLIGFLFP 352 (582)
T ss_pred hhhhcCcHHHHHHhhHHhhhhhhhhcchHHHHHHHHHHHHHHhccCcccchhHHHHHHHhccCCCCCccceecccceecC
Confidence 7543 666666544222111110000 0000 0000000000000 0000
Q ss_pred H-HHHHhcccccccceeeEEecc---------------eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC
Q psy3001 471 L-LAVLSKETLNAGLVGLSVSYA---------------MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 534 (602)
Q Consensus 471 ~-~~~~~~~~~~~~~~~l~i~~G---------------e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~ 534 (602)
. ..+.+...+.+.+++|.-.++ +++++||+||+||||++|++.|-+.|.+|.+-+.+
T Consensus 353 ~~~e~~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~------- 425 (582)
T KOG0062|consen 353 TEGEVLSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP------- 425 (582)
T ss_pred CCCCcCCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-------
Confidence 0 001112222233344443333 46899999999999999999999999999998877
Q ss_pred hhhhhccceEecCCcccc-ccchh--ccc-CCCCCCcHHHHHHHHHHcCCCccccccc
Q psy3001 535 LHTLRSRLTIIPQDPVLF-SGTLR--LNL-DPVGESSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 535 ~~~lr~~i~~V~Qdp~lf-~~Tv~--~nl-~~~~~~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
|.+|+|-.|-..-| +-.|. +-+ .-.+..+++++++.|..+||..-+..++
T Consensus 426 ----r~ri~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~s 479 (582)
T KOG0062|consen 426 ----RLRIKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQS 479 (582)
T ss_pred ----cceecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhcc
Confidence 77999999977432 22221 101 1223348999999999999987655444
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.1e-28 Score=275.38 Aligned_cols=187 Identities=18% Similarity=0.249 Sum_probs=133.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||.+.+| +++||+||||||||||+++|+|+++|++|+|.+++. ..++|++|++...
T Consensus 326 ~il~~isl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy~~Q~~~~~------ 387 (638)
T PRK10636 326 IILDSIKLNLVPG-SRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGYFAQHQLEF------ 387 (638)
T ss_pred eeeccceEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEEecCcchhh------
Confidence 3455555555556 999999999999999999999999999999999741 2689999963100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qr 357 (602)
+. ....+...+.. ... . ....+....+..++..+ ........|| ||||||
T Consensus 388 ---l~------------------~~~~~~~~~~~-~~~--~---~~~~~~~~~L~~~~l~~~~~~~~~~~LS--gGekqR 438 (638)
T PRK10636 388 ---LR------------------ADESPLQHLAR-LAP--Q---ELEQKLRDYLGGFGFQGDKVTEETRRFS--GGEKAR 438 (638)
T ss_pred ---CC------------------ccchHHHHHHH-hCc--h---hhHHHHHHHHHHcCCChhHhcCchhhCC--HHHHHH
Confidence 00 00000000000 000 0 00111122233333321 2334455677 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l 434 (602)
|+|||||+.+|++|||||||++||+.+...+.+.|+.+ . .|||+|||+++++.. ||+|++|++|+++ ..|+++++
T Consensus 439 l~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~ 515 (638)
T PRK10636 439 LVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDY 515 (638)
T ss_pred HHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHH
Confidence 99999999999999999999999999999999999887 3 499999999999988 9999999999997 56776665
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.2e-28 Score=272.41 Aligned_cols=186 Identities=19% Similarity=0.262 Sum_probs=132.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ +..++|++|++...+
T Consensus 524 il~~vsl~i~~G-e~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~igyv~Q~~~~~l------ 585 (718)
T PLN03073 524 LFKNLNFGIDLD-SRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMAVFSQHHVDGL------ 585 (718)
T ss_pred eEeccEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEEEEeccccccC------
Confidence 455555555555 89999999999999999999999999999999875 246899999731100
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl 358 (602)
+...+.... . ........ ..+....+..++..+ ........|| ||||||+
T Consensus 586 -------------------~~~~~~~~~-~--~~~~~~~~-----~~~i~~~L~~~gl~~~~~~~~~~~LS--gGqkqRv 636 (718)
T PLN03073 586 -------------------DLSSNPLLY-M--MRCFPGVP-----EQKLRAHLGSFGVTGNLALQPMYTLS--GGQKSRV 636 (718)
T ss_pred -------------------CcchhHHHH-H--HHhcCCCC-----HHHHHHHHHHCCCChHHhcCCccccC--HHHHHHH
Confidence 000000000 0 00000000 011122233333332 2344556677 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhHH
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSVL 434 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~l 434 (602)
+|||||+.+|++|||||||++||+.+...+.+.+... + .|||+|||+++++.. ||++++|++|+++ ..|+++++
T Consensus 637 aLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 637 AFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 9999999999999999999999999999998888765 3 499999999999988 9999999999998 45665543
|
|
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=224.53 Aligned_cols=208 Identities=26% Similarity=0.340 Sum_probs=150.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
.+..++++|+.++++ +++-|+|.||||||||+++|+|-+.|++|+|.+||+|+..++.......++-|+|+|..-.
T Consensus 18 ek~~l~~~sL~I~~g-~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt--- 93 (263)
T COG1101 18 EKRALNGLSLEIAEG-DFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGT--- 93 (263)
T ss_pred HHHHHhcCceeecCC-ceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCC---
Confidence 356799999999998 9999999999999999999999999999999999999999999999999999999964311
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccc--ccccchhH-HHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII--TPFCSNLQ-RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
.| .-++.+|-.+.+.-- ......+. .........+..+ .++..+..+..-.-+| ||
T Consensus 94 --~~----------------~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l-~lgLenrL~~~iglLS--GG 152 (263)
T COG1101 94 --AP----------------ELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARL-GLGLENRLSDRIGLLS--GG 152 (263)
T ss_pred --cc----------------cccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhc-ccchhhhhcChhhhcc--ch
Confidence 01 111111111111000 00000000 0111111111111 2223333344444566 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||-++++.|-++.|+||+|||-|++|||.+...+.+.-.+.- .+.|.++|||.++...+ -+|.++|++|+|+-.-
T Consensus 153 QRQalsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 153 QRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 9999999999999999999999999999999999988766642 35799999999999877 7999999999998653
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.1e-28 Score=213.59 Aligned_cols=221 Identities=19% Similarity=0.282 Sum_probs=158.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC-----eecCCCChHHH----hhccceecc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG-----VDIRTLGLHTL----RSRLTIIPQ 267 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g-----~~~~~~~~~~~----~~~i~~v~Q 267 (602)
+.+-++||||...+| |+.+|||+||||||||+++|++-+.|+.|+|.+.- .++-.++..+. |..-|+|.|
T Consensus 18 ~~~gc~~vsF~l~PG-eVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR~L~RTeWG~VhQ 96 (258)
T COG4107 18 PGKGCRDVSFDLYPG-EVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEWGFVHQ 96 (258)
T ss_pred CCcCccccceeecCC-cEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHHHHhhhccceeec
Confidence 345789999999998 99999999999999999999999999999999854 23334443333 445688999
Q ss_pred cchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCC
Q psy3001 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE 346 (602)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~ 346 (602)
+|..-.- .......++-+-.+.--.-..-...+...+.++ .+... .-....+.
T Consensus 97 nP~DGLR-----------------------m~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~---~VEI~~~RiDD~Pr 150 (258)
T COG4107 97 NPRDGLR-----------------------MQVSAGGNIGERLMAIGARHYGNIRAEAQDWLE---EVEIDLDRIDDLPR 150 (258)
T ss_pred Cccccce-----------------------eeeccCCccchhHHhhhhhhhhhHHHHHHHHHH---hcccCcccccCccc
Confidence 8642110 000011112110000000000011122222222 22221 12455566
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
+.| ||++||+.|||-|...|+++++||||-+||......+.+.++.+.. +.++++|||++..+.- +||..||.+|
T Consensus 151 tFS--GGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g 228 (258)
T COG4107 151 TFS--GGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQG 228 (258)
T ss_pred ccc--hHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCC
Confidence 777 5999999999999999999999999999999999999999998753 6899999999999987 9999999999
Q ss_pred eEEeecChhHHhhcchhHHHHHH
Q psy3001 424 LVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 424 ~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
++++.|-.+.++.++...|..+.
T Consensus 229 ~vve~GLTDrvLDDP~hPYTQLL 251 (258)
T COG4107 229 QVVESGLTDRVLDDPHHPYTQLL 251 (258)
T ss_pred CEeccccccccccCCCCchHHHH
Confidence 99999999999888777777654
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.2e-28 Score=285.59 Aligned_cols=188 Identities=20% Similarity=0.208 Sum_probs=128.4
Q ss_pred HHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHh---hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEe
Q psy3001 330 KRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALL---RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTI 404 (602)
Q Consensus 330 ~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~---~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~i 404 (602)
+.++.++.... ......++| |||+||++|||||+ .+|++|||||||++||+.+.+.+.+.|+++. +|.|||+|
T Consensus 791 ~~L~~vGL~~l~l~q~~~tLS--GGE~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiI 868 (1809)
T PRK00635 791 HALCSLGLDYLPLGRPLSSLS--GGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVII 868 (1809)
T ss_pred HHHHHcCCcchhhcCccccCC--HHHHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 34444555443 455566777 69999999999998 5999999999999999999999999998875 47899999
Q ss_pred eecccccccCCeEEEEe------CceEEeecChhHHhhcch--hHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVLD------KGLVVEFDSPSVLMKNKA--SIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLS 476 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~------~G~i~~~g~~~~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (602)
+|+++.+..||++++|. +|+++..|+++++..... ..+....-.....+... ..+.... +......+..
T Consensus 869 sHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gtpeel~~~~s~t~~~l~~~l~~~~~~~~~-~~~~~~~--l~~~~i~i~~ 945 (1809)
T PRK00635 869 EHNMHVVKVADYVLELGPEGGNLGGYLLASCSPEELIHLHTPTAKALRPYLSSPQELPYL-PDPSPKP--PVPADITIKN 945 (1809)
T ss_pred eCCHHHHHhCCEEEEEccCCCCCCCEEEEeCCHHHHHhccCchHHHHHHHhhcccccccc-ccccccc--cccceEEEec
Confidence 99999995599999996 789999999998875321 11110000000000000 0000000 0000000000
Q ss_pred cccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
...-.+.+++|++++|++++|+|+||||||||+..+ +++ .|++.+.
T Consensus 946 ~~~~~lk~isl~i~~gei~~itG~nGsGKStL~~~~--L~~--~G~~~~~ 991 (1809)
T PRK00635 946 AYQHNLKHIDLSLPRNALTAVTGPSASGKHSLVFDI--LYA--AGNIAYA 991 (1809)
T ss_pred cccccccceeEEecCCcEEEEECCCCCChhHHHHHH--HHh--hccEeee
Confidence 111235578999999999999999999999988877 443 8888765
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-28 Score=268.06 Aligned_cols=192 Identities=20% Similarity=0.222 Sum_probs=135.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ + ..++|+||++...+
T Consensus 338 ~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~----- 400 (556)
T PRK11819 338 LLIDDLSFSLPPG-GIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALD----- 400 (556)
T ss_pred eeecceeEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEEEEeCchhhcC-----
Confidence 4566677777666 99999999999999999999999999999999854 2 15899999731110
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
+ . .++.+++.... .......... ....++.++... ........+| |||||
T Consensus 401 -~----------------~------~tv~e~l~~~~~~~~~~~~~~~---~~~~l~~~~l~~~~~~~~~~~LS--gG~~q 452 (556)
T PRK11819 401 -P----------------N------KTVWEEISGGLDIIKVGNREIP---SRAYVGRFNFKGGDQQKKVGVLS--GGERN 452 (556)
T ss_pred -C----------------C------CCHHHHHHhhcccccccccHHH---HHHHHHhCCCChhHhcCchhhCC--HHHHH
Confidence 0 0 00100000000 0000000000 111233333322 2344456677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC-ceEEe-ecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK-GLVVE-FDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~-G~i~~-~g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|++.. .|+|+|||+++.+.. ||++++|++ |++.. .|+.++
T Consensus 453 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~ 530 (556)
T PRK11819 453 RLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQE 530 (556)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHH
Confidence 9999999999999999999999999999999999998863 489999999999988 999999996 78764 566665
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+.+.
T Consensus 531 ~~~~ 534 (556)
T PRK11819 531 YEED 534 (556)
T ss_pred HHHH
Confidence 5443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-28 Score=269.48 Aligned_cols=179 Identities=22% Similarity=0.347 Sum_probs=131.6
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|+++||++.+| |+++|+|+||||||||+++|+|+++|++|+|.++ ..++|+||++...
T Consensus 355 l~~~s~~i~~G-eiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y~~Q~~~~~-------- 412 (590)
T PRK13409 355 LEVEGGEIYEG-EVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISYKPQYIKPD-------- 412 (590)
T ss_pred EEecceEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEEecccccCC--------
Confidence 55666666666 9999999999999999999999999999999885 1589999974211
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
++.++.+++.... .... ......+.++.++...........|| ||||||++|
T Consensus 413 ---------------------~~~tv~e~l~~~~-~~~~----~~~~~~~~L~~l~l~~~~~~~~~~LS--GGe~QRvai 464 (590)
T PRK13409 413 ---------------------YDGTVEDLLRSIT-DDLG----SSYYKSEIIKPLQLERLLDKNVKDLS--GGELQRVAI 464 (590)
T ss_pred ---------------------CCCcHHHHHHHHh-hhcC----hHHHHHHHHHHCCCHHHHhCCcccCC--HHHHHHHHH
Confidence 0111111110000 0000 00011222334444444555666778 599999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++++.. |||+++|++ ++...|.
T Consensus 465 AraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 465 AACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 9999999999999999999999999999999998743 6899999999999987 999999965 7766665
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.8e-28 Score=267.32 Aligned_cols=189 Identities=22% Similarity=0.252 Sum_probs=132.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+++ + ..++|++|++...+
T Consensus 336 ~~l~~isl~i~~G-e~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~~v~q~~~~~~----- 398 (552)
T TIGR03719 336 LLIDDLSFKLPPG-GIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLAYVDQSRDALD----- 398 (552)
T ss_pred eeeccceEEEcCC-CEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEEEEeCCccccC-----
Confidence 4566666666666 99999999999999999999999999999999854 2 15899999732111
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
+ . .++.+.+..... ........ +....++.++... ........+| |||||
T Consensus 399 -~----------------~------~tv~e~l~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~~LS--gGe~q 450 (552)
T TIGR03719 399 -P----------------N------KTVWEEISGGLDIIQLGKREV---PSRAYVGRFNFKGSDQQKKVGQLS--GGERN 450 (552)
T ss_pred -C----------------C------CcHHHHHHhhccccccCcchH---HHHHHHHhCCCChhHhcCchhhCC--HHHHH
Confidence 0 0 001000000000 00000000 1112223333322 2344456677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeC-ceEEee-cChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDK-GLVVEF-DSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~-G~i~~~-g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. .|||+|||+++.+.. ||++++|++ |++..+ |+.++
T Consensus 451 rv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~ 528 (552)
T TIGR03719 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSE 528 (552)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHH
Confidence 9999999999999999999999999999999999999873 489999999999988 999999997 587644 55544
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 529 ~ 529 (552)
T TIGR03719 529 Y 529 (552)
T ss_pred H
Confidence 4
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.7e-28 Score=222.12 Aligned_cols=209 Identities=23% Similarity=0.270 Sum_probs=152.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~ 275 (602)
-.+++||+++.+| |+++|.||||||||||.++|+|. |++++|+|.++|+|+.++++.+. |..|.+.+|.|.-+-
T Consensus 18 eILkgvnL~v~~G-EvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~-- 94 (251)
T COG0396 18 EILKGVNLTVKEG-EVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAGIFLAFQYPVEIP-- 94 (251)
T ss_pred hhhcCcceeEcCC-cEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcCCEEeecCCccCC--
Confidence 4689999999998 99999999999999999999997 57899999999999999999876 457888888753210
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
-.- ...|+... .| ... ........+.....+.. +.+...+.+.+...+...|||||
T Consensus 95 -----GV~--------~~~fLr~a--~n-~~~-----~~~~~~~~~~~~~~e~~---~~l~~~~~~l~R~vN~GFSGGEk 150 (251)
T COG0396 95 -----GVT--------NSDFLRAA--MN-ARR-----GARGILPEFIKELKEKA---ELLGLDEEFLERYVNEGFSGGEK 150 (251)
T ss_pred -----Cee--------HHHHHHHH--HH-hhh-----ccccccHHHHHHHHHHH---HHcCCCHHHhhcccCCCcCcchH
Confidence 000 00000000 00 000 00000122222222222 23444443333333333347999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i~~~g~~~ 432 (602)
.|..|+.+++.+|++.|||||-|+||.++-+.+.+.++.++ .+.++++|||.-..+.. .|++.+|-+|+|+..|.+
T Consensus 151 KR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~- 229 (251)
T COG0396 151 KRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP- 229 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH-
Confidence 99999999999999999999999999999999999998875 47999999999888876 599999999999999998
Q ss_pred HHh
Q psy3001 433 VLM 435 (602)
Q Consensus 433 ~l~ 435 (602)
++.
T Consensus 230 el~ 232 (251)
T COG0396 230 ELA 232 (251)
T ss_pred HHH
Confidence 554
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-28 Score=271.59 Aligned_cols=189 Identities=21% Similarity=0.305 Sum_probs=131.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..|+|+||++.+| ++++|+|+||||||||+++|+|+++|++|+|.+ |.++ .++|++|++...+
T Consensus 333 ~il~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y~~q~~~~l~----- 395 (635)
T PRK11147 333 QLVKDFSAQVQRG-DKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAYFDQHRAELD----- 395 (635)
T ss_pred EEEcCcEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEEEeCcccccC-----
Confidence 3455666666566 899999999999999999999999999999998 4322 5899999631110
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~Q 356 (602)
+ +.++.+++..... ...... ..+....+..++.. .........|| |||||
T Consensus 396 -~----------------------~~tv~e~l~~~~~~~~~~~~---~~~~~~~l~~~~l~~~~~~~~~~~LS--gGekq 447 (635)
T PRK11147 396 -P----------------------EKTVMDNLAEGKQEVMVNGR---PRHVLGYLQDFLFHPKRAMTPVKALS--GGERN 447 (635)
T ss_pred -C----------------------CCCHHHHHHhhcccccccch---HHHHHHHHHhcCCCHHHHhChhhhCC--HHHHH
Confidence 0 0011111000000 000000 01112222233222 12233445677 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe-CceEEee-cChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD-KGLVVEF-DSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~-~G~i~~~-g~~~~ 433 (602)
|++|||||+.+|++|||||||++||+.+...+.+.++.+ +.|||+|||+++++.. ||++++++ +|++..+ |+.++
T Consensus 448 Rl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~ 525 (635)
T PRK11147 448 RLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHD 525 (635)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHH
Confidence 999999999999999999999999999999999999876 4599999999999987 99999998 8999875 44444
Q ss_pred H
Q psy3001 434 L 434 (602)
Q Consensus 434 l 434 (602)
+
T Consensus 526 y 526 (635)
T PRK11147 526 A 526 (635)
T ss_pred H
Confidence 3
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-28 Score=289.41 Aligned_cols=202 Identities=21% Similarity=0.275 Sum_probs=141.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC---CCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~---~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|||+.+.+| +++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+++.++||+|++....
T Consensus 777 ~iL~~vs~~i~~G-e~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~~~~i~yv~Q~~~~~~-- 849 (1394)
T TIGR00956 777 VILNNVDGWVKPG-TLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSFQRSIGYVQQQDLHLP-- 849 (1394)
T ss_pred EeeeCCEEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhhhcceeeecccccCCC--
Confidence 4566666666666 8999999999999999999999998 78899999999874 246889999999732110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC----cccccCCcCCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSHFGETVTGN 351 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~~~~lsgs 351 (602)
..+.+.+-........+......+......+.++ .+++.+ .++..+..+|
T Consensus 850 ---------------------~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~---~l~L~~~~d~~v~~~~~~LS-- 903 (1394)
T TIGR00956 850 ---------------------TSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIK---LLEMESYADAVVGVPGEGLN-- 903 (1394)
T ss_pred ---------------------CCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH---HcCChhhCCCeeCCCCCCCC--
Confidence 1111111000000000000000111111222222 333322 2333334667
Q ss_pred hhhHHHHHHHHHHhhCCC-eEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccc--ccCCeEEEEeCc-eEE
Q psy3001 352 VGQRQLICLARALLRKTK-ILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTI--IDSDRVLVLDKG-LVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~-iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i--~~~d~i~~l~~G-~i~ 426 (602)
||||||++|||||+.+|+ +|+|||||++||+.++..+.+.|+++ .+|+|||+++|+++.. ..+|++++|++| +++
T Consensus 904 gGqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv 983 (1394)
T TIGR00956 904 VEQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTV 983 (1394)
T ss_pred HHHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEE
Confidence 699999999999999997 99999999999999999999999987 4579999999999974 349999999997 999
Q ss_pred eecChhH
Q psy3001 427 EFDSPSV 433 (602)
Q Consensus 427 ~~g~~~~ 433 (602)
..|++.+
T Consensus 984 ~~G~~~~ 990 (1394)
T TIGR00956 984 YFGDLGE 990 (1394)
T ss_pred EECCccc
Confidence 9998643
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-28 Score=244.87 Aligned_cols=203 Identities=20% Similarity=0.261 Sum_probs=128.1
Q ss_pred hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccc
Q psy3001 334 SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTII 412 (602)
Q Consensus 334 ~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~ 412 (602)
.+.+..+....-..|| |||-||+|||.|++++++++++|||||.||...+-...+.++++.+ +++||+|.||+..+.
T Consensus 200 ~l~L~nvl~r~v~~LS--GGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD 277 (591)
T COG1245 200 RLGLENVLDRDVSELS--GGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLD 277 (591)
T ss_pred HhcchhhhhhhhhhcC--chHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHH
Confidence 4444455555566777 5999999999999999999999999999999999999999999876 699999999999998
Q ss_pred c-CCeEEEEeCceEEeecC---hhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHH------H-HHHHhccccc
Q psy3001 413 D-SDRVLVLDKGLVVEFDS---PSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAA------L-LAVLSKETLN 481 (602)
Q Consensus 413 ~-~d~i~~l~~G~i~~~g~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~-~~~~~~~~~~ 481 (602)
. +|-|.++-. +=-.+|- +......-+..........+.++.+ ..+.|... . ....+-..+.
T Consensus 278 ~lsD~vhI~YG-~pg~YGvvs~p~svr~gIN~yL~Gyl~~EN~R~R~-------~~I~F~~~~~~~~~~~~~lv~y~~~~ 349 (591)
T COG1245 278 YLSDFVHILYG-EPGVYGVVSKPKSVRVGINEYLKGYLPEENVRFRP-------EEIEFEEKPPRDDKARDTLVEYPDLK 349 (591)
T ss_pred HhhheeEEEec-CCccceEeccchHHHHHHHHHHhccCchhcccccc-------cceeeeccCcccccccceeeecchhe
Confidence 8 898887752 1111111 1111000000000000111111100 00000000 0 0000000011
Q ss_pred --ccceee-----EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc-cccc
Q psy3001 482 --AGLVGL-----SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS 553 (602)
Q Consensus 482 --~~~~~l-----~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~ 553 (602)
.+...+ +++.||++|++||||-||||++++|+|.++|++|. ..+ -+++|=||-. --|+
T Consensus 350 k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~~~ 415 (591)
T COG1245 350 KTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPDYD 415 (591)
T ss_pred eecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCCCC
Confidence 112233 35668899999999999999999999999999998 111 2588888844 2378
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
+||++-+
T Consensus 416 gtV~~~l 422 (591)
T COG1245 416 GTVEDLL 422 (591)
T ss_pred CcHHHHH
Confidence 8887654
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=222.53 Aligned_cols=195 Identities=21% Similarity=0.252 Sum_probs=137.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||+..+| |.+||||+||||||||+|+|+|.++|++|+|.++|.-..-+. -..|+-|+-
T Consensus 40 ~~aL~disf~i~~G-e~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~-----lg~Gf~pel--------- 104 (249)
T COG1134 40 FWALKDISFEIYKG-ERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIE-----LGAGFDPEL--------- 104 (249)
T ss_pred EEEecCceEEEeCC-CEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhh-----cccCCCccc---------
Confidence 46899999999998 999999999999999999999999999999999995321111 112222221
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+-+.|-.+...+..-. .++.....++..+ +.. +.+.....-.+.| .|++-|
T Consensus 105 ---------------------TGreNi~l~~~~~G~~---~~ei~~~~~eIie-FaE--LG~fi~~PvktYS--SGM~aR 155 (249)
T COG1134 105 ---------------------TGRENIYLRGLILGLT---RKEIDEKVDEIIE-FAE--LGDFIDQPVKTYS--SGMYAR 155 (249)
T ss_pred ---------------------chHHHHHHHHHHhCcc---HHHHHHHHHHHHH-HHH--HHHHhhCchhhcc--HHHHHH
Confidence 0011100011000000 0011111111111 111 1111222222344 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++.|-|...+|+|||+||..+.-|+.=.+.=.+.++++ .+++|+|+|||++..+.+ |||+++|++|++...|+++++.
T Consensus 156 LaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 156 LAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred HHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 99999999999999999999999998887777777776 567999999999999998 9999999999999999999886
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
+
T Consensus 236 ~ 236 (249)
T COG1134 236 P 236 (249)
T ss_pred H
Confidence 5
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3e-26 Score=197.12 Aligned_cols=190 Identities=23% Similarity=0.345 Sum_probs=139.0
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.+.-.+.|+||++.+| |++-|.||||||||||+.-+.|.+.++ +|++.++++++..++.. ++++|+++|+
T Consensus 13 ~g~cLLa~~n~Tia~G-eivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq~GiLFQD---- 85 (213)
T COG4136 13 PGSCLLANVNFTIAKG-EIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIGILFQD---- 85 (213)
T ss_pred CCceEEEeeeEEecCC-cEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhheeeeecc----
Confidence 3567899999999998 999999999999999999999999885 89999999999877654 5789999998
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+++|...-. -.++.+ .....++- .++.......++..++.......++++||
T Consensus 86 -------~lLFphlsV--------g~Nl~f----------Alp~~~KG-~aRr~~a~aAL~~~gL~g~f~~dP~tlSG-- 137 (213)
T COG4136 86 -------ALLFPHLSV--------GQNLLF----------ALPATLKG-NARRNAANAALERSGLDGAFHQDPATLSG-- 137 (213)
T ss_pred -------ccccccccc--------ccceEE----------ecCccccc-HHHHhhHHHHHHHhccchhhhcChhhcCc--
Confidence 555421000 001111 01111110 11222223344466667777888889994
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh--ccccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE--FAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~--~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|||-||++-|+|+..|+.++||||+|.||..-+..+.+..... ..+..+|.||||...+..-.||+.+
T Consensus 138 GQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 138 GQRARVALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred chHHHHHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 9999999999999999999999999999986665555544332 2478899999999988755555544
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-27 Score=263.45 Aligned_cols=120 Identities=35% Similarity=0.614 Sum_probs=115.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|++++ .+++|++|+||||||++|++||++||.
T Consensus 351 L~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~ 429 (529)
T TIGR02868 351 LDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLR 429 (529)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHh
Confidence 4579999999999999999999999999999999999999999999999999 999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++|++++|++.+++++++.++|+||||.|||+|.||
T Consensus 430 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 471 (529)
T TIGR02868 430 LGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARL 471 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcC
Confidence 75 457999999999999999999999999999999999987
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-26 Score=276.30 Aligned_cols=200 Identities=21% Similarity=0.257 Sum_probs=139.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
..++|+|+.+.+| +++||+|+||||||||+++|+|..++ .+|+|.++|.+.. ....++.++|++|++.
T Consensus 894 ~iL~~vs~~i~~G-el~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~~---~~~~~~~igyv~Q~d~------ 963 (1470)
T PLN03140 894 QLLREVTGAFRPG-VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKK---QETFARISGYCEQNDI------ 963 (1470)
T ss_pred eEeeCcEEEEECC-eEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccCC---hHHhhhheEEEccccc------
Confidence 4677777777777 89999999999999999999999874 7899999998764 2446778999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccc--ccccccccchhHHHHHHHHHHHHHHhhcccCCccccc-----CCcCC
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK--PLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF-----GETVT 349 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~ls 349 (602)
++. ..+.. +.+. .....+......+.. ....+.++.+++.+..... ...+|
T Consensus 964 -----~~~------------~lTV~--E~L~~~a~lr~~~~~~~~~~~---~~v~~vl~~lgL~~~~~~~vg~~~~~~LS 1021 (1470)
T PLN03140 964 -----HSP------------QVTVR--ESLIYSAFLRLPKEVSKEEKM---MFVDEVMELVELDNLKDAIVGLPGVTGLS 1021 (1470)
T ss_pred -----cCC------------CCcHH--HHHHHHHHhCCCCCCCHHHHH---HHHHHHHHHCCChhHhCCccCCCCCCCcC
Confidence 110 00000 1110 000000000001111 1122223333333222211 13566
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeC-ceE
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDK-GLV 425 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~-G~i 425 (602)
||||||++|||+|+.+|++|+|||||++||+.++..+.+.|+++. +|+|||+++|+++. +.. +|++++|++ |++
T Consensus 1022 --gGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~ 1099 (1470)
T PLN03140 1022 --TEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQV 1099 (1470)
T ss_pred --HHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEE
Confidence 699999999999999999999999999999999999999999874 47999999999984 545 999999996 899
Q ss_pred EeecChh
Q psy3001 426 VEFDSPS 432 (602)
Q Consensus 426 ~~~g~~~ 432 (602)
+..|+..
T Consensus 1100 v~~G~~~ 1106 (1470)
T PLN03140 1100 IYSGPLG 1106 (1470)
T ss_pred EEECCcc
Confidence 9998764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-27 Score=264.32 Aligned_cols=122 Identities=43% Similarity=0.690 Sum_probs=117.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++|||||||||||||+++|+|+++|++|+|.+||+||+.++...+|++|+||||||++|++||++||
T Consensus 344 vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI 423 (567)
T COG1132 344 VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENI 423 (567)
T ss_pred cccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHHHHHhccEEcccceeecccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.++.+ .++|++++|++.+++++++.++|+||||.|||+|.+|
T Consensus 424 ~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~L 466 (567)
T COG1132 424 ALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNL 466 (567)
T ss_pred hcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccC
Confidence 97755 7999999999999999999999999999999999987
|
|
| >KOG0057|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.6e-27 Score=245.21 Aligned_cols=120 Identities=36% Similarity=0.555 Sum_probs=114.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++.+||+|++||+|||+|+|||||||++|+|+|+++ ++|+|.|||+||++++++.+|+-|||||||..||++||..||.
T Consensus 368 L~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~ 446 (591)
T KOG0057|consen 368 LKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIK 446 (591)
T ss_pred ecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhh
Confidence 346999999999999999999999999999999999 9999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++.. .++|++.+++++++++|.+.++|+||+|.|||+|-.|
T Consensus 447 YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~L 488 (591)
T KOG0057|consen 447 YGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLML 488 (591)
T ss_pred cCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhccccc
Confidence 7654 6999999999999999999999999999999999754
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=227.23 Aligned_cols=229 Identities=25% Similarity=0.337 Sum_probs=152.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CCcccccccC------C--CCCCC------CCCCCcEEEe
Q psy3001 143 QPFKITQTLNWLVRMTSDVETNIVAVERIKEYGE------TPQEAEWVND------K--KPKDE------WPEKGEVEFK 202 (602)
Q Consensus 143 ~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~------~~~~~~~~~~------~--~~~~~------~~~~~~i~~~ 202 (602)
...++...++++...+..+.+..+...|+.++.. .+++.+.... . ..... ....+.+.++
T Consensus 331 aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~ 410 (604)
T COG4178 331 AFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLS 410 (604)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeec
Confidence 3445566788888999999999999999998863 2222211100 0 00000 0112345566
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCcee
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVF 282 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~ 282 (602)
+.+|.+++| +.+.|.|+||||||||+|+|+|+.|..+|+|..-. ...+-|+||. |++
T Consensus 411 ~l~~~v~~G-~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~-----------PY~ 467 (604)
T COG4178 411 ELNFEVRPG-ERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQR-----------PYL 467 (604)
T ss_pred cceeeeCCC-CEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCC-----------CCC
Confidence 666666666 88999999999999999999999999999997642 1246788886 332
Q ss_pred Eeeecccceeeeccccceeecccccccccccccch---hHHHH-----HHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 283 IFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSN---LQRFY-----VATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
- +++++ +.++.+.... ..+.. ....+..++++. .......|| +||
T Consensus 468 p-------------~GtLr------e~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~------~~~W~~vLS--~GE 520 (604)
T COG4178 468 P-------------QGTLR------EALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE------EDRWDRVLS--GGE 520 (604)
T ss_pred C-------------CccHH------HHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc------cCcHhhhcC--hhH
Confidence 2 22221 1111111110 00000 011111222222 222344567 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|||+++||.|+++|++++|||+||+||++++..+.+.+++...+.|||.|+||.....-.++.+.+.
T Consensus 521 qQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 521 QQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999999999999999999999999999999888999999999998877655554443
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.6e-27 Score=260.72 Aligned_cols=120 Identities=33% Similarity=0.543 Sum_probs=115.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||||+||||||||+++|+|++ |++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 366 L~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~ 444 (588)
T PRK11174 366 AGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVL 444 (588)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhh
Confidence 44799999999999999999999999999999999 89999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ++.++|++++|++.++++++++++|+||||.|||+|.||
T Consensus 445 ~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~L 486 (588)
T PRK11174 445 LGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGL 486 (588)
T ss_pred cCCCCCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCC
Confidence 76 457999999999999999999999999999999999987
|
|
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=202.22 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=136.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC----eecCCCChHH----Hhhccceecccch
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG----VDIRTLGLHT----LRSRLTIIPQVLA 270 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g----~~~~~~~~~~----~~~~i~~v~Q~~~ 270 (602)
..++|+||+...| ||+++=|+||||||||++.|.+.|.|++|+|.+.- .|+....+.+ .|+.||||.|...
T Consensus 25 pV~~~vslsV~aG-ECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLR 103 (235)
T COG4778 25 PVLRNVSLSVNAG-ECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLR 103 (235)
T ss_pred eeeeceeEEecCc-cEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHH
Confidence 4799999999998 99999999999999999999999999999999842 3444445443 3578999999432
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVT 349 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~ls 349 (602)
.+ |-.- .--...+++-+ .....+.........+. .+.. ..+....+.+.|
T Consensus 104 vi-------PRV~--------------aLdVvaePll~-----~gv~~~~a~~~a~~Ll~---rLnlperLW~LaPaTFS 154 (235)
T COG4778 104 VI-------PRVS--------------ALDVVAEPLLA-----RGVPREVARAKAADLLT---RLNLPERLWSLAPATFS 154 (235)
T ss_pred hc-------cCcc--------------hHHHHHhHHHH-----cCCCHHHHHHHHHHHHH---HcCCCHHHhcCCCcccC
Confidence 11 1100 00000011100 11111222222222222 2222 223444566777
Q ss_pred CChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 350 GNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 350 gs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
|||+||+.|||.++.|-+||+|||||++||..++..+.+.+++.+ .|..+|=|-||-+.-.. |||++.+.
T Consensus 155 --GGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 155 --GGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred --CchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 599999999999999999999999999999999999999998864 57999999999888777 99998775
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.2e-26 Score=223.44 Aligned_cols=97 Identities=25% Similarity=0.263 Sum_probs=81.9
Q ss_pred HHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeee
Q psy3001 331 RLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAH 406 (602)
Q Consensus 331 ~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH 406 (602)
.++.++... ........+| +|||||++|||||+.+| ++|||||||++||+.+...+.+.+++.. ++.|+|+|||
T Consensus 120 ~l~~~~l~~~~~~~~~~~LS--gG~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH 197 (226)
T cd03270 120 FLVDVGLGYLTLSRSAPTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEH 197 (226)
T ss_pred HHHHCCCCcccccCccCcCC--HHHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEe
Confidence 344444443 2455666777 69999999999999998 5999999999999999999999998764 4789999999
Q ss_pred cccccccCCeEEEE------eCceEEeec
Q psy3001 407 RLNTIIDSDRVLVL------DKGLVVEFD 429 (602)
Q Consensus 407 ~l~~i~~~d~i~~l------~~G~i~~~g 429 (602)
+++.+..||++++| ++|+|+++|
T Consensus 198 ~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 198 DEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99988669999999 999999875
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.1e-26 Score=261.30 Aligned_cols=121 Identities=29% Similarity=0.470 Sum_probs=116.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+|+|+|+++|++|+|.+||+|++.++++++|++|+||||||++|++||++||.
T Consensus 469 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 548 (686)
T TIGR03797 469 LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA 548 (686)
T ss_pred eeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+.++++++++++.++++++++++|+||||.+|++|.||
T Consensus 549 ~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~L 589 (686)
T TIGR03797 549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTL 589 (686)
T ss_pred cCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 76558899999999999999999999999999999999987
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-25 Score=240.86 Aligned_cols=188 Identities=21% Similarity=0.262 Sum_probs=132.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...|+++||.+.+| +.+||+||||+|||||+|+|+|...|.+|+|.+.-. -.+||.+|+....
T Consensus 335 ~~l~~~~s~~i~~g-~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~igyf~Q~~~~l----- 397 (530)
T COG0488 335 RLLLKDLSFRIDRG-DRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIGYFDQHRDEL----- 397 (530)
T ss_pred ceeecCceEEecCC-CEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEEEEEehhhhc-----
Confidence 34556666666555 889999999999999999999999999999988641 2589999963211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Q 356 (602)
..+.++.+.+.. ...... .......+...+..+ .....-..|| ||||-
T Consensus 398 -----------------------~~~~t~~d~l~~-~~~~~~-----e~~~r~~L~~f~F~~~~~~~~v~~LS--GGEk~ 446 (530)
T COG0488 398 -----------------------DPDKTVLEELSE-GFPDGD-----EQEVRAYLGRFGFTGEDQEKPVGVLS--GGEKA 446 (530)
T ss_pred -----------------------CccCcHHHHHHh-hCcccc-----HHHHHHHHHHcCCChHHHhCchhhcC--HhHHH
Confidence 011111111000 000000 111112222222211 1222333566 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEee-cChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF-DSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~-g~~~~l 434 (602)
|+.+|+.++.+|.+|||||||++||.++...+.++|..+. .|||+||||.+++.. |++++++++ ++..+ |+++++
T Consensus 447 Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y 523 (530)
T COG0488 447 RLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDY 523 (530)
T ss_pred HHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHH
Confidence 9999999999999999999999999999999999998864 499999999999999 999999999 77766 666665
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
.+
T Consensus 524 ~~ 525 (530)
T COG0488 524 LE 525 (530)
T ss_pred HH
Confidence 43
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-26 Score=239.69 Aligned_cols=122 Identities=34% Similarity=0.565 Sum_probs=116.3
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
...+++||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++...+..++|++++||||+|++|++|+|+|
T Consensus 335 ~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~gTireN 414 (559)
T COG4988 335 PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIREN 414 (559)
T ss_pred cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHeeeeCCCCccccccHHHH
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+..... .+||+++++++.++|.++++. |+|+||.+||||.+|
T Consensus 415 i~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~L 457 (559)
T COG4988 415 ILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGL 457 (559)
T ss_pred hhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCC
Confidence 986544 789999999999999999999 999999999999986
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.5e-26 Score=253.86 Aligned_cols=121 Identities=33% Similarity=0.516 Sum_probs=116.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++++.+|++|+||||||++|++|+++||.
T Consensus 357 l~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~ 436 (592)
T PRK10790 357 LQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVT 436 (592)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHH
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+....++++++++++.+|++++++++|+||||.++++|.+|
T Consensus 437 ~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~L 477 (592)
T PRK10790 437 LGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNL 477 (592)
T ss_pred hCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCC
Confidence 87777899999999999999999999999999999999986
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.9e-25 Score=199.83 Aligned_cols=136 Identities=33% Similarity=0.508 Sum_probs=101.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++|+|+.+.+| ++++|+|+||||||||+++|+|.++|++|+|.++|.++...+....++.+++++|++..
T Consensus 1 L~~v~~~i~~g-~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~--------- 70 (137)
T PF00005_consen 1 LKNVSLEIKPG-EIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQL--------- 70 (137)
T ss_dssp EEEEEEEEETT-SEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCH---------
T ss_pred CCceEEEEcCC-CEEEEEccCCCccccceeeeccccccccccccccccccccccccccccccccccccccc---------
Confidence 58999999998 99999999999999999999999999999999999999998888999999999997221
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcc-cCCcccccCCcCCCChhhHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVS-RSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+ .. .++.+ + .......+.++.+.... ....+......+| +|||||++
T Consensus 71 --~-------------~~-----~tv~~--------~--~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS--~Ge~~rl~ 118 (137)
T PF00005_consen 71 --F-------------PG-----LTVRE--------N--ESDERIEEVLKKLGLEDLLDRKIGQRASSLS--GGEKQRLA 118 (137)
T ss_dssp --H-------------TT-----SBHHH--------H--HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSC--HHHHHHHH
T ss_pred --c-------------cc-----ccccc--------c--cccccccccccccccccccccccccccchhh--HHHHHHHH
Confidence 1 00 00000 0 11111222223222211 1223333446677 69999999
Q ss_pred HHHHHhhCCCeEEEecccc
Q psy3001 360 LARALLRKTKILILDEATA 378 (602)
Q Consensus 360 lAral~~~p~iliLDEpts 378 (602)
|||||+++|+++|||||||
T Consensus 119 la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 119 LARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHHHHTTSSEEEEESTTT
T ss_pred HHHHHHcCCCEEEEeCCCC
Confidence 9999999999999999996
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.4e-25 Score=212.17 Aligned_cols=164 Identities=21% Similarity=0.266 Sum_probs=121.2
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC---------ceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD---------GTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~---------G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
+++++.+.+| +++|+||||||||||+++|+|+.+|.. |++.++|.+... ...+..+++++|++..+
T Consensus 14 ~~~~l~~~~g--~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~ 88 (197)
T cd03278 14 DKTTIPFPPG--LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR 88 (197)
T ss_pred CCeeeecCCC--cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc
Confidence 5567777664 899999999999999999999986653 467777776543 22357899999985432
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ . . . . . ....+.++ . ..........+| +
T Consensus 89 ~-----------~-----------~---~------------~----~---~~~~~~l~---~---~~~~~~~~~~LS--~ 116 (197)
T cd03278 89 Y-----------S-----------I---I------------S----Q---GDVSEIIE---A---PGKKVQRLSLLS--G 116 (197)
T ss_pred e-----------e-----------E---E------------e----h---hhHHHHHh---C---CCccccchhhcC--H
Confidence 0 0 0 0 0 0 01111111 1 111233344566 6
Q ss_pred hhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 353 GQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 353 Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
|||||++|||+++ .+|++++|||||++||+.....+.+.+++..++.|||+|||+++.+..||+++.+..
T Consensus 117 G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 117 GEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred HHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 9999999999997 467999999999999999999999999988767899999999998766999998863
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.3e-26 Score=236.57 Aligned_cols=136 Identities=32% Similarity=0.534 Sum_probs=123.4
Q ss_pred HHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEec
Q psy3001 467 FSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546 (602)
Q Consensus 467 ~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~ 546 (602)
+.++.+.|...+...+.++||++++||+|||+|+||||||||+++|+|.++|++|+|.++|.+++.++.+++|+.+++++
T Consensus 339 ~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~ 418 (573)
T COG4987 339 LRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLT 418 (573)
T ss_pred eccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhc
Confidence 33444455455545566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccccchhcccCCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 547 QDPVLFSGTLRLNLDPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 547 Qdp~lf~~Tv~~nl~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|.+++|++|+|+||... ++.+||+++++|+.++|.++++..|+||+|.+||+|.+|
T Consensus 419 Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~L 475 (573)
T COG4987 419 QRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRL 475 (573)
T ss_pred cchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcC
Confidence 99999999999999744 457999999999999999999999999999999999876
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-26 Score=229.64 Aligned_cols=348 Identities=19% Similarity=0.220 Sum_probs=192.8
Q ss_pred CCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEECCeecCCCChHHH----h---hccce
Q psy3001 194 PEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRTLGLHTL----R---SRLTI 264 (602)
Q Consensus 194 ~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i~g~~~~~~~~~~~----~---~~i~~ 264 (602)
...+...|.|-++.+-.| ..+++|||||-|||||++.|+. +--|..=.++++-+.+..-+...+ + ++..+
T Consensus 273 SA~Gk~LFvnA~L~Iv~G-RRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl~aD~kRl~l 351 (807)
T KOG0066|consen 273 SAQGKLLFVNASLTIVYG-RRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVLKADKKRLAL 351 (807)
T ss_pred ecccceeeeccceEEEec-ceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHHHhhHHHHHH
Confidence 345778899999888777 8899999999999999999875 223444444444433321111100 0 01111
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYS 342 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 342 (602)
+..+...+- .+.++.....+.+.+ .+..+... ..+.++....+..++-++-..
T Consensus 352 Leee~~L~~--------------------q~e~Gd~taaErl~~-----v~~ELraiGA~sAEarARRILAGLGFskEMQ 406 (807)
T KOG0066|consen 352 LEEEAKLMS--------------------QIEEGDTTAAERLKE-----VADELRAIGADSAEARARRILAGLGFSKEMQ 406 (807)
T ss_pred HHHHHHHHH--------------------HHHcCchHHHHHHHH-----HHHHHHHhccccchhHHHHHHhhcCCChhHh
Confidence 111000000 000000000000000 00000000 111222223333343333222
Q ss_pred -ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEE
Q psy3001 343 -HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVL 420 (602)
Q Consensus 343 -~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l 420 (602)
......| ||.|-||+|||||...|-+|.|||||++||.....|+-..|..+. +|.++|||+-.++.+ |+.|+.|
T Consensus 407 ~rPt~kFS--GGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHL 482 (807)
T KOG0066|consen 407 ERPTTKFS--GGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHL 482 (807)
T ss_pred cCCccccC--CceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhh
Confidence 2223455 699999999999999999999999999999999999988887764 699999999999998 9999999
Q ss_pred eCceEEeecChhHHhhc----c----hhHHHHHHHhhh-h---------------hHHHHHHHhh----------hhhHH
Q psy3001 421 DKGLVVEFDSPSVLMKN----K----ASIFYSMAKDAG-L---------------AWLAVRLETV----------GNLIT 466 (602)
Q Consensus 421 ~~G~i~~~g~~~~l~~~----~----~~~~~~~~~~~~-~---------------~~~~~~~~~~----------~~~~~ 466 (602)
++-++-.+.....++.. . ...|...-+... + ..+....... ....+
T Consensus 483 D~qkLhyYrGNY~~FKKmY~Qk~~e~~K~yekQeK~LkelKa~GkS~KqAEkq~Ke~ltrKq~K~~~Knq~dded~gapE 562 (807)
T KOG0066|consen 483 DNQKLHYYRGNYTLFKKMYAQKMQEHEKNYEKQEKQLKELKAEGKSAKQAEKQVKEQLTRKQKKGGKKNQNDDEDAGAPE 562 (807)
T ss_pred hhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHhccccccCccccccCHH
Confidence 99887544322222211 0 001111000000 0 0000000000 00000
Q ss_pred HHHHHHHH----------------Hhccc---------ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 467 FSAALLAV----------------LSKET---------LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 467 ~~~~~~~~----------------~~~~~---------~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
+...-..| +.... .....++|-|.--.+|+||||||.|||||+++|.|-++|+.|
T Consensus 563 LL~RpKEY~VkF~FPep~~L~PPvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G 642 (807)
T KOG0066|consen 563 LLQRPKEYSVKFQFPEPTKLNPPVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG 642 (807)
T ss_pred HHhCchheEEEEecCCCCCCCCCeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcc
Confidence 00000000 00000 011235666666778999999999999999999999999999
Q ss_pred eEEECCeecCCCChhhhhccceEecCCc--cc-cccchhcccCCCCCCcHHHHHHHHHHcCCCc
Q psy3001 522 TIIIDGVDIRTLGLHTLRSRLTIIPQDP--VL-FSGTLRLNLDPVGESSDEAIWKALELAHLNT 582 (602)
Q Consensus 522 ~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~l-f~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~ 582 (602)
+.+-+. |-+||+.-|.. .| -..|.-+.+...-..+.++...+|..+||..
T Consensus 643 E~RKnh-----------rL~iG~FdQh~~E~L~~Eetp~EyLqr~FNlpyq~ARK~LG~fGL~s 695 (807)
T KOG0066|consen 643 ELRKNH-----------RLRIGWFDQHANEALNGEETPVEYLQRKFNLPYQEARKQLGTFGLAS 695 (807)
T ss_pred hhhccc-----------eeeeechhhhhHHhhccccCHHHHHHHhcCCChHHHHHHhhhhhhhh
Confidence 876543 55799998865 22 2235444443222344567778888887754
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.2e-26 Score=257.31 Aligned_cols=121 Identities=31% Similarity=0.570 Sum_probs=116.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||+|+||||||||+++|+|+++|++|+|.+||+|++.++++++|++|+||||||++|++||++||.
T Consensus 490 L~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~ 569 (708)
T TIGR01193 490 LSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLL 569 (708)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|.||||.|+++|.+|
T Consensus 570 l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~L 612 (708)
T TIGR01193 570 LGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSI 612 (708)
T ss_pred ccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCC
Confidence 65 457899999999999999999999999999999999987
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.6e-26 Score=229.84 Aligned_cols=122 Identities=30% Similarity=0.517 Sum_probs=116.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++.+||.+||+||+|||||||.|+|.|..+|.+|+|++||-|++.++++++-+.|||.|||.+||+|||.+||
T Consensus 351 il~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~GTIaeNI 430 (580)
T COG4618 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVELFDGTIAENI 430 (580)
T ss_pred ceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCcccceecCCcHHHHH
Confidence 35579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.-. ++.+++.|.+|++.++.||++-++|+||||.||++|+.|
T Consensus 431 aRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~L 473 (580)
T COG4618 431 ARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATL 473 (580)
T ss_pred HhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCC
Confidence 754 467888899999999999999999999999999999986
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=9.9e-26 Score=256.90 Aligned_cols=121 Identities=27% Similarity=0.456 Sum_probs=116.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 495 L~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~ 574 (710)
T TIGR03796 495 IENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLT 574 (710)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhh
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+||||.++|+|.||
T Consensus 575 l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~L 616 (710)
T TIGR03796 575 LWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANL 616 (710)
T ss_pred CCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCC
Confidence 653 57899999999999999999999999999999999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.4e-25 Score=254.61 Aligned_cols=121 Identities=30% Similarity=0.526 Sum_probs=115.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|+++++.+.+|++|+||||||++|++|||+||.
T Consensus 497 L~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~ 576 (711)
T TIGR00958 497 LKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIA 576 (711)
T ss_pred ccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+. +..++|+++++++.++++++++++|+||||.+|++|.+|
T Consensus 577 ~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~L 618 (711)
T TIGR00958 577 YGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQL 618 (711)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcC
Confidence 65 456899999999999999999999999999999999986
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-24 Score=194.41 Aligned_cols=179 Identities=22% Similarity=0.270 Sum_probs=128.0
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
....|.++||++.+| |.+-|.||||||||||+++|+|+.+|++|+|.++|.++.... +..++.+.|+-..+..
T Consensus 14 e~~lf~~L~f~l~~G-e~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~-~~~~~~l~yLGH~~gi----- 86 (209)
T COG4133 14 ERTLFSDLSFTLNAG-EALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR-ESYHQALLYLGHQPGI----- 86 (209)
T ss_pred cceeecceeEEEcCC-CEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccch-hhHHHHHHHhhccccc-----
Confidence 457899999999999 999999999999999999999999999999999998887643 2335666666543211
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHH--HHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV--ATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
...-+..+++.+ .+.+.. ......+.+..+++.......-..|| .||
T Consensus 87 ------------------------K~eLTa~ENL~F-----~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LS--AGQ 135 (209)
T COG4133 87 ------------------------KTELTALENLHF-----WQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLS--AGQ 135 (209)
T ss_pred ------------------------cchhhHHHHHHH-----HHHHhCCCchhhHHHHHHHcCcccccccchhhcc--hhH
Confidence 000011111000 001111 11222333445555444443444566 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh-ccccEEEEeeeccccccc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE-FAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~-~~~~tvi~itH~l~~i~~ 413 (602)
|+||||||..+..+++.|||||+++||.+.+..+...+... .+|..||..||..-.+..
T Consensus 136 qRRvAlArL~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~~ 195 (209)
T COG4133 136 QRRVALARLWLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIAS 195 (209)
T ss_pred HHHHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCCc
Confidence 99999999999999999999999999999999998888765 457889999999776654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.1e-25 Score=248.98 Aligned_cols=121 Identities=28% Similarity=0.461 Sum_probs=115.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++||.
T Consensus 359 l~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 438 (582)
T PRK11176 359 LRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIA 438 (582)
T ss_pred ccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCHHHHHhhceEEccCceeecchHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-C-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-G-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. + ..++++++++++.++++++++++|+||||.+|++|.+|
T Consensus 439 ~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~L 481 (582)
T PRK11176 439 YARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLL 481 (582)
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcC
Confidence 64 2 36899999999999999999999999999999999986
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-25 Score=253.71 Aligned_cols=121 Identities=39% Similarity=0.647 Sum_probs=116.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||||+||||||||+++|+|+++|++|+|.+||+|++.++.+++|+.|+||||||++|++||++||.
T Consensus 481 L~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~ 560 (694)
T TIGR03375 481 LDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIA 560 (694)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCC-CcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
...+ .++++++++++.++++++++++|+||||.++++|.||
T Consensus 561 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 561 LGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred CCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 7654 7899999999999999999999999999999999987
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-24 Score=214.25 Aligned_cols=102 Identities=26% Similarity=0.349 Sum_probs=86.0
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhC---CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRK---TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.++.+++.. .......++| |||+||++|||+|+++ |+++||||||++||+.....+.+.++++. .+.|+|
T Consensus 149 ~~~~L~~vgL~~l~l~~~~~~LS--gGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvI 226 (261)
T cd03271 149 KLQTLCDVGLGYIKLGQPATTLS--GGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVV 226 (261)
T ss_pred HHHHHHHcCCchhhhcCccccCC--HHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344455555554 2455566777 6999999999999996 79999999999999999999999998865 478999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecCh
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSP 431 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~ 431 (602)
+|+|+++.+..||++++| ++|++++.|++
T Consensus 227 iitH~~~~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 227 VIEHNLDVIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred EEeCCHHHHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 999999998779999999 89999998864
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.6e-25 Score=244.18 Aligned_cols=121 Identities=36% Similarity=0.615 Sum_probs=115.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|+++++.+++|++++||||||++|++||++|+.
T Consensus 338 l~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~ti~~Ni~ 417 (529)
T TIGR02857 338 LRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIR 417 (529)
T ss_pred ccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHHhheEEEcCCCcccCcCHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 418 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~L 459 (529)
T TIGR02857 418 LARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGL 459 (529)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccC
Confidence 65 456899999999999999999999999999999999886
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.9e-25 Score=245.28 Aligned_cols=120 Identities=33% Similarity=0.483 Sum_probs=114.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|+.|+||||||++|++|+++|+.
T Consensus 356 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~ 435 (574)
T PRK11160 356 LKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLL 435 (574)
T ss_pred eecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++++ |+||||.+|++|.+|
T Consensus 436 ~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 436 LAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred cCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 65 45789999999999999999999 999999999999986
|
|
| >KOG0056|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.8e-25 Score=225.37 Aligned_cols=122 Identities=33% Similarity=0.542 Sum_probs=116.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++.+|+.+|+|||+|+||||++++|+|+++.++|+|.|||+||+....+.+|+.||+||||..||++||..||
T Consensus 553 vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNI 632 (790)
T KOG0056|consen 553 VLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNI 632 (790)
T ss_pred eeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeehe
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.+. +.+++||+.+|++.+++++-+-++|.||.|.|||+|-.|
T Consensus 633 ryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkL 675 (790)
T KOG0056|consen 633 RYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKL 675 (790)
T ss_pred eecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhccccc
Confidence 865 457999999999999999999999999999999999764
|
|
| >KOG0061|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.5e-24 Score=237.48 Aligned_cols=205 Identities=23% Similarity=0.319 Sum_probs=151.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
.+..++|||....+| |+.||+||||||||||+++|+|-.+. .+|+|.+||++ .+.+.+++..+||+|+
T Consensus 42 ~k~iL~~vsg~~~~G-el~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~~~~~~s~yV~Qd----- 112 (613)
T KOG0061|consen 42 TKTILKGVSGTAKPG-ELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSRSFRKISGYVQQD----- 112 (613)
T ss_pred cceeeeCcEEEEecC-eEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---CchhhhhheeEEEccc-----
Confidence 356899999999998 99999999999999999999999975 68999999953 3567789999999997
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccc--cccccccccchhHHHHHHHHHHHHHHhhcccCC----cccc-cCC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVATSRQLKRLESVSRSP----IYSH-FGE 346 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~-~~~ 346 (602)
..++ .++...|.+ .+.+..+.....++. ..+..+.+..+++.. .++. ...
T Consensus 113 ------D~l~--------------~~LTV~EtL~f~A~lrlp~~~~~~~k---~~~V~~vi~~LgL~~~~~t~ig~~~~r 169 (613)
T KOG0061|consen 113 ------DVLL--------------PTLTVRETLRFSALLRLPSSLSKEEK---RERVEEVISELGLEKCADTLIGNPGIR 169 (613)
T ss_pred ------cccc--------------ccccHHHHHHHHHHhcCCCCCCHHHH---HHHHHHHHHHcCChhhccceecCCCCC
Confidence 2221 111111211 111111111111222 222333333444332 2221 112
Q ss_pred cCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccc-ccc-CCeEEEEeCc
Q psy3001 347 TVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT-IID-SDRVLVLDKG 423 (602)
Q Consensus 347 ~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~-i~~-~d~i~~l~~G 423 (602)
.+| ||||+||++|.-|+.||.||+||||||+||..++..+.+.|+++. +|+|||+.=|.++. +.+ .|++++|.+|
T Consensus 170 giS--GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G 247 (613)
T KOG0061|consen 170 GLS--GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEG 247 (613)
T ss_pred ccc--cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCC
Confidence 355 699999999999999999999999999999999999999999975 48999999999975 445 9999999999
Q ss_pred eEEeecChhHHh
Q psy3001 424 LVVEFDSPSVLM 435 (602)
Q Consensus 424 ~i~~~g~~~~l~ 435 (602)
+++-.|+++++.
T Consensus 248 ~~vy~G~~~~~~ 259 (613)
T KOG0061|consen 248 EVVYSGSPRELL 259 (613)
T ss_pred cEEEecCHHHHH
Confidence 999999987664
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-24 Score=242.90 Aligned_cols=121 Identities=33% Similarity=0.514 Sum_probs=115.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++++.++.+++|++++||||||++|++|+++||.
T Consensus 348 l~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~ 427 (571)
T TIGR02203 348 LDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIA 427 (571)
T ss_pred ccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCHHHHHhhceEEccCcccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.+++++++.++|+||||.++++|.+|
T Consensus 428 ~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~L 470 (571)
T TIGR02203 428 YGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLL 470 (571)
T ss_pred cCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcC
Confidence 653 57899999999999999999999999999999999886
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-24 Score=241.83 Aligned_cols=121 Identities=35% Similarity=0.512 Sum_probs=115.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|++|+||||||++|++|+++||.
T Consensus 351 L~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~ 430 (588)
T PRK13657 351 VEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIR 430 (588)
T ss_pred ecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 431 ~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~L 472 (588)
T PRK13657 431 VGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQL 472 (588)
T ss_pred cCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCC
Confidence 65 456899999999999999999999999999999999886
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=3e-24 Score=239.54 Aligned_cols=121 Identities=37% Similarity=0.606 Sum_probs=115.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.+||.+++.++.+++|++++|+||||++|++|+++||.
T Consensus 356 L~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~ 435 (576)
T TIGR02204 356 LDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIR 435 (576)
T ss_pred ccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+. +..++++++++++.+++.++++++|+|+||.++++|.+|
T Consensus 436 ~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~L 477 (576)
T TIGR02204 436 YGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTL 477 (576)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcC
Confidence 64 346889999999999999999999999999999999886
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >KOG0059|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.6e-24 Score=244.73 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=154.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC-ChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL-GLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~-~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++++|+.++++ |+.|+.|+|||||||++|++.|..+|++|++.++|.++..- +....++.+||+||.-...-
T Consensus 580 Av~~ls~~V~~g-ecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~----- 653 (885)
T KOG0059|consen 580 AVRGLSFAVPPG-ECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWE----- 653 (885)
T ss_pred hhcceEEEecCC-ceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhh-----
Confidence 688999999998 99999999999999999999999999999999999998764 44468999999999611100
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhH--HHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQ--RFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
.-+. .+.++ ......++. +.... ....++.+++.+.....-..+| ||+|+
T Consensus 654 ------------------~lT~--rEhL~---~~arlrG~~~~di~~~---v~~ll~~~~L~~~~~~~~~~yS--gG~kR 705 (885)
T KOG0059|consen 654 ------------------ELTG--REHLE---FYARLRGLPRSDIGSA---IEKLLRLVGLGPYANKQVRTYS--GGNKR 705 (885)
T ss_pred ------------------hccH--HHHHH---HHHHHcCCChhHHHHH---HHHHHHHcCChhhhccchhhCC--Ccchh
Confidence 0000 00000 000000000 11111 1222334444443444444566 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc-cEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+++|-|++.+|++++|||||+++||.+++.+++.+++..++ +.+|+.||.+++.+. |||+.+|.+|++...|+++++
T Consensus 706 kLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~L 785 (885)
T KOG0059|consen 706 RLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQEL 785 (885)
T ss_pred hHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHH
Confidence 999999999999999999999999999999999999998765 599999999999998 999999999999999999987
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
-.
T Consensus 786 Ks 787 (885)
T KOG0059|consen 786 KS 787 (885)
T ss_pred Hh
Confidence 53
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.3e-24 Score=206.81 Aligned_cols=171 Identities=17% Similarity=0.085 Sum_probs=112.0
Q ss_pred CceEEEEeccCCChhHHHHHHhc-ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccc
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g-~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~ 290 (602)
+++++|+|+||||||||+++|++ ++.+..+....+ .....+........+++++|++...+.
T Consensus 28 ~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v~~~f~~~~~~~~---------------- 90 (213)
T cd03279 28 NGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEVSFTFQLGGKKYR---------------- 90 (213)
T ss_pred cCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEEEEEEEECCeEEE----------------
Confidence 37999999999999999999995 555554544432 111122222334556666665321110
Q ss_pred eeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh----
Q psy3001 291 VLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR---- 366 (602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~---- 366 (602)
.. + . .....+.+..... +...............+| +||+||+++|||++.
T Consensus 91 ---------~~-----r-~----~gl~~~~~~~~~~-----l~~g~l~~~l~~~~~~lS--~G~~~r~~la~al~~~p~~ 144 (213)
T cd03279 91 ---------VE-----R-S----RGLDYDQFTRIVL-----LPQGEFDRFLARPVSTLS--GGETFLASLSLALALSEVL 144 (213)
T ss_pred ---------EE-----E-e----cCCCHHHHHHhhh-----hhhcchHHHhcCCccccC--HHHHHHHHHHHHHHhHHHh
Confidence 00 0 0 0001111111000 000011112344455677 699999999999985
Q ss_pred ------CCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 367 ------KTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 367 ------~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
+|++++|||||++||+.+...+.+.++++.+ +.|+|+|||+++.+.. ||+++++++|..
T Consensus 145 ~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 145 QNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred hhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 5789999999999999999999999988755 7899999999999988 899999998854
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-24 Score=241.55 Aligned_cols=121 Identities=35% Similarity=0.530 Sum_probs=115.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++++||||||.+|++|+++||.
T Consensus 473 l~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~ 552 (694)
T TIGR01846 473 LSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIA 552 (694)
T ss_pred cccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHh
Confidence 44699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 553 ~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 553 LCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred cCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 64 456899999999999999999999999999999999986
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0060|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.2e-21 Score=196.52 Aligned_cols=194 Identities=21% Similarity=0.279 Sum_probs=130.1
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+.+..+|+||.++.| +-+.|+||||||||+|++.+.|+.+..+|.+.--...- .+.+-|+||-
T Consensus 447 g~~lie~Ls~~V~~g-~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~--------~~~lfflPQr-------- 509 (659)
T KOG0060|consen 447 GDLLIENLSLEVPSG-QNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGG--------PKDLFFLPQR-------- 509 (659)
T ss_pred CceeeeeeeeEecCC-CeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCC--------CCceEEecCC--------
Confidence 566677777777776 78999999999999999999999999999998643211 1457899997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
|++-.+++....+|..... +...+. .....+.+. .......+++...+. .+..-+..+.|| +||
T Consensus 510 ---PYmt~GTLRdQvIYP~~~~-----~~~~~~---~~d~~i~r~Le~v~L~hl~~r~ggld-~~~~~dW~dvLS--~GE 575 (659)
T KOG0060|consen 510 ---PYMTLGTLRDQVIYPLKAE-----DMDSKS---ASDEDILRILENVQLGHLLEREGGLD-QQVDWDWMDVLS--PGE 575 (659)
T ss_pred ---CCccccchhheeeccCccc-----cccccC---CCHHHHHHHHHHhhhhhHHHHhCCCC-chhhccHHhhcC--HHH
Confidence 4333222111111110000 000000 000011111 111122222211111 123445566788 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCc
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
+||+|.||.++++|++-||||.||++|.+.|..+.+.+++ .|.|.|.|+||.+...--|.++-|+.+
T Consensus 576 qQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~--~giT~iSVgHRkSL~kfHd~~L~~~g~ 642 (659)
T KOG0060|consen 576 QQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCRE--MGITFISVGHRKSLWKFHDYVLRMDGR 642 (659)
T ss_pred HHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHH--cCCeEEEeccHHHHHhhhhEEEEecCC
Confidence 9999999999999999999999999999999999988876 479999999999999888988888753
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.89 E-value=9.7e-24 Score=211.08 Aligned_cols=121 Identities=40% Similarity=0.685 Sum_probs=113.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||+|++||++||+|+||||||||+++|+|+++ ++|+|.+||.++...+...+|++++||||+|.+|++||++|+
T Consensus 19 ~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~tv~~nl 97 (275)
T cd03289 19 VLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNL 97 (275)
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhEEEECCCcccchhhHHHHh
Confidence 3457999999999999999999999999999999998 799999999999988888999999999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
++....++++++++++.++|.+++.++|++|++.++++|.+|
T Consensus 98 ~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~L 139 (275)
T cd03289 98 DPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVL 139 (275)
T ss_pred hhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCC
Confidence 876667788999999999999999999999999999999886
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.2e-23 Score=233.51 Aligned_cols=121 Identities=30% Similarity=0.440 Sum_probs=115.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|++++|+|+||||||||+++|+|+++|++|+|.+||++++..+..++|+.++||||+|++|++|+++||.
T Consensus 331 l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 410 (569)
T PRK10789 331 LENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIA 410 (569)
T ss_pred ccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccccHHHHHh
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|+|++|.++++|.+|
T Consensus 411 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 452 (569)
T PRK10789 411 LGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVML 452 (569)
T ss_pred cCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcC
Confidence 65 456899999999999999999999999999999999886
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-22 Score=211.08 Aligned_cols=207 Identities=26% Similarity=0.361 Sum_probs=149.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++|+||+.++| |++||.|--|||+|=++++|.|..++.+|+|.++|+++.-.++. .++..|+|||.+....-++.
T Consensus 274 ~~~dvSf~vr~G-EIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l-- 350 (500)
T COG1129 274 KVRDVSFTVRAG-EILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVL-- 350 (500)
T ss_pred ceeCceeEEeCC-cEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcC--
Confidence 689999999999 99999999999999999999999999999999999998877655 78889999998744221110
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc-c-cchhHHHHHHHHHHHHHHhhccc-CCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP-F-CSNLQRFYVATSRQLKRLESVSR-SPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~lsgs~Gq~ 355 (602)
..++..|-.+....... . ..+.........+..+ .+.. .+-....-.+|| ||-+
T Consensus 351 ------------------~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~---~l~Ik~~s~~~~v~~LS--GGNQ 407 (500)
T COG1129 351 ------------------DMSIAENITLASLRRFSRRGLIDRRKERALAERYIR---RLRIKTPSPEQPIGTLS--GGNQ 407 (500)
T ss_pred ------------------CCcHHHheehHhhhhhccccccChHHHHHHHHHHHH---hcCcccCCccchhhcCC--chhh
Confidence 11111111111000000 0 0000011111112222 2221 111223334566 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
|+|.|||+|..+|++|||||||.++|.-+..+|.+.++++. +|++||+||-++.++.. ||||+||++|+++..-+.+
T Consensus 408 QKVvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 408 QKVVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred hhHHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 99999999999999999999999999999999999999875 57999999999999987 9999999999998754433
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-23 Score=230.91 Aligned_cols=120 Identities=28% Similarity=0.507 Sum_probs=114.1
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDP 562 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~ 562 (602)
+++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|+.++||||||++|++|+++|+..
T Consensus 335 ~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~ 414 (544)
T TIGR01842 335 RGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIAR 414 (544)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHhhheEEecCCcccccccHHHHHhc
Confidence 36999999999999999999999999999999999999999999999999999999999999999999999999999975
Q ss_pred CC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 563 VG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 563 ~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ..++++++++++.++++++++++|+|+||.++++|.+|
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~L 455 (544)
T TIGR01842 415 FGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATL 455 (544)
T ss_pred cCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCC
Confidence 43 47899999999999999999999999999999999886
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-23 Score=185.15 Aligned_cols=195 Identities=18% Similarity=0.304 Sum_probs=144.7
Q ss_pred EEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEe
Q psy3001 205 KVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIF 284 (602)
Q Consensus 205 s~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~ 284 (602)
|-....| |++-+|||||||||||+..++|+. |.+|+|.++|.++..++..++.++=+|+.|+..--|.+ |++-
T Consensus 19 S~qv~aG-e~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~m----pV~~- 91 (248)
T COG4138 19 SGEVRAG-EILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM----PVWH- 91 (248)
T ss_pred ccccccc-eEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHHhhccCCcchh----hhhh-
Confidence 3334445 999999999999999999999987 57999999999999999999999999999863321110 1110
Q ss_pred eecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
|+. .....+......+...+ .+...+...+.-..+| |||-|||-+|...
T Consensus 92 ----------YL~----------------L~qP~~~~a~~i~~i~~---~L~l~DKL~Rs~~qLS--GGEWQRVRLAav~ 140 (248)
T COG4138 92 ----------YLT----------------LHQPDKTRTELLNDVAG---ALALDDKLGRSTNQLS--GGEWQRVRLAAVV 140 (248)
T ss_pred ----------hhh----------------hcCchHHHHHHHHHHHh---hhcccchhhhhhhhcC--cccceeeEEeEEE
Confidence 000 00000111111111111 3444555666666778 5999999999988
Q ss_pred hh-------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 365 LR-------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 365 ~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
++ ..++|++|||-++||...+..+...+..+. .|.+||+.+||+.--.+ ||+++.+..|++...|..+|++
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVl 220 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVL 220 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhc
Confidence 76 235999999999999999888888887764 58999999999987554 9999999999999999988887
Q ss_pred hc
Q psy3001 436 KN 437 (602)
Q Consensus 436 ~~ 437 (602)
..
T Consensus 221 t~ 222 (248)
T COG4138 221 TP 222 (248)
T ss_pred Ch
Confidence 54
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.5e-22 Score=230.17 Aligned_cols=173 Identities=21% Similarity=0.243 Sum_probs=121.6
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~ 407 (602)
++.+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.....+.+.|+++.+ |.|||+|+|+
T Consensus 473 L~~vGL~~l~l~r~~~~LS--gGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 473 LVDVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred hhccccCCCCCCCchhhCC--HHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 334444433 344555677 69999999999999997 99999999999999999999999998754 7999999999
Q ss_pred ccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhh-hhHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVG-NLITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||+|++| ++|+++..|+++++....................+....+.. ..+.+... ..-
T Consensus 551 ~~~i~~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~L~v~~l-------~~~ 623 (943)
T PRK00349 551 EDTIRAADYIVDIGPGAGVHGGEVVASGTPEEIMKNPNSLTGQYLSGKKKIEVPKERRKGNGKFLKLKGA-------REN 623 (943)
T ss_pred HHHHHhCCEEEEeccccCCCCCEEeeccCHHHHhcChhheeehhhcccccccccccccCCCcceEEecCC-------ccC
Confidence 9998789999999 999999999999886542211100100000000000000000 00111100 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
.+++++|+|++||++||+|.||||||||++-+.
T Consensus 624 ~L~~isl~Ip~GeivgVtGvsGSGKSTLl~~~l 656 (943)
T PRK00349 624 NLKNVDVEIPLGKFTCVTGVSGSGKSTLINETL 656 (943)
T ss_pred CcCceEEEEeCCCEEEEEcCCCCCHHHHHHHHH
Confidence 245799999999999999999999999998764
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-22 Score=202.52 Aligned_cols=186 Identities=17% Similarity=0.215 Sum_probs=117.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCe-ecCCCC--hHHHhhccceecccchhhhhhc--cCCceeEee-
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGV-DIRTLG--LHTLRSRLTIIPQVLATIFVIC--YSTPVFIFV- 285 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~-~~~~~~--~~~~~~~i~~v~Q~~~~~~~~~--~~~~~~~~~- 285 (602)
.+++||||||||||||+++|.+++.+. .|++...+. ++.... ....+..+.+++|++....... ...|.+...
T Consensus 26 ~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~ltV~r 105 (251)
T cd03273 26 QFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEITVTR 105 (251)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceEEEEE
Confidence 689999999999999999999999886 568888776 332111 1122458889999753211000 000111100
Q ss_pred ecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC--------------------CcccccC
Q psy3001 286 IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS--------------------PIYSHFG 345 (602)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--------------------~~~~~~~ 345 (602)
.+..+. ......+ ...... .+..+.++.++.. .......
T Consensus 106 ~I~~~~-----~~~~~in-------------~~~~~~---~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~ 164 (251)
T cd03273 106 QIVLGG-----TNKYLIN-------------GHRAQQ---QRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESL 164 (251)
T ss_pred EEEcCC-----ceEEEEC-------------CEEeeH---HHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccc
Confidence 000000 0000000 000000 1111122222221 1123344
Q ss_pred CcCCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
..+| +|||||++|||||+ .+|++++|||||++||+.+..++.+.+++..++.|+|+|||+.+.+..||+++-+.
T Consensus 165 ~~lS--~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~~~~~d~v~~~~ 242 (251)
T cd03273 165 TELS--GGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGMFNNANVLFRTR 242 (251)
T ss_pred cccC--HHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 5666 69999999999998 57899999999999999999999999998877889999999977777799998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.6e-22 Score=200.45 Aligned_cols=77 Identities=18% Similarity=0.238 Sum_probs=66.4
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEE
Q psy3001 343 HFGETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~ 418 (602)
.....+| +|||||++||||++. +|++++|||||++||+.+...+.+.++++.++.++|+++|+.+....||+++
T Consensus 154 ~~~~~lS--~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~~~~~~d~i~ 231 (243)
T cd03272 154 QEMQQLS--GGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPELLEVADKFY 231 (243)
T ss_pred ccccccC--HHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEE
Confidence 3455666 699999999999973 6899999999999999999999999988866788999999977655599999
Q ss_pred EEe
Q psy3001 419 VLD 421 (602)
Q Consensus 419 ~l~ 421 (602)
+|.
T Consensus 232 ~l~ 234 (243)
T cd03272 232 GVK 234 (243)
T ss_pred EEE
Confidence 986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=9.2e-23 Score=226.71 Aligned_cols=121 Identities=32% Similarity=0.470 Sum_probs=114.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++.++.+.+|+.++||||||++|++|+++|+.
T Consensus 351 l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~ 430 (585)
T TIGR01192 351 VFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIR 430 (585)
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHh
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. +..++++++++++.+++++++.++|+|++|.++++|.+|
T Consensus 431 ~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~L 472 (585)
T TIGR01192 431 LGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRL 472 (585)
T ss_pred cCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCC
Confidence 65 346899999999999999999999999999999999876
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-23 Score=207.33 Aligned_cols=118 Identities=35% Similarity=0.580 Sum_probs=113.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPV 563 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~ 563 (602)
+++|++..|+++||||++|+||||++++|+|+|++++|.|.+||+|++....+.+|+.||+||||..||++|+..|+.+.
T Consensus 281 ~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~yg 360 (497)
T COG5265 281 GISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYG 360 (497)
T ss_pred CccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhcc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred -CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 564 -GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 564 -~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
+..+++|+++|++.+.+++|++.+|.||+|.|||+|-.
T Consensus 361 r~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 361 RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred CccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 45799999999999999999999999999999999854
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=230.64 Aligned_cols=171 Identities=22% Similarity=0.247 Sum_probs=119.9
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 407 (602)
+..+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|||+|+|+
T Consensus 471 L~~vgL~~l~l~r~~~tLS--GGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd 548 (924)
T TIGR00630 471 LIDVGLDYLTLSRAAGTLS--GGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHD 548 (924)
T ss_pred HhhccccccccCCCcCcCC--HHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECC
Confidence 334444433 345566777 69999999999999986 8999999999999999999999998875 47899999999
Q ss_pred ccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh-hHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGN-LITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||+|++| ++|+|+..|+++++....................+....+... .+.+... ..-
T Consensus 549 ~~~i~~aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~~~~lt~~~l~~~~~~~~~~~~~~~~~~~l~l~~~-------~~~ 621 (924)
T TIGR00630 549 EETIRAADYVIDIGPGAGIHGGEVVASGTPEEILANPDSLTGQYLSGKKKIEVPKERRPGNGKFLTLKGA-------REN 621 (924)
T ss_pred HHHHhhCCEEEEecccccCCCCEEeeccCHHHHhcCchheeeecccccccccccccccCCCcceEEEEeC-------ccC
Confidence 9998889999999 8999999999988754322111000000000000000000000 0000000 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLA 511 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~ 511 (602)
.+++++|+|+.|++++|+|+||||||||++-
T Consensus 622 ~Lk~vsl~Ip~Geiv~VtGvsGSGKSTLl~~ 652 (924)
T TIGR00630 622 NLKNITVSIPLGLFTCITGVSGSGKSTLIND 652 (924)
T ss_pred CcCceEEEEeCCCEEEEECCCCCCHHHHHHH
Confidence 3567999999999999999999999999983
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-22 Score=181.76 Aligned_cols=223 Identities=23% Similarity=0.289 Sum_probs=163.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC----CCceEEECCeecCCCChHHHhh----ccceecccch
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP----ADGTIIIDGVDIRTLGLHTLRS----RLTIIPQVLA 270 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~----~~G~I~i~g~~~~~~~~~~~~~----~i~~v~Q~~~ 270 (602)
-.++++|.+..+| |+-|+||+||||||-+.|+|+|..+- +.-...+++.++-.+++...|+ .|++++|+|.
T Consensus 21 K~VD~v~ltlnEG-Ei~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~ 99 (330)
T COG4170 21 KAVDRVSMTLNEG-EIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQ 99 (330)
T ss_pred Eeeeeeeeeeccc-eeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCch
Confidence 3689999999998 99999999999999999999998763 4566778899999999988775 5677888753
Q ss_pred hhhhhccCCceeEeeecccceeeeccccceeecccccccccc-cc-cchhHHHHHHHHHHHHHHhhcccC---CcccccC
Q psy3001 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PF-CSNLQRFYVATSRQLKRLESVSRS---PIYSHFG 345 (602)
Q Consensus 271 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~ 345 (602)
.-. ..+-.....+-.++-. .+ ....+.|-.+..++.+.+-.++.. +....++
T Consensus 100 sCL-----------------------DPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP 156 (330)
T COG4170 100 SCL-----------------------DPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYP 156 (330)
T ss_pred hhc-----------------------ChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCc
Confidence 211 0000000000000000 00 111222222333444444344332 2344456
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeC
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDK 422 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~ 422 (602)
..+.. ||-|+|.||.|++.+|++||-||||+++|+.+...++..|.+..+ +.|+++++||+..+.+ ||+|-||.-
T Consensus 157 ~ElTe--GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYC 234 (330)
T COG4170 157 YELTE--GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYC 234 (330)
T ss_pred chhcc--CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEe
Confidence 66663 999999999999999999999999999999999999999987654 6899999999999998 999999999
Q ss_pred ceEEeecChhHHhhcchhHHHHHHH
Q psy3001 423 GLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 423 G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+-++.+..++++..+...|....-
T Consensus 235 GQ~~ESa~~e~l~~~PhHPYTqALi 259 (330)
T COG4170 235 GQTVESAPSEELVTMPHHPYTQALI 259 (330)
T ss_pred cccccccchhHHhcCCCCchHHHHH
Confidence 9999999999999887777765543
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=7.4e-22 Score=233.27 Aligned_cols=169 Identities=21% Similarity=0.212 Sum_probs=118.2
Q ss_pred HhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec
Q psy3001 332 LESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR 407 (602)
Q Consensus 332 l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~ 407 (602)
+..+++..+ ......+|| |||+|||+|||||..+| ++|||||||++||+.+.+.+.+.|+++. +|.|||+|+||
T Consensus 460 L~~vGL~~L~ldR~~~tLS--GGE~QRV~LAraL~~~p~g~lLILDEPTagLD~~~~~~L~~lL~~L~~~G~TVIvVeHd 537 (1809)
T PRK00635 460 LIDLGLPYLTPERALATLS--GGEQERTALAKHLGAELIGITYILDEPSIGLHPQDTHKLINVIKKLRDQGNTVLLVEHD 537 (1809)
T ss_pred HHhccccCCCCCCchhhCC--HHHHHHHHHHHHHhcCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCc
Confidence 334444433 344455677 69999999999999999 8999999999999999999999999875 47999999999
Q ss_pred ccccccCCeEEEEe------CceEEeecChhHHhhcchhHHHHHHHhhhhhHH-HHHHHhhhhhHHHHHHHHHHHhcccc
Q psy3001 408 LNTIIDSDRVLVLD------KGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWL-AVRLETVGNLITFSAALLAVLSKETL 480 (602)
Q Consensus 408 l~~i~~~d~i~~l~------~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (602)
++.+..||++++|. +|+++..|++++++.........+.... .... +.........+.+... ..-
T Consensus 538 ~~vi~~aDrVi~L~pGag~~gG~Iv~~G~~~eil~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~L~l~~~-------~~~ 609 (1809)
T PRK00635 538 EQMISLADRIIDIGPGAGIFGGEVLFNGSPREFLAKSDSLTAKYLRQE-LTIPIPEKRTNSLGTLTLSKA-------TKH 609 (1809)
T ss_pred HHHHHhCCEEEEEcCCcccCCCEEEEecCHHHHhhChHHHHHHHhcCc-ccccCcccccCCCCeEEEecc-------ccC
Confidence 99665599999996 7899999998887654221111111100 0000 0000000000011100 011
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHH
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTL 510 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~ 510 (602)
.+++++|+|+.||+++|+|+||||||||++
T Consensus 610 ~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~ 639 (1809)
T PRK00635 610 NLKDLTISLPLGRLTVVTGVSGSGKSSLIN 639 (1809)
T ss_pred CccceEEEEcCCcEEEEEcCCCCCHHHHHH
Confidence 356799999999999999999999999999
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.3e-22 Score=189.81 Aligned_cols=161 Identities=21% Similarity=0.254 Sum_probs=109.6
Q ss_pred ceEEEEeccCCChhHHHHHHh----cccCCCCceEEECCeecCCCChHHHhhccceecccc-hhhhhhccCCceeEeeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF----RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL-ATIFVICYSTPVFIFVIV 287 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~----g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~-~~~~~~~~~~~~~~~~~~ 287 (602)
.+++|+|+||||||||+++|. |..+|..|.+..+...+.. ...+..+++++|++ ...+
T Consensus 23 g~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~---~~~~~~v~~~f~~~~~~~~-------------- 85 (204)
T cd03240 23 PLTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE---GEVRAQVKLAFENANGKKY-------------- 85 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC---CCCcEEEEEEEEeCCCCEE--------------
Confidence 389999999999999999994 8888888876522211111 22345677777763 1110
Q ss_pred ccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH------HHHH
Q psy3001 288 PVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL------ICLA 361 (602)
Q Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr------l~lA 361 (602)
.....-++.+.+.. ..+ .+.... +......+| +||+|| +++|
T Consensus 86 -----------~v~r~~~~~~~~~~----~~~------~~~~~~---------~~~~~~~LS--~G~~~~~~la~rlala 133 (204)
T cd03240 86 -----------TITRSLAILENVIF----CHQ------GESNWP---------LLDMRGRCS--GGEKVLASLIIRLALA 133 (204)
T ss_pred -----------EEEEEhhHhhceee----ech------HHHHHH---------HhcCccccC--ccHHHHHHHHHHHHHH
Confidence 00000011111000 000 000111 123344566 599996 7899
Q ss_pred HHHhhCCCeEEEecccccCChhHHH-HHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeC
Q psy3001 362 RALLRKTKILILDEATAAIDLETDD-LIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 362 ral~~~p~iliLDEpts~LD~~~~~-~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
||++.+|++++|||||++||+.+.. .+.+.+++..+ +.|+|++||+++.+..||++++|++
T Consensus 134 ~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 134 ETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred HHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999999999999999999 99999988754 6899999999998877999999964
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >KOG0927|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-22 Score=202.48 Aligned_cols=186 Identities=22% Similarity=0.300 Sum_probs=124.5
Q ss_pred CcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccc
Q psy3001 197 GEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT 263 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~ 263 (602)
..+.++||+|.|.++ .+.+|+|||||+|||||+|++.|.+.|..|.|.-.-.. +++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cch
Confidence 357899999998754 15699999999999999999999999999998654321 112
Q ss_pred eecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-ccc
Q psy3001 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-IYS 342 (602)
Q Consensus 264 ~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~ 342 (602)
+..|+...+. -.....-+.+ .+.... ..........+. ..++.. ...
T Consensus 457 ~y~Qh~~e~l---------------------------dl~~s~le~~-~~~~~~-~~~~e~~r~ilg---rfgLtgd~q~ 504 (614)
T KOG0927|consen 457 RYNQHLAEQL---------------------------DLDKSSLEFM-MPKFPD-EKELEEMRSILG---RFGLTGDAQV 504 (614)
T ss_pred hhhhhhHhhc---------------------------CcchhHHHHH-HHhccc-cchHHHHHHHHH---HhCCCccccc
Confidence 2222210000 0000000000 000000 000111112222 222221 111
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
..-.+|| .|||.||+.||+.+++|.+|+|||||+|||.++...+.++|..+. .+||+||||...+.+ +++|++.+
T Consensus 505 ~p~~~LS--~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~ 580 (614)
T KOG0927|consen 505 VPMSQLS--DGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCE 580 (614)
T ss_pred cchhhcc--cccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhc
Confidence 2223566 699999999999999999999999999999999999999998764 489999999999999 99999999
Q ss_pred CceEEeec
Q psy3001 422 KGLVVEFD 429 (602)
Q Consensus 422 ~G~i~~~g 429 (602)
+|.+..+.
T Consensus 581 ~~~~~~~~ 588 (614)
T KOG0927|consen 581 NGTVTKWD 588 (614)
T ss_pred cCceeecC
Confidence 99987553
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.7e-20 Score=213.36 Aligned_cols=109 Identities=26% Similarity=0.348 Sum_probs=92.1
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
++.++.+++.. ..+....+|| |||+||++|||+|+++| +++||||||++||+.+...+.+.++++. +|.|||+
T Consensus 811 l~~L~~vgL~~l~l~~~~~tLS--gGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIi 888 (943)
T PRK00349 811 LQTLVDVGLGYIKLGQPATTLS--GGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVV 888 (943)
T ss_pred HHHHHHCCCCcccccCCcccCC--HHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34444555543 2445556677 69999999999999999 9999999999999999999999998874 4789999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHHhhcch
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKA 439 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~ 439 (602)
|+|+++.+..||+|++| ++|+++..|+++++...+.
T Consensus 889 itH~~~~i~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 889 IEHNLDVIKTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred EecCHHHHHhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 99999999779999999 7999999999999876543
|
|
| >KOG0062|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-20 Score=192.76 Aligned_cols=185 Identities=17% Similarity=0.209 Sum_probs=135.6
Q ss_pred CCcEEEeeeEEEEecCC--------------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhc
Q psy3001 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~--------------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~ 261 (602)
...+++.+|+|.|.++. +.+++||+||+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 35789999999998862 34899999999999999999999999999998876 567
Q ss_pred cceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCC-c
Q psy3001 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-I 340 (602)
Q Consensus 262 i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~ 340 (602)
+++..|.-..++-.... .-+-.+.+ .... ...+....+..++.+. +
T Consensus 429 i~~f~Qhhvd~l~~~v~-----------------------~vd~~~~~-----~pG~-----~~ee~r~hl~~~Gl~g~l 475 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVN-----------------------AVDFMEKS-----FPGK-----TEEEIRRHLGSFGLSGEL 475 (582)
T ss_pred ecchhHhhhhHHHHHhH-----------------------HHHHHHHh-----CCCC-----CHHHHHHHHHhcCCCchh
Confidence 88887753322100000 00000000 0000 0111222333555543 3
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEE
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
..+.-.+|| ||||-||++|.+...+|.+|||||||++||.++-..+.++|+.+. ..||+|||+.+++.. |+.+++
T Consensus 476 a~~si~~LS--GGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wv 551 (582)
T KOG0062|consen 476 ALQSIASLS--GGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWV 551 (582)
T ss_pred hhccccccC--CcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEE
Confidence 333334566 699999999999999999999999999999999999999998764 479999999999998 999999
Q ss_pred EeCceEEee
Q psy3001 420 LDKGLVVEF 428 (602)
Q Consensus 420 l~~G~i~~~ 428 (602)
.++|++...
T Consensus 552 ve~g~vt~i 560 (582)
T KOG0062|consen 552 VEDGKVTPI 560 (582)
T ss_pred EcCCcEEee
Confidence 999999753
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.8e-21 Score=191.23 Aligned_cols=160 Identities=24% Similarity=0.412 Sum_probs=112.6
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+|+++++||||-||||++++|+|.++|++|. ..+ -.++|=||-....
T Consensus 367 gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQyI~~~------------------- 413 (591)
T COG1245 367 GEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQYISPD------------------- 413 (591)
T ss_pred ceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecceeecCC-------------------
Confidence 3899999999999999999999999999997 111 1456666631110
Q ss_pred eeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCe
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKI 370 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~i 370 (602)
++.++.+.+...... ....++. .+....+.+.+++...-..|| |||.||||||.||.+++++
T Consensus 414 ----------~~gtV~~~l~~~~~~~~~~s~~~-----~ei~~pl~l~~i~e~~v~~LS--GGELQRvaIaa~L~reADl 476 (591)
T COG1245 414 ----------YDGTVEDLLRSAIRSAFGSSYFK-----TEIVKPLNLEDLLERPVDELS--GGELQRVAIAAALSREADL 476 (591)
T ss_pred ----------CCCcHHHHHHHhhhhhcccchhH-----HhhcCccchHHHHhcccccCC--chhHHHHHHHHHhccccCE
Confidence 111111110000000 0000010 111123333444555556777 5999999999999999999
Q ss_pred EEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 371 LILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 371 liLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
++||||+++||.+.+..+.+.+++... ++|.++|.||+..+.. +||++|.+
T Consensus 477 YllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 477 YLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred EEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999998643 5899999999999998 99999986
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-21 Score=187.75 Aligned_cols=75 Identities=23% Similarity=0.346 Sum_probs=65.8
Q ss_pred CcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 346 ETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
..+| +|||||++||||++. +|++++|||||++||+.+..++.+.++++.++.|+|++||+.+....||++++|.
T Consensus 126 ~~lS--~G~~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~ 203 (212)
T cd03274 126 SNLS--GGEKTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIY 203 (212)
T ss_pred hhcC--HHHHHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEE
Confidence 3455 699999999999974 5799999999999999999999999999877789999999976655699999996
Q ss_pred C
Q psy3001 422 K 422 (602)
Q Consensus 422 ~ 422 (602)
.
T Consensus 204 ~ 204 (212)
T cd03274 204 K 204 (212)
T ss_pred e
Confidence 3
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.1e-20 Score=185.21 Aligned_cols=75 Identities=19% Similarity=0.295 Sum_probs=66.6
Q ss_pred CcCCCChhhHHHHHHHHHHhhC----CCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEE
Q psy3001 346 ETVTGNVGQRQLICLARALLRK----TKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~----p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l 420 (602)
..+| +|||||++||||++.+ |++++|||||++||+.+...+.+.+++..+ +.++|+|||+.+.+..||++++|
T Consensus 154 ~~LS--~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~~~ 231 (247)
T cd03275 154 DNLS--GGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALVGV 231 (247)
T ss_pred HHcC--HHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEEEE
Confidence 3455 6999999999999865 899999999999999999999999998754 78999999998887779999998
Q ss_pred eC
Q psy3001 421 DK 422 (602)
Q Consensus 421 ~~ 422 (602)
..
T Consensus 232 ~~ 233 (247)
T cd03275 232 YR 233 (247)
T ss_pred Ee
Confidence 63
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.2e-20 Score=184.12 Aligned_cols=121 Identities=61% Similarity=0.986 Sum_probs=109.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 99 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLD 99 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEEEECCCCccccchHHHHhC
Confidence 45799999999999999999999999999999999999999999999998877778888999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+......+++.++++.+++.++..++|.++++.+...+.+|
T Consensus 100 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~L 140 (221)
T cd03244 100 PFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENL 140 (221)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcC
Confidence 66555677899999999999999999999999887766554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.6e-21 Score=209.85 Aligned_cols=111 Identities=22% Similarity=0.271 Sum_probs=104.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.+||++++..+..++|+.++||+|||++|++|+++|+.
T Consensus 358 l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~ 437 (555)
T TIGR01194 358 LGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEG 437 (555)
T ss_pred eccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccc
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999999999963
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCcc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~ 594 (602)
+..++++++++++.++++++++++|+||||.
T Consensus 438 --~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~ 468 (555)
T TIGR01194 438 --EHASLDNAQQYLQRLEIADKVKIEDGGFSTT 468 (555)
T ss_pred --cchhHHHHHHHHHHcCCchhhcccccccCCc
Confidence 3467889999999999999999999999986
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-20 Score=186.92 Aligned_cols=121 Identities=54% Similarity=0.900 Sum_probs=109.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+||+|.+|++|+++|+.
T Consensus 37 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~tv~~nl~ 116 (257)
T cd03288 37 LKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLD 116 (257)
T ss_pred eeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhhhEEEECCCCcccccHHHHhcC
Confidence 45799999999999999999999999999999999999999999999998888888889999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+......++++++++.+++.++++.+|.++++.++..+.+|
T Consensus 117 ~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~L 157 (257)
T cd03288 117 PECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENF 157 (257)
T ss_pred cCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcC
Confidence 65444566788999999999999999999999888776654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.3e-21 Score=170.32 Aligned_cols=121 Identities=24% Similarity=0.307 Sum_probs=99.9
Q ss_pred HHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEe
Q psy3001 469 AALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTII 545 (602)
Q Consensus 469 ~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V 545 (602)
.++..|..+ ...+.++||++.+||.+-++||+|||||||+|+|++..+|++|+|+++|+|+.+++.++ +|++||+|
T Consensus 6 ~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvV 84 (223)
T COG2884 6 NVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQIGVV 84 (223)
T ss_pred hhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhheeeeE
Confidence 344444433 44566899999999999999999999999999999999999999999999999988665 69999999
Q ss_pred cCCcccccc-chhcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 546 PQDPVLFSG-TLRLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 546 ~Qdp~lf~~-Tv~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+||.-|+.+ ||.+|..+. +. .-.+++.++|+++||.+....+|..
T Consensus 85 FQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~ 137 (223)
T COG2884 85 FQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQ 137 (223)
T ss_pred eeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccc
Confidence 999988765 999998632 12 2346799999999999877766653
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.8e-20 Score=209.34 Aligned_cols=104 Identities=25% Similarity=0.340 Sum_probs=87.0
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhh---CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLR---KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~---~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
++.+..+++.. .......++| +||+||++|||+|++ +|+++||||||++||+.....+.+.++++. ++.|+|+
T Consensus 809 l~~L~~~gL~~l~l~~~~~tLS--gGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIv 886 (924)
T TIGR00630 809 LQTLCDVGLGYIKLGQPATTLS--GGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVV 886 (924)
T ss_pred HHHHHHcCCCchhhcCccccCC--HHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34444445433 2345556677 699999999999997 599999999999999999999999998875 4789999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHH
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVL 434 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l 434 (602)
|+|+++.+..||++++| ++|+++..|+++++
T Consensus 887 i~H~~~~i~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 887 IEHNLDVIKTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred EeCCHHHHHhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 99999999779999999 79999999988764
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.1e-20 Score=177.37 Aligned_cols=116 Identities=30% Similarity=0.424 Sum_probs=100.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||+|..||.+.++||+||||||++|+|.|+++|++|+|+++|++++.++..++|++||||-|..-||+. ||.+||
T Consensus 17 v~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYviQqigLFPh~Tv~eNI 96 (309)
T COG1125 17 VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENI 96 (309)
T ss_pred eeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhhhhhcccCCCccHHHHH
Confidence 4579999999999999999999999999999999999999999999999999999999999999999999987 999999
Q ss_pred CCC---CCCc----HHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 561 DPV---GESS----DEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 561 ~~~---~~~~----~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
... .+++ ++++.+.++++||+. ...-++||+++++|-
T Consensus 97 a~VP~L~~w~k~~i~~r~~ELl~lvgL~p--~~~~~RyP~eLSGGQ 140 (309)
T COG1125 97 ATVPKLLGWDKERIKKRADELLDLVGLDP--SEYADRYPHELSGGQ 140 (309)
T ss_pred HhhhhhcCCCHHHHHHHHHHHHHHhCCCH--HHHhhcCchhcCcch
Confidence 632 2233 456889999999975 234457888887664
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.9e-20 Score=188.25 Aligned_cols=109 Identities=25% Similarity=0.339 Sum_probs=96.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++..||.++++|||||||||||++|+|+.+|++|+|.|||++++..++.+ |+|++|||++.||+. ||++|
T Consensus 18 ~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iamVFQ~yALyPhmtV~~N 95 (338)
T COG3839 18 VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAMVFQNYALYPHMTVYEN 95 (338)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEEEeCCccccCCCcHHHH
Confidence 455799999999999999999999999999999999999999999999999998874 689999999999988 99999
Q ss_pred cCCCCC-------CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPVGE-------SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~~~-------~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+.+.-+ .-++++.++++.+++.++.++.|..|
T Consensus 96 iaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~L 134 (338)
T COG3839 96 IAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQL 134 (338)
T ss_pred hhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccC
Confidence 974322 23577999999999999888776543
|
|
| >KOG0064|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.5e-17 Score=170.06 Aligned_cols=186 Identities=21% Similarity=0.298 Sum_probs=122.2
Q ss_pred CCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 196 KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 196 ~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
.+.+.+.+++|.+.+| ..+.|+||||||||+|.++|.|++|...|...+-- +.+|.|+||-
T Consensus 493 ~~~vvv~~Ltf~i~~G-~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQR------- 553 (728)
T KOG0064|consen 493 AGDVLVPKLTFQIEPG-MHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQR------- 553 (728)
T ss_pred CcceeecceeEEecCC-ceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCC-------
Confidence 3567788888998887 88999999999999999999999999888876532 3458999997
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHH--HHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRF--YVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
|++...+.- ..+.+.++.++...-... .++... .......++ ..+.-..+....+.|| |
T Consensus 554 ----PYms~gtlR---------DQIIYPdS~e~~~~kg~~d~dL~~iL~~v~L~~i~q---r~~g~da~~dWkd~Ls--g 615 (728)
T KOG0064|consen 554 ----PYMSGGTLR---------DQIIYPDSSEQMKRKGYTDQDLEAILDIVHLEHILQ---REGGWDAVRDWKDVLS--G 615 (728)
T ss_pred ----CccCcCccc---------ceeecCCcHHHHHhcCCCHHHHHHHHHHhhHHHHHH---hccChhhhccHHhhcc--c
Confidence 433311111 111111111111000000 000000 001111111 1111112344455677 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|+|||+++||.++++|+.-+|||.||+.-++.+..+.+..+. .|.+.+.||||++.+..-..++..
T Consensus 616 GekQR~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~--~gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 616 GEKQRMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKD--AGISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hHHHHHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHh--cCceEEEeecCccHHHHHHHHHhc
Confidence 999999999999999999999999999999999999888766 478999999999988654444333
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.2e-20 Score=175.58 Aligned_cols=82 Identities=16% Similarity=0.166 Sum_probs=70.5
Q ss_pred ccccCCcCCCChhhHHHHHHHHHH----hhCCCeEEEecccccCChhHHHHHHHHHHHhc-c---ccEEEEeeecccccc
Q psy3001 341 YSHFGETVTGNVGQRQLICLARAL----LRKTKILILDEATAAIDLETDDLIQSTIRSEF-A---HCTVLTIAHRLNTII 412 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~---~~tvi~itH~l~~i~ 412 (602)
......++| +|||||++||+|+ +.+|+++||||||++||+.+...+.+.|++.. + ++|+++++|+++.+.
T Consensus 103 ~~~~~~~lS--~G~k~r~~ia~al~~~~~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~ 180 (198)
T cd03276 103 AVRDVKTLS--GGERSFSTVCLLLSLWEVMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLA 180 (198)
T ss_pred cCCcccccC--hhHHHHHHHHHHHHHhcccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccc
Confidence 344555677 6999999999999 58999999999999999999999999888753 2 368999999999999
Q ss_pred cCCeEEEEeCce
Q psy3001 413 DSDRVLVLDKGL 424 (602)
Q Consensus 413 ~~d~i~~l~~G~ 424 (602)
.+|+|.+|+.++
T Consensus 181 ~~d~v~~~~~~~ 192 (198)
T cd03276 181 SSDDVKVFRMKD 192 (198)
T ss_pred cccceeEEEecC
Confidence 999999998643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.3e-20 Score=171.79 Aligned_cols=113 Identities=28% Similarity=0.359 Sum_probs=93.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-CChhhhhccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
++++|+++.+||+++|+||+|||||||++||.|+.+|++|+|.+||.++.. .....+|+++|+|+|+..||+. ||-+|
T Consensus 18 Lkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleN 97 (240)
T COG1126 18 LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLEN 97 (240)
T ss_pred ecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHH
Confidence 457999999999999999999999999999999999999999999987743 3677899999999999999987 99999
Q ss_pred cCCC----CC----CcHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 560 LDPV----GE----SSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 560 l~~~----~~----~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
+... .+ ...+...+.|+++||.+..+ .||..+++|
T Consensus 98 v~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~----~yP~qLSGG 140 (240)
T COG1126 98 VTLAPVKVKKLSKAEAREKALELLEKVGLADKAD----AYPAQLSGG 140 (240)
T ss_pred HHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhh----hCccccCcH
Confidence 8522 11 12344778899999988655 466666554
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.4e-18 Score=195.91 Aligned_cols=207 Identities=21% Similarity=0.268 Sum_probs=141.8
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeecCCCChHHHhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
..++|++.-.++| +.+.+.|+.|||||||+++++|-.+- ..|+|.+||.+.++..+ ++.++|.+|.
T Consensus 129 ~il~~~sg~~~pg-~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~------- 197 (1391)
T KOG0065|consen 129 QILKDISGIIKPG-EMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQ------- 197 (1391)
T ss_pred eeecCcceeEcCC-ceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccc-------
Confidence 4789999999998 99999999999999999999998864 35799999999988776 7889999996
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHH-HH--HHHHHHHHHhhcccC----Ccccc-cCCc
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRF-YV--ATSRQLKRLESVSRS----PIYSH-FGET 347 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~~~l~~~~~~----~~~~~-~~~~ 347 (602)
.+.+..... ..++-+...-+. ......+..+. +. ..+..++ .++++ .+++. ....
T Consensus 198 ----DvH~p~lTV--------reTldFa~rck~--~~~r~~~~~R~e~~~~~~d~~lk---ilGL~~~~dT~VGnd~~RG 260 (1391)
T KOG0065|consen 198 ----DVHFPELTV--------RETLDFAARCKG--PGSRYDEVSRREKLAAMTDYLLK---ILGLDHCADTLVGNDMVRG 260 (1391)
T ss_pred ----ccccceeEE--------eehhhHHHhccC--CccccccccHHHHHHHHHHHHHH---HhCchhhccceeccccccc
Confidence 222210000 001000000000 00001111111 11 1122222 23332 22222 2233
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccc-ccc-CCeEEEEeCc
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT-IID-SDRVLVLDKG 423 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~-i~~-~d~i~~l~~G 423 (602)
.| ||||.||.+|-+++.+++++.+||+|.+||..|.-++.+.++...+ +.|.++.=|..+. +-+ .|.|++|.+|
T Consensus 261 vS--GGerKRvsi~E~~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG 338 (1391)
T KOG0065|consen 261 VS--GGERKRVSIGEMLVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEG 338 (1391)
T ss_pred cc--CcccceeeeeeeeecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeecc
Confidence 44 6999999999999999999999999999999999999999998754 5677777676543 444 8999999999
Q ss_pred eEEeecChhHHh
Q psy3001 424 LVVEFDSPSVLM 435 (602)
Q Consensus 424 ~i~~~g~~~~l~ 435 (602)
+++-+|+.++.+
T Consensus 339 ~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 339 YQIYQGPRDEVL 350 (1391)
T ss_pred ceEEeccHHHHH
Confidence 999998866654
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.5e-20 Score=187.35 Aligned_cols=113 Identities=26% Similarity=0.375 Sum_probs=96.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
..+.++||+|++||.++++|||||||||||++|+|+..|++|+|.++|+++...|++ +|.|++|+|+.-||+. ||++
T Consensus 19 ~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ig~VFQ~YALFPHltV~~ 96 (352)
T COG3842 19 TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPIGMVFQSYALFPHMTVEE 96 (352)
T ss_pred eEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcccceeecCcccCCCCcHHH
Confidence 345679999999999999999999999999999999999999999999999998887 6789999999999987 9999
Q ss_pred ccCCCCC----C----cHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 559 NLDPVGE----S----SDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 559 nl~~~~~----~----~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
|+.++-+ . .++++.++|+.++|.++.. ++++++++|
T Consensus 97 NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~----R~p~qLSGG 140 (352)
T COG3842 97 NVAFGLKVRKKLKKAEIKARVEEALELVGLEGFAD----RKPHQLSGG 140 (352)
T ss_pred HhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhh----hChhhhChH
Confidence 9864322 2 2347999999999998665 455566554
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.9e-20 Score=176.95 Aligned_cols=108 Identities=30% Similarity=0.470 Sum_probs=91.2
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~ 558 (602)
..++++||++++||+++|+||||||||||+|+|+|+++|.+|+|.+||+++.+++..++.++++||||.+.. |.-||++
T Consensus 16 ~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~tV~d 95 (258)
T COG1120 16 PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYE 95 (258)
T ss_pred eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEEeccCCCCCCCcEEee
Confidence 345679999999999999999999999999999999999999999999999999999999999999999744 5558876
Q ss_pred ccC----C----CCCC---cHHHHHHHHHHcCCCcccccc
Q psy3001 559 NLD----P----VGES---SDEAIWKALELAHLNTFVSNL 587 (602)
Q Consensus 559 nl~----~----~~~~---~~~~i~~al~~~~l~~~~~~~ 587 (602)
-.. | .... +.+.+.++|+.+++.++.++.
T Consensus 96 ~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~ 135 (258)
T COG1120 96 LVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP 135 (258)
T ss_pred hHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc
Confidence 542 1 1212 223588999999999887754
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-19 Score=179.00 Aligned_cols=121 Identities=33% Similarity=0.503 Sum_probs=104.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||++.+|..||++|+.
T Consensus 18 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 97 (237)
T cd03252 18 LDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIA 97 (237)
T ss_pred eeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEEEcCCchhccchHHHHhh
Confidence 45799999999999999999999999999999999999999999999988777777788999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..+.+++.++++..++.++++++|.++++.+...+.+|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~L 139 (237)
T cd03252 98 LADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGL 139 (237)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcC
Confidence 533 23456678888889999999999888887766555443
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-19 Score=177.69 Aligned_cols=120 Identities=28% Similarity=0.453 Sum_probs=103.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+|.+|..|+++|+.
T Consensus 18 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~enl~ 97 (234)
T cd03251 18 LRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIA 97 (234)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEEeCCCCeeccccHHHHhh
Confidence 45799999999999999999999999999999999999999999999988777777788999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.+.++.+++.++.+.+|.++++.++....+
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 138 (234)
T cd03251 98 YGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVK 138 (234)
T ss_pred ccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCc
Confidence 542 2355677888888999999998888888776655443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.3e-19 Score=177.97 Aligned_cols=120 Identities=36% Similarity=0.562 Sum_probs=104.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++|++++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|.+|+++|+.
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~~~ 98 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIR 98 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEEecCCchhhhhHHHHHHh
Confidence 44799999999999999999999999999999999999999999999988777777888999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.++++.+++.++.+++|.++++.++....+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 139 (229)
T cd03254 99 LGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGN 139 (229)
T ss_pred ccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCc
Confidence 543 2356678889999999999999998888776554433
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.2e-19 Score=175.59 Aligned_cols=116 Identities=28% Similarity=0.364 Sum_probs=97.2
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCccccc-cc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFS-GT 555 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~-~T 555 (602)
..++++||+|++||+.||+|++|||||||++++.++.+|++|+|.+||+|+..++. +++|++||+|+|.+.|++ .|
T Consensus 20 ~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssrT 99 (339)
T COG1135 20 TALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRT 99 (339)
T ss_pred eeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccch
Confidence 34567999999999999999999999999999999999999999999999987764 567889999999999997 79
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccCCCccccCCC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G 599 (602)
|.+|+.+. ... -.+++.+.|+.+||.++.+ .||.++++|.
T Consensus 100 V~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~----~yP~qLSGGQ 146 (339)
T COG1135 100 VFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKAD----RYPAQLSGGQ 146 (339)
T ss_pred HHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhc----cCchhcCcch
Confidence 99998632 112 2356889999999997654 5777776653
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-19 Score=177.38 Aligned_cols=120 Identities=33% Similarity=0.549 Sum_probs=105.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++|+++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+++.++|+||+|.+|+.|+++|+.
T Consensus 17 l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~~nl~ 96 (236)
T cd03253 17 LKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIR 96 (236)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEECCCChhhcchHHHHHh
Confidence 45799999999999999999999999999999999999999999999998877777888999999999999999999996
Q ss_pred CC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
.. ...+++++.++++.+++.+..+.+|.++++.+.....+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~ 137 (236)
T cd03253 97 YGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLK 137 (236)
T ss_pred hcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence 43 23456678888999999999899998888877655544
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-19 Score=174.77 Aligned_cols=120 Identities=38% Similarity=0.594 Sum_probs=103.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++|+++||+|+||||||||+++|+|+.+|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 20 l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 99 (220)
T cd03245 20 LDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNIT 99 (220)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEEEeCCCCccccchHHHHhh
Confidence 45799999999999999999999999999999999999999999999987777666778899999999998889999986
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ..+.+++.++++.+++.+..+++|.++++.+.....+
T Consensus 100 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (220)
T cd03245 100 LGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRG 140 (220)
T ss_pred cCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCcc
Confidence 432 2345678889999999999999999898876655443
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-19 Score=156.91 Aligned_cols=103 Identities=28% Similarity=0.385 Sum_probs=93.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||.++|+||+|||||||+|+++-+..|++|++.+.|++++..++.++|.+|+|+.|.|.||.+||.+|+-
T Consensus 19 l~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVeDNli 98 (223)
T COG4619 19 LNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLI 98 (223)
T ss_pred ecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchhhccc
Confidence 44799999999999999999999999999999999999999999999999999999999999999999999999999985
Q ss_pred C-C----CCCcHHHHHHHHHHcCCCccc
Q psy3001 562 P-V----GESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 562 ~-~----~~~~~~~i~~al~~~~l~~~~ 584 (602)
+ . ...+.+...+.++++++.+.+
T Consensus 99 fP~~~r~rr~dr~aa~~llar~~l~~~~ 126 (223)
T COG4619 99 FPWQIRNRRPDRAAALDLLARFALPDSI 126 (223)
T ss_pred cchHHhccCCChHHHHHHHHHcCCchhh
Confidence 2 1 223556788899999998753
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-19 Score=173.62 Aligned_cols=111 Identities=29% Similarity=0.442 Sum_probs=97.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC-CCChhhhhccceEecCCc--cccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR-TLGLHTLRSRLTIIPQDP--VLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~-~~~~~~lr~~i~~V~Qdp--~lf~~Tv~ 557 (602)
.+.++||++.+||.++|+|+||||||||+++|.|+++|++|+|.++|.+++ ..+..++|+++|||+||| ++|..||.
T Consensus 19 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q~~~~tV~ 98 (235)
T COG1122 19 ALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVE 98 (235)
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceEEEEECcccccccCcHH
Confidence 345799999999999999999999999999999999999999999999988 477889999999999999 89999999
Q ss_pred cccCCCCC---Cc----HHHHHHHHHHcCCCccccccccCC
Q psy3001 558 LNLDPVGE---SS----DEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 558 ~nl~~~~~---~~----~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+++.+... .+ ++++.++|+.+++.++.++.|+.|
T Consensus 99 ~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~L 139 (235)
T COG1122 99 DEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNL 139 (235)
T ss_pred HHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCcccc
Confidence 99864422 12 345899999999999988777654
|
|
| >KOG0065|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-20 Score=206.75 Aligned_cols=201 Identities=21% Similarity=0.286 Sum_probs=142.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC--CCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE--PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
++||+=-+.|| -.+||+|+||||||||+++|+|=.. ..+|+|.++|.+..+ ...++.+|||.|+....
T Consensus 807 L~~V~G~~kPG-~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~------ 876 (1391)
T KOG0065|consen 807 LNNVSGAFKPG-VLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHS------ 876 (1391)
T ss_pred hhcCceEecCC-ceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccC------
Confidence 44444444444 6799999999999999999999754 358999999998764 67889999999962211
Q ss_pred CceeEeeecccceeeeccccceeecccc--cccccccccchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCCCChhhH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDV--KPLIITPFCSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lsgs~Gq~ 355 (602)
| +.+ ..|++ .+.+..+......+..+-.++..+.++.. ..+.+++..|..|| ..||
T Consensus 877 -~----------------~~T--VrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs--~eQR 935 (1391)
T KOG0065|consen 877 -P----------------ELT--VRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLS--TEQR 935 (1391)
T ss_pred -c----------------ccc--hHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCC--HHHh
Confidence 0 111 11111 11111112222223333333444443321 12346777777777 5999
Q ss_pred HHHHHHHHHhhCC-CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccc-c-cCCeEEEEe-CceEEeecC
Q psy3001 356 QLICLARALLRKT-KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI-I-DSDRVLVLD-KGLVVEFDS 430 (602)
Q Consensus 356 Qrl~lAral~~~p-~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i-~-~~d~i~~l~-~G~i~~~g~ 430 (602)
.|+.||=-|+.+| .||+||||||+||.+++..+.+.++++. .|+||+..=|.++-. . ..|+++.|+ .|+.+-+|+
T Consensus 936 KrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~ 1015 (1391)
T KOG0065|consen 936 KRLTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGP 1015 (1391)
T ss_pred ceeeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecC
Confidence 9999999999999 8999999999999999999999999975 589999999999864 3 489999996 577787776
Q ss_pred hh
Q psy3001 431 PS 432 (602)
Q Consensus 431 ~~ 432 (602)
..
T Consensus 1016 lG 1017 (1391)
T KOG0065|consen 1016 LG 1017 (1391)
T ss_pred cc
Confidence 43
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-19 Score=160.06 Aligned_cols=105 Identities=30% Similarity=0.385 Sum_probs=92.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPV 563 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~ 563 (602)
.+++|..||+|||+||+|||||||+++++|+..|.+|+|+|+|+|....++. ++-+++++|+..||.. ||..|+..+
T Consensus 18 fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVSmlFQEnNLFaHLtV~qNigLG 95 (231)
T COG3840 18 FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLG 95 (231)
T ss_pred EEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChhhhhhccccchhhhhhhhhccc
Confidence 6889999999999999999999999999999999999999999999887765 4469999999999998 999998632
Q ss_pred ----CC---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 564 ----GE---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 564 ----~~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
-+ ..++++..++.++||.++.+++|..|
T Consensus 96 l~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~L 130 (231)
T COG3840 96 LSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGEL 130 (231)
T ss_pred CCcccccCHHHHHHHHHHHHHhChhhHhhhCcccc
Confidence 22 24567999999999999999887754
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.2e-19 Score=169.34 Aligned_cols=104 Identities=25% Similarity=0.314 Sum_probs=87.6
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++.+||.|+|+||+|||||||+++++|+.+|++|+|.++|+++... ...++||+|++.||+= ||++|
T Consensus 18 vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~vFQ~~~LlPW~Tv~~N 92 (248)
T COG1116 18 VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDN 92 (248)
T ss_pred EeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEEEeccCcccchhhHHhh
Confidence 45679999999999999999999999999999999999999999999877332 4579999999999974 99999
Q ss_pred cCCC-------CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV-------GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~-------~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... .....+.+.++|+.+||.+|-++.|+
T Consensus 93 V~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~ 129 (248)
T COG1116 93 VALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH 129 (248)
T ss_pred heehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc
Confidence 8532 11234569999999999988775444
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.8e-19 Score=172.49 Aligned_cols=121 Identities=21% Similarity=0.260 Sum_probs=100.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhhhccceEecCCccccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQDPVLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~lr~~i~~V~Qdp~lf~~Tv 556 (602)
.++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. ...|+.++|+||+|.+|..|+
T Consensus 16 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~t~ 95 (218)
T cd03290 16 TLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLNATV 95 (218)
T ss_pred ceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceEEEEcCCCccccccH
Confidence 3457999999999999999999999999999999999999999999998765432 234678999999999998899
Q ss_pred hcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 557 RLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 557 ~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
++|+.......+++.+++++.+++.+..+.+|.++++.++....+
T Consensus 96 ~~nl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 140 (218)
T cd03290 96 EENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGIN 140 (218)
T ss_pred HHHHhhcCcCCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCc
Confidence 999975434456667888999999888888888877766554433
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-19 Score=175.37 Aligned_cols=120 Identities=35% Similarity=0.581 Sum_probs=101.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|+.||++|+
T Consensus 18 ~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l 97 (238)
T cd03249 18 ILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENI 97 (238)
T ss_pred ceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEEEECCchhhhhhhHHHHh
Confidence 34579999999999999999999999999999999999999999999998877766677789999999999989999998
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~ 600 (602)
.... ....+++.+.++..++.++...+|.++++.+.....
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 138 (238)
T cd03249 98 RYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGS 138 (238)
T ss_pred hccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCc
Confidence 7532 234566778888889988888888887776554433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.6e-18 Score=175.15 Aligned_cols=212 Identities=25% Similarity=0.358 Sum_probs=151.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec-CCCChHHHh-hccceecccchhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI-RTLGLHTLR-SRLTIIPQVLATIFV 274 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~-~~~~~~~~~-~~i~~v~Q~~~~~~~ 274 (602)
+...++++||..+.| |++||.|-.|-|-+-|+.+|+|+.+|.+|+|.++|.++ ..+++..++ ..+++||.+.--.-.
T Consensus 270 ~~~~v~~vs~~Vr~G-EIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Gl 348 (501)
T COG3845 270 GVTAVKDVSFEVRAG-EIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGL 348 (501)
T ss_pred CCceeeeeeeEEecC-cEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccCChhhccCcc
Confidence 356799999999998 99999999999999999999999999999999999997 666777665 579999987311000
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccc----ccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL----IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
+ + ..++.+|--+... +......+.........+..+.++-...++ ...-.+||
T Consensus 349 v----~----------------~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~--~~~a~~LS- 405 (501)
T COG3845 349 V----L----------------DLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSP--DAPARSLS- 405 (501)
T ss_pred c----c----------------CccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCC--CcchhhcC-
Confidence 0 0 1111111000000 000001111222223333334332111111 11223455
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
||.+||+-+||-|.++|++||..+||.+||..+.+.+.+.|.+.+ +|+.|++||-+++++.. ||||.||.+|+++..
T Consensus 406 -GGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 406 -GGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred -CcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 699999999999999999999999999999999999999887764 57999999999999998 999999999999877
Q ss_pred cChhH
Q psy3001 429 DSPSV 433 (602)
Q Consensus 429 g~~~~ 433 (602)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 66654
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-19 Score=167.91 Aligned_cols=114 Identities=28% Similarity=0.375 Sum_probs=92.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hh-hccceEecCCcccccc-ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TL-RSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~l-r~~i~~V~Qdp~lf~~-Tv 556 (602)
+.++||+|++||.|+|+||+|||||||+++|.|+.+|++|+|.++|+|+...+.. .+ |+.||||+|+..|++. ||
T Consensus 21 L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~ltv 100 (226)
T COG1136 21 LKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTV 100 (226)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCCCH
Confidence 4579999999999999999999999999999999999999999999999988743 34 4569999999999876 99
Q ss_pred hcccC----CCCC---CcHHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 557 RLNLD----PVGE---SSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 557 ~~nl~----~~~~---~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
.+|+. .... ...+.+.+.++.+||.+... +.+++++++|
T Consensus 101 ~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~---~~~p~eLSGG 146 (226)
T COG1136 101 LENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL---KKKPSELSGG 146 (226)
T ss_pred HHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc---cCCchhcCHH
Confidence 99985 2222 23556888999999986443 2355555543
|
|
| >KOG0066|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.9e-19 Score=176.20 Aligned_cols=181 Identities=24% Similarity=0.306 Sum_probs=118.5
Q ss_pred cEEEeeeEEEEecCC-------------ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccce
Q psy3001 198 EVEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~-------------e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~ 264 (602)
.+-+.||+|.|+... ..+|||||||.|||||+++|.|-++|..|+..-+- |-+||+
T Consensus 586 vLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG~ 654 (807)
T KOG0066|consen 586 VLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIGW 654 (807)
T ss_pred eeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeeec
Confidence 355778888875421 56999999999999999999999999999876543 446777
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCccccc
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
..|...-... -.++..+.+. ...++ -+..+...+.++....... +-.
T Consensus 655 FdQh~~E~L~---------------------------~Eetp~EyLq--r~FNl--pyq~ARK~LG~fGL~sHAH--Tik 701 (807)
T KOG0066|consen 655 FDQHANEALN---------------------------GEETPVEYLQ--RKFNL--PYQEARKQLGTFGLASHAH--TIK 701 (807)
T ss_pred hhhhhHHhhc---------------------------cccCHHHHHH--HhcCC--ChHHHHHHhhhhhhhhccc--eEe
Confidence 7775221110 0000000000 00000 0222222233221111000 001
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCC-eEEEEeCc
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSD-RVLVLDKG 423 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d-~i~~l~~G 423 (602)
...|| ||||-||++|-.-+..|+||||||||++||.++...+.++|+.+. ..||+|||+-..+...| ..+|+++-
T Consensus 702 ikdLS--GGQKaRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q 777 (807)
T KOG0066|consen 702 IKDLS--GGQKARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQ 777 (807)
T ss_pred eeecC--CcchHHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccC
Confidence 12355 699999999999999999999999999999999999999998864 47999999999987743 35666665
Q ss_pred eEE
Q psy3001 424 LVV 426 (602)
Q Consensus 424 ~i~ 426 (602)
.|-
T Consensus 778 ~i~ 780 (807)
T KOG0066|consen 778 GID 780 (807)
T ss_pred Chh
Confidence 543
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.9e-19 Score=171.17 Aligned_cols=106 Identities=25% Similarity=0.313 Sum_probs=87.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc---cccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP---VLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp---~lf~~Tv~ 557 (602)
.++++||++++|++++|+||||||||||+|+|+|+++|++|+|.+.|.+.+.... +.+||||||.. +-|+-||+
T Consensus 19 vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgYVPQ~~~~d~~fP~tV~ 95 (254)
T COG1121 19 VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVK 95 (254)
T ss_pred eeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEEcCcccccCCCCCcCHH
Confidence 4568999999999999999999999999999999999999999999987655432 46899999966 34888998
Q ss_pred cccCCC-----------CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV-----------GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~-----------~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+-...+ .+.+.+++.+||+++|+.++.++.-+
T Consensus 96 d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~ 138 (254)
T COG1121 96 DVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIG 138 (254)
T ss_pred HHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCccc
Confidence 754321 12235789999999999998876544
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-19 Score=170.02 Aligned_cols=109 Identities=30% Similarity=0.377 Sum_probs=96.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++| +++|+||+|.+|+.|+++|+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~i~~~~q~~~l~~~t~~enl 86 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------SIAYVSQEPWIQNGTIRENI 86 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------EEEEEecCchhccCcHHHHh
Confidence 34579999999999999999999999999999999999999999998 69999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.+.....+++.+++++.+++.+++..+|.++++.+...+.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l 128 (204)
T cd03250 87 LFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINL 128 (204)
T ss_pred ccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcC
Confidence 875445566788899999999999999988888777665543
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.6e-20 Score=167.11 Aligned_cols=108 Identities=26% Similarity=0.415 Sum_probs=91.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh-hhccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT-LRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~-lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+..+||++++||+||+.|||||||||.+.++.|+.+|++|+|.+||.||+..|... .|..|||.||+|..|-+ ||++|
T Consensus 20 v~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE~SIFr~LtV~dN 99 (243)
T COG1137 20 VNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDN 99 (243)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcccccccchHhhcCcHHHH
Confidence 34799999999999999999999999999999999999999999999999999865 47789999999999976 99999
Q ss_pred cCC----CC---C--CcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDP----VG---E--SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~----~~---~--~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
|.. .. + .+.+++.+.|+.+++.+...+...
T Consensus 100 i~~vlE~~~~d~~~~~~~~~l~~LL~ef~i~hlr~~~a~ 138 (243)
T COG1137 100 IMAVLEIREKDLKKAERKEELDALLEEFHITHLRDSKAY 138 (243)
T ss_pred HHHHHhhhhcchhHHHHHHHHHHHHHHhchHHHhcCccc
Confidence 842 11 1 233457799999999887665433
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-19 Score=173.29 Aligned_cols=120 Identities=28% Similarity=0.438 Sum_probs=97.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.+++|++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+....+++++|+||+|.+|..||++|+.
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~~nl~ 109 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIA 109 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHhhEEEEecccHHHhhhHHHHhc
Confidence 44699999999999999999999999999999999999999999999887776667788899999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGEN 601 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~ 601 (602)
... ....+++.+..+..++.++++.+|.++++.+.....+
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~ 150 (226)
T cd03248 110 YGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQ 150 (226)
T ss_pred cccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCc
Confidence 432 2334445555566677777777776676665554443
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.5e-19 Score=194.84 Aligned_cols=101 Identities=22% Similarity=0.320 Sum_probs=93.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++|+++||+|+||||||||+++|+|+++|++|+|.+||++++..+.+++|++++||||||.+|++|+++|
T Consensus 339 l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n-- 416 (547)
T PRK10522 339 VGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE-- 416 (547)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCHHHHhhheEEEecChhHHHHhhccc--
Confidence 457999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHcCCCcccc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVS 585 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~ 585 (602)
....++++++++++.+++.++.+
T Consensus 417 -~~~~~~~~~~~~~~~~~l~~~~~ 439 (547)
T PRK10522 417 -GKPANPALVEKWLERLKMAHKLE 439 (547)
T ss_pred -cCchHHHHHHHHHHHcCCchhhh
Confidence 23567888999999999987655
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.77 E-value=3.6e-19 Score=184.19 Aligned_cols=110 Identities=27% Similarity=0.350 Sum_probs=94.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh----hccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...++.++ |++++||||++.+|+. |
T Consensus 8 ~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~~T 87 (363)
T TIGR01186 8 GVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPHMT 87 (363)
T ss_pred eEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCCCC
Confidence 3457999999999999999999999999999999999999999999999998887766 7789999999999975 9
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|++|+... ... ..+++.++++.++|.++.++.|..
T Consensus 88 V~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~ 129 (363)
T TIGR01186 88 ILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDE 129 (363)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhh
Confidence 99998532 111 245688999999998887776654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-19 Score=165.03 Aligned_cols=115 Identities=30% Similarity=0.419 Sum_probs=94.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+++++|+|++||++||+|++|||||||+|+|.|+++|++|+|+++|+|+...+.. ++|+++|+++|.--||+. ||
T Consensus 23 Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~r~GvlFQ~gALFssltV 102 (263)
T COG1127 23 ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTV 102 (263)
T ss_pred EecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHhheeEEeeccccccccch
Confidence 35579999999999999999999999999999999999999999999999988854 569999999999999987 99
Q ss_pred hcccCC-C---CCCcHHH----HHHHHHHcCCCccccccccCCCccccCC
Q psy3001 557 RLNLDP-V---GESSDEA----IWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 557 ~~nl~~-~---~~~~~~~----i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
+||+.. . .+.+++. +..-|+.+||..-. -+.+|.++++|
T Consensus 103 ~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~---~~~~PsELSGG 149 (263)
T COG1127 103 FENVAFPLREHTKLPESLIRELVLMKLELVGLRGAA---ADLYPSELSGG 149 (263)
T ss_pred hHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhh---hhhCchhhcch
Confidence 999863 1 2234443 44557788988742 23466676654
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-19 Score=166.68 Aligned_cols=98 Identities=30% Similarity=0.428 Sum_probs=82.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+..+||++++||+++++|+||+|||||+|+|+|+.++.+|+|.++|+||...++++. |..|+||||...+|+. ||.||
T Consensus 19 L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~~LTVeEN 98 (237)
T COG0410 19 LRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEEN 98 (237)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeEeCcccccchhhCcHHHH
Confidence 457999999999999999999999999999999999999999999999999998765 7789999999999976 99999
Q ss_pred cCCCCC------CcHHHHHHHHHHcC
Q psy3001 560 LDPVGE------SSDEAIWKALELAH 579 (602)
Q Consensus 560 l~~~~~------~~~~~i~~al~~~~ 579 (602)
|..... ..+..++++.+.+=
T Consensus 99 L~~g~~~~~~~~~~~~~~e~v~~lFP 124 (237)
T COG0410 99 LLLGAYARRDKEAQERDLEEVYELFP 124 (237)
T ss_pred HhhhhhcccccccccccHHHHHHHCh
Confidence 963311 11222666666653
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.9e-19 Score=171.62 Aligned_cols=110 Identities=28% Similarity=0.364 Sum_probs=91.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. .+|++++|+||+|.+|. .||
T Consensus 18 il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 97 (216)
T TIGR00960 18 ALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDRTV 97 (216)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHhceEEecCccccccccH
Confidence 34579999999999999999999999999999999999999999999998765533 36778999999999886 499
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.++.++.|..
T Consensus 98 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 138 (216)
T TIGR00960 98 YDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQ 138 (216)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhh
Confidence 9998631 11 1345689999999998877766653
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-19 Score=172.71 Aligned_cols=108 Identities=31% Similarity=0.400 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCcccccc-chh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~~-Tv~ 557 (602)
++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ..+|++++||||+|.+|.. ||+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 95 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVF 95 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcceEEEccCcccCCCCcHH
Confidence 457999999999999999999999999999999999999999999999877654 4567889999999999876 999
Q ss_pred cccCCC----CCCc----HHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV----GESS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~----~~~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... ...+ .+++.++++.+++.++.++.|.
T Consensus 96 ~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (235)
T cd03261 96 ENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPA 135 (235)
T ss_pred HHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChh
Confidence 998532 1112 3457889999999877665554
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-18 Score=168.24 Aligned_cols=108 Identities=23% Similarity=0.338 Sum_probs=90.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...+++++|+||+| .+|..|+++
T Consensus 15 ~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~q~~~~~~~~~tv~e 91 (205)
T cd03226 15 ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVMQDVDYQLFTDSVRE 91 (205)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEecChhhhhhhccHHH
Confidence 3457999999999999999999999999999999999999999999998753 34567899999998 467789999
Q ss_pred ccCCCC---CCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... ....+++.++++.+++.++.++.|..|
T Consensus 92 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 127 (205)
T cd03226 92 ELLLGLKELDAGNEQAETVLKDLDLYALKERHPLSL 127 (205)
T ss_pred HHhhhhhhcCccHHHHHHHHHHcCCchhcCCCchhC
Confidence 986421 123457899999999998877766543
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.8e-19 Score=179.98 Aligned_cols=114 Identities=22% Similarity=0.337 Sum_probs=92.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccC-----CCCceEEECCeecCC--CChhhhhccceEecCCcccccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-----PADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-----~~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Qdp~lf~~ 554 (602)
++++||+|++||++||+|+||||||||+++|+|+++ |++|+|.+||+++.. .+...+|++++||||+|++|++
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~~ 177 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEM 177 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchHhhhccEEEEecCCccCCC
Confidence 447999999999999999999999999999999996 579999999999974 3446778899999999999999
Q ss_pred chhcccCCCC---CCcHHH-----HHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 555 TLRLNLDPVG---ESSDEA-----IWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 555 Tv~~nl~~~~---~~~~~~-----i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|+++|+.... ..++++ +.++++.++|++ ++++.++++|.+|
T Consensus 178 ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~-------~l~~~~~~~~~~L 226 (329)
T PRK14257 178 SIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWD-------EVKDDLDKAGNAL 226 (329)
T ss_pred cHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcc-------hhhhhhhCCcccC
Confidence 9999997321 223332 577788888764 3456677777765
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.6e-19 Score=176.83 Aligned_cols=111 Identities=26% Similarity=0.364 Sum_probs=93.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc--ccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV--LFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~--lf~~Tv~~ 558 (602)
.+.++||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...+|++++||||+|. ++..||++
T Consensus 22 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e 101 (279)
T PRK13650 22 TLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVED 101 (279)
T ss_pred eeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhceEEEcChHHhcccccHHH
Confidence 3457999999999999999999999999999999999999999999999987777778889999999983 55679999
Q ss_pred ccCCCC---CC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... .. .++++.++++.++|.++.++.|..|
T Consensus 102 ni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13650 102 DVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARL 141 (279)
T ss_pred HHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccC
Confidence 996421 11 2356899999999988877766543
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-19 Score=176.67 Aligned_cols=109 Identities=25% Similarity=0.334 Sum_probs=93.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~n 559 (602)
+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..+++++++|+||+| .+|..||++|
T Consensus 21 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~e~ 100 (274)
T PRK13647 21 LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDD 100 (274)
T ss_pred eeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEEEecChhhhhccCcHHHH
Confidence 45799999999999999999999999999999999999999999999998777777888999999999 5778899999
Q ss_pred cCCCC---CC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPVG---ES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.... .. .++++.++++.++|.++.++.|..
T Consensus 101 l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 138 (274)
T PRK13647 101 VAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYH 138 (274)
T ss_pred HHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhh
Confidence 96421 11 235688999999998877776654
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-19 Score=168.43 Aligned_cols=111 Identities=29% Similarity=0.369 Sum_probs=94.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
.+.++||++++||++|++|||||||||++++|+|+|+|++|+|.++|+||...+++++ |..|+--+|.+.+|++ ||-|
T Consensus 19 Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~~rlF~~lTVlE 98 (250)
T COG0411 19 AVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQITRLFPGLTVLE 98 (250)
T ss_pred EEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeecccccccCCCcHHH
Confidence 3457999999999999999999999999999999999999999999999999998876 6679999999999977 9999
Q ss_pred ccCCC-------------------CCCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPV-------------------GESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~-------------------~~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+... .....|+..+.|+.+||.+..+.....|
T Consensus 99 Nv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~a~~~A~~L 150 (250)
T COG0411 99 NVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGELADRPAGNL 150 (250)
T ss_pred HHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchhhcchhhcC
Confidence 97421 1123466888999999998877655544
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=166.09 Aligned_cols=108 Identities=24% Similarity=0.358 Sum_probs=88.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC--ChhhhhccceEecCCc--cccccchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQDP--VLFSGTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~i~~V~Qdp--~lf~~Tv~ 557 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++... +...++++++|+||+| .+|..|++
T Consensus 8 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~tv~ 87 (190)
T TIGR01166 8 LKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLFAADVD 87 (190)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccccccHH
Confidence 4579999999999999999999999999999999999999999999988522 2345677899999999 46778999
Q ss_pred cccCCC---CCCc----HHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV---GESS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~---~~~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... ...+ ++++.++++.+++.++.++.|.
T Consensus 88 ~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 126 (190)
T TIGR01166 88 QDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTH 126 (190)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChh
Confidence 998532 1111 3468899999999877666554
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-18 Score=169.85 Aligned_cols=110 Identities=27% Similarity=0.306 Sum_probs=90.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh----hhccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~----lr~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+... .+++++|+||+|.+|.+ |
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t 98 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLT 98 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCCc
Confidence 355799999999999999999999999999999999999999999999988765432 35689999999999876 9
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|++|+... ... .++++.++++.+++.++.++.|..
T Consensus 99 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (218)
T cd03255 99 ALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSE 140 (218)
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhh
Confidence 99998532 111 235688999999998776665543
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=170.61 Aligned_cols=108 Identities=31% Similarity=0.486 Sum_probs=91.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...++..+|++++|+||+|.+|..|+++|+.
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~tv~e~l~ 98 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIE 98 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEEEecCchhchhhHHHHHh
Confidence 45799999999999999999999999999999999999999999999998777777788999999999999889999986
Q ss_pred CCC---CCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 562 PVG---ESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 562 ~~~---~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
... ....+++.++++.+++. ++..+.|.
T Consensus 99 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (241)
T PRK14250 99 YGPMLKGEKNVDVEYYLSIVGLNKEYATRDVK 130 (241)
T ss_pred cchhhcCcHHHHHHHHHHHcCCCHHHhhCCcc
Confidence 421 12345688899999996 45554443
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-18 Score=171.10 Aligned_cols=109 Identities=25% Similarity=0.285 Sum_probs=89.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hh-ccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr-~~i~~V~Qdp~lf~~-T 555 (602)
.+.++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+..+ ++ ++++|+||+|.+|.. |
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~t 103 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFT 103 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCCC
Confidence 345799999999999999999999999999999999999999999999998776543 33 579999999988875 9
Q ss_pred hhcccCC----CCC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 556 LRLNLDP----VGE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 556 v~~nl~~----~~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+++|+.. ... ..++++.++++.+++.++.++.|.
T Consensus 104 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 144 (233)
T PRK11629 104 ALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPS 144 (233)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 9999853 111 123568899999999877665554
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-18 Score=164.50 Aligned_cols=76 Identities=8% Similarity=0.041 Sum_probs=64.1
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
+|+||+..+++++ .+|+++++|||++++|+.+...+. ..++.+. .+.++|++||+.+....||++.++++|++...
T Consensus 94 ~g~~~~~~i~~~~-~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 94 SHMKNIARILQHA-DPDSLVLLDELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFD 171 (200)
T ss_pred HHHHHHHHHHHhC-CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEe
Confidence 5999999999885 899999999999999999988875 4566554 36899999999655445999999999999754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-18 Score=167.88 Aligned_cols=108 Identities=29% Similarity=0.416 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc--ccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV--LFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~--lf~~Tv~~n 559 (602)
+.++||++.+|+++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+|. ++..|+++|
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~t~~~~ 96 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEE 96 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEEecChhhhcCCCcHHHH
Confidence 457999999999999999999999999999999999999999999999987766777889999999984 567799999
Q ss_pred cCCC---CCC----cHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV---GES----SDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... ... .++++.++++.+++.++.++.|.
T Consensus 97 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 133 (211)
T cd03225 97 VAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPF 133 (211)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 8532 111 23457889999999877666554
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-18 Score=166.75 Aligned_cols=106 Identities=26% Similarity=0.354 Sum_probs=89.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...+. .+++++|+||+|.+|.+ |+++|+..
T Consensus 16 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~~q~~~~~~~~tv~enl~~ 93 (211)
T cd03298 16 HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSMLFQENNLFAHLTVEQNVGL 93 (211)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEEecccccCCCCcHHHHHhc
Confidence 5899999999999999999999999999999999999999999999876543 35689999999999875 99999863
Q ss_pred CC----C---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 563 VG----E---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 563 ~~----~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
.. . ..++++.++++.+++.++..+.|..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGEL 129 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccC
Confidence 21 1 23456899999999988777666543
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-18 Score=175.02 Aligned_cols=110 Identities=26% Similarity=0.345 Sum_probs=93.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~n 559 (602)
+.++||+|.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+| .++..||++|
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~tv~en 102 (279)
T PRK13635 23 LKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDD 102 (279)
T ss_pred eeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheEEEEeCHHHhcccccHHHH
Confidence 45799999999999999999999999999999999999999999999998877777788999999998 4567799999
Q ss_pred cCCCC---CC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPVG---ES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+.... .. .++++.++++.++|.++.++.|..|
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~L 141 (279)
T PRK13635 103 VAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRL 141 (279)
T ss_pred HhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccC
Confidence 86421 11 2355899999999998888777643
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3e-18 Score=167.54 Aligned_cols=107 Identities=26% Similarity=0.337 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...++++++|+||+|.+|..|+++|+.
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~~tv~enl~ 102 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLI 102 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccEEEecccccccccHHHHHH
Confidence 45799999999999999999999999999999999999999999999998877777788999999999999889999985
Q ss_pred C----CCC-CcHHHHHHHHHHcCCCc-cccccc
Q psy3001 562 P----VGE-SSDEAIWKALELAHLNT-FVSNLP 588 (602)
Q Consensus 562 ~----~~~-~~~~~i~~al~~~~l~~-~~~~~~ 588 (602)
. ... ..++++.++++.+++.+ ..++.+
T Consensus 103 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (225)
T PRK10247 103 FPWQIRNQQPDPAIFLDDLERFALPDTILTKNI 135 (225)
T ss_pred hHHhhcCCChHHHHHHHHHHHcCCChHHhcCCc
Confidence 3 111 23456789999999963 444333
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-18 Score=179.16 Aligned_cols=107 Identities=21% Similarity=0.263 Sum_probs=91.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
++++||++.+||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 20 l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi 97 (356)
T PRK11650 20 IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAMVFQNYALYPHMSVRENM 97 (356)
T ss_pred EeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCccccCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 4689999999999975 999999
Q ss_pred CCCC---CC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---ES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... .. ..+++.++++.++|.++.++.|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 134 (356)
T PRK11650 98 AYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRE 134 (356)
T ss_pred HhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhh
Confidence 6321 11 235688999999999887776653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-18 Score=177.32 Aligned_cols=109 Identities=28% Similarity=0.365 Sum_probs=91.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..+ +|++|+||||++.+|. .||
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~tv 99 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTV 99 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhcCEEEEECCccccccCcH
Confidence 456799999999999999999999999999999999999999999999998876543 5778999999999985 699
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCcccccccc
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
++|+... ... ..+++.++++.+||.++.++.|.
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~ 139 (343)
T TIGR02314 100 FGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPS 139 (343)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChh
Confidence 9998521 111 23458899999999887665544
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=174.63 Aligned_cols=109 Identities=29% Similarity=0.490 Sum_probs=89.6
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC--hhhhhccceEecCCc--cccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQDP--VLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~--~~~lr~~i~~V~Qdp--~lf~~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.+++..+ ...++++++||||+| .+|..||
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~tv 101 (287)
T PRK13637 22 ALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETI 101 (287)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHhhceEEEecCchhccccccH
Confidence 355799999999999999999999999999999999999999999999997644 356788999999998 5678899
Q ss_pred hcccCCCC---CCc----HHHHHHHHHHcCCC--cccccccc
Q psy3001 557 RLNLDPVG---ESS----DEAIWKALELAHLN--TFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~~---~~~----~~~i~~al~~~~l~--~~~~~~~~ 589 (602)
++|+.... ..+ .+++.++++.++|. ++.++.|.
T Consensus 102 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~ 143 (287)
T PRK13637 102 EKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPF 143 (287)
T ss_pred HHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcc
Confidence 99986321 122 24588999999997 45554443
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=171.09 Aligned_cols=105 Identities=19% Similarity=0.326 Sum_probs=88.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccC---CCCceEEECCeecCCCChhhhhccceEecCCccccccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE---PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~---~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~ 557 (602)
.++++||++.+||++||+|+||||||||+++|+|+++ |++|+|.++|+++...+....|++++|+||+|.+|..|++
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~~tv~ 96 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKNVGMVFQQPNVFVKSIY 96 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhhEEEEecCCccccccHH
Confidence 3457999999999999999999999999999999984 6999999999999877777778899999999999999999
Q ss_pred cccCCCC---------CCcHHHHHHHHHHcCCCcccc
Q psy3001 558 LNLDPVG---------ESSDEAIWKALELAHLNTFVS 585 (602)
Q Consensus 558 ~nl~~~~---------~~~~~~i~~al~~~~l~~~~~ 585 (602)
+|+.... ...++++.++++.+++.+++.
T Consensus 97 eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 133 (246)
T PRK14269 97 ENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133 (246)
T ss_pred HHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh
Confidence 9985321 112345788999999975443
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-18 Score=165.12 Aligned_cols=95 Identities=60% Similarity=0.898 Sum_probs=84.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+++++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+..++|++++|+||+|.+|.+|+++|+.
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~tv~~~l~ 103 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLD 103 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhhEEEEecCCcccCccHHHHhc
Confidence 44699999999999999999999999999999999999999999999998777777888999999999999999999997
Q ss_pred CCCCCcHHHHHHHHH
Q psy3001 562 PVGESSDEAIWKALE 576 (602)
Q Consensus 562 ~~~~~~~~~i~~al~ 576 (602)
.....+.+++.++++
T Consensus 104 ~~~~~~~~~~~~~l~ 118 (207)
T cd03369 104 PFDEYSDEEIYGALR 118 (207)
T ss_pred ccCCCCHHHHHHHhh
Confidence 554445566666665
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.3e-18 Score=156.49 Aligned_cols=101 Identities=39% Similarity=0.594 Sum_probs=91.2
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~ 561 (602)
++++|++++|++++|+|+||||||||+++|+|.++|++|+|.++|+++...+....++.++|+||++.+|.+ ||++|
T Consensus 2 ~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~-- 79 (137)
T PF00005_consen 2 KNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN-- 79 (137)
T ss_dssp EEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH--
T ss_pred CceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc--
Confidence 368999999999999999999999999999999999999999999999998888899999999999999877 59999
Q ss_pred CCCCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
..+++++++++.+++.++.++..+
T Consensus 80 ----~~~~~~~~~l~~l~~~~~~~~~~~ 103 (137)
T PF00005_consen 80 ----ESDERIEEVLKKLGLEDLLDRKIG 103 (137)
T ss_dssp ----HHHHHHHHHHHHTTHGGGTGSBGT
T ss_pred ----cccccccccccccccccccccccc
Confidence 556789999999998886555543
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=169.58 Aligned_cols=109 Identities=30% Similarity=0.378 Sum_probs=90.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC---hhhhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~---~~~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+ ...++++++|+||++.+|. .||
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv 95 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSV 95 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhccEEEcccCcccccCcH
Confidence 345799999999999999999999999999999999999999999999988765 3456788999999998886 599
Q ss_pred hcccCCC------------C---CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 557 RLNLDPV------------G---ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 557 ~~nl~~~------------~---~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
++|+... . ...++++.++++.+++.++.++.+.
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 143 (241)
T cd03256 96 LENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRAD 143 (241)
T ss_pred HHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcc
Confidence 9998521 0 1124568889999999876655443
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-18 Score=167.50 Aligned_cols=108 Identities=26% Similarity=0.342 Sum_probs=90.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv~ 557 (602)
+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. .++++++|+||+|.+|. .|++
T Consensus 18 l~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~tv~ 97 (214)
T TIGR02673 18 LHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVY 97 (214)
T ss_pred ecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEecChhhccCCcHH
Confidence 4579999999999999999999999999999999999999999999999876542 46778999999999886 5999
Q ss_pred cccCCC----C---CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPV----G---ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~----~---~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+... . ...+++++++++.+++.++..+.|.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 136 (214)
T TIGR02673 98 ENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPE 136 (214)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChh
Confidence 998531 1 1134568999999999877666554
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.74 E-value=3e-18 Score=168.01 Aligned_cols=107 Identities=30% Similarity=0.417 Sum_probs=89.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhcc-----CCCCceEEECCeecCCCC--hhhhhccceEecCCccccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII-----EPADGTIIIDGVDIRTLG--LHTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~-----~~~~G~I~i~g~~i~~~~--~~~lr~~i~~V~Qdp~lf~ 553 (602)
.+.++||++.+||++||+|+||||||||+++|+|++ +|++|+|.++|+++...+ ...++++++|+||+|.+|.
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 94 (227)
T cd03260 15 ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFP 94 (227)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHHHhhEEEEecCchhcc
Confidence 345799999999999999999999999999999999 999999999999987765 4566788999999999887
Q ss_pred cchhcccCCC----CCC----cHHHHHHHHHHcCCCcccccc
Q psy3001 554 GTLRLNLDPV----GES----SDEAIWKALELAHLNTFVSNL 587 (602)
Q Consensus 554 ~Tv~~nl~~~----~~~----~~~~i~~al~~~~l~~~~~~~ 587 (602)
.||++|+... ... .++++.++++.+++.+...+.
T Consensus 95 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~ 136 (227)
T cd03260 95 GSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDR 136 (227)
T ss_pred ccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhcc
Confidence 7999998532 111 235688999999998765544
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-18 Score=172.51 Aligned_cols=111 Identities=22% Similarity=0.380 Sum_probs=93.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.+++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+...++++++|+||+| .+|..||++
T Consensus 19 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~ 98 (277)
T PRK13652 19 ALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQ 98 (277)
T ss_pred eeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEEEecCcccccccccHHH
Confidence 345799999999999999999999999999999999999999999999988766677888999999998 467789999
Q ss_pred ccCCCC---CCc----HHHHHHHHHHcCCCccccccccCC
Q psy3001 559 NLDPVG---ESS----DEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 559 nl~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|+.... ..+ ++.+.++++.+++.++..+.|..|
T Consensus 99 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 138 (277)
T PRK13652 99 DIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHL 138 (277)
T ss_pred HHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccC
Confidence 985311 112 345889999999988777766543
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.2e-18 Score=167.32 Aligned_cols=110 Identities=30% Similarity=0.366 Sum_probs=90.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ...|+.++|+||+|.+|.. |+
T Consensus 16 ~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~t~ 95 (214)
T cd03292 16 ALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNV 95 (214)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHheEEEecCchhccCCcH
Confidence 3457999999999999999999999999999999999999999999999876653 2467789999999998874 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.+..++.|..
T Consensus 96 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (214)
T cd03292 96 YENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAE 136 (214)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhh
Confidence 9998532 11 1235688999999998776665543
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.8e-18 Score=167.13 Aligned_cols=107 Identities=22% Similarity=0.327 Sum_probs=89.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.+++|++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++.. ....++++++|+||+|.+|.. ||++|+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~e~l 99 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRLGFVSDSTGLYDRLTARENL 99 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhEEEecCCcccCcCCCHHHHH
Confidence 457999999999999999999999999999999999999999999999875 345667899999999999885 999998
Q ss_pred CCC----CC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV----GE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .. ...+++.++++.+++.++.++.+.
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 135 (218)
T cd03266 100 EYFAGLYGLKGDELTARLEELADRLGMEELLDRRVG 135 (218)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhh
Confidence 421 11 124568889999999877665544
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.1e-18 Score=177.19 Aligned_cols=107 Identities=22% Similarity=0.365 Sum_probs=91.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++.+||+++|+||||||||||+++|+|+++|++|+|.+||+++...++. +++++||||++.+|.. ||++|+
T Consensus 22 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~vfQ~~~lfp~~tv~eNi 99 (351)
T PRK11432 22 IDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENV 99 (351)
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999876643 5789999999999976 999999
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.- . ..++++.++++.+++.++.++.|..
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~ 136 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQ 136 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhh
Confidence 6421 1 1245789999999998877666543
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-18 Score=165.94 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=88.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccc-cchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~nl 560 (602)
++++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. .+++++|+||+|.+|. .|+++|+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v~q~~~~~~~~tv~~~l 93 (213)
T cd03259 16 LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMVFQDYALFPHLTVAENI 93 (213)
T ss_pred ecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEEcCchhhccCCcHHHHH
Confidence 457999999999999999999999999999999999999999999999876442 3568999999998886 5999998
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... . ...+++.++++.+++.++.++.|..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 130 (213)
T cd03259 94 AFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHE 130 (213)
T ss_pred HhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhh
Confidence 5321 1 1234588999999998877666543
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.2e-18 Score=178.38 Aligned_cols=108 Identities=30% Similarity=0.436 Sum_probs=93.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+..+++++++||||++.+ |..||++|+
T Consensus 19 L~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~~tv~e~v 98 (402)
T PRK09536 19 LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVV 98 (402)
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEEEccCCCCCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999988888889999999999987 567999998
Q ss_pred CCCC-----------CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPVG-----------ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~~-----------~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
.... ....+.++++++.+++.++.++.+.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~ 138 (402)
T PRK09536 99 EMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVT 138 (402)
T ss_pred HhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChh
Confidence 5321 1124568999999999887766544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-18 Score=171.08 Aligned_cols=104 Identities=32% Similarity=0.489 Sum_probs=89.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
..+.++||++++||++|++||||||||||+|+|+|+++|++|+|.++|.+...- ..+.++++||+||+|.++.. |+++
T Consensus 19 ~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy~~~~~~~~~~lT~~e 97 (293)
T COG1131 19 TALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGYVPQEPSLYPELTVRE 97 (293)
T ss_pred EEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEEEccCCCCCccccHHH
Confidence 345679999999999999999999999999999999999999999999987765 67788999999999998866 9999
Q ss_pred ccCCC----C---CCcHHHHHHHHHHcCCCccc
Q psy3001 559 NLDPV----G---ESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 559 nl~~~----~---~~~~~~i~~al~~~~l~~~~ 584 (602)
|+... + ...++++.++++.++|.+..
T Consensus 98 ~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~ 130 (293)
T COG1131 98 NLEFFARLYGLSKEEAEERIEELLELFGLEDKA 130 (293)
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHHcCCchhh
Confidence 98531 1 12356799999999999743
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.9e-18 Score=167.85 Aligned_cols=110 Identities=32% Similarity=0.427 Sum_probs=90.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCccccc-cch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFS-GTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~-~Tv 556 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.. ..+++++|+||+|.+|. .|+
T Consensus 20 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~t~ 99 (233)
T cd03258 20 ALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTV 99 (233)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCCcH
Confidence 35579999999999999999999999999999999999999999999998776543 34778999999999987 599
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... ... ..+++.++++.+++.++.++.+..
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (233)
T cd03258 100 FENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQ 140 (233)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhh
Confidence 9998521 111 245688999999998876665543
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.6e-18 Score=165.79 Aligned_cols=107 Identities=25% Similarity=0.280 Sum_probs=88.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.+++|++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++... ...++++++|+||++.+|.. ||++|+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~~~q~~~~~~~~tv~~~l 94 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIGIVFQDLSVDDELTGWENL 94 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEEEecCCccccccCcHHHHH
Confidence 4579999999999999999999999999999999999999999999987653 34567789999999988875 999998
Q ss_pred CCC----CC---CcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV----GE---SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .. ..++++.++++.+++.++.++.|.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 130 (220)
T cd03265 95 YIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK 130 (220)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChh
Confidence 521 11 124568899999999877665554
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-18 Score=176.97 Aligned_cols=107 Identities=25% Similarity=0.274 Sum_probs=91.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+++++|++++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...++. +++++||||++.+|+. ||++|+
T Consensus 20 l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~v~Q~~~lfp~~tv~eNi 97 (353)
T TIGR03265 20 LKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGIVFQSYALFPNLTVADNI 97 (353)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEEEeCCcccCCCCcHHHHH
Confidence 4579999999999999999999999999999999999999999999999876654 5789999999999975 999999
Q ss_pred CCCC---C----CcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---E----SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~----~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.- . ..++++.++++.++|.++.++.|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~ 134 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQ 134 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhh
Confidence 6321 1 1245699999999999887766654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.7e-18 Score=168.46 Aligned_cols=108 Identities=31% Similarity=0.376 Sum_probs=89.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCccccc-cchh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFS-GTLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~-~Tv~ 557 (602)
+.++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|+||++.+|. .||+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 97 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVL 97 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccccHH
Confidence 457999999999999999999999999999999999999999999999876653 345778999999998886 5999
Q ss_pred cccCCCC---------------CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPVG---------------ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~~---------------~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+.... ...++++.++++.+++.++.++.+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 144 (243)
T TIGR02315 98 ENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRAD 144 (243)
T ss_pred HHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcc
Confidence 9985310 1123468889999999876665443
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >KOG2355|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.3e-17 Score=148.82 Aligned_cols=199 Identities=19% Similarity=0.227 Sum_probs=125.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC-CChHHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~-~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
+.|.|+|+..+.+ ....+||.||||||||+|+|+|-.-...|.|.+.|.+.-. -+.. -.....|+--+=..
T Consensus 28 P~~~Dfnldlp~g-sRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~-~Sgdl~YLGgeW~~------ 99 (291)
T KOG2355|consen 28 PIFFDFNLDLPAG-SRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLE-SSGDLSYLGGEWSK------ 99 (291)
T ss_pred ceEEEEeeccCCC-ceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCcccccccc-ccCceeEecccccc------
Confidence 3455666666655 7799999999999999999999888888999999875422 0000 00011111110000
Q ss_pred CCceeEeeecccceeeeccccceeecccccc-cccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKP-LIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
...+ .+..-...++.. .++... .-..+ .+.++..+.++ . .+...-+.+|- |||+
T Consensus 100 --~~~~-------------agevplq~D~sae~mifgV--~g~dp-~Rre~LI~iLD---I--dl~WRmHkvSD--GqrR 154 (291)
T KOG2355|consen 100 --TVGI-------------AGEVPLQGDISAEHMIFGV--GGDDP-ERREKLIDILD---I--DLRWRMHKVSD--GQRR 154 (291)
T ss_pred --cccc-------------cccccccccccHHHHHhhc--cCCCh-hHhhhhhhhee---c--cceEEEeeccc--cchh
Confidence 0000 000000011100 000000 00001 11111111111 0 12334455664 9999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||.|+..|++.-++|+|||.|--||.-.+..+.+.++... .++||++.||-.+-+.. +++++.+.+|+++..-.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l~ 231 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNLK 231 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeeccc
Confidence 9999999999999999999999999999999999998764 47999999999999988 99999999999987433
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-18 Score=164.73 Aligned_cols=106 Identities=27% Similarity=0.415 Sum_probs=89.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++||++.+||+++|+|+||||||||+++|+|+++|++|+|.++|+++...+ ..++.++|+||+|.+|.+ |+++|+..
T Consensus 16 ~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~~~~~~t~~en~~~ 93 (213)
T TIGR01277 16 EFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGL 93 (213)
T ss_pred eeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEEeccCccCCCCcHHHHHHh
Confidence 699999999999999999999999999999999999999999999987543 356789999999998875 99999852
Q ss_pred C--C--C---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 563 V--G--E---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 563 ~--~--~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
. . . ..++++.++++.+++.+...+.|..|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 129 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQL 129 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccC
Confidence 1 1 1 13456888999999988777766543
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.1e-17 Score=154.73 Aligned_cols=73 Identities=18% Similarity=0.279 Sum_probs=65.7
Q ss_pred CCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEEeC
Q psy3001 348 VTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+| +|||||++|||++. .+|+++++|||+++||+.....+.+.+++..+ +.|+|++||+++.+..+|+++.+..
T Consensus 95 LS--~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 95 LS--GGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMFENADKLIGVLF 172 (178)
T ss_pred CC--HHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhhCCeEEEEEE
Confidence 55 69999999999996 69999999999999999999999999988644 5899999999998877999999875
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.73 E-value=4e-18 Score=165.42 Aligned_cols=104 Identities=25% Similarity=0.301 Sum_probs=86.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc---cccchh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL---FSGTLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l---f~~Tv~ 557 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++. ..+++++|+||+|.+ |..||+
T Consensus 14 ~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~ 88 (213)
T cd03235 14 VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVPQRRSIDRDFPISVR 88 (213)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEeccccccccCCCCcHH
Confidence 345799999999999999999999999999999999999999999998764 357789999999976 567999
Q ss_pred cccCCCCC-----------CcHHHHHHHHHHcCCCcccccccc
Q psy3001 558 LNLDPVGE-----------SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~~~-----------~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+|+..... ..++++.++++.+++.++.++.+.
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 131 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIG 131 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcc
Confidence 99853211 123568899999999876665554
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.5e-18 Score=167.80 Aligned_cols=109 Identities=27% Similarity=0.325 Sum_probs=89.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
.+.++||++.+||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.... +++++|+||+|.+|.+ ||++
T Consensus 15 ~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~~ 94 (236)
T cd03219 15 ALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPELTVLE 94 (236)
T ss_pred EecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEEEecccccccCCCHHH
Confidence 3457999999999999999999999999999999999999999999999887765544 5679999999999886 9999
Q ss_pred ccCCC----CC-------------CcHHHHHHHHHHcCCCcccccccc
Q psy3001 559 NLDPV----GE-------------SSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 559 nl~~~----~~-------------~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
|+... .. ...+++.++++.+++.+..++.+.
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 142 (236)
T cd03219 95 NVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAG 142 (236)
T ss_pred HHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChh
Confidence 98421 11 113457888999999776555443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 602 | ||||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 6e-23 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 3e-12 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 2e-22 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 3e-12 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 3e-22 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 2e-11 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 2e-21 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 4e-17 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-20 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-12 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 2e-20 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 8e-09 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-20 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 4e-12 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 2e-20 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 8e-09 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 2e-20 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 9e-09 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 3e-20 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-11 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-20 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 1e-08 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-20 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 7e-14 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 6e-20 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 8e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 4e-19 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 7e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 4e-19 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 7e-09 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 2e-18 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-08 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 2e-18 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 4e-08 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 1e-17 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-14 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 6e-17 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 4e-09 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-16 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 5e-10 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 5e-16 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 4e-15 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 2e-11 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-11 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-10 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-10 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-05 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 3e-09 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 9e-05 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 4e-09 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 4e-09 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 2e-08 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 1e-07 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 4e-07 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 5e-07 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 1e-06 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-06 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 3e-06 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-06 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 5e-06 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 6e-06 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 1e-05 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 2e-05 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-05 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-05 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 5e-05 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 6e-05 | ||
| 1g29_1 | 372 | Malk Length = 372 | 7e-05 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 7e-05 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 9e-05 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-04 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 3e-04 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 3e-04 |
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 312 bits (801), Expect = e-101
Identities = 76/285 (26%), Positives = 125/285 (43%), Gaps = 53/285 (18%)
Query: 185 NDKKPKDEWPEKGEVEFKDYKVRYREGLELV--------------GIVGRTGAGKSSLTL 230
+ K D WP G++ KD +Y EG + G++GRTG+GKS+L
Sbjct: 6 SHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLS 65
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290
A R++ +G I IDGV ++ L R ++P
Sbjct: 66 AFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFG----------------------VIP-- 100
Query: 291 VLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348
Q IF+ + + P S+ + + VA L+ + + P F
Sbjct: 101 ------QKVFIFSGTFR-KNLDPNAAHSDQEIWKVADEVGLR--SVIEQFPGKLDFVLVD 151
Query: 349 TGN---VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIA 405
G G +QL+CLAR++L K KIL+LDE +A +D T +I+ T++ FA CTV+
Sbjct: 152 GGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCE 211
Query: 406 HRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
R+ +++ D+ LV+++ V ++DS L A F + +
Sbjct: 212 ARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIGSP 256
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 201 bits (513), Expect = 4e-59
Identities = 43/108 (39%), Positives = 61/108 (56%), Gaps = 1/108 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
VG++GRTG+GKS+L A R++ +G I IDGV ++ L R +IPQ +FSG
Sbjct: 50 VGLLGRTGSGKSTLLSAFLRLLNT-EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSG 108
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T R NLDP SD+ IWK + L + + P +L + +GG L
Sbjct: 109 TFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 4e-27
Identities = 40/111 (36%), Positives = 69/111 (62%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V ++G TG+GKS+L + R+I+P G + +D +D+RT+ L LR ++ +PQ+ VLFSG
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ NL +++D+ I +A ++A ++ F+ +LP V GG N
Sbjct: 432 TIKENLKWGRE--DATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 3e-21
Identities = 29/85 (34%), Positives = 53/85 (62%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q + +ARAL++K K+LILD+ T+++D T+ I ++ CT I ++ T +
Sbjct: 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL 542
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKN 437
+D++LVL +G V F + L+++
Sbjct: 543 LADKILVLHEGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 77.2 bits (191), Expect = 5e-15
Identities = 29/116 (25%), Positives = 53/116 (45%), Gaps = 16/116 (13%)
Query: 166 VAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELV---------- 215
+ +R+ E + +G V F++ + RY E + V
Sbjct: 311 ASAKRVLEVLNE--KPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKP 368
Query: 216 ----GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++G TG+GKS+L + R+I+P G + +D +D+RT+ L LR ++ +PQ
Sbjct: 369 GSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQ 424
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 2e-26
Identities = 38/93 (40%), Positives = 60/93 (64%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARAL+ KILI DEAT+A+D E++ +I + TV+ IAHRL+T+
Sbjct: 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK 208
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
++DR++V++KG +VE L+ S++ +
Sbjct: 209 NADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 99.5 bits (249), Expect = 1e-23
Identities = 38/111 (34%), Positives = 61/111 (54%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ QD VL +
Sbjct: 38 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR 97
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ +P S E + A +LA + F+S L V E G L
Sbjct: 98 SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 146
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 73.7 bits (182), Expect = 7e-15
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 14/86 (16%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
++ F++ + RY+ E++GIVGR+G+GKS+LT + R P +G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++IDG D+ + LR ++ ++ Q
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQ 90
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 6e-26
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G +G GKS++ L R +P G I IDG I + L RS++ + QD + +G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NL G+ +DE +W+ L+LA +FV N+P +L EV E G +
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 35/75 (46%), Positives = 53/75 (70%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARA LR KIL+LDEATA++D E++ ++Q + S T L IAHRL+TI+
Sbjct: 143 GQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV 202
Query: 413 DSDRVLVLDKGLVVE 427
D+D++ ++KG +
Sbjct: 203 DADKIYFIEKGQITG 217
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-11
Identities = 18/55 (32%), Positives = 28/55 (50%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
++ G +G GKS++ L R +P G I IDG I + L RS++ + Q
Sbjct: 29 SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQ 83
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 6e-25
Identities = 37/95 (38%), Positives = 62/95 (65%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARAL+R KIL+LDEAT+A+D E++ ++Q+ + T + IAHRL+T+
Sbjct: 530 GQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D + D G++VE + LM+ K I++ +
Sbjct: 590 NADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 7e-25
Identities = 38/95 (40%), Positives = 61/95 (64%), Gaps = 1/95 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q I +ARAL+R+ IL+LDEAT+A+D E++ ++Q + T + IAHRL+TI
Sbjct: 1175 GQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ 1234
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++D ++V+ G V E + L+ K I++SM
Sbjct: 1235 NADLIVVIQNGKVKEHGTHQQLLAQK-GIYFSMVS 1268
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 7e-23
Identities = 35/111 (31%), Positives = 64/111 (57%), Gaps = 3/111 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG +G GKS++ L R +P G++ +DG +I+ L + LR++L I+ Q+P+LF
Sbjct: 1062 LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC 1121
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ D S E I +A + A+++ F+ +LP + V + G L
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQL 1172
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 4e-19
Identities = 39/110 (35%), Positives = 63/110 (57%), Gaps = 3/110 (2%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG +G GKS+ + R+ +P DG + IDG DIRT+ + LR + ++ Q+PVLF+
Sbjct: 419 VALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478
Query: 555 TLRLNLDPVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N+ G + + + I KA++ A+ F+ LP + V E G L
Sbjct: 479 TIAENIR-YGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQL 527
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 63.1 bits (154), Expect = 2e-10
Identities = 27/97 (27%), Positives = 46/97 (47%), Gaps = 15/97 (15%)
Query: 186 DKKPKDEWPEKGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTL 230
+ +G V+F Y R +GL L + +VG +G GKS++
Sbjct: 1018 STQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQ 1077
Query: 231 ALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
L R +P G++ +DG +I+ L + LR++L I+ Q
Sbjct: 1078 LLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQ 1114
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 59.7 bits (145), Expect = 2e-09
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 19/97 (19%)
Query: 196 KGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTLALFRIIEPAD 240
+G +EFK+ Y R +GL L V +VG +G GKS+ + R+ +P D
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--ATIF 273
G + IDG DIRT+ + LR + ++ Q VL TI
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIA 481
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 2e-04
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 4/68 (5%)
Query: 66 VLYLMPVTITVFFYGFV-ISLGTLFA---AKRLHEKLLKSMLRWSPLFFDTTPVGRVLSR 121
Y + V ++ +S L A ++ +K +++ +FD VG + +R
Sbjct: 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTR 170
Query: 122 FSSDVNTL 129
+ DV+ +
Sbjct: 171 LTDDVSKI 178
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 103 bits (258), Expect = 2e-24
Identities = 28/75 (37%), Positives = 54/75 (72%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G++Q + +AR +L+ I++LDEAT+A+D + IQ+++ A+ T + +AHRL+T++
Sbjct: 194 GEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVV 253
Query: 413 DSDRVLVLDKGLVVE 427
++D++LV+ G +VE
Sbjct: 254 NADQILVIKDGCIVE 268
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 5e-24
Identities = 36/115 (31%), Positives = 61/115 (53%), Gaps = 11/115 (9%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG +GAGKS++ LFR + + G I IDG DI + +LRS + ++PQD VLF+
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE------GGE 600
T+ N+ + ++ + A + A ++ + P + +V E GGE
Sbjct: 143 TIADNIRYGRV--TAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGE 195
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 7e-15
Identities = 33/133 (24%), Positives = 57/133 (42%), Gaps = 17/133 (12%)
Query: 149 QTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKK-PKDEWPEKGEVEFKDYKVR 207
+ + + +E + + + E V D +KG +EF++
Sbjct: 6 HHHHHSSGLVPRGSHMFIDMENMFDLLKEETE---VKDLPGAGPLRFQKGRIEFENVHFS 62
Query: 208 YREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 254
Y +G E + +VG +GAGKS++ LFR + + G I IDG DI +
Sbjct: 63 YADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVT 122
Query: 255 LHTLRSRLTIIPQ 267
+LRS + ++PQ
Sbjct: 123 QASLRSHIGVVPQ 135
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 101 bits (253), Expect = 3e-24
Identities = 34/86 (39%), Positives = 57/86 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
G+RQ I +AR LL+ KI+I DEAT+++D +T+ L Q + + T++ IAHRL+TI
Sbjct: 159 GERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS 218
Query: 413 DSDRVLVLDKGLVVEFDSPSVLMKNK 438
++ +++L+KG +VE + L+K
Sbjct: 219 SAESIILLNKGKIVEKGTHKDLLKLN 244
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 96.9 bits (242), Expect = 9e-23
Identities = 35/111 (31%), Positives = 61/111 (54%), Gaps = 6/111 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG TG+GKS++ L+R + +G I I G ++ +++RS + I+PQD +LF+
Sbjct: 49 CALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNE 107
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ +++DE + KA + A L F+ LP + V G L
Sbjct: 108 TIKYNILYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 64.9 bits (159), Expect = 7e-12
Identities = 22/87 (25%), Positives = 38/87 (43%), Gaps = 16/87 (18%)
Query: 196 KGEVEFKDYKVRYREGLEL---------------VGIVGRTGAGKSSLTLALFRIIEPAD 240
+EF D Y + +VG TG+GKS++ L+R + +
Sbjct: 15 GVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-E 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
G I I G ++ +++RS + I+PQ
Sbjct: 74 GDIKIGGKNVNKYNRNSIRSIIGIVPQ 100
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 6e-24
Identities = 33/75 (44%), Positives = 51/75 (68%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ+Q + +AR L ILILDEAT+A+DLE++ +IQ + T L +AHRL+TI
Sbjct: 481 GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT 540
Query: 413 DSDRVLVLDKGLVVE 427
+D+++V++ G +VE
Sbjct: 541 HADKIVVIENGHIVE 555
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 99.6 bits (249), Expect = 3e-22
Identities = 38/111 (34%), Positives = 64/111 (57%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V VG +G GKS+L + R + G I+IDG +I+ +LR+++ ++ QD +LFS
Sbjct: 370 VAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSD 429
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ P ++DE + +A ++A+ + F+ NLP EV E G L
Sbjct: 430 TVKENILLGRP--TATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 84.5 bits (210), Expect = 2e-17
Identities = 46/316 (14%), Positives = 101/316 (31%), Gaps = 76/316 (24%)
Query: 26 MSFFDTTPVGRMISRFSQDV----ETVDSNLPTFLRS------------WINCLFSVLYL 69
F+ VG++ISR DV + + + L +++ ++ L
Sbjct: 109 ARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAAL 168
Query: 70 MPVTITVFF-YGFVISLGTLFAAKR---------LHE----------------------- 96
+ Y F L L + LHE
Sbjct: 169 FIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDK 228
Query: 97 ---KLLKSMLRWSPLFFDTTPVGRVLSRFSSDV-------NTLDNKLTLSVQQT-LSQPF 145
L L+ + + ++ + + +T+ +
Sbjct: 229 KNTNFLTRALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLE 288
Query: 146 KITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYK 205
+ L LV + + + +++R+ + + + + N + ++G ++
Sbjct: 289 LLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK--NGVGAQPIEIKQGRIDIDHVS 346
Query: 206 VRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
+Y + E V VG +G GKS+L + R + G I+IDG +I+
Sbjct: 347 FQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIK 406
Query: 252 TLGLHTLRSRLTIIPQ 267
+LR+++ ++ Q
Sbjct: 407 DFLTGSLRNQIGLVQQ 422
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 44.9 bits (107), Expect = 6e-05
Identities = 19/150 (12%), Positives = 43/150 (28%), Gaps = 7/150 (4%)
Query: 11 KGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLM 70
+ ++ I+ + + I + L I + +
Sbjct: 14 YRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI- 72
Query: 71 PVTITVFFYGFVISLGTLFAAK---RLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVN 127
+ L + K + +KL + S F+ VG+V+SR +DV
Sbjct: 73 ---VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVE 129
Query: 128 TLDNKLTLSVQQTLSQPFKITQTLNWLVRM 157
+ + + I L+ + +
Sbjct: 130 QTKDFILTGLMNIWLDCITIIIALSIMFFL 159
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 1e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ + +ARALLR +LILDEAT+A+D E++ IQ+ + + TVL IAHRL+TI
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVE 427
+D +LV+D+G ++E
Sbjct: 544 QADEILVVDEGEIIE 558
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 5e-23
Identities = 37/110 (33%), Positives = 57/110 (51%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS++ R + G+I +DG D+R L LR ++ Q+ LF+
Sbjct: 372 VALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFND 431
Query: 555 TLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N GE + E I +A AH F+ N+P L + E G +L
Sbjct: 432 TIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 73.8 bits (182), Expect = 6e-14
Identities = 33/135 (24%), Positives = 58/135 (42%), Gaps = 18/135 (13%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L L +TS+ + + A + + + E + N K + GEV+ KD
Sbjct: 294 LMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD--NGKYEAE--RVNGEVDVKDVTF 349
Query: 207 RYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
Y+ + V +VGR+G+GKS++ R + G+I +DG D+R
Sbjct: 350 TYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRD 409
Query: 253 LGLHTLRSRLTIIPQ 267
L LR ++ Q
Sbjct: 410 YKLTNLRRHFALVSQ 424
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 3e-05
Identities = 14/93 (15%), Positives = 32/93 (34%), Gaps = 9/93 (9%)
Query: 64 FSVLYLMPVTITVFFY--GFVISLGTLFAA-------KRLHEKLLKSMLRWSPLFFDTTP 114
+ L ++P I + G + + ++ +L + FFD
Sbjct: 61 SNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQES 120
Query: 115 VGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKI 147
G +LSR + D + + ++ + + I
Sbjct: 121 TGGLLSRITYDSEQVAGATSRALVSIVREGASI 153
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 103 bits (260), Expect = 2e-23
Identities = 34/110 (30%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ ++ Q+ LF+
Sbjct: 372 VALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFND 431
Query: 555 TLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+ N E S E I +A +A+ F++ + L + E G L
Sbjct: 432 TVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 2e-23
Identities = 38/75 (50%), Positives = 55/75 (73%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQ I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 413 DSDRVLVLDKGLVVE 427
+D ++V++ G++VE
Sbjct: 544 QADEIVVVEDGIIVE 558
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 5e-14
Identities = 29/135 (21%), Positives = 63/135 (46%), Gaps = 18/135 (13%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
+ + L L + + + + A + + ++ QE D+ + G++EF++
Sbjct: 294 LMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEK----DEGKRVIDRATGDLEFRNVTF 349
Query: 207 RYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252
Y + V +VGR+G+GKS++ + R + +G I++DG D+R
Sbjct: 350 TYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLRE 409
Query: 253 LGLHTLRSRLTIIPQ 267
L +LR+++ ++ Q
Sbjct: 410 YTLASLRNQVALVSQ 424
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 2e-05
Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 18/112 (16%)
Query: 52 LPTFLRSWINCLF-----SVLYLMPVTITVFFYGFVISLGTLFAA-----------KRLH 95
+ + L+ ++ F SVL MP+ + + + + ++ +
Sbjct: 44 MLSLLKPLLDDGFGKTDRSVLLWMPLVVIGLM--ILRGITSYISSYCISWVSGKVVMTMR 101
Query: 96 EKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLSQPFKI 147
+L M+ FFD G +LSR + D + + + ++ + + I
Sbjct: 102 RRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASI 153
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 41.8 bits (99), Expect = 6e-04
Identities = 16/86 (18%), Positives = 37/86 (43%), Gaps = 8/86 (9%)
Query: 17 VLRNILHSCMSFFDTTPVGRMISRFSQDVETVD----SNLPTFLRSWINCLFSVLYLM-- 70
+ +++ ++FFD G ++SR + D E V L T +R + + + +
Sbjct: 104 LFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYY 163
Query: 71 --PVTITVFFYGFVISLGTLFAAKRL 94
++I + ++S+ +KR
Sbjct: 164 SWQLSIILVVLAPIVSIAIRVVSKRF 189
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 99.1 bits (248), Expect = 2e-23
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 3/97 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI--RSEFAHCTVLTIAHRLNT 410
GQRQ + LARAL+RK ++LILD AT+A+D +Q + E+A TVL I +L+
Sbjct: 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSL 219
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
+ +L L +G V E + LM+ + SM +
Sbjct: 220 AERAHHILFLKEGSVCEQGTHLQLMERG-GCYRSMVE 255
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 89.9 bits (224), Expect = 3e-20
Identities = 29/110 (26%), Positives = 51/110 (46%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG G+GKS++ L + +P G +++DG + H L +++ + Q+P+LF
Sbjct: 48 TALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGR 107
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ R N+ + E I + + F+S P EV E G L
Sbjct: 108 SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 61.8 bits (151), Expect = 8e-11
Identities = 23/97 (23%), Positives = 42/97 (43%), Gaps = 19/97 (19%)
Query: 196 KGEVEFKDYKVRY--R------EGLEL-------VGIVGRTGAGKSSLTLALFRIIEPAD 240
KG V+F+D Y +GL +VG G+GKS++ L + +P
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 241 GTIIIDGVDIRTLGLHTLRSRLTIIPQ--VL--ATIF 273
G +++DG + H L +++ + Q +L +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFR 110
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 97.2 bits (243), Expect = 2e-21
Identities = 36/75 (48%), Positives = 50/75 (66%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQRQL+ + RA L KILILDEAT+ +D +T+ IQ+ + T + IAHRLNTI
Sbjct: 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIK 554
Query: 413 DSDRVLVLDKGLVVE 427
++D ++VL G +VE
Sbjct: 555 NADLIIVLRDGEIVE 569
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 92.2 bits (230), Expect = 8e-20
Identities = 41/111 (36%), Positives = 70/111 (63%), Gaps = 5/111 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V +VG TG+GK+++ L R + G I++DG+DIR + +LRS + I+ QD +LFS
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 555 TLRLNL---DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ NL +P ++DE I +A +L H + F+ +LP + +++ GE+L
Sbjct: 444 TVKENLKYGNP--GATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 2e-14
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 16/134 (11%)
Query: 147 ITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKV 206
T+ LN L + ++ + + ERI E + +E +D + +GE+EFK+
Sbjct: 306 FTRPLNELSNQFNMIQMALASAERIFEILDLEEE---KDDPDAVELREVRGEIEFKNVWF 362
Query: 207 RYREGLEL-------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
Y + + V +VG TG+GK+++ L R + G I++DG+DIR +
Sbjct: 363 SYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKI 422
Query: 254 GLHTLRSRLTIIPQ 267
+LRS + I+ Q
Sbjct: 423 KRSSLRSSIGIVLQ 436
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 46.0 bits (110), Expect = 3e-05
Identities = 21/93 (22%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
Query: 59 WINCLFSVLYLMPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLRWSPLFFDTTPVGRV 118
+ +Y + + + G ++ + RL ++L + + R FFD TP G +
Sbjct: 78 RYMLILGTIYALTS-LLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDI 136
Query: 119 LSRFSSDVNTLDNKLTLSVQQTLSQPFKITQTL 151
+SR +DV+ ++N L S+ Q S + +
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAV 169
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 95.9 bits (239), Expect = 6e-21
Identities = 60/409 (14%), Positives = 127/409 (31%), Gaps = 61/409 (14%)
Query: 197 GEVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
FK +++ R G +++G+VG G GKS+ L +P G +
Sbjct: 88 SANSFKLHRLPTPRPG-QVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKY 146
Query: 256 HTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC 315
++L + Q +K +
Sbjct: 147 FRGSELQNYFTKMLED--------DIKAI---------IKPQYVDNIPRAIKGPVQKVGE 189
Query: 316 SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDE 375
R + + ++ + + E ++G G+ Q + + +++ + + DE
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQLENVLKRDIEKLSG--GELQRFAIGMSCVQEADVYMFDE 247
Query: 376 ATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
++ +D++ IRS V+ + H L+ + SD V ++ V V
Sbjct: 248 PSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY---GVV 304
Query: 434 LMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYAM 493
+ ++ D + +R T L A L ++ + S+
Sbjct: 305 TLPASVREGINIFLDGHIPAENLRFRTE-ALQFRIADATEDLQNDSASRAFSYPSLKKTQ 363
Query: 494 Q----------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT 537
+ ++G G GK++L L ++P +G I L +
Sbjct: 364 GDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDIPK------LNVSM 417
Query: 538 LRSRLTIIPQDPV--LFSGTLRLNLDPVGESSDEAIW----KALELAHL 580
++ V LF +R G+ + K L + +
Sbjct: 418 KPQKIAPKFPGTVRQLFFKKIR------GQFLNPQFQTDVVKPLRIDDI 460
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 43/262 (16%), Positives = 85/262 (32%), Gaps = 52/262 (19%)
Query: 169 ERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
RI + E Q +G+ + + + E++ ++G G GK++L
Sbjct: 336 FRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDS-EILVMMGENGTGKTTL 394
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288
L ++P +G I +++ PQ P F
Sbjct: 395 IKLLAGALKPDEGQDIPKL-------------NVSMKPQ---------KIAPKFPGT--- 429
Query: 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348
V +F + ++ + P Q ++ + I + +
Sbjct: 430 ---------VRQLFFKKIRGQFLNP------------QFQTDVVKPLRIDDIIDQEVQHL 468
Query: 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAH 406
+G G+ Q + + AL I ++DE +A +D E + IR H T + H
Sbjct: 469 SG--GELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEH 526
Query: 407 RLNTIID-SDRVLVLDKGLVVE 427
+D+V+V +
Sbjct: 527 DFIMATYLADKVIVFEGIPSKN 548
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 19/125 (15%), Positives = 41/125 (32%), Gaps = 23/125 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTI-----------IIDGVDIRTLGLHTLRSRLT 543
+G+VG G GKS+ L +P G G +++ L +
Sbjct: 106 LGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIK 165
Query: 544 IIPQDPVLF------SGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE 597
I + + G ++ + + +++ + L L+ ++ +
Sbjct: 166 AIIKPQYVDNIPRAIKGPVQKVGELLKLRMEKSPEDVKRYIKIL----QLENVLKRDIEK 221
Query: 598 --GGE 600
GGE
Sbjct: 222 LSGGE 226
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 2e-19
Identities = 61/426 (14%), Positives = 147/426 (34%), Gaps = 67/426 (15%)
Query: 197 GEVEFKDYKVR-YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255
FK + + + ++G++G+ G GK+++ L I P G + +
Sbjct: 10 KVNGFKLFGLPTPKNN-TILGVLGKNGVGKTTVLKILAGEIIPNFG-----DPNSKVGKD 63
Query: 256 HTLRS-RLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF 314
L+ R I F YS + I V I + +
Sbjct: 64 EVLKRFRGKEI----YNYFKELYSNELKI--------------VHKIQYVEYASKFLKGT 105
Query: 315 CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374
+ + ++ + E ++ + +++ ++G G Q + +A +LLR+ + I D
Sbjct: 106 VNEILTKIDERGKKDEVKELLNMTNLWNKDANILSG--GGLQRLLVAASLLREADVYIFD 163
Query: 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433
+ ++ +D+ + IR + V+ + H L + +D + ++ V
Sbjct: 164 QPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKS 223
Query: 434 L-MKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGLVGLSVSYA 492
+ + F A + +R + + ++ + L + +
Sbjct: 224 YAARVGINNFLKGYLPA--ENMKIRPDEIKFMLK-EVSDLDLSKDLKTKMKWTKIIKKLG 280
Query: 493 MQ--------------VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
+GI+G G GK++ L I +G++ + +
Sbjct: 281 DFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS------Y 334
Query: 539 RSRLTIIPQDPVLFSGTLRLNL-DPVGES---SDEAIWKALELAHLNTFVSNLPARLQHE 594
+ + I + GT++ L + ++ S + + +L+ + + ++
Sbjct: 335 KPQ--RIFPNY---DGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNV----ND 385
Query: 595 VSEGGE 600
+S GGE
Sbjct: 386 LS-GGE 390
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 78.9 bits (195), Expect = 1e-15
Identities = 52/317 (16%), Positives = 110/317 (34%), Gaps = 58/317 (18%)
Query: 136 SVQQTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE 195
SV +S+ + +N ++ E + + IK + + + D K K +W +
Sbjct: 215 SVYGRVSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTK 274
Query: 196 ----KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251
G+ + +EG E++GI+G G GK++ L I +G++ + +
Sbjct: 275 IIKKLGDFQLVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILS 333
Query: 252 TLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII 311
PQ IF + V K +
Sbjct: 334 YK------------PQ---RIFP------------------NYDGTVQQYLENASKDALS 360
Query: 312 TPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF-GETVTGNVGQRQLICLARALLRKTKI 370
T F+ +++L + + + G G+ Q + +A L ++ +
Sbjct: 361 TS-----SWFFEEVTKRLNLHRLLESNV--NDLSG-------GELQKLYIAATLAKEADL 406
Query: 371 LILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIID--SDRVLVLDKGLVV 426
+LD+ ++ +D+E ++ I+ + I H L+ I D +DR++V
Sbjct: 407 YVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEK 465
Query: 427 EFDSPSVLMKNKASIFY 443
+ S + +
Sbjct: 466 AGLATSPVTLKTGMNEF 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 6e-19
Identities = 67/356 (18%), Positives = 116/356 (32%), Gaps = 65/356 (18%)
Query: 197 GEVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVD 249
G F Y++ +EG +VGIVG G GKS+ L + P +I
Sbjct: 32 GVNAFVLYRLPVVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFR 90
Query: 250 IRTLGLHTLRSR---LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV 306
L + + + + + + V LI
Sbjct: 91 GNELQNYFEKLKNGEIRPVVK-----------PQ----------------YVDLI----- 118
Query: 307 KPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366
P + L + T + + ++++ + + ++G G+ Q + +A ALLR
Sbjct: 119 -PKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHLSG--GELQRVAIAAALLR 175
Query: 367 KTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKG 423
DE ++ +D+ IR E +VL + H L + SD + V+
Sbjct: 176 NATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHDLAVLDYLSDIIHVVYGE 234
Query: 424 LVVE--FDSPSVLMKNKASIFYSM----------AKDAGLAWLAVRLETVGNLITFSAAL 471
V F P +N + F + R+E + L
Sbjct: 235 PGVYGIFSQPKGT-RNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRL 293
Query: 472 LAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ L + +GIVG G GK++ L + EP +G I D
Sbjct: 294 VKDYGSFRLEV--EPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL 347
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 1e-08
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 9/81 (11%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLE----TDDLIQSTIRSEFAHCTVLTIAHRL 408
G+ Q + +A LLR I +LDE +A +D+E I+ + T L + H +
Sbjct: 405 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEK--NEKTALVVEHDV 462
Query: 409 NTIID--SDRVLVLDKGLVVE 427
+ID SDR++V +
Sbjct: 463 -LMIDYVSDRLMVFEGEPGKY 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 44.6 bits (106), Expect = 7e-05
Identities = 27/123 (21%), Positives = 43/123 (34%), Gaps = 26/123 (21%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVDIRTLGLHTLRSR---LTII 545
VGIVG G GKS+ L + P +I L + + + + +
Sbjct: 50 VGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPV 109
Query: 546 PQ------DPVLFSGTLRLNLDPVGESSD-EAIWKALELAHL-NTFVSNLPARLQHEVSE 597
+ P G + L E+ E + KALEL ++ + +S
Sbjct: 110 VKPQYVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREI--------QHLS- 160
Query: 598 GGE 600
GGE
Sbjct: 161 GGE 163
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 3e-04
Identities = 18/75 (24%), Positives = 31/75 (41%), Gaps = 5/75 (6%)
Query: 177 TPQEAEWVNDKKPKDEWPE----KGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLAL 232
T +++ +P G + ++G E++GIVG G GK++ L
Sbjct: 274 TKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGEIKKG-EVIGIVGPNGIGKTTFVKML 332
Query: 233 FRIIEPADGTIIIDG 247
+ EP +G I D
Sbjct: 333 AGVEEPTEGKIEWDL 347
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 89.3 bits (222), Expect = 7e-19
Identities = 64/354 (18%), Positives = 114/354 (32%), Gaps = 61/354 (17%)
Query: 197 GEVEFKDYKVRY-REGLELVGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVD 249
G F Y++ ++G +VGIVG G GK++ L + P +I
Sbjct: 102 GVNAFVLYRLPIVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFR 160
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
L + R + I V+ +V D+ P
Sbjct: 161 GNELQNYFERLKNGEIRPVVKPQYV------------------------------DLLPK 190
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTK 369
+ L + + + ++ + + ++G G+ Q + +A ALLRK
Sbjct: 191 AVKGKVRELLKKVDEVGKFEEVVKELELENVLDRELHQLSG--GELQRVAIAAALLRKAH 248
Query: 370 ILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIID--SDRVLVLDKGLV 425
DE ++ +D+ + IR A+ VL + H L ++D SD + V+
Sbjct: 249 FYFFDEPSSYLDIRQRLKVARVIR-RLANEGKAVLVVEHDLA-VLDYLSDVIHVVYGEPG 306
Query: 426 VEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNAGL- 484
V + L VR T + + V + +
Sbjct: 307 VY---GIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRL 363
Query: 485 -----------VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527
+ +GIVG G GK++ L + EP +G + D
Sbjct: 364 VKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 2e-08
Identities = 25/79 (31%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
G+ Q + +A LLR I +LDE +A +D+E + IR E T L + H +
Sbjct: 475 GELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV-L 533
Query: 411 IID--SDRVLVLDKGLVVE 427
+ID SDR++V +
Sbjct: 534 MIDYVSDRLIVFEGEPGRH 552
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 21/100 (21%), Positives = 36/100 (36%), Gaps = 11/100 (11%)
Query: 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVR 207
+ N R T + ++ E+ K G + +
Sbjct: 329 LKDENVRFRPYEIRFTKLSERVDVERE----TLVEYPRLVKDY------GSFKLEVEPGE 378
Query: 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
R+G E++GIVG G GK++ L + EP +G + D
Sbjct: 379 IRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWDL 417
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 25/121 (20%), Positives = 41/121 (33%), Gaps = 22/121 (18%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEP------ADGTIIIDGVDIRTLGLHTLRSR---LTII 545
VGIVG G GK++ L + P +I L + R + + +
Sbjct: 120 VGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 546 PQ------DPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGG 599
+ P G +R L V E + ++ L + H++S GG
Sbjct: 180 VKPQYVDLLPKAVKGKVRELLKKVDE--VGKFEEVVKELELENVLDREL----HQLS-GG 232
Query: 600 E 600
E
Sbjct: 233 E 233
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 78.8 bits (195), Expect = 2e-16
Identities = 44/273 (16%), Positives = 92/273 (33%), Gaps = 58/273 (21%)
Query: 199 VEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
++ +G + + G GAGK++L L GT+ +
Sbjct: 22 IQLDQIGRMKQGKTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNL 80
Query: 246 DGVDIRTLG--LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
G +G T+R + + L
Sbjct: 81 FGKMPGKVGYSAETVRQHIGFVSHSL---------------------------LEKFQEG 113
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKR----LESVSRSPIYSHFGETVTGNV--GQRQL 357
E V ++I+ ++ + L+ V S + G + G++Q
Sbjct: 114 ERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVG----MSAKAQQYIGYLSTGEKQR 169
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLNTIIDS 414
+ +ARAL+ + ++LILDE A +D + + S + + ++ + H + I +
Sbjct: 170 VMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITAN 229
Query: 415 -DRVLVLDKGLVVEFDSPS-VLMKNKASIFYSM 445
++L+L G ++ + +L S F+
Sbjct: 230 FSKILLLKDGQSIQQGAVEDILTSENMSRFFQK 262
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 8e-13
Identities = 41/216 (18%), Positives = 76/216 (35%), Gaps = 44/216 (20%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+V G G GK++L + ++P G II +GV I ++ ++ +P+ +
Sbjct: 36 NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEII-- 88
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ I V + +K ++L V + + L
Sbjct: 89 -------------------VPRKISVE----DYLK------AVASLYGVKVNKNEIMDAL 119
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
ESV + GE G + + LA LL +I +LD+ AID ++ + +I
Sbjct: 120 ESVEVLDLKKKLGELSQG---TIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176
Query: 393 RSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426
+++ L+ D L K
Sbjct: 177 LEILKEKGIVIISSREELSYC---DVNENLHKYSTK 209
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V G G GK++L + ++P G II +GV I ++ ++ +P++ ++
Sbjct: 38 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRK 92
Query: 555 -TLRLNLDPVGE-----SSDEAIWKALELAHL 580
++ L V + I ALE +
Sbjct: 93 ISVEDYLKAVASLYGVKVNKNEIMDALESVEV 124
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 6e-11
Identities = 26/76 (34%), Positives = 49/76 (64%), Gaps = 3/76 (3%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNT 410
GQRQLI +ARA+ + K+++LDE T+A+DL D++ S + ++ + TV+ H+ N
Sbjct: 132 GQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQ 191
Query: 411 IID-SDRVLVLDKGLV 425
++ +++ L+L+K
Sbjct: 192 VVAIANKTLLLNKQNF 207
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 60.0 bits (146), Expect = 4e-10
Identities = 22/100 (22%), Positives = 44/100 (44%), Gaps = 12/100 (12%)
Query: 158 TSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL----- 212
T++V V + +GE ++A+ + + + F ++ + L
Sbjct: 2 TTEVVMENVTAFWEEGFGELFEKAKQ--NNNNRKTSNGDDSLSFSNFSLLGTPVLKDINF 59
Query: 213 -----ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
+L+ + G TGAGK+SL + + +EP++G I G
Sbjct: 60 KIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG 99
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 3e-08
Identities = 28/117 (23%), Positives = 50/117 (42%), Gaps = 16/117 (13%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
+ + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 59 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 105
Query: 547 QDPVLFSGTLRLNLDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q+ + GT++ N+ +G S DE ++ L +S + + EGG L
Sbjct: 106 QNSWIMPGTIKENI--IGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 3e-07
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQR I LARA+ + + +LD +D+ T ++ +S + A+ T + + ++ +
Sbjct: 163 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 222
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D++L+L +G + + S L +
Sbjct: 223 KKADKILILHEGSSYFYGTFSELQNLR 249
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 18/90 (20%), Positives = 36/90 (40%), Gaps = 4/90 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
GQ L+ + AL + +I+ LDE +D +I I+ + + H L+ +
Sbjct: 132 GQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEY--GKEGILVTHELDMLN 189
Query: 413 D-SDRVLVLDKGLVVE-FDSPSVLMKNKAS 440
+ G ++ S S L+++
Sbjct: 190 LYKEYKAYFLVGNRLQGPISVSELLESSIV 219
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 4e-04
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 7/44 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRII---EPADGTIIIDGVDIRTL 253
E V I+G G+GK++L R I P G I I+G+++R +
Sbjct: 31 EKVIILGPNGSGKTTL----LRAISGLLPYSGNIFINGMEVRKI 70
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 56.4 bits (135), Expect = 2e-08
Identities = 77/435 (17%), Positives = 137/435 (31%), Gaps = 130/435 (29%)
Query: 111 DTTPVGRVLSRFSSDVNTLD----NKLTLS---VQQTLSQPFKITQT--LNWLVRMTSDV 161
D V F + + D K LS + + ++ T L W +
Sbjct: 20 DILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLL---SK 74
Query: 162 ETNIVA--VERI--KEYG--ETPQEAEWVNDKKPKDEWPEKGEV------EFKDYKV--- 206
+ +V VE + Y +P + E + E+ + F Y V
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134
Query: 207 ----RYREGL-EL-----VGIVGRTGAGKSSLTLAL---FRIIEPADGTII-IDGVDIRT 252
+ R+ L EL V I G G+GK+ + L + +++ D I +
Sbjct: 135 QPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWL------N 188
Query: 253 LG-LHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLII 311
L ++ + L ++ Q L +++ + + ++
Sbjct: 189 LKNCNSPETVLEML-QKLLYQIDPNWTSRSDHSSNIKLR------------IHSIQ---- 231
Query: 312 TPFCSNLQRFYVATSRQLKR----LESVSRSPIYSHFGETVTGNVGQRQLICLARALLRK 367
+ L+R S+ + L +V + ++ F N+ C
Sbjct: 232 ----AELRRLL--KSKPYENCLLVLLNVQNAKAWNAF------NLS-----C-------- 266
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
KIL+ T + TD L +T T +++ H T+ + +L K L
Sbjct: 267 -KILLT---TRFKQV-TDFLSAATT-------THISLDHHSMTLTPDEVKSLLLKYLDCR 314
Query: 428 FD---------SPSVLMKNKASIFYSMAKDAGLA----WLAVRLETVGNLITFSAALLAV 474
+P L SI +D GLA W V + + +I S L V
Sbjct: 315 PQDLPREVLTTNPRRL-----SIIAESIRD-GLATWDNWKHVNCDKLTTIIESS---LNV 365
Query: 475 LSKETLNAGLVGLSV 489
L LSV
Sbjct: 366 LEPAEYRKMFDRLSV 380
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.1 bits (116), Expect = 4e-06
Identities = 79/490 (16%), Positives = 138/490 (28%), Gaps = 125/490 (25%)
Query: 13 LHLVVLRNI-LHSCMSF--FDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYL 69
+ L V + + M F F + ETV L L I+ ++
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLN-LKN-----CNSPETVLEMLQKLLYQ-IDPNWTSRSD 218
Query: 70 MPVTITVFFYGFVISLGTLFAAKRLHEKLLKSMLR--WSPLFFDTTPVG-RVL--SRFSS 124
I + + L L +K LL +L + ++ + ++L +RF
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLL--VLLNVQNAKAWNAFNLSCKILLTTRFKQ 276
Query: 125 DVNTLDNKLTLSV-QQTLSQPFKITQTL----NWLVRMTSD-----VETNIVAV----ER 170
+ L T + S + +L D + TN + E
Sbjct: 277 VTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAES 336
Query: 171 IKEYGETPQEAEWVNDKKPKDEWPEKG--EVEFKDYKVRYREGLELVGIVGRTGAGKSSL 228
I++ T + VN K E +E +Y+ +
Sbjct: 337 IRDGLATWDNWKHVNCDK-LTTIIESSLNVLEPAEYRKMFDR------------------ 377
Query: 229 TLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QVLATIFVICYSTPVFIFVIV 287
L++F I P +L+ I+
Sbjct: 378 -LSVFP-----------PSAHI---------------PTILLSLIW--FDVIK-----SD 403
Query: 288 PVSVLYFFIQVSLIFTEDVKPLIIT---------PFCSN---LQRFYVATSRQLKRLESV 335
+ V+ + SL+ + K I+ N L R V K +S
Sbjct: 404 VMVVVNKLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 336 SRSP------IYSHFGETVTGNVGQRQLICLARAL---LR--KTKILILDEATAAIDLET 384
P YSH G + N+ + + L R + R + KI A A
Sbjct: 463 DLIPPYLDQYFYSHIGHHLK-NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSIL 521
Query: 385 DDLIQSTIRSEF--AHCTVLTIAHRLNTIID----SDRVLVLDKGL-VVEFDSPSVLMKN 437
+ L Q + + +N I+D + L+ K ++ LM
Sbjct: 522 NTLQQLKFYKPYICDNDPKYE--RLVNAILDFLPKIEENLICSKYTDLLRI----ALMAE 575
Query: 438 KASIFYSMAK 447
+IF K
Sbjct: 576 DEAIFEEAHK 585
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 48.7 bits (115), Expect = 5e-06
Identities = 48/290 (16%), Positives = 84/290 (28%), Gaps = 98/290 (33%)
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDL---ETDDLIQSTIRS-EFAHCTVLTIAH 406
G+ Q IL + E + + D+ +S + E H ++
Sbjct: 10 ETGEHQYQY--------KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDH--IIMSKD 59
Query: 407 RLNTIIDSDRVL--VLDKG--LVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETV- 461
++ + R+ +L K +V +F VL N Y +L ++T
Sbjct: 60 AVSG---TLRLFWTLLSKQEEMVQKF-VEEVLRIN-----YK--------FLMSPIKTEQ 102
Query: 462 ----GNLITFSAAL------LAVLSK---------ETLNAGLVGLSVSYAMQVGIVGRTG 502
+ V +K L L+ L A V I G G
Sbjct: 103 RQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP--AKNVLIDGVLG 160
Query: 503 AGKSSLTLA-----------------------------------LFRIIEPADGTIIIDG 527
+GK+ + L L I+P + T D
Sbjct: 161 SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP-NWTSRSDH 219
Query: 528 VDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALEL 577
L +H++++ L + + + L L L V + W A L
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKP-YENCL-LVLLNV---QNAKAWNAFNL 264
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 5e-05
Identities = 59/466 (12%), Positives = 139/466 (29%), Gaps = 107/466 (22%)
Query: 30 DTTPVGRMISRFSQDVETVDSNLPTFLRSWI-NCLFSVLYLMPVTITVFFYGFVISLGTL 88
D V F + + D + +S + + + ++ F L
Sbjct: 20 DILSV--FEDAFVDNFDCKD--VQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWT---LL 72
Query: 89 FAAKRLHEKLLKSMLR------WSPLFFDTTPVGRVLSRFSSDVNTLDNKLTLSVQQTLS 142
+ + +K ++ +LR SP+ + + + + L N + + +S
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 143 QPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFK 202
+ + L+ + N++ ++ + G+T + K + + FK
Sbjct: 133 RLQPYLKLRQALLELRP--AKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMD------FK 183
Query: 203 DYKVRYREGLELVGIVGRTGAGKSSLTL--ALFRIIEPADGTIIIDGVDIRTLGLHTLRS 260
+ + + + ++ L + L I+P + T D L +H++++
Sbjct: 184 IFWLN----------LKNCNSPETVLEMLQKLLYQIDP-NWTSRSDHSSNIKLRIHSIQA 232
Query: 261 RLT------------II------PQVLAT------IFVICYSTPVFIFVIVPVSVLYFFI 296
L ++ + I + V F+ +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLD 292
Query: 297 QVSLIFTED-VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355
S+ T D VK L++ Y+ Q E ++ +P
Sbjct: 293 HHSMTLTPDEVKSLLLK---------YLDCRPQDLPREVLTTNP---------------- 327
Query: 356 QLICLARALLRKTKILI-------LDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRL 408
+ + + +R D+ T I+ + L + R F +V
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF----PP 383
Query: 409 NTIIDSDRVLVL---------DKGLVVEFDSPSVLMKNKASIFYSM 445
+ I + +L L +V + S++ K S+
Sbjct: 384 SAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI 428
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 24/88 (27%), Positives = 45/88 (51%), Gaps = 4/88 (4%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
G+++ + +A ++ + ILILDE +D E + + TV+ I+H + T
Sbjct: 142 GEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGK-TVILISHDIET 200
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKN 437
+I+ DRV+VL+KG V + ++
Sbjct: 201 VINHVDRVVVLEKGKKVFDGTRMEFLEK 228
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549
+ + G TG+GKS+L + +IEP G ++ DG + + +R + I Q P
Sbjct: 36 LLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEIRRNIGIAFQYP 87
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 46.4 bits (111), Expect = 1e-05
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261
E + + G TG+GKS+L + +IEP G ++ DG + + +R
Sbjct: 34 ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKK---GYEIRRN 79
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 54.5 bits (132), Expect = 2e-08
Identities = 25/102 (24%), Positives = 46/102 (45%), Gaps = 8/102 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNT 410
GQ++ + +A L+ + K+LILDE TA +D I + + T++ H ++
Sbjct: 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDI 206
Query: 411 IID-SDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAGL 451
+ D V V+ +G V+ +P + K I + L
Sbjct: 207 VPLYCDNVFVMKEGRVILQGNPKEVFAEKEVI-----RKVNL 243
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 52.9 bits (128), Expect = 8e-08
Identities = 29/111 (26%), Positives = 45/111 (40%), Gaps = 17/111 (15%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDPV-- 550
I+G G GKS+L I++P+ G I+ D I G+ LR + I+ QDP
Sbjct: 37 TAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQ 96
Query: 551 LFSGTLR-------LNLDPVGESSDEA---IWKALELAHLNTFVSNLPARL 591
LFS ++ +N+ DE + AL+ + L
Sbjct: 97 LFSASVYQDVSFGAVNM---KLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 47.5 bits (114), Expect = 5e-06
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSR 261
E+ I+G G GKS+L I++P+ G I+ D I G+ LR
Sbjct: 35 EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRES 85
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 4e-08
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETD----DLIQSTIRSEFAHCTVLTIAHRL 408
GQ+Q + +ARAL K+L+ D+AT+A+D T +L++ I T+L I H +
Sbjct: 167 GQKQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKD-INRRL-GLTILLITHEM 224
Query: 409 NTIID-SDRVLVLDKGLVVE 427
+ + D V V+ G ++E
Sbjct: 225 DVVKRICDCVAVISNGELIE 244
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 7e-06
Identities = 18/58 (31%), Positives = 36/58 (62%), Gaps = 3/58 (5%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 267
++ G++G +GAGKS+L + + P +G++++DG ++ TL L R ++ +I Q
Sbjct: 55 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 1e-05
Identities = 18/55 (32%), Positives = 34/55 (61%), Gaps = 3/55 (5%)
Query: 496 GIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL---GLHTLRSRLTIIPQ 547
G++G +GAGKS+L + + P +G++++DG ++ TL L R ++ +I Q
Sbjct: 58 GVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ 112
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 52.2 bits (126), Expect = 1e-07
Identities = 21/95 (22%), Positives = 43/95 (45%), Gaps = 16/95 (16%)
Query: 353 GQRQLICLARALLRKT-------KILILDEATAAIDL----ETDDLIQSTIRSEFAHCTV 401
G+ Q + LA +L+ T ++L+LDE ++D+ D ++ + + +
Sbjct: 130 GEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQ---QGLAI 186
Query: 402 LTIAHRLN-TIIDSDRVLVLDKGLVVEFDSPS-VL 434
+ +H LN T+ + R +L G ++ VL
Sbjct: 187 VMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 51.8 bits (125), Expect = 2e-07
Identities = 22/111 (19%), Positives = 38/111 (34%), Gaps = 13/111 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ +VG GAGKS+L + + G+I G + L + Q
Sbjct: 29 LHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 87
Query: 555 -----TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGE 600
L L+ ++ E + L + R +++S GGE
Sbjct: 88 TPVWHYLTLHQHD--KTRTELLNDVAGALAL----DDKLGRSTNQLS-GGE 131
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 47.9 bits (115), Expect = 3e-06
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
E++ +VG GAGKS+L + + G+I G + L + Q
Sbjct: 27 EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQ 80
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 28/118 (23%), Positives = 48/118 (40%), Gaps = 17/118 (14%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
+ + + G TGAGK+SL + + +EP++G I G R++
Sbjct: 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCS 75
Query: 547 QDPVLFSGTLRLN-LDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q + GT++ N + G S DE ++ L +S + + EGG L
Sbjct: 76 QFSWIMPGTIKENII--FGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.9 bits (120), Expect = 6e-07
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 1/87 (1%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEFAHCTVLTIAHRLNTI 411
GQR I LARA+ + + +LD +D+ T ++ +S + A+ T + + ++ +
Sbjct: 134 GQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHL 193
Query: 412 IDSDRVLVLDKGLVVEFDSPSVLMKNK 438
+D++L+L +G + + S L +
Sbjct: 194 KKADKILILHEGSSYFYGTFSELQNLQ 220
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 8e-07
Identities = 18/66 (27%), Positives = 30/66 (45%), Gaps = 14/66 (21%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
EV ++ + EG +L+ + G TGAGK+SL + + +EP++G
Sbjct: 4 TTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 242 TIIIDG 247
I G
Sbjct: 64 KIKHSG 69
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 51.4 bits (124), Expect = 2e-07
Identities = 20/91 (21%), Positives = 44/91 (48%), Gaps = 12/91 (13%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNT 410
G + + +ARAL+ ++ ILDE T+ +D+ ++ ++ + + T+L +H
Sbjct: 150 GMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILK-QASQEGLTILVSSH---- 204
Query: 411 IID-----SDRVLVLDKGLVVEFDSPSVLMK 436
+ DR+ ++ G +VE + L +
Sbjct: 205 NMLEVEFLCDRIALIHNGTIVETGTVEELKE 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 4e-07
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 17/118 (14%)
Query: 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 546
S+ V +VG+ G GKSSL AL ++ +G + I G + +P
Sbjct: 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVP 72
Query: 547 QDPVLFSGTLRLN-LDPVGESSDEAI-WKALELAHLNTFVSNLPARLQHEVSEGGENL 602
Q + + +LR N L G +E ++ L + LP+ + E+ E G NL
Sbjct: 73 QQAWIQNDSLRENIL--FGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 49.5 bits (119), Expect = 9e-07
Identities = 21/103 (20%), Positives = 45/103 (43%), Gaps = 8/103 (7%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLET-----DDLIQSTIRSEFAHCTVLTIAHR 407
GQ+Q + LARA+ I + D+ +A+D +++I + + T + + H
Sbjct: 131 GQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGP--KGMLKNKTRILVTHS 188
Query: 408 LNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDAG 450
++ + D ++V+ G + E S L+ + F +
Sbjct: 189 MSYLPQVDVIIVMSGGKISEMGSYQELLARDGA-FAEFLRTYA 230
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 2e-05
Identities = 18/55 (32%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
Query: 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
W EG LV +VG+ G GKSSL AL ++ +G + I G
Sbjct: 13 WARSDPPTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG 66
|
| >3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 5e-06
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 5/49 (10%)
Query: 169 ERIKEYGETPQEAEW----VNDKKPKDEWPEKGEVEFKDYKVRYREGLE 213
E I+++ E Q K + EW EK + + +++ R E +E
Sbjct: 85 ESIRKWREE-QRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVE 132
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 8e-06
Identities = 33/185 (17%), Positives = 71/185 (38%), Gaps = 16/185 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---LN 409
G + + LARA+LR IL+LDE T +D + + + + T +TI+H L+
Sbjct: 552 GWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLD 609
Query: 410 TIIDSDRVLVLDKGLVVEFD---SPSVLMKNKASIFYSMAKDA-----GLAWLAVRLETV 461
+ + ++ + + ++ + V A + ++ ++T
Sbjct: 610 NVC--EYIINYEGLKLRKYKGNFTEFVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTK 667
Query: 462 GN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPAD 520
++ + + S + ++ ++G GAGKS+L L + P
Sbjct: 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTS 727
Query: 521 GTIII 525
G +
Sbjct: 728 GEVYT 732
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 43.5 bits (102), Expect = 2e-04
Identities = 16/80 (20%), Positives = 35/80 (43%), Gaps = 7/80 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---LN 409
GQ+ + LA ++ +++LDE T +D ++ + ++ EF V+ I H
Sbjct: 905 GQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALK-EFE-GGVIIITHSAEFTK 962
Query: 410 TIIDSDRVLVLDKGLVVEFD 429
+ ++ V + G +
Sbjct: 963 NL--TEEVWAVKDGRMTPSG 980
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 45.6 bits (109), Expect = 1e-05
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 21/91 (23%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
G+RQ + LARAL+ + ++L+LDE +A+DL+T ++ +R + + I
Sbjct: 130 GERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRF---------VQREFDVPI 180
Query: 412 I----D-------SDRVLVLDKGLVVEFDSP 431
+ D +D V V+ G +VE
Sbjct: 181 LHVTHDLIEAAMLADEVAVMLNGRIVEKGKL 211
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 45.2 bits (108), Expect = 3e-05
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAI-DLETDDLIQ--STIRSEFAHCTVLTIAHRLN 409
GQ +L+ + RAL+ K++++DE A + D+ ++++ T L I HRL+
Sbjct: 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--GITFLIIEHRLD 214
Query: 410 TIID-SDRVLVLDKG 423
+++ D + V+ G
Sbjct: 215 IVLNYIDHLYVMFNG 229
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 3e-05
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258
G ++V ++G GAGK++ A+ ++ G II +G DI H +
Sbjct: 30 PRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 3e-04
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 538
V ++G GAGK++ A+ ++ G II +G DI H +
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVI 78
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 2e-04
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 21/102 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
Q+Q + LARAL++ +L+LDE + +D ++ + R+ + RL T+
Sbjct: 144 AQQQRVALARALVKDPSLLLLDEPFSNLDAR----MRDSARALVKE-----VQSRLGVTL 194
Query: 412 I----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ D +DRV VL KG +V+ P L N SI
Sbjct: 195 LVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 23/102 (22%), Positives = 45/102 (44%), Gaps = 21/102 (20%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN-TI 411
G++Q + LARAL+ KIL+LDE +A+D T + + + + + T+
Sbjct: 131 GEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSV---------LHKKNKLTV 181
Query: 412 I----D-------SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ D +DR+ V+ G +++ P + +
Sbjct: 182 LHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.96 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.96 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.96 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.96 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.96 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.94 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.94 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.93 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.93 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.93 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.92 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.92 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.91 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.91 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.9 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.9 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.89 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.89 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.89 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.89 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.89 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.89 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.89 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.89 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.87 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.87 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.87 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.86 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.86 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.86 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.85 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.85 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.81 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.81 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.81 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.81 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.81 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.81 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.8 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.8 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.79 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.79 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.79 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.79 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.79 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.79 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.78 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.78 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.78 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.78 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.78 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.78 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.77 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.77 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.77 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.77 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.77 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.77 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.77 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.76 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.76 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.75 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.73 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.73 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.73 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.72 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.72 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.71 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.71 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.7 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.69 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.69 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.69 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.68 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.68 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.67 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.66 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.64 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.61 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.61 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.58 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.57 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.54 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.52 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.52 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.51 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.51 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.5 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.48 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.46 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.45 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.45 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.42 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.42 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.4 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.4 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.38 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.36 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.36 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.36 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.35 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.35 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.35 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.35 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.34 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.34 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.34 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.33 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.31 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.31 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.3 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.28 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.28 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.24 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.24 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.22 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.21 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.21 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.19 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.19 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.19 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.18 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.16 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.16 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.15 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.15 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.14 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.13 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.12 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.11 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.11 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.1 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.09 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.08 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.07 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.07 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.05 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.04 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.03 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.03 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.02 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.01 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.99 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.98 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.98 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 98.98 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.98 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.97 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 98.97 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.95 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.95 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.92 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.92 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.92 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.9 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.89 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.89 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.88 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.87 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.86 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.86 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 98.85 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.85 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.84 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.84 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 98.82 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.81 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.81 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.79 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.79 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.78 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.77 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.76 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.74 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.69 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.69 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.67 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.67 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.67 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.66 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 98.65 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 98.64 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.64 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.63 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 98.62 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 98.62 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 98.61 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.6 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.59 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.58 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.57 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.54 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.54 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.53 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.52 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.5 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 98.5 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 98.48 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.48 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.47 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.47 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.45 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.44 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.44 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 98.44 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.42 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.39 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.38 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.37 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 98.37 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 98.33 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.32 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 98.29 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.29 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.28 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.27 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.26 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.25 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.24 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 98.24 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 98.24 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 98.23 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.22 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.22 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.21 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.21 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.2 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.2 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.19 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.16 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.14 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.09 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.08 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.08 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.08 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 98.07 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 98.06 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.05 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 98.05 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.03 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.02 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.01 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.01 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.0 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.0 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.0 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.99 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 97.98 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 97.97 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 97.97 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.96 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 97.96 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 97.96 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.94 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 97.86 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 97.83 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.81 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.81 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.79 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 97.79 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.78 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.77 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.76 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 97.76 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 97.75 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 97.73 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.73 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.72 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 97.72 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 97.71 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.65 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.63 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.63 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 97.63 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 97.62 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.61 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.61 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.61 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 97.6 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.59 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 97.54 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.52 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.52 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.5 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.48 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.48 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.45 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.44 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 97.42 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.41 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 97.4 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.39 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.38 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 97.37 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 97.37 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 97.36 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 97.34 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 97.33 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.33 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.32 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.3 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 97.3 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.3 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.27 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 97.26 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 97.25 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 97.22 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 97.21 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 97.21 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.18 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.16 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.14 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.14 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.13 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.12 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.11 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.11 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.1 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.09 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 97.09 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.06 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.04 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.0 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 96.99 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.99 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.99 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.99 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.98 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 96.94 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.94 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.93 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 96.93 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.93 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.91 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.88 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 96.84 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.84 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.84 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.82 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 96.79 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.79 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.79 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.79 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.77 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.77 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.75 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.73 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 96.72 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.69 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 96.67 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.65 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.65 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.63 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.62 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.58 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.57 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.55 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.54 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 96.53 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.51 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.49 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 96.44 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.44 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.43 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 96.43 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.43 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.41 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.4 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.38 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.38 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.35 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 96.35 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 96.34 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 96.3 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.3 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 96.28 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 96.28 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.26 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.22 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.18 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.15 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.15 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.13 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.13 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 96.12 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.08 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 96.07 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.06 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 96.03 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 96.01 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.01 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.0 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 95.99 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 95.98 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.96 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.95 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 95.95 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 95.94 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.9 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 95.9 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 95.89 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 95.87 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.86 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.81 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.8 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.8 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.78 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.76 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 95.74 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.74 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.74 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.72 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 95.72 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.66 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 95.66 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.65 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 95.64 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.62 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 95.61 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 95.6 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 95.53 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 95.53 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.53 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.52 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 95.48 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.48 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 95.47 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.47 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 95.46 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.46 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 95.45 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 95.45 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 95.45 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.45 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.42 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 95.4 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 95.4 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 95.4 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 95.38 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.37 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.36 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-79 Score=733.25 Aligned_cols=400 Identities=23% Similarity=0.293 Sum_probs=276.2
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVF-- 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 77 (602)
.+.+.|+..+||.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.++..++ +..+.+
T Consensus 161 ~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~~~~~i~~~i~~~~~~~~l~l 240 (1321)
T 4f4c_A 161 LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQYLSQFITGFIVAFTHSWQLTL 240 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356789999999999999999999999999999999999999999999877666666665555443322 111111
Q ss_pred HHHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HH-------HHHHHHHHhhh----------h
Q psy3001 78 FYGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RV-------LSRFSSDVNTL----------D 130 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~-------~~r~~~~~~~~----------~ 130 (602)
+....+|+..+. ..+ +...+..+...+ ....+.|...| +. .++|.+..... .
T Consensus 241 v~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (1321)
T 4f4c_A 241 VMLAVTPIQALCGFAIAKSMSTFAIRETLRYAK-AGKVVEETISSIRTVVSLNGLRYELERYSTAVEEAKKAGVLKGLFL 319 (1321)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111112221111 111 111222222222 12234444444 11 13333211110 0
Q ss_pred h-------HH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 131 N-------KL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 131 ~-------~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
. .+ .++.+. ++.+...+..|+..+...+..++++..+++|+.++++.+++.
T Consensus 320 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~ 399 (1321)
T 4f4c_A 320 GISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLGTAQGAASGIYEVLDRKPVI 399 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 0 00 011222 223344456677778888899999999999999999876554
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+.... ......+..+.++|+||+|+|+.. ++.+||||+||||||||+++|.|+|+|++|+|.+|
T Consensus 400 ~~~~~-~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~id 478 (1321)
T 4f4c_A 400 DSSSK-AGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITID 478 (1321)
T ss_dssp SCSSS-CCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEET
T ss_pred ccccc-ccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCC
Confidence 32111 111222345678888888888531 27899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVAT 325 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 325 (602)
|+|+++++...+|++|+||+|+ |++| .++++.| +..... ...++...+.
T Consensus 479 G~~i~~~~~~~lr~~i~~v~Q~-----------~~Lf-------------~~TI~eN------I~~g~~~~~~~~v~~a~ 528 (1321)
T 4f4c_A 479 GVDVRDINLEFLRKNVAVVSQE-----------PALF-------------NCTIEEN------ISLGKEGITREEMVAAC 528 (1321)
T ss_dssp TEETTTSCHHHHHHHEEEECSS-----------CCCC-------------SEEHHHH------HHTTCTTCCHHHHHHHH
T ss_pred CccchhccHHHHhhcccccCCc-----------ceee-------------CCchhHH------HhhhcccchHHHHHHHH
Confidence 9999999999999999999998 7776 3333332 221111 1111111111
Q ss_pred HH-H-HHHHh--hcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR-Q-LKRLE--SVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~-~-~~~l~--~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. . .+.++ ..+.+..+++.|.+|| |||||||+||||++++|+|||||||||+||+++++.+.+.|++..+++|+
T Consensus 529 ~~a~l~~~i~~lp~G~~T~vGe~G~~LS--GGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~ 606 (1321)
T 4f4c_A 529 KMANAEKFIKTLPNGYNTLVGDRGTQLS--GGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTT 606 (1321)
T ss_dssp HHTTCHHHHHHSTTTTSSEESSSSCCCC--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEE
T ss_pred HHccchhHHHcCCCCCccEecCCCCCCC--HHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEE
Confidence 11 0 11122 1234556788888999 59999999999999999999999999999999999999999998889999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
|+||||++++..||+|++|++|+|++.|+|+++++
T Consensus 607 iiiaHrls~i~~aD~Iivl~~G~ive~Gth~eL~~ 641 (1321)
T 4f4c_A 607 IIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMA 641 (1321)
T ss_dssp EEECSCTTTTTTCSEEEEEETTEEEEEECHHHHHT
T ss_pred EEEcccHHHHHhCCEEEEeeCCeeeccCCHHHHHH
Confidence 99999999999999999999999999999998864
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-73 Score=673.62 Aligned_cols=401 Identities=22% Similarity=0.310 Sum_probs=270.0
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H--HH
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---T--VF 77 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~--~~ 77 (602)
...+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++++. + .+
T Consensus 133 ~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l 212 (1284)
T 3g5u_A 133 CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLTL 212 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456789999999999999999999999999999999999999999999988877777776655544332111 1 11
Q ss_pred HHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-H----------HHHHHHHHHhhhh----------
Q psy3001 78 FYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-R----------VLSRFSSDVNTLD---------- 130 (602)
Q Consensus 78 ~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-~----------~~~r~~~~~~~~~---------- 130 (602)
+..+++|+..+. .. .+...+..+...+ ....+.|...| + ..++|.+..+...
T Consensus 213 ~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~E~l~gi~~ikaf~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 291 (1284)
T 3g5u_A 213 VILAISPVLGLSAGIWAKILSSFTDKELHAYAK-AGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITA 291 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHTTTCCCCCHHHHHTTCCCCSHHHHHHHHHHHHHHHHHTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHCHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222222211 11 1222222333333 22345566555 1 1134433111100
Q ss_pred hH-------H-------HH------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Q psy3001 131 NK-------L-------TL------------SVQQT---LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEA 181 (602)
Q Consensus 131 ~~-------~-------~~------------~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~ 181 (602)
.. + .. +.+.+ +.+......++..+...+..++.+..+++|+.++++.+++.
T Consensus 292 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 371 (1284)
T 3g5u_A 292 NISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSI 371 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcC
Confidence 00 0 00 00111 11122334456666777888899999999999999876543
Q ss_pred ccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 182 EWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
+..... .....+..+.++|+||+|+|+.+ ++++|||||||||||||+++|+|+++|++|+|.+|
T Consensus 372 ~~~~~~-~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~ 450 (1284)
T 3g5u_A 372 DSFSKS-GHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSID 450 (1284)
T ss_dssp SSCCSS-CCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEET
T ss_pred Cccccc-CCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC
Confidence 221111 11111224567777777777421 27899999999999999999999999999999999
Q ss_pred CeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHH
Q psy3001 247 GVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVAT 325 (602)
Q Consensus 247 g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 325 (602)
|+|+..++...+|++|++|+|+ |++| .+++.. ++..... ...++.....
T Consensus 451 g~~i~~~~~~~~r~~i~~v~Q~-----------~~l~-------------~~ti~e------Ni~~g~~~~~~~~~~~~~ 500 (1284)
T 3g5u_A 451 GQDIRTINVRYLREIIGVVSQE-----------PVLF-------------ATTIAE------NIRYGREDVTMDEIEKAV 500 (1284)
T ss_dssp TEEGGGSCHHHHHHHEEEECSS-----------CCCC-------------SSCHHH------HHHHHCSSCCHHHHHHHH
T ss_pred CEEHHhCCHHHHHhheEEEcCC-----------CccC-------------CccHHH------HHhcCCCCCCHHHHHHHH
Confidence 9999999999999999999998 4444 222222 1111000 0111111111
Q ss_pred HH--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. ..+.+.. .+.+..+++.|.+|| |||||||+|||||+++|+|||||||||+||+++++.+.+.++...+++|+
T Consensus 501 ~~~~~~~~i~~l~~g~~t~~~~~g~~LS--gGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~ 578 (1284)
T 3g5u_A 501 KEANAYDFIMKLPHQFDTLVGERGAQLS--GGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTT 578 (1284)
T ss_dssp HHTTCHHHHHHSTTGGGCCCSSSSCSSC--HHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHhCcHHHHHhccccccccccCCCCccC--HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEE
Confidence 10 0111111 123344677788888 59999999999999999999999999999999999999999888789999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhhc
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~ 437 (602)
|+||||++++..||+|++|++|++++.|+++++++.
T Consensus 579 i~itH~l~~i~~~d~i~vl~~G~i~~~g~~~~l~~~ 614 (1284)
T 3g5u_A 579 IVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMRE 614 (1284)
T ss_dssp EEECSCHHHHTTCSEEEECSSSCCCCEECHHHHHHT
T ss_pred EEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999989999999999999999999998754
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-55 Score=526.87 Aligned_cols=414 Identities=22% Similarity=0.298 Sum_probs=273.8
Q ss_pred cchhhHHHHHHHHHHHHHHHcCccccccc--ccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH-
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFDT--TPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV- 76 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~~--~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~- 76 (602)
...+.++++++|.++|++++++|++||+. +++|++++|+++|++.++..++..+..++..++.++..+++ ..+.
T Consensus 819 ~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 819 GIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHH
Confidence 45678999999999999999999999985 78999999999999999998877777777666555443321 1111
Q ss_pred -HHHHHHHHHHHHHHHH------HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------
Q psy3001 77 -FFYGFVISLGTLFAAK------RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT---------- 128 (602)
Q Consensus 77 -~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~---------- 128 (602)
++...++++..+.... ....+..+...+ ...++.|...| +++ +++.+..+.
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~ 977 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFAD-SGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAF 977 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHH-HHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111222222211100 000011111111 11233444444 111 222221110
Q ss_pred hhhHH--------H------HHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3001 129 LDNKL--------T------LSVQQT-----------------LSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGET 177 (602)
Q Consensus 129 ~~~~~--------~------~~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~ 177 (602)
+.... . ..++.. +.+......++..+...+..++....+.+|+.++++.
T Consensus 978 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~ 1057 (1321)
T 4f4c_A 978 IQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRK 1057 (1321)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 00000 0 000000 0000001112334456778899999999999999987
Q ss_pred CcccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCce
Q psy3001 178 PQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGT 242 (602)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~ 242 (602)
+++.+. ...+...|+..+.++|+||+|+|+.+ ++.+||||+||||||||+++|.|+|+|++|+
T Consensus 1058 ~~~~~~--~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~ 1135 (1321)
T 4f4c_A 1058 ISKIDS--LSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGE 1135 (1321)
T ss_dssp CCSSCT--TCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSE
T ss_pred cccCCC--ccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCE
Confidence 665432 22233346667889999999999532 2779999999999999999999999999999
Q ss_pred EEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHH
Q psy3001 243 IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY 322 (602)
Q Consensus 243 I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (602)
|.+||+|+++++...+|++|++|||+ |++| .++++.|-... ..+.....++..
T Consensus 1136 I~iDG~di~~i~~~~lR~~i~~V~Qd-----------p~LF-------------~gTIreNI~~g---ld~~~~sd~ei~ 1188 (1321)
T 4f4c_A 1136 IFIDGSEIKTLNPEHTRSQIAIVSQE-----------PTLF-------------DCSIAENIIYG---LDPSSVTMAQVE 1188 (1321)
T ss_dssp EEETTEETTTBCHHHHHTTEEEECSS-----------CCCC-------------SEEHHHHHSSS---SCTTTSCHHHHH
T ss_pred EEECCEEhhhCCHHHHHhheEEECCC-----------CEee-------------CccHHHHHhcc---CCCCCCCHHHHH
Confidence 99999999999999999999999998 6666 44444431100 000000111111
Q ss_pred HHHHH-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc
Q psy3001 323 VATSR-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH 398 (602)
Q Consensus 323 ~~~~~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~ 398 (602)
.+... .+ +.+.. .+.+..+++.|.++| ||||||+||||||+++|+|||||||||+||+++++.+++.|++..++
T Consensus 1189 ~Al~~a~l~~~I~~Lp~GldT~vge~G~~LS--gGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~ 1266 (1321)
T 4f4c_A 1189 EAARLANIHNFIAELPEGFETRVGDRGTQLS--GGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREG 1266 (1321)
T ss_dssp HHHHHTTCHHHHHTSTTTTCSEETTTSCSSC--HHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSS
T ss_pred HHHHHhCChHHHHcCcCCCCCEecCCCcccC--HHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCC
Confidence 11110 11 11111 234556788888999 59999999999999999999999999999999999999999999899
Q ss_pred cEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 399 CTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 399 ~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
+|+|+||||++++.+||||+||++|+|+|+|+|++++++ ++.|+.+++.+
T Consensus 1267 ~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q 1316 (1321)
T 4f4c_A 1267 RTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQ 1316 (1321)
T ss_dssp SEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C----------
T ss_pred CEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHH
Confidence 999999999999999999999999999999999999987 56787777543
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-51 Score=456.06 Aligned_cols=407 Identities=21% Similarity=0.295 Sum_probs=269.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|+.||+++++|++++|+++|++.++..+...+..++..++.++..+++ +.+. ++
T Consensus 89 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 168 (587)
T 3qf4_A 89 YASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSV 168 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888999999999999999999999999999999999999999998876666665554443332221 1110 11
Q ss_pred HHHHHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhhh-----------
Q psy3001 79 YGFVISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTLD----------- 130 (602)
Q Consensus 79 ~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~~----------- 130 (602)
..+.+++.. ....+ ....+..+...+ ....+.|...| +.+ ++|.+..+...
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 169 LIFLIPPIVLLFVWLTKKGNPLFRKIQESTDE-VNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111 111122222222 12234444444 111 22222111000
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++++. ++.+...+..|+..+...+..++++..+.+|+.++++.+++.+
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 000 001222 1223344556677777888889999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
.... .....+..+.++++||+|+|+++ +|++||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 328 ~~~~--~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~ 405 (587)
T 3qf4_A 328 EADN--ALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDEL 405 (587)
T ss_dssp CCTT--CBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSS
T ss_pred CCCC--ccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCE
Confidence 1111 11111233566777777776421 2889999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH-
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS- 326 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~- 326 (602)
|+.+++...+|++++||||+ |.+| ..++..| +..... ...++......
T Consensus 406 ~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~tv~en------i~~~~~~~~~~~~~~~~~~ 455 (587)
T 3qf4_A 406 DVRTVKLKDLRGHISAVPQE-----------TVLF-------------SGTIKEN------LKWGREDATDDEIVEAAKI 455 (587)
T ss_dssp BGGGBCHHHHHHHEEEECSS-----------CCCC-------------SEEHHHH------HTTTCSSCCHHHHHHHHHH
T ss_pred EcccCCHHHHHhheEEECCC-----------CcCc-------------CccHHHH------HhccCCCCCHHHHHHHHHH
Confidence 99999999999999999998 4444 2222221 111100 01111111110
Q ss_pred -HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEE
Q psy3001 327 -RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLT 403 (602)
Q Consensus 327 -~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 403 (602)
...+.+..+ +.+...++.+.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+
T Consensus 456 ~~~~~~i~~l~~g~~~~~~~~~~~LS--gGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~ 533 (587)
T 3qf4_A 456 AQIHDFIISLPEGYDSRVERGGRNFS--GGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFI 533 (587)
T ss_dssp TTCHHHHHTSSSGGGCEECSSSCSSC--HHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEE
T ss_pred hCcHHHHHhcccchhhHhcCCCCCcC--HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 011111111 33445677788888 5999999999999999999999999999999999999999998878999999
Q ss_pred eeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 404 IAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
||||++.+..||||++|++|++++.|+++++++. .+.|..+.
T Consensus 534 itH~l~~~~~~d~i~vl~~G~i~~~g~~~el~~~-~~~~~~~~ 575 (587)
T 3qf4_A 534 ITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPYREIY 575 (587)
T ss_dssp EESCHHHHTTSSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred EecChHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 9999999988999999999999999999999875 44555444
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-52 Score=458.74 Aligned_cols=407 Identities=24% Similarity=0.356 Sum_probs=271.9
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHHHH--
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITVFF-- 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~-- 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..+++ ..+.+.
T Consensus 103 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 182 (598)
T 3qf4_B 103 TLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLV 182 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999999999999999999999999999999998876666666555444332221 111111
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
..+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+. ..
T Consensus 183 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 261 (598)
T 3qf4_B 183 TLSIVPLTVLITQIVSSQTRKYFYENQRVLGQ-LNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSG 261 (598)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111 111111222222 11234444444 111 223221110 00
Q ss_pred ------hHH-H------------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-T------------------LSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-~------------------~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ . ++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 262 ~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 341 (598)
T 3qf4_B 262 VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEEEKD 341 (598)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 000 0 01111 1222334566788888999999999999999999998766532
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC-------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG-------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~-------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.. .....++..+.++++||+|+|+++ ++++||+||||||||||+++|+|+++|++|+|.+||+|
T Consensus 342 ~~---~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~ 418 (598)
T 3qf4_B 342 DP---DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGID 418 (598)
T ss_dssp CS---SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEE
T ss_pred CC---CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEE
Confidence 11 111122334678888888888532 38899999999999999999999999999999999999
Q ss_pred cCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH--
Q psy3001 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS-- 326 (602)
Q Consensus 250 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~-- 326 (602)
+.+++...+|+++++|||+ |.+| ..++..| +..... ...++......
T Consensus 419 i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~tv~en------i~~~~~~~~~~~~~~~~~~~ 468 (598)
T 3qf4_B 419 IRKIKRSSLRSSIGIVLQD-----------TILF-------------STTVKEN------LKYGNPGATDEEIKEAAKLT 468 (598)
T ss_dssp GGGSCHHHHHHHEEEECTT-----------CCCC-------------SSBHHHH------HHSSSTTCCTTHHHHHTTTT
T ss_pred hhhCCHHHHHhceEEEeCC-----------Cccc-------------cccHHHH------HhcCCCCCCHHHHHHHHHHh
Confidence 9999999999999999998 4333 2222111 110000 00001100000
Q ss_pred HHHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEe
Q psy3001 327 RQLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTI 404 (602)
Q Consensus 327 ~~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~i 404 (602)
...+.++. .+.....++.|.++| ||||||++|||||+++|++||||||||+||++++..+.+.+++..+++|+|+|
T Consensus 469 ~~~~~~~~~~~g~~t~~~~~g~~LS--gGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~i 546 (598)
T 3qf4_B 469 HSDHFIKHLPEGYETVLTDNGEDLS--QGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIII 546 (598)
T ss_dssp TCHHHHHTSTTGGGCBCHHHHTTSC--HHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEE
T ss_pred CCHHHHHhccccccchhcCCCCCCC--HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 00011111 122334566677888 69999999999999999999999999999999999999999988788999999
Q ss_pred eecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 405 AHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|||++.+..||+|++|++|++++.|+++++++. .+.|+.+..
T Consensus 547 tH~l~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 588 (598)
T 3qf4_B 547 AHRLNTIKNADLIIVLRDGEIVEMGKHDELIQK-RGFYYELFT 588 (598)
T ss_dssp SCCTTHHHHCSEEEEECSSSEEECSCHHHHHHT-TCHHHHHHH
T ss_pred ecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHH
Confidence 999999988999999999999999999999876 455655543
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-51 Score=452.74 Aligned_cols=406 Identities=20% Similarity=0.282 Sum_probs=264.7
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.+++.+...+..++..++.++..++ ...+. ++
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l~ 166 (578)
T 4a82_A 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLA 166 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHCTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45778899999999999999999999999999999999999999988765433333333322222111 11110 11
Q ss_pred HHHHHHHHH---HHHHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh----------hh-
Q psy3001 79 YGFVISLGT---LFAAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT----------LD- 130 (602)
Q Consensus 79 ~~~~~~~~~---~~~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~----------~~- 130 (602)
..+.+++.. ....+ +...+..+...+ ....+.|...| +.+ ++|.+.... ..
T Consensus 167 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (578)
T 4a82_A 167 ALFIFPFYILTVYVFFGRLRKLTRERSQALAE-VQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNA 245 (578)
T ss_dssp HTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111111 11111 111122222222 11234444444 111 222221110 00
Q ss_pred ------hHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 131 ------NKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 131 ------~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
..+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 325 (578)
T 4a82_A 246 YSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIK 325 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 000 001121 2223344556778888889999999999999999998765533
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
..... ....+..+.++++||+|+|+ +| +++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 326 ~~~~~--~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G-~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 402 (578)
T 4a82_A 326 NGVGA--QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402 (578)
T ss_dssp CCTTC--CCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETT
T ss_pred CCCCc--cccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCC-CEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECC
Confidence 11111 11112234566666666664 33 88999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATS 326 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 326 (602)
+|+.+++...+|+++++|||+ |.+| .+++. +++..... ...++......
T Consensus 403 ~~~~~~~~~~~r~~i~~v~Q~-----------~~l~-------------~~tv~------eni~~~~~~~~~~~~~~~~~ 452 (578)
T 4a82_A 403 HNIKDFLTGSLRNQIGLVQQD-----------NILF-------------SDTVK------ENILLGRPTATDEEVVEAAK 452 (578)
T ss_dssp EEGGGSCHHHHHHTEEEECSS-----------CCCC-------------SSBHH------HHHGGGCSSCCHHHHHHHHH
T ss_pred EEhhhCCHHHHhhheEEEeCC-----------CccC-------------cccHH------HHHhcCCCCCCHHHHHHHHH
Confidence 999999999999999999998 4433 22222 22111100 01111111110
Q ss_pred H--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. ..+.+.. .+.+...++.|.++| ||||||++|||||+++|++|+||||||+||+++++.+.+.+++..+++|+|
T Consensus 453 ~~~~~~~~~~lp~g~~t~~~~~g~~LS--gGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i 530 (578)
T 4a82_A 453 MANAHDFIMNLPQGYDTEVGERGVKLS--GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTL 530 (578)
T ss_dssp HTTCHHHHHTSTTGGGCBCCGGGTTSC--HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEE
T ss_pred HhCcHHHHHhCcchhhhhhccCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 0111111 123345667778888 599999999999999999999999999999999999999999887889999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMA 446 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~ 446 (602)
+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.
T Consensus 531 ~itH~l~~~~~~d~i~~l~~G~i~~~g~~~el~~~-~~~~~~~~ 573 (578)
T 4a82_A 531 IVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEHLY 573 (578)
T ss_dssp EECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHHHH
T ss_pred EEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHH
Confidence 99999999988999999999999999999999876 44555444
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-49 Score=440.61 Aligned_cols=406 Identities=25% Similarity=0.332 Sum_probs=270.3
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHH-
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMP---VTITVFFY- 79 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~- 79 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..++ ++.+.+.+
T Consensus 91 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b5x_A 91 WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLV 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 45788999999999999999999999999999999999999999999877666666665554433222 11121111
Q ss_pred -HHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhh-------------
Q psy3001 80 -GFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNT------------- 128 (602)
Q Consensus 80 -~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~------------- 128 (602)
.+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+.
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b5x_A 171 LIVVAPVVAFAISFVSKRFRKISRNMQTAMGH-VTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQS 249 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1111211111 111 111111122122 11234444444 111 222221111
Q ss_pred ----hhhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 129 ----LDNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 129 ----~~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
+...+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b5x_A 250 IADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETERD 329 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 00000 011222 2334455667888888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEecC--------------CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYREG--------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 248 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~~~--------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~ 248 (602)
. ... ..++..+.++++||+|+|+++ ++++||+||||||||||+++|+|+++|++|+|.+||+
T Consensus 330 ~--~~~--~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~ 405 (582)
T 3b5x_A 330 N--GKY--EAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGH 405 (582)
T ss_pred C--CCC--CCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCE
Confidence 1 100 111223567777887777521 2789999999999999999999999999999999999
Q ss_pred ecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHH
Q psy3001 249 DIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATS 326 (602)
Q Consensus 249 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 326 (602)
++.+.+...+|+++++|||+ |.+| ..++. +++.... ....++......
T Consensus 406 ~~~~~~~~~~~~~i~~v~Q~-----------~~l~-------------~~tv~------eni~~~~~~~~~~~~~~~~~~ 455 (582)
T 3b5x_A 406 DVRDYKLTNLRRHFALVSQN-----------VHLF-------------NDTIA------NNIAYAAEGEYTREQIEQAAR 455 (582)
T ss_pred EhhhCCHHHHhcCeEEEcCC-----------Cccc-------------cccHH------HHHhccCCCCCCHHHHHHHHH
Confidence 99999999999999999998 3333 11111 1111100 000011111000
Q ss_pred H-HH-HHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEE
Q psy3001 327 R-QL-KRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVL 402 (602)
Q Consensus 327 ~-~~-~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi 402 (602)
. .+ +.++. .+.+...++.+.++| ||||||++|||||+++|++|+||||||+||+++++.+.+.+++..+++|+|
T Consensus 456 ~~~l~~~~~~~p~g~~t~~~~~~~~LS--gGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi 533 (582)
T 3b5x_A 456 QAHAMEFIENMPQGLDTVIGENGTSLS--GGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVL 533 (582)
T ss_pred HCCCHHHHHhCcccccchhcCCCCcCC--HHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 0 00 11111 123344566777888 599999999999999999999999999999999999999999887789999
Q ss_pred EeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 403 TIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.+
T Consensus 534 ~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b5x_A 534 VIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQ-DGAYAQLHR 577 (582)
T ss_pred EEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 99999999988999999999999999999999875 445555443
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=439.38 Aligned_cols=405 Identities=24% Similarity=0.343 Sum_probs=268.7
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHH---HHHH--HH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPV---TITV--FF 78 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~---~~~~--~~ 78 (602)
..+.++..++|.++|+|++++|++||+++++|++++|+++|++.++..+...+..++..++.++..+++ +.+. ++
T Consensus 91 ~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~li 170 (582)
T 3b60_A 91 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSII 170 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 357888999999999999999999999999999999999999999998776666666655544432221 1111 11
Q ss_pred HHHHHHHHHHH---HHH---HHHHHHHHHhhcccchhhhhcchh----HHH-------HHHHHHHhhh------------
Q psy3001 79 YGFVISLGTLF---AAK---RLHEKLLKSMLRWSPLFFDTTPVG----RVL-------SRFSSDVNTL------------ 129 (602)
Q Consensus 79 ~~~~~~~~~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~g----~~~-------~r~~~~~~~~------------ 129 (602)
..+.+++..+. ..+ +...+..+...+ ....+.+...| +.+ ++|.+..+..
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (582)
T 3b60_A 171 LVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQ-VTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASS 249 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111111111 111 111111222222 11234444444 222 2222211110
Q ss_pred -----hhHH-------------------HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q psy3001 130 -----DNKL-------------------TLSVQQ---TLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAE 182 (602)
Q Consensus 130 -----~~~~-------------------~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~ 182 (602)
...+ .++++. ++.+...+..|+..+...+..++++..+++|+.++++.+++.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~ 329 (582)
T 3b60_A 250 ISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQEKD 329 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc
Confidence 0000 012222 2334556677888888999999999999999999998765432
Q ss_pred cccCCCCCCCCCCCCcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 183 WVNDKKPKDEWPEKGEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.... ..++..+.++++||+|+|+ +| +++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 330 ~~~~----~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G-~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 330 EGKR----VIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp CCCB----CCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CCCC----CCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCC-CEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 1100 0111223455555555553 44 88999999999999999999999999999999999
Q ss_pred eecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHH
Q psy3001 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVAT 325 (602)
Q Consensus 248 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 325 (602)
+++.+++...+|+++++|||++ .+| ..+. .+++.... ....++.....
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~-----------~l~-------------~~tv------~eni~~~~~~~~~~~~~~~~l 454 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNV-----------HLF-------------NDTV------ANNIAYARTEEYSREQIEEAA 454 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSC-----------CCC-------------SSBH------HHHHHTTTTSCCCHHHHHHHH
T ss_pred EEccccCHHHHHhhCeEEccCC-----------cCC-------------CCCH------HHHHhccCCCCCCHHHHHHHH
Confidence 9999999999999999999983 333 1121 11111100 00001111100
Q ss_pred HH--HHHHHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEE
Q psy3001 326 SR--QLKRLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTV 401 (602)
Q Consensus 326 ~~--~~~~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tv 401 (602)
.. ..+.++. .+.+...++.+.++| ||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+
T Consensus 455 ~~~~l~~~~~~~p~g~~~~~~~~~~~LS--gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tv 532 (582)
T 3b60_A 455 RMAYAMDFINKMDNGLDTIIGENGVLLS--GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTS 532 (582)
T ss_dssp HTTTCHHHHHHSTTGGGSBCCTTSCSSC--HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEE
T ss_pred HHcCCHHHHHhccccccccccCCCCCCC--HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEE
Confidence 00 0011111 123345666778888 59999999999999999999999999999999999999999988778999
Q ss_pred EEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 402 LTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 402 i~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|+||||++.+..||+|++|++|++++.|+++++++. .+.|..+.+
T Consensus 533 i~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~ 577 (582)
T 3b60_A 533 LVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYAQLHK 577 (582)
T ss_dssp EEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHHHHHH
T ss_pred EEEeccHHHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHHHHH
Confidence 999999999988999999999999999999999865 445554443
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-47 Score=449.97 Aligned_cols=415 Identities=21% Similarity=0.297 Sum_probs=266.3
Q ss_pred cchhhHHHHHHHHHHHHHHHcCcccccc--cccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH---H--
Q psy3001 3 ANGSIRASKGLHLVVLRNILHSCMSFFD--TTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLYLMPVTI---T-- 75 (602)
Q Consensus 3 ~~~~~~~~~~l~~~~~~~l~~~~~~~f~--~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~-- 75 (602)
...+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..+..++..+++.. +
T Consensus 774 ~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l 853 (1284)
T 3g5u_A 774 GKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQL 853 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 3467889999999999999999999999 58999999999999999999887777766666555443332110 0
Q ss_pred HHHHHHHHHHHHHH---HH---HHHHHHHHHHhhcccchhhhhcchh-----------HHHHHHHHHHhhh-----hh--
Q psy3001 76 VFFYGFVISLGTLF---AA---KRLHEKLLKSMLRWSPLFFDTTPVG-----------RVLSRFSSDVNTL-----DN-- 131 (602)
Q Consensus 76 ~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~g-----------~~~~r~~~~~~~~-----~~-- 131 (602)
.++....+|+..+. .. .....+..+...+ ....+.+...| +..+++....+.. ..
T Consensus 854 ~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~ 932 (1284)
T 3g5u_A 854 TLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEG-SGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH 932 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11111122222111 11 1111111111111 11123333333 1222222211100 00
Q ss_pred H--HHHHHH------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q psy3001 132 K--LTLSVQ------------------------------QTLSQPFKITQTLNWLVRMTSDVETNIVAVERIKEYGETPQ 179 (602)
Q Consensus 132 ~--~~~~~~------------------------------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~ 179 (602)
. +...+. .++.+......++..+......++.+..+.+|+.++++.++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~ 1012 (1284)
T 3g5u_A 933 VFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTP 1012 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 0 000000 00111111122233333334445677889999999998765
Q ss_pred ccccccCCCCCCCCCCCCcEEEeeeEEEEecC---------------CceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 180 EAEWVNDKKPKDEWPEKGEVEFKDYKVRYREG---------------LELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~~~---------------~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
+.+.... .....++..+.++|+||+|+|+.+ +|++||+|+||||||||+++|+|+++|++|+|.
T Consensus 1013 ~~~~~~~-~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~ 1091 (1284)
T 3g5u_A 1013 EIDSYST-QGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVF 1091 (1284)
T ss_dssp SSSSCCS-SCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEE
T ss_pred ccccccc-ccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 5332111 111122335678888888888421 388999999999999999999999999999999
Q ss_pred ECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHH
Q psy3001 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA 324 (602)
Q Consensus 245 i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (602)
+||+|++.++...+|+++++|||++ .+| ..++..|-..... .......+....
T Consensus 1092 i~g~~i~~~~~~~~r~~i~~v~Q~~-----------~l~-------------~~ti~eNi~~~~~---~~~~~~~~i~~~ 1144 (1284)
T 3g5u_A 1092 LDGKEIKQLNVQWLRAQLGIVSQEP-----------ILF-------------DCSIAENIAYGDN---SRVVSYEEIVRA 1144 (1284)
T ss_dssp SSSSCTTSSCHHHHTTSCEEEESSC-----------CCC-------------SSBHHHHHTCCCS---SCCCCHHHHHHH
T ss_pred ECCEEcccCCHHHHHhceEEECCCC-----------ccc-------------cccHHHHHhccCC---CCCCCHHHHHHH
Confidence 9999999999999999999999983 333 2222222111000 000011111111
Q ss_pred HHH-HHH-HHhh--cccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccE
Q psy3001 325 TSR-QLK-RLES--VSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCT 400 (602)
Q Consensus 325 ~~~-~~~-~l~~--~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t 400 (602)
..+ .++ .+.. .+.+..+++.|.+|| ||||||++|||||+++|++||||||||+||+.+++.+.+.+++..+++|
T Consensus 1145 ~~~~~~~~~i~~l~~gldt~vge~G~~LS--gGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~t 1222 (1284)
T 3g5u_A 1145 AKEANIHQFIDSLPDKYNTRVGDKGTQLS--GGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRT 1222 (1284)
T ss_dssp HHHHTCHHHHSSTTTGGGCBCSTTSCSSC--HHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSC
T ss_pred HHHhCcHHHHHhCccccccccCCCCCccC--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCE
Confidence 111 111 1111 122334566777888 6999999999999999999999999999999999999999998878899
Q ss_pred EEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHHhh
Q psy3001 401 VLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAKDA 449 (602)
Q Consensus 401 vi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 449 (602)
+|+||||++++..||||++|++|++++.|+|+++++. .+.|+.++..+
T Consensus 1223 vi~isH~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q 1270 (1284)
T 3g5u_A 1223 CIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQ 1270 (1284)
T ss_dssp EEEECSCTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHH
T ss_pred EEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHH
Confidence 9999999999988999999999999999999999987 56777776543
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-45 Score=369.37 Aligned_cols=254 Identities=25% Similarity=0.405 Sum_probs=183.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCCCCcEEEeeeEEEEe--------------cCCceEEEEeccCC
Q psy3001 158 TSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYR--------------EGLELVGIVGRTGA 223 (602)
Q Consensus 158 ~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vs~~~~--------------~~~e~~~lvG~sGs 223 (602)
+..++.++.+++|+.++++.+++....... ....+..+.++|+||+|+|+ +| +++||+|||||
T Consensus 15 ~~~~~~~~~~~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~i~~~~vs~~y~~~~~vL~~isl~i~~G-e~vaivG~sGs 91 (306)
T 3nh6_A 15 VPRGSHMFIDMENMFDLLKEETEVKDLPGA--GPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPG-QTLALVGPSGA 91 (306)
T ss_dssp ----CCTTCCHHHHHHHHHHHHSCCCCTTC--BCCCCSSCCEEEEEEEEESSTTCEEEEEEEEEECTT-CEEEEESSSCH
T ss_pred chhHHHHHHHHHHHHHHHhCCccccccccc--cccCCCCCeEEEEEEEEEcCCCCceeeeeeEEEcCC-CEEEEECCCCc
Confidence 345667778889999988654432211110 00111234566666666664 33 88999999999
Q ss_pred ChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeec
Q psy3001 224 GKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303 (602)
Q Consensus 224 GKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (602)
|||||+++|+|+++|++|+|.++|.++..++...+|+.|+||||+ |.+| ..++
T Consensus 92 GKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~-----------~~lf-------------~~Tv--- 144 (306)
T 3nh6_A 92 GKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQD-----------TVLF-------------NDTI--- 144 (306)
T ss_dssp HHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSS-----------CCCC-------------SEEH---
T ss_pred hHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecC-----------CccC-------------cccH---
Confidence 999999999999999999999999999999999999999999998 3333 1121
Q ss_pred ccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccc
Q psy3001 304 EDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATA 378 (602)
Q Consensus 304 ~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts 378 (602)
.+++.... .....+...... ...+.+..+ +....+++.+.+|| |||||||+|||||+++|+|||||||||
T Consensus 145 ---~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LS--GGqrQRvaiARAL~~~p~iLlLDEPts 219 (306)
T 3nh6_A 145 ---ADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLS--GGEKQRVAIARTILKAPGIILLDEATS 219 (306)
T ss_dssp ---HHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCC--HHHHHHHHHHHHHHHCCSEEEEECCSS
T ss_pred ---HHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCC--HHHHHHHHHHHHHHhCCCEEEEECCcc
Confidence 11111110 001111111100 001111111 23445667778888 599999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 379 AIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 379 ~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
+||+.++..+.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+++++++. .+.|..++.
T Consensus 220 ~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~ 287 (306)
T 3nh6_A 220 ALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQ 287 (306)
T ss_dssp CCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHH
Confidence 99999999999999988778999999999999988999999999999999999999875 556665554
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-45 Score=396.27 Aligned_cols=336 Identities=20% Similarity=0.193 Sum_probs=209.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE---------EECCeecCCCChHHH--hhccceecc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI---------IIDGVDIRTLGLHTL--RSRLTIIPQ 267 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I---------~i~g~~~~~~~~~~~--~~~i~~v~Q 267 (602)
..++|+| .+.+| |++||+|+||||||||+|+|+|+++|++|++ .++|.++........ +..+++++|
T Consensus 36 ~~l~~vs-~i~~G-e~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q 113 (538)
T 1yqt_A 36 FVLYRLP-VVKEG-MVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQ 113 (538)
T ss_dssp CEEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECS
T ss_pred ccccCcC-cCCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhh
Confidence 3788999 88888 9999999999999999999999999999995 234433321100011 124566666
Q ss_pred cchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCc
Q psy3001 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGET 347 (602)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 347 (602)
..... +..+ ..++.+. +. ......+..+.++.++..........+
T Consensus 114 ~~~~~-------~~~~-------------------~~~v~e~--------~~-~~~~~~~~~~~l~~lgl~~~~~~~~~~ 158 (538)
T 1yqt_A 114 YVDLI-------PKAV-------------------KGKVIEL--------LK-KADETGKLEEVVKALELENVLEREIQH 158 (538)
T ss_dssp CGGGS-------GGGC-------------------CSBHHHH--------HH-HHCSSSCHHHHHHHTTCTTTTTSBGGG
T ss_pred hhhhc-------chhh-------------------hccHHHH--------Hh-hhhHHHHHHHHHHHcCCChhhhCChhh
Confidence 42110 0000 0001000 00 000001112233344444445555667
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
|| |||||||+|||||+.+|++|||||||++||+.+..++.+.|+++. .++|||+||||++++.. ||+|++|++|..
T Consensus 159 LS--gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~~~ 236 (538)
T 1yqt_A 159 LS--GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPG 236 (538)
T ss_dssp CC--HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETT
T ss_pred CC--HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCccc
Confidence 77 699999999999999999999999999999999999999998864 47999999999999988 999999986422
Q ss_pred EeecChhHHhhcchhHHHHHHHhh---hh--hHH----H-HHHHh--hhh-hHHHHHHHHHHHhcccccccceeeEEecc
Q psy3001 426 VEFDSPSVLMKNKASIFYSMAKDA---GL--AWL----A-VRLET--VGN-LITFSAALLAVLSKETLNAGLVGLSVSYA 492 (602)
Q Consensus 426 ~~~g~~~~l~~~~~~~~~~~~~~~---~~--~~~----~-~~~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~G 492 (602)
.++....-..........+.... .. ... . ..... ... .+.+.... .......+..++|++++|
T Consensus 237 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~l~~~~~~i~~G 312 (538)
T 1yqt_A 237 -VYGIFSQPKGTRNGINEFLRGYLKDENVRFRPYEIKFTKTGERVEIERETLVTYPRLV---KDYGSFRLEVEPGEIKKG 312 (538)
T ss_dssp -TEEEECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCCCSSGGGSSCCCEEEEECCEE---EEETTEEEEECCEEEETT
T ss_pred -ccccccchhhHHHHHHHHhhhccchhhhcccccccccccCCcccccCCCeEEEEeeEE---EEECCEEEEeCccccCCC
Confidence 11110000000000000000000 00 000 0 00000 000 00000000 000112334567778999
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCC--CC-CcH
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPV--GE-SSD 568 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~--~~-~~~ 568 (602)
|++||+|+||||||||+++|+|+++|++|+|.++ .+++||||++.. +..||.+++... .. ...
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~-------------~~i~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~ 379 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWD-------------LTVAYKPQYIKADYEGTVYELLSKIDASKLNSN 379 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCCC-------------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHTCH
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEC-------------ceEEEEecCCcCCCCCcHHHHHHhhhccCCCHH
Confidence 9999999999999999999999999999999862 369999999965 566998876421 11 234
Q ss_pred HHHHHHHHHcCCCccccccccC
Q psy3001 569 EAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 569 ~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.+.++++.+++.++.++.|..
T Consensus 380 ~~~~~~l~~~~l~~~~~~~~~~ 401 (538)
T 1yqt_A 380 FYKTELLKPLGIIDLYDREVNE 401 (538)
T ss_dssp HHHHHTTTTTTCGGGTTSBGGG
T ss_pred HHHHHHHHHcCChhhhcCChhh
Confidence 5688899999998766655543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-44 Score=398.81 Aligned_cols=335 Identities=18% Similarity=0.194 Sum_probs=208.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE---------EECCeecCCCChHH--Hhhccceeccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI---------IIDGVDIRTLGLHT--LRSRLTIIPQV 268 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I---------~i~g~~~~~~~~~~--~~~~i~~v~Q~ 268 (602)
.++++| .+.+| ++++|+|+||||||||+|+|+|+++|++|++ .++|.++....... .+..+++++|.
T Consensus 107 ~l~~vs-~i~~G-e~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~ 184 (607)
T 3bk7_A 107 VLYRLP-IVKDG-MVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQY 184 (607)
T ss_dssp EEECCC-CCCTT-SEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSC
T ss_pred eeCCCC-CCCCC-CEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeech
Confidence 566777 66666 9999999999999999999999999999995 23444332110011 12246666664
Q ss_pred chhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcC
Q psy3001 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETV 348 (602)
Q Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l 348 (602)
..... ..+ ..++.+++.. . ....+..+.++.++..........+|
T Consensus 185 ~~~~~-------~~~-------------------~~tv~e~l~~--~-------~~~~~~~~~L~~lgL~~~~~~~~~~L 229 (607)
T 3bk7_A 185 VDLLP-------KAV-------------------KGKVRELLKK--V-------DEVGKFEEVVKELELENVLDRELHQL 229 (607)
T ss_dssp GGGGG-------GTC-------------------CSBHHHHHHH--T-------CCSSCHHHHHHHTTCTTGGGSBGGGC
T ss_pred hhhch-------hhc-------------------cccHHHHhhh--h-------HHHHHHHHHHHHcCCCchhCCChhhC
Confidence 21100 000 0011110000 0 00011122233455555556666778
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|||+||||++.+.. ||+|++|+++. .
T Consensus 230 S--GGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~-~ 306 (607)
T 3bk7_A 230 S--GGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEP-G 306 (607)
T ss_dssp C--HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCT-T
T ss_pred C--HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCc-c
Confidence 8 699999999999999999999999999999999999999998874 47999999999999987 99999998642 1
Q ss_pred eecChhHHhhcchhHHHHHHHhh---hhhHHHH----H-HHhh----hh-hHHHHHHHHHHHhcccccccceeeEEecce
Q psy3001 427 EFDSPSVLMKNKASIFYSMAKDA---GLAWLAV----R-LETV----GN-LITFSAALLAVLSKETLNAGLVGLSVSYAM 493 (602)
Q Consensus 427 ~~g~~~~l~~~~~~~~~~~~~~~---~~~~~~~----~-~~~~----~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge 493 (602)
.+|....-..........+.... ....... . ..+. .. .+.+.... ..-....+..++|++++||
T Consensus 307 ~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~---~~~~~~~l~~~~~~v~~Ge 383 (607)
T 3bk7_A 307 VYGIFSKPKGTRNGINEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLV---KDYGSFKLEVEPGEIRKGE 383 (607)
T ss_dssp TEEEECCCEEHHHHHHHHHHTEETTTTEECCSSCCCCCCSTTSCCCCCCEEEEECCEE---EECSSCEEEECCEEEETTC
T ss_pred ccceeccchhHHHHHHHHHhhcchhhhhhccccccccccCCCcccccCceEEEEeceE---EEecceEEEecccccCCCC
Confidence 22211000000000000000000 0000000 0 0000 00 00000000 0001123345677789999
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCCC--CC-CcHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDPV--GE-SSDE 569 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~~--~~-~~~~ 569 (602)
++||+|+||||||||+++|+|+++|++|+|.++ .+++|+||++.. +..||.+++... .. ...+
T Consensus 384 i~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~ 450 (607)
T 3bk7_A 384 VIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNF 450 (607)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCEEEECSSCCCCCSSBHHHHHHHHHHHHHHCHH
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEEEEEecCccCCCCCcHHHHHHhhhccCCCHHH
Confidence 999999999999999999999999999999862 369999999965 566998887432 11 1345
Q ss_pred HHHHHHHHcCCCccccccccC
Q psy3001 570 AIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 570 ~i~~al~~~~l~~~~~~~~~~ 590 (602)
.+.++++.+++.++.++.|..
T Consensus 451 ~~~~~l~~~~l~~~~~~~~~~ 471 (607)
T 3bk7_A 451 YKTELLKPLGIIDLYDRNVED 471 (607)
T ss_dssp HHHHTHHHHTCTTTTTSBGGG
T ss_pred HHHHHHHHcCCchHhcCChhh
Confidence 688999999998776665543
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-44 Score=387.67 Aligned_cols=336 Identities=16% Similarity=0.201 Sum_probs=201.0
Q ss_pred EEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE-----------EECCeecCCCChHHHhhccce--ecccchh
Q psy3001 205 KVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI-----------IIDGVDIRTLGLHTLRSRLTI--IPQVLAT 271 (602)
Q Consensus 205 s~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I-----------~i~g~~~~~~~~~~~~~~i~~--v~Q~~~~ 271 (602)
.+...+.++++||+||||||||||+|+|+|+++|++|+| .++|.++..+......+..++ ..|....
T Consensus 18 ~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~ 97 (538)
T 3ozx_A 18 GLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEY 97 (538)
T ss_dssp CCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTG
T ss_pred CCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhh
Confidence 333333349999999999999999999999999999998 344443321111111111111 1111000
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. +.+ +...+.+. .. ......+..+.++.++...........||
T Consensus 98 ~-------~~~-------------------~~~~v~~~--------l~-~~~~~~~~~~~l~~l~l~~~~~~~~~~LS-- 140 (538)
T 3ozx_A 98 A-------SKF-------------------LKGTVNEI--------LT-KIDERGKKDEVKELLNMTNLWNKDANILS-- 140 (538)
T ss_dssp G-------GTT-------------------CCSBHHHH--------HH-HHCCSSCHHHHHHHTTCGGGTTSBGGGCC--
T ss_pred h-------hhh-------------------ccCcHHHH--------hh-cchhHHHHHHHHHHcCCchhhcCChhhCC--
Confidence 0 000 00000000 00 00000011122223333334455556677
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||||+|||||+.+|++|||||||++||+.+..++.+.|+++.+++|||+||||++++.. ||+|++|++|... ++.
T Consensus 141 gGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~~~-~g~ 219 (538)
T 3ozx_A 141 GGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSV-YGR 219 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEETTT-EEE
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCccc-ccc
Confidence 69999999999999999999999999999999999999999998778999999999999988 9999999875422 111
Q ss_pred hhHHhhcchhHHHHHHHh---hhhhHHHHHHH-hhhhhHH--HHHHHHHHHhc-------ccccccceeeEEecceeEEE
Q psy3001 431 PSVLMKNKASIFYSMAKD---AGLAWLAVRLE-TVGNLIT--FSAALLAVLSK-------ETLNAGLVGLSVSYAMQVGI 497 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~~~~---~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~-------~~~~~~~~~l~i~~Ge~v~i 497 (602)
...-..........+... ........... ....... ........+.. ....+...+|++++||++||
T Consensus 220 ~~~~~~~~~~~~~~~~g~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~l~~~~~~i~~Gei~~i 299 (538)
T 3ozx_A 220 VSKSYAARVGINNFLKGYLPAENMKIRPDEIKFMLKEVSDLDLSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGI 299 (538)
T ss_dssp ECCCEEHHHHHHHHHHTEETTTTEECSSSCCCCSCC----------CCEEEEECCEEEEETTEEEEECCEEEETTCEEEE
T ss_pred cchhhhHHHHHHHHHhhhchhhhhhccchhhhccccccccccccccccceEEEcceEEEECCEEEEeccceECCCCEEEE
Confidence 000000000000000000 00000000000 0000000 00000000000 11223345778999999999
Q ss_pred ECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhcccCC---C-CCCcHHHHH
Q psy3001 498 VGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNLDP---V-GESSDEAIW 572 (602)
Q Consensus 498 vG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl~~---~-~~~~~~~i~ 572 (602)
+|+||||||||+++|+|+++|++|+|.+++ ..++|+||++.. +..||++|+.. . .....+.+.
T Consensus 300 ~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~ 367 (538)
T 3ozx_A 300 LGPNGIGKTTFARILVGEITADEGSVTPEK------------QILSYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFE 367 (538)
T ss_dssp ECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEEEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHH
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeEeechhcccccCCCHHHHHHHhhhhccchhHHHHH
Confidence 999999999999999999999999999876 368999999864 56799998742 1 112345678
Q ss_pred HHHHHcCCCccccccccC
Q psy3001 573 KALELAHLNTFVSNLPAR 590 (602)
Q Consensus 573 ~al~~~~l~~~~~~~~~~ 590 (602)
++++.+++.++.++.|..
T Consensus 368 ~~l~~~~l~~~~~~~~~~ 385 (538)
T 3ozx_A 368 EVTKRLNLHRLLESNVND 385 (538)
T ss_dssp HTTTTTTGGGCTTSBGGG
T ss_pred HHHHHcCCHHHhcCChhh
Confidence 899999998876666553
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-43 Score=398.57 Aligned_cols=277 Identities=18% Similarity=0.263 Sum_probs=179.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| ++++|+|+||||||||+|+|+| |+| +|.+... ...++|++|++...+
T Consensus 447 ~~~iL~~vsl~I~~G-e~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~~~~v~q~~~~~~--- 508 (986)
T 2iw3_A 447 AKILLNKTQLRLKRA-RRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECRTVYVEHDIDGTH--- 508 (986)
T ss_dssp TEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSCEEETTCCCCCCC---
T ss_pred CEEeEecceEEEcCC-CEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------ceeEEEEcccccccc---
Confidence 346788899998888 9999999999999999999996 443 4433211 113567777521100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
+ ..++.+.+..... .. ..+..+.++.++.. .........|| ||||
T Consensus 509 ---~----------------------~ltv~e~l~~~~~-~~------~~~v~~~L~~lgL~~~~~~~~~~~LS--GGqk 554 (986)
T 2iw3_A 509 ---S----------------------DTSVLDFVFESGV-GT------KEAIKDKLIEFGFTDEMIAMPISALS--GGWK 554 (986)
T ss_dssp ---T----------------------TSBHHHHHHTTCS-SC------HHHHHHHHHHTTCCHHHHHSBGGGCC--HHHH
T ss_pred ---c----------------------CCcHHHHHHHhhc-CH------HHHHHHHHHHcCCChhhhcCCcccCC--HHHH
Confidence 0 0001111000000 00 11122223333332 22344455677 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEE-eecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVV-EFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~-~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+..++.+.|++ .++|+|+|||+++++.. ||+|++|++|+++ ..|++++
T Consensus 555 QRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e 632 (986)
T 2iw3_A 555 MKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTE 632 (986)
T ss_dssp HHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHH
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHH
Confidence 999999999999999999999999999999999999988 58999999999999988 9999999999997 5788888
Q ss_pred Hhhcchh--HHHHHHH-hhhhhHHHHH-HHh---hhh-hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCCh
Q psy3001 434 LMKNKAS--IFYSMAK-DAGLAWLAVR-LET---VGN-LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGK 505 (602)
Q Consensus 434 l~~~~~~--~~~~~~~-~~~~~~~~~~-~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGK 505 (602)
+...... .++.... .....+.... ... ... .+.+.+..+.|.......+.++||++++||++||+|+|||||
T Consensus 633 ~~~~~~~~~~~~~l~~~~~~~~~p~~~~~~~~~~~~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGK 712 (986)
T 2iw3_A 633 FVKKCPAAKAYEELSNTDLEFKFPEPGYLEGVKTKQKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGK 712 (986)
T ss_dssp HHHHCGGGGGSSSTTTCCCCCCCCCCCCCTTCCSTTSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHH
T ss_pred HHhhhHHHHHHHhhhhhhhhccccccccccccccCCCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCH
Confidence 7642111 0110000 0000000000 000 000 001111111111111223567999999999999999999999
Q ss_pred HHHHHHHHhccCCCCceEEECC
Q psy3001 506 SSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 506 STLl~~L~g~~~~~~G~I~i~g 527 (602)
|||+|+|+|+++|++|+|.++|
T Consensus 713 STLLklLaGll~P~sG~I~~~~ 734 (986)
T 2iw3_A 713 STLINVLTGELLPTSGEVYTHE 734 (986)
T ss_dssp HHHHHHHTTSSCCSEEEEEECT
T ss_pred HHHHHHHhCCCCCCceEEEEcC
Confidence 9999999999999999999986
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-41 Score=344.29 Aligned_cols=211 Identities=24% Similarity=0.373 Sum_probs=163.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~~ 275 (602)
..++||||++.+| +++||+||||||||||+|+|+|+++|++|+|.++|+++..++... +|+.|+||||++..
T Consensus 42 ~aL~~vsl~i~~G-ei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l---- 116 (366)
T 3tui_C 42 QALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL---- 116 (366)
T ss_dssp EEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCC----
T ss_pred EEEEeeEEEEcCC-CEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCcc----
Confidence 4677777777777 999999999999999999999999999999999999999988765 47889999997421
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+ ...++.+++.... ..... ......+..+.++.+++.........+|| |||
T Consensus 117 -------~------------------~~~TV~env~~~~~~~~~~-~~~~~~~v~~lL~~vgL~~~~~~~~~~LS--GGq 168 (366)
T 3tui_C 117 -------L------------------SSRTVFGNVALPLELDNTP-KDEVKRRVTELLSLVGLGDKHDSYPSNLS--GGQ 168 (366)
T ss_dssp -------C------------------TTSCHHHHHHHHHHHSCCC-HHHHHHHHHHHHHHHTCGGGTTCCTTTSC--HHH
T ss_pred -------C------------------CCCCHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHcCCchHhcCChhhCC--HHH
Confidence 1 0001111111000 00000 01111223333445555556677778888 599
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|||+|||+++.+.. ||||++|++|++++.|++
T Consensus 169 kQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~ 248 (366)
T 3tui_C 169 KQRVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 248 (366)
T ss_dssp HHHHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBH
T ss_pred HHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998743 7999999999999988 999999999999999999
Q ss_pred hHHhhcchhHH
Q psy3001 432 SVLMKNKASIF 442 (602)
Q Consensus 432 ~~l~~~~~~~~ 442 (602)
++++..+...+
T Consensus 249 ~ev~~~p~~~~ 259 (366)
T 3tui_C 249 SEVFSHPKTPL 259 (366)
T ss_dssp HHHHSSCCSHH
T ss_pred HHHHhCCCcHH
Confidence 99987654433
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-42 Score=374.99 Aligned_cols=241 Identities=16% Similarity=0.179 Sum_probs=159.7
Q ss_pred HHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccc
Q psy3001 331 RLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLN 409 (602)
Q Consensus 331 ~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~ 409 (602)
.++.++...........|| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||+|||+++
T Consensus 205 ~l~~~gl~~~~~~~~~~LS--gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~ 282 (608)
T 3j16_B 205 YIKILQLENVLKRDIEKLS--GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLS 282 (608)
T ss_dssp HHHHHTCTGGGGSCTTTCC--HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHH
T ss_pred HHHHcCCcchhCCChHHCC--HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 3344555555666677788 6999999999999999999999999999999999999999998754 799999999999
Q ss_pred cccc-CCeEEEEeCceEEeec--ChhHHhhcchhHHHHHHHhh----hhhHHHH----HHHhhhhhHHH--HHHHHHHHh
Q psy3001 410 TIID-SDRVLVLDKGLVVEFD--SPSVLMKNKASIFYSMAKDA----GLAWLAV----RLETVGNLITF--SAALLAVLS 476 (602)
Q Consensus 410 ~i~~-~d~i~~l~~G~i~~~g--~~~~l~~~~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~--~~~~~~~~~ 476 (602)
++.. ||+|++|++|..+... .+.... .. ........ ....... ........... ......+ .
T Consensus 283 ~~~~~~drv~vl~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y-~ 357 (608)
T 3j16_B 283 VLDYLSDFVCIIYGVPSVYGVVTLPASVR---EG-INIFLDGHIPAENLRFRTEALQFRIADATEDLQNDSASRAFSY-P 357 (608)
T ss_dssp HHHHHCSEEEEEESCTTTEEEECCCEEHH---HH-HHHHHHTEETTTTEECSSSCCCCCCSSSSCCCCCCSSSSCCEE-C
T ss_pred HHHHhCCEEEEEeCCccccceecCchhHH---HH-HHHhhccccchhhhccccccccccccccccceeeeccceeEEe-c
Confidence 9988 9999999876532110 000000 00 00000000 0000000 00000000000 0000000 0
Q ss_pred cccccccceeeEEecc-----eeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-
Q psy3001 477 KETLNAGLVGLSVSYA-----MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV- 550 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~G-----e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~- 550 (602)
......++++|++.+| |++||+|+||||||||+++|+|+++|++|+. +. +.+++|+||++.
T Consensus 358 ~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~ 424 (608)
T 3j16_B 358 SLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAP 424 (608)
T ss_dssp CEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCC
T ss_pred CcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccc
Confidence 0011234688999888 7899999999999999999999999999972 11 346999999985
Q ss_pred ccccchhcccC--C-CCCCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 551 LFSGTLRLNLD--P-VGESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 551 lf~~Tv~~nl~--~-~~~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
.|..||++|+. . ......+...++++.+++.++.++.|..|
T Consensus 425 ~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~L 468 (608)
T 3j16_B 425 KFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDDIIDQEVQHL 468 (608)
T ss_dssp CCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTTTSSSBSSSC
T ss_pred cCCccHHHHHHHHhhcccccHHHHHHHHHHcCChhhhcCChhhC
Confidence 46779998863 1 12234566888999999988776665543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-41 Score=334.11 Aligned_cols=206 Identities=22% Similarity=0.319 Sum_probs=161.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+++.++|+||++..++
T Consensus 21 ~~~L~~isl~i~~G-e~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~-- 97 (275)
T 3gfo_A 21 THALKGINMNIKRG-EVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQL-- 97 (275)
T ss_dssp CEEEEEEEEEEETT-SEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTC--
T ss_pred CeEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCccccc--
Confidence 34899999999998 999999999999999999999999999999999999984 2334567899999999864221
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ ..++.+++... ......+.. .+..+.++.++...........|| |
T Consensus 98 -------~-------------------~~tv~e~l~~~~~~~~~~~~~~~---~~~~~~l~~~~L~~~~~~~~~~LS--g 146 (275)
T 3gfo_A 98 -------F-------------------SASVYQDVSFGAVNMKLPEDEIR---KRVDNALKRTGIEHLKDKPTHCLS--F 146 (275)
T ss_dssp -------C-------------------SSBHHHHHHHHHHTSCCCHHHHH---HHHHHHHHHTTCGGGTTSBGGGSC--H
T ss_pred -------c-------------------cCcHHHHHHHHHHHcCCCHHHHH---HHHHHHHHHcCCchhhcCCcccCC--H
Confidence 0 00111110000 000011111 222333445555555666677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.++++. + |+|||+|||+++.+.. ||||++|++|++++.|
T Consensus 147 GqkQRv~iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g 226 (275)
T 3gfo_A 147 GQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQG 226 (275)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999998875 3 8999999999999987 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 227 ~~~~~~~~ 234 (275)
T 3gfo_A 227 NPKEVFAE 234 (275)
T ss_dssp CHHHHTHH
T ss_pred CHHHHhcC
Confidence 99998764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-42 Score=384.96 Aligned_cols=311 Identities=20% Similarity=0.251 Sum_probs=180.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHH---------------------HHHhcccCCC-------CceEEECCeecC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLT---------------------LALFRIIEPA-------DGTIIIDGVDIR 251 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~---------------------~ll~g~~~~~-------~G~I~i~g~~~~ 251 (602)
.++||||++++| +++||+||||||||||+ +++.|+..|+ .|.|.+++.+..
T Consensus 33 ~L~~vsl~i~~G-e~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~~ 111 (670)
T 3ux8_A 33 NLKNIDVEIPRG-KLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTTS 111 (670)
T ss_dssp TCCSEEEEEETT-SEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC--
T ss_pred ceeccEEEECCC-CEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchhh
Confidence 489999999998 99999999999999998 8999999998 455556665443
Q ss_pred CCChHHHhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc----cc---ch-hHHHHH
Q psy3001 252 TLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FC---SN-LQRFYV 323 (602)
Q Consensus 252 ~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~-~~~~~~ 323 (602)
. ..++.+++++|.+...-.........+ ...........++.+++... .. .. ......
T Consensus 112 ~----~~~~~ig~v~q~~~~~~~~~~~~~~~~----------~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~ 177 (670)
T 3ux8_A 112 R----NPRSTVGTVTEIYDYLRLLFARIGRLV----------GGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILR 177 (670)
T ss_dssp -------CCBHHHHTTCC-----------------------------------CC-------------------------
T ss_pred c----cchhceeeeechhhhHHHHHhhhcccc----------cccccccccCCcHHHHHHHhhccccchhhhHHHHHHHH
Confidence 2 224567777775332110000000000 00000000000111110000 00 00 000000
Q ss_pred HHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhc-ccc
Q psy3001 324 ATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEF-AHC 399 (602)
Q Consensus 324 ~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~ 399 (602)
...+..+.++.++.... ......+|| |||||||+|||||+.+|+ +|||||||++||+.+..++.+.|+++. ++.
T Consensus 178 ~~~~~~~~l~~~gL~~~~~~~~~~~LS--GGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~ 255 (670)
T 3ux8_A 178 EIRDRLGFLQNVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGN 255 (670)
T ss_dssp -CHHHHHHHHHTTCTTCCTTCBGGGSC--HHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCCchhhhcCCcccCC--HHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCC
Confidence 11111222334444332 345566777 699999999999999998 999999999999999999999998874 479
Q ss_pred EEEEeeecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHH
Q psy3001 400 TVLTIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLA 473 (602)
Q Consensus 400 tvi~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 473 (602)
|||+|||+++.+..||+|++| ++|++++.|+++++.......+........ +.. ..............
T Consensus 256 tvi~vtHd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~ 329 (670)
T 3ux8_A 256 TLIVVEHDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKK--FIP----IPAERRRPDGRWLE 329 (670)
T ss_dssp EEEEECCCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHHHHHTTSS--CCC----CCSSCCCCCSCEEE
T ss_pred EEEEEeCCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHHHHhcccc--ccc----ccccccccccccee
Confidence 999999999987679999999 899999999999987654332222111100 000 00000000000000
Q ss_pred HHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHH----------------------hccCCCCceEEECCeecC
Q psy3001 474 VLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF----------------------RIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 474 ~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~----------------------g~~~~~~G~I~i~g~~i~ 531 (602)
+.......++++||+|++||++||+||||||||||+++|+ |+.. .+|.|.+++.++.
T Consensus 330 ~~~~~~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~-~~~~i~~~~~~~~ 408 (670)
T 3ux8_A 330 VVGAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEH-LDKVIDIDQSPIG 408 (670)
T ss_dssp EEEECSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGG-CSEEEECCSSCSC
T ss_pred ecCccccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhcccccccccccccccc-cCceeEeccccCC
Confidence 0011122356899999999999999999999999998754 3333 3468889988876
Q ss_pred CCC
Q psy3001 532 TLG 534 (602)
Q Consensus 532 ~~~ 534 (602)
..+
T Consensus 409 ~~~ 411 (670)
T 3ux8_A 409 RTP 411 (670)
T ss_dssp SST
T ss_pred CCC
Confidence 544
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=321.18 Aligned_cols=214 Identities=31% Similarity=0.485 Sum_probs=161.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+||++.
T Consensus 22 ~~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~------- 93 (247)
T 2ff7_A 22 PVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNV------- 93 (247)
T ss_dssp CEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCC-------
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCc-------
Confidence 45799999999988 9999999999999999999999999999999999999998888888999999999742
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHH-HH-HHHhhc--ccCCcccccCCcCCCCh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSR-QL-KRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~-~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
++ .. ++.+++.... ............. .+ +.+... +........+.++| |
T Consensus 94 ----l~-------------~~------tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS--g 148 (247)
T 2ff7_A 94 ----LL-------------NR------SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLS--G 148 (247)
T ss_dssp ----CT-------------TS------BHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCC--H
T ss_pred ----cc-------------cc------cHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCC--H
Confidence 11 00 1111111000 0000011000000 00 111111 12223444556777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
|||||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|+++
T Consensus 149 Gq~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 228 (247)
T 2ff7_A 149 GQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHK 228 (247)
T ss_dssp HHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999998876689999999999998779999999999999999999
Q ss_pred HHhhcchhHHHH
Q psy3001 433 VLMKNKASIFYS 444 (602)
Q Consensus 433 ~l~~~~~~~~~~ 444 (602)
+++..+...|..
T Consensus 229 ~l~~~~~~~~~~ 240 (247)
T 2ff7_A 229 ELLSEPESLYSY 240 (247)
T ss_dssp HHHTSTTCHHHH
T ss_pred HHHhCCchHHHH
Confidence 987653444443
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-40 Score=320.79 Aligned_cols=204 Identities=23% Similarity=0.313 Sum_probs=154.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++..++...+ ++.++|++|++..
T Consensus 18 ~~~L~~isl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l-- 94 (235)
T 3tif_A 18 IYALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNL-- 94 (235)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCC--
T ss_pred eeeEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCcc--
Confidence 35799999999998 9999999999999999999999999999999999999999887654 4579999998421
Q ss_pred hhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcC
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETV 348 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~l 348 (602)
+. . .++.+++... ...... ......+..+.++.++.... .......|
T Consensus 95 ---------~~------------~------~tv~enl~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 146 (235)
T 3tif_A 95 ---------IP------------L------LTALENVELPLIFKYRGAMS-GEERRKRALECLKMAELEERFANHKPNQL 146 (235)
T ss_dssp ---------CT------------T------SCHHHHHHHHHHTCSSSCCC-HHHHHHHHHHHHHHTTCCGGGTTCCGGGS
T ss_pred ---------CC------------C------CcHHHHHHHHHHhhhccCCC-HHHHHHHHHHHHHHCCCChhhhhCChhhC
Confidence 10 0 0111110000 000000 00111222333334444432 25567778
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.++++. + ++|||+|||+++.+..||+|++|++|+++
T Consensus 147 S--gGq~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~ 224 (235)
T 3tif_A 147 S--GGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVE 224 (235)
T ss_dssp C--HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEE
T ss_pred C--HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEE
Confidence 8 699999999999999999999999999999999999999998874 3 79999999999966459999999999999
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
+.++.+++
T Consensus 225 ~~~~~~~~ 232 (235)
T 3tif_A 225 REEKLRGF 232 (235)
T ss_dssp EEEECC--
T ss_pred EEcChhhh
Confidence 98876654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-40 Score=325.01 Aligned_cols=205 Identities=22% Similarity=0.290 Sum_probs=161.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| +++||+||||||||||+|+|+|+++|++|+|.++|+++...+...+++.+++++|++...+
T Consensus 23 ~~~vL~~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~--- 98 (266)
T 4g1u_C 23 QQALINDVSLHIASG-EMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAF--- 98 (266)
T ss_dssp TEEEEEEEEEEEETT-CEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCS---
T ss_pred CeeEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCC---
Confidence 356799999999998 9999999999999999999999999999999999999999999999999999999743211
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
..++.+++..... ........ +..+.++.++...........|| ||||
T Consensus 99 --------------------------~~tv~e~l~~~~~~~~~~~~~~---~~~~~l~~~~l~~~~~~~~~~LS--gGq~ 147 (266)
T 4g1u_C 99 --------------------------PFSVSEVIQMGRAPYGGSQDRQ---ALQQVMAQTDCLALAQRDYRVLS--GGEQ 147 (266)
T ss_dssp --------------------------CCBHHHHHHGGGTTSCSTTHHH---HHHHHHHHTTCSTTTTSBGGGCC--HHHH
T ss_pred --------------------------CCCHHHHHHhhhhhcCcHHHHH---HHHHHHHHcCChhHhcCCcccCC--HHHH
Confidence 0011111100000 00001111 22223334455555556666788 6999
Q ss_pred HHHHHHHHHhh------CCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 356 QLICLARALLR------KTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 356 Qrl~lAral~~------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
||++|||||+. +|++|||||||++||+.++..+.+.++++. + ++|+|+|||+++.+.. ||||++|++|+++
T Consensus 148 QRv~iAraL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~ 227 (266)
T 4g1u_C 148 QRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLV 227 (266)
T ss_dssp HHHHHHHHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred HHHHHHHHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEE
Confidence 99999999999 999999999999999999999999998874 3 4799999999999987 9999999999999
Q ss_pred eecChhHHhh
Q psy3001 427 EFDSPSVLMK 436 (602)
Q Consensus 427 ~~g~~~~l~~ 436 (602)
+.|++++++.
T Consensus 228 ~~g~~~~~~~ 237 (266)
T 4g1u_C 228 ACGTPEEVLN 237 (266)
T ss_dssp EEECHHHHCC
T ss_pred EEcCHHHHhC
Confidence 9999988764
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-39 Score=336.82 Aligned_cols=211 Identities=21% Similarity=0.269 Sum_probs=165.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| |+++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.|+||+|++.
T Consensus 16 ~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~------- 85 (381)
T 3rlf_A 16 VVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYA------- 85 (381)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCC-------
T ss_pred EEEEeeeEEEECCC-CEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCc-------
Confidence 45799999999998 99999999999999999999999999999999999999887765 467999999742
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+| ...++.+++..... .... ......+..+.++.+++.........+|| |||||
T Consensus 86 ----l~------------------p~ltV~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~L~~~~~r~p~~LS--GGqrQ 140 (381)
T 3rlf_A 86 ----LY------------------PHLSVAENMSFGLKLAGAK-KEVINQRVNQVAEVLQLAHLLDRKPKALS--GGQRQ 140 (381)
T ss_dssp ----CC------------------TTSCHHHHHTHHHHHTTCC-HHHHHHHHHHHHHHTTCGGGTTCCGGGSC--HHHHH
T ss_pred ----CC------------------CCCCHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCCchhhcCChhHCC--HHHHH
Confidence 11 00111111111000 0000 01111223334445566666677788888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++||||||||+||+..+..+.+.|+++. + +.|+|+|||+++++.. ||||++|++|++++.|++++
T Consensus 141 RVaiArAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~ 220 (381)
T 3rlf_A 141 RVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLE 220 (381)
T ss_dssp HHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 9999999999999999999999999999999999998874 3 7999999999999988 99999999999999999999
Q ss_pred HhhcchhHHH
Q psy3001 434 LMKNKASIFY 443 (602)
Q Consensus 434 l~~~~~~~~~ 443 (602)
++..+...|.
T Consensus 221 l~~~p~~~~v 230 (381)
T 3rlf_A 221 LYHYPADRFV 230 (381)
T ss_dssp HHHCCSBHHH
T ss_pred HHhCCccHHH
Confidence 9876554443
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-39 Score=334.07 Aligned_cols=208 Identities=23% Similarity=0.312 Sum_probs=160.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCC--ChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~--~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| |+++|+||||||||||+|+|+|+++|++|+|.++|+++... .....++.++||+|++.
T Consensus 17 ~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~----- 90 (359)
T 3fvq_A 17 TPVLNDISLSLDPG-EILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGV----- 90 (359)
T ss_dssp EEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCC-----
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCc-----
Confidence 45799999999998 99999999999999999999999999999999999998321 22345678999999732
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccccc---chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC---SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+|. ..++.+++..... ....... .+..+.++.+++..........|| |
T Consensus 91 ------l~p------------------~ltV~eni~~~l~~~~~~~~~~~---~~v~~~l~~~gL~~~~~r~~~~LS--G 141 (359)
T 3fvq_A 91 ------LFP------------------HLTVYRNIAYGLGNGKGRTAQER---QRIEAMLELTGISELAGRYPHELS--G 141 (359)
T ss_dssp ------CCT------------------TSCHHHHHHTTSTTSSCCSHHHH---HHHHHHHHHHTCGGGTTSCGGGSC--H
T ss_pred ------CCC------------------CCCHHHHHHHHHHHcCCChHHHH---HHHHHHHHHcCCchHhcCChhhCC--H
Confidence 110 0111111111000 0011111 222333445555566677778888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||+|||||+.+|++||||||||+||+..+..+.+.+++.. .++|+|+|||+++++.. ||||++|++|+++..|
T Consensus 142 Gq~QRValArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g 221 (359)
T 3fvq_A 142 GQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTA 221 (359)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999988776642 47999999999999988 9999999999999999
Q ss_pred ChhHHhhcchh
Q psy3001 430 SPSVLMKNKAS 440 (602)
Q Consensus 430 ~~~~l~~~~~~ 440 (602)
++++++..+..
T Consensus 222 ~~~el~~~p~~ 232 (359)
T 3fvq_A 222 SPHELYRQPAD 232 (359)
T ss_dssp CHHHHHHSCSC
T ss_pred CHHHHHhCccc
Confidence 99999876543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-39 Score=322.30 Aligned_cols=213 Identities=24% Similarity=0.359 Sum_probs=160.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+++.|+|+||++.
T Consensus 33 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~-------- 103 (271)
T 2ixe_A 33 QVLQGLTFTLYPG-KVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPL-------- 103 (271)
T ss_dssp CCEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCC--------
T ss_pred eeeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCc--------
Confidence 4688888888887 9999999999999999999999999999999999999988888888899999999742
Q ss_pred CceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHH--HHHHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVAT--SRQLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
+| .. ++.+++... ............ ....+.++.+ +........+.+|| |
T Consensus 104 ---l~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LS--g 159 (271)
T 2ixe_A 104 ---LF-------------GR------SFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLS--G 159 (271)
T ss_dssp ---CC-------------SS------BHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSC--H
T ss_pred ---cc-------------cc------cHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCC--H
Confidence 22 10 111111100 000001110000 0111122222 33334555667788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|||+|||+++.+..||+|++|++|++++.|+
T Consensus 160 Gq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~ 239 (271)
T 2ixe_A 160 GQRQAVALARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239 (271)
T ss_dssp HHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999998753 799999999999887799999999999999999
Q ss_pred hhHHhhcchhHHHHH
Q psy3001 431 PSVLMKNKASIFYSM 445 (602)
Q Consensus 431 ~~~l~~~~~~~~~~~ 445 (602)
+++++.. ...|...
T Consensus 240 ~~~l~~~-~~~~~~~ 253 (271)
T 2ixe_A 240 HLQLMER-GGCYRSM 253 (271)
T ss_dssp HHHHHHH-TSHHHHH
T ss_pred HHHHHhC-cHHHHHH
Confidence 9988764 3444433
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-39 Score=319.34 Aligned_cols=207 Identities=27% Similarity=0.398 Sum_probs=157.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ......+++.++|++|++..
T Consensus 37 ~~vL~~vsl~i~~G-ei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l---- 111 (263)
T 2olj_A 37 LEVLKGINVHIREG-EVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNL---- 111 (263)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCC----
T ss_pred EEEEEeeEEEEcCC-CEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcC----
Confidence 34788888888888 999999999999999999999999999999999999985 33455678899999997321
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..++.+++... ....... .....+..+.++.++..........+|| ||
T Consensus 112 -------~~------------------~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~~~~~~LS--gG 163 (263)
T 2olj_A 112 -------FP------------------HMTVLNNITLAPMKVRKWPR-EKAEAKAMELLDKVGLKDKAHAYPDSLS--GG 163 (263)
T ss_dssp -------CT------------------TSCHHHHHHHHHHHTSCCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HH
T ss_pred -------CC------------------CCCHHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCCchHhcCChhhCC--HH
Confidence 10 00111111000 0000000 0011122233344555445556667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|++
T Consensus 164 qkQRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 243 (263)
T 2olj_A 164 QAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKP 243 (263)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999998874 47999999999999987 999999999999999999
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
++++..
T Consensus 244 ~~~~~~ 249 (263)
T 2olj_A 244 EDLFDR 249 (263)
T ss_dssp HHHHHS
T ss_pred HHHHhC
Confidence 888764
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-39 Score=317.35 Aligned_cols=204 Identities=20% Similarity=0.282 Sum_probs=155.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH-HHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~-~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .+++.++|++|++....
T Consensus 20 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~--- 95 (257)
T 1g6h_A 20 FKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLK--- 95 (257)
T ss_dssp EEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGG---
T ss_pred EeeEeeeEEEEeCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCC---
Confidence 35788899998888 99999999999999999999999999999999999999876643 45778999999853210
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-c--chh----------HHHHHHHHHHHHHHhhcccCCcccc
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-C--SNL----------QRFYVATSRQLKRLESVSRSPIYSH 343 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~----------~~~~~~~~~~~~~l~~~~~~~~~~~ 343 (602)
.. ++.+++.... . ... ........+..+.++.++.......
T Consensus 96 --------------------~~------tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 149 (257)
T 1g6h_A 96 --------------------EM------TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDR 149 (257)
T ss_dssp --------------------GS------BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTS
T ss_pred --------------------CC------cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCC
Confidence 00 0111100000 0 000 0000011122233344555555566
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeeccccccc-CCeEEEEe
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
...+|| ||||||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|||++||+++.+.. ||++++|+
T Consensus 150 ~~~~LS--gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~ 227 (257)
T 1g6h_A 150 KAGELS--GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMF 227 (257)
T ss_dssp BGGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEE
T ss_pred CchhCC--HHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEE
Confidence 677788 6999999999999999999999999999999999999999988743 7999999999999987 99999999
Q ss_pred CceEEeecChhH
Q psy3001 422 KGLVVEFDSPSV 433 (602)
Q Consensus 422 ~G~i~~~g~~~~ 433 (602)
+|++++.|++++
T Consensus 228 ~G~i~~~g~~~~ 239 (257)
T 1g6h_A 228 NGQIIAEGRGEE 239 (257)
T ss_dssp TTEEEEEEESHH
T ss_pred CCEEEEEeCHHH
Confidence 999999998887
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=328.33 Aligned_cols=207 Identities=20% Similarity=0.344 Sum_probs=161.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 85 (359)
T 2yyz_A 16 VKAVDGVSFEVKDG-EFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYA------- 85 (359)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCC-------
T ss_pred EEEEeeeEEEEcCC-CEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcc-------
Confidence 45799999999998 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++.... ...... .....+..+.++.+++.........+|| |||||
T Consensus 86 ----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--gGq~Q 140 (359)
T 2yyz_A 86 ----LYP------------------HMTVFENIAFPLRARRISK-DEVEKRVVEIARKLLIDNLLDRKPTQLS--GGQQQ 140 (359)
T ss_dssp ----CCT------------------TSCHHHHHHGGGSSSCSHH-HHTTHHHHHHHHHTTCGGGTTSCGGGSC--HHHHH
T ss_pred ----cCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchHhcCChhhCC--HHHHH
Confidence 110 001111111100 000000 0111223334445555555666777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
|++|||||+.+|++|+||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+++..|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~ 220 (359)
T 2yyz_A 141 RVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDE 220 (359)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988643 7999999999999977 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 221 l~~~p~ 226 (359)
T 2yyz_A 221 VYDSPK 226 (359)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 887643
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-38 Score=309.82 Aligned_cols=200 Identities=22% Similarity=0.267 Sum_probs=153.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hh-hccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~-~~i~~v~Q~~~~~~ 273 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+... ++ +.++|++|++..
T Consensus 17 ~~~l~~vsl~i~~G-e~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l-- 93 (224)
T 2pcj_A 17 YEILKGISLSVKKG-EFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYL-- 93 (224)
T ss_dssp EEEEEEEEEEEETT-CEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCC--
T ss_pred EeeEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCccc--
Confidence 45799999999998 999999999999999999999999999999999999998776543 33 789999997421
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+ ...++.+++.... ...... .....+..+.++.++..+.......+|| |
T Consensus 94 ---------~------------------~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--g 143 (224)
T 2pcj_A 94 ---------I------------------PELTALENVIVPMLKMGKPK-KEAKERGEYLLSELGLGDKLSRKPYELS--G 143 (224)
T ss_dssp ---------C------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTCTTCCGGGSC--H
T ss_pred ---------C------------------CCCCHHHHHHhHHHHcCCCH-HHHHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 1 0001111110000 000000 0111222333445555555666677788 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
|||||++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||++||+++.+..||++++|++|++++.|+
T Consensus 144 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 144 GEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHHHHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999999998874 4799999999999884499999999999998775
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.9e-39 Score=315.42 Aligned_cols=205 Identities=19% Similarity=0.272 Sum_probs=156.8
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ....+++.++|+||++..
T Consensus 28 ~~vl~~vsl~i~~G-ei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l------ 99 (256)
T 1vpl_A 28 KEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGA------ 99 (256)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCC------
T ss_pred EEEEEeeEEEEcCC-cEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCC------
Confidence 45788888888888 9999999999999999999999999999999999999876 456678899999997421
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. . .++.+++.... ...... .....+..+.++.++..........++| |||||
T Consensus 100 -----~~------------~------ltv~enl~~~~~~~~~~~-~~~~~~~~~~l~~~gL~~~~~~~~~~LS--gGq~q 153 (256)
T 1vpl_A 100 -----YR------------N------MQGIEYLRFVAGFYASSS-SEIEEMVERATEIAGLGEKIKDRVSTYS--KGMVR 153 (256)
T ss_dssp -----CT------------T------SBHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHCCGGGGGSBGGGCC--HHHHH
T ss_pred -----CC------------C------CcHHHHHHHHHHHcCCCh-HHHHHHHHHHHHHCCCchHhcCChhhCC--HHHHH
Confidence 10 0 01111110000 000000 0001122233334444444555666788 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|+++..|+++++
T Consensus 154 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 233 (256)
T 1vpl_A 154 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233 (256)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHH
Confidence 9999999999999999999999999999999999998875 47999999999999988 999999999999999998887
Q ss_pred hh
Q psy3001 435 MK 436 (602)
Q Consensus 435 ~~ 436 (602)
..
T Consensus 234 ~~ 235 (256)
T 1vpl_A 234 KE 235 (256)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.1e-39 Score=313.71 Aligned_cols=204 Identities=19% Similarity=0.303 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH-hhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...+...+ ++.++|+||++.
T Consensus 19 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~------ 91 (240)
T 1ji0_A 19 IHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR------ 91 (240)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC------
T ss_pred eeEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCc------
Confidence 45799999999988 9999999999999999999999999999999999999988776655 456999999742
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc--cchhHHHHHHHHHHHHHHhhc-ccCCcccccCCcCCCChh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF--CSNLQRFYVATSRQLKRLESV-SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~lsgs~G 353 (602)
++. .. ++.+++.... ............+.++ .+ +..........++| ||
T Consensus 92 -----l~~------------~l------tv~enl~~~~~~~~~~~~~~~~~~~~l~---~~~~l~~~~~~~~~~LS--gG 143 (240)
T 1ji0_A 92 -----IFP------------EL------TVYENLMMGAYNRKDKEGIKRDLEWIFS---LFPRLKERLKQLGGTLS--GG 143 (240)
T ss_dssp -----CCT------------TS------BHHHHHHGGGTTCCCSSHHHHHHHHHHH---HCHHHHTTTTSBSSSSC--HH
T ss_pred -----cCC------------CC------cHHHHHHHhhhcCCCHHHHHHHHHHHHH---HcccHhhHhcCChhhCC--HH
Confidence 110 00 1111100000 0000011111222222 22 13333455667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~ 431 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 144 q~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~ 223 (240)
T 1ji0_A 144 EQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKA 223 (240)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEH
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998875 57999999999998877 999999999999999988
Q ss_pred hHHhh
Q psy3001 432 SVLMK 436 (602)
Q Consensus 432 ~~l~~ 436 (602)
+++..
T Consensus 224 ~~~~~ 228 (240)
T 1ji0_A 224 SELLD 228 (240)
T ss_dssp HHHHT
T ss_pred HHHhc
Confidence 88764
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.6e-39 Score=317.32 Aligned_cols=207 Identities=25% Similarity=0.375 Sum_probs=158.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC----------CCh---HHHhhccce
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----------LGL---HTLRSRLTI 264 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~----------~~~---~~~~~~i~~ 264 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. ++. ..+++.++|
T Consensus 19 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 97 (262)
T 1b0u_A 19 HEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTM 97 (262)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEE
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEE
Confidence 45799999999998 9999999999999999999999999999999999999862 333 346788999
Q ss_pred ecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHHHHHHHHHhhcccCCc-c
Q psy3001 265 IPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVATSRQLKRLESVSRSPI-Y 341 (602)
Q Consensus 265 v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~-~ 341 (602)
++|++. ++. ..++.+++... ....... .....+..+.++.++..+. .
T Consensus 98 v~Q~~~-----------l~~------------------~ltv~e~l~~~~~~~~~~~~-~~~~~~~~~~l~~~~L~~~~~ 147 (262)
T 1b0u_A 98 VFQHFN-----------LWS------------------HMTVLENVMEAPIQVLGLSK-HDARERALKYLAKVGIDERAQ 147 (262)
T ss_dssp ECSSCC-----------CCT------------------TSCHHHHHHHHHHHTTCCCH-HHHHHHHHHHHHHTTCCHHHH
T ss_pred EecCcc-----------cCC------------------CCcHHHHHHhhHHHhcCCCH-HHHHHHHHHHHHHcCCCchhh
Confidence 999732 110 00111111000 0000000 0111222333445555555 5
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEE
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLV 419 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~ 419 (602)
.....+|| ||||||++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||+|||+++.+.. ||+|++
T Consensus 148 ~~~~~~LS--gGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~ 225 (262)
T 1b0u_A 148 GKYPVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIF 225 (262)
T ss_dssp TSCGGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEE
T ss_pred cCCcccCC--HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE
Confidence 66677788 699999999999999999999999999999999999999998874 47999999999999987 999999
Q ss_pred EeCceEEeecChhHHhhc
Q psy3001 420 LDKGLVVEFDSPSVLMKN 437 (602)
Q Consensus 420 l~~G~i~~~g~~~~l~~~ 437 (602)
|++|++++.|++++++..
T Consensus 226 l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 226 LHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp EETTEEEEEECHHHHHHS
T ss_pred EECCEEEEeCCHHHHHhC
Confidence 999999999999988764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=328.25 Aligned_cols=207 Identities=19% Similarity=0.334 Sum_probs=162.6
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 85 (362)
T 2it1_A 16 FTALNNINLKIKDG-EFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWA------- 85 (362)
T ss_dssp SEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCC-------
T ss_pred EEEEEeeEEEECCC-CEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcc-------
Confidence 35799999999998 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+|| |||||
T Consensus 86 ----l~------------------~~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--GGq~Q 140 (362)
T 2it1_A 86 ----LY------------------PHMTVYKNIAFPLELRKAPR-EEIDKKVREVAKMLHIDKLLNRYPWQLS--GGQQQ 140 (362)
T ss_dssp ----CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCTTCTTCCGGGSC--HHHHH
T ss_pred ----cC------------------CCCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCCchHhhCChhhCC--HHHHH
Confidence 11 0011111111100 000000 0111223344455666666677777888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|++++
T Consensus 141 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 220 (362)
T 2it1_A 141 RVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDE 220 (362)
T ss_dssp HHHHHHHHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999988743 7999999999999887 99999999999999999999
Q ss_pred Hhhcch
Q psy3001 434 LMKNKA 439 (602)
Q Consensus 434 l~~~~~ 439 (602)
++..+.
T Consensus 221 ~~~~p~ 226 (362)
T 2it1_A 221 VYYKPK 226 (362)
T ss_dssp HHHSCS
T ss_pred HHhCcc
Confidence 887643
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-38 Score=313.91 Aligned_cols=205 Identities=30% Similarity=0.454 Sum_probs=155.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++| +|+|.++|.++...+...+++.++|+||++
T Consensus 34 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~--------- 102 (260)
T 2ghi_A 34 RTLKSINFFIPSG-TTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDT--------- 102 (260)
T ss_dssp CSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSC---------
T ss_pred ceeEeeEEEECCC-CEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCC---------
Confidence 4699999999998 99999999999999999999999987 899999999998888888899999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHH--HHHHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATS--RQLKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
.+| .. ++.+++.... ............ ...+.+..+ .........+.++| ||
T Consensus 103 --~l~-------------~~------tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LS--gG 159 (260)
T 2ghi_A 103 --ILF-------------NE------TIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLS--GG 159 (260)
T ss_dssp --CCC-------------SE------EHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCC--HH
T ss_pred --ccc-------------cc------CHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCC--HH
Confidence 222 11 1111111100 000000000000 000100010 01112234556777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
||||++|||||+++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+..||++++|++|++++.|++++
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~ 239 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999998877899999999999987799999999999999999998
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 240 l~~~ 243 (260)
T 2ghi_A 240 LLKL 243 (260)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 8764
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-39 Score=315.96 Aligned_cols=204 Identities=28% Similarity=0.430 Sum_probs=155.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+||++
T Consensus 16 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~--------- 85 (243)
T 1mv5_A 16 QILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDS--------- 85 (243)
T ss_dssp CSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSS---------
T ss_pred ceEEEeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCC---------
Confidence 4699999999998 999999999999999999999999999999999999998877777888999999973
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHh--hc------ccCCcccccCCcCCC
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLE--SV------SRSPIYSHFGETVTG 350 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~--~~------~~~~~~~~~~~~lsg 350 (602)
.+| .. ++.+++.......... ....+.++.+. .. +........+.++|
T Consensus 86 --~l~-------------~~------tv~enl~~~~~~~~~~--~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LS- 141 (243)
T 1mv5_A 86 --AIM-------------AG------TIRENLTYGLEGDYTD--EDLWQVLDLAFARSFVENMPDQLNTEVGERGVKIS- 141 (243)
T ss_dssp --CCC-------------CE------EHHHHTTSCTTSCSCH--HHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCC-
T ss_pred --ccc-------------cc------cHHHHHhhhccCCCCH--HHHHHHHHHhChHHHHHhCccchhchhccCcCcCC-
Confidence 222 10 1111111100000000 01111122111 00 01111233455677
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
||||||++|||||+++|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 142 -gGq~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~ 220 (243)
T 1mv5_A 142 -GGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGK 220 (243)
T ss_dssp -HHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSC
T ss_pred -HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCC
Confidence 6999999999999999999999999999999999999999988767899999999999886699999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 221 ~~~~~~~ 227 (243)
T 1mv5_A 221 HNELVAT 227 (243)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9888654
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-38 Score=327.11 Aligned_cols=206 Identities=24% Similarity=0.378 Sum_probs=160.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++ .++.++||+|++.
T Consensus 29 ~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~-------- 97 (355)
T 1z47_A 29 RSVRGVSFQIREG-EMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYA-------- 97 (355)
T ss_dssp TCEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGC--------
T ss_pred EEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcc--------
Confidence 3689999999988 9999999999999999999999999999999999999987654 3678999999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+|| ||||||
T Consensus 98 ---l~------------------~~ltv~eni~~~l~~~~~~~-~~~~~~v~~~l~~~gL~~~~~r~~~~LS--GGq~QR 153 (355)
T 1z47_A 98 ---LF------------------QHMTVYDNVSFGLREKRVPK-DEMDARVRELLRFMRLESYANRFPHELS--GGQQQR 153 (355)
T ss_dssp ---CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HHHHHH
T ss_pred ---cC------------------CCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCChhHhcCCcccCC--HHHHHH
Confidence 11 0011111111000 000000 0111223334445555555666777888 599999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|+|||||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++.|+++++
T Consensus 154 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 233 (355)
T 1z47_A 154 VALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEV 233 (355)
T ss_dssp HHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999988743 7999999999999987 999999999999999999998
Q ss_pred hhcch
Q psy3001 435 MKNKA 439 (602)
Q Consensus 435 ~~~~~ 439 (602)
+..+.
T Consensus 234 ~~~p~ 238 (355)
T 1z47_A 234 YEKPG 238 (355)
T ss_dssp HHSCS
T ss_pred HhCcc
Confidence 76543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-38 Score=326.72 Aligned_cols=208 Identities=19% Similarity=0.324 Sum_probs=159.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++. ++.++||+|++.
T Consensus 24 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------- 93 (372)
T 1v43_A 24 FTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYA------- 93 (372)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC----------
T ss_pred EEEEeeeEEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcc-------
Confidence 45789999999888 99999999999999999999999999999999999999877654 578999999732
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+|. ..++.+++..... ..... .....+..+.++.+++.........+|| |||||
T Consensus 94 ----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS--GGq~Q 148 (372)
T 1v43_A 94 ----VWP------------------HMTVYENIAFPLKIKKFPK-DEIDKRVRWAAELLQIEELLNRYPAQLS--GGQRQ 148 (372)
T ss_dssp -------------------------CCCHHHHHHTTCC--CCCH-HHHHHHHHHHHHHTTCGGGTTSCTTTCC--SSCHH
T ss_pred ----cCC------------------CCCHHHHHHHHHHhcCCCH-HHHHHHHHHHHHHcCChhHhcCChhhCC--HHHHH
Confidence 210 0011111111000 00000 0111223333445555566667778888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||+|||||+.+|++|+||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||||++|++|+++..|++++
T Consensus 149 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 228 (372)
T 1v43_A 149 RVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTE 228 (372)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988643 7999999999999977 99999999999999999999
Q ss_pred Hhhcchh
Q psy3001 434 LMKNKAS 440 (602)
Q Consensus 434 l~~~~~~ 440 (602)
++..+..
T Consensus 229 l~~~p~~ 235 (372)
T 1v43_A 229 VYLRPNS 235 (372)
T ss_dssp HHHCCSB
T ss_pred HHhCccc
Confidence 8876433
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-38 Score=317.49 Aligned_cols=209 Identities=21% Similarity=0.264 Sum_probs=157.7
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC--CCChHHHhhccceecccchhhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~ 275 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. ..+...+++.++|++|++...+.
T Consensus 34 ~~vL~~isl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~- 111 (279)
T 2ihy_A 34 KTILKKISWQIAKG-DKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQ- 111 (279)
T ss_dssp EEEEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSC-
T ss_pred EEEEEeeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccC-
Confidence 35688888888887 999999999999999999999999999999999999987 67777888999999997532110
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccc--hhHH--HHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS--NLQR--FYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
. ..++.+++...... .... ......+..+.++.++..........+||
T Consensus 112 ----------------------~----~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS-- 163 (279)
T 2ihy_A 112 ----------------------E----GERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLS-- 163 (279)
T ss_dssp ----------------------T----TSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSC--
T ss_pred ----------------------C----CCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCC--
Confidence 0 00111111000000 0000 00011122233344455444556666788
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEE--EEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTV--LTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tv--i~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|| |+|||+++.+.. ||+|++|++|++++
T Consensus 164 gGqkqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~ 243 (279)
T 2ihy_A 164 TGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQ 243 (279)
T ss_dssp HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEE
T ss_pred HHHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 6999999999999999999999999999999999999999988743 7899 999999999987 99999999999999
Q ss_pred ecChhHHhh
Q psy3001 428 FDSPSVLMK 436 (602)
Q Consensus 428 ~g~~~~l~~ 436 (602)
.|+++++..
T Consensus 244 ~g~~~~~~~ 252 (279)
T 2ihy_A 244 QGAVEDILT 252 (279)
T ss_dssp EEEHHHHCS
T ss_pred ECCHHHHhc
Confidence 998887754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-38 Score=308.31 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=156.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+ ++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ..++.++|+||++.
T Consensus 14 ~l~~isl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~--------- 80 (240)
T 2onk_A 14 FRLNVDFEMGR--DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYA--------- 80 (240)
T ss_dssp EEEEEEEEECS--SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCC---------
T ss_pred EEeeeEEEECC--EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCc---------
Confidence 38999999987 999999999999999999999999999999999999987543 34678999999742
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
++ . ..++.+++.... ...... ...+..+.++.++..........++| ||||||+
T Consensus 81 --l~-------------~-----~ltv~enl~~~~~~~~~~~---~~~~~~~~l~~~~l~~~~~~~~~~LS--gGqkqRv 135 (240)
T 2onk_A 81 --LF-------------P-----HLSVYRNIAYGLRNVERVE---RDRRVREMAEKLGIAHLLDRKPARLS--GGERQRV 135 (240)
T ss_dssp --CC-------------T-----TSCHHHHHHTTCTTSCHHH---HHHHHHHHHHTTTCTTTTTCCGGGSC--HHHHHHH
T ss_pred --cC-------------C-----CCcHHHHHHHHHHHcCCch---HHHHHHHHHHHcCCHHHhcCChhhCC--HHHHHHH
Confidence 11 0 001111111100 000111 11223334445555555566667788 6999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|||++||+++.+.. ||++++|++|++++.|++++++
T Consensus 136 ~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 215 (240)
T 2onk_A 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999999999999999999999999999999998874 3 7999999999999877 9999999999999999999887
Q ss_pred hcc
Q psy3001 436 KNK 438 (602)
Q Consensus 436 ~~~ 438 (602)
...
T Consensus 216 ~~~ 218 (240)
T 2onk_A 216 SAK 218 (240)
T ss_dssp HSC
T ss_pred hCc
Confidence 653
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-38 Score=315.12 Aligned_cols=205 Identities=24% Similarity=0.315 Sum_probs=155.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++... .+++.++|++|++...+
T Consensus 20 ~~vl~~vsl~i~~G-e~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~---- 91 (266)
T 2yz2_A 20 KKALENVSLVINEG-ECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQF---- 91 (266)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGC----
T ss_pred cceeeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhc----
Confidence 35799999999998 99999999999999999999999999999999999988642 67789999999842211
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC--CcccccCCcCCCChhhH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS--PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~lsgs~Gq~ 355 (602)
+ . .++.+++.......... .....+..+.++.++.. ........++| ||||
T Consensus 92 -----~-------------~------~tv~enl~~~~~~~~~~-~~~~~~~~~~l~~~gl~~~~~~~~~~~~LS--gGq~ 144 (266)
T 2yz2_A 92 -----F-------------A------ERVFDEVAFAVKNFYPD-RDPVPLVKKAMEFVGLDFDSFKDRVPFFLS--GGEK 144 (266)
T ss_dssp -----C-------------C------SSHHHHHHHTTTTTCTT-SCSHHHHHHHHHHTTCCHHHHTTCCGGGSC--HHHH
T ss_pred -----C-------------C------CcHHHHHHHHHHhcCCH-HHHHHHHHHHHHHcCcCCcccccCChhhCC--HHHH
Confidence 0 0 01111110000000000 00001122223344444 44455566777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++++.|++++
T Consensus 145 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 224 (266)
T 2yz2_A 145 RRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRME 224 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998874 47999999999999987 99999999999999998888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++..
T Consensus 225 ~~~~ 228 (266)
T 2yz2_A 225 FLEK 228 (266)
T ss_dssp HHHH
T ss_pred HhcC
Confidence 7653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=329.53 Aligned_cols=210 Identities=32% Similarity=0.578 Sum_probs=157.6
Q ss_pred CCCCCcEEEeeeEEEE---------------ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH
Q psy3001 193 WPEKGEVEFKDYKVRY---------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT 257 (602)
Q Consensus 193 ~~~~~~i~~~~vs~~~---------------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~ 257 (602)
|+..+.++++|++++| .+| |+++|+||||||||||+++|+|+++ ++|+|.++|+++..+++..
T Consensus 14 ~~~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~G-e~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~ 91 (390)
T 3gd7_A 14 WPSGGQMTVKDLTAKYTEGGNAILENISFSISPG-QRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQ 91 (390)
T ss_dssp SSSSCCEEEEEEEEESSSSSCCSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHH
T ss_pred CCCCCeEEEEEEEEEecCCCeEEeeceeEEEcCC-CEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHH
Confidence 3444455666666655 344 8999999999999999999999998 9999999999999999999
Q ss_pred HhhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhccc
Q psy3001 258 LRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSR 337 (602)
Q Consensus 258 ~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 337 (602)
+++.++||+|++ .+| ..+ +.+++....... .. ...+.++ .+++
T Consensus 92 ~rr~ig~v~Q~~-----------~lf-------------~~t------v~enl~~~~~~~-~~---~v~~~l~---~~~L 134 (390)
T 3gd7_A 92 WRKAFGVIPQKV-----------FIF-------------SGT------FRKNLDPNAAHS-DQ---EIWKVAD---EVGL 134 (390)
T ss_dssp HHHTEEEESCCC-----------CCC-------------SEE------HHHHHCTTCCSC-HH---HHHHHHH---HTTC
T ss_pred HhCCEEEEcCCc-----------ccC-------------ccC------HHHHhhhccccC-HH---HHHHHHH---HhCC
Confidence 999999999983 222 111 111110000000 00 0111111 1221
Q ss_pred CCc-----------ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeee
Q psy3001 338 SPI-----------YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH 406 (602)
Q Consensus 338 ~~~-----------~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH 406 (602)
... ..+.+.+|| |||||||+|||||+++|++||||||||+||+.++..+.+.|++...++|+|+|||
T Consensus 135 ~~~~~~~p~~l~~~i~~~g~~LS--GGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtH 212 (390)
T 3gd7_A 135 RSVIEQFPGKLDFVLVDGGCVLS--HGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212 (390)
T ss_dssp HHHHTTSTTGGGCEECTTTTTSC--HHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECS
T ss_pred HHHHhhcccccccccccccccCC--HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEc
Confidence 111 223344477 6999999999999999999999999999999999999999988777899999999
Q ss_pred cccccccCCeEEEEeCceEEeecChhHHhhcchhHHH
Q psy3001 407 RLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 407 ~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
+++.+..||||++|++|+|++.|++++++..+...|.
T Consensus 213 d~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 213 RIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp SSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 9988777999999999999999999999887655443
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-38 Score=327.20 Aligned_cols=207 Identities=23% Similarity=0.356 Sum_probs=159.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhhhc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.... ....++.++||+|++.
T Consensus 20 vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~------ 92 (353)
T 1oxx_K 20 ALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA------ 92 (353)
T ss_dssp EEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC------
T ss_pred eEeceEEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCc------
Confidence 799999999998 999999999999999999999999999999999999986521 2234678999999732
Q ss_pred cCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+|. ..++.+++..... ..... .....+..+.++.+++.........+|| ||||
T Consensus 93 -----l~~------------------~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~~~~~~LS--GGq~ 146 (353)
T 1oxx_K 93 -----LYP------------------NLTAFENIAFPLTNMKMSK-EEIRKRVEEVAKILDIHHVLNHFPRELS--GAQQ 146 (353)
T ss_dssp -----CCT------------------TSCHHHHHHGGGTTSSCCH-HHHHHHHHHHHHHTTCGGGTTSCGGGSC--HHHH
T ss_pred -----cCC------------------CCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHcCCchHhcCChhhCC--HHHH
Confidence 110 0011111111000 00000 0111223333445555555666777888 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++||||||||+||+..+..+.+.|+++.+ ++|+|+|||+++++.. ||||++|++|++++.|+++
T Consensus 147 QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~ 226 (353)
T 1oxx_K 147 QRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPE 226 (353)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999988743 7999999999999987 9999999999999999999
Q ss_pred HHhhcch
Q psy3001 433 VLMKNKA 439 (602)
Q Consensus 433 ~l~~~~~ 439 (602)
+++..+.
T Consensus 227 ~l~~~p~ 233 (353)
T 1oxx_K 227 DLYDNPV 233 (353)
T ss_dssp HHHHSCS
T ss_pred HHHhCcc
Confidence 9876543
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=327.30 Aligned_cols=208 Identities=19% Similarity=0.331 Sum_probs=160.0
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC------CChHHHhhccceecccchh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~------~~~~~~~~~i~~v~Q~~~~ 271 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++.. .++. ++.++||+|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~- 91 (372)
T 1g29_1 16 VTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYA- 91 (372)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCC-
T ss_pred EEEEeeeEEEEcCC-CEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCc-
Confidence 45799999999998 9999999999999999999999999999999999999865 4443 578999999732
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
+| ...++.+++.... ...... .....+..+.++.+++.........+||
T Consensus 92 ----------l~------------------~~ltv~eni~~~~~~~~~~~-~~~~~~v~~~l~~~~L~~~~~r~~~~LS- 141 (372)
T 1g29_1 92 ----------LY------------------PHMTVYDNIAFPLKLRKVPR-QEIDQRVREVAELLGLTELLNRKPRELS- 141 (372)
T ss_dssp ----------CC------------------TTSCHHHHHHHHHHHTTCCH-HHHHHHHHHHHHHHTCGGGTTCCGGGSC-
T ss_pred ----------cC------------------CCCCHHHHHHHHHHHcCCCH-HHHHHHHHHHHHHCCCchHhcCCcccCC-
Confidence 11 0011111111000 000000 0111222333444555555666777888
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
|||||||+|||||+.+|++||||||||+||+..+..+.+.|+++.+ +.|+|+|||+++++.. ||+|++|++|++++
T Consensus 142 -GGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~ 220 (372)
T 1g29_1 142 -GGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQ 220 (372)
T ss_dssp -HHHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEE
T ss_pred -HHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEE
Confidence 5999999999999999999999999999999999999999988643 7999999999999987 99999999999999
Q ss_pred ecChhHHhhcchh
Q psy3001 428 FDSPSVLMKNKAS 440 (602)
Q Consensus 428 ~g~~~~l~~~~~~ 440 (602)
.|++++++..+..
T Consensus 221 ~g~~~~l~~~p~~ 233 (372)
T 1g29_1 221 VGSPDEVYDKPAN 233 (372)
T ss_dssp EECHHHHHHSCSB
T ss_pred eCCHHHHHhCccc
Confidence 9999998876433
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-38 Score=309.86 Aligned_cols=199 Identities=18% Similarity=0.252 Sum_probs=157.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|+ |+|.++|.++...+...+++.++|++|++..
T Consensus 15 vl~~vsl~i~~G-e~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~-------- 84 (249)
T 2qi9_C 15 RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTP-------- 84 (249)
T ss_dssp TEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCC--------
T ss_pred EEeeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCcc--------
Confidence 589999999998 999999999999999999999999999 9999999999888888889999999997421
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLIC 359 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~ 359 (602)
+. ..++.+++......... ..+..+.++.++...........+| ||||||++
T Consensus 85 ---~~------------------~~tv~e~l~~~~~~~~~-----~~~~~~~l~~~~l~~~~~~~~~~LS--gGq~qrv~ 136 (249)
T 2qi9_C 85 ---PF------------------ATPVWHYLTLHQHDKTR-----TELLNDVAGALALDDKLGRSTNQLS--GGEWQRVR 136 (249)
T ss_dssp ---CT------------------TCBHHHHHHTTCSSTTC-----HHHHHHHHHHTTCGGGTTSBGGGCC--HHHHHHHH
T ss_pred ---CC------------------CCcHHHHHHHhhccCCc-----HHHHHHHHHHcCChhHhcCChhhCC--HHHHHHHH
Confidence 10 00111111110000000 1112223334444444555667788 69999999
Q ss_pred HHHHHhhCCC-------eEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 360 LARALLRKTK-------ILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 360 lAral~~~p~-------iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
|||||+.+|+ +|||||||++||+.++..+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 137 lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 216 (249)
T 2qi9_C 137 LAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216 (249)
T ss_dssp HHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999 999999999999999999999998874 47999999999999976 99999999999999998
Q ss_pred hhHHhh
Q psy3001 431 PSVLMK 436 (602)
Q Consensus 431 ~~~l~~ 436 (602)
++++..
T Consensus 217 ~~~~~~ 222 (249)
T 2qi9_C 217 REEVLT 222 (249)
T ss_dssp HHHHSC
T ss_pred HHHHhc
Confidence 888754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-38 Score=324.09 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=160.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++...++ .++.++||+|++.
T Consensus 15 ~l~~vsl~i~~G-e~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~--------- 82 (348)
T 3d31_A 15 SLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYS--------- 82 (348)
T ss_dssp EEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCC---------
T ss_pred EEeeeEEEEcCC-CEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcc---------
Confidence 799999999998 9999999999999999999999999999999999999987554 4678999999732
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccc-hhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCS-NLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| ...++.+++...... .... . .+..+.++.+++.........+|| ||||||+
T Consensus 83 --l~------------------~~ltv~enl~~~~~~~~~~~---~-~~v~~~l~~~~L~~~~~~~~~~LS--gGq~QRv 136 (348)
T 3d31_A 83 --LF------------------PHMNVKKNLEFGMRMKKIKD---P-KRVLDTARDLKIEHLLDRNPLTLS--GGEQQRV 136 (348)
T ss_dssp --CC------------------TTSCHHHHHHHHHHHHCCCC---H-HHHHHHHHHTTCTTTTTSCGGGSC--HHHHHHH
T ss_pred --cC------------------CCCCHHHHHHHHHHHcCCCH---H-HHHHHHHHHcCCchHhcCChhhCC--HHHHHHH
Confidence 11 000111111100000 0000 0 223334445666666677777888 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+.+|++|+||||||+||+.++..+.+.|+++.+ ++|+|+|||+++++.. ||+|++|++|+++..|++++++
T Consensus 137 alAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~ 216 (348)
T 3d31_A 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (348)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred HHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988743 7999999999999887 9999999999999999999988
Q ss_pred hcch
Q psy3001 436 KNKA 439 (602)
Q Consensus 436 ~~~~ 439 (602)
..+.
T Consensus 217 ~~p~ 220 (348)
T 3d31_A 217 EKPV 220 (348)
T ss_dssp SSCC
T ss_pred hCcc
Confidence 6543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-37 Score=301.80 Aligned_cols=200 Identities=21% Similarity=0.275 Sum_probs=148.3
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +..++|++|++.
T Consensus 16 ~~vl~~vsl~i~~G-e~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~---- 90 (250)
T 2d2e_A 16 ETILKGVNLVVPKG-EVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPV---- 90 (250)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC----
T ss_pred EEEEeceEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCc----
Confidence 45799999999998 99999999999999999999999 88999999999999988876655 456899999742
Q ss_pred hccCCceeEeeecccceeeeccccceeeccccccccccc------ccchhHHHHHHHHHHHHHHhhcccC-CcccccCCc
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP------FCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGET 347 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~ 347 (602)
++.. .++.+++... ............. +.++.++.. .........
T Consensus 91 -------~~~~------------------~tv~e~l~~~~~~~~~~~~~~~~~~~~~~---~~l~~~gl~~~~~~~~~~~ 142 (250)
T 2d2e_A 91 -------EVPG------------------VTIANFLRLALQAKLGREVGVAEFWTKVK---KALELLDWDESYLSRYLNE 142 (250)
T ss_dssp --------CCS------------------CBHHHHHHHHHHHHHTSCCCHHHHHHHHH---HHHHHHTCCGGGGGSBTTC
T ss_pred -------cccC------------------CCHHHHHHHHHHhhccccCCHHHHHHHHH---HHHHHcCCChhHhcCCccc
Confidence 1100 0011110000 0000011111122 223334442 334444455
Q ss_pred -CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCc
Q psy3001 348 -VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKG 423 (602)
Q Consensus 348 -lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G 423 (602)
+| ||||||++|||||+++|++|||||||++||+.++..+.+.|+++. +++|||+|||+++.+.. ||++++|++|
T Consensus 143 ~LS--gGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G 220 (250)
T 2d2e_A 143 GFS--GGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDG 220 (250)
T ss_dssp C------HHHHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETT
T ss_pred CCC--HHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECC
Confidence 77 599999999999999999999999999999999999999998875 47999999999999886 4999999999
Q ss_pred eEEeecChh
Q psy3001 424 LVVEFDSPS 432 (602)
Q Consensus 424 ~i~~~g~~~ 432 (602)
++++.|+++
T Consensus 221 ~i~~~g~~~ 229 (250)
T 2d2e_A 221 RVVATGGPE 229 (250)
T ss_dssp EEEEEESHH
T ss_pred EEEEEeCHH
Confidence 999998876
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=298.88 Aligned_cols=209 Identities=17% Similarity=0.207 Sum_probs=151.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc--cCCCCceEEECCeecCCCChHHH-hhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~--~~~~~G~I~i~g~~~~~~~~~~~-~~~i~~v~Q~~~~~~~ 274 (602)
...++|+||++.+| ++++|+||||||||||+|+|+|+ ++|++|+|.++|.++...+.... +..++|++|++..
T Consensus 33 ~~vl~~vsl~i~~G-e~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l--- 108 (267)
T 2zu0_C 33 KAILRGLSLDVHPG-EVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVE--- 108 (267)
T ss_dssp EEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCC---
T ss_pred EEEEEeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccc---
Confidence 45788888888888 99999999999999999999999 57899999999999987776655 4569999997421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccc-ccccc--ccc-cchhHHHHHHHHHHHHHHhhcccC-CcccccCC-cC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDV-KPLII--TPF-CSNLQRFYVATSRQLKRLESVSRS-PIYSHFGE-TV 348 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~-~l 348 (602)
+. ..+...+-.. ..... ... ........ .+..+.++.++.. ........ +|
T Consensus 109 --------~~------------~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~gl~~~~~~~~~~~~L 165 (267)
T 2zu0_C 109 --------IP------------GVSNQFFLQTALNAVRSYRGQETLDRFDFQ---DLMEEKIALLKMPEDLLTRSVNVGF 165 (267)
T ss_dssp --------CT------------TCBHHHHHHHHHHHHHHGGGCCCCCHHHHH---HHHHHHHHHTTCCTTTTTSBTTTTC
T ss_pred --------cc------------cccHHHHHHHHHHhhhhhhccccCCHHHHH---HHHHHHHHHcCCChhHhcCCcccCC
Confidence 10 0000000000 00000 000 00000111 1222333344443 23333333 47
Q ss_pred CCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc--CCeEEEEeCceE
Q psy3001 349 TGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID--SDRVLVLDKGLV 425 (602)
Q Consensus 349 sgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~--~d~i~~l~~G~i 425 (602)
| ||||||++|||||+.+|++|||||||++||+.++..+.+.|+++. +++|||++||+++.+.. ||++++|++|++
T Consensus 166 S--gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 166 S--GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp C--HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred C--HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 7 699999999999999999999999999999999999999999874 47999999999999875 899999999999
Q ss_pred EeecChhHHh
Q psy3001 426 VEFDSPSVLM 435 (602)
Q Consensus 426 ~~~g~~~~l~ 435 (602)
++.|+++++.
T Consensus 244 ~~~g~~~~~~ 253 (267)
T 2zu0_C 244 VKSGDFTLVK 253 (267)
T ss_dssp EEEECTTHHH
T ss_pred EEEcCHHHHh
Confidence 9999887653
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-37 Score=298.66 Aligned_cols=192 Identities=22% Similarity=0.352 Sum_probs=142.5
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 19 ~vl~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~-------- 76 (237)
T 2cbz_A 19 PTLNGITFSIPEG-ALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAW-------- 76 (237)
T ss_dssp CSEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCC--------
T ss_pred ceeeeeEEEECCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCc--------
Confidence 4699999999998 99999999999999999999999999999999998 3899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-----CcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-----PIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++....... ........+..+..+.+... ......+.++| ||
T Consensus 77 ---~~-------------~~------tv~enl~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--gG 131 (237)
T 2cbz_A 77 ---IQ-------------ND------SLRENILFGCQLE-EPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLS--GG 131 (237)
T ss_dssp ---CC-------------SE------EHHHHHHTTSCCC-TTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCC--HH
T ss_pred ---CC-------------Cc------CHHHHhhCccccC-HHHHHHHHHHHhhHHHHHhccccccccccCCCCCCC--HH
Confidence 11 00 1111111000000 00001111111111111111 12345566777 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHH---HhccccEEEEeeecccccccCCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR---SEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~---~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|||||||++||+.++..+.+.+. ...+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 132 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~ 211 (237)
T 2cbz_A 132 QKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGS 211 (237)
T ss_dssp HHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCC
Confidence 9999999999999999999999999999999999999884 3445799999999999986799999999999999999
Q ss_pred hhHHhhc
Q psy3001 431 PSVLMKN 437 (602)
Q Consensus 431 ~~~l~~~ 437 (602)
+++++..
T Consensus 212 ~~~~~~~ 218 (237)
T 2cbz_A 212 YQELLAR 218 (237)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 9988754
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-36 Score=299.63 Aligned_cols=195 Identities=21% Similarity=0.292 Sum_probs=152.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccc-eecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~ 276 (602)
...++|+||++. | ++++|+||||||||||+|+|+|++ |++|+|.++|.++... .. ++.++ |+||++..
T Consensus 18 ~~il~~vsl~i~-G-e~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l----- 86 (263)
T 2pjz_A 18 RFSLENINLEVN-G-EKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI----- 86 (263)
T ss_dssp EEEEEEEEEEEC-S-SEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-----
T ss_pred ceeEEeeeEEEC-C-EEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-----
Confidence 457999999999 7 999999999999999999999999 9999999999988654 23 67899 99997421
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC-CcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS-PIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~lsgs~Gq~ 355 (602)
..++.+++.... ... .....+..+.++.++.. ........+|| ||||
T Consensus 87 --------------------------~~tv~enl~~~~--~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~LS--gGqk 134 (263)
T 2pjz_A 87 --------------------------GVTVNDIVYLYE--ELK--GLDRDLFLEMLKALKLGEEILRRKLYKLS--AGQS 134 (263)
T ss_dssp --------------------------TSBHHHHHHHHH--HHT--CCCHHHHHHHHHHTTCCGGGGGSBGGGSC--HHHH
T ss_pred --------------------------CCcHHHHHHHhh--hhc--chHHHHHHHHHHHcCCChhHhcCChhhCC--HHHH
Confidence 011111110000 000 00011122333344555 55566677788 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CC-eEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SD-RVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d-~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|+|||||++||+.++..+.+.|+++.+ |+|++||+++.+.. || ++++|++|++++.|++++
T Consensus 135 qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~ 212 (263)
T 2pjz_A 135 VLVRTSLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSE 212 (263)
T ss_dssp HHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHH
Confidence 999999999999999999999999999999999999988755 99999999999877 99 999999999999999888
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
+...
T Consensus 213 l~~~ 216 (263)
T 2pjz_A 213 LLES 216 (263)
T ss_dssp HHTE
T ss_pred HHhh
Confidence 7643
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=292.68 Aligned_cols=194 Identities=24% Similarity=0.366 Sum_probs=141.4
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++++| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++
T Consensus 21 ~~il~~vsl~i~~G-e~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~-------- 78 (229)
T 2pze_A 21 TPVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFS-------- 78 (229)
T ss_dssp CCSEEEEEEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSC--------
T ss_pred ceeeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCC--------
Confidence 34699999999998 99999999999999999999999999999999998 489999973
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHH--HHHHHHhhcc--cCCcccccCCcCCCChh
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATS--RQLKRLESVS--RSPIYSHFGETVTGNVG 353 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~l~~~~--~~~~~~~~~~~lsgs~G 353 (602)
.++ .. ++.+++................ ...+.+.... ........+.++| ||
T Consensus 79 ---~~~-------------~~------tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS--gG 134 (229)
T 2pze_A 79 ---WIM-------------PG------TIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLS--GG 134 (229)
T ss_dssp ---CCC-------------SB------CHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSC--HH
T ss_pred ---ccc-------------CC------CHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCC--HH
Confidence 222 11 1111111100000000000000 0001111110 0112233456677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
||||++|||||+++|++|||||||++||+.++..+.+.+ +...+++|+|++||+++.+..||++++|++|++++.|+++
T Consensus 135 qkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~ 214 (229)
T 2pze_A 135 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 214 (229)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999864 4554578999999999988669999999999999999998
Q ss_pred HHhhc
Q psy3001 433 VLMKN 437 (602)
Q Consensus 433 ~l~~~ 437 (602)
++...
T Consensus 215 ~~~~~ 219 (229)
T 2pze_A 215 ELQNL 219 (229)
T ss_dssp HHHTC
T ss_pred HHHhc
Confidence 88654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-36 Score=296.18 Aligned_cols=190 Identities=24% Similarity=0.431 Sum_probs=145.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhcc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
...++|+||++.+| ++++|+||||||||||+++|+|+++|++|+|. +++.++|+||++....
T Consensus 18 ~~vl~~isl~i~~G-e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~---- 79 (253)
T 2nq2_C 18 NFLFQQLNFDLNKG-DILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPF---- 79 (253)
T ss_dssp TEEEEEEEEEEETT-CEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSS----
T ss_pred CeEEEEEEEEECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCC----
Confidence 45799999999998 99999999999999999999999999999998 2567999999743210
Q ss_pred CCceeEeeecccceeeeccccceeeccccccccccccc-------chhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-------SNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG 350 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg 350 (602)
.. ++.+++..... ....... .+..+.++.++..+.......++|
T Consensus 80 -------------------~~------tv~enl~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~~~LS- 130 (253)
T 2nq2_C 80 -------------------AY------SVLDIVLMGRSTHINTFAKPKSHDY---QVAMQALDYLNLTHLAKREFTSLS- 130 (253)
T ss_dssp -------------------CC------BHHHHHHGGGGGGSCTTCCCCHHHH---HHHHHHHHHTTCGGGTTSBGGGSC-
T ss_pred -------------------CC------CHHHHHHHhhhhhcccccCCCHHHH---HHHHHHHHHcCChHHhcCChhhCC-
Confidence 00 11111100000 0000111 122223334444444555666788
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEe
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
||||||++|||||+.+|++|||||||++||+.++..+.+.++++.+ ++|||++||+++.+.. ||++++|++|+ ++
T Consensus 131 -gGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~ 208 (253)
T 2nq2_C 131 -GGQRQLILIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FK 208 (253)
T ss_dssp -HHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EE
T ss_pred -HHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-Ee
Confidence 6999999999999999999999999999999999999999988743 7999999999999977 99999999999 88
Q ss_pred ecChhHHhh
Q psy3001 428 FDSPSVLMK 436 (602)
Q Consensus 428 ~g~~~~l~~ 436 (602)
.|+++++..
T Consensus 209 ~g~~~~~~~ 217 (253)
T 2nq2_C 209 FGETRNILT 217 (253)
T ss_dssp EEEHHHHCC
T ss_pred cCCHHHHhC
Confidence 888887753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=277.91 Aligned_cols=185 Identities=18% Similarity=0.282 Sum_probs=137.4
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++|.++. .+++.++|+||++..
T Consensus 23 ~il~~vsl~i~~G-e~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~------- 89 (214)
T 1sgw_A 23 PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIV------- 89 (214)
T ss_dssp EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCC-------
T ss_pred eEEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcC-------
Confidence 5799999999988 999999999999999999999999999999999999875 357889999997421
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
+. . .++.+++.... ...... ...+..+.++.++.... .....++| ||||||
T Consensus 90 ----~~------------~------~tv~enl~~~~~~~~~~~---~~~~~~~~l~~~gl~~~-~~~~~~LS--gGqkqr 141 (214)
T 1sgw_A 90 ----PR------------K------ISVEDYLKAVASLYGVKV---NKNEIMDALESVEVLDL-KKKLGELS--QGTIRR 141 (214)
T ss_dssp ----CT------------T------SBHHHHHHHHHHHTTCCC---CHHHHHHHHHHTTCCCT-TSBGGGSC--HHHHHH
T ss_pred ----CC------------C------CCHHHHHHHHHHhcCCch---HHHHHHHHHHHcCCCcC-CCChhhCC--HHHHHH
Confidence 10 0 01111100000 000000 01112223334555544 55666777 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceE
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLV 425 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i 425 (602)
++|||||+.+|++|||||||++||+.++..+.+.++++. +++|||++||+++.+.. ||+++. ..|+|
T Consensus 142 v~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~-~~~~~ 210 (214)
T 1sgw_A 142 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHK-YSTKI 210 (214)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGG-GBC--
T ss_pred HHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEE-eCCcc
Confidence 999999999999999999999999999999999998875 47899999999999988 777653 34444
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=288.55 Aligned_cols=190 Identities=25% Similarity=0.387 Sum_probs=138.2
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++.+| ++++|+||||||||||+|+|+|+++|++|+|.++| .++|+||++.
T Consensus 52 ~vl~~isl~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~-------- 109 (290)
T 2bbs_A 52 PVLKDINFKIERG-QLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSW-------- 109 (290)
T ss_dssp CSEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCC--------
T ss_pred eEEEeeEEEEcCC-CEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCc--------
Confidence 4699999999998 99999999999999999999999999999999998 4899999732
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHH---HHHHhhcc--cCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ---LKRLESVS--RSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~--~~~~~~~~~~~lsgs~G 353 (602)
++ .. ++.+++. ........ .....+. .+.+.... ........+..+| ||
T Consensus 110 ---l~-------------~~------tv~enl~-~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LS--gG 163 (290)
T 2bbs_A 110 ---IM-------------PG------TIKENII-GVSYDEYR-YRSVIKACQLEEDISKFAEKDNIVLGEGGITLS--GG 163 (290)
T ss_dssp ---CC-------------SS------BHHHHHH-TTCCCHHH-HHHHHHHTTCHHHHHTSTTGGGCBC----CCCC--HH
T ss_pred ---cC-------------cc------cHHHHhh-CcccchHH-HHHHHHHhChHHHHHhccccccchhcCccCcCC--HH
Confidence 21 10 1111111 00000000 0000000 01111110 0111233345677 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHH-HHhccccEEEEeeecccccccCCeEEEEeCceEEeecChh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI-RSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l-~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~ 432 (602)
||||++|||||+++|++|||||||++||+.++..+.+.+ +...+++|||++||+++.+..||++++|++|++++.|+++
T Consensus 164 q~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~ 243 (290)
T 2bbs_A 164 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFS 243 (290)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHH
Confidence 999999999999999999999999999999999998864 4444578999999999988669999999999999999998
Q ss_pred HHhh
Q psy3001 433 VLMK 436 (602)
Q Consensus 433 ~l~~ 436 (602)
++..
T Consensus 244 ~l~~ 247 (290)
T 2bbs_A 244 ELQN 247 (290)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 8864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-30 Score=285.12 Aligned_cols=187 Identities=25% Similarity=0.335 Sum_probs=136.7
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|++++|++.+| |++||+||||||||||+|+|+|+++|++|+|.+ +..++|+||++...+
T Consensus 372 l~~~~~~v~~G-ei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~v~Q~~~~~~------- 430 (607)
T 3bk7_A 372 LEVEPGEIRKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAYKPQYIKAEY------- 430 (607)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEEECSSCCCCC-------
T ss_pred EEecccccCCC-CEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEEEecCccCCC-------
Confidence 33333344455 999999999999999999999999999999976 236899999742110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
. .++.+.+.. ..........+..+.++.++..+.......+|| |||||||+|
T Consensus 431 ----------------~------~tv~e~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--GGe~QRv~i 482 (607)
T 3bk7_A 431 ----------------E------GTVYELLSK----IDSSKLNSNFYKTELLKPLGIIDLYDRNVEDLS--GGELQRVAI 482 (607)
T ss_dssp ----------------S------SBHHHHHHH----HHHHHHHCHHHHHHTHHHHTCTTTTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------C------CcHHHHHHh----hhccCCCHHHHHHHHHHHcCCchHhcCChhhCC--HHHHHHHHH
Confidence 0 011111000 000000001112222334444455556666788 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHHh
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVLM 435 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l~ 435 (602)
||||+++|++|||||||++||+.+...+.+.|+++. .+.|+|+|||+++++.. |||+++|++ |++...|++++++
T Consensus 483 AraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~ 562 (607)
T 3bk7_A 483 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMR 562 (607)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHH
Confidence 999999999999999999999999999999999874 47999999999999987 999999986 7777888887765
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 563 ~ 563 (607)
T 3bk7_A 563 E 563 (607)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-30 Score=282.98 Aligned_cols=187 Identities=24% Similarity=0.322 Sum_probs=135.2
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
|++++|++.+| |++||+|+||||||||+|+|+|+++|++|+|.+ ...++|+||++...+
T Consensus 302 l~~~~~~i~~G-e~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~v~Q~~~~~~------- 360 (538)
T 1yqt_A 302 LEVEPGEIKKG-EVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAYKPQYIKADY------- 360 (538)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEEECSSCCCCC-------
T ss_pred EEeCccccCCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEEEecCCcCCC-------
Confidence 33333444556 999999999999999999999999999999975 236899999742110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
..++.+.+.. ..........+..+.++.++..+........|| ||||||++|
T Consensus 361 ----------------------~~tv~~~~~~----~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS--GGe~qrv~l 412 (538)
T 1yqt_A 361 ----------------------EGTVYELLSK----IDASKLNSNFYKTELLKPLGIIDLYDREVNELS--GGELQRVAI 412 (538)
T ss_dssp ----------------------SSBHHHHHHH----HHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------------CCcHHHHHHh----hhccCCCHHHHHHHHHHHcCChhhhcCChhhCC--HHHHHHHHH
Confidence 0011111000 000000001111222333333344455566777 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHHh
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVLM 435 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l~ 435 (602)
||||+.+|++|||||||++||+.+...+.+.|+++. .+.|||+|||+++++.. ||||++|++ |++...|++++++
T Consensus 413 AraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~ 492 (538)
T 1yqt_A 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMR 492 (538)
T ss_dssp HHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHH
Confidence 999999999999999999999999999999999864 47999999999999987 999999986 7788888887765
Q ss_pred h
Q psy3001 436 K 436 (602)
Q Consensus 436 ~ 436 (602)
.
T Consensus 493 ~ 493 (538)
T 1yqt_A 493 E 493 (538)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.96 E-value=4.7e-30 Score=279.04 Aligned_cols=187 Identities=18% Similarity=0.244 Sum_probs=131.2
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++++++++.+| |++||+|+||||||||+++|+|+++|++|+|.+++. .++++||++...+
T Consensus 284 l~~~~~~i~~G-ei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~~------------~i~~~~q~~~~~~------- 343 (538)
T 3ozx_A 284 LVVDNGEAKEG-EIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQ------------ILSYKPQRIFPNY------- 343 (538)
T ss_dssp EEECCEEEETT-CEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSCC------------CEEEECSSCCCCC-------
T ss_pred EEeccceECCC-CEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCe------------eeEeechhccccc-------
Confidence 33334444566 999999999999999999999999999999997753 5788888632110
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
..+... .+... ......... ....+.++.++..........+|| |||||||+|
T Consensus 344 ----------------~~tv~~--~l~~~-~~~~~~~~~------~~~~~~l~~~~l~~~~~~~~~~LS--GGq~QRv~i 396 (538)
T 3ozx_A 344 ----------------DGTVQQ--YLENA-SKDALSTSS------WFFEEVTKRLNLHRLLESNVNDLS--GGELQKLYI 396 (538)
T ss_dssp ----------------SSBHHH--HHHHH-CSSTTCTTS------HHHHHTTTTTTGGGCTTSBGGGCC--HHHHHHHHH
T ss_pred ----------------CCCHHH--HHHHh-hhhccchhH------HHHHHHHHHcCCHHHhcCChhhCC--HHHHHHHHH
Confidence 000000 00000 000000000 011122223344444555667788 699999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeecChhHH
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFDSPSVL 434 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g~~~~l 434 (602)
||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |.....+++.++
T Consensus 397 AraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~ 475 (538)
T 3ozx_A 397 AATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTL 475 (538)
T ss_dssp HHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHH
Confidence 999999999999999999999999999999998874 37899999999999988 999999986 444445555443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-30 Score=293.30 Aligned_cols=256 Identities=15% Similarity=0.144 Sum_probs=163.6
Q ss_pred ccCCChhHHHHHHhcc---------cCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccc
Q psy3001 220 RTGAGKSSLTLALFRI---------IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVS 290 (602)
Q Consensus 220 ~sGsGKSTL~~ll~g~---------~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~ 290 (602)
.+..||+++.+.+... +.|..|+|.++|.++.++....+.+..+++.|.+..+++....
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~~~------------ 337 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGHAE------------ 337 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCSTT------------
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcccc------------
Confidence 3556899999888773 3467899999999887733323333333443332211110000
Q ss_pred eeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC-
Q psy3001 291 VLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT- 368 (602)
Q Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p- 368 (602)
..... .....-.........+.++.+..+++..+ ......+|| |||||||+||++|..+|
T Consensus 338 ------------~~~~~----~~~~~i~~~i~~ei~~rl~~L~~vGL~~l~l~r~~~tLS--GGe~QRV~LA~aL~~~p~ 399 (842)
T 2vf7_A 338 ------------RVKNR----PEQAIALQRMAADLVKRLDVLLHLGLGYLGLDRSTPTLS--PGELQRLRLATQLYSNLF 399 (842)
T ss_dssp ------------SSSSC----SSHHHHHHHHHHHHHHHHHHHHHTTCTTSBTTCBGGGSC--HHHHHHHHHHHHTTTCCC
T ss_pred ------------hhhcc----hhhHHHHHHHHHHHHHHHHHHHhCCCCcCCccCCcCcCC--HHHHHHHHHHHHHhhCCC
Confidence 00000 00000001111222233344556666543 455666777 69999999999999999
Q ss_pred -CeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEE------eCceEEeecChhHHhhcchh
Q psy3001 369 -KILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKAS 440 (602)
Q Consensus 369 -~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~ 440 (602)
++|||||||++||+...+++.+.++.+.. |.|||+|+||++.+..||+|++| ++|+++..|+++++.+.+..
T Consensus 400 ~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~~~~ 479 (842)
T 2vf7_A 400 GVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHVPES 479 (842)
T ss_dssp SCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGCTTC
T ss_pred CeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhchHH
Confidence 59999999999999999999999988754 79999999999988779999999 79999999999998765322
Q ss_pred HHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhccc---ccccceeeEEecceeEEEECCCCCChHHHHHH-HHhcc
Q psy3001 441 IFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKET---LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLA-LFRII 516 (602)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~-L~g~~ 516 (602)
............ ......... ..+.... -.+++++|+|++||++||+|+||||||||+++ |+|++
T Consensus 480 ~~~~~l~~~~~~--~~~~~~~~~---------~~L~v~~l~~~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l 548 (842)
T 2vf7_A 480 QTGQYLFADRHT--EPHTPREPA---------GWLELNGVTRNNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDAL 548 (842)
T ss_dssp HHHHHHHTCCCC--CCCCCCCCS---------CEEEEEEEEETTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHH
T ss_pred HHHHHhhhcccc--cccccCCCC---------ceEEEEeeeecccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHH
Confidence 211111100000 000000000 0011111 13567999999999999999999999999997 77664
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.1e-29 Score=276.88 Aligned_cols=191 Identities=20% Similarity=0.305 Sum_probs=141.0
Q ss_pred EEEeeeEEEEecC----CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREG----LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~----~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
..+++++|+..+| +|+++|+|+||||||||+++|+|+++|++|+. +. +..++++||++...+
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~~~~q~~~~~~- 426 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVSMKPQKIAPKF- 426 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEEEECSSCCCCC-
T ss_pred cccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEEEecccccccC-
Confidence 4577889988765 37899999999999999999999999999972 11 235899999632111
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
.. ++.+++.......... ..... +.++.++...........|| |||
T Consensus 427 ----------------------~~------tv~e~~~~~~~~~~~~-~~~~~---~~l~~l~l~~~~~~~~~~LS--GGq 472 (608)
T 3j16_B 427 ----------------------PG------TVRQLFFKKIRGQFLN-PQFQT---DVVKPLRIDDIIDQEVQHLS--GGE 472 (608)
T ss_dssp ----------------------CS------BHHHHHHHHCSSTTTS-HHHHH---HTHHHHTSTTTSSSBSSSCC--HHH
T ss_pred ----------------------Cc------cHHHHHHHHhhccccc-HHHHH---HHHHHcCChhhhcCChhhCC--HHH
Confidence 00 0000000000000000 00111 22234444455666677788 699
Q ss_pred HHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeC--ceEEeec
Q psy3001 355 RQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDK--GLVVEFD 429 (602)
Q Consensus 355 ~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~--G~i~~~g 429 (602)
||||+|||||+.+|++|||||||++||+.+...+.+.|+++. .++|||+|||+++++.. ||||++|++ |+++..|
T Consensus 473 kQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 473 LQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp HHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 999999999999999999999999999999999999998863 47999999999999988 999999996 8999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++..
T Consensus 553 ~p~~~~~~ 560 (608)
T 3j16_B 553 APESLLTG 560 (608)
T ss_dssp CCEEHHHH
T ss_pred ChHHHhhh
Confidence 99988764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.4e-30 Score=289.06 Aligned_cols=171 Identities=23% Similarity=0.249 Sum_probs=122.3
Q ss_pred HHHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhc-cccEEEEe
Q psy3001 329 LKRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTI 404 (602)
Q Consensus 329 ~~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~i 404 (602)
.+.+..+++... ......+|| |||||||+|||||.++|+ +|||||||++||+....++.+.|+++. .|.|||+|
T Consensus 445 ~~~L~~vgL~~l~l~r~~~~LS--GGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~TvivV 522 (916)
T 3pih_A 445 LEFLVDVGLEYLTLSRSATTLS--GGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIVV 522 (916)
T ss_dssp HHHHHTTTCTTCBTTSBGGGCC--HHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEEE
T ss_pred HHHHHHcCCccccccCCcccCC--HHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEEE
Confidence 344445555433 345566777 699999999999999887 999999999999999999999999875 47999999
Q ss_pred eecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHH-HHHHhh-hhhHHHHHHHhhhhhHHHHHHHHHHHh
Q psy3001 405 AHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFY-SMAKDA-GLAWLAVRLETVGNLITFSAALLAVLS 476 (602)
Q Consensus 405 tH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (602)
+||++.+..||+|++| ++|+++..|+++++++....... ...... .......+ ...... ..+..
T Consensus 523 tHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~-------l~v~~ 594 (916)
T 3pih_A 523 EHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNPDSSLTGEYLSGKRKITVNKTR-RLPYAS-------LKIKG 594 (916)
T ss_dssp CCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSCTTCHHHHHHHSSSCCCCCSSC-CCCSSE-------EEEEE
T ss_pred eCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCchhcchhhhhhccccccccccc-ccccce-------EEEee
Confidence 9999998889999999 89999999999998875432111 111100 00000000 000000 00000
Q ss_pred cccccccceeeEEecceeEEEECCCCCChHHHH
Q psy3001 477 KETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLT 509 (602)
Q Consensus 477 ~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl 509 (602)
...-.++++||+|+.|+++||+|+||||||||+
T Consensus 595 ~~~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl 627 (916)
T 3pih_A 595 VRHNNLKNIDVEIPLGVFVCVTGVSGSGKSSLV 627 (916)
T ss_dssp ECSTTCCSEEEEEESSSEEEEECSTTSSHHHHH
T ss_pred eccccccccceEEcCCcEEEEEccCCCChhhhH
Confidence 111235679999999999999999999999997
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.9e-28 Score=273.83 Aligned_cols=84 Identities=17% Similarity=0.264 Sum_probs=74.0
Q ss_pred ccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc-CCeEEEEe
Q psy3001 343 HFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
.....|| ||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|||+|||+++++.. ||++++|+
T Consensus 897 ~~~~~LS--GGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~ 972 (986)
T 2iw3_A 897 SRIRGLS--GGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVK 972 (986)
T ss_dssp SCGGGCC--HHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCB
T ss_pred CCccccC--HHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEE
Confidence 3445677 69999999999999999999999999999999999999998765 5699999999999987 99999999
Q ss_pred CceEEeecC
Q psy3001 422 KGLVVEFDS 430 (602)
Q Consensus 422 ~G~i~~~g~ 430 (602)
+|+++..|+
T Consensus 973 ~G~Iv~~G~ 981 (986)
T 2iw3_A 973 DGRMTPSGH 981 (986)
T ss_dssp TTBCCC---
T ss_pred CCEEEEeCC
Confidence 999987664
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=2.5e-28 Score=275.07 Aligned_cols=172 Identities=20% Similarity=0.275 Sum_probs=124.5
Q ss_pred HHHhhcccCCc-ccccCCcCCCChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEee
Q psy3001 330 KRLESVSRSPI-YSHFGETVTGNVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIA 405 (602)
Q Consensus 330 ~~l~~~~~~~~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~it 405 (602)
+.+..+++..+ ......+|| |||||||+||++|..+| ++|||||||++||+...+++.+.|+++. .|.|||+|+
T Consensus 486 ~~L~~vGL~~l~ldR~~~tLS--GGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVe 563 (972)
T 2r6f_A 486 GFLQNVGLDYLTLSRSAGTLS--GGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 563 (972)
T ss_dssp HHHHHHTCTTSBSSSBGGGCC--HHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEEC
T ss_pred HHhhhCCCCccccCCccccCC--HHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 33445565543 455666777 69999999999999985 9999999999999999999999999875 479999999
Q ss_pred ecccccccCCeEEEE------eCceEEeecChhHHhhcchhHHHH-HHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhc-
Q psy3001 406 HRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNKASIFYS-MAKDAGLAWLAVRLETVGNLITFSAALLAVLSK- 477 (602)
Q Consensus 406 H~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 477 (602)
||++++..||+|++| ++|+++..|+++++.+.+...... +........ +........ ..+..
T Consensus 564 Hdl~~i~~ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~~~slt~~~l~g~~~~~~-~~~~~~~~~---------~~L~v~ 633 (972)
T 2r6f_A 564 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTGQYLSGKKFIPI-PAERRRPDG---------RWLEVV 633 (972)
T ss_dssp CCHHHHHSCSEEEEECSSSGGGCCSEEEEECTTTTTTCTTCTTHHHHHTSSCCCC-CSSCCCCCS---------CEEEEE
T ss_pred cCHHHHHhCCEEEEeCCCccCCCCEEEEecCHHHHHhhhHHHHHHHhcCCccccC-ccccccccc---------eEEEEe
Confidence 999998789999999 799999999999987643222111 111000000 000000000 00100
Q ss_pred --ccccccceeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 478 --ETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 478 --~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
..-.++++||+|+.||++||+|+||||||||+++|+
T Consensus 634 ~l~~~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll 671 (972)
T 2r6f_A 634 GAREHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVL 671 (972)
T ss_dssp EECSSSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTH
T ss_pred cCcccccccceEEEcCCCEEEEEcCCCCCHHHHHHHHH
Confidence 011356799999999999999999999999999854
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.94 E-value=5.9e-27 Score=263.61 Aligned_cols=96 Identities=26% Similarity=0.377 Sum_probs=85.6
Q ss_pred ccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCe
Q psy3001 341 YSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDR 416 (602)
Q Consensus 341 ~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~ 416 (602)
......+|| |||||||+|||||+.+| ++|||||||++||+.+...+.+.++++. +++|||+|||+++.+..|||
T Consensus 537 ~~~~~~~LS--gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~ 614 (670)
T 3ux8_A 537 LGQPATTLS--GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADY 614 (670)
T ss_dssp TTCCGGGCC--HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSE
T ss_pred ccCCchhCC--HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCE
Confidence 345566778 69999999999999987 5999999999999999999999998875 47999999999998877999
Q ss_pred EEEE------eCceEEeecChhHHhhcc
Q psy3001 417 VLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 417 i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
|++| ++|++++.|+++++.+..
T Consensus 615 i~~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 615 IIDLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp EEEEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred EEEecCCcCCCCCEEEEecCHHHHHhCC
Confidence 9999 899999999999987653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.4e-26 Score=242.79 Aligned_cols=78 Identities=15% Similarity=0.168 Sum_probs=73.0
Q ss_pred ChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE----eCce
Q psy3001 351 NVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL----DKGL 424 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l----~~G~ 424 (602)
|||||||++|||+|+.+| ++|||||||++||+.+..++.+.|+++.+++|||+|||+++.+..||++++| ++|+
T Consensus 297 SgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l~k~~~~G~ 376 (415)
T 4aby_A 297 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQVEDGR 376 (415)
T ss_dssp CHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEEEEETTE
T ss_pred CHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEEEEeccCCc
Confidence 479999999999999999 9999999999999999999999999987789999999999887669999999 9999
Q ss_pred EEee
Q psy3001 425 VVEF 428 (602)
Q Consensus 425 i~~~ 428 (602)
++..
T Consensus 377 ~~~~ 380 (415)
T 4aby_A 377 TVSH 380 (415)
T ss_dssp EEEE
T ss_pred eEEE
Confidence 8754
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.93 E-value=1e-25 Score=255.99 Aligned_cols=109 Identities=27% Similarity=0.381 Sum_probs=92.5
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.+..+++.. ..+....+|| |||||||+|||||+++| ++|||||||++||+.+.+.+.+.|+++. +|.|||
T Consensus 785 ~~~~L~~vGL~~~~lgq~~~~LS--GGErQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVI 862 (916)
T 3pih_A 785 TLQVLHDVGLGYVKLGQPATTLS--GGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVI 862 (916)
T ss_dssp HHHHHHHTTGGGSBTTCCSTTCC--HHHHHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCchhhccCCccCCC--HHHHHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEE
Confidence 334444555432 2355666788 69999999999999875 7999999999999999999999998874 479999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
+|+|+++.+..||+|++| ++|+|++.|+++++++.+
T Consensus 863 vI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~ 904 (916)
T 3pih_A 863 VIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP 904 (916)
T ss_dssp EECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT
T ss_pred EEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC
Confidence 999999999889999999 899999999999998764
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=2.4e-26 Score=231.72 Aligned_cols=121 Identities=31% Similarity=0.469 Sum_probs=114.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..++..++|++|+||||+|.+|++||++|+.
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~ 149 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR 149 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHH
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.+++.+++.++|.||+|.++++|.+|
T Consensus 150 ~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~L 191 (306)
T 3nh6_A 150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKL 191 (306)
T ss_dssp TTSTTCCHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCC
T ss_pred hhcccCCHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCC
Confidence 654 45788999999999999999999999999999999886
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-26 Score=255.40 Aligned_cols=109 Identities=25% Similarity=0.332 Sum_probs=91.8
Q ss_pred HHHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhC---CCeEEEecccccCChhHHHHHHHHHHHhc-cccEEE
Q psy3001 328 QLKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRK---TKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVL 402 (602)
Q Consensus 328 ~~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~---p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi 402 (602)
..+.++.+++.. .......+|| |||||||+|||+|+++ |++|||||||++||+.+...+.+.|+++. +|.|||
T Consensus 710 ~~~~L~~~gL~~~~l~~~~~~LS--GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVI 787 (842)
T 2vf7_A 710 ALDTLREVGLGYLRLGQPATELS--GGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVI 787 (842)
T ss_dssp HHHHHHHTTCTTSBTTCCGGGCC--HHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHHcCCCcccccCCcccCC--HHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 344455555544 2355566777 6999999999999996 79999999999999999999999998874 579999
Q ss_pred EeeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 403 TIAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 403 ~itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
+|||+++++..||+|++| ++|+++..|+++++....
T Consensus 788 visHdl~~i~~aDrii~L~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 788 AVEHKMQVVAASDWVLDIGPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp EECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECHHHHTTCT
T ss_pred EEcCCHHHHHhCCEEEEECCCCCCCCCEEEEEcCHHHHHhCc
Confidence 999999999569999999 799999999999987653
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-25 Score=245.44 Aligned_cols=120 Identities=32% Similarity=0.526 Sum_probs=113.6
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDP 562 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~ 562 (602)
+++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|+++.+.+++|++++||||||.+|++||++|+..
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~ 439 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAY 439 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhc
Confidence 36999999999999999999999999999999999999999999999999998999999999999999999999999986
Q ss_pred CC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 563 VG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 563 ~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.. ..++++++++++.++++++++++|+||||.++++|.+|
T Consensus 440 ~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 440 AAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred cCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 53 46788999999999999999999999999999999886
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.91 E-value=7.2e-25 Score=247.03 Aligned_cols=108 Identities=26% Similarity=0.346 Sum_probs=91.9
Q ss_pred HHHHhhcccCC-cccccCCcCCCChhhHHHHHHHHHHhhCC---CeEEEecccccCChhHHHHHHHHHHHhc-cccEEEE
Q psy3001 329 LKRLESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKT---KILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLT 403 (602)
Q Consensus 329 ~~~l~~~~~~~-~~~~~~~~lsgs~Gq~Qrl~lAral~~~p---~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~ 403 (602)
.+.++.+++.. .......+|| |||||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|.|||+
T Consensus 826 ~~~L~~~gL~~~~l~~~~~~LS--GGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIv 903 (972)
T 2r6f_A 826 LETLYDVGLGYMKLGQPATTLS--GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLV 903 (972)
T ss_dssp HHHHHHTTCSSSBTTCCGGGCC--HHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred HHHHHHcCCCcccccCchhhCC--HHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEE
Confidence 34455555554 4455666777 69999999999999875 9999999999999999999999998874 4799999
Q ss_pred eeecccccccCCeEEEE------eCceEEeecChhHHhhcc
Q psy3001 404 IAHRLNTIIDSDRVLVL------DKGLVVEFDSPSVLMKNK 438 (602)
Q Consensus 404 itH~l~~i~~~d~i~~l------~~G~i~~~g~~~~l~~~~ 438 (602)
|||+++.+..||+|++| ++|+++..|+++++....
T Consensus 904 isHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~el~~~~ 944 (972)
T 2r6f_A 904 IEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEEVAEVK 944 (972)
T ss_dssp ECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHHHHHTCT
T ss_pred EcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHHHHHhCc
Confidence 99999998679999999 789999999999987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.7e-25 Score=238.29 Aligned_cols=184 Identities=11% Similarity=0.066 Sum_probs=126.2
Q ss_pred EEEeeeEEEE-------ecCCceEEEEeccCCChhHHHHHHhcccCCCCc-e-EEECCeecCCCChHHHhhccceecccc
Q psy3001 199 VEFKDYKVRY-------REGLELVGIVGRTGAGKSSLTLALFRIIEPADG-T-IIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 199 i~~~~vs~~~-------~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
++++|++++| .+| ++++|+|+||||||||+|+|+|++.|++| + |.+||. .++.++++||++
T Consensus 119 i~~~nl~~~y~~vsl~i~~G-e~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~ 188 (460)
T 2npi_A 119 KYIYNLHFMLEKIRMSNFEG-PRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCI 188 (460)
T ss_dssp HHHHHHHHHHHHHHHHSSSC-CCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCC
T ss_pred hhhhhhhehhhcCceEeCCC-CEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccch
Confidence 4555555554 445 99999999999999999999999999999 9 999982 367899999973
Q ss_pred hhhhhhccCCceeEeeec--ccc-eeeecc--ccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCccccc
Q psy3001 270 ATIFVICYSTPVFIFVIV--PVS-VLYFFI--QVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHF 344 (602)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~--~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 344 (602)
. ++.... ... .++... .+. ...+.+. +.+..++......
T Consensus 189 ~-----------l~~~~~~~tv~eni~~~~~~~~~-~~~~~~~----------------------~ll~~~gl~~~~~-- 232 (460)
T 2npi_A 189 S-----------ATPISDILDAQLPTWGQSLTSGA-TLLHNKQ----------------------PMVKNFGLERINE-- 232 (460)
T ss_dssp E-----------EEECCSCCCTTCTTCSCBCBSSC-CSSCCBC----------------------CEECCCCSSSGGG--
T ss_pred h-----------hcccccccchhhhhcccccccCc-chHHHHH----------------------HHHHHhCCCcccc--
Confidence 2 111000 000 000000 000 0000000 0001111211111
Q ss_pred CCcCCCChhhHHHHHHHHH--HhhCCCe----EEEec-ccccCChhHHHHHHHHHHHhccccEEEEeeeccc------cc
Q psy3001 345 GETVTGNVGQRQLICLARA--LLRKTKI----LILDE-ATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLN------TI 411 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAra--l~~~p~i----liLDE-pts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~------~i 411 (602)
...+| ||||||+++||| |+.+|++ ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.. ++
T Consensus 233 ~~~LS--gGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~ 307 (460)
T 2npi_A 233 NKDLY--LECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVK 307 (460)
T ss_dssp CHHHH--HHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHH
T ss_pred hhhhh--HHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHH
Confidence 34556 699999999999 9999999 99999 99999999 66666666554 679999999988 55
Q ss_pred cc-CCe-----EEEEe-CceEEeecChhHH
Q psy3001 412 ID-SDR-----VLVLD-KGLVVEFDSPSVL 434 (602)
Q Consensus 412 ~~-~d~-----i~~l~-~G~i~~~g~~~~l 434 (602)
.. ||+ |++|+ +|+++ .++++++
T Consensus 308 ~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 308 KTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 56 999 99999 99999 8887765
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.90 E-value=3.5e-24 Score=237.04 Aligned_cols=121 Identities=29% Similarity=0.465 Sum_probs=114.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||.+|++||++|+.
T Consensus 359 l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~ 438 (582)
T 3b60_A 359 LRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIA 438 (582)
T ss_dssp EEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHH
T ss_pred ccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC--CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG--ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~--~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+||+|.++++|.+|
T Consensus 439 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~L 481 (582)
T 3b60_A 439 YARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 481 (582)
T ss_dssp TTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred ccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCC
Confidence 643 46788999999999999999999999999999999886
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-23 Score=206.22 Aligned_cols=122 Identities=33% Similarity=0.575 Sum_probs=111.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++++||||+|.+|..||++|+
T Consensus 17 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~~tv~enl 96 (243)
T 1mv5_A 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (243)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEEcCCCccccccHHHHH
Confidence 35579999999999999999999999999999999999999999999999887777788899999999999999999999
Q ss_pred CCC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ...++++++++++.+++.++.+++|.++++.+++.+.+|
T Consensus 97 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 140 (243)
T 1mv5_A 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (243)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred hhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcC
Confidence 754 335677899999999999999999999999998887765
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=4.1e-24 Score=236.19 Aligned_cols=122 Identities=35% Similarity=0.609 Sum_probs=115.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||++|++||++|+
T Consensus 358 ~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 437 (587)
T 3qf4_A 358 VLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENL 437 (587)
T ss_dssp SEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHH
T ss_pred ceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~L 480 (587)
T 3qf4_A 438 KWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNF 480 (587)
T ss_dssp TTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSS
T ss_pred hccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCc
Confidence 8654 46889999999999999999999999999999999886
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=3.5e-24 Score=236.66 Aligned_cols=122 Identities=32% Similarity=0.488 Sum_probs=115.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||++|++||++|+
T Consensus 356 ~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni 435 (578)
T 4a82_A 356 ILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENI 435 (578)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHH
T ss_pred ceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHH
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... +..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 436 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~L 478 (578)
T 4a82_A 436 LLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 478 (578)
T ss_dssp GGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred hcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcC
Confidence 754 346788999999999999999999999999999999886
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=2.5e-24 Score=200.09 Aligned_cols=67 Identities=7% Similarity=0.052 Sum_probs=57.7
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChh----------------HHHHHHHHHHHhc-cccEEEEeeeccccccc
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLE----------------TDDLIQSTIRSEF-AHCTVLTIAHRLNTIID 413 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~----------------~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~ 413 (602)
|+|||||++||||+..+|++|+|||||++||+. ....+.+.++++. +|.|+|+|||+++++..
T Consensus 85 s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~ 164 (171)
T 4gp7_A 85 ESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEE 164 (171)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhh
Confidence 479999999999999999999999999999999 4477777776653 48999999999999876
Q ss_pred CCeE
Q psy3001 414 SDRV 417 (602)
Q Consensus 414 ~d~i 417 (602)
++++
T Consensus 165 ~~~~ 168 (171)
T 4gp7_A 165 VVFE 168 (171)
T ss_dssp EEEE
T ss_pred hhhc
Confidence 6554
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.8e-23 Score=205.56 Aligned_cols=122 Identities=32% Similarity=0.450 Sum_probs=111.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+||||+|.+|..||++|+
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 103 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNI 103 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcEEEEeCCCccccccHHHHH
Confidence 35579999999999999999999999999999999999999999999999888877888899999999999999999999
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..++++++++++.+++.++.+++|.+|++.+++.+.+|
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~L 146 (247)
T 2ff7_A 104 SLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 146 (247)
T ss_dssp TTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCC
T ss_pred hccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCC
Confidence 7543 34677899999999999999999999999999888775
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=7.3e-24 Score=231.71 Aligned_cols=260 Identities=13% Similarity=0.070 Sum_probs=155.4
Q ss_pred cEEEeeeEE-EEecCCceEEEEeccCCChhHHHHH--HhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKV-RYREGLELVGIVGRTGAGKSSLTLA--LFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~-~~~~~~e~~~lvG~sGsGKSTL~~l--l~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++++++ .+++| ++++|+|+||||||||+++ ++|+++|++|.|+++|.+. .......++.+++++|++...
T Consensus 25 ~~~Ld~i~~G~i~~G-e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~~~-- 100 (525)
T 1tf7_A 25 IEGFDDISHGGLPIG-RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLVDE-- 100 (525)
T ss_dssp CTTHHHHTTSSEETT-SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHHHT--
T ss_pred chhHHHhcCCCCCCC-eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhhcc--
Confidence 346899999 89998 9999999999999999999 7899999999999999873 223344567899999975421
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
+.++.... .. .....+. .... +=.
T Consensus 101 -----~~l~~~~~---------~~----~~~~~~~-----l~~~---------------------------------~l~ 124 (525)
T 1tf7_A 101 -----GKLFILDA---------SP----DPEGQEV-----VGGF---------------------------------DLS 124 (525)
T ss_dssp -----TSEEEEEC---------CC----CSSCCSC-----CSSH---------------------------------HHH
T ss_pred -----CcEEEEec---------Cc----ccchhhh-----hccc---------------------------------CHH
Confidence 00110000 00 0000000 0000 001
Q ss_pred HHHHHHHHHHh-hCCCeEEEeccccc-----CChhHHHHHHHHHHHhc-cccEEEEeeeccccc---------cc-CCeE
Q psy3001 355 RQLICLARALL-RKTKILILDEATAA-----IDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTI---------ID-SDRV 417 (602)
Q Consensus 355 ~Qrl~lAral~-~~p~iliLDEpts~-----LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i---------~~-~d~i 417 (602)
.+.-.++++|. .+|++++|||||+. +|+...+.+.+.++.+. .|+|+|+++|+++.+ .. ||+|
T Consensus 125 ~~~~~~~~~LS~g~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~v 204 (525)
T 1tf7_A 125 ALIERINYAIQKYRARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNV 204 (525)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEE
Confidence 12223333442 46889999999985 58888899999888764 479999999999985 44 9999
Q ss_pred EEEeC----ceEEeecChhHHhhcc--hhHHHHHHHhhhhhHHHHHHHhhhhhHHHHHHHHHHHhcccccc------cce
Q psy3001 418 LVLDK----GLVVEFDSPSVLMKNK--ASIFYSMAKDAGLAWLAVRLETVGNLITFSAALLAVLSKETLNA------GLV 485 (602)
Q Consensus 418 ~~l~~----G~i~~~g~~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~ 485 (602)
++|++ |+....-......... ...+.......+....+ ....... .......+.. ..+
T Consensus 205 i~L~~~~~~G~~~r~l~~~k~r~~~~~~~~~~~~i~~~gi~v~p--~~~~~~~--------~~~~~~~l~~g~~~ld~vL 274 (525)
T 1tf7_A 205 VILRNVLEGERRRRTLEILKLRGTSHMKGEYPFTITDHGINIFP--LGAMRLT--------QRSSNVRVSSGVVRLDEMC 274 (525)
T ss_dssp EEEEEECSTTCCEEEEEEEEETTSCCCCSEEEEEEETTEEEECC--TTTCCSC--------CCCCCCEECCSCHHHHHHT
T ss_pred EEEEEEccCCceeEEEEEEECCCCCCCCceEEEEEcCCCEEEEe--ccccccc--------cccccceeecChHHHHHHh
Confidence 99998 4332111100000000 00000000000000000 0000000 0000011110 013
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCce--EEECCe
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT--IIIDGV 528 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~--I~i~g~ 528 (602)
+..+.+|++++|+|+||||||||++.++|..+++ |+ +.+.++
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~vi~~~~e 318 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KERAILFAYE 318 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCEEEEESS
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCEEEEEEe
Confidence 5689999999999999999999999999999875 65 455543
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-24 Score=237.63 Aligned_cols=121 Identities=33% Similarity=0.572 Sum_probs=114.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++..+.+++|++++||||||.+|++||++|+.
T Consensus 371 l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~ 450 (598)
T 3qf4_B 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLK 450 (598)
T ss_dssp CCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHH
T ss_pred ccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred CCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ..++++++++++.++++++++++|+|++|.++++|.+|
T Consensus 451 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~L 492 (598)
T 3qf4_B 451 YGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDL 492 (598)
T ss_dssp SSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTS
T ss_pred cCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCC
Confidence 653 46788999999999999999999999999999999886
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=3.7e-22 Score=204.67 Aligned_cols=79 Identities=16% Similarity=0.317 Sum_probs=68.9
Q ss_pred CcCCCChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeE--EE
Q psy3001 346 ETVTGNVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRV--LV 419 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i--~~ 419 (602)
..+| +|||||++|||||+ .+|++|||||||++||+.....+.+.+++..++.|+|++||+.+.+..||++ ++
T Consensus 218 ~~lS--~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~ 295 (322)
T 1e69_A 218 SLLS--GGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVT 295 (322)
T ss_dssp GGSC--HHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEE
T ss_pred hhCC--HHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEE
Confidence 4556 69999999999997 6899999999999999999999999998886678999999997765569987 88
Q ss_pred EeCceEE
Q psy3001 420 LDKGLVV 426 (602)
Q Consensus 420 l~~G~i~ 426 (602)
|.+|...
T Consensus 296 ~~~g~s~ 302 (322)
T 1e69_A 296 MVNGVSA 302 (322)
T ss_dssp ESSSCEE
T ss_pred EeCCEEE
Confidence 8888653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.87 E-value=2.1e-24 Score=206.17 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=91.2
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecc
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~ 288 (602)
.+| ++++|+||||||||||+++|+|+ +|++|+|.. .++. .+...+++.++|+||++... +.
T Consensus 20 ~~G-e~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~-~~~~~~~~~ig~v~q~~~en---------l~----- 80 (208)
T 3b85_A 20 DTN-TIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILT-RPAVEAGEKLGFLPGTLNEK---------ID----- 80 (208)
T ss_dssp HHC-SEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEE-ECSCCTTCCCCSSCC---------------C-----
T ss_pred cCC-CEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEec-CCchhhhcceEEecCCHHHH---------HH-----
Confidence 345 99999999999999999999999 999999943 2222 12223577899999973100 00
Q ss_pred cceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCC
Q psy3001 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT 368 (602)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p 368 (602)
.+..+....+ . .... ..+..+.++ . . .|||||++|||||+.+|
T Consensus 81 ------------~~~~~~~~~~-~-~~~~-------~~~~~~~l~---------~-----g--lGq~qrv~lAraL~~~p 123 (208)
T 3b85_A 81 ------------PYLRPLHDAL-R-DMVE-------PEVIPKLME---------A-----G--IVEVAPLAYMRGRTLND 123 (208)
T ss_dssp ------------TTTHHHHHHH-T-TTSC-------TTHHHHHHH---------T-----T--SEEEEEGGGGTTCCBCS
T ss_pred ------------HHHHHHHHHH-H-Hhcc-------HHHHHHHHH---------h-----C--CchHHHHHHHHHHhcCC
Confidence 0000000000 0 0000 000111111 1 1 29999999999999999
Q ss_pred CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 369 KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 369 ~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
++|||||||++ +...+.+.|+++.+++|+| +||+++.+..
T Consensus 124 ~lllLDEPts~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~ 163 (208)
T 3b85_A 124 AFVILDEAQNT----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL 163 (208)
T ss_dssp EEEEECSGGGC----CHHHHHHHHTTBCTTCEEE-EEEC------
T ss_pred CEEEEeCCccc----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC
Confidence 99999999999 7888888888874578999 9999987643
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.2e-22 Score=211.16 Aligned_cols=122 Identities=37% Similarity=0.654 Sum_probs=114.3
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..++++||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...++..+|++++||||+|.+|..||++|
T Consensus 35 ~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~~tv~en 113 (390)
T 3gd7_A 35 AILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKN 113 (390)
T ss_dssp CSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHHTEEEESCCCCCCSEEHHHH
T ss_pred EEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhCCEEEEcCCcccCccCHHHH
Confidence 34567999999999999999999999999999999998 89999999999999999889999999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+.+.....+++++++++.++|.++.++.|..+++.++++|.+|
T Consensus 114 l~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~L 156 (390)
T 3gd7_A 114 LDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVL 156 (390)
T ss_dssp HCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTS
T ss_pred hhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccC
Confidence 9866667888999999999999999999999999999999876
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=7.3e-25 Score=220.12 Aligned_cols=206 Identities=14% Similarity=0.163 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCCCCCCCCC-CCcEEEeeeEEEE------------ecCCce
Q psy3001 148 TQTLNWLVRMTSDVETNIVAVERIKEYGETPQEAEWVNDKKPKDEWPE-KGEVEFKDYKVRY------------REGLEL 214 (602)
Q Consensus 148 ~~~l~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~vs~~~------------~~~~e~ 214 (602)
..++..+..++..++.+..+.+|+.++++.+++... . ...|+. .+.++++||+|+| ++| ++
T Consensus 55 ~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~--~---~~~~~~~~~~i~~~~vs~~y~~~vL~~vsl~i~~G-e~ 128 (305)
T 2v9p_A 55 AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLAT--G---EGSWKSILTFFNYQNIELITFINALKLWLKGIPKK-NC 128 (305)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCC--S---SCCTHHHHHHHHHTTCCHHHHHHHHHHHHHTCTTC-SE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccC--C---CCcccccCCeEEEEEEEEEcChhhhccceEEecCC-CE
Confidence 467888888999999999999999999875443211 0 011111 1235566666555 455 99
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeee
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (602)
++|+||||||||||+++|+|++ +|+|. ++++|++ .+|
T Consensus 129 vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------~~v~q~~-----------~lf----------- 165 (305)
T 2v9p_A 129 LAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------SFANHKS-----------HFW----------- 165 (305)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH---TCEEE------------------CGGGTTS-----------GGG-----------
T ss_pred EEEECCCCCcHHHHHHHHhhhc---CceEE------------------EEecCcc-----------ccc-----------
Confidence 9999999999999999999999 89984 3455652 211
Q ss_pred ccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEe
Q psy3001 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374 (602)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLD 374 (602)
..++.. +++.... .... ...+.++. .... .+. +..+| |||||| ||||+++|+|||
T Consensus 166 --~~ti~~-----~ni~~~~--~~~~---~~~~~i~~---~L~~-gld--g~~LS--gGqkQR---ARAll~~p~iLl-- 220 (305)
T 2v9p_A 166 --LASLAD-----TRAALVD--DATH---ACWRYFDT---YLRN-ALD--GYPVS--IDRKHK---AAVQIKAPPLLV-- 220 (305)
T ss_dssp --GGGGTT-----CSCEEEE--EECH---HHHHHHHH---TTTG-GGG--TCCEE--CCCSSC---CCCEECCCCEEE--
T ss_pred --cccHHH-----HhhccCc--cccH---HHHHHHHH---HhHc-cCC--ccCcC--HHHHHH---HHHHhCCCCEEE--
Confidence 111110 0000000 0000 01111121 1111 111 66777 599999 999999999999
Q ss_pred cccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 375 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
||+||+.++..+.. ++||++.+..||+| +|++|++++.|+++++ ...|..++.
T Consensus 221 --Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~ 273 (305)
T 2v9p_A 221 --TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWG 273 (305)
T ss_dssp --EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTT
T ss_pred --ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHH
Confidence 99999999876641 39999998889999 9999999999999988 445555443
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-21 Score=202.58 Aligned_cols=81 Identities=23% Similarity=0.344 Sum_probs=72.8
Q ss_pred CCcCCCChhhHHHHHHHHHHh------hCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeE
Q psy3001 345 GETVTGNVGQRQLICLARALL------RKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i 417 (602)
..++| ||||||++|||||+ .+|++|||||||++||+.+...+.+.++++. .|+|||+|||+++....||++
T Consensus 277 ~~~LS--gGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 277 ARGLS--GGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp GGGSC--HHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred chhCC--HHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 34566 69999999999999 7999999999999999999999999998875 479999999999986669999
Q ss_pred EEEeCceEEe
Q psy3001 418 LVLDKGLVVE 427 (602)
Q Consensus 418 ~~l~~G~i~~ 427 (602)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999864
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.6e-22 Score=198.78 Aligned_cols=121 Identities=29% Similarity=0.521 Sum_probs=108.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++| +|+|.++|+++...+...+|++|+||||+|.+|..||++|+
T Consensus 35 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl 113 (260)
T 2ghi_A 35 TLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNI 113 (260)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred eeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhccEEEEcCCCcccccCHHHHH
Confidence 35579999999999999999999999999999999987 89999999999888777888899999999999999999998
Q ss_pred CCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ...++++.++++.+++.++++.+|.++++.++..+.+|
T Consensus 114 ~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~L 156 (260)
T 2ghi_A 114 LYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKL 156 (260)
T ss_dssp HTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCC
T ss_pred hccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcC
Confidence 6532 34567899999999999999999999999888877765
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=5.6e-22 Score=197.47 Aligned_cols=121 Identities=24% Similarity=0.406 Sum_probs=105.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+|++|+||||+|.+|..||++|+.
T Consensus 35 l~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~enl~ 114 (271)
T 2ixe_A 35 LQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIA 114 (271)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHHH
T ss_pred eEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhccEEEEecCCccccccHHHHHh
Confidence 45799999999999999999999999999999999999999999999998877777888999999999999999999996
Q ss_pred CCCC-CcH-HHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 562 PVGE-SSD-EAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 562 ~~~~-~~~-~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.... ..+ +++.++++..++.++++.+|.++++.++..+.+|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~L 157 (271)
T 2ixe_A 115 YGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQL 157 (271)
T ss_dssp TTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTS
T ss_pred hhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCC
Confidence 5322 233 6677888888999999999888888777666554
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-22 Score=186.41 Aligned_cols=147 Identities=13% Similarity=0.151 Sum_probs=100.0
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
.++|+||||||||||+++|+|++. |.++|.+.........++.+++++|++.. ...++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~~~-------~~~~~---------- 59 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITTEG-------KKKIF---------- 59 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEETTC-------CEEEE----------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecCcH-------HHHHH----------
Confidence 489999999999999999999985 45666554333211456789999986310 00000
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHH-----HhhCC
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARA-----LLRKT 368 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAra-----l~~~p 368 (602)
. . .. . ...+........+| +|||||++|||| ++.+|
T Consensus 60 -------------~-~----~~--~-----------------~~~~~~~~~~~~lS--gG~~qr~~la~aa~~~~l~~~p 100 (178)
T 1ye8_A 60 -------------S-S----KF--F-----------------TSKKLVGSYGVNVQ--YFEELAIPILERAYREAKKDRR 100 (178)
T ss_dssp -------------E-E----TT--C-----------------CCSSEETTEEECHH--HHHHHHHHHHHHHHHHHHHCTT
T ss_pred -------------H-h----hc--C-----------------CccccccccccCcC--HHHHHHHHHHhhccccccccCC
Confidence 0 0 00 0 00012334445566 699999999996 99999
Q ss_pred CeEEEec--ccccCChhHHHHHHHHHHHhccccEEEEeee---ccccccc-CCeEEEEeCceEEe
Q psy3001 369 KILILDE--ATAAIDLETDDLIQSTIRSEFAHCTVLTIAH---RLNTIID-SDRVLVLDKGLVVE 427 (602)
Q Consensus 369 ~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi~itH---~l~~i~~-~d~i~~l~~G~i~~ 427 (602)
++++||| ||+++|+...+.+.+.+++ .+.|+|+++| +.+.+.. ||+ .+|++++
T Consensus 101 ~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 101 KVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp CEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred CEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 9999999 9999999999999888866 4567888885 6777766 776 4556654
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.81 E-value=6.5e-22 Score=202.73 Aligned_cols=130 Identities=17% Similarity=0.159 Sum_probs=97.1
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++++++...+| +.++|+|+||||||||+++|+|+++|++|.|.++|.+..... .+++.++
T Consensus 161 l~~l~~~i~~g-~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~--~~~~~i~----------------- 220 (330)
T 2pt7_A 161 ISAIKDGIAIG-KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFK--HHKNYTQ----------------- 220 (330)
T ss_dssp HHHHHHHHHHT-CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCS--SCSSEEE-----------------
T ss_pred HhhhhhhccCC-CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccc--cchhEEE-----------------
Confidence 44556666666 899999999999999999999999999999999985311100 0000000
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICL 360 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~l 360 (602)
. .. + +||+||++|
T Consensus 221 ---------------------------------~--------------------------~~-------g-gg~~~r~~l 233 (330)
T 2pt7_A 221 ---------------------------------L--------------------------FF-------G-GNITSADCL 233 (330)
T ss_dssp ---------------------------------E--------------------------EC-------B-TTBCHHHHH
T ss_pred ---------------------------------E--------------------------Ee-------C-CChhHHHHH
Confidence 0 00 0 499999999
Q ss_pred HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc-cEEEEeeecccccccCCeEEEEeCce
Q psy3001 361 ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDSDRVLVLDKGL 424 (602)
Q Consensus 361 Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~~d~i~~l~~G~ 424 (602)
||||..+|++++|||||+. .+.+.++....+ .|+|+++|+.+....|||+++|.+|.
T Consensus 234 a~aL~~~p~ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 234 KSCLRMRPDRIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp HHHTTSCCSEEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred HHHhhhCCCEEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999999999999999982 234556665555 58999999999555599999888774
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.81 E-value=2.1e-20 Score=182.23 Aligned_cols=103 Identities=23% Similarity=0.306 Sum_probs=86.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh----hccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Qdp~lf~~-T 555 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..++ |++++||||+|.+|.. |
T Consensus 20 ~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~t 99 (235)
T 3tif_A 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (235)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred eEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCCc
Confidence 3567999999999999999999999999999999999999999999999998886553 4469999999999887 9
Q ss_pred hhcccCC----C--CCC----cHHHHHHHHHHcCCCcc
Q psy3001 556 LRLNLDP----V--GES----SDEAIWKALELAHLNTF 583 (602)
Q Consensus 556 v~~nl~~----~--~~~----~~~~i~~al~~~~l~~~ 583 (602)
|++|+.. . ... ..+++.++++.+++.+.
T Consensus 100 v~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 137 (235)
T 3tif_A 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEER 137 (235)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChh
Confidence 9999842 1 111 23458889999999764
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=182.00 Aligned_cols=108 Identities=17% Similarity=0.155 Sum_probs=93.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|+ |+|.++|+++...+..++|++++||||+|.+|.. ||++|+
T Consensus 16 l~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 94 (249)
T 2qi9_C 16 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 94 (249)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTCBHHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEEECCCCccCCCCcHHHHH
Confidence 45799999999999999999999999999999999999 9999999999888777888899999999988865 999998
Q ss_pred CCCC--CCcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG--ESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~--~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... ..+++++.++++.+++.++.++.|..
T Consensus 95 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (249)
T 2qi9_C 95 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 126 (249)
T ss_dssp HTTCSSTTCHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHhhccCCcHHHHHHHHHHcCChhHhcCChhh
Confidence 6432 12377899999999998877665543
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-20 Score=180.16 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=95.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++| +++||||+|.+|+.||++|+
T Consensus 23 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i~~v~q~~~~~~~tv~enl 89 (229)
T 2pze_A 23 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQFSWIMPGTIKENI 89 (229)
T ss_dssp SEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CEEEECSSCCCCSBCHHHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EEEEEecCCcccCCCHHHHh
Confidence 35579999999999999999999999999999999999999999998 49999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.......+....++++.+++.++++++|.+.++.+++.+.+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 131 (229)
T 2pze_A 90 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 131 (229)
T ss_dssp HTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTS
T ss_pred hccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcC
Confidence 764334455677788899999999999988888888777665
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.5e-20 Score=187.09 Aligned_cols=111 Identities=23% Similarity=0.333 Sum_probs=91.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC--CChhhhhccceEecCCc--cccccch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT--LGLHTLRSRLTIIPQDP--VLFSGTL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~--~~~~~lr~~i~~V~Qdp--~lf~~Tv 556 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+..++|++||||||+| ++|..||
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~tv 102 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASV 102 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSSBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcEEEEEcCcccccccCcH
Confidence 3557999999999999999999999999999999999999999999999852 23456788999999998 5778899
Q ss_pred hcccCCC---CCC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 557 RLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 557 ~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
++|+... ... ..+++.++++.++|.++.++.|..|
T Consensus 103 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~L 144 (275)
T 3gfo_A 103 YQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCL 144 (275)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccC
Confidence 9998521 111 2346889999999988777665543
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-22 Score=195.02 Aligned_cols=177 Identities=10% Similarity=0.025 Sum_probs=108.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhcc
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICY 277 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~ 277 (602)
-.++|+||++.+| ++++|+||||||||||+++|+|++ | |+|.+ |.++....+ ...++.++|++|++..+--...
T Consensus 11 ~~l~~isl~i~~G-~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 85 (218)
T 1z6g_A 11 SSGLVPRGSMNNI-YPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLK 85 (218)
T ss_dssp -----------CC-CCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHH
T ss_pred ccccCCceecCCC-CEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhh
Confidence 4689999999998 999999999999999999999999 5 99999 877654332 2245689999998653221110
Q ss_pred CCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 278 STPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
...+++.. .+..+. .... . ....+.++ .. . .......+| |||+||
T Consensus 86 ~~~~l~~~-------------------~~~~~~---~g~~-~---~~i~~~l~---~~-~---~~il~~~ls--ggq~qR 130 (218)
T 1z6g_A 86 NEDFLEYD-------------------NYANNF---YGTL-K---SEYDKAKE---QN-K---ICLFEMNIN--GVKQLK 130 (218)
T ss_dssp TTCEEEEE-------------------EETTEE---EEEE-H---HHHHHHHH---TT-C---EEEEEECHH--HHHHHT
T ss_pred ccchhhhh-------------------hccccc---CCCc-H---HHHHHHHh---CC-C---cEEEEecHH--HHHHHH
Confidence 11122111 110000 0000 0 01111111 10 0 001113344 799999
Q ss_pred HHH-----HHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 358 ICL-----ARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 358 l~l-----Aral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+++ ||+|+.+|++++|||||+++|.+++..+.+.+....++.| ++| +..+|.|+++++
T Consensus 131 ~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 131 KSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp TCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999 8999999999999999999999999999998887666656 677 455898887754
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.80 E-value=3.1e-20 Score=190.33 Aligned_cols=110 Identities=25% Similarity=0.361 Sum_probs=92.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+ +|++||||||+|.+|.. ||
T Consensus 43 aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~TV 122 (366)
T 3tui_C 43 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 122 (366)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTSCH
T ss_pred EEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCCCH
Confidence 356799999999999999999999999999999999999999999999999887654 47789999999998865 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ...+++.++|+.++|.++.++.|..
T Consensus 123 ~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~ 163 (366)
T 3tui_C 123 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 163 (366)
T ss_dssp HHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTT
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 9998521 11 1235689999999998876655543
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.80 E-value=8.2e-20 Score=181.18 Aligned_cols=108 Identities=19% Similarity=0.243 Sum_probs=94.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccc-cccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL-FSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l-f~~Tv~~nl 560 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+++++.++|+||++.+ |..||++|+
T Consensus 27 L~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~e~l 106 (266)
T 4g1u_C 27 INDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAVMRQYSELAFPFSVSEVI 106 (266)
T ss_dssp EEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEEECSCCCCCSCCBHHHHH
T ss_pred EEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEEEecCCccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999999988888899999999976 567999998
Q ss_pred CCC-----CCCcHHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPV-----GESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~-----~~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
... .....+++.++++.+++.++.++.|.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 140 (266)
T 4g1u_C 107 QMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYR 140 (266)
T ss_dssp HGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGG
T ss_pred HhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcc
Confidence 421 22345679999999999887666554
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.4e-20 Score=182.59 Aligned_cols=109 Identities=21% Similarity=0.317 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC--CCChhhhhccceEecCCcccccc-chhc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ......+|++++||||+|.+|.. ||++
T Consensus 40 L~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e 119 (263)
T 2olj_A 40 LKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLN 119 (263)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTSCHHH
T ss_pred EEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCCCHHH
Confidence 45799999999999999999999999999999999999999999999985 23345567889999999998876 9999
Q ss_pred ccCCC----CCCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 559 NLDPV----GESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 559 nl~~~----~~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|+... ...+ ++++.++++.++|.++.++.|..
T Consensus 120 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~ 159 (263)
T 2olj_A 120 NITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDS 159 (263)
T ss_dssp HHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 98531 1111 35688999999998876665543
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-20 Score=174.96 Aligned_cols=103 Identities=20% Similarity=0.365 Sum_probs=87.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+++++||||+|.+|.+ ||++|
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~~v~q~~~~~~~~tv~en 98 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIFFLPEEIIVPRKISVEDY 98 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEEEEeCCCcCCCCCCHHHH
Confidence 355799999999999999999999999999999999999999999999886 257789999999998876 99999
Q ss_pred cCCC----C-CCcHHHHHHHHHHcCCCcccccccc
Q psy3001 560 LDPV----G-ESSDEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 560 l~~~----~-~~~~~~i~~al~~~~l~~~~~~~~~ 589 (602)
+... . ...++++.++++.+++.++ ++.|.
T Consensus 99 l~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~ 132 (214)
T 1sgw_A 99 LKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLG 132 (214)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGG
T ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChh
Confidence 8521 1 2236779999999999876 55443
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.79 E-value=4.2e-20 Score=178.88 Aligned_cols=109 Identities=26% Similarity=0.270 Sum_probs=90.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh---hh-ccceEecCCcccccc-ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LR-SRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~---lr-~~i~~V~Qdp~lf~~-Tv 556 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+ +| ++++||||+|.+|.. ||
T Consensus 20 l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv 99 (224)
T 2pcj_A 20 LKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTA 99 (224)
T ss_dssp EEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCTTSCH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCCCCCH
Confidence 45799999999999999999999999999999999999999999999998776543 33 679999999988865 99
Q ss_pred hcccCCC----CC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPV----GE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+... .. ..++++.++++.+++.++.++.|..
T Consensus 100 ~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 140 (224)
T 2pcj_A 100 LENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYE 140 (224)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 9998521 11 1235689999999998877665543
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=9.6e-20 Score=179.52 Aligned_cols=108 Identities=20% Similarity=0.330 Sum_probs=91.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++++||||+|.+|.. ||++|+
T Consensus 31 l~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~~v~q~~~l~~~ltv~enl 109 (256)
T 1vpl_A 31 LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYL 109 (256)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCCCTTSBHHHHH
T ss_pred EEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEEEEcCCCCCCCCCcHHHHH
Confidence 457999999999999999999999999999999999999999999999876 445677889999999998876 999998
Q ss_pred CCC----CCCc---HHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV----GESS---DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~----~~~~---~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... .... ++++.++++.++|.++.++.|..
T Consensus 110 ~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~ 146 (256)
T 1vpl_A 110 RFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST 146 (256)
T ss_dssp HHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGG
T ss_pred HHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhh
Confidence 531 1111 25688999999999887766543
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-19 Score=185.55 Aligned_cols=111 Identities=26% Similarity=0.318 Sum_probs=91.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC--ChhhhhccceEecCCcccccc-chh
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL--GLHTLRSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~--~~~~lr~~i~~V~Qdp~lf~~-Tv~ 557 (602)
.++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .....+++||||||++.+|.. ||+
T Consensus 19 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~p~ltV~ 98 (359)
T 3fvq_A 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVY 98 (359)
T ss_dssp EEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCCEEECTTCCCCTTSCHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCEEEEeCCCcCCCCCCHH
Confidence 35579999999999999999999999999999999999999999999998432 223446789999999999976 999
Q ss_pred cccCCCCC----C---cHHHHHHHHHHcCCCccccccccCC
Q psy3001 558 LNLDPVGE----S---SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 558 ~nl~~~~~----~---~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+|+..... . .++++.++++.++|.++.++.|..|
T Consensus 99 eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~L 139 (359)
T 3fvq_A 99 RNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHEL 139 (359)
T ss_dssp HHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGS
T ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhC
Confidence 99864211 1 2356999999999998877666543
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=8.1e-20 Score=178.81 Aligned_cols=108 Identities=23% Similarity=0.339 Sum_probs=88.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..++ +++++||||+|.+|.+ ||++|
T Consensus 22 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ltv~en 101 (240)
T 1ji0_A 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYEN 101 (240)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHHH
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEEEEecCCccCCCCcHHHH
Confidence 457999999999999999999999999999999999999999999999987776554 4569999999999987 99999
Q ss_pred cCCCC----CC--cHHHHHHHHHHcC-CCcccccccc
Q psy3001 560 LDPVG----ES--SDEAIWKALELAH-LNTFVSNLPA 589 (602)
Q Consensus 560 l~~~~----~~--~~~~i~~al~~~~-l~~~~~~~~~ 589 (602)
+.... .. ..+.+.++++.++ +.++.++.|.
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~ 138 (240)
T 1ji0_A 102 LMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGG 138 (240)
T ss_dssp HHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSS
T ss_pred HHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChh
Confidence 85321 11 2345788888884 8776655544
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.5e-20 Score=177.90 Aligned_cols=109 Identities=26% Similarity=0.357 Sum_probs=92.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++| +++||||+|.+|..||++|+
T Consensus 20 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~~~~~tv~enl 86 (237)
T 2cbz_A 20 TLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVAYVPQQAWIQNDSLRENI 86 (237)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEEEECSSCCCCSEEHHHHH
T ss_pred eeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEEEEcCCCcCCCcCHHHHh
Confidence 35579999999999999999999999999999999999999999998 49999999998989999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
.......+++.+++++.+++.+.++.+|.++++.++..+.+|
T Consensus 87 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~L 128 (237)
T 2cbz_A 87 LFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNL 128 (237)
T ss_dssp HTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCC
T ss_pred hCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCC
Confidence 754333445567788888888777778888777777766654
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.9e-19 Score=185.77 Aligned_cols=109 Identities=17% Similarity=0.217 Sum_probs=92.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...++. +++||||||++.+|+. ||++|
T Consensus 18 ~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~VfQ~~~l~p~ltV~en 95 (381)
T 3rlf_A 18 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAEN 95 (381)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEEEecCCcCCCCCCHHHH
Confidence 35579999999999999999999999999999999999999999999999887765 4679999999999976 99999
Q ss_pred cCCC---CCC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPV---GES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+... ... .++++.++++.++|.++.++.|..|
T Consensus 96 i~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~L 134 (381)
T 3rlf_A 96 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKAL 134 (381)
T ss_dssp HTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHC
Confidence 9632 111 2456899999999988776665543
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.78 E-value=2.4e-19 Score=175.07 Aligned_cols=106 Identities=25% Similarity=0.354 Sum_probs=89.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++...+ ..+++++||||+|.+|.. ||++|+
T Consensus 15 l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v~q~~~l~~~ltv~enl 91 (240)
T 2onk_A 15 RLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFVPQDYALFPHLSVYRNI 91 (240)
T ss_dssp EEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCCCSSCCCCTTSCHHHHH
T ss_pred EeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEEcCCCccCCCCcHHHHH
Confidence 4579999999 999999999999999999999999999999999999987533 346789999999999877 999998
Q ss_pred CCCCCC-----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVGES-----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~~~-----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
...... .++++.++++.+++.++.++.|..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 126 (240)
T 2onk_A 92 AYGLRNVERVERDRRVREMAEKLGIAHLLDRKPAR 126 (240)
T ss_dssp HTTCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGG
T ss_pred HHHHHHcCCchHHHHHHHHHHHcCCHHHhcCChhh
Confidence 643221 245689999999998877666543
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-19 Score=177.92 Aligned_cols=109 Identities=21% Similarity=0.206 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh-hhhccceEecCCccccc-cchhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPVLFS-GTLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~lf~-~Tv~~n 559 (602)
++++||++++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+.. ..|++++||||+|.+|. .||++|
T Consensus 23 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~en 102 (257)
T 1g6h_A 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN 102 (257)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred EeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEEEEccCCccCCCCcHHHH
Confidence 4579999999999999999999999999999999999999999999999876543 45678999999998886 499999
Q ss_pred cCCC------C-----------CC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPV------G-----------ES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~------~-----------~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+... . .. ..+++.++++.++|.++.++.|..
T Consensus 103 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 153 (257)
T 1g6h_A 103 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 153 (257)
T ss_dssp HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchh
Confidence 8421 1 11 134588999999998877666543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.3e-19 Score=184.50 Aligned_cols=107 Identities=20% Similarity=0.278 Sum_probs=91.4
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 96 (359)
T 2yyz_A 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGMVFQNYALYPHMTVFENI 96 (359)
T ss_dssp EEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECSSCCCCTTSCHHHHH
T ss_pred EeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 5689999999999976 999998
Q ss_pred CCCC---CCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---ESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... ..+ ++++.++++.++|.++.++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 133 (359)
T 2yyz_A 97 AFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQ 133 (359)
T ss_dssp HGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 6421 111 35689999999999887766653
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-19 Score=181.25 Aligned_cols=109 Identities=14% Similarity=0.119 Sum_probs=89.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC--CCChhhhhccceEecCCccc-ccc--ch
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR--TLGLHTLRSRLTIIPQDPVL-FSG--TL 556 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~--~~~~~~lr~~i~~V~Qdp~l-f~~--Tv 556 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|++|+||||+|.+ |.. ||
T Consensus 37 L~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ltv 116 (279)
T 2ihy_A 37 LKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERV 116 (279)
T ss_dssp EEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTEEEECHHHHTTSCTTSBH
T ss_pred EEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcEEEEEcCcccccCCCCCH
Confidence 45799999999999999999999999999999999999999999999987 66667788899999999965 544 99
Q ss_pred hcccCCCC--------CCc---HHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPVG--------ESS---DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~~--------~~~---~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+.... ... .+++.++++.+++.++.++.|..
T Consensus 117 ~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 161 (279)
T 2ihy_A 117 IDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGY 161 (279)
T ss_dssp HHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 99985321 112 34588999999998876665543
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.77 E-value=2e-19 Score=178.77 Aligned_cols=108 Identities=25% Similarity=0.355 Sum_probs=90.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc--cccccchhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP--VLFSGTLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp--~lf~~Tv~~ 558 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++... .+|++++||||+| .++..||++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~i~~v~q~~~~~~~~~tv~e 98 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRNIGIAFQYPEDQFFAERVFD 98 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGGEEEECSSGGGGCCCSSHHH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---HhhhhEEEEeccchhhcCCCcHHH
Confidence 35579999999999999999999999999999999999999999999988642 5678899999997 456789999
Q ss_pred ccCCC-----C-CCcHHHHHHHHHHcCCC--ccccccccCC
Q psy3001 559 NLDPV-----G-ESSDEAIWKALELAHLN--TFVSNLPARL 591 (602)
Q Consensus 559 nl~~~-----~-~~~~~~i~~al~~~~l~--~~~~~~~~~l 591 (602)
|+... . ....+++.++++.++|. ++.++.|..|
T Consensus 99 nl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~L 139 (266)
T 2yz2_A 99 EVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFL 139 (266)
T ss_dssp HHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhC
Confidence 98531 1 12356799999999999 8877766543
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-19 Score=183.57 Aligned_cols=106 Identities=19% Similarity=0.292 Sum_probs=85.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 27 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 104 (372)
T 1v43_A 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYENI 104 (372)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 5689999999999976 999998
Q ss_pred CCCCC---Cc----HHHHHHHHHHcCCCcccccccc
Q psy3001 561 DPVGE---SS----DEAIWKALELAHLNTFVSNLPA 589 (602)
Q Consensus 561 ~~~~~---~~----~~~i~~al~~~~l~~~~~~~~~ 589 (602)
..... .+ ++++.++++.++|.++.++.|.
T Consensus 105 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~ 140 (372)
T 1v43_A 105 AFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPA 140 (372)
T ss_dssp HTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTT
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChh
Confidence 64321 12 3468999999999887776654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-21 Score=201.07 Aligned_cols=168 Identities=17% Similarity=0.130 Sum_probs=111.1
Q ss_pred EEEeeeEEEEecCCc--------------------eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH
Q psy3001 199 VEFKDYKVRYREGLE--------------------LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL 258 (602)
Q Consensus 199 i~~~~vs~~~~~~~e--------------------~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~ 258 (602)
..++++++++.+| + ++||+|+||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 37 ~~l~~is~~i~~G-e~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 37 EILNLIELRMRAG-NIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHhhhccceecCC-CCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 4688899988887 7 89999999999999999999999999999999997653
Q ss_pred hhccceecccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccC
Q psy3001 259 RSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRS 338 (602)
Q Consensus 259 ~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 338 (602)
+ .++++|++.. +.+. +..+-.+.. ... ...+.++. ....
T Consensus 109 ~--~~~v~q~~~~--------~~lt----------------v~D~~g~~~-----~~~-------~~~~~L~~---~~L~ 147 (413)
T 1tq4_A 109 M--ERHPYKHPNI--------PNVV----------------FWDLPGIGS-----TNF-------PPDTYLEK---MKFY 147 (413)
T ss_dssp C--CCEEEECSSC--------TTEE----------------EEECCCGGG-----SSC-------CHHHHHHH---TTGG
T ss_pred e--eEEecccccc--------CCee----------------ehHhhcccc-----hHH-------HHHHHHHH---cCCC
Confidence 1 2678875210 1110 000000000 000 11112222 1111
Q ss_pred CcccccCCcCCCChhhHHHHHHHHHHhh----------CCCeEEEecccccCChhHHHHHHHHHHHhc------c----c
Q psy3001 339 PIYSHFGETVTGNVGQRQLICLARALLR----------KTKILILDEATAAIDLETDDLIQSTIRSEF------A----H 398 (602)
Q Consensus 339 ~~~~~~~~~lsgs~Gq~Qrl~lAral~~----------~p~iliLDEpts~LD~~~~~~i~~~l~~~~------~----~ 398 (602)
.. ..... +|+..||+||++|||||.+ +|++++|||||++||+.++..+.+.+++.. . .
T Consensus 148 ~~-~~~~~-lS~G~~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~ 225 (413)
T 1tq4_A 148 EY-DFFII-ISATRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEP 225 (413)
T ss_dssp GC-SEEEE-EESSCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSC
T ss_pred cc-CCeEE-eCCCCccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 11 11112 5641139999999999999 999999999999999999998888887752 1 2
Q ss_pred cEEEEeeecccc--ccc-CCeE
Q psy3001 399 CTVLTIAHRLNT--IID-SDRV 417 (602)
Q Consensus 399 ~tvi~itH~l~~--i~~-~d~i 417 (602)
.++++.||.++. +.. ||++
T Consensus 226 ~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 226 PIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp CEEECCTTCTTSTTHHHHHHHH
T ss_pred cEEEEecCcCCccCHHHHHHHH
Confidence 568889999886 555 6655
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-19 Score=184.35 Aligned_cols=107 Identities=20% Similarity=0.347 Sum_probs=90.7
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+||||++.+|.. ||++|+
T Consensus 31 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~eni 108 (355)
T 1z47_A 31 VRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVGLVFQNYALFQHMTVYDNV 108 (355)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEEEECGGGCCCTTSCHHHHH
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEEEEecCcccCCCCCHHHHH
Confidence 457999999999999999999999999999999999999999999999977554 36789999999999976 999998
Q ss_pred CCC---CCC----cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV---GES----SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... ... .++++.++++.++|.++.++.|..
T Consensus 109 ~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~ 145 (355)
T 1z47_A 109 SFGLREKRVPKDEMDARVRELLRFMRLESYANRFPHE 145 (355)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCccc
Confidence 531 111 245689999999999887766653
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.77 E-value=2.3e-19 Score=184.71 Aligned_cols=107 Identities=20% Similarity=0.355 Sum_probs=91.2
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++. +++|+||||++.+|.. ||++|+
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~eni 96 (362)
T 2it1_A 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGLVFQNWALYPHMTVYKNI 96 (362)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEEECTTCCCCTTSCHHHHH
T ss_pred EEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEEEecCcccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999999999999877654 4689999999999976 999998
Q ss_pred CCC----CCC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPV----GES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~----~~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
... ... .++++.++++.++|.++.++.|..
T Consensus 97 ~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 133 (362)
T 2it1_A 97 AFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQ 133 (362)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGG
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhh
Confidence 531 111 235689999999999887766653
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-19 Score=178.82 Aligned_cols=109 Identities=26% Similarity=0.327 Sum_probs=89.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC----------CCh---hhhhccceEecCC
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT----------LGL---HTLRSRLTIIPQD 548 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~----------~~~---~~lr~~i~~V~Qd 548 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.. .+. ..+|++++||||+
T Consensus 22 l~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~Q~ 101 (262)
T 1b0u_A 22 LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQH 101 (262)
T ss_dssp EEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECSS
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccChhhHHHHhcceEEEecC
Confidence 457999999999999999999999999999999999999999999999862 333 3457789999999
Q ss_pred cccccc-chhcccCCC----CCC----cHHHHHHHHHHcCCCcc-ccccccC
Q psy3001 549 PVLFSG-TLRLNLDPV----GES----SDEAIWKALELAHLNTF-VSNLPAR 590 (602)
Q Consensus 549 p~lf~~-Tv~~nl~~~----~~~----~~~~i~~al~~~~l~~~-~~~~~~~ 590 (602)
+.+|.. ||++|+... ... .++++.++++.++|.++ .++.|..
T Consensus 102 ~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~ 153 (262)
T 1b0u_A 102 FNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVH 153 (262)
T ss_dssp CCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGG
T ss_pred cccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCccc
Confidence 998876 999998531 111 13568899999999887 6665543
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.8e-19 Score=183.26 Aligned_cols=108 Identities=20% Similarity=0.291 Sum_probs=92.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...++ .+++|+||||++.+|.. ||++|
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v~Q~~~l~~~ltv~en 92 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFVYQNYSLFPHMNVKKN 92 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEEecCcccCCCCCHHHH
Confidence 4557999999999999999999999999999999999999999999999977554 36789999999999987 99999
Q ss_pred cCCC----CCCcHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPV----GESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~----~~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+... ....++++.++++.++|.++.++.|..
T Consensus 93 l~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 127 (348)
T 3d31_A 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLT 127 (348)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGG
T ss_pred HHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhh
Confidence 8531 112237899999999999887766653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.3e-19 Score=184.61 Aligned_cols=110 Identities=16% Similarity=0.276 Sum_probs=90.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC---hhhhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~---~~~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ....+++|+||||++.+|.. ||
T Consensus 20 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~ltv 99 (353)
T 1oxx_K 20 ALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTA 99 (353)
T ss_dssp EEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSCH
T ss_pred eEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhhCCEEEEeCCCccCCCCCH
Confidence 345799999999999999999999999999999999999999999999986521 22346789999999999986 99
Q ss_pred hcccCCCC---CCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDPVG---ESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+.... ..+ ++++.++++.++|.++.++.|..
T Consensus 100 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~ 140 (353)
T 1oxx_K 100 FENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRE 140 (353)
T ss_dssp HHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGG
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhh
Confidence 99985321 112 35689999999999887766653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=3.8e-19 Score=178.30 Aligned_cols=108 Identities=22% Similarity=0.373 Sum_probs=91.3
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+.++||++++||++||+|+||||||||+++|+|+++|++|+|.++| +++||||+|.+|..||++|+
T Consensus 53 vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl 119 (290)
T 2bbs_A 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI 119 (290)
T ss_dssp SEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHh
Confidence 45679999999999999999999999999999999999999999998 59999999999999999999
Q ss_pred CCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
. .....+..+.++++.+++.++++++|.++++.+++.+.+|
T Consensus 120 ~-~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~L 160 (290)
T 2bbs_A 120 I-GVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITL 160 (290)
T ss_dssp H-TTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCC
T ss_pred h-CcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcC
Confidence 7 3233455577788889999988899988888877776654
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1e-18 Score=180.95 Aligned_cols=107 Identities=19% Similarity=0.245 Sum_probs=89.6
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC------CChhhhhccceEecCCcccccc-
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT------LGLHTLRSRLTIIPQDPVLFSG- 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~------~~~~~lr~~i~~V~Qdp~lf~~- 554 (602)
+.++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .++. +++|+||||++.+|..
T Consensus 19 l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~--~r~ig~v~Q~~~l~~~l 96 (372)
T 1g29_1 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK--DRDIAMVFQSYALYPHM 96 (372)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG--GSSEEEECSCCCCCTTS
T ss_pred EeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh--HCCEEEEeCCCccCCCC
Confidence 457999999999999999999999999999999999999999999999865 4433 5689999999999975
Q ss_pred chhcccCCC----CCC---cHHHHHHHHHHcCCCccccccccC
Q psy3001 555 TLRLNLDPV----GES---SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 555 Tv~~nl~~~----~~~---~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
||++|+... ... .++++.++++.++|.++.++.|..
T Consensus 97 tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~ 139 (372)
T 1g29_1 97 TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139 (372)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG
T ss_pred CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCccc
Confidence 999998531 111 235689999999998887766653
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-17 Score=171.25 Aligned_cols=79 Identities=18% Similarity=0.192 Sum_probs=72.4
Q ss_pred ChhhHHHHHHHHHHh---------hCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLICLARALL---------RKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl~lAral~---------~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+|||||++||++|+ .+|+||+|||||++||+.....+.+.+.... .|+|++|| ++. .||++++++
T Consensus 267 S~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~l~ 341 (359)
T 2o5v_A 267 SRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLRAQ 341 (359)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEEEE
Confidence 579999999999999 8999999999999999999999999998764 79999999 444 799999999
Q ss_pred CceEEeecChhHH
Q psy3001 422 KGLVVEFDSPSVL 434 (602)
Q Consensus 422 ~G~i~~~g~~~~l 434 (602)
+|+++..|+++++
T Consensus 342 ~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 342 AGRFTPVADEEMQ 354 (359)
T ss_dssp TTEEEECCCTTTS
T ss_pred CCEEEecCCHHHH
Confidence 9999999988765
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=9.7e-19 Score=176.61 Aligned_cols=171 Identities=12% Similarity=0.151 Sum_probs=105.8
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceecccch-hhhhhc
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQVLA-TIFVIC 276 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~~~-~~~~~~ 276 (602)
++|+..++ ++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ +..+++++|++. ...
T Consensus 93 l~~~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~--- 168 (302)
T 3b9q_A 93 LQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--- 168 (302)
T ss_dssp CCCCSSSC-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCH---
T ss_pred cccccCCC-cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCH---
Confidence 34444455 9999999999999999999999999999999999988765431 223 457999998632 100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH--HHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK--RLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+.+ ++... . ....+ .++..++.+........+|
T Consensus 169 ----~----------------------~~v~e--------~l~~~--~-~~~~d~~lldt~gl~~~~~~~~~eLS----- 206 (302)
T 3b9q_A 169 ----A----------------------TVLSK--------AVKRG--K-EEGYDVVLCDTSGRLHTNYSLMEELI----- 206 (302)
T ss_dssp ----H----------------------HHHHH--------HHHHH--H-HTTCSEEEECCCCCSSCCHHHHHHHH-----
T ss_pred ----H----------------------HHHHH--------HHHHH--H-HcCCcchHHhcCCCCcchhHHHHHHH-----
Confidence 0 00000 00000 0 00000 0001111111111111122
Q ss_pred HHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhccccEEEEeee---------ccccccc-CCeEEEEeC
Q psy3001 355 RQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAH---------RLNTIID-SDRVLVLDK 422 (602)
Q Consensus 355 ~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH---------~l~~i~~-~d~i~~l~~ 422 (602)
|||++||||+..+|+ +|+|| ||+++|+.+.. ..+.+ ..+.|+|++|| .++.+.. .+.|.++..
T Consensus 207 kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~ 281 (302)
T 3b9q_A 207 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 281 (302)
T ss_dssp HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeC
Confidence 899999999999999 99999 99999997642 11211 23789999999 2333333 578899988
Q ss_pred ceE
Q psy3001 423 GLV 425 (602)
Q Consensus 423 G~i 425 (602)
|+.
T Consensus 282 Ge~ 284 (302)
T 3b9q_A 282 GEA 284 (302)
T ss_dssp SSS
T ss_pred CCC
Confidence 865
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.1e-18 Score=170.54 Aligned_cols=104 Identities=20% Similarity=0.318 Sum_probs=88.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccce-EecCCccccccchhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQDPVLFSGTLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Qdp~lf~~Tv~~n 559 (602)
.+.++||+++ ||++||+||||||||||+++|+|++ |++|+|.++|+++... .. |++++ ||||+|.+ ..||++|
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i~~~v~Q~~~l-~~tv~en 93 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRYSTNLPEAYEI-GVTVNDI 93 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTEEECCGGGSCT-TSBHHHH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhheEEEeCCCCcc-CCcHHHH
Confidence 3557999999 9999999999999999999999999 9999999999998754 33 77899 99999988 8899999
Q ss_pred cCCC---CCCcHHHHHHHHHHcCCC-ccccccccC
Q psy3001 560 LDPV---GESSDEAIWKALELAHLN-TFVSNLPAR 590 (602)
Q Consensus 560 l~~~---~~~~~~~i~~al~~~~l~-~~~~~~~~~ 590 (602)
+... ....++++.++++.+++. ++.++.|..
T Consensus 94 l~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 128 (263)
T 2pjz_A 94 VYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYK 128 (263)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGG
T ss_pred HHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhh
Confidence 8532 134577899999999998 776666543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=1.6e-18 Score=170.63 Aligned_cols=108 Identities=30% Similarity=0.296 Sum_probs=87.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhc--cCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chh
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLR 557 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~ 557 (602)
+.++||++++||++||+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +..++||||+|.+|.+ ||+
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~tv~ 98 (250)
T 2d2e_A 19 LKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKGLFLAFQYPVEVPGVTIA 98 (250)
T ss_dssp EEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSCBHH
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCcEEEeccCCccccCCCHH
Confidence 4579999999999999999999999999999998 88999999999999988776554 4569999999999876 999
Q ss_pred cccCCC-----C--CC---cHHHHHHHHHHcCCC-cccccccc
Q psy3001 558 LNLDPV-----G--ES---SDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 558 ~nl~~~-----~--~~---~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
+|+... . .. ..+++.++++.+++. ++.++.|.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 141 (250)
T 2d2e_A 99 NFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLN 141 (250)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTT
T ss_pred HHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcc
Confidence 987421 1 11 135688999999994 66655543
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.72 E-value=7e-17 Score=166.56 Aligned_cols=74 Identities=20% Similarity=0.266 Sum_probs=64.0
Q ss_pred CcCCCChhhHH------HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeEE
Q psy3001 346 ETVTGNVGQRQ------LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRVL 418 (602)
Q Consensus 346 ~~lsgs~Gq~Q------rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i~ 418 (602)
..+| ||||| |+++||||+.+|++|||||||++||+.....+.+.++.+. .+.|+|+|||+.+....||+++
T Consensus 247 ~~lS--~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 247 TFLS--GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp GGSC--HHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred HHCC--HHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 3456 69999 6788888999999999999999999999999999998864 4689999999976555599999
Q ss_pred EEe
Q psy3001 419 VLD 421 (602)
Q Consensus 419 ~l~ 421 (602)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=4.7e-19 Score=176.21 Aligned_cols=150 Identities=11% Similarity=0.129 Sum_probs=80.9
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++... +.+..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~-------~~ltv--------- 64 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVK-------MKLTV--------- 64 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----C-------CEEEE---------
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCc-------CCceE---------
Confidence 389999999999999999999999999999999987743 23457899999974321 00000
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEE
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliL 373 (602)
..+..+....... .....+..+.. .... ......+| +|||||+++|||++. +++|
T Consensus 65 ---~d~~~~g~~~~~~---~~~~~i~~~~~--~~~~------------~~~~~~LS--~G~~qrv~iaRal~~---llll 119 (270)
T 3sop_A 65 ---IDTPGFGDQINNE---NCWEPIEKYIN--EQYE------------KFLKEEVN--IARKKRIPDTRVHCC---LYFI 119 (270)
T ss_dssp ---ECCCC--CCSBCT---TCSHHHHHHHH--HHHH------------HHHHHHSC--TTCCSSCCCCSCCEE---EEEE
T ss_pred ---EechhhhhhcccH---HHHHHHHHHHH--HHHH------------hhhHHhcC--cccchhhhhheeeee---eEEE
Confidence 0000000000000 00001111111 0011 11123456 699999999999886 9999
Q ss_pred ecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 374 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
|||+++||+...+ +.+.+. +..++|+|.|+.+.+
T Consensus 120 dep~~gL~~lD~~-~l~~L~---~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 120 SPTGHSLRPLDLE-FMKHLS---KVVNIIPVIAKADTM 153 (270)
T ss_dssp CCCSSSCCHHHHH-HHHHHH---TTSEEEEEETTGGGS
T ss_pred ecCCCcCCHHHHH-HHHHHH---hcCcEEEEEeccccC
Confidence 9999999997733 333333 337999999887665
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.71 E-value=6.6e-19 Score=186.62 Aligned_cols=180 Identities=13% Similarity=0.085 Sum_probs=124.4
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCe---ecCCC-----ChHHHhhccceecccchh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTL-----GLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~---~~~~~-----~~~~~~~~i~~v~Q~~~~ 271 (602)
.++++ |.+.+| ++++|+|+||||||||+++|+|+.+|+.|.|.++|. ++.++ ....+++.+++++|....
T Consensus 147 vld~v-l~i~~G-q~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~ 224 (438)
T 2dpy_A 147 AINAL-LTVGRG-QRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVS 224 (438)
T ss_dssp HHHHH-SCCBTT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSC
T ss_pred EEeee-EEecCC-CEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCC
Confidence 46666 666666 999999999999999999999999999999999998 45432 134577889999984111
Q ss_pred hhhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCC
Q psy3001 272 IFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN 351 (602)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs 351 (602)
.+ . ...+..+ .....+.... .......++ +....+|
T Consensus 225 ~~---------~-------------------~~~v~~~------------~~~~ae~~~~-~~~~v~~~l-d~l~~lS-- 260 (438)
T 2dpy_A 225 PL---------L-------------------RMQGAAY------------ATRIAEDFRD-RGQHVLLIM-DSLTRYA-- 260 (438)
T ss_dssp HH---------H-------------------HHHHHHH------------HHHHHHHHHT-TTCEEEEEE-ECHHHHH--
T ss_pred HH---------H-------------------HHHHHHH------------HHHHHHHHHh-CCCCHHHHH-HhHHHHH--
Confidence 00 0 0000000 0000000000 000000001 1123344
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc-----cc-----EEEEeeecccccccCCeEEEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-----HC-----TVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-----~~-----tvi~itH~l~~i~~~d~i~~l~ 421 (602)
+|| ||++|| +.+|++ |++||+.+...+.+.+.+..+ |. ||+++|||++ ...||+++++.
T Consensus 261 ~g~-qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~ 329 (438)
T 2dpy_A 261 MAQ-REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAIL 329 (438)
T ss_dssp HHH-HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHS
T ss_pred HHH-HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEe
Confidence 699 999999 889988 999999999999999988643 53 9999999999 44499999999
Q ss_pred CceEEeecChhHHhh
Q psy3001 422 KGLVVEFDSPSVLMK 436 (602)
Q Consensus 422 ~G~i~~~g~~~~l~~ 436 (602)
+|+++..+++.++..
T Consensus 330 dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 330 DGHIVLSRRLAEAGH 344 (438)
T ss_dssp SEEEEECHHHHHTTC
T ss_pred CcEEEEeCCHHHccC
Confidence 999999998877654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.70 E-value=8.8e-18 Score=172.67 Aligned_cols=171 Identities=12% Similarity=0.147 Sum_probs=106.1
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceecccch-hhhhhc
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQVLA-TIFVIC 276 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~~~-~~~~~~ 276 (602)
++|+..++ ++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ +..+++++|++. ...
T Consensus 150 l~l~~~~g-~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p--- 225 (359)
T 2og2_A 150 LQLGFRKP-AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKA--- 225 (359)
T ss_dssp CCCCSSSS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCH---
T ss_pred cceecCCC-eEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccCh---
Confidence 34444455 9999999999999999999999999999999999988765321 222 457999998632 100
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHH--HHhhcccCCcccccCCcCCCChhh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK--RLESVSRSPIYSHFGETVTGNVGQ 354 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~lsgs~Gq 354 (602)
. ..+.+ ++... . ....+ .++..++.+........+|
T Consensus 226 ----~----------------------~tv~e--------~l~~~--~-~~~~d~~lldt~Gl~~~~~~~~~eLS----- 263 (359)
T 2og2_A 226 ----A----------------------TVLSK--------AVKRG--K-EEGYDVVLCDTSGRLHTNYSLMEELI----- 263 (359)
T ss_dssp ----H----------------------HHHHH--------HHHHH--H-HTTCSEEEEECCCCSSCCHHHHHHHH-----
T ss_pred ----h----------------------hhHHH--------HHHHH--H-hCCCHHHHHHhcCCChhhhhHHHHHH-----
Confidence 0 00000 00000 0 00000 0001111111111111122
Q ss_pred HHHHHHHHHHhhCCC--eEEEecccccCChhHHHHHHHHHHHhccccEEEEeeec---------cccccc-CCeEEEEeC
Q psy3001 355 RQLICLARALLRKTK--ILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR---------LNTIID-SDRVLVLDK 422 (602)
Q Consensus 355 ~Qrl~lAral~~~p~--iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~---------l~~i~~-~d~i~~l~~ 422 (602)
|||++||||+..+|+ +|+|| ||+++|+.+... .+.+ ..+.|+|++||- ++.+.. .+.|.++..
T Consensus 264 kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~ 338 (359)
T 2og2_A 264 ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGV 338 (359)
T ss_dssp HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEEC
T ss_pred HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeC
Confidence 899999999999999 99999 999999976531 1211 237899999992 333333 578888888
Q ss_pred ceE
Q psy3001 423 GLV 425 (602)
Q Consensus 423 G~i 425 (602)
|+.
T Consensus 339 Ge~ 341 (359)
T 2og2_A 339 GEA 341 (359)
T ss_dssp SSS
T ss_pred CCC
Confidence 864
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.69 E-value=7.8e-18 Score=167.26 Aligned_cols=108 Identities=20% Similarity=0.244 Sum_probs=85.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhc--cCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--IEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv 556 (602)
.+.++||++++||++||+||||||||||+|+|+|+ ++|++|+|.++|+++...+.... +++++||||+|.+|.+ ||
T Consensus 35 vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~~tv 114 (267)
T 2zu0_C 35 ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPGVSN 114 (267)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTTCBH
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCCEEEEccCccccccccH
Confidence 34579999999999999999999999999999999 57899999999999987776554 4469999999998876 78
Q ss_pred hcccCCC----------CCCc----HHHHHHHHHHcCCC-ccccccc
Q psy3001 557 RLNLDPV----------GESS----DEAIWKALELAHLN-TFVSNLP 588 (602)
Q Consensus 557 ~~nl~~~----------~~~~----~~~i~~al~~~~l~-~~~~~~~ 588 (602)
++|+... ...+ ++++.++++.+++. ++.++.|
T Consensus 115 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~ 161 (267)
T 2zu0_C 115 QFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSV 161 (267)
T ss_dssp HHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBT
T ss_pred HHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCc
Confidence 8776320 1111 24588999999996 4544443
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-18 Score=167.00 Aligned_cols=176 Identities=10% Similarity=-0.039 Sum_probs=98.5
Q ss_pred EEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-HHHhhccceecccchhhhhhccCCceeEee
Q psy3001 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQVLATIFVICYSTPVFIFV 285 (602)
Q Consensus 207 ~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~ 285 (602)
++.+| ++++|+||||||||||+++|+|+++. |.+++. +....+ ...++.++|++|++..+........+....
T Consensus 16 ~i~~G-ei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~-~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~ 89 (207)
T 1znw_A 16 PAAVG-RVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVS-ATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWA 89 (207)
T ss_dssp ---CC-CEEEEECSTTSSHHHHHHHHHHHSTT----CEECCC-EESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred CCCCC-CEEEEECCCCCCHHHHHHHHHhhCCc----eEEccc-ccccCCcccccCCCeeEecCHHHHHHHHhcCCceeeh
Confidence 55666 99999999999999999999999963 444432 111111 123567999999865422111111111100
Q ss_pred ecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHH---
Q psy3001 286 IVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLAR--- 362 (602)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAr--- 362 (602)
. ..... . . ........ .+..+....+ .. ..... |.+.++-..++
T Consensus 90 ~---------------~~~n~--~-~--~g~~~~~~----~~~~~~~~~~-----~~--~l~~~--gl~~~~~~~~~~lS 136 (207)
T 1znw_A 90 E---------------IHGGL--H-R--SGTLAQPV----RAAAATGVPV-----LI--EVDLA--GARAIKKTMPEAVT 136 (207)
T ss_dssp E---------------EGGGT--E-E--EEEEHHHH----HHHHHHTCCE-----EE--ECCHH--HHHHHHHHCTTSEE
T ss_pred h---------------hcCch--h-h--cCCcHHHH----HHHHHcCCeE-----EE--EeCHH--HHHHHHHhcCCcEE
Confidence 0 00000 0 0 00000000 0001100000 00 00001 23333333333
Q ss_pred HHhhCCCeEEEecccccC----ChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEe
Q psy3001 363 ALLRKTKILILDEATAAI----DLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLD 421 (602)
Q Consensus 363 al~~~p~iliLDEpts~L----D~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~ 421 (602)
||+.+|++++|||||+++ |+.....+.+.++++. .+.|+|+|||+++++.. ||+|++|.
T Consensus 137 ~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 788999999999999998 6678888888888764 37899999999999987 99998884
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.4e-17 Score=163.89 Aligned_cols=96 Identities=17% Similarity=0.157 Sum_probs=80.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl 560 (602)
+.++||++++||++||+||||||||||+++|+|+++|++|+|. ++++++||||+|.+| ..||++|+
T Consensus 21 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~v~q~~~~~~~~tv~enl 87 (253)
T 2nq2_C 21 FQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGFVPQFFSSPFAYSVLDIV 87 (253)
T ss_dssp EEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEEECSCCCCSSCCBHHHHH
T ss_pred EEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEEEcCCCccCCCCCHHHHH
Confidence 4579999999999999999999999999999999999999998 256799999999887 56999998
Q ss_pred CCCC---------CC--cHHHHHHHHHHcCCCccccccccC
Q psy3001 561 DPVG---------ES--SDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~~~~---------~~--~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
.... .. .++++.++++.+++.++.++.|..
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 128 (253)
T 2nq2_C 88 LMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTS 128 (253)
T ss_dssp HGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred HHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhh
Confidence 5321 11 235689999999999877765543
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.5e-18 Score=169.05 Aligned_cols=130 Identities=21% Similarity=0.201 Sum_probs=92.0
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.+++++ ..+| ++++|+||||||||||+++|+|+++|+ +|+|.++|.++. +++|...
T Consensus 16 vl~~i~--i~~g-~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~------------~~~~~~~-------- 72 (261)
T 2eyu_A 16 KVLELC--HRKM-GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE------------YVFKHKK-------- 72 (261)
T ss_dssp HHHHGG--GCSS-EEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCC------------SCCCCSS--------
T ss_pred HHHHHh--hCCC-CEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcce------------eecCCcc--------
Confidence 466776 5555 999999999999999999999999998 999999887642 2333210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
.+.. + . .++.. ...-|+
T Consensus 73 -~~v~-------------q----------------~-------------------~~gl~--------------~~~l~~ 89 (261)
T 2eyu_A 73 -SIVN-------------Q----------------R-------------------EVGED--------------TKSFAD 89 (261)
T ss_dssp -SEEE-------------E----------------E-------------------EBTTT--------------BSCHHH
T ss_pred -eeee-------------H----------------H-------------------HhCCC--------------HHHHHH
Confidence 0000 0 0 00000 012279
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
+|||||..+|+++++|||| |+++...+ ++....+.+|++++|+.+....|||+++|.
T Consensus 90 ~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 90 ALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 9999999999999999999 88876544 333445889999999988544478776654
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.5e-17 Score=176.69 Aligned_cols=78 Identities=13% Similarity=0.063 Sum_probs=68.3
Q ss_pred cCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChh-----HHHHHHHHHHHhc-cccEEEEeeecc---------
Q psy3001 344 FGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLE-----TDDLIQSTIRSEF-AHCTVLTIAHRL--------- 408 (602)
Q Consensus 344 ~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~-----~~~~i~~~l~~~~-~~~tvi~itH~l--------- 408 (602)
....+| +||+||+++|+++..+|++||+| ||++||.. ....+.+.++.++ .++|+|+++|+.
T Consensus 350 ~p~~LS--~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~ 426 (525)
T 1tf7_A 350 YPESAG--LEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSIT 426 (525)
T ss_dssp CGGGSC--HHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSC
T ss_pred ccccCC--HHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHhCCCEEEEEECcccccCccccc
Confidence 344566 69999999999999999999999 99999998 8888888887764 479999999999
Q ss_pred -ccccc-CCeEEEEeCce
Q psy3001 409 -NTIID-SDRVLVLDKGL 424 (602)
Q Consensus 409 -~~i~~-~d~i~~l~~G~ 424 (602)
..+.. ||+|++|++|+
T Consensus 427 ~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 427 DSHISTITDTIILLQYVE 444 (525)
T ss_dssp SSCCTTTCSEEEEEEEEE
T ss_pred CcccceeeeEEEEEEEEE
Confidence 67776 99999999887
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=5.3e-17 Score=164.44 Aligned_cols=179 Identities=13% Similarity=0.141 Sum_probs=108.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCc-eEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.++++++.+.+| ++++|+|+||||||||++.|+|.+.|.+| .|.+.+.+ .+...+++++..+.+.....
T Consensus 24 ~Ld~i~~~l~~G-~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~~------ 93 (296)
T 1cr0_A 24 GINDKTLGARGG-EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRLR------ 93 (296)
T ss_dssp THHHHHCSBCTT-CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCGG------
T ss_pred HHHHHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCChh------
Confidence 588899888888 99999999999999999999999999988 77654332 34555555544433321000
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc-ccccCCcCCCChhh-HH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI-YSHFGETVTGNVGQ-RQ 356 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~lsgs~Gq-~Q 356 (602)
..+.+.. ..+. .....+..+.+ +...++ +.......+ .+| +|
T Consensus 94 -----------------------~~~~l~~-------~~~~--~~~~~~~~~~~--l~~~~l~i~~~~~~~~--~~~l~~ 137 (296)
T 1cr0_A 94 -----------------------QSDSLKR-------EIIE--NGKFDQWFDEL--FGNDTFHLYDSFAEAE--TDRLLA 137 (296)
T ss_dssp -----------------------GCHHHHH-------HHHH--HTHHHHHHHHH--HSSSCEEEECCCCSCC--HHHHHH
T ss_pred -----------------------hcccccc-------CCCC--HHHHHHHHHHH--hccCCEEEECCCCCCC--HHHHHH
Confidence 0000000 0000 00000111111 000111 111112233 577 77
Q ss_pred HHHHHHHHhhCCCeEEEecccc---c---CCh-hHHHHHHHHHHHhc--cccEEEEeeecc--c----------------
Q psy3001 357 LICLARALLRKTKILILDEATA---A---IDL-ETDDLIQSTIRSEF--AHCTVLTIAHRL--N---------------- 409 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts---~---LD~-~~~~~i~~~l~~~~--~~~tvi~itH~l--~---------------- 409 (602)
|+. |+++..+|+++|+||||+ + +|. .....+.+.|+.+. .++|||+++|.. +
T Consensus 138 ~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl 216 (296)
T 1cr0_A 138 KLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDL 216 (296)
T ss_dssp HHH-HHHHTTCCSEEEEEEEC-----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CC
T ss_pred HHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHh
Confidence 777 999999999999999999 4 344 45567777787764 279999999995 4
Q ss_pred ----cccc-CCeEEEEeCceE
Q psy3001 410 ----TIID-SDRVLVLDKGLV 425 (602)
Q Consensus 410 ----~i~~-~d~i~~l~~G~i 425 (602)
.+.. ||+|++|++|+.
T Consensus 217 ~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 217 RGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp C---CHHHHCSEEEEEEEC--
T ss_pred cccHHhHhhCcEEEEEecCcc
Confidence 5666 999999998874
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-18 Score=164.05 Aligned_cols=158 Identities=13% Similarity=0.123 Sum_probs=106.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
++++|+|+||||||||+++|+|+++ ++| |.++|.++..+. .+++.+++++|+... ..-..
T Consensus 2 ~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~~g--------~~~~l-------- 61 (189)
T 2i3b_A 2 RHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTLSG--------TRGPL-------- 61 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEETTS--------CEEEE--------
T ss_pred CEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEeccc--------ceehh--------
Confidence 7899999999999999999999999 999 999998875443 467889999886210 00000
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH-HHHH---HHhhCC
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI-CLAR---ALLRKT 368 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl-~lAr---al~~~p 368 (602)
. .+. .... .....+..+..+..+| +|||+++ ++++ |+..+|
T Consensus 62 ----~-------~~~------~~~~----------------~~~~~~~v~~~~~~ls--~~er~~~~~l~~~a~A~~~~~ 106 (189)
T 2i3b_A 62 ----S-------RVG------LEPP----------------PGKRECRVGQYVVDLT--SFEQLALPVLRNADCSSGPGQ 106 (189)
T ss_dssp ----E-------ECC------CCCC----------------SSSCCEESSSSEECHH--HHHTTTTTTTCCCCCCCSSCC
T ss_pred ----h-------ccc------ccCC----------------ccccccccceEEEcch--HHHHHHHHHHhhhhHhhccCC
Confidence 0 000 0000 0000011333344445 5899888 4555 689999
Q ss_pred CeEEEec--ccccCChhHHHHHHHHHHHhccccEEE----EeeecccccccCCeEEEEeCceEEeec
Q psy3001 369 KILILDE--ATAAIDLETDDLIQSTIRSEFAHCTVL----TIAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 369 ~iliLDE--pts~LD~~~~~~i~~~l~~~~~~~tvi----~itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
++||||| |+..+|+...+.+.+.++. ..++| .|+||.+ ..-+|+|..+++|++++..
T Consensus 107 dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 107 RVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred CEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 9999999 8988999887777777753 23444 4459986 3347888888888987654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.1e-16 Score=139.37 Aligned_cols=79 Identities=23% Similarity=0.262 Sum_probs=67.3
Q ss_pred CCcCCCChhhHHHHHHH------HHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeecccccccCCeE
Q psy3001 345 GETVTGNVGQRQLICLA------RALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIIDSDRV 417 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lA------ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~~d~i 417 (602)
...+| ||||||++|| |||+.+|++++|||||++||+.+...+.+.+++.. +++|+|++||+++....||++
T Consensus 55 ~~~LS--gGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~d~i 132 (148)
T 1f2t_B 55 LTFLS--GGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHV 132 (148)
T ss_dssp GGGSC--HHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEE
T ss_pred hhHCC--HHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHHHHHhCCEE
Confidence 44566 6999999876 99999999999999999999999999999998864 478999999999544449999
Q ss_pred EEE--eCceE
Q psy3001 418 LVL--DKGLV 425 (602)
Q Consensus 418 ~~l--~~G~i 425 (602)
++| ++|..
T Consensus 133 i~l~~~~g~s 142 (148)
T 1f2t_B 133 IRISLENGSS 142 (148)
T ss_dssp EEEEEETTEE
T ss_pred EEEEcCCCeE
Confidence 999 45543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=4.1e-16 Score=178.27 Aligned_cols=83 Identities=11% Similarity=0.033 Sum_probs=67.7
Q ss_pred hhhHHHHHHHHHH--hhCCCeEEEecccccCChhHHHHH-HHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEE
Q psy3001 352 VGQRQLICLARAL--LRKTKILILDEATAAIDLETDDLI-QSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVV 426 (602)
Q Consensus 352 ~Gq~Qrl~lAral--~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~ 426 (602)
++++++..+|+++ +.+|+++||||||+++|+.....+ +..++.+. .++|+|++||+.+....||++..+.+|++.
T Consensus 724 tf~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 724 TFMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEE
T ss_pred hhHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEE
Confidence 4777777777777 899999999999999999887776 55555553 379999999998776669999999999998
Q ss_pred eecChhHH
Q psy3001 427 EFDSPSVL 434 (602)
Q Consensus 427 ~~g~~~~l 434 (602)
..++.+++
T Consensus 804 ~~~~~~~l 811 (934)
T 3thx_A 804 ALTTEETL 811 (934)
T ss_dssp EEEETTEE
T ss_pred EEecCCcE
Confidence 77665544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-16 Score=164.31 Aligned_cols=183 Identities=14% Similarity=0.116 Sum_probs=114.7
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++++ |.+.+| ++++|+|+||||||||+++|+|+..|+.|.|.+.|.+ ..++++.++++++. .. ..
T Consensus 61 ald~l-l~i~~G-q~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~-----~~ev~~~i~~~~~~-~~------~~ 126 (347)
T 2obl_A 61 AIDGL-LTCGIG-QRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGER-----GREVNEFLALLPQS-TL------SK 126 (347)
T ss_dssp HHHHH-SCEETT-CEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCC-----HHHHHHHHTTSCHH-HH------TT
T ss_pred EEEee-eeecCC-CEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEeccc-----HHHHHHHHHhhhhh-hh------hc
Confidence 45566 666666 9999999999999999999999999999999998864 23333333331110 00 00
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCc--ccccCCcCCCChhhHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPI--YSHFGETVTGNVGQRQL 357 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~lsgs~Gq~Qr 357 (602)
...+.. +. +.+. ........... ...+.+...+ ..+ .-.....+| +|| ||
T Consensus 127 ~v~~~~-----------~~----~~~~--------~~r~~~~~~~~-~~ae~~~~~~-~~vl~~ld~~~~lS--~g~-r~ 178 (347)
T 2obl_A 127 CVLVVT-----------TS----DRPA--------LERMKAAFTAT-TIAEYFRDQG-KNVLLMMDSVTRYA--RAA-RD 178 (347)
T ss_dssp EEEEEE-----------CT----TSCH--------HHHHHHHHHHH-HHHHHHHTTT-CEEEEEEETHHHHH--HHH-HH
T ss_pred eEEEEE-----------CC----CCCH--------HHHHHHHHHHH-HHHHHHHhcc-ccHHHHHhhHHHHH--HHH-HH
Confidence 000000 00 0000 00000000000 0001000100 000 001223445 699 89
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc---ccc-----EEEEeeeccccccc-CCeEEEEeCceEEee
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF---AHC-----TVLTIAHRLNTIID-SDRVLVLDKGLVVEF 428 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~-----tvi~itH~l~~i~~-~d~i~~l~~G~i~~~ 428 (602)
+++| +.+|++ |+++|+.....+.+.+++.. .|. ||+++||+++ .. ||+++++.+|+++..
T Consensus 179 v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~ 247 (347)
T 2obl_A 179 VGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLT 247 (347)
T ss_dssp HHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBC
T ss_pred HHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEe
Confidence 9999 688887 99999999999999998875 266 8999999999 44 999999999999998
Q ss_pred cChhHHh
Q psy3001 429 DSPSVLM 435 (602)
Q Consensus 429 g~~~~l~ 435 (602)
++..++.
T Consensus 248 ~~l~~~~ 254 (347)
T 2obl_A 248 RELAEEN 254 (347)
T ss_dssp HHHHTTT
T ss_pred CCHHHcC
Confidence 8877654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=9e-16 Score=177.69 Aligned_cols=73 Identities=14% Similarity=0.132 Sum_probs=61.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhH-HHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLET-DDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~-~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
++.+++++|++++.+|+++|||||++++|+.. ...++..++.+. . ++++|++||+++.+.. +|++.++ +|++.
T Consensus 854 ~em~~~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~ 930 (1022)
T 2o8b_B 854 VELSETASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMA 930 (1022)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEE
T ss_pred HHHHHHHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEE
Confidence 55666999999999999999999999999987 455667777664 3 7899999999999887 8998876 58876
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=3.3e-15 Score=145.06 Aligned_cols=70 Identities=19% Similarity=0.197 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHhh-------CCCeEEEecccccCChh-------HH-----HHHHHHHHHhc--cccEEEEeeeccc---
Q psy3001 354 QRQLICLARALLR-------KTKILILDEATAAIDLE-------TD-----DLIQSTIRSEF--AHCTVLTIAHRLN--- 409 (602)
Q Consensus 354 q~Qrl~lAral~~-------~p~iliLDEpts~LD~~-------~~-----~~i~~~l~~~~--~~~tvi~itH~l~--- 409 (602)
+++.+..+++++. +|+++++||||+.+|++ .+ ..+...+.+.. .++|||+++|...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g 184 (231)
T 4a74_A 105 QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGG 184 (231)
T ss_dssp HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC----
T ss_pred HHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcc
Confidence 3344455555554 89999999999999984 11 24555555542 3799999999544
Q ss_pred -cccc-CCeEEEEeCc
Q psy3001 410 -TIID-SDRVLVLDKG 423 (602)
Q Consensus 410 -~i~~-~d~i~~l~~G 423 (602)
.+.. ||+++++++|
T Consensus 185 ~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 185 HILAHSATLRVYLRKG 200 (231)
T ss_dssp -----CCSEEEEEEEC
T ss_pred hhhHhhceEEEEEEec
Confidence 4777 9999999875
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.6e-14 Score=140.27 Aligned_cols=156 Identities=11% Similarity=0.093 Sum_probs=101.2
Q ss_pred EecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhh---ccceecccchhhhhhccCCceeEe
Q psy3001 208 YREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS---RLTIIPQVLATIFVICYSTPVFIF 284 (602)
Q Consensus 208 ~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~---~i~~v~Q~~~~~~~~~~~~~~~~~ 284 (602)
+++| ++++|+|+||||||||++.+++...+.+|.+.+.+.+. ....+.+ .+++.+|...
T Consensus 20 i~~G-~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~-------------- 81 (235)
T 2w0m_A 20 IPQG-FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYI-------------- 81 (235)
T ss_dssp EETT-CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGB--------------
T ss_pred CcCC-CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHh--------------
Confidence 4455 99999999999999999999999888888888765433 2333322 3343333210
Q ss_pred eecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHH
Q psy3001 285 VIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364 (602)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral 364 (602)
...+. +.+ ..... .. .. .. ....+ .+|.++...+.+.
T Consensus 82 ------------~~~~~----~~~--------~~~~~-------~~--~~-----~~---~~~~~--~~~~~~~~~~~~~ 118 (235)
T 2w0m_A 82 ------------EKKLI----IID--------ALMKE-------KE--DQ-----WS---LVNLT--PEELVNKVIEAKQ 118 (235)
T ss_dssp ------------TTTEE----EEE--------CCC-------------CT-----TB---CSSCC--HHHHHHHHHHHHH
T ss_pred ------------hCCEE----EEe--------ccccc-------cC--ce-----ee---ecCCC--HHHHHHHHHHHHH
Confidence 00000 000 00000 00 00 00 01112 5888888777777
Q ss_pred hhCCC--eEEEecccccC--ChhHHHHHHHHHHHhc--cccEEEEeeecc--------ccccc-CCeEEEEeCce
Q psy3001 365 LRKTK--ILILDEATAAI--DLETDDLIQSTIRSEF--AHCTVLTIAHRL--------NTIID-SDRVLVLDKGL 424 (602)
Q Consensus 365 ~~~p~--iliLDEpts~L--D~~~~~~i~~~l~~~~--~~~tvi~itH~l--------~~i~~-~d~i~~l~~G~ 424 (602)
..+|+ ++++||||+.+ |+.....+.+.++++. .++|+|+++|.. ..+.. ||+|++|+...
T Consensus 119 ~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 119 KLGYGKARLVIDSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp HHCSSCEEEEEETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hhCCCceEEEEECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 78999 99999999988 9988888888887763 378999999999 45766 99999998653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=8e-16 Score=155.99 Aligned_cols=152 Identities=18% Similarity=0.148 Sum_probs=88.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
+++||+|+||||||||+++|+|+++|..|. +.+++++|+.. ++
T Consensus 91 ~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~-----------~~--------- 133 (312)
T 3aez_A 91 FIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGF-----------LY--------- 133 (312)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGG-----------BC---------
T ss_pred EEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCcc-----------CC---------
Confidence 899999999999999999999999998663 45789998732 11
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEE
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILI 372 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~ili 372 (602)
..+...+-........+.... .....+.++.+. ..........+| +||+||+++|||++.+|+|||
T Consensus 134 ----~~t~~e~~~~~~~~g~~~~~d----~~~~~~~L~~l~----~~~~~~~~~~lS--~G~~qRv~~a~al~~~p~ilI 199 (312)
T 3aez_A 134 ----PNAELQRRNLMHRKGFPESYN----RRALMRFVTSVK----SGSDYACAPVYS--HLHYDIIPGAEQVVRHPDILI 199 (312)
T ss_dssp ----CHHHHHHTTCTTCTTSGGGBC----HHHHHHHHHHHH----TTCSCEEEEEEE--TTTTEEEEEEEEEECSCSEEE
T ss_pred ----cccHHHHHHHHHhcCCChHHH----HHHHHHHHHHhC----CCcccCCcccCC--hhhhhhhhhHHHhccCCCEEE
Confidence 001110000000000000000 111222233222 111112234566 599999999999999999999
Q ss_pred EecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc--CCeEEEEeC
Q psy3001 373 LDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID--SDRVLVLDK 422 (602)
Q Consensus 373 LDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~--~d~i~~l~~ 422 (602)
||||++.+|+... .+.... ..+|+|+|+.+.... .+|.+.+++
T Consensus 200 lDep~~~~d~~~~-----~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 200 LEGLNVLQTGPTL-----MVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp EECTTTTCCCSSC-----CGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred ECCccccCCcchH-----HHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 9999999985221 111111 245777777655422 444443433
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=2.8e-15 Score=168.46 Aligned_cols=132 Identities=18% Similarity=0.185 Sum_probs=94.1
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC-CCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
...++|++++ | ++++|+||||||||||+|+++|+.. +..|.+.- . .+..+++++|.
T Consensus 566 ~~vl~disl~---g-~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp----a-------~~~~i~~v~~i-------- 622 (765)
T 1ewq_A 566 EFVPNDLEMA---H-ELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP----A-------EEAHLPLFDGI-------- 622 (765)
T ss_dssp CCCCEEEEES---S-CEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS----S-------SEEEECCCSEE--------
T ss_pred ceEeeeccCC---C-cEEEEECCCCCChHHHHHHHHhhhhhcccCceee----h-------hccceeeHHHh--------
Confidence 4578899998 4 9999999999999999999999874 66676420 0 12344554431
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. .. .+.+ + + ...+| +|++|
T Consensus 623 ------~~------------~~------~~~d--------~-----------l---------------~~g~S--~~~~e 642 (765)
T 1ewq_A 623 ------YT------------RI------GASD--------D-----------L---------------AGGKS--TFMVE 642 (765)
T ss_dssp ------EE------------EC------CC----------------------------------------CCS--HHHHH
T ss_pred ------hc------------cC------CHHH--------H-----------H---------------Hhccc--HHHHH
Confidence 00 00 0000 0 0 00123 59999
Q ss_pred HHHHHHHH--hhCCCeEEEecc---cccCChhHH-HHHHHHHHHhccccEEEEeeecccccccC
Q psy3001 357 LICLARAL--LRKTKILILDEA---TAAIDLETD-DLIQSTIRSEFAHCTVLTIAHRLNTIIDS 414 (602)
Q Consensus 357 rl~lAral--~~~p~iliLDEp---ts~LD~~~~-~~i~~~l~~~~~~~tvi~itH~l~~i~~~ 414 (602)
++.+|+++ +.+|+++||||| |+++|+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 643 ~~~la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 643 MEEVALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99999999 999999999999 999999875 467777766 578999999998775444
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.2e-14 Score=165.81 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=53.4
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHH-HHHHHhc--cccEEEEeeecccccccCCe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ-STIRSEF--AHCTVLTIAHRLNTIIDSDR 416 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~-~~l~~~~--~~~tvi~itH~l~~i~~~d~ 416 (602)
+|++|++.++++ +.+|+++||||||+++|+.....+. ..++.+. .++|+|++||+++....+|+
T Consensus 738 ~em~~~~~il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 738 EELTDTAEIIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp HHHHHHHHHHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHHHHHHHHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 699999999999 8999999999999999998887776 5565542 47999999999887654543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.51 E-value=9.1e-15 Score=147.53 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=48.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHH--hhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~--~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+|+++|++|+|.++|.|+..... ..+ +..+++++|+
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~ 164 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 164 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeC
Confidence 8999999999999999999999999999999999998865432 222 4568899986
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-14 Score=130.74 Aligned_cols=78 Identities=18% Similarity=0.294 Sum_probs=67.5
Q ss_pred CcCCCChhhHHHHHHHHHHhh----CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE-
Q psy3001 346 ETVTGNVGQRQLICLARALLR----KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL- 420 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~----~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l- 420 (602)
..+| ||||||++|||+|+. +|+++||||||++||+.+...+.+.+++..++.++|+|||+...+..||+++.+
T Consensus 63 ~~LS--gGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~ 140 (173)
T 3kta_B 63 EAMS--GGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 140 (173)
T ss_dssp GGCC--HHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEE
T ss_pred ccCC--HHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEE
Confidence 3456 699999999999974 469999999999999999999999999887778999999998887779999865
Q ss_pred -eCceE
Q psy3001 421 -DKGLV 425 (602)
Q Consensus 421 -~~G~i 425 (602)
++|..
T Consensus 141 ~~~g~s 146 (173)
T 3kta_B 141 MRDGVS 146 (173)
T ss_dssp EETTEE
T ss_pred ecCCEE
Confidence 46643
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.48 E-value=1.5e-15 Score=168.12 Aligned_cols=162 Identities=13% Similarity=0.168 Sum_probs=99.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC-CCceEEECCeecCCC---ChHHHhhccceecccchhhhhhccCCceeEeeecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRTL---GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVP 288 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i~g~~~~~~---~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~ 288 (602)
..+||+|+||||||||+++|+|++.| ++|.|.++|.++... ....+++.+++++|++. ++
T Consensus 46 p~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~-----------l~----- 109 (608)
T 3szr_A 46 PAIAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIE-----------IS----- 109 (608)
T ss_dssp CCEECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CC-----------CC-----
T ss_pred CeEEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeeccccc-----------CC-----
Confidence 45999999999999999999999988 899999999985321 13456788999998621 11
Q ss_pred cceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCC
Q psy3001 289 VSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT 368 (602)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p 368 (602)
...++.++ +. .....+.. .+. +..++++.++.+....|
T Consensus 110 -------------~~~tv~e~--------i~-------~~~~~~~~---------~~~-----~~s~~~i~l~i~~~~~p 147 (608)
T 3szr_A 110 -------------DASEVEKE--------IN-------KAQNAIAG---------EGM-----GISHELITLEISSRDVP 147 (608)
T ss_dssp -------------CHHHHHTT--------HH-------HHHHHHHC---------SSS-----CCCSCCEEEEEEESSSC
T ss_pred -------------CHHHHHHH--------HH-------HHHHHhcC---------Ccc-----ccchHHHHHHhcCCCCC
Confidence 00011110 00 00111100 000 11223333444445689
Q ss_pred CeEEEecc------cccCChhHHHHHHHHHHHh-cc--ccEEEEeeeccccccc-------------CCeEEEEeCceEE
Q psy3001 369 KILILDEA------TAAIDLETDDLIQSTIRSE-FA--HCTVLTIAHRLNTIID-------------SDRVLVLDKGLVV 426 (602)
Q Consensus 369 ~iliLDEp------ts~LD~~~~~~i~~~l~~~-~~--~~tvi~itH~l~~i~~-------------~d~i~~l~~G~i~ 426 (602)
+++++||| |++||+.....+.+.++.+ .+ +.++++++|+++.... ...|.|+.++.++
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 99999999 9999999999999999885 22 4788999999874421 3568899888777
Q ss_pred eecChh
Q psy3001 427 EFDSPS 432 (602)
Q Consensus 427 ~~g~~~ 432 (602)
..|+.+
T Consensus 228 ~~g~~~ 233 (608)
T 3szr_A 228 DKGTED 233 (608)
T ss_dssp SSSSTT
T ss_pred CcccHH
Confidence 766544
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.46 E-value=1e-15 Score=141.04 Aligned_cols=56 Identities=16% Similarity=0.224 Sum_probs=41.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCeecCCCC---hHHHh-hccc----eeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLG---LHTLR-SRLT----IIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~~~~~~---~~~~~-~~i~----~v~Q~ 268 (602)
++++|+|+||||||||+++|.|+++|. .|.|.++|.++.+++ .+.+| +.++ +++|+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~ 69 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPV 69 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCC
Confidence 579999999999999999999999998 899999999987775 56777 5788 67775
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.8e-14 Score=148.48 Aligned_cols=58 Identities=26% Similarity=0.248 Sum_probs=46.4
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
+|||||.++|+++++|||| |+++...+.+. ...|.|+++++|+.+.+..+||+++|..
T Consensus 188 ~La~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~ 245 (356)
T 3jvv_A 188 ALRSALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFP 245 (356)
T ss_dssp HHHHHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSC
T ss_pred HHHHHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcC
Confidence 8999999999999999999 77665544333 3358899999999998855888877643
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.5e-14 Score=145.02 Aligned_cols=158 Identities=18% Similarity=0.166 Sum_probs=95.4
Q ss_pred EEEecCCceEEEEeccCCChhHHHHHHhccc--CCCC----ce-EEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 206 VRYREGLELVGIVGRTGAGKSSLTLALFRII--EPAD----GT-IIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 206 ~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~--~~~~----G~-I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
+.+++| ++++|+|+||||||||++.+++.+ +|+. |. |++++.+.. .++++++++|.+..
T Consensus 126 ggi~~G-~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~------- 191 (349)
T 1pzn_A 126 GGIETQ-AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL------- 191 (349)
T ss_dssp SSEESS-EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC-------
T ss_pred CCCCCC-eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC-------
Confidence 445566 999999999999999999999998 6665 67 888886541 13456666664210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+ . .++ .+ .+. +.. .. .+.+|+|++
T Consensus 192 ----~-------------~------~~v----------------------~~---ni~----~~~---~~-~~~~~~~~l 215 (349)
T 1pzn_A 192 ----D-------------P------DEV----------------------LK---HIY----VAR---AF-NSNHQMLLV 215 (349)
T ss_dssp ----C-------------H------HHH----------------------GG---GEE----EEE---CC-SHHHHHHHH
T ss_pred ----C-------------H------HHH----------------------hh---CEE----EEe---cC-ChHHHHHHH
Confidence 0 0 000 00 000 000 00 014788899
Q ss_pred HHHHHHh-------hCCCeEEEecccccCChhH------------HHHHHHHHHHhc--cccEEEEeeeccccccc-CCe
Q psy3001 359 CLARALL-------RKTKILILDEATAAIDLET------------DDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDR 416 (602)
Q Consensus 359 ~lAral~-------~~p~iliLDEpts~LD~~~------------~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~ 416 (602)
.++++++ .+|+++|+||||+.+|++. ...+...|+.+. .++|||+++|....... ++.
T Consensus 216 ~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~ 295 (349)
T 1pzn_A 216 QQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGD 295 (349)
T ss_dssp HHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------
T ss_pred HHHHHHHHHhccccCCCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCC
Confidence 9999988 5899999999999999852 234444455443 37899999998775543 344
Q ss_pred EEEEeCceEEeecChhH
Q psy3001 417 VLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 417 i~~l~~G~i~~~g~~~~ 433 (602)
..+...|++.+++.+..
T Consensus 296 ~~~~~~G~~l~~~~~~r 312 (349)
T 1pzn_A 296 PTRPIGGHILAHSATLR 312 (349)
T ss_dssp ------CCCCCTTCSEE
T ss_pred ccccCCcceEeecCcEE
Confidence 56666777766655433
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=3.6e-15 Score=143.00 Aligned_cols=55 Identities=7% Similarity=0.167 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHhhCCCeEEEeccccc-------CChhHHHHHHHHHHHh--ccccEEEEeeecc
Q psy3001 354 QRQLICLARALLRKTKILILDEATAA-------IDLETDDLIQSTIRSE--FAHCTVLTIAHRL 408 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~-------LD~~~~~~i~~~l~~~--~~~~tvi~itH~l 408 (602)
|+||+++||+++.+|+++++||||++ ||+..+..+.+.+++. ..|+|++.++|+.
T Consensus 98 ~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 98 RRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp SCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 45789999999999999999999999 9999988888888664 2478999999984
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-13 Score=150.52 Aligned_cols=73 Identities=15% Similarity=0.151 Sum_probs=68.1
Q ss_pred ChhhHHHHHHHHHHhhCC--CeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCc
Q psy3001 351 NVGQRQLICLARALLRKT--KILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p--~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
||||+||++|||||+.+| ++|||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||++++|+++
T Consensus 399 SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 399 SGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp CSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred CHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 479999999999999999 9999999999999999999999999887789999999999987779999999654
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-14 Score=140.78 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||+..++ +++||+|+||||||||+++|+|++ |.+.++ ..++.+++++|+.. +
T Consensus 11 ~~~~l~~isl~i~~g-~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~--~--- 70 (245)
T 2jeo_A 11 VDLGTENLYFQSMRP-FLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRF--Y--- 70 (245)
T ss_dssp ------------CCS-EEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGG--B---
T ss_pred CceeecceeccCCCC-EEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcC--c---
Confidence 345799999999988 999999999999999999999976 444433 35677889998621 0
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+.+ .......+......+.. +..... ....+.++.+.. + .......+| +||+|
T Consensus 71 ---~~l-----~~~~~~~~~~~~~~~~~--------~~~~~~----~~~~~~L~~l~~----~-~~~~~~~ls--~g~~~ 123 (245)
T 2jeo_A 71 ---KVL-----TAEQKAKALKGQYNFDH--------PDAFDN----DLMHRTLKNIVE----G-KTVEVPTYD--FVTHS 123 (245)
T ss_dssp ---CCC-----CHHHHHHHHTTCCCTTS--------GGGBCH----HHHHHHHHHHHT----T-CCEEECCEE--TTTTE
T ss_pred ---ccc-----CHhHhhhhhccCCCCCC--------cccccH----HHHHHHHHHHHC----C-CCeeccccc--ccccC
Confidence 000 00000000000000000 000000 111122222211 1 112223455 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
|+++ ++++.+|+++|||||....+.. +... .+.+|+++||+...+
T Consensus 124 r~~~-~~~~~~~~~lilDg~~~~~~~~--------l~~~-~~~~i~v~th~~~~~ 168 (245)
T 2jeo_A 124 RLPE-TTVVYPADVVLFEGILVFYSQE--------IRDM-FHLRLFVDTDSDVRL 168 (245)
T ss_dssp ECSS-CEEECCCSEEEEECTTTTTSHH--------HHTT-CSEEEEEECCHHHHH
T ss_pred ccCc-eEEecCCCEEEEeCccccccHH--------HHHh-cCeEEEEECCHHHHH
Confidence 9988 6888999999999987776653 2222 368999999974444
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-13 Score=153.77 Aligned_cols=75 Identities=5% Similarity=-0.078 Sum_probs=55.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHH-HHHHHHhc--cccEEEEeeecccccccCCeEEEEeCceEEe
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLI-QSTIRSEF--AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i-~~~l~~~~--~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~ 427 (602)
++.++++.+...+.+|+++|||||++++|+.....+ ...++.+. .++++|++||+.+....||++..+.+|++..
T Consensus 672 ~e~~~~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 672 VEMTETANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 334455555556899999999999999998765554 55666553 3789999999998765588876777777653
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-15 Score=140.07 Aligned_cols=151 Identities=17% Similarity=0.207 Sum_probs=92.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-------------CCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-------------~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
+.++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~----------- 68 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAG----------- 68 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHT-----------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcC-----------
Confidence 7899999999999999999999986 77887 588887777777777765 343
Q ss_pred ceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH---
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ--- 356 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q--- 356 (602)
++++...+... ++. ...... .+..+ . +...+. ... . .|-++
T Consensus 69 ~~l~~~~~~~n-~~g---------------------~~~~~i----~~~~~---~-~~~~~~-~~~--~---~g~~~~~~ 112 (198)
T 1lvg_A 69 DFIEHAEFSGN-LYG---------------------TSKEAV----RAVQA---M-NRICVL-DVD--L---QGVRSIKK 112 (198)
T ss_dssp CEEEEEEETTE-EEE---------------------EEHHHH----HHHHH---T-TCEEEE-ECC--H---HHHHHHTT
T ss_pred CCEeeeeecCc-cCC---------------------CCHHHH----HHHHH---c-CCcEEE-ECC--H---HHHHHHHh
Confidence 33332111000 000 000000 00000 0 000000 000 0 01111
Q ss_pred -HHHHHH-HHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeC
Q psy3001 357 -LICLAR-ALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDK 422 (602)
Q Consensus 357 -rl~lAr-al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~ 422 (602)
++ .|| +++.+|++++|||+|+++|.++++.+.+.+.....+ +.++| +. ..+|+|+++++
T Consensus 113 ~~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 113 TDL-CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SSC-CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred cCC-CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 12 456 788999999999999999999999999888776443 34567 33 55999988764
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.36 E-value=3e-14 Score=148.47 Aligned_cols=147 Identities=12% Similarity=0.118 Sum_probs=89.5
Q ss_pred eeEEEEec--CCceEEEEeccCCChhHHHHHHhcccCCCC----ceEEEC----CeecCCCChHHHhhccceecccchhh
Q psy3001 203 DYKVRYRE--GLELVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIID----GVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 203 ~vs~~~~~--~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~----G~I~i~----g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
.|++.+.+ + +.++|+|+||||||||+++|+|+++|++ |+|.++ |.++ .+....+ +.|++++|++..
T Consensus 160 ~v~~~v~~~lg-~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~- 235 (365)
T 1lw7_A 160 FIPKEARPFFA-KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYID- 235 (365)
T ss_dssp GSCTTTGGGTC-EEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHH-
T ss_pred hCCHHHHHhhh-CeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHH-
Confidence 34444555 5 8899999999999999999999999999 998873 4444 4444445 457777775321
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
+.. ++.+++..... .. ... .... .+ +
T Consensus 236 ~~~-----------------------------t~~~nl~~~~~-~~---~~~--~~~~-----------------~~--~ 261 (365)
T 1lw7_A 236 YAV-----------------------------RHSHKIAFIDT-DF---ITT--QAFC-----------------IQ--Y 261 (365)
T ss_dssp HHH-----------------------------HHCSSEEEESS-CH---HHH--HHHH-----------------HH--H
T ss_pred HHH-----------------------------hccCCEEEEeC-Cc---hHH--HHHH-----------------HH--H
Confidence 100 00000000000 00 000 0000 01 2
Q ss_pred hhHHHHHHHHHHh-hCCCeEEEec---cc------ccCChhHHHHHHHHHHHhcc--ccEEEEeeec
Q psy3001 353 GQRQLICLARALL-RKTKILILDE---AT------AAIDLETDDLIQSTIRSEFA--HCTVLTIAHR 407 (602)
Q Consensus 353 Gq~Qrl~lAral~-~~p~iliLDE---pt------s~LD~~~~~~i~~~l~~~~~--~~tvi~itH~ 407 (602)
|++|+..+++++. .+|++++||| |+ .++|+..+..+.+.+++..+ +.++++++|.
T Consensus 262 ~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~ 328 (365)
T 1lw7_A 262 EGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP 328 (365)
T ss_dssp HSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS
T ss_pred cCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC
Confidence 5567777777764 5899999999 54 57898888888888876543 6788888874
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.36 E-value=2.3e-12 Score=128.96 Aligned_cols=65 Identities=6% Similarity=0.139 Sum_probs=46.9
Q ss_pred cccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccc--cCChhHH---HHHHHHHHHhc--cccEEEEeeeccccc
Q psy3001 342 SHFGETVTGNVGQRQLICLARALLRKTKILILDEATA--AIDLETD---DLIQSTIRSEF--AHCTVLTIAHRLNTI 411 (602)
Q Consensus 342 ~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts--~LD~~~~---~~i~~~l~~~~--~~~tvi~itH~l~~i 411 (602)
......+| +||+|++ ++++.+|+++|+||||+ ++|+... ..+...|+.+. .++|||+++|.....
T Consensus 113 ~~~~~~ls--~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 113 GSLPNIMA--PEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp TSCCCTTS--HHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred CCCcccCC--HHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 33444555 5887765 68889999999999999 8887544 66667777653 379999999987654
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.36 E-value=1e-14 Score=151.35 Aligned_cols=76 Identities=22% Similarity=0.221 Sum_probs=60.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEec-CCccc---cccchhcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QDPVL---FSGTLRLN 559 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~-Qdp~l---f~~Tv~~n 559 (602)
.++|++++|+.++|+|+||||||||+++|+|+++|++|.|.++|. ..+.....++.++|++ |++.+ +..|+++|
T Consensus 167 ~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~ 244 (361)
T 2gza_A 167 FLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATL 244 (361)
T ss_dssp HHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHH
T ss_pred HHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHH
Confidence 588999999999999999999999999999999999999999974 3444445678899999 99875 67799988
Q ss_pred cC
Q psy3001 560 LD 561 (602)
Q Consensus 560 l~ 561 (602)
+.
T Consensus 245 i~ 246 (361)
T 2gza_A 245 LR 246 (361)
T ss_dssp HH
T ss_pred HH
Confidence 74
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=3.6e-13 Score=136.09 Aligned_cols=152 Identities=13% Similarity=0.079 Sum_probs=68.3
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcc-cCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRI-IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~-~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
.+++++|+ ++|+|+||||||||++.|+|. ..|++| |.++|.++.. .. -.+.+++++|.....
T Consensus 13 ~l~~~~~~-------I~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~--~~~~~~~~~q~~~~~------ 75 (301)
T 2qnr_A 13 VKKGFEFT-------LMVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV--QIEASTVEIEERGVK------ 75 (301)
T ss_dssp -----CEE-------EEEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CC------
T ss_pred EEcCCCEE-------EEEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc--eEeeEEEEecCCCcc------
Confidence 45666655 499999999999999999998 889999 8888876643 11 135577787752210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+.+. . -.+..+...... ......+... .....+ .....+| +|||||+
T Consensus 76 -~~lt-v-----------~Dt~g~~~~~~~---~e~~~~l~~~---l~~~~~------------~~~~~~s--gg~rqrv 122 (301)
T 2qnr_A 76 -LRLT-V-----------VDTPGYGDAINC---RDCFKTIISY---IDEQFE------------RYLHDES--GLNRRHI 122 (301)
T ss_dssp -EEEE-E-----------EEEC--------------CTTHHHH---HHHHHH------------HHHHHHT--SSCCTTC
T ss_pred -cCcc-h-----------hhhhhhhhhcCc---HHHHHHHHHH---HHHHHH------------HHHHHhC--HHhhhhh
Confidence 0000 0 000000000000 0000001000 000000 1112234 6999999
Q ss_pred HHHHHHhhCCCeEEEeccccc-CChhHHHHHHHHHHHhcc--ccEEEEeeeccc
Q psy3001 359 CLARALLRKTKILILDEATAA-IDLETDDLIQSTIRSEFA--HCTVLTIAHRLN 409 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~-LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~ 409 (602)
++|||++ ++++||||++ ||+... +.++.+.. +.++|+..||+.
T Consensus 123 ~~ara~~----ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 123 IDNRVHC----CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp CCCCCCE----EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred hhhhhhh----eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999985 9999999986 999774 33333332 578888889874
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.35 E-value=5.3e-14 Score=129.58 Aligned_cols=89 Identities=17% Similarity=0.225 Sum_probs=66.5
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCC---CceEEECCeecCCCC---hhhhh-ccce----EecCCccccccchhcccC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVDIRTLG---LHTLR-SRLT----IIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~---~G~I~i~g~~i~~~~---~~~lr-~~i~----~V~Qdp~lf~~Tv~~nl~ 561 (602)
++++|+|+||||||||+++|+|+++|+ .|+|++||.++..++ .+.+| ++++ +++|++.+| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 468999999999999999999999998 899999999877665 56777 4688 899999888 322
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccc-cccCCCccccCC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSN-LPARLQHEVSEG 598 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~-~~~~l~~~v~~~ 598 (602)
. +++. .+++++++++ +| ++|+.|+|+
T Consensus 77 ----~-~~~~-----~a~l~~~i~~~l~-g~dt~i~Eg 103 (171)
T 2f1r_A 77 ----V-SEEE-----GNDLDWIYERYLS-DYDLVITEG 103 (171)
T ss_dssp ----C-CHHH-----HTCHHHHHHHHTT-TCSEEEEES
T ss_pred ----C-Chhh-----hhCHHHHHHhhCC-CCCEEEECC
Confidence 0 1222 7789999999 99 899999885
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5.2e-14 Score=141.20 Aligned_cols=73 Identities=18% Similarity=0.328 Sum_probs=60.1
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhc-ccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRL-NLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~-nl~ 561 (602)
++++|++++|+++||+||||||||||+++|+|++ +|+| ++|++|+|.+|.+|+++ |+.
T Consensus 117 ~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~~ni~ 175 (305)
T 2v9p_A 117 KLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLADTRAA 175 (305)
T ss_dssp HHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTTCSCE
T ss_pred ccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHHHhhc
Confidence 4689999999999999999999999999999999 7888 46789999999999997 887
Q ss_pred CCCCCcHHHHHHHHHH
Q psy3001 562 PVGESSDEAIWKALEL 577 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~ 577 (602)
+....++ .+++.++.
T Consensus 176 ~~~~~~~-~~~~~i~~ 190 (305)
T 2v9p_A 176 LVDDATH-ACWRYFDT 190 (305)
T ss_dssp EEEEECH-HHHHHHHH
T ss_pred cCccccH-HHHHHHHH
Confidence 5433333 45555444
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=1e-13 Score=144.20 Aligned_cols=119 Identities=23% Similarity=0.297 Sum_probs=84.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC-CceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~-~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
++++|+|||||||||++++|+|+++|+ +|+|.+.+.++. + .++..+++++|..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~---------------------- 190 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQRE---------------------- 190 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEE----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeee----------------------
Confidence 789999999999999999999999998 899987665543 1 2345666666620
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
++.. ...+ +.+|+++|..+|+++
T Consensus 191 -------------------------------------------~g~~------~~~~--------~~~l~~~L~~~pd~i 213 (372)
T 2ewv_A 191 -------------------------------------------VGED------TKSF--------ADALRAALREDPDVI 213 (372)
T ss_dssp -------------------------------------------BTTT------BSCS--------HHHHHHHTTSCCSEE
T ss_pred -------------------------------------------cCCC------HHHH--------HHHHHHHhhhCcCEE
Confidence 0000 0011 358999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEE
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l 420 (602)
++|||+ |+++.. .+++....|.+++.++|..+....+||++.|
T Consensus 214 lldE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l 256 (372)
T 2ewv_A 214 FVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIVDI 256 (372)
T ss_dssp EESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHHHT
T ss_pred EECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHHHh
Confidence 999999 666533 3444444578999999996633336665444
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=1.6e-12 Score=125.10 Aligned_cols=71 Identities=18% Similarity=0.139 Sum_probs=54.0
Q ss_pred hhHHHHHHHHHHhhC-CCeEEEecccccCChhHH--------HHHHHHHHHhcc--ccEEEEeeecccc-----------
Q psy3001 353 GQRQLICLARALLRK-TKILILDEATAAIDLETD--------DLIQSTIRSEFA--HCTVLTIAHRLNT----------- 410 (602)
Q Consensus 353 Gq~Qrl~lAral~~~-p~iliLDEpts~LD~~~~--------~~i~~~l~~~~~--~~tvi~itH~l~~----------- 410 (602)
.|+|+++.+|+++.+ |+++|+||||+.+|+... ..+.+.|+.+.+ ++|+|+++|....
T Consensus 90 ~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~ 169 (220)
T 2cvh_A 90 EQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAE 169 (220)
T ss_dssp HHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCC
T ss_pred HHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCC
Confidence 357899999999986 999999999999997432 234444555432 7899999998763
Q ss_pred --ccc-CCeEEEEeCc
Q psy3001 411 --IID-SDRVLVLDKG 423 (602)
Q Consensus 411 --i~~-~d~i~~l~~G 423 (602)
+.. ||++++|+..
T Consensus 170 ~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 170 QTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHTSSEEEEEEEC
T ss_pred cceeecCcEEEEEEEe
Confidence 344 9999999754
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-13 Score=125.80 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=61.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~ 561 (602)
++||++++|++++|+|+||||||||+++|+|++ |++|+|.++|.++... ...+ .+++|++.+|.-|+.+|+.
T Consensus 25 ~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 25 LLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYHFDLYRLADPEELE 96 (158)
T ss_dssp HHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEEEECTTCSCTTHHH
T ss_pred ccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---CcceeccccccCCcHHHHH
Confidence 489999999999999999999999999999999 9999999999877421 1112 2899999888668988873
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-13 Score=127.55 Aligned_cols=48 Identities=10% Similarity=0.147 Sum_probs=42.6
Q ss_pred CcCCCChhhHHH-HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHh
Q psy3001 346 ETVTGNVGQRQL-ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 346 ~~lsgs~Gq~Qr-l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~ 395 (602)
+.+| +||+|| +..+++++.+|+.+++|||||++|+.....+.+.+.+.
T Consensus 148 D~~s--~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~ 196 (210)
T 1pui_A 148 DKLA--SGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTW 196 (210)
T ss_dssp GGSC--HHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHH
T ss_pred cCCC--chhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHH
Confidence 3455 699999 89999999999999999999999999999999888765
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.3e-13 Score=142.78 Aligned_cols=55 Identities=5% Similarity=0.109 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHhhCCC---eEEEeccc-ccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 353 GQRQLICLARALLRKTK---ILILDEAT-AAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~---iliLDEpt-s~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
+++||++||||++++|+ +|++|||| ++||+....++ +.+..+.++|+|.|+.+.+
T Consensus 122 ~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~l----k~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 122 YLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFM----KRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp HTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHH----HHHTTTSEEEEEEESTTSS
T ss_pred HHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHH----HHHhccCcEEEEEEcccCc
Confidence 67889999999999999 99999999 68998774333 3334578899999987764
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.4e-13 Score=142.75 Aligned_cols=125 Identities=18% Similarity=0.161 Sum_probs=86.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceec-ccchhhhhhccCCceeEeeecccce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP-QVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~-Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
+.++|+|+||||||||+++|+|+++|++|.|.++|. .++.....++.+++++ |++.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~--------------------- 232 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PELFLPDHPNHVHLFYPSEAK--------------------- 232 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCCCCTTCSSEEEEECC-------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cccCccccCCEEEEeecCccc---------------------
Confidence 889999999999999999999999999999999874 3333333445556665 4200
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeE
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKIL 371 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~il 371 (602)
.. .+ ++..++-.|++++..+|+.+
T Consensus 233 -------------------------------------~~-----------------~~--~~~t~~~~i~~~l~~~pd~~ 256 (361)
T 2gza_A 233 -------------------------------------EE-----------------EN--APVTAATLLRSCLRMKPTRI 256 (361)
T ss_dssp --------------------------------------------------------------CCHHHHHHHHTTSCCSEE
T ss_pred -------------------------------------cc-----------------cc--cccCHHHHHHHHHhcCCCEE
Confidence 00 00 25567888999999999999
Q ss_pred EEecccccCChhHHHHHHHHHHHhccc-cEEEEeeecccccccCCeEEEEeCc
Q psy3001 372 ILDEATAAIDLETDDLIQSTIRSEFAH-CTVLTIAHRLNTIIDSDRVLVLDKG 423 (602)
Q Consensus 372 iLDEpts~LD~~~~~~i~~~l~~~~~~-~tvi~itH~l~~i~~~d~i~~l~~G 423 (602)
++||+... ...+.++.+..| .|++...|..+....+||+..+..+
T Consensus 257 l~~e~r~~-------~~~~~l~~l~~g~~~~l~t~H~~~~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 257 LLAELRGG-------EAYDFINVAASGHGGSITSCHAGSCELTFERLALMVLQ 302 (361)
T ss_dssp EESCCCST-------HHHHHHHHHHTTCCSCEEEEECSSHHHHHHHHHHHHTT
T ss_pred EEcCchHH-------HHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHHHHhc
Confidence 99999752 233445555444 5788899986643336776655543
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.31 E-value=6.3e-14 Score=142.93 Aligned_cols=155 Identities=20% Similarity=0.185 Sum_probs=91.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc--------CCCCceEEECCeecCCCC---------------hHHHhhcccee---c
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII--------EPADGTIIIDGVDIRTLG---------------LHTLRSRLTII---P 266 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~--------~~~~G~I~i~g~~~~~~~---------------~~~~~~~i~~v---~ 266 (602)
++++|+|+||||||||++.|.|.. .|+.|+|.+||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 689999999999999999999997 789999999999887653 23455666666 4
Q ss_pred ccchhhhhhccCCceeEeeecccceeeeccccceeecccccccccccccchh-HHHHHHHHHHHH--HHh----hcccCC
Q psy3001 267 QVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNL-QRFYVATSRQLK--RLE----SVSRSP 339 (602)
Q Consensus 267 Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~l~----~~~~~~ 339 (602)
|.+... + ...+..+..+. ....+ ..+.. .+.... .+. .+....
T Consensus 85 q~~~~~----------~-------------~~~v~E~~~l~------~p~~~~~~~~~-~~~~~~~~~l~~~l~~vd~~~ 134 (318)
T 1nij_A 85 DKGNIQ----------F-------------DRLVIECTGMA------DPGPIIQTFFS-HEVLCQRYLLDGVIALVDAVH 134 (318)
T ss_dssp HHTSCC----------C-------------SEEEEEEETTC------CHHHHHHHHHH-SHHHHHHEEEEEEEEEEETTT
T ss_pred hcCCCC----------C-------------CEEEEeCCCCC------CHHHHHHHHhc-CccccCeEEECCEEEEEEHHH
Confidence 542110 0 00111110000 00000 00000 000000 000 000001
Q ss_pred cccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 340 IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 340 ~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
..... ..+| +||+||+..+++++.+|+++ ||| ..+.+.+++...+.+|++++|+...+
T Consensus 135 ~~~~~-~~ls--~g~~Q~~~ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~ 192 (318)
T 1nij_A 135 ADEQM-NQFT--IAQSQVGYADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDIDL 192 (318)
T ss_dssp HHHHH-HHCH--HHHHHHHTCSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCG
T ss_pred HHHHH-hhch--HHHHHHHhCCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCH
Confidence 00000 1234 69999999888888888887 887 56677777776789999999975433
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=1.1e-12 Score=125.97 Aligned_cols=144 Identities=19% Similarity=0.183 Sum_probs=91.0
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeee
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVI 286 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~ 286 (602)
++| ++++|+||||||||||+++|+|+++| ..|.|.+.+.+... ..++.++|++|++..+.....
T Consensus 14 ~~G-~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~--------- 79 (219)
T 1s96_A 14 AQG-TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMIS--------- 79 (219)
T ss_dssp -CC-CEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHH---------
T ss_pred CCC-cEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHh---------
Confidence 445 99999999999999999999999986 68999888765532 124578899886432110000
Q ss_pred cccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhh
Q psy3001 287 VPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLR 366 (602)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~ 366 (602)
.+.+.. . ....+ ...| -.++. ++.++.
T Consensus 80 ----------~~~f~E-------------------------------~------~~~~~-~~yg--~~~~~---v~~~l~ 106 (219)
T 1s96_A 80 ----------RDAFLE-------------------------------H------AEVFG-NYYG--TSREA---IEQVLA 106 (219)
T ss_dssp ----------TTCEEE-------------------------------E------EEETT-EEEE--EEHHH---HHHHHT
T ss_pred ----------cCHHHH-------------------------------H------HHHHh-ccCC--CCHHH---HHHHHh
Confidence 000000 0 00000 0010 11211 344556
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHh
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
.++++||| ||+.+...+.+.+. ++.||++++|+++.+.. |+ +.+| .++++++.
T Consensus 107 ~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 107 TGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp TTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred cCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 68999999 99999998887765 57899999999998765 32 4445 34555543
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-13 Score=135.02 Aligned_cols=67 Identities=16% Similarity=0.103 Sum_probs=42.2
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPV 563 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~ 563 (602)
.+||+||||||||||+++|+|+.+|++|+|.++|+++.. ...++.++|++|++.++.. ||.+|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g 71 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFG 71 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhh
Confidence 489999999999999999999999999999999987743 2346789999999988765 999998654
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.1e-12 Score=126.30 Aligned_cols=91 Identities=19% Similarity=0.154 Sum_probs=61.8
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hhhhccceEecCCcccccc------
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HTLRSRLTIIPQDPVLFSG------ 554 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~lr~~i~~V~Qdp~lf~~------ 554 (602)
+.++||++++|+++||+||||||||||+++|+|++ | |+|.+ |.++...++ ...+++++|+||+|.+|..
T Consensus 13 l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 88 (218)
T 1z6g_A 13 GLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNED 88 (218)
T ss_dssp ---------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTC
T ss_pred ccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhccc
Confidence 44799999999999999999999999999999999 5 99999 887765543 3456789999999977743
Q ss_pred -----chhcccCCCCCCcHHHHHHHHHHcC
Q psy3001 555 -----TLRLNLDPVGESSDEAIWKALELAH 579 (602)
Q Consensus 555 -----Tv~~nl~~~~~~~~~~i~~al~~~~ 579 (602)
++..|.. ..++++++++++...
T Consensus 89 ~l~~~~~~~~~~---g~~~~~i~~~l~~~~ 115 (218)
T 1z6g_A 89 FLEYDNYANNFY---GTLKSEYDKAKEQNK 115 (218)
T ss_dssp EEEEEEETTEEE---EEEHHHHHHHHHTTC
T ss_pred hhhhhhcccccC---CCcHHHHHHHHhCCC
Confidence 2222311 123566777777644
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.24 E-value=1e-12 Score=125.11 Aligned_cols=56 Identities=16% Similarity=0.121 Sum_probs=45.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
++||++||+||||||||||+++|+|+ +|++|+|. +.++. .+....+++++||||+|
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~-~~~~~~~~~ig~v~q~~ 75 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILT-RPAVEAGEKLGFLPGTL 75 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEE-ECSCCTTCCCCSSCC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEec-CCchhhhcceEEecCCH
Confidence 78999999999999999999999999 99999994 33333 22234577899999998
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.5e-12 Score=130.05 Aligned_cols=102 Identities=15% Similarity=0.017 Sum_probs=68.4
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCcc-------------
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPV------------- 550 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~------------- 550 (602)
|++..|++++|+|+||||||||+++|+|+.+|++|+|.+ +|+++.........+.++||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 445678999999999999999999999999999999999 8988876543222246999999984
Q ss_pred ---cccc-chhcccCCCC----CCcHHHHHHHHHHcCCC-cccccccc
Q psy3001 551 ---LFSG-TLRLNLDPVG----ESSDEAIWKALELAHLN-TFVSNLPA 589 (602)
Q Consensus 551 ---lf~~-Tv~~nl~~~~----~~~~~~i~~al~~~~l~-~~~~~~~~ 589 (602)
+|.. |+ +|+.... ...++++.++|+.++|. +..++.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 77 8876421 23456799999999995 55554443
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.22 E-value=2.4e-13 Score=144.74 Aligned_cols=92 Identities=15% Similarity=0.022 Sum_probs=71.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-e-EEECCeecCCCChhhhhccceEecCCccccc----cchh
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-T-IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS----GTLR 557 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~-I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~----~Tv~ 557 (602)
+++|++++|++++|+||||||||||+|+|+|+++|++| + |.+||. .+++++|+||++.+|. .|++
T Consensus 130 ~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------~~~~i~~vpq~~~l~~~~~~~tv~ 200 (460)
T 2npi_A 130 KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------PQQPIFTVPGCISATPISDILDAQ 200 (460)
T ss_dssp HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC---------TTSCSSSCSSCCEEEECCSCCCTT
T ss_pred cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC---------ccCCeeeeccchhhcccccccchh
Confidence 37889999999999999999999999999999999999 9 999981 3678999999996653 3888
Q ss_pred cccCCCC----CCcHHHHHHHHHHcCCCccc
Q psy3001 558 LNLDPVG----ESSDEAIWKALELAHLNTFV 584 (602)
Q Consensus 558 ~nl~~~~----~~~~~~i~~al~~~~l~~~~ 584 (602)
+|+.+.. ...++++.++++.+|+.++.
T Consensus 201 eni~~~~~~~~~~~~~~~~~ll~~~gl~~~~ 231 (460)
T 2npi_A 201 LPTWGQSLTSGATLLHNKQPMVKNFGLERIN 231 (460)
T ss_dssp CTTCSCBCBSSCCSSCCBCCEECCCCSSSGG
T ss_pred hhhcccccccCcchHHHHHHHHHHhCCCccc
Confidence 8872111 11223455666667766543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.1e-11 Score=127.06 Aligned_cols=71 Identities=20% Similarity=0.266 Sum_probs=62.9
Q ss_pred ChhhHHHH------HHHHHHhhC-CCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLI------CLARALLRK-TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl------~lAral~~~-p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+||+||+ ++||++..+ |++|||||||++||+.....+.+.++....+.+||++||+++....||++++++
T Consensus 282 S~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l~ 359 (371)
T 3auy_A 282 SGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINVK 359 (371)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEEE
Confidence 47999988 667999999 999999999999999999999999988755679999999987544499999997
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.21 E-value=3.3e-11 Score=117.59 Aligned_cols=37 Identities=16% Similarity=0.240 Sum_probs=31.9
Q ss_pred ceEEEEeccCCChhHHHHHHhc--ccCC-----CCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR--IIEP-----ADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g--~~~~-----~~G~I~i~g~~ 249 (602)
++++|+|+||||||||++.+++ ..+| ..|.+++++.+
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 8999999999999999999999 4555 57788888764
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.19 E-value=6.7e-12 Score=117.94 Aligned_cols=52 Identities=21% Similarity=0.270 Sum_probs=39.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+|. |+.|.|.++|.++..... .++.+++++|.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~ 61 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQS 61 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccch
Confidence 89999999999999999999998 788999999876532110 12335666664
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.19 E-value=2.7e-11 Score=125.49 Aligned_cols=139 Identities=18% Similarity=0.261 Sum_probs=75.1
Q ss_pred EEEEeccCCChhHHHHHHhc-ccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 215 VGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g-~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
+.|+||+|+||||+++++++ ++.|..|.+.++|.+.... ...+..+++++|. +++..
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~--~~~~~~~~~~~~~-----------~~~~~--------- 96 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTA--SNRKLELNVVSSP-----------YHLEI--------- 96 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECS-----------SEEEE---------
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccc--ccccceeeeeccc-----------ceEEe---------
Confidence 89999999999999999999 8899999999999776432 2225667777764 11110
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEE
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliL 373 (602)
+..... ... . ....+..+.+.. ..+ ..... .+| | +..+|+++|+
T Consensus 97 ---------~~~~~~-----~~~---~--~~~~~~i~~~~~--~~~-~~~~~-~ls---~----------l~~~~~vlil 140 (354)
T 1sxj_E 97 ---------TPSDMG-----NND---R--IVIQELLKEVAQ--MEQ-VDFQD-SKD---G----------LAHRYKCVII 140 (354)
T ss_dssp ---------CCC---------CC---H--HHHHHHHHHHTT--TTC---------------------------CCEEEEE
T ss_pred ---------cHhhcC-----Ccc---h--HHHHHHHHHHHH--hcc-ccccc-ccc---c----------cCCCCeEEEE
Confidence 000000 000 0 001111111100 000 00000 223 2 6789999999
Q ss_pred ecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 374 DEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 374 DEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
|||++ ||+.+...+.+.+.+...++++|++||+++.+.
T Consensus 141 DE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~l~ 178 (354)
T 1sxj_E 141 NEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPII 178 (354)
T ss_dssp ECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSC
T ss_pred eCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHH
Confidence 99999 999999999999988777789999999987664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.19 E-value=3.8e-12 Score=128.31 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=62.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh--hccceEecCCcc-ccc-cc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQDPV-LFS-GT 555 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l--r~~i~~V~Qdp~-lf~-~T 555 (602)
.++|++++|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ |.+++||+|++. ++. .|
T Consensus 92 ~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~~ 171 (302)
T 3b9q_A 92 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 171 (302)
T ss_dssp SCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHHH
T ss_pred ccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHHH
Confidence 4788999999999999999999999999999999999999999988765431 222 457999999987 654 37
Q ss_pred hhccc
Q psy3001 556 LRLNL 560 (602)
Q Consensus 556 v~~nl 560 (602)
+++|+
T Consensus 172 v~e~l 176 (302)
T 3b9q_A 172 LSKAV 176 (302)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77775
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.18 E-value=3e-13 Score=127.20 Aligned_cols=77 Identities=14% Similarity=0.048 Sum_probs=54.7
Q ss_pred hhhHHHHHHHH------HHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeec-cccccc-CCeEEEEeC
Q psy3001 352 VGQRQLICLAR------ALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHR-LNTIID-SDRVLVLDK 422 (602)
Q Consensus 352 ~Gq~Qrl~lAr------al~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~-l~~i~~-~d~i~~l~~ 422 (602)
+|++|++.++. ++..+|+...+|+ ++|+..... ++.++... .+.++|..+|. ++.+.. ||+|+ ++
T Consensus 97 ~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~ 170 (189)
T 2bdt_A 97 KVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TN 170 (189)
T ss_dssp HCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HC
T ss_pred cccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hC
Confidence 46777777777 8888888888884 789887777 77776654 35799999999 999988 99998 99
Q ss_pred ceEEeecChhHH
Q psy3001 423 GLVVEFDSPSVL 434 (602)
Q Consensus 423 G~i~~~g~~~~l 434 (602)
|+++..|+++-+
T Consensus 171 g~~~~~~~~~~~ 182 (189)
T 2bdt_A 171 PRFIFCMAGDPL 182 (189)
T ss_dssp GGGSCC------
T ss_pred CcEEEeecCCch
Confidence 999988877654
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=6.9e-12 Score=130.38 Aligned_cols=90 Identities=24% Similarity=0.257 Sum_probs=74.3
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecC-----Cccccccchhccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQ-----DPVLFSGTLRLNL 560 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q-----dp~lf~~Tv~~nl 560 (602)
+.+++|+.++|+||||||||||+++|+|+++|+ +|+|.+.|.++.. .++..+++|+| +|..|..+++.|+
T Consensus 131 l~~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~----~~~~~~~~v~Q~~~g~~~~~~~~~l~~~L 206 (372)
T 2ewv_A 131 LCHRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY----VFKHKKSIVNQREVGEDTKSFADALRAAL 206 (372)
T ss_dssp HTTSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS----CCCCSSSEEEEEEBTTTBSCSHHHHHHHT
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh----hhccCceEEEeeecCCCHHHHHHHHHHHh
Confidence 347899999999999999999999999999998 8999877765542 35678999999 8889999999998
Q ss_pred CCCCCC-------cHHHHHHHHHHcCC
Q psy3001 561 DPVGES-------SDEAIWKALELAHL 580 (602)
Q Consensus 561 ~~~~~~-------~~~~i~~al~~~~l 580 (602)
...++. +.+.++.+++.++.
T Consensus 207 ~~~pd~illdE~~d~e~~~~~l~~~~~ 233 (372)
T 2ewv_A 207 REDPDVIFVGEMRDLETVETALRAAET 233 (372)
T ss_dssp TSCCSEEEESCCCSHHHHHHHHHHHTT
T ss_pred hhCcCEEEECCCCCHHHHHHHHHHHhc
Confidence 754443 66778888887764
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.16 E-value=3.6e-11 Score=127.93 Aligned_cols=71 Identities=21% Similarity=0.297 Sum_probs=64.5
Q ss_pred ChhhHHHHHHHHHHh----hCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEEe
Q psy3001 351 NVGQRQLICLARALL----RKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 351 s~Gq~Qrl~lAral~----~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
|+|||||++||++|+ .+|+++||||||++||+.....+.+.++.... +.++|+|||+...+..||+++++.
T Consensus 335 S~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 335 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred CcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 579999999999999 57999999999999999999999999988754 689999999987776799999986
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.15 E-value=4.4e-12 Score=132.61 Aligned_cols=90 Identities=19% Similarity=0.136 Sum_probs=70.1
Q ss_pred cceeeEEecce--------------------eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccc
Q psy3001 483 GLVGLSVSYAM--------------------QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRL 542 (602)
Q Consensus 483 ~~~~l~i~~Ge--------------------~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i 542 (602)
.+++|++++|+ ++||+|+||||||||+|+|+|+++|++|+|.++|.++. | .
T Consensus 40 ~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~--~ 110 (413)
T 1tq4_A 40 NLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M--E 110 (413)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C--C
T ss_pred hhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e--e
Confidence 35788888888 99999999999999999999999999999999997653 1 2
Q ss_pred eEecCCccccccchhcccCCCCCCcHHHHHHHHHHcCCCcc
Q psy3001 543 TIIPQDPVLFSGTLRLNLDPVGESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 543 ~~V~Qdp~lf~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~ 583 (602)
++++|++....-|+++|+.... .++++.++++.+++.++
T Consensus 111 ~~v~q~~~~~~ltv~D~~g~~~--~~~~~~~~L~~~~L~~~ 149 (413)
T 1tq4_A 111 RHPYKHPNIPNVVFWDLPGIGS--TNFPPDTYLEKMKFYEY 149 (413)
T ss_dssp CEEEECSSCTTEEEEECCCGGG--SSCCHHHHHHHTTGGGC
T ss_pred EEeccccccCCeeehHhhcccc--hHHHHHHHHHHcCCCcc
Confidence 8899997544568988876432 23457888898888764
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.15 E-value=1.2e-11 Score=118.00 Aligned_cols=70 Identities=16% Similarity=0.065 Sum_probs=49.8
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
.++.+||++||+||||||||||+++|+|+++ +|.+++......+....+++++|+||++.+|.. |+.+|+
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l 85 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGEL 85 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhcCCc
Confidence 6899999999999999999999999999996 455554222222222346789999999987754 666665
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.14 E-value=5e-12 Score=119.72 Aligned_cols=81 Identities=25% Similarity=0.296 Sum_probs=66.9
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC-------------CCCceEEECCeecCCCChhhhhccceEecCCccccccch
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv 556 (602)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|++++|.+++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 4788999999999999999999999986 78887 588888888888888765 79999999999
Q ss_pred hcccCCCCCCcHHHHHHHHHHc
Q psy3001 557 RLNLDPVGESSDEAIWKALELA 578 (602)
Q Consensus 557 ~~nl~~~~~~~~~~i~~al~~~ 578 (602)
..|+.. .++++++++++..
T Consensus 77 ~~n~~g---~~~~~i~~~~~~~ 95 (198)
T 1lvg_A 77 SGNLYG---TSKEAVRAVQAMN 95 (198)
T ss_dssp TTEEEE---EEHHHHHHHHHTT
T ss_pred cCccCC---CCHHHHHHHHHcC
Confidence 999832 3778899998764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-11 Score=124.03 Aligned_cols=75 Identities=15% Similarity=0.245 Sum_probs=61.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcccCCCC--C
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLDPVG--E 565 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~~~~--~ 565 (602)
++++|+++||+|+||||||||+++|+|+++|+.|. +++++|+||+++++.|+++|+.... .
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 37899999999999999999999999999997663 4699999999999889999985321 1
Q ss_pred ----CcHHHHHHHHHHcC
Q psy3001 566 ----SSDEAIWKALELAH 579 (602)
Q Consensus 566 ----~~~~~i~~al~~~~ 579 (602)
...+.+.+.++.++
T Consensus 149 ~~~~~d~~~~~~~L~~l~ 166 (312)
T 3aez_A 149 FPESYNRRALMRFVTSVK 166 (312)
T ss_dssp SGGGBCHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhC
Confidence 23456777887776
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.12 E-value=1.2e-11 Score=127.04 Aligned_cols=77 Identities=16% Similarity=0.145 Sum_probs=64.0
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh--hccceEecCCcc-ccc-cc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL--RSRLTIIPQDPV-LFS-GT 555 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l--r~~i~~V~Qdp~-lf~-~T 555 (602)
.++|++++|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+..... ..+ |.+++|++|++. ++. .|
T Consensus 149 ~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~t 228 (359)
T 2og2_A 149 ELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAATV 228 (359)
T ss_dssp SCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHHH
T ss_pred CcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhhh
Confidence 4788999999999999999999999999999999999999999988765421 122 457999999987 553 47
Q ss_pred hhccc
Q psy3001 556 LRLNL 560 (602)
Q Consensus 556 v~~nl 560 (602)
+++|+
T Consensus 229 v~e~l 233 (359)
T 2og2_A 229 LSKAV 233 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77765
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=2.4e-12 Score=133.93 Aligned_cols=103 Identities=13% Similarity=0.151 Sum_probs=77.3
Q ss_pred ceeeEEec--ceeEEEECCCCCChHHHHHHHHhccCCCC----ceEEEC----CeecCCCChhhhhccceEecCCccccc
Q psy3001 484 LVGLSVSY--AMQVGIVGRTGAGKSSLTLALFRIIEPAD----GTIIID----GVDIRTLGLHTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 484 ~~~l~i~~--Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~----G~I~i~----g~~i~~~~~~~lr~~i~~V~Qdp~lf~ 553 (602)
.+++++.+ |++++|+|+||||||||+++|+|+++|++ |+|.++ |.++ ..+..++ ++|++++|++.+|.
T Consensus 160 ~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~~~~ 237 (365)
T 1lw7_A 160 FIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYIDYA 237 (365)
T ss_dssp GSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHHHHH
T ss_pred hCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHHHHH
Confidence 58999999 99999999999999999999999999999 998873 5555 4445555 56999999999999
Q ss_pred cchhcccCCCCC-CcHHHHHHHHHHcCCCccccccc
Q psy3001 554 GTLRLNLDPVGE-SSDEAIWKALELAHLNTFVSNLP 588 (602)
Q Consensus 554 ~Tv~~nl~~~~~-~~~~~i~~al~~~~l~~~~~~~~ 588 (602)
.|+++|+..... ..+......+.......++.+.+
T Consensus 238 ~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 273 (365)
T 1lw7_A 238 VRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMI 273 (365)
T ss_dssp HHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHH
Confidence 999999864332 23344444444444444444433
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.5e-10 Score=120.82 Aligned_cols=55 Identities=24% Similarity=0.295 Sum_probs=36.9
Q ss_pred ceEEEEeccCCChhHHHH--HHhcccCCCCc-----eEEECCeecC-CCChHHHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTL--ALFRIIEPADG-----TIIIDGVDIR-TLGLHTLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~--ll~g~~~~~~G-----~I~i~g~~~~-~~~~~~~~~~i~~v~Q 267 (602)
++++|+|+||||||||++ ++.+..+++.| .+++++.+.. ......+.+.+++.+|
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 899999999999999999 44577766444 7888876531 1112233455555544
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-10 Score=116.00 Aligned_cols=56 Identities=20% Similarity=0.273 Sum_probs=46.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccc--eeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLT--IIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~--~v~Q~ 268 (602)
++++|+|+|||||||+++.|+|++.|++|+|.+.|.|+......+ +++.++ +++|.
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~ 191 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHS 191 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecc
Confidence 899999999999999999999999999999999999987665432 344444 66664
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=8.2e-11 Score=109.46 Aligned_cols=46 Identities=13% Similarity=0.180 Sum_probs=38.6
Q ss_pred hhCCCeEEEecccc-cCChhHHHHHHHHHHHhc-cccEEEEeeecccc
Q psy3001 365 LRKTKILILDEATA-AIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNT 410 (602)
Q Consensus 365 ~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~ 410 (602)
+.+|++|+||||++ ++|+.....+.+.+.... .++++|++||....
T Consensus 98 ~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 98 VLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred hcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEEcCCChh
Confidence 55999999999985 899999888888887654 57899999998643
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.08 E-value=4.1e-11 Score=125.14 Aligned_cols=171 Identities=15% Similarity=0.086 Sum_probs=90.5
Q ss_pred EeeeEEEEecCCce--EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 201 FKDYKVRYREGLEL--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 201 ~~~vs~~~~~~~e~--~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
++++||++.+| ++ ++|+|+||||||||+++|+|+. ++|.++....+...++.+++++|++...
T Consensus 30 L~~vsl~i~~G-ei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~------ 94 (427)
T 2qag_B 30 DQLVNKSVSQG-FCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVR------ 94 (427)
T ss_dssp HHHHHHSCC-C-CEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CE------
T ss_pred cCCCceEecCC-CeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccc------
Confidence 89999999998 99 9999999999999999999984 3444444333333456789999873210
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHH-HHHHHHHHHHhhccc------C-C---cc---ccc
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATSRQLKRLESVSR------S-P---IY---SHF 344 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~------~-~---~~---~~~ 344 (602)
+.+.. ..+..+...+... ........+. ....+.+........ + . .+ ...
T Consensus 95 -~~ltv------------~D~~~~g~~~~~~---~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 95 -LKLTI------------VSTVGFGDQINKE---DSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp -EEEEE------------EEEECCCC-CCHH---HHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred -cccch------------hhhhhhhhccccc---hhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 00000 0000000000000 0000000010 111111111100010 0 0 00 011
Q ss_pred CCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH-hc-cccEEEEeeec
Q psy3001 345 GETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS-EF-AHCTVLTIAHR 407 (602)
Q Consensus 345 ~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~ 407 (602)
+..++ ..-+.++++|..+++++++|+|+..|.+.....+.+.+++ +. .|.+|+.++.+
T Consensus 159 ~~~l~-----~~Dieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 159 GHSLK-----SLDLVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp C---C-----HHHHHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CCCCC-----HHHHHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 11111 2238999999999999999999999998888888888876 43 47889988864
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.07 E-value=2.5e-11 Score=128.31 Aligned_cols=77 Identities=17% Similarity=0.203 Sum_probs=63.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC----hh--hhhccceEecCCcccc-ccch
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LH--TLRSRLTIIPQDPVLF-SGTL 556 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~----~~--~lr~~i~~V~Qdp~lf-~~Tv 556 (602)
+++|++.+|++++|+|+||||||||+++|+|++++++|+|.++|.|+.... .. ..|++++||+|++.++ ..|+
T Consensus 285 ~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~tV 364 (503)
T 2yhs_A 285 PLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASVI 364 (503)
T ss_dssp CCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHHH
T ss_pred CceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHHH
Confidence 588999999999999999999999999999999999999999887765421 11 2367899999998654 3477
Q ss_pred hccc
Q psy3001 557 RLNL 560 (602)
Q Consensus 557 ~~nl 560 (602)
++|+
T Consensus 365 ~e~l 368 (503)
T 2yhs_A 365 FDAI 368 (503)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7665
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.07 E-value=2.2e-11 Score=120.24 Aligned_cols=86 Identities=24% Similarity=0.220 Sum_probs=64.2
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecC-----CccccccchhcccCC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQ-----DPVLFSGTLRLNLDP 562 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Q-----dp~lf~~Tv~~nl~~ 562 (602)
+++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++| ++..|..+++.++..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~~~la~aL~~ 97 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFADALRAALRE 97 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHHHHHHHHHHH
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999999999999998 999999998876543 334678888 555565566666532
Q ss_pred CC-------CCcHHHHHHHHHHc
Q psy3001 563 VG-------ESSDEAIWKALELA 578 (602)
Q Consensus 563 ~~-------~~~~~~i~~al~~~ 578 (602)
.+ ..+.+.++.+++.+
T Consensus 98 ~p~illlDEp~D~~~~~~~l~~~ 120 (261)
T 2eyu_A 98 DPDVIFVGEMRDLETVETALRAA 120 (261)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHH
T ss_pred CCCEEEeCCCCCHHHHHHHHHHH
Confidence 11 11455566666544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.05 E-value=7e-11 Score=112.22 Aligned_cols=71 Identities=20% Similarity=0.112 Sum_probs=55.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
|+++.+|++++|+||||||||||+++|+|+++ .+.+++.++...+....+.+++|++|++..|.. ++.+|+
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAF 72 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcE
Confidence 46778999999999999999999999999974 688888888776666667889999999987754 444443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.04 E-value=2.8e-10 Score=102.34 Aligned_cols=42 Identities=14% Similarity=0.067 Sum_probs=31.8
Q ss_pred hhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccE-EEEeeec
Q psy3001 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCT-VLTIAHR 407 (602)
Q Consensus 365 ~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~t-vi~itH~ 407 (602)
+.+|++|+||||++ ++...++.+.+.+.... .+++ +|++||.
T Consensus 81 ~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 81 AFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 45799999999998 66555778888887754 3577 7777775
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.03 E-value=9.2e-11 Score=118.18 Aligned_cols=70 Identities=17% Similarity=0.071 Sum_probs=57.3
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-h---hh--hccceEecCCcccccc-chhccc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-H---TL--RSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~---~l--r~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+|++++|+||||||||||+++|+|+++|++|+|.++|.|+..... + .+ |.+++||+|++.+++. |+++|+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v 177 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAV 177 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHH
Confidence 689999999999999999999999999999999999999865442 2 22 4579999999876543 555543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.03 E-value=6.7e-11 Score=119.45 Aligned_cols=100 Identities=13% Similarity=-0.013 Sum_probs=67.6
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCccc-----c-ccchhc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVL-----F-SGTLRL 558 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~l-----f-~~Tv~~ 558 (602)
++..|++++++|+||||||||+++|+ +.+|++|+|.+ +|+++...+.....+.++||+|+|-+ | .-|+ +
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 34468899999999999999999999 99999999999 89887654322112369999999943 2 3367 6
Q ss_pred cc--CC----------CC----CCcHHHHHHHHHHcCCCc-ccccccc
Q psy3001 559 NL--DP----------VG----ESSDEAIWKALELAHLNT-FVSNLPA 589 (602)
Q Consensus 559 nl--~~----------~~----~~~~~~i~~al~~~~l~~-~~~~~~~ 589 (602)
|+ .. .+ ....+.+.++++.++|.+ ..++.|.
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 286 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK 286 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH
Confidence 76 21 11 123467999999999986 4444433
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-11 Score=114.97 Aligned_cols=86 Identities=20% Similarity=0.107 Sum_probs=63.0
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCC--CCceEEECCeecCCCChhhhhccceEecCCcccccc-ch----hccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TL----RLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv----~~nl 560 (602)
..++|+.++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..+++++|+||++.+|.. ++ .+|+
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~~ 87 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEHA 87 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHHH
Confidence 4678999999999999999999999999986 68888888755322 235689999999988865 55 5666
Q ss_pred CCCCC---CcHHHHHHHHHH
Q psy3001 561 DPVGE---SSDEAIWKALEL 577 (602)
Q Consensus 561 ~~~~~---~~~~~i~~al~~ 577 (602)
..... .+.+++.++++.
T Consensus 88 ~~~~~~yg~~~~~v~~~l~~ 107 (219)
T 1s96_A 88 EVFGNYYGTSREAIEQVLAT 107 (219)
T ss_dssp EETTEEEEEEHHHHHHHHTT
T ss_pred HHHhccCCCCHHHHHHHHhc
Confidence 43221 245567776653
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=2.4e-11 Score=124.58 Aligned_cols=69 Identities=20% Similarity=0.174 Sum_probs=54.4
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh----HHHhhccceecccch
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQVLA 270 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~----~~~~~~i~~v~Q~~~ 270 (602)
+++++++..++ ++++|+|+||||||||+++|+|++.|++|+|.+.|.++..... ...+..+++++|++.
T Consensus 45 l~~i~~~~~~g-~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~ 117 (337)
T 2qm8_A 45 IDAVLPQTGRA-IRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 117 (337)
T ss_dssp HHHHGGGCCCS-EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTT
T ss_pred HHhCCcccCCC-eEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCcc
Confidence 33444444444 8999999999999999999999999999999999988754321 234678999999754
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.2e-12 Score=126.69 Aligned_cols=37 Identities=16% Similarity=0.329 Sum_probs=34.3
Q ss_pred ceEEEEeccCCChhHHHHHHh---cccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~i~g~~ 249 (602)
++++|+|+|||||||++++|+ |+..|+.|+|.++|.+
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~ 67 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIK 67 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHh
Confidence 789999999999999999999 9999999999887654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.98 E-value=8.1e-12 Score=119.28 Aligned_cols=38 Identities=29% Similarity=0.544 Sum_probs=32.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC---CCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP---ADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~---~~G~I~i~g~~~ 250 (602)
++++|+|+||||||||+++|+|+++| ..|.|.+||..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~ 63 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL 63 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC
Confidence 89999999999999999999999986 467777766543
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.98 E-value=2.8e-10 Score=120.27 Aligned_cols=65 Identities=20% Similarity=0.264 Sum_probs=52.1
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC------hHHHhhccceeccc
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG------LHTLRSRLTIIPQV 268 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~------~~~~~~~i~~v~Q~ 268 (602)
++||+..+| ++++|+|+||||||||+++|+|++.|++|+|.++|.+..... ....++.+++++|.
T Consensus 285 ~Isl~i~~G-eVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~ 355 (503)
T 2yhs_A 285 PLNVEGKAP-FVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQH 355 (503)
T ss_dssp CCCCCSCTT-EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCS
T ss_pred CceeeccCC-eEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecc
Confidence 455655555 999999999999999999999999999999999877764321 11236789999986
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=98.98 E-value=7.2e-11 Score=121.03 Aligned_cols=70 Identities=26% Similarity=0.271 Sum_probs=61.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhhhccceEecCCccccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTLRSRLTIIPQDPVLFS 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~lr~~i~~V~Qdp~lf~ 553 (602)
.++|++.+|++++|+|+||||||||+++|+|+++|++|+|.+.|.|+..... ...|+++++++|+|.+|.
T Consensus 47 ~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~i~~v~q~~~~~~ 120 (337)
T 2qm8_A 47 AVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFI 120 (337)
T ss_dssp HHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEE
T ss_pred hCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhhheeeccCccccc
Confidence 5789999999999999999999999999999999999999999998865432 345778999999998874
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.98 E-value=1.8e-10 Score=117.89 Aligned_cols=96 Identities=18% Similarity=0.072 Sum_probs=65.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccC-CCCceEEEC-CeecCCCChhhhhccceEecCCcccccc-chhcccCCCCCCc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIID-GVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDPVGESS 567 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~-g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~~~~~~ 567 (602)
+|++++|+|+||||||||+++|+|+.+ |++|+|.++ |.+... ..+..++++||++.+++. ||+++... ..+
T Consensus 214 ~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t----t~~~~i~~v~q~~~l~dtpgv~e~~l~--~l~ 287 (358)
T 2rcn_A 214 TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT----TTAARLYHFPHGGDVIDSPGVREFGLW--HLE 287 (358)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHHTCCCC--CCC
T ss_pred CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc----eEEEEEEEECCCCEecCcccHHHhhhc--CCC
Confidence 688999999999999999999999999 999999987 765432 235679999999988754 88886322 223
Q ss_pred HHH----HHHHHHHcCCCccccccccCCC
Q psy3001 568 DEA----IWKALELAHLNTFVSNLPARLQ 592 (602)
Q Consensus 568 ~~~----i~~al~~~~l~~~~~~~~~~l~ 592 (602)
.++ +.++++.+++.+|.+..+..++
T Consensus 288 ~~e~~~~~~e~l~~~gl~~f~~~~~~~lS 316 (358)
T 2rcn_A 288 PEQITQGFVEFHDYLGHCKYRDCKHDADP 316 (358)
T ss_dssp HHHHHHTSGGGGGGTTCSSSTTCCSSSCT
T ss_pred HHHHHHHHHHHHHHcCCchhcCCCcccCC
Confidence 332 5677888888887776665553
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.97 E-value=6.2e-11 Score=125.46 Aligned_cols=76 Identities=14% Similarity=0.110 Sum_probs=61.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe---ecCCCC-----hhhhhccceEecCC-cccc-c
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV---DIRTLG-----LHTLRSRLTIIPQD-PVLF-S 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~---~i~~~~-----~~~lr~~i~~V~Qd-p~lf-~ 553 (602)
.+ |++.+|++++|+|+||||||||+++|+|+.+|++|.|.++|+ ++.... ...+++.++|++|+ ...+ .
T Consensus 150 ~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~ 228 (438)
T 2dpy_A 150 AL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLR 228 (438)
T ss_dssp HH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHH
T ss_pred ee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHH
Confidence 58 999999999999999999999999999999999999999998 554321 34577889999995 3333 3
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
-|+.+|+
T Consensus 229 ~~v~~~~ 235 (438)
T 2dpy_A 229 MQGAAYA 235 (438)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 3666554
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-10 Score=120.65 Aligned_cols=76 Identities=25% Similarity=0.140 Sum_probs=53.8
Q ss_pred ccceeeEEeccee--EEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccc-cchhc
Q psy3001 482 AGLVGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRL 558 (602)
Q Consensus 482 ~~~~~l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~ 558 (602)
+.+++|++++|++ +||+|+||||||||+++|+|+. ++|.++....+...++.++|++|++.++. -||.+
T Consensus 30 L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D 101 (427)
T 2qag_B 30 DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVS 101 (427)
T ss_dssp HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEEEEEEEC--CEEEEEEEE
T ss_pred cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeEEEEeecCccccccchhh
Confidence 3468999999999 9999999999999999999994 45555544444445668999999998774 49999
Q ss_pred ccCCCCC
Q psy3001 559 NLDPVGE 565 (602)
Q Consensus 559 nl~~~~~ 565 (602)
|+.....
T Consensus 102 ~~~~g~~ 108 (427)
T 2qag_B 102 TVGFGDQ 108 (427)
T ss_dssp EECCCC-
T ss_pred hhhhhhc
Confidence 9876544
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=6.9e-11 Score=116.31 Aligned_cols=100 Identities=23% Similarity=0.189 Sum_probs=73.4
Q ss_pred ecceeEEEECCCCCChHHHHHHHH---hccCCCCceEE--------ECCeecC-CCChhhhhccceEecCCc------cc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALF---RIIEPADGTII--------IDGVDIR-TLGLHTLRSRLTIIPQDP------VL 551 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~---g~~~~~~G~I~--------i~g~~i~-~~~~~~lr~~i~~V~Qdp------~l 551 (602)
.+|++++|+|++||||||++++|+ |+..+++|.+. .+|.++. .....++++++++++|++ ++
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 104 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVIL 104 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEE
Confidence 678999999999999999999999 99999999998 8998884 445678899999999754 45
Q ss_pred cccchhcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCccc
Q psy3001 552 FSGTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEV 595 (602)
Q Consensus 552 f~~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v 595 (602)
+..++.+|+. .+++..++..+.....+......+...+
T Consensus 105 ~~~~v~~~i~------~~~v~~~~s~~~~~~~vr~~l~~~~~~~ 142 (252)
T 4e22_A 105 EGEDVSNEIR------TETVGNTASQAAAFPRVREALLRRQRAF 142 (252)
T ss_dssp TTEECTTGGG------SHHHHHHHHHHTTSHHHHHHHHHHHHTT
T ss_pred CCeehhHHHH------HHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 5667777764 3455555555555444433333333333
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.3e-10 Score=121.52 Aligned_cols=68 Identities=13% Similarity=0.104 Sum_probs=56.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh--------hhccceEecCCcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT--------LRSRLTIIPQDPV 550 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~--------lr~~i~~V~Qdp~ 550 (602)
+.+++|++++ +++||+||||||||||+++|+|+++|++|+|.++|+++...+... ++..+.|+.+++.
T Consensus 20 l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~ 95 (483)
T 3euj_A 20 FFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTSSSRDKGLYGKLKAGVCYAVLETV 95 (483)
T ss_dssp EEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCCCSSCCSCGGGSCSSEEEEEEEEE
T ss_pred ccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCchhHHhHHHHHhcCCCceEEEEehh
Confidence 3468999999 999999999999999999999999999999999999887654331 2234567766653
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.92 E-value=2.2e-10 Score=117.08 Aligned_cols=62 Identities=15% Similarity=0.272 Sum_probs=53.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 547 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Q 547 (602)
.+++++++|+.++|+|+||||||||+++|+|+++|++|.|.++|.+ .+.....++.+++++|
T Consensus 163 ~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~g 224 (330)
T 2pt7_A 163 AIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFFG 224 (330)
T ss_dssp HHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEECB
T ss_pred hhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEeC
Confidence 4789999999999999999999999999999999999999999865 2333345677888875
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2.8e-10 Score=111.47 Aligned_cols=65 Identities=17% Similarity=0.267 Sum_probs=45.9
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
+.++||++++|+++||+|+||||||||+++|+|++ |.+.++ ..++.++|++||++...-|+.+|+
T Consensus 15 l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~~~~ 79 (245)
T 2jeo_A 15 TENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAEQKA 79 (245)
T ss_dssp --------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHHHHH
T ss_pred ecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHhHhh
Confidence 45699999999999999999999999999999987 666554 346789999999733233676654
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5e-10 Score=106.86 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=62.3
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc---chhccc--CCC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG---TLRLNL--DPV 563 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~---Tv~~nl--~~~ 563 (602)
.++|+++||+|+||||||||+++|+|+++| +++||+||++++.. |++++. ...
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 467899999999999999999999999864 58999999988743 455543 221
Q ss_pred --CCCcHHHHHHHHHHcCCCccccccccCCCccccC
Q psy3001 564 --GESSDEAIWKALELAHLNTFVSNLPARLQHEVSE 597 (602)
Q Consensus 564 --~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~ 597 (602)
.....+++.++++.+++.+.+.. | .+++..++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~-~-~~~~s~g~ 94 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPVEM-P-VYDFRAYT 94 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCEEE-C-CEETTTTE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCcCC-C-cccCcccC
Confidence 12345778999999998887765 3 34444444
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.4e-10 Score=114.83 Aligned_cols=95 Identities=19% Similarity=0.156 Sum_probs=57.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEE---CCeecCCCChhhhhccceEecCCccccc-----cchhc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVLFS-----GTLRL 558 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-----~Tv~~ 558 (602)
+++.+|++++|+|+||||||||+++|+|+.+|++|+|.+ +|+++.+.. ...+..++|++|.|-++. -|+ +
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 556789999999999999999999999999999999998 787766532 222223899999996543 356 6
Q ss_pred ccC---C-----------C----CCCcHHHHHHHHHHcCCCcc
Q psy3001 559 NLD---P-----------V----GESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 559 nl~---~-----------~----~~~~~~~i~~al~~~~l~~~ 583 (602)
|+. + . ....+..+.++++..++.+.
T Consensus 246 ~l~~~f~~~~~~~~~C~f~~c~h~~e~~~~v~~aLe~~~L~~~ 288 (307)
T 1t9h_A 246 ELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGELKQY 288 (307)
T ss_dssp HHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTSSCHH
T ss_pred HHHHHHHHHHHHhhhccccCCCCccCHHHHHHHHHHhCCChHH
Confidence 652 1 1 11234579999999999764
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.89 E-value=2.4e-10 Score=126.38 Aligned_cols=72 Identities=17% Similarity=0.280 Sum_probs=50.1
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCC-CCceEEECCeecCC--C-ChhhhhccceEecCCcccccc-chhccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP-ADGTIIIDGVDIRT--L-GLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-~~G~I~i~g~~i~~--~-~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
+++++. +||+|+||||||||+++|+|++.| ++|+|.++|.++.. . ....++++++|+||++.+++. ||++|+
T Consensus 42 ~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i 118 (608)
T 3szr_A 42 DLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDASEVEKEI 118 (608)
T ss_dssp SCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHHHHHTTH
T ss_pred cccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEEecCCccccceeEEeeecccccCCCHHHHHHHH
Confidence 455544 999999999999999999999988 79999999998632 2 235678899999999977654 777665
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.89 E-value=5.3e-10 Score=113.73 Aligned_cols=73 Identities=15% Similarity=0.136 Sum_probs=59.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh----hhcc--ceEecCCcccccc-chhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSR--LTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~----lr~~--i~~V~Qdp~lf~~-Tv~~nl 560 (602)
...+|++++|+|+|||||||+++.|+|+++|++|+|.++|.|+......+ ++++ +.+++|++.+++. |+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 34689999999999999999999999999999999999999987665422 2333 5599999877643 677665
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.88 E-value=1.2e-10 Score=105.61 Aligned_cols=50 Identities=22% Similarity=0.242 Sum_probs=43.9
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
.++++||++.+| ++++|+||||||||||+|+|+|++ |++|+|.++|.++.
T Consensus 22 ~l~~vsl~i~~G-e~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~ 71 (158)
T 1htw_A 22 AEILLKLHTEKA-IMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLV 71 (158)
T ss_dssp HHHHHHHCCSSC-EEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCE
T ss_pred HHhccccccCCC-CEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeee
Confidence 355667777777 999999999999999999999999 99999999997764
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-10 Score=106.39 Aligned_cols=54 Identities=20% Similarity=0.296 Sum_probs=47.5
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
|++++|+|+||||||||+++|+|+++ ++| |.++|.++... ..++++++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~--~~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEV--RQGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEE--ETTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchh--HhhhceEEEEEEec
Confidence 68899999999999999999999999 999 99999887433 34678899999984
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.4e-09 Score=104.44 Aligned_cols=110 Identities=16% Similarity=0.118 Sum_probs=73.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeeccccee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVL 292 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (602)
++++++|+||+||||++..|++.+.+..|+|.+.+.|...- ... .|
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~-------~q------------------------- 144 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR-------EQ------------------------- 144 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH-------HH-------------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH-------HH-------------------------
Confidence 89999999999999999999999999999999877654320 000 00
Q ss_pred eeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEE
Q psy3001 293 YFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILI 372 (602)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~ili 372 (602)
+.. ..+ ..+. +.... +... ...+.+|.+++++...+++++|
T Consensus 145 -------------------------l~~-------~~~---~~~l-~~~~~-~~~~--~p~~l~~~~l~~~~~~~~D~vi 185 (295)
T 1ls1_A 145 -------------------------LRL-------LGE---KVGV-PVLEV-MDGE--SPESIRRRVEEKARLEARDLIL 185 (295)
T ss_dssp -------------------------HHH-------HHH---HHTC-CEEEC-CTTC--CHHHHHHHHHHHHHHHTCCEEE
T ss_pred -------------------------HHH-------hcc---cCCe-EEEEc-CCCC--CHHHHHHHHHHHHHhCCCCEEE
Confidence 000 000 0000 00100 0000 1346678899999889999999
Q ss_pred Eecc-cccCChhHHHHHHHHHHHh
Q psy3001 373 LDEA-TAAIDLETDDLIQSTIRSE 395 (602)
Q Consensus 373 LDEp-ts~LD~~~~~~i~~~l~~~ 395 (602)
+||| ++++|......+....+..
T Consensus 186 iDtpp~~~~d~~~~~~l~~~~~~~ 209 (295)
T 1ls1_A 186 VDTAGRLQIDEPLMGELARLKEVL 209 (295)
T ss_dssp EECCCCSSCCHHHHHHHHHHHHHH
T ss_pred EeCCCCccccHHHHHHHHHHhhhc
Confidence 9999 9999987777776665543
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.86 E-value=1.1e-09 Score=114.81 Aligned_cols=37 Identities=35% Similarity=0.347 Sum_probs=33.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+-+++++.+..+ +.++|+|+||||||||+++|+|..+
T Consensus 146 ~~~~i~lelk~g-~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 146 EKRRLRLELMLI-ADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp CEEEEEEEECCS-CSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred eEeeeeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCCc
Confidence 458999999887 9999999999999999999999853
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.85 E-value=6e-11 Score=118.78 Aligned_cols=38 Identities=13% Similarity=0.103 Sum_probs=31.1
Q ss_pred ccCCcCCCChhhHHHHHHH--HHHhhCCCeEEEecccccCChhH
Q psy3001 343 HFGETVTGNVGQRQLICLA--RALLRKTKILILDEATAAIDLET 384 (602)
Q Consensus 343 ~~~~~lsgs~Gq~Qrl~lA--ral~~~p~iliLDEpts~LD~~~ 384 (602)
.++..+| |||+||+++| +++ +|+|+|+||+++++|+..
T Consensus 130 ~y~~~~s--gGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 130 KYDKSQF--KGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp CEETTHH--HHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred cCccccC--CccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 3445555 6999999998 555 999999999999999864
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-10 Score=111.12 Aligned_cols=62 Identities=16% Similarity=0.169 Sum_probs=43.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC--------hhhhhccceEecCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG--------LHTLRSRLTIIPQD 548 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~--------~~~lr~~i~~V~Qd 548 (602)
++++.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+ ...++.+++||+|+
T Consensus 22 ~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 22 TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSMLD 91 (227)
T ss_dssp EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEEE
T ss_pred EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEEe
Confidence 566666 789999999999999999999999999999999998884332 22346789999985
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-10 Score=105.26 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=50.0
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+++|++++|+|+||||||||+++|+|. ++.|.|.++|.++..... .++.++|++|++. ...|+.+|+
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l 72 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIA 72 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHH
Confidence 4678999999999999999999999998 678999999976643221 1334788888654 233444443
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=98.82 E-value=1.7e-09 Score=110.57 Aligned_cols=52 Identities=27% Similarity=0.323 Sum_probs=36.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-CCCceEEEC-CeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-PADGTIIID-GVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-~~~G~I~i~-g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+||||||||+++|+|... |..|+|.++ |.+.. ...+..+++++|+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~ 269 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHG 269 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTS
T ss_pred CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCC
Confidence 8999999999999999999999999 999999987 65432 1234578888885
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-09 Score=105.81 Aligned_cols=70 Identities=19% Similarity=0.239 Sum_probs=55.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCC-------CCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEP-------ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-------~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.+++|++++|+||||||||||+++|+|.+.+ ..|.+++++.+. .. ++++++++|++.++..|+.+|+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 5899999999999999999999999996655 444778877542 11 3468888898888777999998
Q ss_pred CCC
Q psy3001 561 DPV 563 (602)
Q Consensus 561 ~~~ 563 (602)
...
T Consensus 95 ~~~ 97 (231)
T 4a74_A 95 YVA 97 (231)
T ss_dssp EEE
T ss_pred EEE
Confidence 643
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1.8e-10 Score=120.86 Aligned_cols=39 Identities=23% Similarity=0.344 Sum_probs=36.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+||||||||||+++|+|+++|++|+|.+.+.++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie 206 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIE 206 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccch
Confidence 789999999999999999999999999999999887763
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.79 E-value=3.9e-09 Score=98.97 Aligned_cols=37 Identities=24% Similarity=0.210 Sum_probs=32.6
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 394 (602)
+....|++++.+|+++++| ||++|......+.+.+.+
T Consensus 152 ~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 152 VPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp SCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred cCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 4578899999999999999 999999999988887754
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.4e-10 Score=115.48 Aligned_cols=64 Identities=20% Similarity=0.216 Sum_probs=51.4
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVL 269 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~ 269 (602)
|+++++..++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.........+.+++++|.+
T Consensus 36 l~~~~l~~~~G---vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a 99 (274)
T 2x8a_A 36 FKALGLVTPAG---VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRA 99 (274)
T ss_dssp HHHTTCCCCSE---EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCe---EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHH
Confidence 34444444444 999999999999999999999877 79999998887766667777888888863
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-09 Score=114.24 Aligned_cols=54 Identities=17% Similarity=0.177 Sum_probs=49.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL 255 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~ 255 (602)
.++++||++.+ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 19 ~l~~vsl~i~~--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~ 72 (483)
T 3euj_A 19 GFFARTFDFDE--LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGSTS 72 (483)
T ss_dssp TEEEEEEECCS--SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCCC
T ss_pred cccceEEEEcc--ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCch
Confidence 48899999987 9999999999999999999999999999999999998876543
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.2e-09 Score=110.71 Aligned_cols=66 Identities=14% Similarity=0.180 Sum_probs=51.5
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC--CCCceEEE---CCeecCCCChhhhhccceEecCCccccc-cchhcc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE--PADGTIII---DGVDIRTLGLHTLRSRLTIIPQDPVLFS-GTLRLN 559 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~--~~~G~I~i---~g~~i~~~~~~~lr~~i~~V~Qdp~lf~-~Tv~~n 559 (602)
..+|+++||+|+||||||||+++|+|+++ |++|+|.+ ||... + ...++.++++ |+..++. -|+.+|
T Consensus 77 ~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~ 148 (308)
T 1sq5_A 77 QRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRL 148 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHH
Confidence 47899999999999999999999999998 99999999 88663 2 2345678898 7654432 244443
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.76 E-value=8.4e-09 Score=103.81 Aligned_cols=38 Identities=18% Similarity=0.360 Sum_probs=34.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
++++++|+|||||||+++.|++.+.+..|+|.+.+.|.
T Consensus 105 ~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 105 FVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred eEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 89999999999999999999999999989998866543
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.74 E-value=2e-09 Score=113.93 Aligned_cols=73 Identities=23% Similarity=0.203 Sum_probs=60.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccC--------------------------------------CCCceE
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE--------------------------------------PADGTI 523 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~--------------------------------------~~~G~I 523 (602)
++.++|++.+| +++|+|+||||||||+++|.++.. +.+|++
T Consensus 51 l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~i 129 (415)
T 4aby_A 51 ITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAA 129 (415)
T ss_dssp EEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEEE
T ss_pred eeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceEE
Confidence 45689999999 999999999999999999987764 447889
Q ss_pred EECCeecCCCChhhhhcc-ceEecCCccccccc
Q psy3001 524 IIDGVDIRTLGLHTLRSR-LTIIPQDPVLFSGT 555 (602)
Q Consensus 524 ~i~g~~i~~~~~~~lr~~-i~~V~Qdp~lf~~T 555 (602)
+++|++++.....++.+. +++++|++.++-.+
T Consensus 130 ~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~ 162 (415)
T 4aby_A 130 RLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLS 162 (415)
T ss_dssp EETTEEECHHHHHHHHTTTEEEETTTCTTTTSS
T ss_pred EECCEECCHHHHHHHHhhceEEecCcccccccC
Confidence 999999876666666655 89999998765433
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.69 E-value=7.2e-08 Score=93.90 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=39.1
Q ss_pred hCCCeEEEecccccC--ChhHHHHHHHHHHHh--ccccEEEEeeecccc--------ccc-CCeEEEEeC
Q psy3001 366 RKTKILILDEATAAI--DLETDDLIQSTIRSE--FAHCTVLTIAHRLNT--------IID-SDRVLVLDK 422 (602)
Q Consensus 366 ~~p~iliLDEpts~L--D~~~~~~i~~~l~~~--~~~~tvi~itH~l~~--------i~~-~d~i~~l~~ 422 (602)
.+|+++++|++++.+ |+.........+.+. ..++|+|+++|.... +.+ ||.|+.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 479999999999988 553333333334332 247899999998765 334 899999874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.7e-08 Score=101.22 Aligned_cols=71 Identities=8% Similarity=0.039 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc---cccEEEEe--eeccccccc-CCeEEEEeCceEE
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF---AHCTVLTI--AHRLNTIID-SDRVLVLDKGLVV 426 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~---~~~tvi~i--tH~l~~i~~-~d~i~~l~~G~i~ 426 (602)
+...+.+++++ .+|+++|+| |+++|+.....+.+..+... ...+++++ +|....+.+ ++++..+..+.++
T Consensus 170 ~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giV 245 (296)
T 2px0_A 170 KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYI 245 (296)
T ss_dssp HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEE
T ss_pred HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEE
Confidence 34456667654 899999999 88999877665555443332 22334444 888777766 6665555556665
Q ss_pred e
Q psy3001 427 E 427 (602)
Q Consensus 427 ~ 427 (602)
.
T Consensus 246 l 246 (296)
T 2px0_A 246 F 246 (296)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=9.8e-09 Score=105.26 Aligned_cols=64 Identities=20% Similarity=0.224 Sum_probs=51.1
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-------CChhhhhccceEecCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-------LGLHTLRSRLTIIPQD 548 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-------~~~~~lr~~i~~V~Qd 548 (602)
.+ |++.+|+++||+|+||||||||+++|+|+.+|+.|.|.+.|++... .....+++.+.+++|.
T Consensus 64 ~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~ 134 (347)
T 2obl_A 64 GL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQSTLSKCVLVVTTS 134 (347)
T ss_dssp HH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECT
T ss_pred ee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhhhhhceEEEEECC
Confidence 47 9999999999999999999999999999999999999998865221 1122344556777764
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.67 E-value=5.3e-09 Score=101.29 Aligned_cols=64 Identities=16% Similarity=0.160 Sum_probs=36.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHH-hccCCCCceEEECCeecCCCChh-hhhccceEecCCcccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALF-RIIEPADGTIIIDGVDIRTLGLH-TLRSRLTIIPQDPVLF 552 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~-g~~~~~~G~I~i~g~~i~~~~~~-~lr~~i~~V~Qdp~lf 552 (602)
.+||++++|+++||+||||||||||+++|+ |++++ + .++.++...++. .-+.++.|.++++..|
T Consensus 19 ~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~ 84 (231)
T 3lnc_A 19 PGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARKGEKEGKDYYFVDREEF 84 (231)
T ss_dssp ---CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCTTCCBTTTBEECCHHHH
T ss_pred CCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCccccCCCeEEEecHHHh
Confidence 589999999999999999999999999999 99854 2 333333332221 1123566777777555
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.9e-09 Score=97.80 Aligned_cols=51 Identities=16% Similarity=0.138 Sum_probs=37.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++|+||||||||||+++|+|+++ |.++|.+.........+++++|++|++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~ 52 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT 52 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC
Confidence 589999999999999999999985 667776553322114567899999987
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=6.8e-09 Score=111.00 Aligned_cols=48 Identities=15% Similarity=0.117 Sum_probs=37.6
Q ss_pred eEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEECCeecCC
Q psy3001 204 YKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 204 vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i~g~~~~~ 252 (602)
+++.+.++ +.++|.|.+||||||+++.|.. ++.+..|++.+.+.|.+.
T Consensus 160 v~ldL~~~-pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~ 209 (512)
T 2ius_A 160 VVADLAKM-PHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKM 209 (512)
T ss_dssp EEEEGGGS-CSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSS
T ss_pred EEEEcccC-ceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCch
Confidence 44444444 7799999999999999999876 667777888887777665
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=98.65 E-value=8.8e-09 Score=98.06 Aligned_cols=53 Identities=23% Similarity=0.290 Sum_probs=40.9
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++|+++||+|+||||||||+++|+|+++|+ | ..+++|+||.+.++.+...|+
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~ 71 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPR 71 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGG
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHh
Confidence 5789999999999999999999999999875 3 135666666666655555443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-09 Score=95.54 Aligned_cols=43 Identities=19% Similarity=0.350 Sum_probs=34.5
Q ss_pred eeeEEecceeEEEECCCCCChHHHHH------------HHHhccCCCCceEEECC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTL------------ALFRIIEPADGTIIIDG 527 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~------------~L~g~~~~~~G~I~i~g 527 (602)
+||++++||+++|+|+||||||||++ .+.|++.++.|++.+++
T Consensus 2 vsl~i~~gei~~l~G~nGsGKSTl~~~~~~~~~~~~~d~~~g~~~~~~~~~~~~~ 56 (171)
T 4gp7_A 2 MKLTIPELSLVVLIGSSGSGKSTFAKKHFKPTEVISSDFCRGLMSDDENDQTVTG 56 (171)
T ss_dssp EEEEEESSEEEEEECCTTSCHHHHHHHHSCGGGEEEHHHHHHHHCSSTTCGGGHH
T ss_pred ccccCCCCEEEEEECCCCCCHHHHHHHHccCCeEEccHHHHHHhcCcccchhhHH
Confidence 79999999999999999999999999 55555555555544443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=1.1e-09 Score=105.75 Aligned_cols=97 Identities=23% Similarity=0.182 Sum_probs=68.9
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc---CCCCceEEE--------CCeecCC-CChhhhhccceEecCCcc------ccc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII---EPADGTIII--------DGVDIRT-LGLHTLRSRLTIIPQDPV------LFS 553 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~---~~~~G~I~i--------~g~~i~~-~~~~~lr~~i~~V~Qdp~------lf~ 553 (602)
+.+++|+|++||||||++++|++.+ .+++|.+.. +|.++.. ....++++.+++++|++. ++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 84 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEG 84 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECC
Confidence 4579999999999999999999877 678899877 6766542 334567889999999873 333
Q ss_pred cchhcccCCCCCCcHHHHHHHHHHcCCCccccccccCCCcc
Q psy3001 554 GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHE 594 (602)
Q Consensus 554 ~Tv~~nl~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~ 594 (602)
.++.+++ .++++.+++..+..++++.....+..+.
T Consensus 85 ~~v~~~~------~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 119 (227)
T 1cke_A 85 EDVSGEI------RTQEVANAASQVAAFPRVREALLRRQRA 119 (227)
T ss_dssp EECHHHH------TSHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred eeCchhh------CCHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 3454444 3466777777777777665544443333
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.4e-09 Score=106.59 Aligned_cols=73 Identities=22% Similarity=0.302 Sum_probs=61.9
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhcc--CCCC----ce-EEECCeecCCCChhhhhccceEecCCccccccchh
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRII--EPAD----GT-IIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLR 557 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~--~~~~----G~-I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~ 557 (602)
.++.+++|++++|+|+||||||||++.+++.. +|++ |+ |++++.+.- .++++++++|++.++..++.
T Consensus 124 L~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~~~~v~ 197 (349)
T 1pzn_A 124 LGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLDPDEVL 197 (349)
T ss_dssp HTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCCHHHHG
T ss_pred hcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCCHHHHh
Confidence 46789999999999999999999999999998 6666 67 899986541 25679999999988888999
Q ss_pred cccCCC
Q psy3001 558 LNLDPV 563 (602)
Q Consensus 558 ~nl~~~ 563 (602)
+|+...
T Consensus 198 ~ni~~~ 203 (349)
T 1pzn_A 198 KHIYVA 203 (349)
T ss_dssp GGEEEE
T ss_pred hCEEEE
Confidence 998643
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.7e-09 Score=106.14 Aligned_cols=71 Identities=18% Similarity=0.141 Sum_probs=59.6
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc--------CCCCceEEECCeecCCCC---------------hhhhhccceEe---c
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII--------EPADGTIIIDGVDIRTLG---------------LHTLRSRLTII---P 546 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~--------~~~~G~I~i~g~~i~~~~---------------~~~lr~~i~~V---~ 546 (602)
++++|+|+||||||||++.|+|+. .++.|+|.+||.++...+ ..++++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 578999999999999999999997 789999999999987653 34667789988 7
Q ss_pred CCccc-cccchhcccCCC
Q psy3001 547 QDPVL-FSGTLRLNLDPV 563 (602)
Q Consensus 547 Qdp~l-f~~Tv~~nl~~~ 563 (602)
|++.+ |..+|.+|....
T Consensus 85 q~~~~~~~~~v~E~~~l~ 102 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMA 102 (318)
T ss_dssp HHTSCCCSEEEEEEETTC
T ss_pred hcCCCCCCEEEEeCCCCC
Confidence 88764 677999998653
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=1.2e-07 Score=100.87 Aligned_cols=60 Identities=30% Similarity=0.470 Sum_probs=39.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhccC------------CCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIE------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
-+++|+|++|+|||||++.|+|... +.+|.+.++|+++.-++....++...+.+|....|
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~ 252 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKY 252 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCS
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHH
Confidence 3799999999999999999999853 67899999998776555555555566666655544
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.6e-08 Score=106.20 Aligned_cols=94 Identities=17% Similarity=0.174 Sum_probs=65.8
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCC----hhhhhccceEec---------CCcccc--c-
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG----LHTLRSRLTIIP---------QDPVLF--S- 553 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~----~~~lr~~i~~V~---------Qdp~lf--~- 553 (602)
.+|+.++|+||||||||||+++|+|+++|++|+|.+.|.++.... ..++++++++.+ |||..+ .
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq~pd~i~vgE 244 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQDPDVVMVGE 244 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGGCCSEEEESC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhccCCCeEEEcC
Confidence 678899999999999999999999999999999999988774321 223455676655 999653 2
Q ss_pred ----cchhcccCCC----------CCCcHHHHHHHHHHcCCCcc
Q psy3001 554 ----GTLRLNLDPV----------GESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 554 ----~Tv~~nl~~~----------~~~~~~~i~~al~~~~l~~~ 583 (602)
.|+++++... ...+..+..+.|..+++..+
T Consensus 245 iRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~ 288 (418)
T 1p9r_A 245 IRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPF 288 (418)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHH
T ss_pred cCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHH
Confidence 2666665310 11222344456777777653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.8e-08 Score=94.36 Aligned_cols=85 Identities=16% Similarity=0.227 Sum_probs=64.8
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccC-------------CCCceEEECCeecCCCChhhhhccceEecCCccc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-------------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
.|+...+|+.++|+||||||||||++.|++.++ |..|+ ++|++..-++..+.++.+ .|+.++
T Consensus 12 ~~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fl 86 (197)
T 3ney_A 12 ENLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFL 86 (197)
T ss_dssp ----CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEE
T ss_pred ccCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhh
Confidence 455566899999999999999999999999986 67777 688887777777777664 688899
Q ss_pred cccchhcccCCCCCCcHHHHHHHHHH
Q psy3001 552 FSGTLRLNLDPVGESSDEAIWKALEL 577 (602)
Q Consensus 552 f~~Tv~~nl~~~~~~~~~~i~~al~~ 577 (602)
+..++..|.-. .+.+.+.++++.
T Consensus 87 e~~~~~~n~YG---t~~~~v~~~l~~ 109 (197)
T 3ney_A 87 EFGSYQGNMFG---TKFETVHQIHKQ 109 (197)
T ss_dssp EEEEETTEEEE---EEHHHHHHHHHT
T ss_pred hhhhhhceecc---cchhhHHHHHhc
Confidence 99999988522 345556666653
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.58 E-value=1.4e-08 Score=94.34 Aligned_cols=80 Identities=16% Similarity=0.129 Sum_probs=52.8
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCC-CCceEEE----------CCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEP-ADGTIII----------DGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~-~~G~I~i----------~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
+|++++|+||||||||||+++|++.+++ ..|.|.. +|.+....+...+++ .+.|+.+++..++..|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~---~~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQ---DISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHH---HHHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHH---HHHcCCceEEEEEcCc
Confidence 5889999999999999999999999864 4455543 333333334444433 2456667777777777
Q ss_pred cCCCCCCcHHHHHHHHH
Q psy3001 560 LDPVGESSDEAIWKALE 576 (602)
Q Consensus 560 l~~~~~~~~~~i~~al~ 576 (602)
... .+.+.++++++
T Consensus 81 ~yg---~~~~~i~~~l~ 94 (180)
T 1kgd_A 81 MYG---TKLETIRKIHE 94 (180)
T ss_dssp EEE---EEHHHHHHHHH
T ss_pred ccc---ccHHHHHHHHH
Confidence 421 23455666665
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.57 E-value=2e-08 Score=101.27 Aligned_cols=58 Identities=17% Similarity=0.070 Sum_probs=39.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+++|+|+..|++|+|.+ +|.++.........+.+++++|.|.
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCS
T ss_pred CeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 889999999999999999999999999999999 8988876542211246899999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.54 E-value=6.5e-07 Score=91.88 Aligned_cols=74 Identities=16% Similarity=0.161 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhC--CCeEEEecccccCC----------h---hHHHHHHHHHHHh-----ccccEEEEeeecccc-----
Q psy3001 356 QLICLARALLRK--TKILILDEATAAID----------L---ETDDLIQSTIRSE-----FAHCTVLTIAHRLNT----- 410 (602)
Q Consensus 356 Qrl~lAral~~~--p~iliLDEpts~LD----------~---~~~~~i~~~l~~~-----~~~~tvi~itH~l~~----- 410 (602)
|.+.++++++++ |+++|+||+++.+. + ...+.+.+.++++ ..++|||+++|-...
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445677877755 99999999999882 2 1122334444443 237899999996541
Q ss_pred -----------ccc-CCeEEEEeCceEEeec
Q psy3001 411 -----------IID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 411 -----------i~~-~d~i~~l~~G~i~~~g 429 (602)
+.. ||.++.++.+++...|
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g 236 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDG 236 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecC
Confidence 334 8888888887766544
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.2e-08 Score=93.65 Aligned_cols=60 Identities=20% Similarity=0.122 Sum_probs=46.0
Q ss_pred EEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchh
Q psy3001 207 RYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLAT 271 (602)
Q Consensus 207 ~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~ 271 (602)
+..+| ++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..
T Consensus 3 ~m~~g-~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 62 (205)
T 3tr0_A 3 AMNKA-NLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETR 62 (205)
T ss_dssp --CCC-CEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHH
T ss_pred cCCCC-cEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHH
Confidence 33445 8999999999999999999999974 577887776655444446778999997543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=1.4e-07 Score=88.87 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=30.5
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHH
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRS 394 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~ 394 (602)
...|++++.+|+++++| ||++|......+.+.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 46699999999999999 999999998888877754
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-08 Score=106.04 Aligned_cols=46 Identities=22% Similarity=0.357 Sum_probs=42.7
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCee
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~ 529 (602)
.+++.+++|+.++|+|+|||||||++++|+|+++|++|.|.++|.+
T Consensus 252 ~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 252 YLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp HHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred HHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 4678889999999999999999999999999999999999998854
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=5.7e-07 Score=96.13 Aligned_cols=57 Identities=11% Similarity=0.082 Sum_probs=38.3
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
.|.+....+...+.+++++|+......-......++.+.+++ .++.+|++.++.+..
T Consensus 88 ~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 88 FLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 477888888889999998887765544333444566666654 467888888887654
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.2e-08 Score=99.56 Aligned_cols=75 Identities=17% Similarity=0.150 Sum_probs=61.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc-cccc-cchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS-GTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp-~lf~-~Tv~~nl~ 561 (602)
.+++++++| ++|+||||||||||+++|+|...+ |.|.++|.++......+.++++++++|++ ..+. -++.+|++
T Consensus 38 ~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid 113 (274)
T 2x8a_A 38 ALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVD 113 (274)
T ss_dssp HTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEEETCT
T ss_pred HcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEeeehhh
Confidence 478888889 999999999999999999999876 79999998886665566677899999986 3332 36677876
Q ss_pred C
Q psy3001 562 P 562 (602)
Q Consensus 562 ~ 562 (602)
.
T Consensus 114 ~ 114 (274)
T 2x8a_A 114 A 114 (274)
T ss_dssp T
T ss_pred h
Confidence 4
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.48 E-value=4.8e-08 Score=99.50 Aligned_cols=77 Identities=17% Similarity=0.199 Sum_probs=59.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhcc-----------------------------------------------
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII----------------------------------------------- 516 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~----------------------------------------------- 516 (602)
.+++++.+| ..+|+|+||||||||+++|..++
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 367888888 99999999999999999998543
Q ss_pred ---CCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 517 ---EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 517 ---~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
.+.+|+++++|.+++......+...+++.||+..++ .+++.+++.
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~ 144 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVN 144 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHT
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHh
Confidence 334578899998875444555666789999988765 667776664
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-08 Score=94.30 Aligned_cols=61 Identities=13% Similarity=0.145 Sum_probs=45.7
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
++.++|++++|+|+||||||||+++|++.+ |.+.++|.++... ....+..+++++|++..+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 445689999999999999999999999987 8999999776421 112233689999987554
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.47 E-value=5.7e-09 Score=100.18 Aligned_cols=55 Identities=16% Similarity=0.141 Sum_probs=36.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChH--------HHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH--------TLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~--------~~~~~i~~v~Q 267 (602)
++++|+||||||||||+++|+|++.|++|+|.++|.++...++. .++..+++++|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~~ 90 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHGKLKAGVCYSML 90 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGGGBCSSEEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhhHhhcCcEEEEE
Confidence 67999999999999999999999999999999999887443322 23455666665
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.45 E-value=8e-08 Score=90.93 Aligned_cols=63 Identities=13% Similarity=0.173 Sum_probs=42.4
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
+++.+|++++|+|+|||||||++++|++.+.|+.| +.+. ...... ....+.+++|++|++..|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i~-~~~~~~-~~~~~~~~~~~~~~~~~~ 63 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSIS-MTTRQM-REGEVDGVDYFFKTRDAF 63 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCCC-EECSCC-CTTCCBTTTBEECCHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eecc-cccCCC-CCCccCCCceEEcCHHHH
Confidence 35788999999999999999999999999977655 2221 111111 112234589999988544
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.44 E-value=2.3e-07 Score=99.03 Aligned_cols=172 Identities=15% Similarity=0.204 Sum_probs=97.8
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCc-eEEECCeecCCCChHHHhhcc-----ceecccchhhh
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRL-----TIIPQVLATIF 273 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~i~g~~~~~~~~~~~~~~i-----~~v~Q~~~~~~ 273 (602)
.++++...+.+| +++.|.|++|+|||||+..+++...+..| .|.+-+. +++...+.+++ ++-++.
T Consensus 192 ~LD~~~gGl~~G-~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~----- 262 (454)
T 2r6a_A 192 ELDRMTSGFQRS-DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN----- 262 (454)
T ss_dssp HHHHHHSSBCTT-CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH-----
T ss_pred HHHhhcCCCCCC-CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH-----
Confidence 456666556666 99999999999999999999998776545 5555332 23444443332 111110
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+. ..... ...+.......+.+ ...++.-.....++ .+
T Consensus 263 --------------------------------l~----~g~l~--~~~~~~~~~a~~~l---~~~~l~i~d~~~~s--~~ 299 (454)
T 2r6a_A 263 --------------------------------LR----TGKLT--PEDWGKLTMAMGSL---SNAGIYIDDTPSIR--VS 299 (454)
T ss_dssp --------------------------------HH----TSCCC--HHHHHHHHHHHHHH---HSSCEEEECCTTCC--HH
T ss_pred --------------------------------Hh----cCCCC--HHHHHHHHHHHHHH---hcCCEEEECCCCCC--HH
Confidence 00 00000 01111222222222 22222222222344 46
Q ss_pred hHHHHHHHHHHh--hCCCeEEEecccccCChh--------HHHHHHHHHHHhc--cccEEEEeee---------c--cc-
Q psy3001 354 QRQLICLARALL--RKTKILILDEATAAIDLE--------TDDLIQSTIRSEF--AHCTVLTIAH---------R--LN- 409 (602)
Q Consensus 354 q~Qrl~lAral~--~~p~iliLDEpts~LD~~--------~~~~i~~~l~~~~--~~~tvi~itH---------~--l~- 409 (602)
|.+ +.+|.+. .+|+++|+|+++...++. ....+...|+.+. .+++||+++| + +.
T Consensus 300 ~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~l 377 (454)
T 2r6a_A 300 DIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMM 377 (454)
T ss_dssp HHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCT
T ss_pred HHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcH
Confidence 654 6677776 579999999999987532 2234555566553 3689999999 2 32
Q ss_pred -------cccc-CCeEEEEeCceE
Q psy3001 410 -------TIID-SDRVLVLDKGLV 425 (602)
Q Consensus 410 -------~i~~-~d~i~~l~~G~i 425 (602)
.+.. ||.|++|..++.
T Consensus 378 sdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 378 SDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhhccchhHhhCCEEEEEecccc
Confidence 3455 899999986653
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.8e-09 Score=112.10 Aligned_cols=62 Identities=11% Similarity=0.012 Sum_probs=51.7
Q ss_pred CC--CeEEEecccccCChhHHHHHHHHHHHh-cc-ccEEEEeeeccccccc-CCeEE-EEeCc-eEEeecC
Q psy3001 367 KT--KILILDEATAAIDLETDDLIQSTIRSE-FA-HCTVLTIAHRLNTIID-SDRVL-VLDKG-LVVEFDS 430 (602)
Q Consensus 367 ~p--~iliLDEpts~LD~~~~~~i~~~l~~~-~~-~~tvi~itH~l~~i~~-~d~i~-~l~~G-~i~~~g~ 430 (602)
+| +++++|||+..+|+...+..++.++.. .. +.|+ ++|.+..+.. ||++. +|++| +++..++
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~ 207 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGD 207 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSC
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCC
Confidence 88 999999999999999988888888776 44 4564 3999999988 99998 99999 8775554
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.4e-08 Score=88.95 Aligned_cols=98 Identities=18% Similarity=0.192 Sum_probs=63.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe--ecCCCCh----hhhhccceEecCCccc-cc---
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV--DIRTLGL----HTLRSRLTIIPQDPVL-FS--- 553 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~--~i~~~~~----~~lr~~i~~V~Qdp~l-f~--- 553 (602)
.+++.+.+| ..+|+|+||||||||+++|.+++.+..|.....+. ++-.... ...+..|.+++|+|.- |+
T Consensus 19 ~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~~ 97 (182)
T 3kta_A 19 KVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDE 97 (182)
T ss_dssp CEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSSS
T ss_pred cEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccCC
Confidence 577888888 89999999999999999999999887776433331 1111110 0234579999998731 11
Q ss_pred --cchhcccC--------CC-CCCcHHHHHHHHHHcCCCc
Q psy3001 554 --GTLRLNLD--------PV-GESSDEAIWKALELAHLNT 582 (602)
Q Consensus 554 --~Tv~~nl~--------~~-~~~~~~~i~~al~~~~l~~ 582 (602)
-+|+..+. .. ...+.+++.+.++.+++..
T Consensus 98 ~~~~i~r~~~~~~~~~~~i~g~~~~~~~~~~~l~~~~l~~ 137 (182)
T 3kta_A 98 DEVVIRRRVYPDGRSSYWLNGRRATRSEILDILTAAMISP 137 (182)
T ss_dssp SEEEEEEEECTTSCEEEEETTEEECHHHHHHHHHHTTCCT
T ss_pred cEEEEEEEEEeCCcEEEEECCeEcCHHHHHHHHHHcCCCC
Confidence 12222211 11 1235678999999988754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.42 E-value=4.3e-08 Score=91.60 Aligned_cols=59 Identities=22% Similarity=0.072 Sum_probs=44.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLN 559 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~n 559 (602)
|++++|+|+||||||||+++|++ +.+|++.++|.++... ..+++++|.+..+ ..|+++|
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~ 61 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKN 61 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHH
Confidence 67899999999999999999997 5679999998665432 2467888876332 2355444
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.39 E-value=8.6e-08 Score=96.59 Aligned_cols=57 Identities=18% Similarity=0.045 Sum_probs=41.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+|+|. +.+|..|+|.+ +|.++.........+.+++++|.|.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg 225 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPG 225 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcC
Confidence 789999999999999999999 99999999999 8988765432111236899999864
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.5e-08 Score=99.11 Aligned_cols=66 Identities=11% Similarity=0.220 Sum_probs=51.0
Q ss_pred cceeEEEECCCCCChHHHHHHHH---hccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhccc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNL 560 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~---g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl 560 (602)
++++++|+|+||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+.+++|++.++.. ++.+++
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l 95 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLM 95 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 46889999999999999999999 999999999988875421 2344567778888766543 555544
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=5.5e-09 Score=104.95 Aligned_cols=110 Identities=20% Similarity=0.185 Sum_probs=74.9
Q ss_pred HHHHHHHHhccccEEEEeeeccccccc-CCeEEEEeCceEEeec-Ch-hHHhhcchhHHHHHHHhhhhhHHHHHHHhhhh
Q psy3001 387 LIQSTIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD-SP-SVLMKNKASIFYSMAKDAGLAWLAVRLETVGN 463 (602)
Q Consensus 387 ~i~~~l~~~~~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g-~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 463 (602)
.+.+.++++. .|+|.+.|+++.+.. +|++..+.+|++++.+ ++ +++... .
T Consensus 26 ~l~~~l~~l~--~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~-------~------------------ 78 (295)
T 1ls1_A 26 DLKATLREIR--RALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILAT-------V------------------ 78 (295)
T ss_dssp HHHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHH-------H------------------
T ss_pred HHHHHHHHHH--HHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHH-------H------------------
Confidence 3444444443 589999999999988 8998888877765321 21 222110 0
Q ss_pred hHHHHHHHHHHHhcccccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 464 LITFSAALLAVLSKETLNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.......+ .... ..++|+ +|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..
T Consensus 79 ---~~~l~~~~-~~~~---~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 79 ---YEALKEAL-GGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp ---HHHHHHHT-TSSC---CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ---HHHHHHHH-CCCC---ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 00000111 1111 246777 899999999999999999999999999999999998877654
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=98.37 E-value=9.7e-08 Score=92.31 Aligned_cols=38 Identities=13% Similarity=0.170 Sum_probs=22.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHh-cccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALF-RIIEP 238 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~-g~~~~ 238 (602)
--+++||+..+| ++++|+||||||||||+++|+ |++++
T Consensus 16 ~~~~~sl~v~~G-~ii~l~Gp~GsGKSTl~~~L~~~~~~~ 54 (231)
T 3lnc_A 16 TQGPGSMLKSVG-VILVLSSPSGCGKTTVANKLLEKQKNN 54 (231)
T ss_dssp ------CCEECC-CEEEEECSCC----CHHHHHHC----C
T ss_pred ccCCCCcccCCC-CEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 356788888888 999999999999999999999 99843
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=98.33 E-value=7e-08 Score=91.53 Aligned_cols=40 Identities=28% Similarity=0.331 Sum_probs=29.8
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhcc-----CCCCceEEE
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRII-----EPADGTIII 525 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~-----~~~~G~I~i 525 (602)
+|.+.+|.+++|+|+||||||||++.|+|.. .|+.|++.+
T Consensus 20 ~~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~ 64 (210)
T 1pui_A 20 HLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64 (210)
T ss_dssp GSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CC
T ss_pred HCCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCcccee
Confidence 3889999999999999999999999999998 788887654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.32 E-value=9.3e-08 Score=93.79 Aligned_cols=56 Identities=29% Similarity=0.304 Sum_probs=50.7
Q ss_pred ceEEEEeccCCChhHHHHHHh---cccCCCCceEE--------ECCeecC-CCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF---RIIEPADGTII--------IDGVDIR-TLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~--------i~g~~~~-~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|+ |+..+++|.+. .+|.++. ......+++.+++++|.
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 899999999999999999999 99999999999 8998884 45677889999999985
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=2.7e-07 Score=93.29 Aligned_cols=51 Identities=18% Similarity=0.324 Sum_probs=42.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC--CCCceEEE---CCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE--PADGTIII---DGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
+++||+|+||||||||+++|+|++. |++|+|.+ ||.... ...++.++++ |.
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~ 136 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHP----NQVLKERGLM-KK 136 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC----HHHHHHHTCT-TC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccCc----HHHHHhCCEe-ec
Confidence 8999999999999999999999998 99999999 887642 2345667777 53
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=9.7e-08 Score=90.13 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=40.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceE--EECCeecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI--IIDGVDIRT 532 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I--~i~g~~i~~ 532 (602)
.++...+|++++|+|++||||||++++|++.+. ..|.+ .+||.++..
T Consensus 18 ~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 18 QRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH 66 (200)
T ss_dssp HHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT
T ss_pred HHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh
Confidence 345557899999999999999999999999997 78988 999877753
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-07 Score=95.83 Aligned_cols=64 Identities=13% Similarity=0.045 Sum_probs=50.0
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEEECCeecCCCChhhhhccceEecCCc
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
..+++.+++|+.++|+|+||||||||++.|+|...|++| .|.+.+.+ .+..++++++..+.|+.
T Consensus 26 d~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~ 90 (296)
T 1cr0_A 26 NDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRV 90 (296)
T ss_dssp HHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTC
T ss_pred HHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCC
Confidence 357789999999999999999999999999999999888 77654433 24455666665555544
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=3.4e-07 Score=102.18 Aligned_cols=104 Identities=23% Similarity=0.168 Sum_probs=79.3
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCC--CCceEEECCeecCCCChhhhhccceEecCCccccccchhcccC--
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNLD-- 561 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~--~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl~-- 561 (602)
++++.++.+++|+|++|+|||||++.|++...+ ..|+| .+|..+......+.++.+++.+|.+.++..+++.|+.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 456788999999999999999999999987665 68998 7888888888888888999999999988888888874
Q ss_pred CCCCCcHHHHHHHHHHcCCCccccccccC
Q psy3001 562 PVGESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 562 ~~~~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|+...-..++..+++.+++.-++-....+
T Consensus 82 pG~~~f~~~~~~~l~~ad~~ilVvD~~~g 110 (665)
T 2dy1_A 82 PGYGDFVGEIRGALEAADAALVAVSAEAG 110 (665)
T ss_dssp CCSGGGHHHHHHHHHHCSEEEEEEETTTC
T ss_pred CCccchHHHHHHHHhhcCcEEEEEcCCcc
Confidence 33222236677888877765544333333
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.26 E-value=1e-08 Score=102.28 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=41.7
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++|+||||||||||+++|++... .|.|.+++.++........++.+..++|.
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 127 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 127 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHH
T ss_pred EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999999885 78999988776544444455666777775
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=8.1e-08 Score=92.87 Aligned_cols=64 Identities=16% Similarity=0.107 Sum_probs=49.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC------Chhh----hhccceEecCCccccc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL------GLHT----LRSRLTIIPQDPVLFS 553 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~------~~~~----lr~~i~~V~Qdp~lf~ 553 (602)
....++|+.++|.|+|||||||++++|+|. .|+|.+.+.+.... ...+ .++++++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345578999999999999999999999998 78999998876432 1111 2457899999886653
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.24 E-value=2.8e-07 Score=89.45 Aligned_cols=61 Identities=15% Similarity=0.147 Sum_probs=45.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh--ccCC-----CCceEEECCeecCC-CChhhhhccceEecCC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR--IIEP-----ADGTIIIDGVDIRT-LGLHTLRSRLTIIPQD 548 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~-----~~G~I~i~g~~i~~-~~~~~lr~~i~~V~Qd 548 (602)
.+++|++++|+|+||||||||++.+++ ..+| ..|.+++++.+.-. ....++++++++.+|+
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~ 88 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD 88 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH
Confidence 478999999999999999999999999 5554 57889998865211 1123345568887764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.24 E-value=4.4e-07 Score=95.07 Aligned_cols=71 Identities=17% Similarity=0.065 Sum_probs=42.5
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
.+++|+| +|+|+||||||||+++|+|...+..| .+|.++...+ ...++.+++++|++.++ .-||++|+.
T Consensus 28 ~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~i~~v~q~~~~~~~Ltv~Dt~g 97 (418)
T 2qag_C 28 RGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQSKVLIKEGGVQLLLTIVDTPG 97 (418)
T ss_dssp -CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEECC------CEEEEEEECC-
T ss_pred cCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeeeEEEEEecCCcccceeeeechh
Confidence 3566665 99999999999999999999886665 2343332211 11245699999998766 458999986
Q ss_pred CC
Q psy3001 562 PV 563 (602)
Q Consensus 562 ~~ 563 (602)
..
T Consensus 98 ~~ 99 (418)
T 2qag_C 98 FG 99 (418)
T ss_dssp --
T ss_pred hh
Confidence 54
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=4.2e-07 Score=91.48 Aligned_cols=69 Identities=20% Similarity=0.122 Sum_probs=33.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhc-cCCCCceEEECCeecCCCChhhhhccceEecCCcccc-ccchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI-IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF-SGTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~-~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf-~~Tv~~nl~ 561 (602)
+++|+| +|+|+||+|||||++.|+|. ..|++| |.++|.++... .. ++.+++++|++..+ .-||+++..
T Consensus 16 ~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t--~~-~~~~~~~~q~~~~~~~ltv~Dt~g 85 (301)
T 2qnr_A 16 GFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT--VQ-IEASTVEIEERGVKLRLTVVDTPG 85 (301)
T ss_dssp --CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC---CCEEEEEEEEC-
T ss_pred CCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc--ce-EeeEEEEecCCCcccCcchhhhhh
Confidence 466665 99999999999999999998 889999 88888776431 11 35689999987543 347887765
Q ss_pred C
Q psy3001 562 P 562 (602)
Q Consensus 562 ~ 562 (602)
.
T Consensus 86 ~ 86 (301)
T 2qnr_A 86 Y 86 (301)
T ss_dssp -
T ss_pred h
Confidence 4
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.7e-07 Score=93.97 Aligned_cols=57 Identities=18% Similarity=0.166 Sum_probs=31.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE---CCeecCCCChHHHhhccceecccch
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII---DGVDIRTLGLHTLRSRLTIIPQVLA 270 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i---~g~~~~~~~~~~~~~~i~~v~Q~~~ 270 (602)
++++|+|+||||||||+|+|.|...|..|+|.+ +|..++... ..++..+++++|.|.
T Consensus 174 ~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg 233 (307)
T 1t9h_A 174 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPG 233 (307)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCS
T ss_pred CEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCC
Confidence 899999999999999999999999999999998 787765432 112222788888754
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.22 E-value=7.5e-08 Score=104.46 Aligned_cols=88 Identities=19% Similarity=0.279 Sum_probs=60.8
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEE-ECCeecCC-------CCh---hhhhccceEecCCcccccc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TII-IDGVDIRT-------LGL---HTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~-i~g~~i~~-------~~~---~~lr~~i~~V~Qdp~lf~~ 554 (602)
..+.+|++++|+|+||||||||+++|+|.+.|++| ++. +||.++.. .+. ...++++++++|+..
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l~---- 439 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEIT---- 439 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHHH----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHHH----
Confidence 35778999999999999999999999999999987 785 99876632 111 123456899988742
Q ss_pred chhcccC---CCC--CCcHHHHHHHHHHcC
Q psy3001 555 TLRLNLD---PVG--ESSDEAIWKALELAH 579 (602)
Q Consensus 555 Tv~~nl~---~~~--~~~~~~i~~al~~~~ 579 (602)
..+|+. ... ...++++.++++.++
T Consensus 440 -~~~~ivi~~~~~~~~~~r~~~r~lL~~~g 468 (552)
T 3cr8_A 440 -KNRGIAICAPIAPYRQTRRDVRAMIEAVG 468 (552)
T ss_dssp -HTTCEEEECCCCCCHHHHHHHHHHHHTTS
T ss_pred -hcCCEEEEecCCccHHHHHHHHHHHHHcC
Confidence 233321 111 123456777777766
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-08 Score=99.30 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=41.0
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++|+||||||||||++++++... .|.+.+++.++........++.+..++|.
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~ 103 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 103 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHH
Confidence 89999999999999999999885 78999988766544444445566666664
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.21 E-value=4.6e-06 Score=88.75 Aligned_cols=61 Identities=16% Similarity=0.104 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccc----------cCChhHHHHHHHHHHHh-----ccccEEEEeeecccccc
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATA----------AIDLETDDLIQSTIRSE-----FAHCTVLTIAHRLNTII 412 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts----------~LD~~~~~~i~~~l~~~-----~~~~tvi~itH~l~~i~ 412 (602)
+++++|-.+++|....|.+|++||+.+ +.|+.....+.+.+... ..+..||.+||+++.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 478888999999999999999999954 44555444454554433 23578999999986653
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.20 E-value=5.4e-07 Score=99.78 Aligned_cols=62 Identities=19% Similarity=0.246 Sum_probs=46.5
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCC-ceEEECCeecCCCChHHHhhccceeccc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~-G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++++....+ +.++|+||||+|||||+++|+++.++.. |.+.+++.+..... ..++++|+.
T Consensus 50 l~~l~~~i~~g-~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~-----p~i~~~p~g 112 (604)
T 3k1j_A 50 VEVIKTAANQK-RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM-----PRIKTVPAC 112 (604)
T ss_dssp HHHHHHHHHTT-CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS-----CEEEEEETT
T ss_pred HhhccccccCC-CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC-----CcEEEEecc
Confidence 34455555555 7899999999999999999999999887 78888776655432 346666654
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=2.5e-07 Score=95.12 Aligned_cols=59 Identities=22% Similarity=0.164 Sum_probs=43.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCC-CceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPA-DGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~-~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+...+|+.++|+||||||||||+++|+|+++|+ .|.|...+.++.. . .+...++++|.+
T Consensus 118 l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~-~---~~~~~~~v~q~~ 177 (356)
T 3jvv_A 118 VSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF-V---HESKKCLVNQRE 177 (356)
T ss_dssp HHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-C---CCCSSSEEEEEE
T ss_pred HHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-h---hhccccceeeee
Confidence 345678899999999999999999999999997 5666554433322 1 234567777755
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.19 E-value=8.4e-07 Score=83.62 Aligned_cols=38 Identities=34% Similarity=0.646 Sum_probs=33.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceE--EECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTI--IIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I--~i~g~~~~ 251 (602)
++++|+|+|||||||++++|++.+. ..|.+ .++|.++.
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 8999999999999999999999998 77888 88876553
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=4.8e-08 Score=100.07 Aligned_cols=67 Identities=18% Similarity=0.223 Sum_probs=50.0
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc----CCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~----~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
+.++|+||||+|||||+++++|.+ .+.+|++..++.++........+..|.+|+|.+.++. ++.+++
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~~~~v~~iDE~~~l~~-~~~e~L 122 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNK-AVEELL 122 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCCTTCEEEEETGGGCCH-HHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHccCCCEEEEcchhhcCH-HHHHHH
Confidence 679999999999999999999998 6778888777666543211112457999999877654 665554
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2e-06 Score=81.31 Aligned_cols=67 Identities=13% Similarity=0.163 Sum_probs=42.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc--cc-CCeEEEEe
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI--ID-SDRVLVLD 421 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i--~~-~d~i~~l~ 421 (602)
.|+.+|..+++.+..+|+.+-.+ ++.++|.....+.+.+... .+.++|+-+|.+.+. .. ||.+++++
T Consensus 62 ~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 62 QGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ----CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred CccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 48889999999888887654332 3455666666666655443 245788888887664 34 89998886
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.09 E-value=7.8e-07 Score=90.09 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=54.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh----hhh-----hccceEe-cCCcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL----HTL-----RSRLTII-PQDPV 550 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~----~~l-----r~~i~~V-~Qdp~ 550 (602)
.++|++.+|++++|+|+||+||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|.+.
T Consensus 97 ~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 97 RIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp CCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred CccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 5788889999999999999999999999999999999999998877654321 222 5678999 67543
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=9.7e-07 Score=99.33 Aligned_cols=62 Identities=19% Similarity=0.197 Sum_probs=42.8
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccC-CCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
++++. |++++|+||||||||||+|+++|+.. ++.|.+.- +.+..+++++| +|+. ++.+|+..
T Consensus 571 disl~-g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a~~~~i~~v~~---i~~~~~~~d~l~~ 634 (765)
T 1ewq_A 571 DLEMA-HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------AEEAHLPLFDG---IYTRIGASDDLAG 634 (765)
T ss_dssp EEEES-SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------SSEEEECCCSE---EEEECCC------
T ss_pred eccCC-CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------hhccceeeHHH---hhccCCHHHHHHh
Confidence 44444 99999999999999999999999874 67887531 12456888887 5554 77777754
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5.5e-06 Score=85.44 Aligned_cols=38 Identities=37% Similarity=0.487 Sum_probs=31.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-----------CCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-----------PADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-----------~~~G~I~i~g~~~ 250 (602)
..++|+|++|||||||++.|+|... |..|.|.++|.++
T Consensus 180 ~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v 228 (364)
T 2qtf_A 180 PSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKI 228 (364)
T ss_dssp CEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEE
Confidence 5699999999999999999999765 5678888888654
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.3e-06 Score=93.30 Aligned_cols=55 Identities=27% Similarity=0.372 Sum_probs=48.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
..++|+|++|+|||||++.|.+...+ ..|+| .+|..+.+....+.++.+++.+|.
T Consensus 10 ~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~ 66 (665)
T 2dy1_A 10 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGV 66 (665)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEE
T ss_pred cEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecc
Confidence 77999999999999999999987765 67888 788888888888888888888874
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.07 E-value=1.2e-06 Score=87.48 Aligned_cols=55 Identities=15% Similarity=0.198 Sum_probs=44.9
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++.+|||+|++|||||||++.|.+++++. | . . ++.+.+|+||+++|+.++++|+
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l 83 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKL 83 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHH
Confidence 457789999999999999999999999763 2 0 0 3345666999999999998886
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=9.7e-07 Score=92.01 Aligned_cols=60 Identities=22% Similarity=0.240 Sum_probs=44.0
Q ss_pred EEecceeEEEECCCCCChHHHHHH--HHhccCCCCc-----eEEECCeecC-CCChhhhhccceEecC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLA--LFRIIEPADG-----TIIIDGVDIR-TLGLHTLRSRLTIIPQ 547 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~--L~g~~~~~~G-----~I~i~g~~i~-~~~~~~lr~~i~~V~Q 547 (602)
-+.+|++++|+|++|||||||++. +.+..+++.| .+++++.+.- ......+++++++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH
Confidence 578999999999999999999994 4577766444 7889987531 1112334567888776
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.05 E-value=6e-07 Score=86.34 Aligned_cols=59 Identities=10% Similarity=0.146 Sum_probs=44.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhh---ccceEecCCc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR---SRLTIIPQDP 549 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr---~~i~~V~Qdp 549 (602)
.+++|+.++|+|+||||||||++.+++...++.|.+.+.+.+. +..+++ ..+++.+|+.
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~ 80 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEY 80 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGG
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHH
Confidence 5789999999999999999999999998888888888766443 222222 2466666643
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=98.05 E-value=6.6e-07 Score=96.37 Aligned_cols=37 Identities=24% Similarity=0.341 Sum_probs=34.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
+.++|+|+|||||||++++|+|+++|++|.|.++|.+
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~ 297 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTR 297 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcc
Confidence 6799999999999999999999999999999998865
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.5e-06 Score=82.55 Aligned_cols=29 Identities=24% Similarity=0.430 Sum_probs=27.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
++|+.++|+||||||||||++.|++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 47899999999999999999999999976
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.9e-06 Score=81.19 Aligned_cols=51 Identities=14% Similarity=0.138 Sum_probs=40.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
++++|+|+|||||||++++|++.+ |.+.+++.++... ....+...++++|+
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~ 80 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTD 80 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCC
Confidence 899999999999999999999987 8999998776531 11223356777775
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=2.9e-06 Score=80.25 Aligned_cols=44 Identities=27% Similarity=0.382 Sum_probs=37.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~ 554 (602)
++.+|++++|+|++||||||+++.|.+.++ ++.+++||++++++
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 467789999999999999999999999874 37788888877765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.01 E-value=5.8e-07 Score=89.44 Aligned_cols=74 Identities=19% Similarity=0.147 Sum_probs=57.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-ccc-cchhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFS-GTLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl~ 561 (602)
.+++++++| ++|+||||||||||+++|++..+ .|.|.+++.++........++++++++|++. .+. -++.+|++
T Consensus 67 ~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid 142 (278)
T 1iy2_A 67 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 142 (278)
T ss_dssp HTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHH
T ss_pred HcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhH
Confidence 478888888 99999999999999999999985 7999999887755544455667888999874 332 25666663
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.00 E-value=2e-06 Score=81.17 Aligned_cols=46 Identities=17% Similarity=0.239 Sum_probs=39.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~ 533 (602)
...+|++++|+|++||||||+++.|.+.+++..|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3567899999999999999999999999988899998876655443
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.00 E-value=7.3e-06 Score=83.83 Aligned_cols=52 Identities=21% Similarity=0.309 Sum_probs=38.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceE-EECCeecCCCChHHHhhccceecc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQ 267 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I-~i~g~~~~~~~~~~~~~~i~~v~Q 267 (602)
+++.|.||+|||||||+..+++...+..|.+ ++++.... . ..+.+++++.+|
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~ 114 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLK 114 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGG
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchh
Confidence 8999999999999999999999988877876 55554322 1 224455666555
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=6.3e-07 Score=87.85 Aligned_cols=73 Identities=18% Similarity=0.127 Sum_probs=56.6
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-ccc-cchhccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFS-GTLRLNL 560 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~-~Tv~~nl 560 (602)
.+++++++| +.|+||||||||||+++|++..+ .|.+.++|.++........++++++++|++. .+. -++.+|+
T Consensus 43 ~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Dei 117 (254)
T 1ixz_A 43 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEI 117 (254)
T ss_dssp HTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETH
T ss_pred HcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhh
Confidence 477888888 99999999999999999999985 7999999877755444455667888888763 232 2455666
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=2.4e-06 Score=78.42 Aligned_cols=54 Identities=15% Similarity=0.164 Sum_probs=40.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhc-cceEecCCc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQDP 549 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~-~i~~V~Qdp 549 (602)
.+|++++|+|++||||||++++|++.+ |.+.+++.++.. ...+++ .+++.+|++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~ 60 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDD 60 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCcc
Confidence 358899999999999999999999976 889999876642 112222 356666653
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=97.98 E-value=1.7e-06 Score=80.75 Aligned_cols=38 Identities=34% Similarity=0.470 Sum_probs=33.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC-----------CCceEEECCeecC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP-----------ADGTIIIDGVDIR 531 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~-----------~~G~I~i~g~~i~ 531 (602)
+++|+|+||||||||++.++|...+ ++|+|.++|+++.
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~ 79 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIK 79 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEE
Confidence 6899999999999999999998765 5789999997653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.97 E-value=3e-06 Score=79.15 Aligned_cols=48 Identities=19% Similarity=0.387 Sum_probs=40.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC-------------CCCceEEECCeecCCCChHHHhhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE-------------PADGTIIIDGVDIRTLGLHTLRSRL 262 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~-------------~~~G~I~i~g~~~~~~~~~~~~~~i 262 (602)
++++|+||||||||||++.|.+.++ |..|+ ++|++..-++...+++.+
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i 80 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI 80 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh
Confidence 8899999999999999999999886 66777 688877777777776654
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=2.4e-07 Score=94.85 Aligned_cols=37 Identities=22% Similarity=0.409 Sum_probs=30.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc----CCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII----EPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~----~~~~G~I~i~g~~ 249 (602)
+.++|+||||+|||||+++|+|.+ .+.+|.+..++.+
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~ 92 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGD 92 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHH
Confidence 569999999999999999999998 5667766655443
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.96 E-value=5.1e-06 Score=74.24 Aligned_cols=40 Identities=28% Similarity=0.294 Sum_probs=35.2
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
+|+.++|+|+||||||||++++++.+.+ +| .+.+++.++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhh
Confidence 7999999999999999999999999987 68 7888876544
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-06 Score=79.52 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=28.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC-CCceEEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP-ADGTIII 245 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~-~~G~I~i 245 (602)
++++|+||||||||||+++|.+.+++ ..|.|..
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 78999999999999999999999874 4555543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=97.96 E-value=2e-06 Score=99.90 Aligned_cols=56 Identities=16% Similarity=0.132 Sum_probs=42.7
Q ss_pred ccceeeEEec-------ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccce-EecCCccccc
Q psy3001 482 AGLVGLSVSY-------AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLT-IIPQDPVLFS 553 (602)
Q Consensus 482 ~~~~~l~i~~-------Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~-~V~Qdp~lf~ 553 (602)
..+++|++.. |++++|+||||||||||+|++ |++.+ ..++| ||||++. .
T Consensus 772 ~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~--------------------~aqiG~~Vpq~~~--~ 828 (1022)
T 2o8b_B 772 PNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV--------------------MAQMGCYVPAEVC--R 828 (1022)
T ss_dssp CEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH--------------------HHTTTCCEESSEE--E
T ss_pred eeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH--------------------HhheeEEeccCcC--C
Confidence 3456777776 899999999999999999999 99863 23566 9999873 2
Q ss_pred cchhccc
Q psy3001 554 GTLRLNL 560 (602)
Q Consensus 554 ~Tv~~nl 560 (602)
-||.+++
T Consensus 829 l~v~d~I 835 (1022)
T 2o8b_B 829 LTPIDRV 835 (1022)
T ss_dssp ECCCSBE
T ss_pred CCHHHHH
Confidence 2444443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.94 E-value=8.4e-06 Score=92.48 Aligned_cols=63 Identities=11% Similarity=0.047 Sum_probs=47.9
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccc-cCChhHHHHHHHHHHHhccc-cEEEE-eeeccccccc
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATA-AIDLETDDLIQSTIRSEFAH-CTVLT-IAHRLNTIID 413 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~-~tvi~-itH~l~~i~~ 413 (602)
+.|+.+|..++++++.+++++|+|||.. ++|.+....+...+.....+ +++++ +||+.+.+..
T Consensus 192 T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 192 TDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred CHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3699999999999999999999999997 88877655555555444433 55555 6898766654
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.86 E-value=5.7e-06 Score=85.08 Aligned_cols=56 Identities=23% Similarity=0.321 Sum_probs=35.2
Q ss_pred eEEEECCCCCChHHHHHHHHh-ccCCCCceEEECCeecCCCChhhhhccceEecCCccc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-IIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
.+.|+||+|+||||++++++| ++.|+.|++.++|.++.... ..+..+++++|++++
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~ 94 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHL 94 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceE
Confidence 389999999999999999999 89999999999998765322 226679999998865
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.84 E-value=7.3e-06 Score=75.68 Aligned_cols=40 Identities=25% Similarity=0.477 Sum_probs=33.1
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
+++++.+.++ +++|+|+||||||||+++|.+++.+..|..
T Consensus 18 ~~~~~~~~~g--~~~i~G~NGsGKStll~ai~~~l~~~~~~~ 57 (182)
T 3kta_A 18 KKVVIPFSKG--FTAIVGANGSGKSNIGDAILFVLGGLSAKA 57 (182)
T ss_dssp SCEEEECCSS--EEEEEECTTSSHHHHHHHHHHHTTCCCTGG
T ss_pred ccEEEecCCC--cEEEECCCCCCHHHHHHHHHHHHcCCcccc
Confidence 4566666654 899999999999999999999988876643
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=97.83 E-value=3.6e-05 Score=79.43 Aligned_cols=42 Identities=17% Similarity=0.277 Sum_probs=30.6
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhc--ccCCCCceEEE
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR--IIEPADGTIII 245 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g--~~~~~~G~I~i 245 (602)
.+++++++. ..++|||++|||||||++.|.| ++++.+|.+..
T Consensus 26 ~l~~i~~~l----p~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~ 69 (360)
T 3t34_A 26 ALPTLWDSL----PAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTR 69 (360)
T ss_dssp CC----CCC----CEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCC
T ss_pred ccccccccC----CEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccC
Confidence 355555555 4799999999999999999999 66777776543
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=1.1e-06 Score=84.29 Aligned_cols=56 Identities=29% Similarity=0.338 Sum_probs=44.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc---CCCCceEEE--------CCeecCC-CChHHHhhccceeccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII---EPADGTIII--------DGVDIRT-LGLHTLRSRLTIIPQV 268 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~---~~~~G~I~i--------~g~~~~~-~~~~~~~~~i~~v~Q~ 268 (602)
.+++|+|++||||||++++|++.+ .++.|.+.. +|.++.. .....+++.+++++|+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 73 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVS 73 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeec
Confidence 579999999999999999999877 678888876 6666542 3445677888888875
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=3.1e-06 Score=78.19 Aligned_cols=38 Identities=24% Similarity=0.377 Sum_probs=34.0
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCce
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT 522 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~ 522 (602)
-+|++.+|+.++|+||||+|||||++++++.+.|++|.
T Consensus 31 ~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~ 68 (180)
T 3ec2_A 31 HNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI 68 (180)
T ss_dssp HSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC
T ss_pred HhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC
Confidence 46777889999999999999999999999999877774
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.79 E-value=3.1e-05 Score=79.79 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEe-cccccCChhHHHHHHHHHHHhccccEEEEee--eccc
Q psy3001 352 VGQRQLICLARALLRKTKILILD-EATAAIDLETDDLIQSTIRSEFAHCTVLTIA--HRLN 409 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLD-Epts~LD~~~~~~i~~~l~~~~~~~tvi~it--H~l~ 409 (602)
.+++|++. +.+...++-++++| ++++++|.+....+...+.....++.+|+|. ||+.
T Consensus 234 ~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 234 EIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred HHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 58888776 55555677789999 9999999887766666666544477888888 6653
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=97.79 E-value=7.3e-06 Score=82.27 Aligned_cols=64 Identities=16% Similarity=0.266 Sum_probs=49.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-hh---h--hccceEecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-HT---L--RSRLTIIPQD 548 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-~~---l--r~~i~~V~Qd 548 (602)
.+++..+|++++|+|+|||||||++..|++.++++.|+|.+.+.|...... ++ + +.++.++++.
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~ 166 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHS 166 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCS
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecC
Confidence 566678899999999999999999999999999998999998877643221 11 1 2356677663
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=3.8e-06 Score=77.43 Aligned_cols=41 Identities=32% Similarity=0.486 Sum_probs=34.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
.+|+.++|+|++||||||++++|.+.+++ .| .+.+|+..+.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~ 45 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIR 45 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHH
Confidence 36889999999999999999999998866 67 6777876554
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.77 E-value=1.1e-05 Score=83.70 Aligned_cols=41 Identities=24% Similarity=0.466 Sum_probs=36.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh------------ccCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR------------IIEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g------------~~~~~~G~I~i~g~ 528 (602)
.++.|+++||+|+||+|||||+++|+| ..+|+.|.+.++|.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~ 68 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDE 68 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCc
Confidence 457899999999999999999999999 67799999999873
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.76 E-value=6.6e-06 Score=84.92 Aligned_cols=61 Identities=18% Similarity=0.203 Sum_probs=46.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf 552 (602)
.+++++++|+.++|+||+|||||||+++|+|.. .|++..-. .+.+..+..++++||.+.+|
T Consensus 161 ~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l 221 (377)
T 1svm_A 161 CMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVV 221 (377)
T ss_dssp HHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEE
T ss_pred hcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHH
Confidence 478899999999999999999999999999974 67765511 11122233588999987543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.1e-05 Score=75.58 Aligned_cols=37 Identities=32% Similarity=0.454 Sum_probs=31.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccC-----CC------CceEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE-----PA------DGTIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~-----~~------~G~I~i~g~~i 530 (602)
+++|+|+||||||||++.++|... |+ .|+|.++|.++
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~ 54 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 54 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEE
Confidence 589999999999999999999742 33 57899999765
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=97.75 E-value=1.4e-05 Score=83.62 Aligned_cols=33 Identities=39% Similarity=0.475 Sum_probs=31.5
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+++.|+.|+|+|+||||||||+++|+|..
T Consensus 149 ~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~ 181 (416)
T 1udx_A 149 RLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH 181 (416)
T ss_dssp EEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC
T ss_pred eeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 589999999999999999999999999999984
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=97.73 E-value=1.3e-05 Score=75.49 Aligned_cols=29 Identities=21% Similarity=0.330 Sum_probs=26.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
++++|+|+|||||||++++|++.+.|+.|
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 89999999999999999999999977655
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00011 Score=76.89 Aligned_cols=38 Identities=18% Similarity=0.244 Sum_probs=33.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 78999999999999999999999988888887755443
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.72 E-value=9.8e-06 Score=76.28 Aligned_cols=42 Identities=19% Similarity=0.264 Sum_probs=36.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG 254 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~ 254 (602)
++++|+|+|||||||+++.|.+.+++..|.|.+.+.|.....
T Consensus 23 ~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 23 LVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 789999999999999999999999999999988766554433
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=97.72 E-value=1.4e-05 Score=79.42 Aligned_cols=34 Identities=32% Similarity=0.332 Sum_probs=30.1
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I 523 (602)
.+.+|++++|+|+||||||||++.+++... .|++
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~ 59 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPD 59 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCC
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCC
Confidence 578999999999999999999999999764 5665
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=97.71 E-value=3.9e-05 Score=81.29 Aligned_cols=23 Identities=39% Similarity=0.502 Sum_probs=21.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++++|+.|+|||||++.++|..
T Consensus 177 ki~lvG~~nvGKSSLin~l~~~~ 199 (436)
T 2hjg_A 177 QFCLIGRPNVGKSSLVNAMLGEE 199 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=1.8e-05 Score=76.21 Aligned_cols=35 Identities=20% Similarity=0.193 Sum_probs=31.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+|+|||||||++++|+|. .|+|.+.+.+..
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~ 55 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVE 55 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHH
T ss_pred eEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHH
Confidence 89999999999999999999998 788999887653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.63 E-value=2e-05 Score=73.94 Aligned_cols=35 Identities=23% Similarity=0.305 Sum_probs=25.0
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+++|++.+|+.++|+|++||||||+.+.|++.+
T Consensus 15 ~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 15 TENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34699999999999999999999999999999876
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=3.5e-05 Score=81.68 Aligned_cols=66 Identities=20% Similarity=0.376 Sum_probs=43.6
Q ss_pred hCCCeEEEecccccCCh-hHHHHHHHHHHHhc-cccEEEEeeecc-ccccc-CCeEEE-EeCceEEeecCh
Q psy3001 366 RKTKILILDEATAAIDL-ETDDLIQSTIRSEF-AHCTVLTIAHRL-NTIID-SDRVLV-LDKGLVVEFDSP 431 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~-~~~~~i~~~l~~~~-~~~tvi~itH~l-~~i~~-~d~i~~-l~~G~i~~~g~~ 431 (602)
.+|++|++||+....+. .+...+...+.... .++.+|++||+. ..+.. .+++.- +..|.++....+
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p 263 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPP 263 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCC
Confidence 38999999999888764 56677777776643 468899999984 33332 233322 345666665544
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=97.63 E-value=1.9e-05 Score=79.05 Aligned_cols=42 Identities=24% Similarity=0.184 Sum_probs=36.1
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~i~g~~i~ 531 (602)
.+|++++++|+|||||||++..|++.+.+++| +|.+-+.|..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 47899999999999999999999999988889 6776655553
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.62 E-value=1.9e-05 Score=74.14 Aligned_cols=39 Identities=21% Similarity=0.232 Sum_probs=24.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.....+|+||...++ ++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~-~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAM-VRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CC-CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCC-CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 345789999999887 899999999999999999999876
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.9e-06 Score=90.87 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=42.2
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
+.|+||+|+|||||+++|++... .+.+.+++.++.+.......+.+..++|.
T Consensus 67 vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~ 118 (499)
T 2dhr_A 67 VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFET 118 (499)
T ss_dssp EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHH
Confidence 89999999999999999999875 78999999887665555555566666665
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.61 E-value=2.8e-05 Score=78.31 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=27.4
Q ss_pred eEEEECCCCCChHHHHHHHHhccC--CCCceEEE
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE--PADGTIII 525 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~--~~~G~I~i 525 (602)
++||+|+||||||||+++|.++++ |+.|.+.+
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~ 127 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEV 127 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEE
Confidence 699999999999999999999987 45666443
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.61 E-value=1.7e-05 Score=75.07 Aligned_cols=26 Identities=31% Similarity=0.493 Sum_probs=25.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++++|+||||||||||++.|++.+++
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 89999999999999999999999987
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=97.60 E-value=9.4e-06 Score=82.10 Aligned_cols=49 Identities=14% Similarity=0.188 Sum_probs=40.6
Q ss_pred eeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 203 DYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 203 ~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
+++|...++ ++++++|+||+||||++..|++.+.+..|+|.+.+.|...
T Consensus 97 ~l~~~~~~~-~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 97 RIDFKENRL-NIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp CCCCCTTSC-EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CccccCCCC-eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 344443344 8999999999999999999999999999999998777643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00041 Score=69.21 Aligned_cols=61 Identities=13% Similarity=0.067 Sum_probs=39.1
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhH----------HHHHHHHHHHhc-----cccEEEEeeecccccc
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLET----------DDLIQSTIRSEF-----AHCTVLTIAHRLNTII 412 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~----------~~~i~~~l~~~~-----~~~tvi~itH~l~~i~ 412 (602)
++++++..++++...+|.+|++||+.+.++... ...+...+.... .+..+|.+|++++.+.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~ 173 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELD 173 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBC
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCC
Confidence 466777778888888999999999988765422 122333343322 1245777888876543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.54 E-value=6.3e-05 Score=77.12 Aligned_cols=31 Identities=32% Similarity=0.407 Sum_probs=28.9
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
..++|++.+| +++|+|+||||||||+++|.+
T Consensus 18 ~~~~~~~~~g-~~~i~G~nG~GKttll~ai~~ 48 (359)
T 2o5v_A 18 APGTLNFPEG-VTGIYGENGAGKTNLLEAAYL 48 (359)
T ss_dssp CSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eeeEEEEcCC-eEEEECCCCCChhHHHHHHHH
Confidence 3588999999 999999999999999999997
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.52 E-value=3.9e-05 Score=77.33 Aligned_cols=37 Identities=24% Similarity=0.436 Sum_probs=30.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC--CCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE--PADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~--~~~G~I~i~g~~ 249 (602)
-++||+|+||||||||+++|.+++. |+.|.+.+-+.|
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 4799999999999999999999987 567776554333
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=3.2e-05 Score=70.80 Aligned_cols=35 Identities=20% Similarity=0.391 Sum_probs=31.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 789999999999999999999976 78888886654
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.50 E-value=3.3e-05 Score=79.23 Aligned_cols=41 Identities=27% Similarity=0.410 Sum_probs=35.6
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
.+.+|+|+|++|||||||++.|.|.+.++.|+|.+.+.|..
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 46689999999999999999999999888999888776654
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00045 Score=71.53 Aligned_cols=44 Identities=11% Similarity=0.032 Sum_probs=32.6
Q ss_pred hCCCeEEEecccccCChhHHHHHHHHHHHhc----cccEEEEeeecccc
Q psy3001 366 RKTKILILDEATAAIDLETDDLIQSTIRSEF----AHCTVLTIAHRLNT 410 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~~~~~~i~~~l~~~~----~~~tvi~itH~l~~ 410 (602)
.+|.++++||+... |+.....+...+.... .+.++|+++|+.+.
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~ 171 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAV 171 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchH
Confidence 45789999999766 8777777766665433 36789999998853
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.48 E-value=5e-05 Score=69.24 Aligned_cols=32 Identities=28% Similarity=0.365 Sum_probs=27.6
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
|++++|+|++||||||++++|++.+.+ +.+|+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 568999999999999999999998754 56665
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.45 E-value=2.7e-05 Score=84.36 Aligned_cols=38 Identities=34% Similarity=0.393 Sum_probs=34.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc-eEE-ECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG-TII-IDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G-~I~-i~g~~~ 250 (602)
++++|+|+||||||||+++|+|.+.|++| ++. +||.++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 89999999999999999999999999987 784 888654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.44 E-value=2e-05 Score=76.65 Aligned_cols=35 Identities=20% Similarity=0.228 Sum_probs=31.9
Q ss_pred ccceeeEEec---ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSY---AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~---Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++++|++.+ |++++|+|++||||||++++|++.+
T Consensus 35 l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 35 LKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4468999999 9999999999999999999999855
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=6.4e-05 Score=86.20 Aligned_cols=38 Identities=21% Similarity=0.133 Sum_probs=33.2
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHH--------HhccCCCCc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLAL--------FRIIEPADG 521 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L--------~g~~~~~~G 521 (602)
+++|++..|++++|+|||||||||++|++ .|.+-|.++
T Consensus 654 disl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~ 699 (934)
T 3thx_A 654 DVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCES 699 (934)
T ss_dssp EEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEE
T ss_pred cceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccc
Confidence 57888889999999999999999999999 787766554
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.41 E-value=5.6e-05 Score=80.91 Aligned_cols=74 Identities=19% Similarity=0.158 Sum_probs=56.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-cccc-chhcccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFSG-TLRLNLD 561 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~~-Tv~~nl~ 561 (602)
.+++.+++| +.|+||+|+|||||+++|++... .+.+.++|.++........++++..++|++. .... .+-+|++
T Consensus 58 ~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId 133 (499)
T 2dhr_A 58 EMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEID 133 (499)
T ss_dssp TTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGG
T ss_pred hccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHH
Confidence 477888888 99999999999999999999975 7899999988766554455567888888874 2222 3456664
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=97.40 E-value=5.3e-05 Score=83.75 Aligned_cols=60 Identities=18% Similarity=0.261 Sum_probs=48.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCC-ceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPAD-GTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~-G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++.+..|+.+.|+||+|+|||||+++|++++++.. |.+.+++.+.... ...++++||..
T Consensus 53 l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~ 113 (604)
T 3k1j_A 53 IKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQ 113 (604)
T ss_dssp HHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTH
T ss_pred ccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecch
Confidence 667778889999999999999999999999999887 7788877654432 33577877654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.39 E-value=3.9e-05 Score=83.58 Aligned_cols=64 Identities=19% Similarity=0.174 Sum_probs=38.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+++++ +|+.+.|+||+|+|||||+++|++.+.+..|+|.++|..-........++.+|+.+|..
T Consensus 102 ~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~ 165 (543)
T 3m6a_A 102 LTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRI 165 (543)
T ss_dssp HSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CH
T ss_pred hcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHH
Confidence 34444 79999999999999999999999999998899988874322211223345677777765
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0005 Score=69.67 Aligned_cols=36 Identities=28% Similarity=0.481 Sum_probs=27.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.|+.+.-.+.+| +++.|.|++|+|||||+.-++...
T Consensus 35 ~LD~~~gGl~~G-~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 35 QLDNYTSGFNKG-SLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHCSBCTT-CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCC-cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 344444345566 999999999999999998877654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.37 E-value=8.1e-05 Score=78.72 Aligned_cols=36 Identities=19% Similarity=0.284 Sum_probs=30.2
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
.+++..|++++|+||||||||||+++|+++..+.++
T Consensus 20 ~~~~~~~~~~~i~G~nG~GKstll~ai~~~~~~~~~ 55 (430)
T 1w1w_A 20 KVGFGESNFTSIIGPNGSGKSNMMDAISFVLGVRSN 55 (430)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred eEEecCCCEEEEECCCCCCHHHHHHHHHhhhccccc
Confidence 366778999999999999999999999999888653
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=7.9e-05 Score=84.31 Aligned_cols=34 Identities=26% Similarity=0.166 Sum_probs=30.1
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+++|+ ..|++++|+||||||||||+|+++|+.
T Consensus 598 lndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 598 ANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eeccccc-CCCcEEEEECCCCCChHHHHHHHHHHH
Confidence 3457777 789999999999999999999999974
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=0.0027 Score=76.74 Aligned_cols=40 Identities=28% Similarity=0.374 Sum_probs=32.5
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCe
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGV 528 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~ 528 (602)
+.+|+.+.|.|++|+|||||+..++.......|.+ ++++.
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~E 769 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 769 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEecc
Confidence 89999999999999999999999988765444554 45553
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=7.8e-05 Score=70.73 Aligned_cols=39 Identities=15% Similarity=0.162 Sum_probs=32.6
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.+++|++++|+|+||||||||++.+++ ++..+.++++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~ 54 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTE 54 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESS
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECC
Confidence 478999999999999999999999999 444556677654
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=97.33 E-value=5.7e-05 Score=86.41 Aligned_cols=35 Identities=26% Similarity=0.118 Sum_probs=30.5
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
...+++|++..|++++|+||||||||||+|++.++
T Consensus 662 V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 662 VPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHH
T ss_pred ecccccccCCCCeEEEEECCCCCchHHHHHHHHHH
Confidence 34468888899999999999999999999998753
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00063 Score=65.52 Aligned_cols=28 Identities=32% Similarity=0.398 Sum_probs=23.8
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
.++|+|++|+|||||++.|.|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 4899999999999999999997665544
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.32 E-value=5.5e-05 Score=77.35 Aligned_cols=46 Identities=22% Similarity=0.296 Sum_probs=39.7
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
+++....|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|.
T Consensus 49 l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 49 IMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 5677788999999999999999999999999988888887665554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=4.1e-05 Score=72.53 Aligned_cols=45 Identities=24% Similarity=0.367 Sum_probs=38.5
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCCCCc--eEEECCeecC
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDIR 531 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G--~I~i~g~~i~ 531 (602)
+.+.+|..+.|+|++||||||+++.|.+.++|..| .+.++|.++.
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 44567889999999999999999999999987788 8889876553
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.30 E-value=5e-05 Score=82.33 Aligned_cols=68 Identities=26% Similarity=0.281 Sum_probs=49.3
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhc----------------------c----------------CCCCceEE
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI----------------------I----------------EPADGTII 524 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~----------------------~----------------~~~~G~I~ 524 (602)
+.+++++.+| ..+|+|+||||||||+.+|..+ + ...+++++
T Consensus 52 ~~~~l~f~~g-~n~i~G~NGaGKS~lleAl~~llg~r~~~~~i~~g~~~a~v~~~f~~~~~~~~~~i~r~~~~~g~~~~~ 130 (517)
T 4ad8_A 52 TQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGAAR 130 (517)
T ss_dssp SCEEEECCCS-EEEEEESHHHHHHHHTHHHHHHTCSCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCCEEE
T ss_pred eeEEEecCCC-eEEEEcCCCCCHHHHHHHHHHHhcCCcHHHHhcCCCCcEEEEEEEEecCCCCeEEEEEEEecCCCcEEE
Confidence 4578888888 8999999999999999999665 3 22356788
Q ss_pred ECCeecCCCChhhh-hccceEecCCccc
Q psy3001 525 IDGVDIRTLGLHTL-RSRLTIIPQDPVL 551 (602)
Q Consensus 525 i~g~~i~~~~~~~l-r~~i~~V~Qdp~l 551 (602)
++|++++.....++ ...+.+++|+-.+
T Consensus 131 ing~~v~~~~l~~~~~~li~i~~q~~~~ 158 (517)
T 4ad8_A 131 LSGEVVSVRELQEWAQGRLTIHWQHSAV 158 (517)
T ss_dssp SSSSBCCHHHHHHHHTTTEEEESGGGGG
T ss_pred ECCEECCHHHHHHHhhhheEEeCCchHH
Confidence 88877654334444 3346788887543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0014 Score=66.34 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++.|.|++|||||||+..++...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 899999999999999998887653
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0001 Score=67.10 Aligned_cols=26 Identities=31% Similarity=0.399 Sum_probs=23.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++++|+|+|||||||++++|++.+.+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 67999999999999999999998754
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=97.26 E-value=3.4e-05 Score=79.59 Aligned_cols=60 Identities=18% Similarity=0.182 Sum_probs=42.2
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceeccc
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~ 268 (602)
.++++++..+++ ++++|+||+|||||||+++|+|.+ +|.+.... . +...++..+++++|.
T Consensus 158 ~l~~~~~~i~~~-~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~ 217 (377)
T 1svm_A 158 FLKCMVYNIPKK-RYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQ 217 (377)
T ss_dssp HHHHHHHCCTTC-CEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTC
T ss_pred HHHhcccccCCC-CEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcch
Confidence 456667777776 899999999999999999999964 67765511 1 111223346777764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=75.33 Aligned_cols=32 Identities=31% Similarity=0.253 Sum_probs=27.5
Q ss_pred cceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 483 GLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 483 ~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
..+++++..| .++|+|+||||||||+.+|+..
T Consensus 15 ~~~~i~~~~g-~~~i~G~NGaGKTTll~ai~~a 46 (365)
T 3qf7_A 15 KNVDIEFQSG-ITVVEGPNGAGKSSLFEAISFA 46 (365)
T ss_dssp EEEEEECCSE-EEEEECCTTSSHHHHHHHHHHH
T ss_pred cceEEecCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3578888888 7889999999999999999843
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.22 E-value=4.6e-05 Score=73.75 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=39.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHH-HhccCCCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLAL-FRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L-~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
+-.+.+|+.+.|+|+||||||||+..+ .+..+...+.+++++.. ......+...++++.+|++
T Consensus 17 ~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~-~~~~~~~~~~~~g~~~~~~ 80 (247)
T 2dr3_A 17 HGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE-HPVQVRQNMAQFGWDVKPY 80 (247)
T ss_dssp TTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS-CHHHHHHHHHTTTCCCHHH
T ss_pred CCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHHcCCCHHHH
Confidence 345789999999999999999996555 55555444555565432 1111112223577777654
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00016 Score=73.84 Aligned_cols=61 Identities=18% Similarity=0.211 Sum_probs=45.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeecCCCChhhhhccceEecCCccc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQDPVL 551 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Qdp~l 551 (602)
-+.+|+++.|.|++|||||||+..+++...+..|.+ ++++.... .....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~---~~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL---DPVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC---CHHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc---chHHHHHcCCchhhhhh
Confidence 367899999999999999999999999887777765 66654322 22245567887777644
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=74.02 Aligned_cols=53 Identities=32% Similarity=0.421 Sum_probs=38.1
Q ss_pred ccee-EEEECCCCCChHHHHHHHHhccC-----------CCCceEEECCeecCCCChhhhhccceEecCCc
Q psy3001 491 YAMQ-VGIVGRTGAGKSSLTLALFRIIE-----------PADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 491 ~Ge~-v~ivG~nGsGKSTLl~~L~g~~~-----------~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
.|-. |+|+|++|||||||++.|+|... ++.|+|.++|.++. +..-.|++.|.|
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp 241 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIP 241 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCC
Confidence 3444 99999999999999999999865 56788999986553 223466666655
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.00023 Score=64.81 Aligned_cols=41 Identities=44% Similarity=0.449 Sum_probs=30.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCC------------CCceEEECCeec
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEP------------ADGTIIIDGVDI 530 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~------------~~G~I~i~g~~i 530 (602)
++|.+|+|+|++|+|||||++.++|...+ ..+.+.++|.++
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 54 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHIDGMPL 54 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEECCeEE
Confidence 35778999999999999999999986421 125667777543
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00012 Score=71.22 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=22.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++++|+|++||||||+.++|++.+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhc
Confidence 789999999999999999999865
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00018 Score=69.02 Aligned_cols=41 Identities=17% Similarity=0.313 Sum_probs=31.7
Q ss_pred ceeeEEe---cceeEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 484 LVGLSVS---YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 484 ~~~l~i~---~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
..++++. +|..++|.|++||||||+++.|...+++ .+.+..
T Consensus 15 ~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 15 TENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -----CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 4555555 8999999999999999999999999987 666654
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0007 Score=67.85 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~ 242 (602)
..+.|+||+|+||||+++.+++...+..|.
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 568999999999999999999987665553
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00059 Score=70.41 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=23.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA 239 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~ 239 (602)
..+.|.|++|+|||||++.+++...+.
T Consensus 46 ~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 46 NNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 679999999999999999999876543
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00011 Score=67.60 Aligned_cols=37 Identities=32% Similarity=0.490 Sum_probs=30.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc--eEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G--~I~i~g~~~ 250 (602)
++++|+|++||||||+++.|++.+.+ .| .+.+++..+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 78999999999999999999998866 56 666665443
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00097 Score=68.06 Aligned_cols=23 Identities=22% Similarity=0.320 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+++.|.|++|||||||+..++..
T Consensus 123 ~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 123 AITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 89999999999999999988875
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0019 Score=62.76 Aligned_cols=25 Identities=32% Similarity=0.348 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.-+.|+||+|+||||+++++++...
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcC
Confidence 3489999999999999999998764
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.10 E-value=0.0023 Score=66.88 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=36.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
++++++|++||||||++..|++.+.+..|+|.+.+.|...
T Consensus 99 ~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 8999999999999999999999999999999987766543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00011 Score=69.01 Aligned_cols=29 Identities=17% Similarity=0.312 Sum_probs=25.6
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
..+|..++|+|++|||||||++.|...++
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 34678899999999999999999998774
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00033 Score=62.30 Aligned_cols=29 Identities=31% Similarity=0.343 Sum_probs=23.1
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
..+.+.+| ..+|+||||||||||+.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34455544 789999999999999999963
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.06 E-value=0.00026 Score=74.06 Aligned_cols=47 Identities=19% Similarity=0.138 Sum_probs=41.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
.++|+ ++++++++|++||||||++..|++.+.+..|+|.+.+.|+..
T Consensus 92 ~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 92 LPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred cccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 46666 899999999999999999999999999998999987766644
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00016 Score=74.12 Aligned_cols=40 Identities=25% Similarity=0.336 Sum_probs=34.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 252 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~ 252 (602)
.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 75 ~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 75 FRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 7899999999999999999999999999999887765543
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=8.2e-05 Score=71.34 Aligned_cols=69 Identities=20% Similarity=0.267 Sum_probs=41.3
Q ss_pred eeEEEECCCCCChHHHHHHHHh---ccCCCCceEE--------ECCeecCCCC-hhhhhccceEec------CCcccccc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFR---IIEPADGTII--------IDGVDIRTLG-LHTLRSRLTIIP------QDPVLFSG 554 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g---~~~~~~G~I~--------i~g~~i~~~~-~~~lr~~i~~V~------Qdp~lf~~ 554 (602)
-+++|+|++||||||+.+.|+. +.-.+.|.+. -.|.++.... ..++...+.+.+ |+.+++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 4799999999999999999984 4444555542 2244433321 234445566655 33344444
Q ss_pred chhcccC
Q psy3001 555 TLRLNLD 561 (602)
Q Consensus 555 Tv~~nl~ 561 (602)
.|.++|.
T Consensus 90 ~v~~~ir 96 (233)
T 3r20_A 90 DVSSEIR 96 (233)
T ss_dssp ECTTGGG
T ss_pred ehhhhhc
Confidence 5655543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0003 Score=66.05 Aligned_cols=29 Identities=28% Similarity=0.610 Sum_probs=24.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
++||+|++||||||+.+.|+++ |...+|+
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccch
Confidence 5899999999999999999983 5555654
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00031 Score=67.34 Aligned_cols=47 Identities=15% Similarity=0.371 Sum_probs=32.1
Q ss_pred EEEeeeEEEEe---cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 199 VEFKDYKVRYR---EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 199 i~~~~vs~~~~---~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
+.+.++++.+. .| .+++|.|++||||||+++.|...+.+ .+.+....
T Consensus 11 ~~~~~~~~~~~~~~~g-~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~ 60 (229)
T 4eaq_A 11 VDLGTENLYFQSNAMS-AFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTR 60 (229)
T ss_dssp ---------CCCCCCC-EEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEC
T ss_pred cCccCCCeeEeecCCC-eEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeec
Confidence 45666666664 44 89999999999999999999999988 77776543
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0027 Score=62.63 Aligned_cols=24 Identities=25% Similarity=0.283 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++.++..+
T Consensus 52 ~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 52 KGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp SEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHh
Confidence 458999999999999999998864
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0022 Score=64.69 Aligned_cols=25 Identities=28% Similarity=0.258 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.|.||+|+|||||++.+++...
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~ 62 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAK 62 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHH
Confidence 4589999999999999999998654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.98 E-value=0.0002 Score=71.52 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=40.8
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 92 i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 92 VIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred cccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 667766 99999999999999999999999998888899887766543
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0003 Score=74.54 Aligned_cols=39 Identities=38% Similarity=0.526 Sum_probs=32.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC------------CCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE------------PADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~------------~~~G~I~i~g~~~~ 251 (602)
-.++|+|++|+|||||++.|.|... +..|.+.++|.++.
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~ 231 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 231 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEE
Confidence 4599999999999999999999853 66789999987553
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00041 Score=61.68 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.+|+|||||||||++.+|.-.
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~ 46 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999998743
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00037 Score=72.00 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=33.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhc-----------cCCCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRI-----------IEPADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~-----------~~~~~G~I~i~g~ 528 (602)
.+..|.+++|+|++|+|||||+++|+|. ..|..|.+.+++.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 3456788999999999999999999998 6778888877653
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0042 Score=69.96 Aligned_cols=29 Identities=24% Similarity=0.269 Sum_probs=24.0
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+++...+-+.||.|+|||.|++++++...
T Consensus 508 ~~~~~gvLl~GPPGtGKT~lAkaiA~e~~ 536 (806)
T 3cf2_A 508 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 536 (806)
T ss_dssp CCCCSCCEEESSTTSSHHHHHHHHHHTTT
T ss_pred CCCCceEEEecCCCCCchHHHHHHHHHhC
Confidence 34444589999999999999999998864
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00034 Score=64.56 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=34.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeec
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDI 530 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i 530 (602)
...+|..+.|+|++||||||+++.|++.+.+..|.+ .+++.++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 345788999999999999999999999988777765 4665443
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00082 Score=68.50 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.7
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
+.+.||+|+||||+++++++.+.+..+
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 899999999999999999998765443
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.88 E-value=0.0013 Score=61.32 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=21.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.|.|++|+|||||++.++....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999988654
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00058 Score=64.17 Aligned_cols=25 Identities=32% Similarity=0.526 Sum_probs=23.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|+|++||||||+++.|.+.++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTST
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 7899999999999999999999864
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00019 Score=67.83 Aligned_cols=37 Identities=22% Similarity=0.301 Sum_probs=32.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCc--eEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADG--TIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G--~I~i~g~~ 249 (602)
.+++|+|++||||||+.+.|.+.+.|..| .+.+++.+
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 78999999999999999999999988888 78887543
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00086 Score=60.34 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+++|+|++|+|||||++.++|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999853
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0046 Score=61.73 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=22.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++++++..
T Consensus 50 ~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 50 KGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCcCHHHHHHHHHHHh
Confidence 568999999999999999999865
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00048 Score=70.86 Aligned_cols=41 Identities=20% Similarity=0.297 Sum_probs=31.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHh--ccCCCCceEEECC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDG 527 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~~~G~I~i~g 527 (602)
.++++++ .|+|+|.+|||||||+++|.| ++++.+|.+...+
T Consensus 29 ~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p 71 (360)
T 3t34_A 29 TLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRP 71 (360)
T ss_dssp ---CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSC
T ss_pred cccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcc
Confidence 3556666 799999999999999999999 7788888765443
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00046 Score=64.56 Aligned_cols=35 Identities=29% Similarity=0.428 Sum_probs=28.3
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
..+|+|+|++||||||+++.|++.+ |...+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 3469999999999999999999876 5566765444
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.018 Score=58.86 Aligned_cols=27 Identities=33% Similarity=0.534 Sum_probs=22.6
Q ss_pred ecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 209 REGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 209 ~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++ +++.|.|++|||||||+..++...
T Consensus 61 ~~G-~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 61 PMG-RIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp ETT-SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCC-eEEEEECCCCCCHHHHHHHHHHHH
Confidence 344 899999999999999998777654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00057 Score=62.43 Aligned_cols=37 Identities=22% Similarity=0.258 Sum_probs=29.4
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCC---CceEEECCee
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVD 529 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~---~G~I~i~g~~ 529 (602)
..++|+|++|||||||++.|++.+++. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 368999999999999999999986543 3677777644
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00061 Score=74.06 Aligned_cols=61 Identities=18% Similarity=0.213 Sum_probs=35.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhh
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIF 273 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~ 273 (602)
+.++|+||||+|||||+++|++...+..|.|.++|......-....++.++..++.....|
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~ 169 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGM 169 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHH
Confidence 7899999999999999999999999998998887753322112223456677776544433
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00065 Score=62.37 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+++|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00059 Score=63.86 Aligned_cols=21 Identities=29% Similarity=0.638 Sum_probs=20.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999998
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00066 Score=62.56 Aligned_cols=32 Identities=19% Similarity=0.265 Sum_probs=26.3
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.++++..+|..++|+|+.||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36778888999999999999999999999876
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00018 Score=73.46 Aligned_cols=38 Identities=26% Similarity=0.320 Sum_probs=33.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.+++|+|++|+|||||++.|++.+.+..|++.+-+.+.
T Consensus 57 ~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 57 LRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 78999999999999999999999998888888765554
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00033 Score=65.79 Aligned_cols=25 Identities=20% Similarity=0.357 Sum_probs=23.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|+|+|||||||+.+.|...++
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 7899999999999999999998774
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0013 Score=70.16 Aligned_cols=50 Identities=18% Similarity=0.167 Sum_probs=42.4
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHh--ccCCCCceEEECCeecCCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFR--IIEPADGTIIIDGVDIRTL 533 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g--~~~~~~G~I~i~g~~i~~~ 533 (602)
.+.+.+.++..+.|+|.|||||||++++|.. +++++.|++.+-+.|.+..
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~ 210 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKML 210 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSS
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchh
Confidence 4778888999999999999999999999986 6677778888877776653
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0015 Score=62.29 Aligned_cols=45 Identities=13% Similarity=0.217 Sum_probs=33.4
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
+|.++++||.-. +|+.....+...+.....+..+|+++++...+.
T Consensus 126 ~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~~ 170 (250)
T 1njg_A 126 RFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 170 (250)
T ss_dssp SSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSC
T ss_pred CceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhCC
Confidence 578999999755 787777777777765545677888888876543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0005 Score=64.34 Aligned_cols=33 Identities=30% Similarity=0.426 Sum_probs=26.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~ 249 (602)
.+++|+|++||||||+.+.|++.+ |...+++.+
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 579999999999999999999876 445555433
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0045 Score=62.24 Aligned_cols=50 Identities=18% Similarity=0.208 Sum_probs=34.2
Q ss_pred hhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccE--EEEeee
Q psy3001 352 VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCT--VLTIAH 406 (602)
Q Consensus 352 ~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t--vi~itH 406 (602)
.++++|++.|...+.++++++.|+|...+ ..+...++.+. .+.. +|+|.|
T Consensus 136 ~~~~~~l~~a~~~l~~~~i~i~d~~~~~~-----~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 136 SEDWGKLSMAIGEISNSNINIFDKAGQSV-----NYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp SSCHHHHHHHHHHHHTSCEEEECCSCCBH-----HHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCCCCCH-----HHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 48999999999999999999999986443 23333333332 2445 666665
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.62 E-value=0.00081 Score=62.91 Aligned_cols=21 Identities=29% Similarity=0.580 Sum_probs=20.2
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++|+|++||||||+.+.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 589999999999999999999
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.00098 Score=64.88 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=34.8
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
....+..+.|+|++||||||+.+.|++.+. .+.+.+++..+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456678899999999999999999999875 366888886654
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00088 Score=61.16 Aligned_cols=37 Identities=24% Similarity=0.325 Sum_probs=29.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC---CceEEECCee
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA---DGTIIIDGVD 249 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~---~G~I~i~g~~ 249 (602)
.+++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 679999999999999999999986543 3667766543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0014 Score=60.49 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=29.4
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHh----cc----CCCCceEEECCeecC
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFR----II----EPADGTIIIDGVDIR 531 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g----~~----~~~~G~I~i~g~~i~ 531 (602)
++++.+.. +|+++|++|+|||||++.+.+ .+ .++.+++.++|..+.
T Consensus 17 ~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~~ 70 (190)
T 1m2o_B 17 LGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKFT 70 (190)
T ss_dssp -------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEEE
T ss_pred hhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEEE
Confidence 55555555 689999999999999999998 22 233456777775443
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0018 Score=58.11 Aligned_cols=24 Identities=25% Similarity=0.295 Sum_probs=21.6
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++|+|++|+|||||++.+.|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999998643
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.53 E-value=0.00033 Score=71.50 Aligned_cols=60 Identities=20% Similarity=0.227 Sum_probs=39.6
Q ss_pred eEEeccee--EEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC-CChhhhhccceEec
Q psy3001 487 LSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIP 546 (602)
Q Consensus 487 l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~-~~~~~lr~~i~~V~ 546 (602)
..+..|+. +.+.||+|+||||+++++++.+.+..+.+.+.+.+... ...+.+|..+..++
T Consensus 39 ~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~ 101 (340)
T 1sxj_C 39 KFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFA 101 (340)
T ss_dssp HHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHH
T ss_pred HHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHH
Confidence 33445655 89999999999999999999987777665444433332 22344554444444
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0011 Score=66.38 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=22.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
++.+|+|+|++|+|||||++.|+|.
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCC
Confidence 4457999999999999999999996
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0018 Score=58.70 Aligned_cols=24 Identities=50% Similarity=0.365 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..++|+|++|+|||||++.+.|..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 679999999999999999999864
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0082 Score=57.48 Aligned_cols=125 Identities=15% Similarity=0.102 Sum_probs=0.0
Q ss_pred CceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccce
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSV 291 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~ 291 (602)
++.++++|+|||||||++.++........|. ...+.++.+.|.
T Consensus 76 g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~--------------------- 118 (235)
T 3llm_A 76 NSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPR--------------------- 118 (235)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESS---------------------
T ss_pred CCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccc---------------------
Q ss_pred eeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCC--------------ChhhHHH
Q psy3001 292 LYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG--------------NVGQRQL 357 (602)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsg--------------s~Gq~Qr 357 (602)
........+.+............|..... ..|.-.+
T Consensus 119 ------------------------------~~la~q~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~ 168 (235)
T 3llm_A 119 ------------------------------RISAVSVAERVAFERGEEPGKSCGYSVRFESILPRPHASIMFCTVGVLLR 168 (235)
T ss_dssp ------------------------------HHHHHHHHHHHHHTTTCCTTSSEEEEETTEEECCCSSSEEEEEEHHHHHH
T ss_pred ------------------------------hHHHHHHHHHHHHHhccccCceEEEeechhhccCCCCCeEEEECHHHHHH
Q ss_pred HHHHHHHhhCCCeEEEecccc-cCChhHHHHHHHHHHHhccccEEEEee
Q psy3001 358 ICLARALLRKTKILILDEATA-AIDLETDDLIQSTIRSEFAHCTVLTIA 405 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts-~LD~~~~~~i~~~l~~~~~~~tvi~it 405 (602)
...+ .+.+-+++|+||+-. ++|........+.+.....+.-+++.|
T Consensus 169 ~l~~--~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~~il~S 215 (235)
T 3llm_A 169 KLEA--GIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVRIVLMS 215 (235)
T ss_dssp HHHH--CCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSEEEEEE
T ss_pred HHHh--hhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCeEEEEe
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0014 Score=60.18 Aligned_cols=23 Identities=39% Similarity=0.632 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|+|++|+|||||++.++|..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999999964
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=60.50 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=22.2
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
..+.+.+| ..+|+|+|||||||++.+|.
T Consensus 17 ~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34444443 78999999999999999884
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=61.68 Aligned_cols=45 Identities=24% Similarity=0.395 Sum_probs=33.3
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHHhc--------cCCCCceEEECCeec
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRI--------IEPADGTIIIDGVDI 530 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~--------~~~~~G~I~i~g~~i 530 (602)
++++.+.+ +|+++|++|+|||||++.+.+- ..++.+++.++|..+
T Consensus 19 ~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 19 LGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp HTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred hhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 45555555 5899999999999999999872 233557788877544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0015 Score=61.32 Aligned_cols=23 Identities=39% Similarity=0.470 Sum_probs=20.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.+|+|+|||||||++.+|.-.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~ 46 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVG 46 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 68999999999999999988744
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=96.41 E-value=0.0017 Score=66.11 Aligned_cols=31 Identities=29% Similarity=0.334 Sum_probs=23.2
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHH-Hhcc
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLAL-FRII 516 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L-~g~~ 516 (602)
..+.+.+| +.+|+||||||||||+.+| .+++
T Consensus 17 ~~i~f~~~-~~~i~G~NGsGKS~lleAi~~~l~ 48 (339)
T 3qkt_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILVGLY 48 (339)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eEEcCCCC-eEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445444 6799999999999999987 3344
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0014 Score=60.00 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
-.++++|++|+|||||++.+++.
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999984
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.037 Score=58.38 Aligned_cols=37 Identities=19% Similarity=0.230 Sum_probs=27.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
++.+.-.+.+| +++.|.|++|+|||||+.-++.....
T Consensus 190 LD~~lgGl~~G-~l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 190 LDQLIGTLGPG-SLNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp HHHHHCCCCTT-CEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred hhhhcCCcCCC-cEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 33333234455 89999999999999999888776543
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0012 Score=60.75 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=28.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
.++.|+|++||||||+.+.|++.+.+..+.+.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~ 45 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVE 45 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 78999999999999999999999887777653
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.016 Score=59.37 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+|||||++.++...
T Consensus 118 ~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 118 KGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHc
Confidence 568999999999999999998754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0019 Score=59.23 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=22.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.+|..++|+|++||||||+.+.|+..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~ 27 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQE 27 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 35788999999999999999999853
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0021 Score=65.65 Aligned_cols=59 Identities=19% Similarity=0.278 Sum_probs=38.2
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCceE-EECCeecCCCChhhhhccceEecCCc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGVDIRTLGLHTLRSRLTIIPQDP 549 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I-~i~g~~i~~~~~~~lr~~i~~V~Qdp 549 (602)
-+.+|+++.|.|++|||||||+..++.......|.+ +++... ... ....+++++-+|+.
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~-~~~a~~lG~~~~~l 116 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALD-PEYAKKLGVDTDSL 116 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCC-HHHHHHTTCCGGGC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcC-HHHHHHcCCCHHHe
Confidence 467999999999999999999888876554444554 455432 111 12234456555543
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.013 Score=51.46 Aligned_cols=89 Identities=16% Similarity=0.168 Sum_probs=0.0
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceeee
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYF 294 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (602)
+.|.|++|+|||++++.|........+...++...+.+
T Consensus 27 vll~G~~GtGKt~lA~~i~~~~~~~~~~~v~~~~~~~~------------------------------------------ 64 (145)
T 3n70_A 27 VWLYGAPGTGRMTGARYLHQFGRNAQGEFVYRELTPDN------------------------------------------ 64 (145)
T ss_dssp EEEESSTTSSHHHHHHHHHHSSTTTTSCCEEEECCTTT------------------------------------------
T ss_pred EEEECCCCCCHHHHHHHHHHhCCccCCCEEEECCCCCc------------------------------------------
Q ss_pred ccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEe
Q psy3001 295 FIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILD 374 (602)
Q Consensus 295 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLD 374 (602)
.....-.+..| +..+|++|
T Consensus 65 ----------------------------------------------------------~~~~~~~~~~a---~~g~l~ld 83 (145)
T 3n70_A 65 ----------------------------------------------------------APQLNDFIALA---QGGTLVLS 83 (145)
T ss_dssp ----------------------------------------------------------SSCHHHHHHHH---TTSCEEEE
T ss_pred ----------------------------------------------------------chhhhcHHHHc---CCcEEEEc
Q ss_pred cccccCChhHHHHHHHHHHHhccccEEEEeeec
Q psy3001 375 EATAAIDLETDDLIQSTIRSEFAHCTVLTIAHR 407 (602)
Q Consensus 375 Epts~LD~~~~~~i~~~l~~~~~~~tvi~itH~ 407 (602)
|. ..|++.....+...+.....+..+|.+|.+
T Consensus 84 ei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 84 HP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp CG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred Ch-HHCCHHHHHHHHHHHhhcCCCEEEEEECCc
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0016 Score=63.28 Aligned_cols=43 Identities=28% Similarity=0.341 Sum_probs=31.9
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
++....| +.|+|++|+|||||++++++..... -+.+++.++..
T Consensus 41 ~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~~~ 83 (257)
T 1lv7_A 41 GGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDFVE 83 (257)
T ss_dssp --CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSSTT
T ss_pred CCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHHHH
Confidence 3344444 8999999999999999999987532 47788776654
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0029 Score=64.58 Aligned_cols=36 Identities=39% Similarity=0.603 Sum_probs=30.1
Q ss_pred ceeEEEECCCCCChHHHHHHHHh-----------ccCCCCceEEECC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDG 527 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g-----------~~~~~~G~I~i~g 527 (602)
|.+++|+|++|+|||||+++|++ -..|..|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999999 3467778877765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0018 Score=59.31 Aligned_cols=25 Identities=36% Similarity=0.555 Sum_probs=20.7
Q ss_pred eEEEEeccCCChhHHHHHHhcccCC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
.++|+|++|+|||||++.+.+...+
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~ 28 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKS 28 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC---
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCc
Confidence 4899999999999999999997544
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0027 Score=60.96 Aligned_cols=28 Identities=32% Similarity=0.442 Sum_probs=24.0
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
+|+|+|++|+|||||++.|+|...+.++
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997665554
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0023 Score=66.04 Aligned_cols=35 Identities=29% Similarity=0.456 Sum_probs=29.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcc-----------cCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI-----------IEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~-----------~~~~~G~I~i~g 247 (602)
..++|||++|+|||||++.|+|. ..|..|.+.+.+
T Consensus 23 ~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 23 LKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 56999999999999999999998 567788887765
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0035 Score=63.82 Aligned_cols=44 Identities=20% Similarity=0.309 Sum_probs=33.9
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
+++++++|| ...+++.....+.+.+........+|+++++...+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l 176 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTRI 176 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhhC
Confidence 567999999 67888888888888887765556677788776654
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0033 Score=57.94 Aligned_cols=32 Identities=19% Similarity=0.224 Sum_probs=20.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
++++++..+. -.++++|++|+|||||++.+.+
T Consensus 14 l~~~~~~~~~--~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 14 LASLGLWNKH--GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------CEEEEEESTTSSHHHHHHHHHH
T ss_pred HHHhhccCCc--cEEEEECCCCCCHHHHHHHHhc
Confidence 3455554333 3689999999999999999987
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0026 Score=61.04 Aligned_cols=27 Identities=22% Similarity=0.316 Sum_probs=23.3
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
-.+|.+++|+|++||||||+.+.|++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~ 39 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKD 39 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 356778999999999999999999863
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0028 Score=58.92 Aligned_cols=30 Identities=33% Similarity=0.544 Sum_probs=25.4
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
.+|+|+|++||||||+.+.|+.. |-..+|.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 46999999999999999999985 6566664
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=96.12 E-value=0.002 Score=65.71 Aligned_cols=34 Identities=21% Similarity=0.148 Sum_probs=31.1
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+..+.+.+|++++|+|++|+|||||++.|++...
T Consensus 166 D~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 166 DLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred eeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 3678899999999999999999999999999864
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.024 Score=54.84 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=21.2
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.++...
T Consensus 40 ~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 40 KGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0055 Score=56.14 Aligned_cols=37 Identities=38% Similarity=0.626 Sum_probs=28.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc-----cCCCCc----eEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI-----IEPADG----TIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~-----~~~~~G----~I~i~g~~i 530 (602)
+|+|+|+.|+|||||++.+.+- +.|+.| ++.++|..+
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 67 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEE
Confidence 5899999999999999766553 566666 677777543
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0028 Score=57.18 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.9
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998764
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0025 Score=66.68 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=35.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
++.+++++|++||||||++..|++.+.+..++|.+-+.|+.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 57899999999999999999999999988888887665543
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0035 Score=57.03 Aligned_cols=26 Identities=23% Similarity=0.349 Sum_probs=23.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
|..+.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45689999999999999999998764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.044 Score=57.32 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=27.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
.+++++|++|+||||++.-|+..+....-+|.+
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 689999999999999999999877655445544
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0026 Score=61.79 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=29.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~ 250 (602)
.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 6799999999999999999998775 35677777544
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=95.99 E-value=0.0019 Score=64.37 Aligned_cols=39 Identities=21% Similarity=0.263 Sum_probs=35.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 251 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~ 251 (602)
++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 99 ~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 99 YVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp EEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 889999999999999999999999988899988766553
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=95.98 E-value=0.003 Score=56.96 Aligned_cols=23 Identities=17% Similarity=0.127 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+|+.||||||+++.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0036 Score=58.19 Aligned_cols=23 Identities=30% Similarity=0.647 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|+|+.||||||+++.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999844
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0013 Score=62.00 Aligned_cols=26 Identities=38% Similarity=0.497 Sum_probs=23.1
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPA 239 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~ 239 (602)
+++|+|++||||||+++.|...+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 58999999999999999999887643
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=57.15 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=26.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCC---ceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPAD---GTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~---G~I~i~g 527 (602)
+++|+|++|||||||+..|++.++... |.|+.+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 589999999999999999998875432 4555543
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.94 E-value=0.0031 Score=57.96 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
..++|+|++||||||+.+.|+..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 78999999999999999999875
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0039 Score=60.57 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=21.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+.|+|++|||||||.+.|++.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~ 26 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETG 26 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCC
Confidence 589999999999999999998653
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.90 E-value=0.0035 Score=58.30 Aligned_cols=30 Identities=33% Similarity=0.539 Sum_probs=25.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.+++|+|++||||||+.+.|+.. |...+|.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 57999999999999999999985 5555553
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0034 Score=58.32 Aligned_cols=24 Identities=29% Similarity=0.559 Sum_probs=21.4
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+++|+|++||||||+.+.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 589999999999999999998553
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0014 Score=62.67 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+++|+|++||||||+.+.|+..+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999999543
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0066 Score=56.33 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=19.7
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|++|+|||||++.+.+
T Consensus 27 ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 27 KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp EEEEEEETTSSHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999987
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.81 E-value=0.0039 Score=56.66 Aligned_cols=23 Identities=35% Similarity=0.534 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998765
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.80 E-value=0.015 Score=59.64 Aligned_cols=24 Identities=25% Similarity=0.404 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.+....
T Consensus 45 ~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 45 SNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHHH
Confidence 568999999999999999998765
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0041 Score=56.49 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.4
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.|+|++||||||+.+.|+..+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5789999999999999999998664
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.0038 Score=57.48 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=19.9
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+||||||||||++.|...+
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 47899999999999999887544
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0053 Score=57.95 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=21.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHh
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
+-+|+|+|++||||||+++.|..
T Consensus 4 ~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 4 RYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0041 Score=60.44 Aligned_cols=24 Identities=25% Similarity=0.300 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|+|++|||||||.+.|++.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 358999999999999999998765
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=56.41 Aligned_cols=38 Identities=26% Similarity=0.501 Sum_probs=29.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhc----cCCCCc----eEEECCeec
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRI----IEPADG----TIIIDGVDI 530 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~----~~~~~G----~I~i~g~~i 530 (602)
-+|+++|++|+|||||++.+.+- +.|+.| ++.+++..+
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~~~~l 62 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQGFKL 62 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCSCCEEEEEETTEEEEEEEETTEEE
T ss_pred eEEEEECCCCCCHHHHHHHHhcCCCCcccCcCCeEEEEEEECCEEE
Confidence 36899999999999999999986 355667 556665433
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0046 Score=55.70 Aligned_cols=20 Identities=35% Similarity=0.566 Sum_probs=18.6
Q ss_pred ceEEEEeccCCChhHHHHHH
Q psy3001 213 ELVGIVGRTGAGKSSLTLAL 232 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll 232 (602)
.+++|+|++||||||+.+.|
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH
Confidence 36899999999999999999
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.72 E-value=0.075 Score=52.75 Aligned_cols=24 Identities=21% Similarity=0.506 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|.||+|+||||+++.++..+
T Consensus 68 ~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 68 LHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 458999999999999999988765
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.005 Score=55.43 Aligned_cols=19 Identities=37% Similarity=0.517 Sum_probs=18.1
Q ss_pred eEEEECCCCCChHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLAL 512 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L 512 (602)
.++|+|+.||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 5899999999999999999
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.008 Score=59.54 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
..+..+.|+|++||||||+.+.|+..++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3567899999999999999999987653 36677876
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=95.66 E-value=0.0015 Score=61.44 Aligned_cols=25 Identities=32% Similarity=0.411 Sum_probs=22.7
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
.++|+|++||||||+++.|...+++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 5899999999999999999988764
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0022 Score=64.90 Aligned_cols=33 Identities=30% Similarity=0.478 Sum_probs=27.6
Q ss_pred eeeEEeccee--EEEECCCCCChHHHHHHHHhccC
Q psy3001 485 VGLSVSYAMQ--VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 485 ~~l~i~~Ge~--v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+++.+..|++ +.|+|++||||||+.++|++.+.
T Consensus 15 l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 15 LDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp HHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4555667777 99999999999999999998653
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0045 Score=63.51 Aligned_cols=27 Identities=33% Similarity=0.423 Sum_probs=21.1
Q ss_pred EEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
|+|+|++|+|||||++.|+|...+..|
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~~~~~ 66 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDLYPER 66 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC----
T ss_pred EEEEcCCCCCHHHHHHHHhCCCCCCCC
Confidence 599999999999999999987554444
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.0098 Score=54.42 Aligned_cols=28 Identities=39% Similarity=0.586 Sum_probs=21.5
Q ss_pred eEEEEeccCCChhHHHHHHh-cc----cCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALF-RI----IEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~-g~----~~~~~G 241 (602)
.++|+|++|+|||||++.+. +. +.|+.|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~ 54 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG 54 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc
Confidence 48999999999999996554 44 455555
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=95.61 E-value=0.0061 Score=55.91 Aligned_cols=25 Identities=16% Similarity=0.239 Sum_probs=22.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
|..+.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998754
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.067 Score=55.87 Aligned_cols=22 Identities=36% Similarity=0.457 Sum_probs=20.7
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.||.|+|||+|++++++..
T Consensus 218 vLL~GPPGtGKTllAkAiA~e~ 239 (437)
T 4b4t_L 218 VLLYGPPGTGKTLLAKAVAATI 239 (437)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 8999999999999999999864
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0057 Score=55.52 Aligned_cols=23 Identities=35% Similarity=0.481 Sum_probs=20.8
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58999999999999999998754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0057 Score=57.75 Aligned_cols=22 Identities=32% Similarity=0.519 Sum_probs=20.7
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.+++|+|++||||||+.+.|+.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999999987
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.0061 Score=55.78 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|+|++||||||+.+.|+..+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998643
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0066 Score=55.88 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.5
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+.|+||+|||||||++.|....
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999997654
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.083 Score=55.14 Aligned_cols=22 Identities=27% Similarity=0.262 Sum_probs=20.6
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.||.|+|||+|++++++..
T Consensus 218 vLLyGPPGTGKTllAkAiA~e~ 239 (434)
T 4b4t_M 218 ALMYGPPGTGKTLLARACAAQT 239 (434)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEECcCCCCHHHHHHHHHHHh
Confidence 8999999999999999999864
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.029 Score=52.29 Aligned_cols=44 Identities=23% Similarity=0.371 Sum_probs=31.2
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTI 411 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i 411 (602)
++.++++||. ..+++.....+...+.....+..+|+++++...+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 145 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVSRI 145 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChhhc
Confidence 6789999996 5567777777777776654556677777766543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0098 Score=61.26 Aligned_cols=31 Identities=32% Similarity=0.667 Sum_probs=24.6
Q ss_pred eeeEEEEecCCceEEEEeccCCChhHHHHHHhc
Q psy3001 202 KDYKVRYREGLELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 202 ~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
++..+.+.+ .+.+|+|+|||||||++-+|.=
T Consensus 17 ~~~~i~f~~--gl~vi~G~NGaGKT~ileAI~~ 47 (371)
T 3auy_A 17 VNSRIKFEK--GIVAIIGENGSGKSSIFEAVFF 47 (371)
T ss_dssp EEEEEECCS--EEEEEEECTTSSHHHHHHHHHH
T ss_pred cceEEecCC--CeEEEECCCCCCHHHHHHHHHH
Confidence 445555544 6899999999999999999874
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.1 Score=52.44 Aligned_cols=24 Identities=29% Similarity=0.299 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.|.||.|+|||||++.++...
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHT
T ss_pred ceEEEECCCCccHHHHHHHHHHHc
Confidence 458999999999999999999865
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0062 Score=60.78 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+++|+|++|+|||||++.|.|.
T Consensus 9 ~~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 9 GFIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEEECSSSSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHHCC
Confidence 57999999999999999999986
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.46 E-value=0.0077 Score=54.89 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
-.++++|++|+|||||++.+.+-
T Consensus 17 ~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 17 VRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999975
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.008 Score=55.85 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=23.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|..++|+|+.||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999999876
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0073 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+..+.|+|++||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568999999999999999998755
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0068 Score=55.75 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=23.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+..+.|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 356689999999999999999998754
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0088 Score=61.04 Aligned_cols=35 Identities=40% Similarity=0.529 Sum_probs=28.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc-----------ccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR-----------IIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g-----------~~~~~~G~I~i~g 247 (602)
-.++|||.+|+|||||++.|.+ ...|..|.+.+++
T Consensus 3 ~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 3589999999999999999998 3456778777655
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.42 E-value=0.0074 Score=62.67 Aligned_cols=36 Identities=25% Similarity=0.170 Sum_probs=30.4
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
.+..+.|+|+|||||||+++.|++...+..+.|.+-
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 345689999999999999999998877777887763
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.006 Score=63.35 Aligned_cols=34 Identities=26% Similarity=0.181 Sum_probs=30.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
..++|+|+|||||||+++.+.+.+.+..+.|.+-
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~ 69 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIII 69 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEE
Confidence 5689999999999999999999888888888774
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.009 Score=59.16 Aligned_cols=33 Identities=33% Similarity=0.533 Sum_probs=26.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.++.|+|++||||||+.+.|+..++ .|.+.+++
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 6799999999999999999987553 35566654
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0071 Score=54.87 Aligned_cols=20 Identities=25% Similarity=0.507 Sum_probs=0.0
Q ss_pred eEEEEeccCCChhHHHHHHh
Q psy3001 214 LVGIVGRTGAGKSSLTLALF 233 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~ 233 (602)
++.|+|++||||||+.+.|+
T Consensus 4 ~I~i~G~~GsGKST~a~~L~ 23 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFI 23 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHH
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=95.38 E-value=0.0057 Score=55.78 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.1
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+..+.|+|++||||||+++.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 456679999999999999999998544
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0069 Score=59.39 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=21.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+++|++|||||||++.|+|..
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999974
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0073 Score=60.27 Aligned_cols=42 Identities=24% Similarity=0.293 Sum_probs=33.3
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCee
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 529 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~ 529 (602)
++.+.++..+.|.||+|+|||||++++++... .+-+.+++.+
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~~~ 84 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPE 84 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECHHH
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEhHH
Confidence 34556777899999999999999999999864 4566776543
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 602 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 5e-45 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 3e-25 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-44 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 2e-21 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-42 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 2e-19 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 5e-39 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-20 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 7e-39 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 8e-23 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 7e-33 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 9e-17 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 4e-22 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 5e-08 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-21 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-09 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 9e-21 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-09 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 7e-20 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 3e-06 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 1e-19 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 2e-07 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-19 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 1e-09 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-19 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 2e-04 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 5e-17 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 9e-06 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 7e-16 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 9e-06 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-15 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 0.002 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-15 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 3e-08 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 9e-15 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-04 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 9e-14 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 4e-06 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-11 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 1e-04 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-08 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 5e-06 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-05 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 2e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.004 | |
| d2qm8a1 | 323 | c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylo | 0.003 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 158 bits (401), Expect = 5e-45
Identities = 63/277 (22%), Positives = 119/277 (42%), Gaps = 52/277 (18%)
Query: 190 KDEWPEKGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRI 235
+ ++G ++ +Y + E V VG +G GKS+L + R
Sbjct: 8 QPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRF 67
Query: 236 IEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFF 295
+ G I+IDG +I+ +LR+++ ++ Q
Sbjct: 68 YDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQD--------------------------- 100
Query: 296 IQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTG 350
+++F++ VK I+ + V ++ + + P G ++G
Sbjct: 101 ---NILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSG 157
Query: 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNT 410
GQ+Q + +AR L ILILDEAT+A+DLE++ +IQ + T L +AHRL+T
Sbjct: 158 --GQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215
Query: 411 IIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
I +D+++V++ G +VE + L+ + + +
Sbjct: 216 ITHADKIVVIENGHIVETGTHRELIAKQ-GAYEHLYS 251
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 102 bits (257), Expect = 3e-25
Identities = 39/119 (32%), Positives = 67/119 (56%), Gaps = 1/119 (0%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ LS+ V VG +G GKS+L + R + G I+IDG +I+ +LR+++ +
Sbjct: 37 INLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGL 96
Query: 545 IPQDPVLFSGTLRLNL-DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ QD +LFS T++ N+ ++DE + +A ++A+ + F+ NLP EV E G L
Sbjct: 97 VQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 156 bits (396), Expect = 2e-44
Identities = 70/271 (25%), Positives = 124/271 (45%), Gaps = 51/271 (18%)
Query: 196 KGEVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADG 241
G++EF++ Y + V +VGR+G+GKS++ + R + +G
Sbjct: 11 TGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG 70
Query: 242 TIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLI 301
I++DG D+R L +LR+++ ++ Q V L
Sbjct: 71 HILMDGHDLREYTLASLRNQVALVSQ-----------------------------NVHLF 101
Query: 302 FTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQ 356
+ + +R ++ +++ I G ++G GQRQ
Sbjct: 102 NDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG--GQRQ 159
Query: 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDR 416
I +ARALLR + ILILDEAT+A+D E++ IQ+ + + T L IAHRL+TI +D
Sbjct: 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADE 219
Query: 417 VLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
++V++ G++VE + S L+ ++ + K
Sbjct: 220 IVVVEDGIIVERGTHSELLAQH-GVYAQLHK 249
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 91.8 bits (228), Expect = 2e-21
Identities = 35/120 (29%), Positives = 64/120 (53%), Gaps = 2/120 (1%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 544
+ L + V +VGR+G+GKS++ + R + +G I++DG D+R L +LR+++ +
Sbjct: 34 INLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVAL 93
Query: 545 IPQDPVLFSGTLRLN--LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+ Q+ LF+ T+ N E S E I +A +A+ F++ + L + E G L
Sbjct: 94 VSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 153
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 150 bits (381), Expect = 2e-42
Identities = 68/269 (25%), Positives = 123/269 (45%), Gaps = 51/269 (18%)
Query: 198 EVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
++ F++ + RY+ E++GIVGR+G+GKS+LT + R P +G +
Sbjct: 1 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQV 60
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+IDG D+ + LR ++ ++ Q +++
Sbjct: 61 LIDGHDLALADPNWLRRQVGVVLQD------------------------------NVLLN 90
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSP-----IYSHFGETVTGNVGQRQLI 358
+ I + ++ + +S I G ++G GQRQ I
Sbjct: 91 RSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSG--GQRQRI 148
Query: 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVL 418
+ARAL+ KILI DEAT+A+D E++ +I + TV+ IAHRL+T+ ++DR++
Sbjct: 149 AIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRII 208
Query: 419 VLDKGLVVEFDSPSVLMKNKASIFYSMAK 447
V++KG +VE L+ S++ + +
Sbjct: 209 VMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 85.7 bits (212), Expect = 2e-19
Identities = 37/109 (33%), Positives = 59/109 (54%), Gaps = 1/109 (0%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+GIVGR+G+GKS+LT + R P +G ++IDG D+ + LR ++ ++ QD VL +
Sbjct: 32 IGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNR 91
Query: 555 TLRLNLDPVGES-SDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
++ N+ S E + A +LA + F+S L V E G L
Sbjct: 92 SIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 140
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 141 bits (357), Expect = 5e-39
Identities = 59/254 (23%), Positives = 102/254 (40%), Gaps = 41/254 (16%)
Query: 199 VEFKDYKVRYREGL-------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245
+ + Y + ++ G +G GKS++ L R +P G I I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 246 DGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTED 305
DG I + L RS++ + Q A + +
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIR---------------------------E 94
Query: 306 VKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTG-NVGQRQLICLARAL 364
+ ++ + V + + + GE + GQRQ + +ARA
Sbjct: 95 NLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAF 154
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGL 424
LR KIL+LDEATA++D E++ ++Q + S T L IAHRL+TI+D+D++ ++KG
Sbjct: 155 LRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQ 214
Query: 425 VVEFDSPSVLMKNK 438
+ + L+
Sbjct: 215 ITGSGKHNELVATH 228
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 89.2 bits (221), Expect = 1e-20
Identities = 40/110 (36%), Positives = 61/110 (55%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ G +G GKS++ L R +P G I IDG I + L RS++ + QD + +G
Sbjct: 31 IAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAG 90
Query: 555 TLRLNLD--PVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T+R NL G+ +DE +W+ L+LA +FV N+P +L EV E G +
Sbjct: 91 TIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 141 bits (356), Expect = 7e-39
Identities = 60/270 (22%), Positives = 109/270 (40%), Gaps = 44/270 (16%)
Query: 193 WPEKGEVEFKDYKVRYREGL---------------ELVGIVGRTGAGKSSLTLALFRIIE 237
+G V+F+D Y E+ +VG G+GKS++ L + +
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 238 PADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQ 297
P G +++DG + L ++ + Q + S+ I
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQ---------------EPQVFGRSL-QENIA 109
Query: 298 VSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357
L ++ + S F + L + + G ++G GQRQ
Sbjct: 110 YGLTQKPTMEEITAAAVKSGAHSF-------ISGLPQGYDTEV-DEAGSQLSG--GQRQA 159
Query: 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIR--SEFAHCTVLTIAHRLNTIIDSD 415
+ LARAL+RK +LILD+AT+A+D + ++ + E +VL I L+ + +D
Sbjct: 160 VALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQAD 219
Query: 416 RVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
+L L+ G + E + LM+ K +++M
Sbjct: 220 HILFLEGGAIREGGTHQQLMEKK-GCYWAM 248
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 95.7 bits (238), Expect = 8e-23
Identities = 29/110 (26%), Positives = 53/110 (48%), Gaps = 2/110 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+VG G+GKS++ L + +P G +++DG + L ++ + Q+P +F
Sbjct: 43 TALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGR 102
Query: 555 TLRLNL--DPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
+L+ N+ + + E I A + ++F+S LP EV E G L
Sbjct: 103 SLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 152
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 125 bits (315), Expect = 7e-33
Identities = 50/298 (16%), Positives = 104/298 (34%), Gaps = 64/298 (21%)
Query: 166 VAVERI-----KEYGETPQEAEWVNDKKPKDEWPEKGEVEFKDYKVRYREGL-------- 212
+ +E + + +GE ++ + + ++ V F + L
Sbjct: 3 IIMENVTAFWEEGFGELLEKVQ--QSNGDRKHSSDENNVSFSHLCLVGNPVLKNINLNIE 60
Query: 213 --ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLA 270
E++ I G TG+GK+SL + + +E ++G I G R++ Q
Sbjct: 61 KGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF-- 105
Query: 271 TIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLK 330
S I +K II + R+
Sbjct: 106 ----------------------------SWIMPGTIKENIIFGVSYDEYRYKSVVKACQL 137
Query: 331 RLESVSRSPIYSHFGETVTGN--VGQRQLICLARALLRKTKILILDEATAAIDLET-DDL 387
+ + + + GQR I LARA+ + + +LD +D+ T + +
Sbjct: 138 QQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQV 197
Query: 388 IQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMKNKASIFYSM 445
+S + A+ T + + ++ + +D++L+L +G + + S L + F S
Sbjct: 198 FESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQ-SLRPDFSSK 254
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.8 bits (194), Expect = 9e-17
Identities = 22/108 (20%), Positives = 43/108 (39%), Gaps = 13/108 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ I G TG+GK+SL + + +E ++G I G R++ Q + G
Sbjct: 65 LAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPG 111
Query: 555 TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602
T++ N+ + ++ L ++ + + EGG L
Sbjct: 112 TIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 159
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 93.1 bits (231), Expect = 4e-22
Identities = 38/257 (14%), Positives = 81/257 (31%), Gaps = 56/257 (21%)
Query: 199 VEFKDYKVRYR---------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVD 249
++ +D R G E++ +VG GAGKS+L + + G+I G
Sbjct: 4 MQLQDVAESTRLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQP 61
Query: 250 IRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL 309
+ L + Q F
Sbjct: 62 LEAWSATKLALHRAYLSQQQTPPF----------------------------------AT 87
Query: 310 IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKT- 368
+ + + Q T +++ ++G G+ Q + LA +L+ T
Sbjct: 88 PVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSG--GEWQRVRLAAVVLQITP 145
Query: 369 ------KILILDEATAAIDLETDDLIQSTIRS-EFAHCTVLTIAHRLNTIID-SDRVLVL 420
++L+LDE ++D+ + + + ++ +H LN + + R +L
Sbjct: 146 QANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLL 205
Query: 421 DKGLVVEFDSPSVLMKN 437
G ++ ++
Sbjct: 206 KGGKMLASGRREEVLTP 222
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 51.9 bits (124), Expect = 5e-08
Identities = 18/100 (18%), Positives = 34/100 (34%), Gaps = 4/100 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDP-VLFS 553
+ +VG GAGKS+L + + G+I G + L + Q F+
Sbjct: 28 LHLVGPNGAGKSTLLARMAGM-TSGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFA 86
Query: 554 GTLRLNLDPV--GESSDEAIWKALELAHLNTFVSNLPARL 591
+ L ++ E + L+ + +L
Sbjct: 87 TPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQL 126
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 90.7 bits (225), Expect = 3e-21
Identities = 47/219 (21%), Positives = 86/219 (39%), Gaps = 29/219 (13%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V I+G +G+GKS++ + + +P +G + ID + L L
Sbjct: 32 EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTK------------ 79
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
I + + F Q +LI + P + R+ + L
Sbjct: 80 -------------IRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRAL 126
Query: 333 ESVSRSPIYSHFGETVTGNV--GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQS 390
E + + + F + GQ+Q + +ARAL I++ D+ T A+D +T + I
Sbjct: 127 ECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQ 186
Query: 391 TIRS--EFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427
++ E TV+ + H +N +R++ L G V
Sbjct: 187 LLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 55.2 bits (133), Expect = 3e-09
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 15/129 (11%)
Query: 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RS 540
V L++ V I+G +G+GKS++ + + +P +G + ID + L L R
Sbjct: 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRD 83
Query: 541 RLTIIPQDPVLFSG---------TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
++ + Q L L S +E +ALE +
Sbjct: 84 KIGFVFQQFNLIPLLTALENVELPLIFKYRG-AMSGEERRKRALECLKMAELEERFANHK 142
Query: 592 QHEVSEGGE 600
+++S GG+
Sbjct: 143 PNQLS-GGQ 150
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 89.6 bits (222), Expect = 9e-21
Identities = 52/236 (22%), Positives = 100/236 (42%), Gaps = 37/236 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQVL 269
++ G++G +GAGKS+L + + P +G++++DG ++ TL R ++ +I Q
Sbjct: 32 QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQ-- 89
Query: 270 ATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQL 329
+L+ + V + P + R
Sbjct: 90 ---------------------------HFNLLSSRTVFGNVALPLELDNTPKDEVKRRVT 122
Query: 330 KRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQ 389
+ L V + + ++G GQ+Q + +ARAL K+L+ DEAT+A+D T I
Sbjct: 123 ELLSLVGLGDKHDSYPSNLSG--GQKQRVAIARALASNPKVLLCDEATSALDPATTRSIL 180
Query: 390 STIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
++ T+L I H ++ + D V V+ G ++E D+ S + + +
Sbjct: 181 ELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 54.5 bits (131), Expect = 6e-09
Identities = 31/116 (26%), Positives = 52/116 (44%), Gaps = 14/116 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVL 551
G++G +GAGKS+L + + P +G++++DG ++ TL R ++ +I Q L
Sbjct: 34 YGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL 93
Query: 552 FS-----GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
S G + L L+ DE + EL L L + S GG+
Sbjct: 94 LSSRTVFGNVALPLELDNTPKDEVKRRVTELLSL----VGLGDKHDSYPSNLSGGQ 145
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 87.3 bits (216), Expect = 7e-20
Identities = 46/235 (19%), Positives = 92/235 (39%), Gaps = 22/235 (9%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQ 267
+G ++ I+G G+GKS+L + ++ +G + + DI L + Q
Sbjct: 28 NKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQ 86
Query: 268 VLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR 327
+ V +++ SL + + + + +
Sbjct: 87 TPQPLK----EMTVLENLLIGEICPGESPLNSLFYKKWIP------------KEEEMVEK 130
Query: 328 QLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDL 387
K LE + S +Y ++G GQ +L+ + RAL+ K++++DE A +
Sbjct: 131 AFKILEFLKLSHLYDRKAGELSG--GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHD 188
Query: 388 IQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKAS 440
I + + A T L I HRL+ +++ D + V+ G ++ +KN S
Sbjct: 189 IFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIKNVLS 243
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 46.5 bits (110), Expect = 3e-06
Identities = 13/59 (22%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLF 552
I+G G+GKS+L + ++ +G + + DI L + Q P
Sbjct: 33 TLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 86.0 bits (213), Expect = 1e-19
Identities = 44/261 (16%), Positives = 101/261 (38%), Gaps = 50/261 (19%)
Query: 198 EVEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244
EV+ ++ R+ ++G E + ++G +G GK++ + + EP +G I
Sbjct: 6 EVKLENLTKRFGNFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 245 IDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTE 304
D+ L ++++ Q ++
Sbjct: 65 FGDRDVTYLPPK--DRNISMVFQ-----------------------------SYAVWPHM 93
Query: 305 DVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARAL 364
V I P R E + + + + ++G GQRQ + +ARA+
Sbjct: 94 TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSG--GQRQRVAVARAI 151
Query: 365 LRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLD 421
+ + +L++DE + +D + +++ I+ + T + + H + DR+ V++
Sbjct: 152 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMN 211
Query: 422 KGLVVEFDSPSVLMKNKASIF 442
+G +++ SP+ + S+F
Sbjct: 212 RGQLLQIGSPTEVYLRPNSVF 232
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 50.2 bits (120), Expect = 2e-07
Identities = 19/114 (16%), Positives = 41/114 (35%), Gaps = 14/114 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
+ ++G +G GK++ + + EP +G I D+ L ++++ Q ++
Sbjct: 35 LVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPH 92
Query: 555 -----TLRLNLDPVGESSDEAIWKALELA-------HLNTFVSNLPARLQHEVS 596
+ L DE + A LN + + L + V+
Sbjct: 93 MTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVA 146
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 85.3 bits (211), Expect = 3e-19
Identities = 46/234 (19%), Positives = 96/234 (41%), Gaps = 22/234 (9%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
+++ I+G +G+GKS+ + + +P++G II++G +I + + ++ Q+
Sbjct: 29 DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQL---- 84
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFY-VATSRQLKR 331
++ + F +L V ++ L A R LK
Sbjct: 85 ------------RLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKY 132
Query: 332 LESVSRSP-IYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAID-LETDDLIQ 389
L V + ++ GQ+Q + +ARAL + +L+ DE T+A+D ++++
Sbjct: 133 LAKVGIDERAQGKYPVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLR 190
Query: 390 STIRSEFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T++ + H + S V+ L +G + E P + N S
Sbjct: 191 IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPR 244
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 57.2 bits (138), Expect = 1e-09
Identities = 28/123 (22%), Positives = 54/123 (43%), Gaps = 19/123 (15%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG-------------LHTLRSR 541
+ I+G +G+GKS+ + + +P++G II++G +I + L LR+R
Sbjct: 31 ISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTR 90
Query: 542 LTIIPQDPVLFS------GTLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEV 595
LT++ Q L+S + + +G S +A +AL+ + +
Sbjct: 91 LTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHL 150
Query: 596 SEG 598
S G
Sbjct: 151 SGG 153
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 84.6 bits (209), Expect = 4e-19
Identities = 40/233 (17%), Positives = 86/233 (36%), Gaps = 30/233 (12%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E + ++G +G GK++ + + EP+ G I I +
Sbjct: 30 EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP----------- 78
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ F +L V I P R +
Sbjct: 79 --------------KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVA 124
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + + + + ++G GQRQ + L RA++RK ++ ++DE + +D + +++ +
Sbjct: 125 ELLGLTELLNRKPRELSG--GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAEL 182
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T + + H + DR+ V+++G++ + SP + A+ F
Sbjct: 183 KKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 41.5 bits (97), Expect = 2e-04
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 15/117 (12%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR----SRLTIIPQDPV 550
+ ++G +G GK++ + + EP+ G I I + + ++ Q
Sbjct: 32 MILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA 91
Query: 551 LFSGTLRLN-----LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
L+ + L E + E+A L L L + E GG+
Sbjct: 92 LYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAEL----LGLTELLNRKPRELSGGQ 144
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 78.5 bits (193), Expect = 5e-17
Identities = 41/233 (17%), Positives = 80/233 (34%), Gaps = 36/233 (15%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E V VG +G GKS+L + + G + I + + ++ Q
Sbjct: 27 EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQ----- 79
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+L V + + V R +
Sbjct: 80 ------------------------SYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
E + + + + ++G GQRQ + + R L+ + + +LDE + +D ++ I
Sbjct: 116 EVLQLAHLLDRKPKALSG--GQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEI 173
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ T++ + H + +D+++VLD G V + P L A F
Sbjct: 174 SRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRF 226
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 44.9 bits (106), Expect = 9e-06
Identities = 19/109 (17%), Positives = 39/109 (35%), Gaps = 8/109 (7%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V VG +G GKS+L + + G + I + + ++ Q L+
Sbjct: 29 VVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMN--DTPPAERGVGMVFQSYALYPH 86
Query: 555 T-----LRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
+ L G + + ++A + +++L R +S G
Sbjct: 87 LSVAENMSFGLKLAGAKKEVINQRVNQVAEV-LQLAHLLDRKPKALSGG 134
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 75.4 bits (185), Expect = 7e-16
Identities = 44/256 (17%), Positives = 100/256 (39%), Gaps = 48/256 (18%)
Query: 197 GEVEFKDYKVRY-------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
G V KD + R EG E+ G++G GAGK++ + +I+P+ G +
Sbjct: 1 GAVVVKDLRKRIGKKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 59
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
+ G ++ H +R ++ +P+ + + + V+ +
Sbjct: 60 TVFGKNVVEE-PHEVRKLISYLPEEAG--------------AYRNMQGIEYLRFVAGFYA 104
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARA 363
+ V + ++ L + + ++ + G + + +ARA
Sbjct: 105 SSSSEI----------EEMVERATEIAGLGEKIKDRVSTY-------SKGMVRKLLIARA 147
Query: 364 LLRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLD 421
L+ ++ ILDE T+ +D+ ++ ++ T+L +H + + DR+ ++
Sbjct: 148 LMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIH 207
Query: 422 KGLVVEFDSPSVLMKN 437
G +VE + L +
Sbjct: 208 NGTIVETGTVEELKER 223
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 45.0 bits (106), Expect = 9e-06
Identities = 22/107 (20%), Positives = 47/107 (43%), Gaps = 9/107 (8%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
G++G GAGK++ + +I+P+ G + + G ++ H +R ++ +P++ +
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRN 89
Query: 555 -----TLRLNLDPVGESSDEA---IWKALELAHLNTFVSNLPARLQH 593
LR SS E + +A E+A L + + +
Sbjct: 90 MQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSK 136
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 74.6 bits (183), Expect = 1e-15
Identities = 40/235 (17%), Positives = 84/235 (35%), Gaps = 33/235 (14%)
Query: 209 REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQV 268
G ++V ++G GAGK++ A+ ++ G II +G DI H + +
Sbjct: 30 PRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVP- 87
Query: 269 LATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQ 328
+F + V +++ ++R
Sbjct: 88 --------EGRRIFPELTVYENLMM--------------GAYNRKDKEGIKRDLEWIFSL 125
Query: 329 LKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLI 388
RL+ + + G G++Q++ + RAL+ + K+L++DE + + +
Sbjct: 126 FPRLKERLKQLGGTLSG-------GEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 389 QSTIRSEFA-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASI 441
I+ T+L + + + VL+ G +V S L+ N+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 233
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 38.0 bits (88), Expect = 0.002
Identities = 26/110 (23%), Positives = 45/110 (40%), Gaps = 4/110 (3%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTI-IPQDPVLFS 553
V ++G GAGK++ A+ ++ G II +G DI H + +P+ +F
Sbjct: 35 VTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFP 94
Query: 554 G-TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSE--GGE 600
T+ NL + + +L + + L RL+ GGE
Sbjct: 95 ELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGE 144
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 72.7 bits (178), Expect = 5e-15
Identities = 53/248 (21%), Positives = 96/248 (38%), Gaps = 40/248 (16%)
Query: 196 KGEVEFKDYK--VRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTL 253
+ E +++ V + G + ++G TGAGKS + I++P G + ++G DI L
Sbjct: 6 RAEKRLGNFRLNVDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPL 65
Query: 254 GLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP 313
R + +PQ A +F + + V
Sbjct: 66 PPE--RRGIGFVPQDYA-LFPHLSVYRNIAYGLRNVE----------------------- 99
Query: 314 FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373
R + E + + + ++ G+RQ + LARAL+ + ++L+L
Sbjct: 100 -------RVERDRRVREMAEKLGIAHLLDRKPARLS--GGERQRVALARALVIQPRLLLL 150
Query: 374 DEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430
DE +A+DL+T ++ +R +L + H L +D V V+ G +VE
Sbjct: 151 DEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210
Query: 431 PSVLMKNK 438
L K
Sbjct: 211 LKELFSAK 218
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 52.7 bits (126), Expect = 3e-08
Identities = 27/107 (25%), Positives = 41/107 (38%), Gaps = 6/107 (5%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
++G TGAGKS + I++P G + ++G DI L R + +PQD LF
Sbjct: 27 CVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPH 84
Query: 555 TLRLN---LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEG 598
E + E+A +L R +S G
Sbjct: 85 LSVYRNIAYGLRNVERVERDRRVREMAEKLGIA-HLLDRKPARLSGG 130
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 72.0 bits (176), Expect = 9e-15
Identities = 54/264 (20%), Positives = 94/264 (35%), Gaps = 49/264 (18%)
Query: 198 EVEFKDYKVRYREGL--------------ELVGIVGRTGAGKSSLTLALFRIIEPADGTI 243
+ K+ +++G E GI+G +GAGK++ + + P+ G +
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 244 IIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFT 303
D + + G + I V T + T
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENI------------------- 103
Query: 304 EDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGN--VGQRQLICLA 361
L ++ KR+E V++ H Q+Q + LA
Sbjct: 104 -----------AFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALA 152
Query: 362 RALLRKTKILILDEATAAIDLETDDLIQSTIRS--EFAHCTVLTIAHRLNTIID-SDRVL 418
RAL++ +L+LDE + +D D ++ ++ T+L ++H I +DRV
Sbjct: 153 RALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVG 212
Query: 419 VLDKGLVVEFDSPSVLMKNKASIF 442
VL KG +V+ P L N SI
Sbjct: 213 VLVKGKLVQVGKPEDLYDNPVSIQ 236
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR---LTIIPQDPVL 551
GI+G +GAGK++ + + P+ G + D + + G + + ++ Q L
Sbjct: 34 FGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWAL 93
Query: 552 F 552
+
Sbjct: 94 Y 94
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 68.0 bits (166), Expect = 9e-14
Identities = 44/237 (18%), Positives = 82/237 (34%), Gaps = 57/237 (24%)
Query: 200 EFKDYKVRY------------REGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247
E +D V Y +G +V G G GK++L + ++P G II +G
Sbjct: 4 EIRDLSVGYDKPVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNG 62
Query: 248 VDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVK 307
V I ++ ++ +P+ + + + +K
Sbjct: 63 VPI-----TKVKGKIFFLPE-------------------------EIIVPRKISVEDYLK 92
Query: 308 PLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRK 367
++L V + + LESV + GE + G + + LA LL
Sbjct: 93 ------AVASLYGVKVNKNEIMDALESVEVLDLKKKLGEL---SQGTIRRVQLASTLLVN 143
Query: 368 TKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIIDSDRVLVLDK 422
+I +LD+ AID ++ + +I +++ L+ D L K
Sbjct: 144 AEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 45.7 bits (108), Expect = 4e-06
Identities = 20/92 (21%), Positives = 39/92 (42%), Gaps = 11/92 (11%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
V G G GK++L + ++P G II +GV I ++ ++ +P++ ++
Sbjct: 30 VNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPI-----TKVKGKIFFLPEEIIVPRK 84
Query: 555 -TLRLNLDPVGE-----SSDEAIWKALELAHL 580
++ L V + I ALE +
Sbjct: 85 ISVEDYLKAVASLYGVKVNKNEIMDALESVEV 116
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 62.8 bits (152), Expect = 1e-11
Identities = 47/233 (20%), Positives = 86/233 (36%), Gaps = 39/233 (16%)
Query: 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272
E I+G TGAGK+ + P G I++DG D+ L + + + Q +
Sbjct: 27 EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYS-- 82
Query: 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRL 332
+ P + ++ + + P R L
Sbjct: 83 -------------LFPHMNVKKNLEFGMRMKKIKDP-----------------KRVLDTA 112
Query: 333 ESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTI 392
+ + T++ G++Q + LARAL+ KIL+LDE +A+D T + + +
Sbjct: 113 RDLKIEHLLDRNPLTLS--GGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREML 170
Query: 393 RS--EFAHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLMKNKASIF 442
+ TVL I H +DR+ V+ G +++ P + +
Sbjct: 171 SVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 41.6 bits (97), Expect = 1e-04
Identities = 20/102 (19%), Positives = 35/102 (34%), Gaps = 7/102 (6%)
Query: 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG 554
I+G TGAGK+ + P G I++DG D+ L + + + Q+ LF
Sbjct: 29 FVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT--DLSPEKHDIAFVYQNYSLFPH 86
Query: 555 -----TLRLNLDPVGESSDEAIWKALELAHLNTFVSNLPARL 591
L + + + + + P L
Sbjct: 87 MNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 50.8 bits (120), Expect = 5e-08
Identities = 11/80 (13%), Positives = 23/80 (28%)
Query: 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLF 552
M++ I G G GK++L + + + V T +T + +
Sbjct: 1 MKIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFS 60
Query: 553 SGTLRLNLDPVGESSDEAIW 572
S + +
Sbjct: 61 SKFFTSKKLVGSYGVNVQYF 80
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 45.0 bits (105), Expect = 5e-06
Identities = 8/75 (10%), Positives = 19/75 (25%)
Query: 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412
A + K++I+DE + V+ +
Sbjct: 85 IPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHP 144
Query: 413 DSDRVLVLDKGLVVE 427
+ L +++E
Sbjct: 145 LVKEIRRLPGAVLIE 159
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 43.1 bits (100), Expect = 2e-05
Identities = 9/53 (16%), Positives = 17/53 (32%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQ 267
+ I G G GK++L + + + V T +T +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGK 55
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.8 bits (94), Expect = 2e-04
Identities = 9/72 (12%), Positives = 21/72 (29%)
Query: 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVL 551
A V + G G GK++L +++ + + + G + + +
Sbjct: 1 ARHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGP 60
Query: 552 FSGTLRLNLDPV 563
S
Sbjct: 61 LSRVGLEPPPGK 72
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.5 bits (83), Expect = 0.004
Identities = 20/194 (10%), Positives = 50/194 (25%), Gaps = 25/194 (12%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFV 274
V + G G GK++L +++ + + + G + + + +
Sbjct: 4 VFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSR 63
Query: 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES 334
+ P + + +L F L+ +
Sbjct: 64 VGLEPPPGKR-----------------------ECRVGQYVVDLTSFEQLALPVLRNADC 100
Query: 335 VSRSPIYSHFGETVTGN-VGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIR 393
S + + + + I R L +IL + L++
Sbjct: 101 SSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKG-KPLALVEEIRN 159
Query: 394 SEFAHCTVLTIAHR 407
+ +T +R
Sbjct: 160 RKDVKVFNVTKENR 173
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} Length = 323 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Score = 37.6 bits (86), Expect = 0.003
Identities = 18/110 (16%), Positives = 37/110 (33%), Gaps = 3/110 (2%)
Query: 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT-LGLHTLRSRLTIIPQVLATIF 273
VGI G G GKS+ AL ++ A + + VD + ++ T + ++
Sbjct: 54 VGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRN 113
Query: 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYV 323
+P + + + + DV +++ V
Sbjct: 114 AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDV--ILVETVGVGQSETAV 161
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 602 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.95 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.95 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.94 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.94 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.93 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.87 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.86 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.86 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.86 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.86 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.86 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.85 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.85 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.84 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.81 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.81 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.8 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.79 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.73 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.72 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.67 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.58 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 98.99 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.87 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 98.84 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 98.55 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 98.35 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 97.88 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 97.43 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.34 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.18 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.01 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.97 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.95 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.9 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.83 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.82 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.8 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.77 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.77 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.67 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.63 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.6 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.59 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.54 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.54 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.53 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.53 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.52 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.52 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.51 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.49 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.48 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.48 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 96.43 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.42 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.42 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.39 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.36 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.34 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 96.33 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.32 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.32 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.31 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.31 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.31 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.3 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.27 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.27 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.27 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.25 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.23 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.2 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.19 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.19 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.17 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.16 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.08 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.08 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.08 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 96.07 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.06 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.06 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.03 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.03 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.99 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.96 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.96 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.95 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.94 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.93 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.93 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.89 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.83 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.82 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.81 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 95.81 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.78 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.78 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.77 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.74 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.7 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.69 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 95.69 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.68 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.65 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.65 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 95.65 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.63 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 95.62 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.6 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.59 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.55 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.55 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.55 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.54 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.54 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.53 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.53 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.52 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.5 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.47 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.47 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 95.47 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.46 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.45 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.44 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 95.43 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.43 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 95.42 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.41 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 95.4 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.38 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 95.38 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 95.37 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.37 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 95.32 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.32 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.3 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 95.29 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 95.25 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.22 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.21 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 95.2 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 95.18 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.17 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.16 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.16 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 95.16 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 95.13 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 95.11 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.11 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 95.1 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 95.1 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.08 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 95.07 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.06 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.02 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 95.02 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 95.02 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 95.02 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 95.0 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.98 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.97 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 94.93 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.92 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.89 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.85 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.84 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.82 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.79 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.76 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.75 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.75 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.75 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.73 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.71 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 94.71 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 94.68 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.65 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.64 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.63 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.61 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.61 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.55 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.54 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 94.51 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 94.51 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 94.51 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.5 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.46 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 94.45 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 94.43 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 94.43 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 94.37 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 94.36 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 94.35 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.35 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 94.35 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.33 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.33 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.29 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.25 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 94.23 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.22 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 94.2 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.12 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 94.09 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 94.07 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.05 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.05 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 94.0 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.98 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 93.87 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.85 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.77 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.73 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 93.7 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 93.67 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.61 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.6 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 93.54 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 93.54 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.51 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.45 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.45 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.44 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.41 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.4 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 93.39 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 93.38 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 93.38 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 93.36 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.35 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.34 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 93.28 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 93.28 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 93.26 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.24 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 93.21 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.21 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 93.21 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 93.19 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 93.18 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.18 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.17 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.14 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 93.14 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 93.13 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.13 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 93.13 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 93.11 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.01 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 93.01 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 92.98 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 92.97 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 92.97 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 92.93 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.9 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.85 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 92.85 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.85 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 92.84 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.83 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 92.76 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.73 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 92.72 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.7 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 92.69 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 92.66 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.66 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.65 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.63 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 92.63 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 92.63 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.62 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 92.61 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.61 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 92.6 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.59 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 92.58 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.58 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 92.56 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 92.53 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 92.53 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.53 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 92.51 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.5 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 92.47 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 92.45 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 92.44 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 92.43 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.41 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 92.4 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 92.38 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.37 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.34 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 92.3 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.28 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 92.18 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 92.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 92.16 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 92.16 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.15 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 92.1 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 92.1 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.08 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 92.06 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 92.04 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 92.03 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 92.02 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 92.01 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.01 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.93 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.93 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 91.89 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.82 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.82 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.81 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 91.8 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 91.79 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 91.79 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 91.79 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.76 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 91.7 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.7 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.69 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 91.66 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.65 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 91.65 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 91.63 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 91.62 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 91.61 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 91.6 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.57 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 91.5 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.49 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 91.49 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 91.46 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.39 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.37 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 91.37 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 91.32 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.28 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 91.27 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 91.27 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 91.26 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 91.25 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 91.23 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 91.22 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 91.21 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 91.21 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 91.09 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 90.99 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.97 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 90.95 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 90.91 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 90.9 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.89 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 90.84 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 90.83 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.82 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 90.81 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 90.8 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.79 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 90.72 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 90.71 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.71 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 90.69 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 90.68 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.64 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 90.62 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 90.58 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.56 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 90.54 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 90.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 90.45 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.43 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 90.33 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.31 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 90.3 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 90.25 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 90.2 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 90.13 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 90.06 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 90.01 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 89.98 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 89.93 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 89.88 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 89.82 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.82 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.73 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.69 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.68 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.6 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 89.47 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 89.46 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 89.4 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 89.17 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 88.96 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 88.94 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 88.8 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.61 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 88.37 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 88.13 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 87.89 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 87.81 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 87.67 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.51 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 87.49 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 87.29 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 87.21 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.07 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 87.01 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.79 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 86.7 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 86.69 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 86.63 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 86.52 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 86.42 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 86.39 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 86.18 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 86.01 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 85.86 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 85.43 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 85.43 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 85.3 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 84.66 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 84.57 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.52 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 84.5 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 84.22 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 84.11 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 83.98 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.77 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 83.6 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 83.53 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 83.43 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 83.39 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 83.2 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 83.17 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 83.01 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 83.01 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 82.4 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 82.09 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 82.02 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 81.83 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 81.59 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 81.39 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 81.34 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 81.24 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 81.22 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.9e-48 Score=376.12 Aligned_cols=222 Identities=31% Similarity=0.490 Sum_probs=176.5
Q ss_pred CCCCCcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhh
Q psy3001 193 WPEKGEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATI 272 (602)
Q Consensus 193 ~~~~~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~ 272 (602)
|+......++||||++++| +++||+|+||||||||+++|+|+++|++|+|.+||+|+..++...+|++|+||||+
T Consensus 11 Y~~~~~~vL~~isl~i~~G-e~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~---- 85 (241)
T d2pmka1 11 YKPDSPVILDNINLSIKQG-EVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQD---- 85 (241)
T ss_dssp SSTTSCEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSS----
T ss_pred eCCCCcceEeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecc----
Confidence 3344556899999999998 99999999999999999999999999999999999999999999999999999998
Q ss_pred hhhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHH--HHHHHHHHhh--cccCCcccccCCc
Q psy3001 273 FVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVA--TSRQLKRLES--VSRSPIYSHFGET 347 (602)
Q Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--~~~~~~~l~~--~~~~~~~~~~~~~ 347 (602)
|++| .+++..| +.... .....+.... .....+.+.. .+....+++.|..
T Consensus 86 -------~~lf-------------~~Ti~eN------i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~ 139 (241)
T d2pmka1 86 -------NVLL-------------NRSIIDN------ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAG 139 (241)
T ss_dssp -------CCCT-------------TSBHHHH------HCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTC
T ss_pred -------cccC-------------Ccccccc------ccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCc
Confidence 4333 2332222 11111 1111111111 1111111111 1223346667788
Q ss_pred CCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEe
Q psy3001 348 VTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVE 427 (602)
Q Consensus 348 lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~ 427 (602)
+| |||||||+|||||+++|+|||||||||+||+.++..+.+.++++.+++|+|+||||++.+..||||++|++|+|++
T Consensus 140 LS--GGq~QRvalARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~ 217 (241)
T d2pmka1 140 LS--GGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVE 217 (241)
T ss_dssp CC--HHHHHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEE
T ss_pred cC--HHHHHHHhhhhhhhcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEE
Confidence 88 5999999999999999999999999999999999999999999888999999999999998899999999999999
Q ss_pred ecChhHHhhcchhHHHHHHH
Q psy3001 428 FDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 428 ~g~~~~l~~~~~~~~~~~~~ 447 (602)
.|++++++++++..|..+++
T Consensus 218 ~G~~~ell~~~~~~y~~l~~ 237 (241)
T d2pmka1 218 QGKHKELLSEPESLYSYLYQ 237 (241)
T ss_dssp EECHHHHHHSTTCHHHHHHH
T ss_pred ECCHHHHHhCCCCHHHHHHH
Confidence 99999999887777776664
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.9e-47 Score=371.33 Aligned_cols=216 Identities=30% Similarity=0.463 Sum_probs=165.6
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTP 280 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~ 280 (602)
++||||++++| +++|||||||||||||+++|+|+++|++|+|.+||.++..++...+|+.++|+||+ |
T Consensus 31 L~~isl~i~~G-e~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~-----------~ 98 (253)
T d3b60a1 31 LRNINLKIPAG-KTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQN-----------V 98 (253)
T ss_dssp EEEEEEEECTT-CEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSS-----------C
T ss_pred eeceEEEEcCC-CEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeec-----------c
Confidence 44444444444 88999999999999999999999999999999999999999999999999999998 4
Q ss_pred eeEeeecccceeeeccccceeecccccccccccccchhHHHHHH--HHHHHHHHhhc--ccCCcccccCCcCCCChhhHH
Q psy3001 281 VFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVA--TSRQLKRLESV--SRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
.+| ..++..|..... ......++.... .....+.++.+ +....+++.+.+|| |||||
T Consensus 99 ~l~-------------~~ti~~n~~~~~----~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LS--GGqkQ 159 (253)
T d3b60a1 99 HLF-------------NDTVANNIAYAR----TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS--GGQRQ 159 (253)
T ss_dssp CCC-------------SSBHHHHHHTTT----TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC--HHHHH
T ss_pred ccC-------------CcchhhhhhhcC----cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcC--HHHHH
Confidence 444 222222211100 000011111111 01111111111 23445667788888 59999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhHHhh
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSVLMK 436 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~l~~ 436 (602)
||+|||||+++|++||||||||+||+.++..+.+.|+++.+++|+|+||||++.+..||+|++|++|+|++.|+|+++++
T Consensus 160 RvaiARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~ 239 (253)
T d3b60a1 160 RIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA 239 (253)
T ss_dssp HHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999999999888999999999999998899999999999999999999998
Q ss_pred cchhHHHHHHHh
Q psy3001 437 NKASIFYSMAKD 448 (602)
Q Consensus 437 ~~~~~~~~~~~~ 448 (602)
+ .+.|..+++.
T Consensus 240 ~-~~~y~~l~~~ 250 (253)
T d3b60a1 240 Q-HGVYAQLHKM 250 (253)
T ss_dssp H-TSSHHHHHHH
T ss_pred C-CcHHHHHHHH
Confidence 6 5667766653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4e-47 Score=369.92 Aligned_cols=213 Identities=25% Similarity=0.394 Sum_probs=163.5
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++|+||++.+| +++|||||||||||||+++|+|+++|++|+|.+||+++..++...+|+++++|+|+
T Consensus 29 vL~~isl~i~~G-e~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~----------- 96 (251)
T d1jj7a_ 29 VLQGLTFTLRPG-EVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQE----------- 96 (251)
T ss_dssp SEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSS-----------
T ss_pred eEeceEEEEcCC-CEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhcccc-----------
Confidence 345555555555 88999999999999999999999999999999999999999999999999999998
Q ss_pred ceeEeeecccceeeeccccceeeccccccccccc--ccchhHHHHHHH--HHHHHHHhhc--ccCCcccccCCcCCCChh
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP--FCSNLQRFYVAT--SRQLKRLESV--SRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~~l~~~--~~~~~~~~~~~~lsgs~G 353 (602)
|.+| ..++..| +... ............ ....+.+..+ +....+++.+.+|| ||
T Consensus 97 ~~lf-------------~~tv~en------i~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LS--GG 155 (251)
T d1jj7a_ 97 PQVF-------------GRSLQEN------IAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLS--GG 155 (251)
T ss_dssp CCCC-------------SSBHHHH------HHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSC--HH
T ss_pred cccc-------------Ccchhhh------hhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCC--hh
Confidence 4333 2222211 1110 001111111111 1111112222 23344667778888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeecccccccCCeEEEEeCceEEeecCh
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~ 431 (602)
|||||+|||||+++|+|||||||||+||+.++..+.+.|+++.+ ++|+|+||||++.+..||||++|++|+|++.|+|
T Consensus 156 qkQRvaiARal~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~ 235 (251)
T d1jj7a_ 156 QRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTH 235 (251)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECH
T ss_pred HceEEEEeeccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999988643 7999999999999888999999999999999999
Q ss_pred hHHhhcchhHHHHHH
Q psy3001 432 SVLMKNKASIFYSMA 446 (602)
Q Consensus 432 ~~l~~~~~~~~~~~~ 446 (602)
+++++. ++.|+.++
T Consensus 236 ~eLl~~-~~~y~~l~ 249 (251)
T d1jj7a_ 236 QQLMEK-KGCYWAMV 249 (251)
T ss_dssp HHHHHH-TSHHHHHH
T ss_pred HHHHhC-CcHHHHHh
Confidence 999987 45666554
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=5.7e-47 Score=368.40 Aligned_cols=217 Identities=27% Similarity=0.428 Sum_probs=168.3
Q ss_pred CcEEEeeeEEEEe---------------cCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhc
Q psy3001 197 GEVEFKDYKVRYR---------------EGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSR 261 (602)
Q Consensus 197 ~~i~~~~vs~~~~---------------~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~ 261 (602)
+.++|+||+|+|+ +| +++||+|+||||||||+++|+|+++|++|+|.++|.++..++...+|++
T Consensus 15 g~I~~~nvsf~Y~~~~~~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~ 93 (255)
T d2hyda1 15 GRIDIDHVSFQYNDNEAPILKDINLSIEKG-ETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 93 (255)
T ss_dssp CCEEEEEEEECSCSSSCCSEEEEEEEECTT-CEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHT
T ss_pred CEEEEEEEEEEeCCCCCcceeceEEEEcCC-CEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhhe
Confidence 4556666666664 44 8899999999999999999999999999999999999999999999999
Q ss_pred cceecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccccc-chhHHHHHHHHH--HHHHHhh--cc
Q psy3001 262 LTIIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFC-SNLQRFYVATSR--QLKRLES--VS 336 (602)
Q Consensus 262 i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~l~~--~~ 336 (602)
++||+|+ +++| .+++. +++..... ....+....... ..+.+.. .+
T Consensus 94 i~~v~Q~-----------~~lf-------------~~Ti~------eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~g 143 (255)
T d2hyda1 94 IGLVQQD-----------NILF-------------SDTVK------ENILLGRPTATDEEVVEAAKMANAHDFIMNLPQG 143 (255)
T ss_dssp EEEECSS-----------CCCC-------------SSBHH------HHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTG
T ss_pred eeeeecc-----------ccCC-------------CCCHH------HHHhccCcCCCHHHHHHHHHHhCCHHHHHhcccc
Confidence 9999997 4444 33322 22211110 111111111110 0111111 12
Q ss_pred cCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCe
Q psy3001 337 RSPIYSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDR 416 (602)
Q Consensus 337 ~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~ 416 (602)
....+++.+.+|| |||||||+|||||+++|+|||||||||+||+.++..+.+.++.+.+++|+|+||||++.+..|||
T Consensus 144 l~t~i~~~g~~LS--gGq~QRi~iARal~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ 221 (255)
T d2hyda1 144 YDTEVGERGVKLS--GGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADK 221 (255)
T ss_dssp GGCBCCGGGTTSC--HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSE
T ss_pred ccchhcCCCCCcC--HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCE
Confidence 2334566777888 69999999999999999999999999999999999999999998889999999999999988999
Q ss_pred EEEEeCceEEeecChhHHhhcchhHHHHHHH
Q psy3001 417 VLVLDKGLVVEFDSPSVLMKNKASIFYSMAK 447 (602)
Q Consensus 417 i~~l~~G~i~~~g~~~~l~~~~~~~~~~~~~ 447 (602)
|++|++|+|++.|+++++++. .+.|..++.
T Consensus 222 ii~l~~G~iv~~G~~~eLl~~-~~~y~~l~~ 251 (255)
T d2hyda1 222 IVVIENGHIVETGTHRELIAK-QGAYEHLYS 251 (255)
T ss_dssp EEEEETTEEEEEECHHHHHHT-TSHHHHHHT
T ss_pred EEEEECCEEEEECCHHHHHhC-CcHHHHHHH
Confidence 999999999999999999986 556766654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=9.4e-48 Score=372.29 Aligned_cols=216 Identities=26% Similarity=0.375 Sum_probs=169.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++||||++++| +++||+||||||||||+++|+|+++|++|+|.+||+++.+++...+|++|+||||+
T Consensus 16 ~vL~~isl~i~~G-e~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~---------- 84 (242)
T d1mv5a_ 16 QILRDISFEAQPN-SIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQD---------- 84 (242)
T ss_dssp CSEEEEEEEECTT-EEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCS----------
T ss_pred ceeeeeEEEEcCC-CEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccc----------
Confidence 3689999999998 99999999999999999999999999999999999999999999999999999998
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhh-----cccCCcccccCCcCCCChh
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLES-----VSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~~lsgs~G 353 (602)
|.+| .+++..|-.... ............ .+.....+. ......+++.|.+|| ||
T Consensus 85 -~~lf-------------~~ti~eNi~~~~----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~g~~LS--GG 143 (242)
T d1mv5a_ 85 -SAIM-------------AGTIRENLTYGL----EGDYTDEDLWQV-LDLAFARSFVENMPDQLNTEVGERGVKIS--GG 143 (242)
T ss_dssp -SCCC-------------CEEHHHHTTSCT----TSCSCHHHHHHH-HHHHTCTTTTTSSTTGGGCEESTTSBCCC--HH
T ss_pred -cccC-------------Ccchhhheeccc----ccccchhhHHHH-HHHHHhhhhhccCcccccccccCCCCCCC--HH
Confidence 4444 223222211100 000011111111 111110001 111223455667788 69
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEEEeCceEEeecChhH
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~~~ 433 (602)
|||||+|||||+++|+|||||||||+||+.++..+++.|+++.+++|+|+||||++.+..||||++|++|+|++.|++++
T Consensus 144 qkQRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~e 223 (242)
T d1mv5a_ 144 QRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNE 223 (242)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHH
T ss_pred HHHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999999999888999999999999998899999999999999999999
Q ss_pred HhhcchhHHHHHHH
Q psy3001 434 LMKNKASIFYSMAK 447 (602)
Q Consensus 434 l~~~~~~~~~~~~~ 447 (602)
+++. .+.|..++.
T Consensus 224 Ll~~-~~~y~~l~~ 236 (242)
T d1mv5a_ 224 LVAT-HPLYAKYVS 236 (242)
T ss_dssp HHHH-CHHHHHHHH
T ss_pred HHhC-ChHHHHHHH
Confidence 9986 556665554
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=6.6e-45 Score=348.09 Aligned_cols=211 Identities=20% Similarity=0.345 Sum_probs=165.6
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++||||++.+| |+++|+||||||||||+|+|+|+++|++|+|.++|+++..+++. +++||||||++.
T Consensus 18 ~~~al~~vsl~v~~G-e~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~------ 88 (239)
T d1v43a3 18 NFTAVNKLNLTIKDG-EFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYA------ 88 (239)
T ss_dssp TEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC---------
T ss_pred CEEEEcceeEEECCC-CEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechh------
Confidence 356799999999998 99999999999999999999999999999999999999988764 578999999842
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+|. +.++.+++.... ..... ......+..+.++.+++.+........||| |||
T Consensus 89 -----l~~------------------~ltv~enl~~~~~~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSG--Gq~ 142 (239)
T d1v43a3 89 -----VWP------------------HMTVYENIAFPLKIKKFP-KDEIDKRVRWAAELLQIEELLNRYPAQLSG--GQR 142 (239)
T ss_dssp --------------------------CCCHHHHHHTTCC--CCC-HHHHHHHHHHHHHHTTCGGGTTSCTTTCCS--SCH
T ss_pred -----hcc------------------cchHHHHHHHHHHHcCCC-HHHHHHHHHHHHHHcCChhhhcCChhhCCH--HHH
Confidence 110 001111110000 00000 011222333444466666677788888994 999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|+|||||++||+.+...+++.++++. + |+|+|+|||+++++.. ||||++|++|+|++.|+++
T Consensus 143 QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~ 222 (239)
T d1v43a3 143 QRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPT 222 (239)
T ss_dssp HHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHhhhccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999999999999999999999999999999999999874 3 7999999999999988 9999999999999999999
Q ss_pred HHhhcchhHH
Q psy3001 433 VLMKNKASIF 442 (602)
Q Consensus 433 ~l~~~~~~~~ 442 (602)
+++.++...|
T Consensus 223 el~~~P~~~~ 232 (239)
T d1v43a3 223 EVYLRPNSVF 232 (239)
T ss_dssp HHHHCCSBHH
T ss_pred HHHhCCCCHH
Confidence 9998765544
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.5e-45 Score=346.25 Aligned_cols=211 Identities=21% Similarity=0.275 Sum_probs=147.8
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++++| |+++|+||||||||||+++|+|+++|++|+|.++|+++.+.++. +++||||||++..
T Consensus 12 ~~~~l~~isl~i~~G-ei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l----- 83 (232)
T d2awna2 12 EVVVSKDINLDIHEG-EFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYAL----- 83 (232)
T ss_dssp TEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEECSSCCC-----
T ss_pred CEEEEeeeEEEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeecccccc-----
Confidence 356899999999998 99999999999999999999999999999999999999887754 5789999998522
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+. .. ++.+++.... ..... ......+..+.++.++..+........|| ||||
T Consensus 84 ------~~------------~~------tv~eni~~~~~~~~~~-~~~~~~~v~~~l~~~~l~~~~~~~~~~LS--GGqk 136 (232)
T d2awna2 84 ------YP------------HL------SVAENMSFGLKLAGAK-KEVINQRVNQVAEVLQLAHLLDRKPKALS--GGQR 136 (232)
T ss_dssp ----------------------------------------------CHHHHHHHHHHHHC--------------------
T ss_pred ------cc------------ch------hHHHHHHHHHHHcCCC-HHHHHHHHHHHHHhCCChhhhhCChhhCC--HHHH
Confidence 10 00 1111110000 00000 00111223344445666666777788888 5999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChh
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPS 432 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~ 432 (602)
||++|||||+.+|++|+|||||++||+.+...+++.++++. .|+|+|+|||+++++.. ||||++|++|+|++.|+++
T Consensus 137 QRvaiAraL~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~ 216 (232)
T d2awna2 137 QRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPL 216 (232)
T ss_dssp ---CHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998863 37999999999999998 9999999999999999999
Q ss_pred HHhhcchhHH
Q psy3001 433 VLMKNKASIF 442 (602)
Q Consensus 433 ~l~~~~~~~~ 442 (602)
+++.++...|
T Consensus 217 el~~~P~~~~ 226 (232)
T d2awna2 217 ELYHYPADRF 226 (232)
T ss_dssp HHHHSCSBHH
T ss_pred HHHhCCCCHH
Confidence 9998765544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=9.1e-45 Score=347.82 Aligned_cols=209 Identities=24% Similarity=0.378 Sum_probs=168.1
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH---Hhhccceecccchhhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT---LRSRLTIIPQVLATIFVI 275 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~---~~~~i~~v~Q~~~~~~~~ 275 (602)
..++||||++.+| |+++|+||||||||||+++|+|+.+|++|+|.++|+++..++... +|+++++|||++.. +
T Consensus 19 ~al~~vsl~i~~G-e~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l-~-- 94 (240)
T d3dhwc1 19 QALNNVSLHVPAG-QIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNL-L-- 94 (240)
T ss_dssp EEEEEEEEEECSS-CEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCC-C--
T ss_pred EEeeceeEEEcCC-CEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhcccccccccccc-C--
Confidence 4799999999998 999999999999999999999999999999999999999888765 55789999998421 1
Q ss_pred ccCCceeEeeecccceeeeccccceeeccccccccccc---ccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP---FCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
| . .++.+++..+ ......+ ...+..+.++.+++.+........|| |
T Consensus 95 ----~----------------~------~tv~eni~~~l~~~~~~~~~---~~~~v~~~L~~vgL~~~~~~~~~~LS--G 143 (240)
T d3dhwc1 95 ----S----------------S------RTVFGNVALPLELDNTPKDE---VKRRVTELLSLVGLGDKHDSYPSNLS--G 143 (240)
T ss_dssp ----T----------------T------SBHHHHHHHHHHTTTCCTTH---HHHHHHHHHHHHSTTTTTSSCBSCCC--H
T ss_pred ----C----------------C------ccHHHHHHHHHHHcCCCHHH---HHHHHHHHHHHcCCchhhhCChhhCC--H
Confidence 0 0 0111111000 0001111 12333444556666666777888888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
||||||+|||||+.+|++|||||||++||+.+...+++.|+++. + |.|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 144 G~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G 223 (240)
T d3dhwc1 144 GQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQD 223 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999864 3 7999999999999998 9999999999999999
Q ss_pred ChhHHhhcchhHH
Q psy3001 430 SPSVLMKNKASIF 442 (602)
Q Consensus 430 ~~~~l~~~~~~~~ 442 (602)
++++++.++...|
T Consensus 224 ~~~ei~~~P~~~~ 236 (240)
T d3dhwc1 224 TVSEVFSHPKTPL 236 (240)
T ss_dssp ETTTTTCSSCCTT
T ss_pred CHHHHHhCCCChH
Confidence 9999987755443
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=7.5e-45 Score=347.88 Aligned_cols=212 Identities=24% Similarity=0.341 Sum_probs=168.2
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCC---hHHHhhccceecccchhhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLG---LHTLRSRLTIIPQVLATIFV 274 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~---~~~~~~~i~~v~Q~~~~~~~ 274 (602)
...++||||++.+| |+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+|++||+|+|++.
T Consensus 18 ~~aL~~vsl~i~~G-e~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~---- 92 (242)
T d1oxxk2 18 VVALDNVNINIENG-ERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWA---- 92 (242)
T ss_dssp EEEEEEEEEEECTT-CEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSC----
T ss_pred EEEEeceEEEECCC-CEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccc----
Confidence 45799999999998 999999999999999999999999999999999999997755 3345788999999842
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChh
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVG 353 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~G 353 (602)
+| ...++.+++..+. ..... ......+..+.++.+++.+........|| ||
T Consensus 93 -------L~------------------p~ltv~eni~~~l~~~~~~-~~~~~~~v~~~l~~~gL~~~~~~~p~~LS--GG 144 (242)
T d1oxxk2 93 -------LY------------------PNLTAFENIAFPLTNMKMS-KEEIRKRVEEVAKILDIHHVLNHFPRELS--GA 144 (242)
T ss_dssp -------CC------------------TTSCHHHHHHGGGTTSSCC-HHHHHHHHHHHHHHTTCGGGTTSCGGGSC--HH
T ss_pred -------cc------------------ccccHHHHhhhhhHhhcCC-HHHHHHHHHHHHhhcChHhhhhCChhhCC--HH
Confidence 11 0001111111110 00111 11122334444556666677778888888 59
Q ss_pred hHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeecC
Q psy3001 354 QRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDS 430 (602)
Q Consensus 354 q~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~ 430 (602)
||||++|||||+.+|++|+|||||++||+.+...+++.++++. + +.|+|+|||+++++.. ||||++|++|+|++.|+
T Consensus 145 qkQRvaiARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~ 224 (242)
T d1oxxk2 145 QQQRVALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (242)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHhHHHHHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999999999998874 3 7999999999999988 99999999999999999
Q ss_pred hhHHhhcchhHH
Q psy3001 431 PSVLMKNKASIF 442 (602)
Q Consensus 431 ~~~l~~~~~~~~ 442 (602)
+++++.++...|
T Consensus 225 ~~el~~~P~~~~ 236 (242)
T d1oxxk2 225 PEDLYDNPVSIQ 236 (242)
T ss_dssp HHHHHHSCSSHH
T ss_pred HHHHHhCCCCHH
Confidence 999998765544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=1.1e-44 Score=344.42 Aligned_cols=206 Identities=23% Similarity=0.349 Sum_probs=165.9
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++||||++.+| |+++|+||||||||||+++|+|+++|++|+|.++|+++.+++.. ++.++||||++.
T Consensus 14 ~aL~~vs~~i~~G-e~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~-------- 82 (229)
T d3d31a2 14 FSLDNLSLKVESG-EYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYS-------- 82 (229)
T ss_dssp CEEEEEEEEECTT-CEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCC--------
T ss_pred EEEeeeEEEECCC-CEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcceeeccccc--------
Confidence 4799999999998 99999999999999999999999999999999999999987765 678999999842
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| .+.++.+++..... ... .....+..+.++.++..+........|| |||||||
T Consensus 83 ---l~------------------~~~tV~enl~~~~~--~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~LS--GG~~QRv 136 (229)
T d3d31a2 83 ---LF------------------PHMNVKKNLEFGMR--MKK-IKDPKRVLDTARDLKIEHLLDRNPLTLS--GGEQQRV 136 (229)
T ss_dssp ---CC------------------TTSCHHHHHHHHHH--HHC-CCCHHHHHHHHHHTTCTTTTTSCGGGSC--HHHHHHH
T ss_pred ---cC------------------ccccHHHHHHHHHh--hcc-ccHHHHHHHHHHHhcchhhHhCChhhCC--HHHhcch
Confidence 11 00111111110000 000 0011233444456666777777888888 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc--cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF--AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+++|++|||||||++||+.+...+++.++++. .+.|+|+|||+++++.. ||||++|++|++++.|++++++
T Consensus 137 aiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~ 216 (229)
T d3d31a2 137 ALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIF 216 (229)
T ss_dssp HHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHH
T ss_pred hhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999863 37899999999999998 9999999999999999999998
Q ss_pred hcchhH
Q psy3001 436 KNKASI 441 (602)
Q Consensus 436 ~~~~~~ 441 (602)
+++...
T Consensus 217 ~~P~~~ 222 (229)
T d3d31a2 217 EKPVEG 222 (229)
T ss_dssp SSCCTT
T ss_pred hCCCCH
Confidence 875543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=1.1e-44 Score=347.25 Aligned_cols=213 Identities=19% Similarity=0.306 Sum_probs=167.9
Q ss_pred cEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHH----Hhhccceecccchhhh
Q psy3001 198 EVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQVLATIF 273 (602)
Q Consensus 198 ~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~----~~~~i~~v~Q~~~~~~ 273 (602)
...++||||++++| |+++|+||||||||||+|+|+|+++|++|+|.++|.++...+... .++.|++|+|++.
T Consensus 16 ~~al~~vsl~i~~G-e~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~--- 91 (240)
T d1g2912 16 VTAVREMSLEVKDG-EFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYA--- 91 (240)
T ss_dssp EEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCC---
T ss_pred EEEEcceeeEEcCC-CEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchh---
Confidence 45899999999998 999999999999999999999999999999999999997765443 3678999999842
Q ss_pred hhccCCceeEeeecccceeeeccccceeecccccccccccc-cchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCCh
Q psy3001 274 VICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF-CSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNV 352 (602)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~ 352 (602)
++ ...++.+++..+. .... .......+..+.++.++..+........|| |
T Consensus 92 --------L~------------------~~ltV~eni~~~~~~~~~-~~~e~~~~v~~~l~~~~l~~~~~~~p~~LS--G 142 (240)
T d1g2912 92 --------LY------------------PHMTVYDNIAFPLKLRKV-PRQEIDQRVREVAELLGLTELLNRKPRELS--G 142 (240)
T ss_dssp --------CC------------------TTSCHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHTCGGGTTCCGGGSC--H
T ss_pred --------hc------------------chhhhhHhhhhhHHHcCC-CHHHHHHHHHHHHHHcCChhHhcCChhhCC--H
Confidence 11 0001111111000 0000 011122334444555666666677788888 5
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
|||||++|||||+.+|++|||||||++||+.+...+++.++++. + |.|+|+|||+++++.. ||||++|++|+|++.|
T Consensus 143 GqkQRv~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G 222 (240)
T d1g2912 143 GQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (240)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999998864 3 8999999999999988 9999999999999999
Q ss_pred ChhHHhhcchhHHH
Q psy3001 430 SPSVLMKNKASIFY 443 (602)
Q Consensus 430 ~~~~l~~~~~~~~~ 443 (602)
++++++.++...|.
T Consensus 223 ~~~el~~~P~~~~~ 236 (240)
T d1g2912 223 SPDEVYDKPANTFV 236 (240)
T ss_dssp CHHHHHHSCSBHHH
T ss_pred CHHHHHhCCCCHHH
Confidence 99999987665543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.6e-43 Score=337.45 Aligned_cols=201 Identities=23% Similarity=0.334 Sum_probs=156.0
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHH----hhccceecccchhhhh
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQVLATIFV 274 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~----~~~i~~v~Q~~~~~~~ 274 (602)
..++|+||++.+| |++||+||||||||||+++|+|+++|++|+|.++|.++..++..++ +++|+||+|++....
T Consensus 19 ~al~~isl~i~~G-e~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~- 96 (230)
T d1l2ta_ 19 YALKNVNLNIKEG-EFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP- 96 (230)
T ss_dssp EEEEEEEEEECTT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCT-
T ss_pred EEEeceEEEEcCC-CEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCc-
Confidence 3699999999998 9999999999999999999999999999999999999999988765 357999999843211
Q ss_pred hccCCceeEeeecccceeeeccccceeecccccccccccc---cchhHHHHHHHHHHHHHHhhcccCC-cccccCCcCCC
Q psy3001 275 ICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPF---CSNLQRFYVATSRQLKRLESVSRSP-IYSHFGETVTG 350 (602)
Q Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~lsg 350 (602)
.. ++.+++..+. ............+..+.++.+++.. .....+.+||
T Consensus 97 ----------------------~~------tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LS- 147 (230)
T d1l2ta_ 97 ----------------------LL------TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLS- 147 (230)
T ss_dssp ----------------------TS------CHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSC-
T ss_pred ----------------------Cc------cHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCC-
Confidence 00 1111100000 0000011122233444444555433 3456677888
Q ss_pred ChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-c-ccEEEEeeecccccccCCeEEEEeCceEEee
Q psy3001 351 NVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-A-HCTVLTIAHRLNTIIDSDRVLVLDKGLVVEF 428 (602)
Q Consensus 351 s~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~-~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~ 428 (602)
|||||||+|||||+.+|++|+|||||++||+.++..+++.++++. + ++|+|+|||+++.+..||||++|++|+|++.
T Consensus 148 -GGqkQRvaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~ 226 (230)
T d1l2ta_ 148 -GGQQQRVAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVERE 226 (230)
T ss_dssp -HHHHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEE
T ss_pred -HHHHHHHHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEe
Confidence 599999999999999999999999999999999999999999874 3 7999999999998755999999999999998
Q ss_pred cCh
Q psy3001 429 DSP 431 (602)
Q Consensus 429 g~~ 431 (602)
|++
T Consensus 227 g~~ 229 (230)
T d1l2ta_ 227 EKL 229 (230)
T ss_dssp EEC
T ss_pred ccC
Confidence 764
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.1e-42 Score=331.88 Aligned_cols=204 Identities=25% Similarity=0.347 Sum_probs=163.3
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..+ ||||+.. + |+++|+||||||||||+++|+|+++|++|+|.++|+++..+++. ++.||||||++.
T Consensus 14 ~~~-~vs~~~~-~-e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~-------- 80 (240)
T d2onka1 14 FRL-NVDFEMG-R-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYA-------- 80 (240)
T ss_dssp EEE-EEEEEEC-S-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCC--------
T ss_pred EEE-EEEEEeC-C-EEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchh--------
Confidence 345 7888884 4 89999999999999999999999999999999999999988764 688999999842
Q ss_pred CceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
+| .+-++.+++..+.. ... ......+..+.++.++...........|| |||||||
T Consensus 81 ---l~------------------~~ltV~enl~~~l~-~~~-~~~~~~~v~~~l~~~gl~~~~~~~~~~LS--GG~kQRv 135 (240)
T d2onka1 81 ---LF------------------PHLSVYRNIAYGLR-NVE-RVERDRRVREMAEKLGIAHLLDRKPARLS--GGERQRV 135 (240)
T ss_dssp ---CC------------------TTSCHHHHHHTTCT-TSC-HHHHHHHHHHHHHTTTCTTTTTCCGGGSC--HHHHHHH
T ss_pred ---hc------------------ccchhhHhhhhhhc-ccC-HHHHHHHHHHHHHhcCcHhhhhCChhhCC--HHHHHHH
Confidence 11 00112222111110 000 11122334455556777777888888999 5999999
Q ss_pred HHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhcc--ccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHHh
Q psy3001 359 CLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFA--HCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVLM 435 (602)
Q Consensus 359 ~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l~ 435 (602)
+|||||+++|++|+|||||++||+.+...+++.++++.+ +.|+|+|||+++++.. ||||++|++|++++.|++++++
T Consensus 136 aiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~ 215 (240)
T d2onka1 136 ALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELF 215 (240)
T ss_dssp HHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHh
Confidence 999999999999999999999999999999999988743 7999999999999998 9999999999999999999998
Q ss_pred hcchh
Q psy3001 436 KNKAS 440 (602)
Q Consensus 436 ~~~~~ 440 (602)
+.+..
T Consensus 216 ~~~~~ 220 (240)
T d2onka1 216 SAKNG 220 (240)
T ss_dssp HSCCS
T ss_pred cCCCH
Confidence 76543
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-42 Score=339.02 Aligned_cols=212 Identities=25% Similarity=0.361 Sum_probs=164.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCCh-------------HHHhhccc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-------------HTLRSRLT 263 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~-------------~~~~~~i~ 263 (602)
+...++||||++.+| |++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ..+|++|+
T Consensus 14 ~~~al~~vs~~i~~G-Ei~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig 92 (258)
T d1b0ua_ 14 GHEVLKGVSLQARAG-DVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLT 92 (258)
T ss_dssp TEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEE
T ss_pred CEEEEcceeeEEcCC-CEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceE
Confidence 345799999999998 9999999999999999999999999999999999999875432 35778999
Q ss_pred eecccchhhhhhccCCceeEeeecccceeeeccccceeeccccccccccc----ccchhHHHHHHHHHHHHHHhhcccCC
Q psy3001 264 IIPQVLATIFVICYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITP----FCSNLQRFYVATSRQLKRLESVSRSP 339 (602)
Q Consensus 264 ~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~ 339 (602)
+|+|++..+. +.++.+++... ...... ....+..+.++.++..+
T Consensus 93 ~vfQ~~~l~~-----------------------------~~tv~env~~~~~~~~~~~~~---~~~~~~~~~l~~~~l~~ 140 (258)
T d1b0ua_ 93 MVFQHFNLWS-----------------------------HMTVLENVMEAPIQVLGLSKH---DARERALKYLAKVGIDE 140 (258)
T ss_dssp EECSSCCCCT-----------------------------TSCHHHHHHHHHHHTTCCCHH---HHHHHHHHHHHHTTCCH
T ss_pred EEEechhhcc-----------------------------chhcchhhhhhHHHhcCCCHH---HHHHHHHHHHHHcCCch
Confidence 9999853210 00111110000 000111 11222333444555544
Q ss_pred c-ccccCCcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCe
Q psy3001 340 I-YSHFGETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDR 416 (602)
Q Consensus 340 ~-~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~ 416 (602)
. ....+..|| |||||||+|||||+.+|++|||||||++||+.+...+++.++++. +|+|+|+|||+++++.. |||
T Consensus 141 ~~~~~~p~~LS--GG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adr 218 (258)
T d1b0ua_ 141 RAQGKYPVHLS--GGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSH 218 (258)
T ss_dssp HHHTSCGGGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSE
T ss_pred hhhccCccccc--HHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCE
Confidence 2 344567788 699999999999999999999999999999999999999998865 47999999999999998 999
Q ss_pred EEEEeCceEEeecChhHHhhcchhHHH
Q psy3001 417 VLVLDKGLVVEFDSPSVLMKNKASIFY 443 (602)
Q Consensus 417 i~~l~~G~i~~~g~~~~l~~~~~~~~~ 443 (602)
|++|++|+|++.|++++++.++...|.
T Consensus 219 i~vm~~G~iv~~g~~~ev~~~P~~~~~ 245 (258)
T d1b0ua_ 219 VIFLHQGKIEEEGDPEQVFGNPQSPRL 245 (258)
T ss_dssp EEEEETTEEEEEECHHHHHHSCCSHHH
T ss_pred EEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999999999999999987655544
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1e-41 Score=329.35 Aligned_cols=209 Identities=18% Similarity=0.285 Sum_probs=158.5
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhh-ccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~~~~~~ 275 (602)
+...++||||++++| |++||+||||||||||+++|+|+++|++|+|.++|+++...+....++ .++++||++.
T Consensus 18 ~~~al~~vs~~i~~G-ei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~----- 91 (240)
T d1ji0a_ 18 AIHAIKGIDLKVPRG-QIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRR----- 91 (240)
T ss_dssp TEEEEEEEEEEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCC-----
T ss_pred CEEEEeeeeEEECCC-CEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccc-----
Confidence 356899999999998 999999999999999999999999999999999999999988776644 5889999732
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhH
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQR 355 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~ 355 (602)
+|. .-+...|-..... ... ..........+..+.+. ...........+|| ||||
T Consensus 92 ------l~~------------~ltv~en~~~~~~---~~~-~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~LS--GG~~ 145 (240)
T d1ji0a_ 92 ------IFP------------ELTVYENLMMGAY---NRK-DKEGIKRDLEWIFSLFP--RLKERLKQLGGTLS--GGEQ 145 (240)
T ss_dssp ------CCT------------TSBHHHHHHGGGT---TCC-CSSHHHHHHHHHHHHCH--HHHTTTTSBSSSSC--HHHH
T ss_pred ------cCC------------cccHHHHHHHHHH---hcC-CHHHHHHHHHHHHHHhh--ChHHHHhCchhhCC--HHHH
Confidence 110 0011111000000 000 00111111112222110 12233455566777 6999
Q ss_pred HHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhH
Q psy3001 356 QLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSV 433 (602)
Q Consensus 356 Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~ 433 (602)
||++|||||+.+|++|||||||++||+.+...+++.++++. +|+|||++||+++++.. ||||++|++|++++.|++++
T Consensus 146 Qrv~iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~e 225 (240)
T d1ji0a_ 146 QMLAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASE 225 (240)
T ss_dssp HHHHHHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHH
T ss_pred HHHHHHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 99999999999999999999999999999999999999874 47999999999999988 99999999999999999999
Q ss_pred Hhhc
Q psy3001 434 LMKN 437 (602)
Q Consensus 434 l~~~ 437 (602)
++++
T Consensus 226 l~~~ 229 (240)
T d1ji0a_ 226 LLDN 229 (240)
T ss_dssp HHTC
T ss_pred HhcC
Confidence 9865
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.1e-41 Score=332.47 Aligned_cols=211 Identities=19% Similarity=0.279 Sum_probs=162.0
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhh-ccceecccchhhhhh
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRS-RLTIIPQVLATIFVI 275 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~-~i~~v~Q~~~~~~~~ 275 (602)
+...++||||+..+| |++||+||||||||||+++|+|+++|++|+|.++|.++...++.+.++ .|+++||++.....
T Consensus 16 ~~~aL~~vs~~v~~G-ei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~- 93 (254)
T d1g6ha_ 16 EFKALDGVSISVNKG-DVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE- 93 (254)
T ss_dssp TEEEEEEECCEEETT-CEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG-
T ss_pred CeEEEcceEEEECCC-CEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCC-
Confidence 345799999999998 999999999999999999999999999999999999999999887655 59999998642210
Q ss_pred ccCCceeEeeecccceeeeccccceeecccccc----------cccccccchhHHHHHHHHHHHHHHhhcccCCcccccC
Q psy3001 276 CYSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKP----------LIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFG 345 (602)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 345 (602)
.+...|-.+.. .............. .+..+.++.+..........
T Consensus 94 ----------------------ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~l~~~~~~~~ 148 (254)
T d1g6ha_ 94 ----------------------MTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV---EKAFKILEFLKLSHLYDRKA 148 (254)
T ss_dssp ----------------------SBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH---HHHHHHHHHTTCGGGTTSBG
T ss_pred ----------------------CeeeeeeeehhhhccccchhhhhhhcccccHHHHH---HHHHHHHHhcCcchhccCch
Confidence 01111100000 00000000111111 22233333444444455566
Q ss_pred CcCCCChhhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCc
Q psy3001 346 ETVTGNVGQRQLICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKG 423 (602)
Q Consensus 346 ~~lsgs~Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G 423 (602)
..|| |||||||+|||||+.+|++|||||||++||+.+...+++.++++. +|+|||+|||+++++.. ||||++|++|
T Consensus 149 ~~LS--gG~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G 226 (254)
T d1g6ha_ 149 GELS--GGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 226 (254)
T ss_dssp GGSC--HHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETT
T ss_pred hhCC--cHHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCC
Confidence 7788 699999999999999999999999999999999999999998874 57999999999999988 9999999999
Q ss_pred eEEeecChhHHhh
Q psy3001 424 LVVEFDSPSVLMK 436 (602)
Q Consensus 424 ~i~~~g~~~~l~~ 436 (602)
++++.|+++|+.+
T Consensus 227 ~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 227 QIIAEGRGEEEIK 239 (254)
T ss_dssp EEEEEEESHHHHH
T ss_pred EEEEEecHHHHhh
Confidence 9999999988754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.4e-41 Score=324.91 Aligned_cols=208 Identities=20% Similarity=0.301 Sum_probs=159.7
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| |++||+||||||||||+++|+|+++|++|+|.++|.++.+ .+..+++.++|+||++..
T Consensus 14 ~~~vl~~vs~~v~~G-ei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~i~~vpq~~~~----- 86 (238)
T d1vpla_ 14 KKEILKGISFEIEEG-EIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLISYLPEEAGA----- 86 (238)
T ss_dssp TEEEEEEEEEEECTT-CEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEEEECTTCCC-----
T ss_pred CEEEEccceeEEcCC-CEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhhEeEeeecccc-----
Confidence 356899999999998 9999999999999999999999999999999999999887 456789999999997321
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHH
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQ 356 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Q 356 (602)
+. ..+...+-.....+ ......+......+ .++.....+........+| |||||
T Consensus 87 ------~~------------~ltv~e~l~~~~~~---~~~~~~~~~~~~~~---~l~~~~l~~~~~~~~~~lS--gG~~q 140 (238)
T d1vpla_ 87 ------YR------------NMQGIEYLRFVAGF---YASSSSEIEEMVER---ATEIAGLGEKIKDRVSTYS--KGMVR 140 (238)
T ss_dssp ------CT------------TSBHHHHHHHHHHH---HCCCHHHHHHHHHH---HHHHHCCGGGGGSBGGGCC--HHHHH
T ss_pred ------CC------------CccHHHHHHHHHHh---cCCCHHHHHHHHHH---HHHhCCCHHHHhhhhhhCC--HHHHH
Confidence 10 00000000000000 00001111111122 2223344444555666777 69999
Q ss_pred HHHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeecChhHH
Q psy3001 357 LICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFDSPSVL 434 (602)
Q Consensus 357 rl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g~~~~l 434 (602)
|++|||||+++|++|+|||||++||+.+...+++.+++.. +|+|||++||+++++.. ||||++|++|++++.|+++++
T Consensus 141 rv~iA~al~~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el 220 (238)
T d1vpla_ 141 KLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 220 (238)
T ss_dssp HHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHH
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998864 57999999999999998 999999999999999999998
Q ss_pred hhc
Q psy3001 435 MKN 437 (602)
Q Consensus 435 ~~~ 437 (602)
..+
T Consensus 221 ~~~ 223 (238)
T d1vpla_ 221 KER 223 (238)
T ss_dssp HHH
T ss_pred Hhc
Confidence 653
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.4e-40 Score=327.28 Aligned_cols=195 Identities=22% Similarity=0.367 Sum_probs=147.4
Q ss_pred CcEEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhc
Q psy3001 197 GEVEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVIC 276 (602)
Q Consensus 197 ~~i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 276 (602)
+...++|+||++.+| +++||+||||||||||+++|+|+++|++|+|.++| +++|+||+
T Consensus 48 g~pvL~~isl~i~~G-e~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~-------- 105 (281)
T d1r0wa_ 48 GNPVLKNINLNIEKG-EMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQF-------- 105 (281)
T ss_dssp TCEEEEEEEEEECTT-CEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSS--------
T ss_pred CCeEEeCeEEEEcCC-CEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEecc--------
Confidence 567899999999999 99999999999999999999999999999999998 48999997
Q ss_pred cCCceeEeeecccceeeeccccceeecccccccccccccchhHHHHHHHHH--HHHHHhhc--ccCCcccccCCcCCCCh
Q psy3001 277 YSTPVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSR--QLKRLESV--SRSPIYSHFGETVTGNV 352 (602)
Q Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~--~~~~~~~~~~~~lsgs~ 352 (602)
+++| .+++. +++................. ....+..+ ......++.+.+|| |
T Consensus 106 ---~~l~-------------~~tv~------eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LS--g 161 (281)
T d1r0wa_ 106 ---SWIM-------------PGTIK------ENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLS--G 161 (281)
T ss_dssp ---CCCC-------------SEEHH------HHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSC--H
T ss_pred ---cccc-------------Cceee------ccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCC--H
Confidence 4443 22221 11111111111111110000 01111111 12233455666777 6
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCChhHHHHHHHH-HHHhccccEEEEeeecccccccCCeEEEEeCceEEeecCh
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDLETDDLIQST-IRSEFAHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFDSP 431 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g~~ 431 (602)
||||||+|||||+++|+||||||||++||+.++..+++. +....+++|+|+||||++.+..||||++|++|++++.|++
T Consensus 162 GqkQRv~lARaL~~~p~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~ 241 (281)
T d1r0wa_ 162 GQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTF 241 (281)
T ss_dssp HHHHHHHHHHHHHSCCSEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHhCccchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999988765 4445567999999999999878999999999999999999
Q ss_pred hHHhhc
Q psy3001 432 SVLMKN 437 (602)
Q Consensus 432 ~~l~~~ 437 (602)
++++..
T Consensus 242 ~eL~~~ 247 (281)
T d1r0wa_ 242 SELQSL 247 (281)
T ss_dssp HHHHHH
T ss_pred HHHhcc
Confidence 999865
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.8e-38 Score=304.17 Aligned_cols=199 Identities=17% Similarity=0.253 Sum_probs=157.0
Q ss_pred EEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCC
Q psy3001 200 EFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYST 279 (602)
Q Consensus 200 ~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~ 279 (602)
.++||||.+.+| |++||+||||||||||+++|+|+. |++|+|.++|+++..++...++...++++|.....+
T Consensus 14 ~l~~isl~I~~G-ei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~------ 85 (231)
T d1l7vc_ 14 RLGPLSGEVRAG-EILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPF------ 85 (231)
T ss_dssp TSCSEEEEEETT-CEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCS------
T ss_pred eecCEEEEEcCC-CEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCc------
Confidence 478999999999 999999999999999999999976 689999999999999999999999999998632110
Q ss_pred ceeEeeecccceeeeccccceeecccccccccc-cccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHH
Q psy3001 280 PVFIFVIVPVSVLYFFIQVSLIFTEDVKPLIIT-PFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLI 358 (602)
Q Consensus 280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl 358 (602)
...+...+.. ....... ....+.++.+...+........+| ||||||+
T Consensus 86 -----------------------~~~v~~~~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~~~~LS--gG~~Qrv 134 (231)
T d1l7vc_ 86 -----------------------ATPVWHYLTLHQHDKTRT------ELLNDVAGALALDDKLGRSTNQLS--GGEWQRV 134 (231)
T ss_dssp -----------------------SCBHHHHHHHHCSCTTCH------HHHHHHHHHTTCTTTTTSBGGGCC--HHHHHHH
T ss_pred -----------------------cccHHHHhhhccchhhHH------HHHHHHHHhcCCHhHhCcChhhcC--HHHHHHH
Confidence 0000000000 0000001 111122224445555666667788 6999999
Q ss_pred HHHHHHhh-------CCCeEEEecccccCChhHHHHHHHHHHHhc-cccEEEEeeeccccccc-CCeEEEEeCceEEeec
Q psy3001 359 CLARALLR-------KTKILILDEATAAIDLETDDLIQSTIRSEF-AHCTVLTIAHRLNTIID-SDRVLVLDKGLVVEFD 429 (602)
Q Consensus 359 ~lAral~~-------~p~iliLDEpts~LD~~~~~~i~~~l~~~~-~~~tvi~itH~l~~i~~-~d~i~~l~~G~i~~~g 429 (602)
+|||||++ +|++|||||||++||+.+...+.+.++++. +|+|||++||+++.+.. ||||++|++|++++.|
T Consensus 135 ~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G 214 (231)
T d1l7vc_ 135 RLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 214 (231)
T ss_dssp HHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCS
T ss_pred HHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEC
Confidence 99999997 779999999999999999999999998864 57999999999999988 9999999999999999
Q ss_pred ChhHHhhc
Q psy3001 430 SPSVLMKN 437 (602)
Q Consensus 430 ~~~~l~~~ 437 (602)
++++++.+
T Consensus 215 ~~~ev~~~ 222 (231)
T d1l7vc_ 215 RREEVLTP 222 (231)
T ss_dssp BHHHHSCH
T ss_pred CHHHHhCC
Confidence 99999764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.1e-33 Score=266.09 Aligned_cols=179 Identities=20% Similarity=0.304 Sum_probs=123.7
Q ss_pred EEEeeeEEEEecCCceEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccC
Q psy3001 199 VEFKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYS 278 (602)
Q Consensus 199 i~~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~ 278 (602)
..++|+||++++| ++++|+||||||||||+++|+|+++|++|+|.++|+++.. ++..++++||++..
T Consensus 15 ~vl~~is~~i~~G-ei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~~~~~~------- 81 (200)
T d1sgwa_ 15 PVLERITMTIEKG-NVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIV------- 81 (200)
T ss_dssp EEEEEEEEEEETT-CCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEECSSCCC-------
T ss_pred eEEeceEEEEcCC-CEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEeecccC-------
Confidence 4799999999998 9999999999999999999999999999999999998754 57789999996321
Q ss_pred CceeEeeecccceeeeccccceeeccccccc-ccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHH
Q psy3001 279 TPVFIFVIVPVSVLYFFIQVSLIFTEDVKPL-IITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQL 357 (602)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qr 357 (602)
. ..+...+.+... ........ ..+..+.++...... ..+....+| ||||||
T Consensus 82 ----~--------------~~~t~~~~l~~~~~~~~~~~~-------~~~~~~~l~~~~~~~-~~~~~~~LS--gG~~qr 133 (200)
T d1sgwa_ 82 ----P--------------RKISVEDYLKAVASLYGVKVN-------KNEIMDALESVEVLD-LKKKLGELS--QGTIRR 133 (200)
T ss_dssp ----C--------------TTSBHHHHHHHHHHHTTCCCC-------HHHHHHHHHHTTCCC-TTSBGGGSC--HHHHHH
T ss_pred ----C--------------CCcCHHHHHHHHHHhcCCccC-------HHHHHHHHHHcCCcc-cccccCcCC--CcHHHH
Confidence 0 000000000000 00000000 011122222222211 122334566 699999
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccc--cEEEEeeecccccccCCeEEEEe
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAH--CTVLTIAHRLNTIIDSDRVLVLD 421 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~--~tvi~itH~l~~i~~~d~i~~l~ 421 (602)
++|||||+++|+++||||||++||+.++..+++.+.+..+. .++|..+|+ +..||++.+|+
T Consensus 134 v~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~---l~~~D~~~~l~ 196 (200)
T d1sgwa_ 134 VQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREE---LSYCDVNENLH 196 (200)
T ss_dssp HHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSC---CTTSSEEEEGG
T ss_pred HHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEech---hhhcchhhhee
Confidence 99999999999999999999999999999999988886543 333333343 34599988874
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=9.3e-29 Score=237.71 Aligned_cols=123 Identities=32% Similarity=0.452 Sum_probs=116.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..++++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++|
T Consensus 17 ~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN 96 (241)
T d2pmka1 17 VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDN 96 (241)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCTTSBHHHH
T ss_pred ceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceEEEEecccccCCcccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCC-CCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVG-ESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~-~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|.+.. ..++++++++++.+++.++++.+|.+++|.++++|.+|
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~L 140 (241)
T d2pmka1 97 ISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGL 140 (241)
T ss_dssp HCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCC
T ss_pred ccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCcc
Confidence 98654 46889999999999999999999999999999999986
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.95 E-value=4.9e-29 Score=241.44 Aligned_cols=123 Identities=32% Similarity=0.477 Sum_probs=116.4
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..++++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||+|++|++||++|
T Consensus 32 ~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~~Ti~eN 111 (255)
T d2hyda1 32 PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKEN 111 (255)
T ss_dssp CSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred cceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHHhhheeeeeeccccCCCCCHHHH
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC-CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPV-GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~-~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
|... +..++++++++++.+++++++.++|+||+|.++++|.+|
T Consensus 112 i~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~L 155 (255)
T d2hyda1 112 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKL 155 (255)
T ss_dssp HGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTS
T ss_pred HhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCc
Confidence 9654 456899999999999999999999999999999999886
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.94 E-value=6.3e-28 Score=232.50 Aligned_cols=122 Identities=33% Similarity=0.575 Sum_probs=115.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||||++|++||++|+
T Consensus 17 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 96 (242)
T d1mv5a_ 17 ILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENL 96 (242)
T ss_dssp SEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEECCSSCCCCEEHHHHT
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheEEEccccccCCcchhhhe
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ...++++++++++.+++.+++..+|+++++.++++|.+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~L 140 (242)
T d1mv5a_ 97 TYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKI 140 (242)
T ss_dssp TSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCC
T ss_pred ecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCC
Confidence 643 446889999999999999999999999999999999987
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=2.7e-27 Score=229.53 Aligned_cols=123 Identities=28% Similarity=0.451 Sum_probs=115.8
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..+.++||+|++||++|||||||||||||+++|+|+++|++|+|.+||+|++.++...+|++|+||||||++|++|+++|
T Consensus 29 ~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 108 (253)
T d3b60a1 29 PALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANN 108 (253)
T ss_dssp CSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHH
T ss_pred ceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhhhhheEEEEeeccccCCcchhhh
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+... ...++++++++++.+++.++++++|.||+|.++++|.+|
T Consensus 109 ~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~L 153 (253)
T d3b60a1 109 IAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLL 153 (253)
T ss_dssp HHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSS
T ss_pred hhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCc
Confidence 7543 356889999999999999999999999999999999886
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.93 E-value=5.3e-27 Score=227.25 Aligned_cols=122 Identities=24% Similarity=0.388 Sum_probs=115.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhccc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLNL 560 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~nl 560 (602)
.++++||+|++||++||+|+||||||||+++|+|+++|++|+|.+||+|++.++.+++|++|+||||+|++|++||++|+
T Consensus 29 vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni 108 (251)
T d1jj7a_ 29 VLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENI 108 (251)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHHEEEECSSCCCCSSBHHHHH
T ss_pred eEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHHHHHhhhccccccccCcchhhhh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 561 DPV--GESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 561 ~~~--~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
... ...+++++.++++.+++.++++.+|.++++.++++|.+|
T Consensus 109 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~L 152 (251)
T d1jj7a_ 109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQL 152 (251)
T ss_dssp HCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSS
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccC
Confidence 754 345788899999999999999999999999999999886
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.87 E-value=5.9e-23 Score=194.03 Aligned_cols=109 Identities=21% Similarity=0.315 Sum_probs=95.7
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+...++. |++||||||+|.+|.. ||++|
T Consensus 15 aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~~tV~en 92 (229)
T d3d31a2 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKN 92 (229)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCEEECTTCCCCTTSCHHHH
T ss_pred EEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--HhcceeeccccccCccccHHHH
Confidence 45689999999999999999999999999999999999999999999999887755 6789999999999975 99999
Q ss_pred cCC----CCCCcHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDP----VGESSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~----~~~~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+.. .....++++.++++.+++.++.++.|..|
T Consensus 93 l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~L 128 (229)
T d3d31a2 93 LEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTL 128 (229)
T ss_dssp HHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGS
T ss_pred HHHHHhhccccHHHHHHHHHHHhcchhhHhCChhhC
Confidence 852 23346778999999999999888776643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.86 E-value=9.3e-23 Score=200.46 Aligned_cols=110 Identities=21% Similarity=0.301 Sum_probs=103.9
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccchhcc
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTLRLN 559 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv~~n 559 (602)
..++++||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++||||+|++|++||++|
T Consensus 50 pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~en 116 (281)
T d1r0wa_ 50 PVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQFSWIMPGTIKEN 116 (281)
T ss_dssp EEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------CEEEECSSCCCCSEEHHHH
T ss_pred eEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------EEEEEeccccccCceeecc
Confidence 346689999999999999999999999999999999999999999998 5999999999999999999
Q ss_pred cCCCCCCcHHHHHHHHHHcCCCccccccccCCCccccCCCCCC
Q psy3001 560 LDPVGESSDEAIWKALELAHLNTFVSNLPARLQHEVSEGGENL 602 (602)
Q Consensus 560 l~~~~~~~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~G~~l 602 (602)
+.+....++.+++++++.+++..++..+|.++++.++++|.+|
T Consensus 117 i~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~L 159 (281)
T d1r0wa_ 117 IIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTL 159 (281)
T ss_dssp HTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTS
T ss_pred ccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCC
Confidence 9887778888999999999999999999999999999999876
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.86 E-value=1.9e-22 Score=191.73 Aligned_cols=108 Identities=19% Similarity=0.291 Sum_probs=87.0
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+++.++. +++||||||+|.+|.. ||++|
T Consensus 21 al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~ltv~en 98 (239)
T d1v43a3 21 AVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISMVFQSYAVWPHMTVYEN 98 (239)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEEEEC------CCCHHHH
T ss_pred EEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceEEEEeechhhcccchHHHH
Confidence 35579999999999999999999999999999999999999999999999988764 5689999999999965 99999
Q ss_pred cCCCC---CCc----HHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPVG---ESS----DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~~---~~~----~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+.... ..+ ++.+.++|+.++|.++.++.|..
T Consensus 99 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 136 (239)
T d1v43a3 99 IAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQ 136 (239)
T ss_dssp HHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTT
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhcCChhh
Confidence 85332 223 35588899999999887766654
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.4e-22 Score=193.01 Aligned_cols=110 Identities=25% Similarity=0.365 Sum_probs=93.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChh---hhhccceEecCCcccccc-ch
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLH---TLRSRLTIIPQDPVLFSG-TL 556 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~---~lr~~i~~V~Qdp~lf~~-Tv 556 (602)
.++++||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+|+...+.+ .+|++||||||||.+|+. ||
T Consensus 20 al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~tv 99 (240)
T d3dhwc1 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTV 99 (240)
T ss_dssp EEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTSBH
T ss_pred EeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhhccccccccccccCCCccH
Confidence 35689999999999999999999999999999999999999999999999988765 456789999999999876 99
Q ss_pred hcccCC------CCC-CcHHHHHHHHHHcCCCccccccccC
Q psy3001 557 RLNLDP------VGE-SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 557 ~~nl~~------~~~-~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
++|+.. .++ ..++++.++|+.+||.++.++.|+.
T Consensus 100 ~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~ 140 (240)
T d3dhwc1 100 FGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSN 140 (240)
T ss_dssp HHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSC
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhh
Confidence 999841 122 2346799999999999877666553
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=1.6e-22 Score=191.65 Aligned_cols=108 Identities=16% Similarity=0.192 Sum_probs=74.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|++++..++. |++||||||+|.+|.. ||++|
T Consensus 15 ~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig~v~Q~~~l~~~~tv~en 92 (232)
T d2awna2 15 VSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGMVFQSYALYPHLSVAEN 92 (232)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEEEECSSCCC---------
T ss_pred EEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceeeeeccccccccchhHHHH
Confidence 45679999999999999999999999999999999999999999999999877754 5789999999999966 99999
Q ss_pred cCCCCC-------CcHHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPVGE-------SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~~~-------~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+..... ..++++.++++.++|.++.++.|..
T Consensus 93 i~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~ 130 (232)
T d2awna2 93 MSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKA 130 (232)
T ss_dssp ------------CHHHHHHHHHHHHC------------
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhh
Confidence 863211 2346699999999999877766553
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.86 E-value=7.9e-23 Score=194.52 Aligned_cols=112 Identities=16% Similarity=0.268 Sum_probs=94.2
Q ss_pred ccccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh---hhhhccceEecCCcccccc-c
Q psy3001 480 LNAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL---HTLRSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 480 ~~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~---~~lr~~i~~V~Qdp~lf~~-T 555 (602)
..++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++||||||+|.+|+. |
T Consensus 19 ~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~lt 98 (242)
T d1oxxk2 19 VALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLT 98 (242)
T ss_dssp EEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTSC
T ss_pred EEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhhccceEEecccccccccc
Confidence 34668999999999999999999999999999999999999999999999987553 3457789999999999976 9
Q ss_pred hhcccCCC---CCC----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 556 LRLNLDPV---GES----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 556 v~~nl~~~---~~~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
|++|+... ... .++++.++++.++|.++.++.|+.|
T Consensus 99 v~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~L 141 (242)
T d1oxxk2 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPREL 141 (242)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGS
T ss_pred HHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhC
Confidence 99998521 112 2356999999999998877666543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.85 E-value=3.3e-22 Score=189.40 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=91.9
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh----hccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL----RSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l----r~~i~~V~Qdp~lf~~-T 555 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+.+++ |++||||||+|.+|+. |
T Consensus 20 al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~t 99 (230)
T d1l2ta_ 20 ALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLT 99 (230)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTSC
T ss_pred EEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCcc
Confidence 3568999999999999999999999999999999999999999999999999987654 4569999999998865 9
Q ss_pred hhcccCC------CCCCc----HHHHHHHHHHcCCCccccccccCCCccccCC
Q psy3001 556 LRLNLDP------VGESS----DEAIWKALELAHLNTFVSNLPARLQHEVSEG 598 (602)
Q Consensus 556 v~~nl~~------~~~~~----~~~i~~al~~~~l~~~~~~~~~~l~~~v~~~ 598 (602)
|++|+.. ....+ .+++.+.|+.++|.+ ++.+.+++++++|
T Consensus 100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~---~~~~~~p~~LSGG 149 (230)
T d1l2ta_ 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEE---RFANHKPNQLSGG 149 (230)
T ss_dssp HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCG---GGTTCCGGGSCHH
T ss_pred HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhh---hhhcCChhhCCHH
Confidence 9999741 12222 234777788888865 3344555666543
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.85 E-value=2.6e-22 Score=191.14 Aligned_cols=110 Identities=18% Similarity=0.212 Sum_probs=92.2
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhh----hhccceEecCCcccccc-c
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHT----LRSRLTIIPQDPVLFSG-T 555 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~----lr~~i~~V~Qdp~lf~~-T 555 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++...+... .|++||||||+|.+|+. |
T Consensus 18 al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~~~L~~~lt 97 (240)
T d1g2912 18 AVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMT 97 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGGSSEEEECSCCCCCTTSC
T ss_pred EEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccccccceecccchhhcchhh
Confidence 456799999999999999999999999999999999999999999999997765433 36789999999999976 9
Q ss_pred hhcccCC----CCC---CcHHHHHHHHHHcCCCccccccccC
Q psy3001 556 LRLNLDP----VGE---SSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 556 v~~nl~~----~~~---~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
|++|+.. ... ..++++.++++.++|.++.++.|..
T Consensus 98 V~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~ 139 (240)
T d1g2912 98 VYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRE 139 (240)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGG
T ss_pred hhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhh
Confidence 9999842 111 2345699999999999877665543
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.84 E-value=1.6e-21 Score=184.97 Aligned_cols=105 Identities=27% Similarity=0.386 Sum_probs=88.9
Q ss_pred ceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcccCC
Q psy3001 484 LVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLNLDP 562 (602)
Q Consensus 484 ~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~nl~~ 562 (602)
+++|++. +|++||+||||||||||+++|+|+++|++|+|.++|+|+...++. |++||||||+|.+|+. ||++|+..
T Consensus 17 ~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q~~~l~~~ltV~enl~~ 93 (240)
T d2onka1 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAY 93 (240)
T ss_dssp EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCSSCCCCTTSCHHHHHHT
T ss_pred EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeeccchhhcccchhhHhhhh
Confidence 4677774 589999999999999999999999999999999999999887765 6789999999999975 99999864
Q ss_pred CCC-C----cHHHHHHHHHHcCCCccccccccCC
Q psy3001 563 VGE-S----SDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 563 ~~~-~----~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
.-. . .++++.++++.++|+++.++.|..|
T Consensus 94 ~l~~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~L 127 (240)
T d2onka1 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARL 127 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGS
T ss_pred hhcccCHHHHHHHHHHHHHhcCcHhhhhCChhhC
Confidence 322 2 2356999999999998887776543
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.81 E-value=8.1e-21 Score=184.05 Aligned_cols=109 Identities=22% Similarity=0.213 Sum_probs=90.3
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhh-ccceEecCCcccccc-chhcc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLR-SRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr-~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+...++++++ .+|+|+||+|.+|.. ||++|
T Consensus 20 L~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~~~ltv~en 99 (254)
T d1g6ha_ 20 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLEN 99 (254)
T ss_dssp EEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEEECCCCCGGGGGSBHHHH
T ss_pred EcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhcCCccCCccccCCCCeeeee
Confidence 4579999999999999999999999999999999999999999999999999987764 469999999998865 99999
Q ss_pred cCCC-----------------CCCc---HHHHHHHHHHcCCCccccccccC
Q psy3001 560 LDPV-----------------GESS---DEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 560 l~~~-----------------~~~~---~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
+... .... .+++.++++.+++.+..++.+..
T Consensus 100 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 150 (254)
T d1g6ha_ 100 LLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGE 150 (254)
T ss_dssp HHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGG
T ss_pred eeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhh
Confidence 8421 0111 24577788889988766655443
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=5.2e-21 Score=185.13 Aligned_cols=114 Identities=25% Similarity=0.305 Sum_probs=90.8
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCCh-------------hhhhccceEecC
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGL-------------HTLRSRLTIIPQ 547 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~-------------~~lr~~i~~V~Q 547 (602)
.++++||++++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+. ...|++||||||
T Consensus 17 al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r~~ig~vfQ 96 (258)
T d1b0ua_ 17 VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQ 96 (258)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESCHHHHHHHHHHEEEECS
T ss_pred EEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccccHhHHHHHhcceEEEEe
Confidence 3568999999999999999999999999999999999999999999999975432 246788999999
Q ss_pred Ccccccc-chhcccCC----CCCC----cHHHHHHHHHHcCCCccccccccCCCccccC
Q psy3001 548 DPVLFSG-TLRLNLDP----VGES----SDEAIWKALELAHLNTFVSNLPARLQHEVSE 597 (602)
Q Consensus 548 dp~lf~~-Tv~~nl~~----~~~~----~~~~i~~al~~~~l~~~~~~~~~~l~~~v~~ 597 (602)
+|.+|.. ||++|+.. .... .++.+.++++.+++.+.. .+.+++++++
T Consensus 97 ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~p~~LSG 152 (258)
T d1b0ua_ 97 HFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA---QGKYPVHLSG 152 (258)
T ss_dssp SCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH---HTSCGGGSCH
T ss_pred chhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhh---hccCcccccH
Confidence 9999865 99999741 1112 245689999999997632 2334555544
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.80 E-value=2.2e-20 Score=179.11 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=88.6
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhh-hccceEecCCcccccc-chhc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTL-RSRLTIIPQDPVLFSG-TLRL 558 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~l-r~~i~~V~Qdp~lf~~-Tv~~ 558 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+...+.+.. |.+++|+||++.+|+. ||++
T Consensus 21 al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l~~~ltv~e 100 (240)
T d1ji0a_ 21 AIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYE 100 (240)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEEEECSSCCCCTTSBHHH
T ss_pred EEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhcccccCcccccCCcccHHH
Confidence 4568999999999999999999999999999999999999999999999999887665 4469999999999976 9999
Q ss_pred ccCCC-----CCC-cHHHHHHHHHHc-CCCccccccccC
Q psy3001 559 NLDPV-----GES-SDEAIWKALELA-HLNTFVSNLPAR 590 (602)
Q Consensus 559 nl~~~-----~~~-~~~~i~~al~~~-~l~~~~~~~~~~ 590 (602)
|+... ... ..+++.++++.+ ++.++.++.|..
T Consensus 101 n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 139 (240)
T d1ji0a_ 101 NLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGT 139 (240)
T ss_dssp HHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSS
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhh
Confidence 97421 111 234466677666 566655555443
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.79 E-value=4.7e-20 Score=176.38 Aligned_cols=110 Identities=18% Similarity=0.291 Sum_probs=92.1
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.+.++||++++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+. +..+|+.++||||++.+|.. |+++|
T Consensus 17 vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~i~~vpq~~~~~~~ltv~e~ 95 (238)
T d1vpla_ 17 ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKLISYLPEEAGAYRNMQGIEY 95 (238)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTTEEEECTTCCCCTTSBHHHH
T ss_pred EEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhhEeEeeeccccCCCccHHHH
Confidence 45579999999999999999999999999999999999999999999998764 56788899999999988865 99999
Q ss_pred cCCC----CC---CcHHHHHHHHHHcCCCccccccccCC
Q psy3001 560 LDPV----GE---SSDEAIWKALELAHLNTFVSNLPARL 591 (602)
Q Consensus 560 l~~~----~~---~~~~~i~~al~~~~l~~~~~~~~~~l 591 (602)
+... .. ..++.+.++++.+++.++.++.+..|
T Consensus 96 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l 134 (238)
T d1vpla_ 96 LRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTY 134 (238)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGC
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhC
Confidence 8421 11 12345888999999988877666544
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.73 E-value=2.2e-18 Score=160.83 Aligned_cols=98 Identities=19% Similarity=0.326 Sum_probs=84.4
Q ss_pred cccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcccccc-chhcc
Q psy3001 481 NAGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSG-TLRLN 559 (602)
Q Consensus 481 ~~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~-Tv~~n 559 (602)
.++++||++++||++||+||||||||||+++|+|+++|++|+|.++|+++.+ .+.+++|+||++.++.. |+++|
T Consensus 16 vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i~~~~~~~~~~~~~t~~~~ 90 (200)
T d1sgwa_ 16 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDY 90 (200)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGEEEECSSCCCCTTSBHHHH
T ss_pred EEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcEEEEeecccCCCCcCHHHH
Confidence 3568999999999999999999999999999999999999999999998864 57789999999987654 88888
Q ss_pred cC-----CCCCCcHHHHHHHHHHcCCCcc
Q psy3001 560 LD-----PVGESSDEAIWKALELAHLNTF 583 (602)
Q Consensus 560 l~-----~~~~~~~~~i~~al~~~~l~~~ 583 (602)
+. ...+.+++++.++++.+++.++
T Consensus 91 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 119 (200)
T d1sgwa_ 91 LKAVASLYGVKVNKNEIMDALESVEVLDL 119 (200)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHHHTTCCCT
T ss_pred HHHHHHhcCCccCHHHHHHHHHHcCCccc
Confidence 63 3345678889999999987654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=3.6e-17 Score=155.93 Aligned_cols=108 Identities=18% Similarity=0.215 Sum_probs=92.5
Q ss_pred ccceeeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc-ccccchhccc
Q psy3001 482 AGLVGLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV-LFSGTLRLNL 560 (602)
Q Consensus 482 ~~~~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~-lf~~Tv~~nl 560 (602)
++++||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...+..+++...+|++|+.. .|..++++++
T Consensus 15 l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 93 (231)
T d1l7vc_ 15 LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYL 93 (231)
T ss_dssp SCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSCBHHHHH
T ss_pred ecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhceeeeccccCCccccHHHHh
Confidence 45799999999999999999999999999999986 689999999999999999999989999999985 4667888876
Q ss_pred C--CCCCCcHHHHHHHHHHcCCCccccccccC
Q psy3001 561 D--PVGESSDEAIWKALELAHLNTFVSNLPAR 590 (602)
Q Consensus 561 ~--~~~~~~~~~i~~al~~~~l~~~~~~~~~~ 590 (602)
. .......+.+.++++.+++.++.++.+..
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 125 (231)
T d1l7vc_ 94 TLHQHDKTRTELLNDVAGALALDDKLGRSTNQ 125 (231)
T ss_dssp HHHCSCTTCHHHHHHHHHHTTCTTTTTSBGGG
T ss_pred hhccchhhHHHHHHHHHHhcCCHhHhCcChhh
Confidence 4 33344567799999999999887766553
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.58 E-value=2.9e-16 Score=143.95 Aligned_cols=158 Identities=13% Similarity=0.067 Sum_probs=94.7
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECCeecCCCChHHHhhccceecccchhhhhhccCCceeEeeecccceee
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQVLATIFVICYSTPVFIFVIVPVSVLY 293 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~ 293 (602)
.++|+||||||||||++.|+|.++|..|.+.+++.+....+. ..++..+.. ........
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~-----~~~~~~~~~------~~~~~~~~---------- 60 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKK-----RTGFRIITT------EGKKKIFS---------- 60 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC-----------CCEEEEEET------TCCEEEEE----------
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHH-----hhhhhhhhh------hHHHHHHh----------
Confidence 379999999999999999999999999999998765433211 111111000 00000000
Q ss_pred eccccceeecccccccccccccchhHHHHHHHHHHHHHHhhcccCCcccccCCcCCCChhhHHHHHHHHHHhhCCCeEEE
Q psy3001 294 FFIQVSLIFTEDVKPLIITPFCSNLQRFYVATSRQLKRLESVSRSPIYSHFGETVTGNVGQRQLICLARALLRKTKILIL 373 (602)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lsgs~Gq~Qrl~lAral~~~p~iliL 373 (602)
........... ..... ....+ + ++|++++.++++++.++|+++++
T Consensus 61 ---~~~~~~~~~~~-----~~~~~--------~~~~~-----------------~--~~~~~~~~~l~~~~~~~~~vlll 105 (178)
T d1ye8a1 61 ---SKFFTSKKLVG-----SYGVN--------VQYFE-----------------E--LAIPILERAYREAKKDRRKVIII 105 (178)
T ss_dssp ---ETTCCCSSEET-----TEEEC--------HHHHH-----------------H--HHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ---hhhhhhhhhhh-----hhhcC--------cchhh-----------------h--hhhhhHHHHHHHHHhcCCCceee
Confidence 00000000000 00000 00001 1 15999999999999999999999
Q ss_pred ecccccCChhHHHHHHHHHHH-hc-cccEEEEeeecccccccCCeEEEEeCceEEeec
Q psy3001 374 DEATAAIDLETDDLIQSTIRS-EF-AHCTVLTIAHRLNTIIDSDRVLVLDKGLVVEFD 429 (602)
Q Consensus 374 DEpts~LD~~~~~~i~~~l~~-~~-~~~tvi~itH~l~~i~~~d~i~~l~~G~i~~~g 429 (602)
|||....+. .. .....+.+ +. .+.++|+++|+.+....+|++..+.+|++++.+
T Consensus 106 DE~~~~~~~-~~-~~~~~l~~~l~~~~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~ 161 (178)
T d1ye8a1 106 DEIGKMELF-SK-KFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELT 161 (178)
T ss_dssp CCCSTTGGG-CH-HHHHHHHHHHTCTTSEEEEECCSSCCSHHHHHHHTCTTCEEEECC
T ss_pred cCCCccchh-hH-HHHHHHHHHhccCCCEEEEEEccHHHHHhhceEEEEeCCEEEEEC
Confidence 998544322 22 22333333 22 368999999998766669999999999998764
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.99 E-value=1.3e-08 Score=100.05 Aligned_cols=65 Identities=20% Similarity=0.212 Sum_probs=56.0
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWINCLFSVLY 68 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~~~~~~~~ 68 (602)
..+.++..++|.++++|++++|++||+++++|++++|+++|++.+...+...+..++..++.++.
T Consensus 82 ~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~ 146 (319)
T d3b60a2 82 WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIG 146 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccchhhHHHHhhcccchhhccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 45678999999999999999999999999999999999999999999887766666665554443
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.84 E-value=1.5e-08 Score=99.91 Aligned_cols=58 Identities=21% Similarity=0.189 Sum_probs=48.8
Q ss_pred chhhHHHHHHHHHHHHHHHcCcccccccccccchhhhhhhhHHHHhhhHHHHHHHHHH
Q psy3001 4 NGSIRASKGLHLVVLRNILHSCMSFFDTTPVGRMISRFSQDVETVDSNLPTFLRSWIN 61 (602)
Q Consensus 4 ~~~~~~~~~l~~~~~~~l~~~~~~~f~~~~~G~i~sr~~~d~~~i~~~~~~~~~~~~~ 61 (602)
..+.++..++|.++++|++++|++||+++++|++++|+++|++.+.+.+...+..++.
T Consensus 87 ~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~ 144 (323)
T d2hyda2 87 WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWL 144 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHH
T ss_pred HHHHhhhHHHHHHHhhhhhcccccccccccccccccccchhhhhhccchhhhhhhcch
Confidence 3466888999999999999999999999999999999999999988876543333333
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=98.55 E-value=5.9e-09 Score=94.07 Aligned_cols=39 Identities=18% Similarity=0.231 Sum_probs=33.9
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRT 532 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~ 532 (602)
+|+|+||||||||||+++|+|+++++.|.+.+++.+...
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~ 40 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPE 40 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHH
Confidence 589999999999999999999999999999998765443
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.35 E-value=2.4e-07 Score=95.17 Aligned_cols=70 Identities=21% Similarity=0.320 Sum_probs=59.2
Q ss_pred ChhhHHHHHHHHHH----hhCCCeEEEecccccCChhHHHHHHHHHHHhcc-ccEEEEeeecccccccCCeEEEE
Q psy3001 351 NVGQRQLICLARAL----LRKTKILILDEATAAIDLETDDLIQSTIRSEFA-HCTVLTIAHRLNTIIDSDRVLVL 420 (602)
Q Consensus 351 s~Gq~Qrl~lAral----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~-~~tvi~itH~l~~i~~~d~i~~l 420 (602)
|||||.++++|-.+ ..++++++||||+++||+.....+.+.|++... +.-+|+|||++..+..||+++.+
T Consensus 334 SgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 334 SGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp CHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 58999998876543 457889999999999999999999999987643 45699999999999999997755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.88 E-value=1.4e-05 Score=77.83 Aligned_cols=73 Identities=18% Similarity=0.319 Sum_probs=61.9
Q ss_pred ChhhHHHHHHHHHH----hhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccccCCeEEE--EeCc
Q psy3001 351 NVGQRQLICLARAL----LRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIIDSDRVLV--LDKG 423 (602)
Q Consensus 351 s~Gq~Qrl~lAral----~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~~d~i~~--l~~G 423 (602)
+.|||+...++..+ ..++.++++|||-++|+|.....+.+.|+...++.-+|++||++..+..+|+++. +++|
T Consensus 221 ~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~~g 299 (308)
T d1e69a_ 221 SGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNG 299 (308)
T ss_dssp CHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSS
T ss_pred hHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEeCC
Confidence 36999988776653 4467899999999999999999999999988777889999999999988999866 4455
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.43 E-value=0.00038 Score=64.53 Aligned_cols=47 Identities=9% Similarity=0.036 Sum_probs=32.5
Q ss_pred hhCCCeEEEecccccCChhHHHHHHH-HHHHhc-c-ccEEEEeeeccccc
Q psy3001 365 LRKTKILILDEATAAIDLETDDLIQS-TIRSEF-A-HCTVLTIAHRLNTI 411 (602)
Q Consensus 365 ~~~p~iliLDEpts~LD~~~~~~i~~-~l~~~~-~-~~tvi~itH~l~~i 411 (602)
..+..++++||+.++=++.....+.. .++.+. + +..++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 44556999999999999877666644 344442 2 35788888876544
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.34 E-value=0.0004 Score=63.85 Aligned_cols=47 Identities=13% Similarity=0.140 Sum_probs=33.2
Q ss_pred hCCCeEEEecccccCChhHHHHHHHH-HHHhc-cccEEEEeeecccccc
Q psy3001 366 RKTKILILDEATAAIDLETDDLIQST-IRSEF-AHCTVLTIAHRLNTII 412 (602)
Q Consensus 366 ~~p~iliLDEpts~LD~~~~~~i~~~-l~~~~-~~~tvi~itH~l~~i~ 412 (602)
.+..++++||...+=++.....+... ++.+. .+..++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 45568999999999998766555443 33333 3678999999866543
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.18 E-value=3.9e-05 Score=68.12 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=28.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
.|.|+|++|+|||||++.+++.+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 4789999999999999999999977666665443
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.01 E-value=0.00012 Score=63.94 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=22.2
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
+++|+|++|||||||++.|...++.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5899999999999999999987654
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.95 E-value=0.00029 Score=68.67 Aligned_cols=35 Identities=26% Similarity=0.421 Sum_probs=28.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
.+..+.|+|++||||||++++|++..+++.=-|.+
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred hCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 34457999999999999999999999876544555
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.90 E-value=0.00015 Score=63.36 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=23.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
.+++|+|++|||||||++.|...+....
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~~~g 30 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALCARG 30 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 4789999999999999999987665443
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.83 E-value=0.00028 Score=64.58 Aligned_cols=34 Identities=24% Similarity=0.184 Sum_probs=26.1
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEE
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTII 524 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~ 524 (602)
+|.+.+++|++|+|||||+++|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 3667899999999999999999998777788875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.82 E-value=0.00029 Score=61.77 Aligned_cols=35 Identities=20% Similarity=0.247 Sum_probs=27.5
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
.|.+|.|+|++||||||+.+.|+..+... -+.+++
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~~--~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGVP--KVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSSC--EEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCC--EEEecH
Confidence 47889999999999999999999876321 244555
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.80 E-value=0.00024 Score=62.03 Aligned_cols=34 Identities=24% Similarity=0.280 Sum_probs=26.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCC---ceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPAD---GTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~---G~I~i~g 527 (602)
+++|+|++|||||||++.|...++... |.|+-++
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~g~~v~vik~d~ 39 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 39 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCCCeEEEEEecc
Confidence 579999999999999999988776532 3444444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.77 E-value=0.00031 Score=61.73 Aligned_cols=28 Identities=18% Similarity=0.309 Sum_probs=24.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+|-+|.|+|++||||||+.++|+.-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688899999999999999999997653
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.77 E-value=0.0003 Score=62.51 Aligned_cols=26 Identities=27% Similarity=0.295 Sum_probs=23.5
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
|..+.|+||+|||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 67899999999999999999987764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.63 E-value=0.00049 Score=60.23 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.7
Q ss_pred CceEEEEeccCCChhHHHHHHhccc
Q psy3001 212 LELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 212 ~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++++.|+|++||||||+.+.|+..+
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3889999999999999999998765
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.60 E-value=0.00042 Score=61.52 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=23.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
.++.|+||||||||||++.|...++.
T Consensus 3 ~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 3 RVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 78999999999999999999877653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.59 E-value=0.00026 Score=62.47 Aligned_cols=34 Identities=18% Similarity=0.179 Sum_probs=28.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEEEC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 246 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~ 246 (602)
..+.|+|++|+|||||++.++..+....+.+.+.
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~ 35 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGF 35 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3589999999999999999999987766655443
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.54 E-value=7.1e-05 Score=67.56 Aligned_cols=34 Identities=26% Similarity=0.357 Sum_probs=26.3
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhccc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
|++.++.+.+ .+++|+|+|||||||++.+|.-.+
T Consensus 15 ~~~~~i~f~~--~~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 15 FFARTFDLDE--LVTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp EEEEEECHHH--HHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred EeeEEEEcCC--CeEEEECCCCCCHHHHHHHHHHHh
Confidence 4555555543 478999999999999999997554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.54 E-value=0.00088 Score=59.35 Aligned_cols=39 Identities=38% Similarity=0.620 Sum_probs=28.4
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc------------CCCCceEEECCeecC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII------------EPADGTIIIDGVDIR 531 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~------------~~~~G~I~i~g~~i~ 531 (602)
=+|||+|++|+|||||+++|+|-- .+..|.+.++|.++.
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~ 59 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYV 59 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceee
Confidence 369999999999999999999753 122345666665543
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.53 E-value=0.00065 Score=62.01 Aligned_cols=32 Identities=25% Similarity=0.288 Sum_probs=24.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
+..+++|+||+|||||++.|.+-.....|+|.
T Consensus 96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred CeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 67899999999999999999987776667664
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.52 E-value=0.0005 Score=61.41 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=21.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|||.|++|||||||++.|.-.+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 599999999999999999987654
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.52 E-value=0.0054 Score=57.82 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=24.8
Q ss_pred EeeeEEEEecCCceEEEEeccCCChhHHHHHHhc
Q psy3001 201 FKDYKVRYREGLELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 201 ~~~vs~~~~~~~e~~~lvG~sGsGKSTL~~ll~g 234 (602)
++++...+.+| +++.|.|++|+||||++.-++-
T Consensus 25 lD~~~~G~~~G-~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 25 INDKTLGARGG-EVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp HHHHHCSBCTT-CEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHhcCCCCC-eEEEEEeCCCCCHHHHHHHHHH
Confidence 44443335566 9999999999999999876664
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.51 E-value=0.0068 Score=51.79 Aligned_cols=61 Identities=10% Similarity=0.055 Sum_probs=34.2
Q ss_pred hhHHHHHHHHHHhhCCCeEEEecccccCCh-hHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 353 GQRQLICLARALLRKTKILILDEATAAIDL-ETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 353 Gq~Qrl~lAral~~~p~iliLDEpts~LD~-~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
.+......+...+.++++++++=....-+. .......+.++....++.+|+|....+....
T Consensus 66 ~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~ 127 (161)
T d2gj8a1 66 VERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGE 127 (161)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCC
T ss_pred chhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhh
Confidence 444555556666778887665432222222 2233334455555556788888888776544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.49 E-value=0.00044 Score=60.28 Aligned_cols=27 Identities=19% Similarity=0.219 Sum_probs=23.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPA 239 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~ 239 (602)
.+++|+|.+|||||||++-|...+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 468999999999999999888776644
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.48 E-value=0.00056 Score=61.04 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
=++||.|++|||||||.+.|.-.+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4699999999999999999986554
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.48 E-value=0.00053 Score=60.43 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=22.1
Q ss_pred eeEEEECCCCCChHHHHHHHHhccC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+|+|+|+.|||||||++.|+..+.
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999998763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=96.43 E-value=0.00072 Score=58.99 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=24.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
++|-.|.|+|+.||||||+.+.|+.-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3566799999999999999999987663
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.42 E-value=0.00075 Score=58.88 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=22.8
Q ss_pred eeEEEECCCCCChHHHHHHHHhccC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+|.|.|++||||||+.+.|+..+.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999875
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.42 E-value=0.0015 Score=59.22 Aligned_cols=42 Identities=24% Similarity=0.354 Sum_probs=31.4
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCC--CCceEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~--~~G~I~i~g~~i~ 531 (602)
.+|-+|.|+|.+|||||||.+.|...+.. ..-.+.+||.+++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR 65 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 65 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHH
Confidence 46778999999999999999999754421 1235778886554
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.39 E-value=0.00063 Score=60.96 Aligned_cols=22 Identities=32% Similarity=0.578 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+|+|++|+|||||++.|+|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 4999999999999999999985
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.36 E-value=0.00072 Score=59.04 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.|.|++||||||+.+.|+..+.
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6789999999999999999999874
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.34 E-value=0.0006 Score=60.05 Aligned_cols=24 Identities=33% Similarity=0.465 Sum_probs=22.1
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..++|+|++|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999999865
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=96.33 E-value=0.00013 Score=65.78 Aligned_cols=29 Identities=24% Similarity=0.323 Sum_probs=22.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.+.+.+| +..|+|+|||||||++.+|.-.
T Consensus 19 ~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 19 TFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 3444444 6889999999999999999644
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.32 E-value=0.00094 Score=56.89 Aligned_cols=32 Identities=22% Similarity=0.238 Sum_probs=24.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.|.|+|++|||||||++.|..-. .|...++..
T Consensus 4 lIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d 35 (152)
T d1ly1a_ 4 IILTIGCPGSGKSTWAREFIAKN---PGFYNINRD 35 (152)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---TTEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhC---CCCEEechH
Confidence 57899999999999999886533 356666643
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.32 E-value=0.0008 Score=57.37 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=19.3
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++.|+|++||||||+++.|..
T Consensus 3 klIii~G~pGsGKTTla~~L~~ 24 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIA 24 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5788999999999999997754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.31 E-value=0.0009 Score=58.10 Aligned_cols=32 Identities=28% Similarity=0.359 Sum_probs=26.0
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCe
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGV 528 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~ 528 (602)
.+.|+|+.||||||+++.|+..++ +.+.++|.
T Consensus 4 lI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d 35 (176)
T d2bdta1 4 LYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGD 35 (176)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CCEEEehH
Confidence 588999999999999999998774 45555553
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.31 E-value=0.00078 Score=58.53 Aligned_cols=25 Identities=32% Similarity=0.405 Sum_probs=22.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.|+|++||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999998763
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00095 Score=58.04 Aligned_cols=26 Identities=19% Similarity=0.276 Sum_probs=23.3
Q ss_pred cceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.+.++.|+|++||||||+.+.|+..+
T Consensus 5 ~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 5 DHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999999999999876
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.00079 Score=57.84 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=21.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|+|++||||||+.+.|+-.+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998754
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.27 E-value=0.00029 Score=64.60 Aligned_cols=34 Identities=26% Similarity=0.247 Sum_probs=22.2
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEE
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTII 524 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~ 524 (602)
+|.+..++|++|+|||||+++|.|-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 4677889999999999999999998877788886
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.27 E-value=0.00093 Score=60.75 Aligned_cols=23 Identities=30% Similarity=0.635 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999997665
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.27 E-value=0.0078 Score=56.15 Aligned_cols=24 Identities=33% Similarity=0.346 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.+.||+|||||++++.|+..+
T Consensus 46 ~~iLL~GppGtGKT~la~~iA~~~ 69 (256)
T d1lv7a_ 46 KGVLMVGPPGTGKTLLAKAIAGEA 69 (256)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEeeCCCCCCccHHHHHHHHHc
Confidence 448899999999999999999865
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.25 E-value=0.00097 Score=58.73 Aligned_cols=31 Identities=13% Similarity=0.158 Sum_probs=25.1
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCceE
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I 523 (602)
.+|+|.|+.||||||+++.|+..+......+
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 3689999999999999999988776544443
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.00096 Score=58.01 Aligned_cols=24 Identities=21% Similarity=0.437 Sum_probs=22.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++.|+|++||||||+.+.|+.-+
T Consensus 7 ~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 7 HIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999998765
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.20 E-value=0.0011 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.|.|+|++||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999998776
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.19 E-value=0.0011 Score=57.10 Aligned_cols=25 Identities=52% Similarity=0.489 Sum_probs=22.3
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
|=+|+++|+.|+|||||++.|+|.-
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4479999999999999999999863
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.19 E-value=0.001 Score=57.78 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|+.||||||+++.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.00061 Score=60.74 Aligned_cols=26 Identities=31% Similarity=0.498 Sum_probs=23.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|-+|.++|++||||||+.+.|+..+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999998755
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.17 E-value=0.00099 Score=57.90 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.2
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|++||||||+.+.|+--+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.16 E-value=0.0011 Score=58.02 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-++.|+|.+||||||+.+.|+.-+
T Consensus 7 ~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 7 FTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0012 Score=59.99 Aligned_cols=23 Identities=35% Similarity=0.716 Sum_probs=20.5
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++||.|++||||||+.+.|.-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.08 E-value=0.00061 Score=62.41 Aligned_cols=32 Identities=28% Similarity=0.296 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceEE
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTII 244 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~ 244 (602)
...+++|+||+|||||++.|.+-.....|+|.
T Consensus 98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp SEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 67889999999999999999997776667665
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.07 E-value=0.0011 Score=58.42 Aligned_cols=28 Identities=14% Similarity=0.286 Sum_probs=23.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPAD 240 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~ 240 (602)
.+++|.|++||||||+++.|+..+....
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 5799999999999999999987665443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.028 Score=52.42 Aligned_cols=44 Identities=9% Similarity=0.190 Sum_probs=28.4
Q ss_pred HhhCCCeEEEecccccC-----ChhHHHHHHHHHHHhc--cccEEEEeeec
Q psy3001 364 LLRKTKILILDEATAAI-----DLETDDLIQSTIRSEF--AHCTVLTIAHR 407 (602)
Q Consensus 364 l~~~p~iliLDEpts~L-----D~~~~~~i~~~l~~~~--~~~tvi~itH~ 407 (602)
-..+|+++|+|--++.. |......+...++.+. .++++|++.|-
T Consensus 129 ~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 129 AAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred hccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 45789999999665432 2333345555555543 36899999883
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.0014 Score=57.18 Aligned_cols=23 Identities=43% Similarity=0.476 Sum_probs=20.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.|+|+|+.|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999854
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.03 E-value=0.0013 Score=58.75 Aligned_cols=23 Identities=30% Similarity=0.481 Sum_probs=21.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
..++|+|++|+|||||++.|.|.
T Consensus 24 ~~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHhcCC
Confidence 45999999999999999999984
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.03 E-value=0.0016 Score=58.89 Aligned_cols=27 Identities=33% Similarity=0.338 Sum_probs=23.5
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|..+.|+||+|||||||.+.|+-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 477899999999999999999977654
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.99 E-value=0.0013 Score=57.94 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|+|+|++|+|||||++.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999985
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.96 E-value=0.0016 Score=62.45 Aligned_cols=46 Identities=22% Similarity=0.345 Sum_probs=33.8
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCccccccch
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPVLFSGTL 556 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~lf~~Tv 556 (602)
+|||.|++||||||+.+.|..++....+ ..++..|++|-+..+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence 6999999999999999999988752211 124677777777665444
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.96 E-value=0.0084 Score=56.26 Aligned_cols=24 Identities=29% Similarity=0.275 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.|.||+|+|||+|++.+++.+
T Consensus 42 ~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 42 KGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CeEEEECCCCCcchhHHHHHHHHh
Confidence 348899999999999999999975
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.95 E-value=0.001 Score=58.92 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.1
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|||+|++++|||||++.|+|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999874
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.94 E-value=0.026 Score=51.57 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=19.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++.|.|++|||||||+.-++--
T Consensus 27 sl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 27 SIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 88999999999999999666544
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.93 E-value=0.0017 Score=56.86 Aligned_cols=22 Identities=41% Similarity=0.549 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|+|+|.+|+|||||++.|+|.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.93 E-value=0.0015 Score=56.85 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.6
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-.++|.|++||||||+.+.|+--+
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHh
Confidence 568999999999999999998765
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.89 E-value=0.0019 Score=56.78 Aligned_cols=22 Identities=41% Similarity=0.601 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+|+|++|+|||||++.|+|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999986
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.83 E-value=0.0018 Score=57.09 Aligned_cols=24 Identities=17% Similarity=0.353 Sum_probs=20.8
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+.|+|||||||+||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 568999999999999999887544
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.82 E-value=0.0031 Score=55.59 Aligned_cols=22 Identities=45% Similarity=0.588 Sum_probs=20.1
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+||+|.+|+|||||++.|.|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 3899999999999999999874
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0013 Score=57.94 Aligned_cols=21 Identities=57% Similarity=0.738 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHHhc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~ 515 (602)
|||+|++++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.81 E-value=0.0021 Score=61.82 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
...|+|+|||||||++.+|.-+
T Consensus 26 lnvlvG~NgsGKS~iL~Ai~~~ 47 (308)
T d1e69a_ 26 VTAIVGPNGSGKSNIIDAIKWV 47 (308)
T ss_dssp EEEEECCTTTCSTHHHHHHHHT
T ss_pred eEEEECCCCCcHHHHHHHHHHH
Confidence 6799999999999999999543
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.78 E-value=0.0026 Score=58.62 Aligned_cols=23 Identities=39% Similarity=0.520 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|+|+.|||||||++.|.+..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998754
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.78 E-value=0.002 Score=56.73 Aligned_cols=21 Identities=33% Similarity=0.445 Sum_probs=19.7
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
++|+|++|+|||||++.|.|-
T Consensus 3 I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 3 IIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 799999999999999999984
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.77 E-value=0.0018 Score=57.51 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.0
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++|+|||||||+||++.|....
T Consensus 3 pIvl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999887654
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.016 Score=53.40 Aligned_cols=46 Identities=15% Similarity=0.346 Sum_probs=33.9
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
+.+++++||+- .|.......+.+.+.....+..+|+++++.+.+..
T Consensus 131 ~~~iiiide~d-~l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i~~ 176 (252)
T d1sxje2 131 RYKCVIINEAN-SLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIA 176 (252)
T ss_dssp CCEEEEEECTT-SSCHHHHHHHHHHHHHSTTTEEEEEEESCSCSSCH
T ss_pred CceEEEecccc-ccccccchhhhcccccccccccceeeeccccchhh
Confidence 56799999984 46777777777777665556678999999876643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.70 E-value=0.0022 Score=55.50 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.9
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.|+|++||||||+.+.|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7889999999999999998765
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.69 E-value=0.013 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.332 Sum_probs=14.8
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++++|||+|+||||.+-=|+..+
T Consensus 13 ~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 13 YVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp EEEEEECSCCC----HHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999998764444433
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.69 E-value=0.0017 Score=57.40 Aligned_cols=21 Identities=38% Similarity=0.515 Sum_probs=19.7
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
|||+|++++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.68 E-value=0.0024 Score=56.60 Aligned_cols=22 Identities=41% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
|.|+||+|||||||++.|+...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6899999999999999997654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.65 E-value=0.0024 Score=56.84 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++.|+||.||||||+.+.|+--+
T Consensus 7 ~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999998765
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.65 E-value=0.0023 Score=60.03 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.1
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.|+|+|++|+|||||++.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999963
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=95.65 E-value=0.0025 Score=57.57 Aligned_cols=25 Identities=40% Similarity=0.462 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.|+||||||||||.+.|.-.++
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 6789999999999999998876554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.63 E-value=0.004 Score=60.29 Aligned_cols=31 Identities=29% Similarity=0.485 Sum_probs=27.3
Q ss_pred EEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
+.|+|++||||||+++.|.+.++|..=-|.+
T Consensus 169 ili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 169 VIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp EEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred EEEEeeccccchHHHHHHhhhcccccceeec
Confidence 8999999999999999999999886655555
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.62 E-value=0.0026 Score=55.40 Aligned_cols=22 Identities=45% Similarity=0.510 Sum_probs=19.9
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.|+|+|+.|+|||||++.|+|.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999984
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.60 E-value=0.0029 Score=54.41 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=20.3
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+|||..|+|||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.59 E-value=0.0024 Score=56.88 Aligned_cols=22 Identities=45% Similarity=0.598 Sum_probs=19.3
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++|+||||||||||++.|.-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999887643
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.55 E-value=0.0031 Score=55.91 Aligned_cols=26 Identities=23% Similarity=0.364 Sum_probs=22.7
Q ss_pred cceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|-++.|+||.||||||+.+.|+--+
T Consensus 2 ~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 2 KGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHh
Confidence 56788899999999999999999543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.55 E-value=0.0014 Score=57.67 Aligned_cols=24 Identities=38% Similarity=0.448 Sum_probs=21.1
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
-+|+|+|++++|||||+++|+|.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 359999999999999999998863
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.55 E-value=0.003 Score=56.26 Aligned_cols=25 Identities=24% Similarity=0.348 Sum_probs=22.0
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
..+|.|+||.||||||+.+.|+--+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999998655
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.54 E-value=0.0026 Score=55.48 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.|+|++||||||+.+.|+--+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 346789999999999999998644
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.54 E-value=0.003 Score=63.44 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=22.3
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
.+.+..+...+|+|+|||||||++.+|.
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445445578999999999999999983
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.53 E-value=0.0032 Score=55.39 Aligned_cols=23 Identities=17% Similarity=0.369 Sum_probs=20.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.+.|+||+|+|||||++.|+...
T Consensus 5 ~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 5 TLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred cEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999998643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.53 E-value=0.0022 Score=56.36 Aligned_cols=21 Identities=57% Similarity=0.738 Sum_probs=19.9
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
|||+|++++|||||++.|+|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999875
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.52 E-value=0.0021 Score=56.30 Aligned_cols=24 Identities=25% Similarity=0.191 Sum_probs=21.0
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
-+|+++|++|+|||||++.|.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998854
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.50 E-value=0.018 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.2
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.+.||.|+|||++++.++..+
T Consensus 43 ~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 43 KGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEecCCCCChhHHHHHHHHHc
Confidence 348999999999999999999854
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.47 E-value=0.0034 Score=53.54 Aligned_cols=22 Identities=27% Similarity=0.289 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.47 E-value=0.0033 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.2
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+.|+|+.||||||+.++|+..+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999998766
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=95.47 E-value=0.0011 Score=57.02 Aligned_cols=22 Identities=36% Similarity=0.505 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|+++|++|+|||||++.|+|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.46 E-value=0.0033 Score=56.45 Aligned_cols=23 Identities=30% Similarity=0.280 Sum_probs=21.0
Q ss_pred eeEEEECCCCCChHHHHHHHHhc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
-+|+|+|+.|||||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999875
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.45 E-value=0.0016 Score=57.88 Aligned_cols=24 Identities=33% Similarity=0.510 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-++.|+|++||||||+.+.|+..+
T Consensus 20 ~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 20 CTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp EEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 578899999999999999998754
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.44 E-value=0.0036 Score=53.32 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=20.0
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.|+|+.|+|||||++.+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5889999999999999999864
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=95.43 E-value=0.0033 Score=55.14 Aligned_cols=22 Identities=41% Similarity=0.670 Sum_probs=20.7
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.43 E-value=0.0031 Score=56.00 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
++||+|+.||||||+++.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.42 E-value=0.0033 Score=54.95 Aligned_cols=22 Identities=41% Similarity=0.619 Sum_probs=20.3
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999983
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.41 E-value=0.0031 Score=54.58 Aligned_cols=23 Identities=30% Similarity=0.463 Sum_probs=20.1
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.++|++||||||+.++|+.-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998755
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=95.40 E-value=0.0034 Score=55.69 Aligned_cols=22 Identities=36% Similarity=0.635 Sum_probs=19.7
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
=++||+|++||||||+++.|.-
T Consensus 4 ~IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 4 IIIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999864
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0034 Score=56.00 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=22.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++.|+||.||||||+.+.|+.-|
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 789999999999999999999876
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.38 E-value=0.0036 Score=55.73 Aligned_cols=21 Identities=48% Similarity=0.661 Sum_probs=18.8
Q ss_pred EEEECCCCCChHHHHHHHHhc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~ 515 (602)
|.|+||+|||||||++.|+..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~ 23 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQE 23 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 679999999999999998654
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=95.37 E-value=0.0035 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.178 Sum_probs=20.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-.++|||++|||||||++.+.+-.
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458999999999999999998753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.37 E-value=0.0038 Score=56.10 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.5
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.|.++|+.||||||+.+.|+..+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999997654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=95.32 E-value=0.0038 Score=54.91 Aligned_cols=22 Identities=36% Similarity=0.631 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|||+|+..||||||++.|.|.
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEEeCCCCcHHHHHHHHHHh
Confidence 4899999999999999999975
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.32 E-value=0.0039 Score=54.27 Aligned_cols=23 Identities=26% Similarity=0.459 Sum_probs=20.1
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.+.++|+.||||||+.+.|+-.+
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.30 E-value=0.0031 Score=61.17 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.8
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
-+|||+|+.|||||||+..|.+.+..
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 36999999999999999999887643
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=95.29 E-value=0.0036 Score=58.67 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++|+|++|+|||||+|.|.|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=95.25 E-value=0.0034 Score=55.28 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+++.|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578899999999999999988764
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.22 E-value=0.0031 Score=60.46 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
=++||.|++||||||+.+.|..++.
T Consensus 81 ~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 4699999999999999999988764
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.0041 Score=53.76 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.++|+.||||||+.++|+..+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 36788999999999999998766
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=95.20 E-value=0.005 Score=56.61 Aligned_cols=23 Identities=39% Similarity=0.587 Sum_probs=20.4
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++|+|+.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998654
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.18 E-value=0.0045 Score=55.11 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.9
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++.|+||.||||||+.+.|+.-+
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~ 32 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDY 32 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999876
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.17 E-value=0.0042 Score=55.32 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=22.9
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.-.|+|.|..||||||+++.|...++
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34699999999999999999998763
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.16 E-value=0.016 Score=57.70 Aligned_cols=47 Identities=19% Similarity=0.325 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccc
Q psy3001 358 ICLARALLRKTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNT 410 (602)
Q Consensus 358 l~lAral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~ 410 (602)
-++..+|=++|+++++.|.. |+++.... ++....|..|+..-|--+.
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a---~~aa~tGhlV~tTlHa~~a 264 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIA---VQASLTGHLVMSTLHTNTA 264 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHH---HHHHHTTCEEEEEECCSSS
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHH---HHHHhcCCeEEEEeccCch
Confidence 35666778899999999964 55555433 3333457778877775443
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.16 E-value=0.0042 Score=55.02 Aligned_cols=23 Identities=22% Similarity=0.156 Sum_probs=20.7
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|.||.||||||+.+.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.16 E-value=0.0043 Score=55.69 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
-+++++|.+||||||+.+.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999997553
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=95.13 E-value=0.0044 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.268 Sum_probs=19.3
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++|+|++|||||||++-+.+-
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999988763
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=95.11 E-value=0.0048 Score=55.55 Aligned_cols=20 Identities=30% Similarity=0.591 Sum_probs=18.5
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~ 513 (602)
+|||+|..||||||+++.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999885
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=95.11 E-value=0.0042 Score=53.29 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=19.3
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
++|||.+|+|||||++.+.+-
T Consensus 8 I~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999988764
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.10 E-value=0.0044 Score=55.54 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.9
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
..++|+|++|||||||++.|.+-
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=95.10 E-value=0.0043 Score=54.95 Aligned_cols=23 Identities=22% Similarity=0.208 Sum_probs=20.6
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|.||.||||||+++.|+--+
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997655
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.08 E-value=0.005 Score=53.75 Aligned_cols=22 Identities=41% Similarity=0.486 Sum_probs=19.7
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++.++|++||||||+.+-++.
T Consensus 15 ~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 15 EVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp CEEEEECCTTSSHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 7899999999999999987753
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.07 E-value=0.0052 Score=61.46 Aligned_cols=23 Identities=43% Similarity=0.543 Sum_probs=21.1
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.|||+|++|+|||||+++|.|..
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999999954
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0049 Score=54.74 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-++.|+||.||||||..+.|+--+
T Consensus 2 ~iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 2 LVVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998755
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.02 E-value=0.0047 Score=54.07 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=19.9
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.|+|+.||||||+.+.|+--+
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6799999999999999997765
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.02 E-value=0.0045 Score=55.06 Aligned_cols=24 Identities=25% Similarity=0.218 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+++|-|..||||||+++.|...+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 369999999999999999999865
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.02 E-value=0.005 Score=52.43 Aligned_cols=22 Identities=27% Similarity=0.235 Sum_probs=19.9
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++++|++|+|||||++.+.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999874
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.02 E-value=0.0056 Score=53.60 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|+.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0057 Score=54.26 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|.|+||.||||||.++.|+--+
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998654
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.98 E-value=0.0049 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.351 Sum_probs=21.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
++.|.|+.||||||+++.|+..++
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999998774
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0033 Score=55.16 Aligned_cols=24 Identities=38% Similarity=0.314 Sum_probs=21.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-.|+|+|++++|||||++.|.+.-
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998853
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=94.93 E-value=0.0056 Score=55.09 Aligned_cols=21 Identities=29% Similarity=0.632 Sum_probs=19.0
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
++||+|..||||||+++++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.92 E-value=0.0059 Score=52.53 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|+|+.|+|||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999998853
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.89 E-value=0.053 Score=50.29 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.2
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.+.||.|+|||++++.++...
T Consensus 39 ~giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 39 RGILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeEEecCCCCCchHHHHHHHHHh
Confidence 348899999999999999999864
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.88 E-value=0.047 Score=48.73 Aligned_cols=24 Identities=29% Similarity=0.335 Sum_probs=19.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++++||+|+||||.+-=|+..+
T Consensus 11 ~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 11 NLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999998876555544
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.85 E-value=0.0066 Score=53.31 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|.|+|+.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998766
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.84 E-value=0.006 Score=55.34 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.2
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+++|-||+||||||+.+.|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478899999999999999998653
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.82 E-value=0.03 Score=51.29 Aligned_cols=45 Identities=13% Similarity=0.175 Sum_probs=34.7
Q ss_pred CCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 368 TKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 368 p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
.+++|+||.= .|.......+...+.....+..+|++|++.+-+..
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~ 160 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 160 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccCh
Confidence 5699999984 47777777777777665566789999999877653
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.79 E-value=0.007 Score=56.70 Aligned_cols=48 Identities=29% Similarity=0.414 Sum_probs=31.2
Q ss_pred eEEEECCCCCChHHHHHHHH---hccCCCCceEEECCeecCCCChhhhhccce
Q psy3001 494 QVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVDIRTLGLHTLRSRLT 543 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~---g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~ 543 (602)
.|||+|+.|||||||+.+|+ |.. ...|++. +|.......+.+..+++.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~t 54 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTT 54 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCe
Confidence 48999999999999999995 333 2345543 344444445555555544
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.76 E-value=0.0052 Score=54.63 Aligned_cols=33 Identities=18% Similarity=0.272 Sum_probs=26.2
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
+++.+|.|+||.||||||+.+.|+.-+ |-..++
T Consensus 6 ~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 6 KKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 345678999999999999999998765 444444
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.75 E-value=0.0066 Score=53.29 Aligned_cols=23 Identities=22% Similarity=0.310 Sum_probs=20.6
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|+.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999999765
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.75 E-value=0.015 Score=50.23 Aligned_cols=28 Identities=36% Similarity=0.547 Sum_probs=22.6
Q ss_pred eEEEECCCCCChHHHHHHHHh-----ccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-----IIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-----~~~~~~G 521 (602)
+|+++|..|+|||||++.+.+ .+.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 589999999999999998775 3455555
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.75 E-value=0.0074 Score=56.40 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=27.8
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
.+-++||+|||||||+++|++.+. .+-+.+++-++
T Consensus 34 ~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~ 68 (273)
T d1gvnb_ 34 AFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 68 (273)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHHH
Confidence 478999999999999999999874 34566765333
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.04 Score=49.27 Aligned_cols=46 Identities=11% Similarity=0.154 Sum_probs=33.2
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
+.+++|+||+ -.+...+...+.+.+.+-..+..+|++|++++.+..
T Consensus 108 ~~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~ 153 (207)
T d1a5ta2 108 GAKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPERLLA 153 (207)
T ss_dssp SCEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCH
T ss_pred ccceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhh
Confidence 4679999987 455566677777777665556678889999876543
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.71 E-value=0.0069 Score=52.58 Aligned_cols=22 Identities=32% Similarity=0.362 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.|+|..|||||||++.|.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=94.71 E-value=0.0072 Score=54.78 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=20.8
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|+|-||.||||||+.+.|+--+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 478999999999999999976543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.68 E-value=0.0076 Score=52.55 Aligned_cols=38 Identities=24% Similarity=0.257 Sum_probs=27.8
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
+..+.|-++|+.||||||+++.++.. .|-+.++..++.
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~D~~~ 49 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNRDTLG 49 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEHHHHC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEchHHHH
Confidence 34567899999999999999988643 345666654444
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.65 E-value=0.0025 Score=54.60 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.2
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3799999999999999999984
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0089 Score=53.53 Aligned_cols=28 Identities=14% Similarity=0.202 Sum_probs=24.7
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
-+.+|+.+-|.|++|||||||+.-++.-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 3789999999999999999999888753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.63 E-value=0.0048 Score=58.28 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=18.7
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|||+|.+||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999887764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0074 Score=54.57 Aligned_cols=25 Identities=32% Similarity=0.543 Sum_probs=22.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|.||.||||||+.+.|+--|.
T Consensus 4 piI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 4 PVITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 5799999999999999999997653
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.61 E-value=0.0079 Score=54.18 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|||+|..||||||.++.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 589999999999999998863
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.55 E-value=0.0083 Score=53.27 Aligned_cols=24 Identities=21% Similarity=0.415 Sum_probs=22.0
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++.|+||.||||||+.+.|+--|
T Consensus 9 ~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 9 KIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 679999999999999999998765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.54 E-value=0.0088 Score=52.81 Aligned_cols=24 Identities=25% Similarity=0.317 Sum_probs=20.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-.+.|+||.||||||+.+.|+--+
T Consensus 4 ~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 4 VRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 346689999999999999999544
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=94.51 E-value=0.0075 Score=56.36 Aligned_cols=25 Identities=32% Similarity=0.481 Sum_probs=22.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.+.||+|||||||++.|++.+.
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4588999999999999999999874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=94.51 E-value=0.01 Score=50.92 Aligned_cols=23 Identities=17% Similarity=0.146 Sum_probs=20.4
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++++|+.|||||||++.+.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 38999999999999999998753
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=94.51 E-value=0.0052 Score=57.98 Aligned_cols=25 Identities=24% Similarity=0.550 Sum_probs=19.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++||.|+|||||||+.+.|.-.+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHh
Confidence 5899999999999999999887654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.50 E-value=0.0086 Score=52.33 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|+.||||||..+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 36799999999999999998654
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.46 E-value=0.0084 Score=52.52 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=19.8
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+||+|...||||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=94.45 E-value=0.0085 Score=52.35 Aligned_cols=23 Identities=17% Similarity=0.273 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|+.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999997655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=94.43 E-value=0.057 Score=48.35 Aligned_cols=22 Identities=23% Similarity=0.259 Sum_probs=17.5
Q ss_pred ceEEEEeccCCChhHHH-HHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLT-LALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~-~ll~g 234 (602)
.++++|||+|+||||.+ |+-..
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~ 34 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKM 34 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 57999999999999876 44433
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=94.43 E-value=0.011 Score=53.08 Aligned_cols=40 Identities=23% Similarity=0.229 Sum_probs=26.6
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
++.++++|||||+||||.+-=|+..+.-..-+|.+=..|.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~~g~kV~lit~Dt 44 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 44 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEecc
Confidence 4567899999999999886666666553333454433343
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.37 E-value=0.0071 Score=55.48 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.4
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+..|+|-|+-||||||+++.|...++
T Consensus 2 ~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 2 IKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 56799999999999999999998774
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=94.36 E-value=0.0098 Score=54.36 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999875
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.35 E-value=0.0099 Score=53.23 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=20.0
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|+|+|+.|+|||||++.|.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999873
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.35 E-value=0.0087 Score=52.38 Aligned_cols=22 Identities=32% Similarity=0.505 Sum_probs=20.0
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.|+|+.||||||+.+.|+--+
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999998765
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=94.35 E-value=0.01 Score=53.64 Aligned_cols=23 Identities=35% Similarity=0.525 Sum_probs=20.7
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|-||.||||||+.+.|+--+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.33 E-value=0.012 Score=58.58 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=24.5
Q ss_pred eeEEEECCCCCChHHHHHHHHhccCCCCce
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRIIEPADGT 522 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~~~~~G~ 522 (602)
-.+-|+|||||||||.+.++....+.....
T Consensus 159 GliLvtGpTGSGKSTTl~~~l~~~~~~~~~ 188 (401)
T d1p9ra_ 159 GIILVTGPTGSGKSTTLYAGLQELNSSERN 188 (401)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred ceEEEEcCCCCCccHHHHHHhhhhcCCCce
Confidence 358899999999999999999977544344
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.011 Score=59.11 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEeccCCChhHHHHHHhcccC
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+||+|++|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999643
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.29 E-value=0.011 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|.|+.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999997655
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=94.25 E-value=0.0099 Score=51.51 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=19.8
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++++|..|||||||++.+.+-
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~ 38 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMN 38 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998873
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=94.23 E-value=0.01 Score=53.43 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.3
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
++||+|..||||||..+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999998864
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.22 E-value=0.011 Score=50.95 Aligned_cols=21 Identities=24% Similarity=0.464 Sum_probs=19.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.20 E-value=0.011 Score=53.37 Aligned_cols=28 Identities=21% Similarity=0.207 Sum_probs=24.4
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
++|-.|+|.|+-||||||+++.|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688899999999999999999987654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.12 E-value=0.085 Score=47.40 Aligned_cols=22 Identities=23% Similarity=0.490 Sum_probs=18.7
Q ss_pred cCCceEEEEeccCCChhHHHHHH
Q psy3001 210 EGLELVGIVGRTGAGKSSLTLAL 232 (602)
Q Consensus 210 ~~~e~~~lvG~sGsGKSTL~~ll 232 (602)
+| +++.|.|++|+|||||+.-+
T Consensus 25 ~G-~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 25 IG-RSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp TT-SEEEEEESTTSSHHHHHHHH
T ss_pred CC-eEEEEEeCCCCCHHHHHHHH
Confidence 44 89999999999999998543
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.09 E-value=0.013 Score=50.84 Aligned_cols=21 Identities=38% Similarity=0.564 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++++|+.|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999999875
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=94.07 E-value=0.012 Score=56.61 Aligned_cols=35 Identities=20% Similarity=0.429 Sum_probs=27.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
-+.++||+|+|||+|+|+|+..+. .--+.+++-.+
T Consensus 51 ~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 51 NILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred eEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 468999999999999999999864 23566665444
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=94.05 E-value=0.013 Score=50.27 Aligned_cols=21 Identities=19% Similarity=0.355 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|+.|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998865
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.012 Score=55.39 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|||.|+.|||||||...|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 6899999999999999877544
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=94.00 E-value=0.015 Score=52.26 Aligned_cols=34 Identities=24% Similarity=0.398 Sum_probs=23.5
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
-.++++|||||+||||.+-=|+..+.-..-+|.+
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~~~g~kV~l 42 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVML 42 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEE
Confidence 3579999999999998766666555533224544
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.98 E-value=0.014 Score=51.68 Aligned_cols=24 Identities=21% Similarity=0.538 Sum_probs=21.5
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
-++.|+|+.||||||+.+.|+--+
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 368899999999999999998765
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.92 E-value=0.019 Score=48.79 Aligned_cols=32 Identities=34% Similarity=0.431 Sum_probs=27.4
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
...++|.+|.+.|+=||||||+.|.++.-+-.
T Consensus 28 ~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 28 LHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp HCCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 34568889999999999999999999987643
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=93.87 E-value=0.01 Score=57.41 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
-++||+|+.|||||||+..+.+.+..
T Consensus 55 ~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 55 LRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 67999999999999999999876543
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.85 E-value=0.015 Score=50.82 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=20.5
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
++.|+|+.||||||+.+.|+-.+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46799999999999999998765
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.77 E-value=0.013 Score=51.77 Aligned_cols=23 Identities=22% Similarity=0.468 Sum_probs=20.6
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|+.||||||+.+.|+--|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.016 Score=50.27 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=19.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++++|..|+|||||++.+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.73 E-value=0.013 Score=50.90 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.6
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|+.|+|||||++.+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999976
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.70 E-value=0.017 Score=49.57 Aligned_cols=21 Identities=29% Similarity=0.458 Sum_probs=18.8
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.67 E-value=0.013 Score=52.36 Aligned_cols=21 Identities=33% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
-|+|+|+.|+|||||++.+.+
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 489999999999999999876
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.61 E-value=0.034 Score=47.78 Aligned_cols=37 Identities=38% Similarity=0.685 Sum_probs=26.8
Q ss_pred eEEEECCCCCChHHHHHHHHh-----ccCCCCce-----EEECCeec
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-----IIEPADGT-----IIIDGVDI 530 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-----~~~~~~G~-----I~i~g~~i 530 (602)
+|.++|..|+|||||++.+.. .+.|+-|. +.++|.++
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~~ 52 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEV 52 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccccccccccc
Confidence 689999999999999998764 34455453 44666543
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.60 E-value=0.011 Score=53.98 Aligned_cols=25 Identities=32% Similarity=0.442 Sum_probs=22.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..++|-|+-||||||+++.|...+.
T Consensus 3 k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 3 KKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp EEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 6799999999999999999998763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.54 E-value=0.015 Score=50.73 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=20.3
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.|+|+.||||||+.+.|+--+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998765
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=93.54 E-value=0.17 Score=45.18 Aligned_cols=45 Identities=11% Similarity=0.180 Sum_probs=31.8
Q ss_pred HhhCCCeEEEecccccC-ChhHHHHHHHHHHHhc-cccEEEEeeecc
Q psy3001 364 LLRKTKILILDEATAAI-DLETDDLIQSTIRSEF-AHCTVLTIAHRL 408 (602)
Q Consensus 364 l~~~p~iliLDEpts~L-D~~~~~~i~~~l~~~~-~~~tvi~itH~l 408 (602)
.+.+.++|++|+--.-. ++..+..+...+.... .++.+|+.+...
T Consensus 94 ~~~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 94 MYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp HHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred HHhhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 46689999999875554 4667777888887754 456666666553
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.51 E-value=0.017 Score=49.62 Aligned_cols=21 Identities=43% Similarity=0.743 Sum_probs=19.4
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.45 E-value=0.031 Score=48.12 Aligned_cols=29 Identities=31% Similarity=0.532 Sum_probs=22.9
Q ss_pred eEEEECCCCCChHHHHHHHHh-----ccCCCCce
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-----IIEPADGT 522 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-----~~~~~~G~ 522 (602)
+|.|+|..|+|||||++.+.+ -+.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 589999999999999998765 33455553
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.45 E-value=0.015 Score=53.30 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=24.0
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G 241 (602)
.+.+.||.|+||||++++++..+....+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~~ 64 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNIH 64 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCcc
Confidence 4789999999999999999998775533
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.44 E-value=0.45 Score=43.73 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=26.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCce-EEECCe
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGT-IIIDGV 248 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~-I~i~g~ 248 (602)
.++-|.|++|||||||+-.++....-..|. +++|..
T Consensus 55 ~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 55 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 789999999999999997777665433343 455543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.41 E-value=0.02 Score=50.10 Aligned_cols=21 Identities=38% Similarity=0.553 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++.+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998875
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.40 E-value=0.029 Score=48.26 Aligned_cols=20 Identities=45% Similarity=0.752 Sum_probs=17.9
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.019 Score=51.55 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=23.5
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|..|+|-|+-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 477899999999999999999987553
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.02 Score=50.15 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++.+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999999875
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.38 E-value=0.018 Score=49.35 Aligned_cols=22 Identities=27% Similarity=0.536 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.++|..|+|||||++.+.+-
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999988753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=93.36 E-value=0.059 Score=47.73 Aligned_cols=46 Identities=7% Similarity=0.180 Sum_probs=36.8
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID 413 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~ 413 (602)
+.+|+|+||+ -.|...+...+.+.|.+-.++..+|++|++.+.+..
T Consensus 79 ~~KviIId~a-d~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~ 124 (198)
T d2gnoa2 79 TRKYVIVHDC-ERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLP 124 (198)
T ss_dssp SSEEEEETTG-GGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCH
T ss_pred CCEEEEEeCc-cccchhhhhHHHHHHhCCCCCceeeeccCChhhCHH
Confidence 4589999996 667788888888888776667889999999876643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=93.35 E-value=0.018 Score=49.85 Aligned_cols=21 Identities=29% Similarity=0.366 Sum_probs=19.1
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|+.|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999998865
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=93.34 E-value=0.017 Score=49.53 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=18.5
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 378999999999999997754
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.28 E-value=0.017 Score=49.77 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++-+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 89999999999999997764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=93.28 E-value=0.018 Score=52.59 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.5
Q ss_pred EEEECCCCCChHHHHHHHHhccCCC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIEPA 519 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~~~ 519 (602)
+-+.||.|+||||++++|+..+...
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCcHHHHHHHHHhccCCC
Confidence 6799999999999999999887654
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.26 E-value=0.017 Score=52.57 Aligned_cols=52 Identities=21% Similarity=0.330 Sum_probs=32.8
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeeccccccc--CCeEEE
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTIID--SDRVLV 419 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~~--~d~i~~ 419 (602)
++.++++||.- .+.......+...+........+|+++++.+.+.. .+|..+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i~~~l~sR~~~ 162 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAI 162 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSCHHHHHTEEE
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhchHhHhCcccc
Confidence 56799999963 33344445555666555555678888888776654 345433
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.24 E-value=0.018 Score=49.89 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.8
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|++|+|||||++-+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 379999999999999998765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.21 E-value=0.019 Score=54.04 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
=++||.|+.|||||||.+.|.-.
T Consensus 28 ~iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 28 LFIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEeECCCCCCHHHHHHHHHHH
Confidence 36899999999999999877543
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.033 Score=47.93 Aligned_cols=21 Identities=38% Similarity=0.646 Sum_probs=18.1
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++|+|.+|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999986654
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.21 E-value=0.023 Score=48.78 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.7
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.++|..|+|||||++.+.+-
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5899999999999999998763
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.19 E-value=0.022 Score=49.20 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.++|..|+|||||++.+.+-
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHhcC
Confidence 5899999999999999987643
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=93.18 E-value=0.021 Score=51.27 Aligned_cols=27 Identities=22% Similarity=0.362 Sum_probs=19.5
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.+.-++++|||||+||||.+-=|+-.+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345579999999999998654444333
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.18 E-value=0.02 Score=51.41 Aligned_cols=38 Identities=24% Similarity=0.300 Sum_probs=26.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCC--CCceEEECCeec
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEP--ADGTIIIDGVDI 250 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~--~~G~I~i~g~~~ 250 (602)
-++-+.|.+||||||+.+.|..-+.. .--.+.+||..+
T Consensus 25 ~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 25 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 67999999999999999998754321 123455666433
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.17 E-value=0.021 Score=49.06 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.7
Q ss_pred eeEEEECCCCCChHHHHHHHHh
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g 514 (602)
-+|+|+|..|+|||||++.+.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHh
Confidence 3699999999999999999864
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.14 E-value=0.028 Score=51.41 Aligned_cols=29 Identities=24% Similarity=0.123 Sum_probs=23.0
Q ss_pred eeeEEecc-eeEEEECCCCCChHHHHHHHH
Q psy3001 485 VGLSVSYA-MQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 485 ~~l~i~~G-e~v~ivG~nGsGKSTLl~~L~ 513 (602)
.++++..+ ..+-|+|||.|||||++|.+.
T Consensus 33 Ndi~l~~~~~~~iiTGpN~~GKSt~lk~i~ 62 (234)
T d1wb9a2 33 NPLNLSPQRRMLIITGPNMGGKSTYMRQTA 62 (234)
T ss_dssp EEEEECSSSCEEEEECCTTSSHHHHHHHHH
T ss_pred eeEEECCCceEEEEeccCchhhHHHHHHHH
Confidence 45666554 457899999999999999874
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.14 E-value=0.019 Score=53.02 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=22.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.|.||+|+||||++++++..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 5689999999999999999998754
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=93.13 E-value=0.022 Score=54.84 Aligned_cols=24 Identities=42% Similarity=0.606 Sum_probs=21.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhcc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
-++||+|+.|||||||+..|...+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 369999999999999999998754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.13 E-value=0.021 Score=57.54 Aligned_cols=32 Identities=22% Similarity=0.459 Sum_probs=25.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g 527 (602)
-|-++||||||||.|++.|++++.. =-+..|+
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~da 82 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEG
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeec
Confidence 4789999999999999999997632 2344544
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.019 Score=49.21 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=18.3
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|++|+|||||++-+.+
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999987765
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=93.11 E-value=0.024 Score=50.19 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
|||+|+..+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999854
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.025 Score=48.69 Aligned_cols=23 Identities=30% Similarity=0.418 Sum_probs=20.3
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+++|..|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 48999999999999999998853
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.01 E-value=0.39 Score=44.32 Aligned_cols=35 Identities=34% Similarity=0.546 Sum_probs=27.1
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCce-EEECC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGT-IIIDG 247 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~-I~i~g 247 (602)
.++-+.|++|||||||+..++....-..|. +++|.
T Consensus 58 ~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDt 93 (268)
T d1xp8a1 58 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDA 93 (268)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred eEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEEC
Confidence 789999999999999998888776544454 34444
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.01 E-value=0.025 Score=51.04 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=26.5
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccCCCCceE
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIEPADGTI 523 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I 523 (602)
+|..|+|-|.-||||||++++|.-.++. .|.+
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~-~~~~ 33 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP-NCKL 33 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT-SEEE
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh-CCEE
Confidence 5788999999999999999999877753 4443
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=92.98 E-value=0.026 Score=50.43 Aligned_cols=25 Identities=32% Similarity=0.436 Sum_probs=19.8
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++++||+|+||||.+-=|+..+.
T Consensus 7 ~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 7 RVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 7899999999999998754555443
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.97 E-value=0.041 Score=47.71 Aligned_cols=22 Identities=32% Similarity=0.549 Sum_probs=19.6
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+++++|..|+|||||++.+.+-
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999987663
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=92.97 E-value=0.023 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-|.||+|+||||++++++..+
T Consensus 48 lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 48 LLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHH
Confidence 6799999999999999998764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.93 E-value=0.025 Score=52.94 Aligned_cols=20 Identities=30% Similarity=0.549 Sum_probs=18.4
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~ 513 (602)
.|||+|+.|||||||+..|+
T Consensus 8 ni~i~gh~~~GKTtL~e~ll 27 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERIL 27 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 48999999999999999994
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.90 E-value=0.024 Score=48.43 Aligned_cols=21 Identities=24% Similarity=0.431 Sum_probs=19.4
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.022 Score=48.76 Aligned_cols=20 Identities=30% Similarity=0.456 Sum_probs=17.7
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|++|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.85 E-value=0.027 Score=48.25 Aligned_cols=21 Identities=38% Similarity=0.645 Sum_probs=19.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+|+|..|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999875
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.024 Score=48.82 Aligned_cols=21 Identities=24% Similarity=0.561 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999876
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=92.84 E-value=0.022 Score=51.15 Aligned_cols=27 Identities=22% Similarity=0.295 Sum_probs=16.6
Q ss_pred cceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
...++++|||+|+||||.+-=|+..+.
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 37 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK 37 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345689999999999987655555554
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.83 E-value=0.029 Score=49.89 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+++.|.|++|||||||+.-++.-
T Consensus 24 ~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 24 SITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHHH
Confidence 89999999999999999776653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=92.76 E-value=0.027 Score=51.58 Aligned_cols=21 Identities=14% Similarity=0.191 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|||+|.-||||||.++.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999954
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.73 E-value=0.036 Score=50.18 Aligned_cols=28 Identities=29% Similarity=0.184 Sum_probs=21.9
Q ss_pred eeeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 485 VGLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 485 ~~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
.++.+.. +.+-|+|||.+||||++|.+.
T Consensus 29 Ndi~~~~-~~~iiTGpN~~GKSt~lk~i~ 56 (224)
T d1ewqa2 29 NDLEMAH-ELVLITGPNMAGKSTFLRQTA 56 (224)
T ss_dssp EEEEESS-CEEEEESCSSSSHHHHHHHHH
T ss_pred ceEEeCC-cEEEEECCCccccchhhhhhH
Confidence 3455543 468899999999999999764
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.72 E-value=0.029 Score=48.05 Aligned_cols=21 Identities=33% Similarity=0.450 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999988875
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.70 E-value=0.026 Score=51.37 Aligned_cols=22 Identities=36% Similarity=0.496 Sum_probs=20.1
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-+.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 6799999999999999999864
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.69 E-value=0.03 Score=47.79 Aligned_cols=21 Identities=24% Similarity=0.517 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998874
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.66 E-value=0.023 Score=49.17 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=18.1
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|+.|+|||||++-+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997655
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.66 E-value=0.023 Score=51.94 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.+.||.|+||||+++++++.+
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~ 59 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHEL 59 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999865
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.65 E-value=0.026 Score=48.89 Aligned_cols=22 Identities=41% Similarity=0.477 Sum_probs=18.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.-+.|+|+||+||||++-.+..
T Consensus 15 ~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 15 LGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 6699999999999999876553
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.63 E-value=0.035 Score=51.32 Aligned_cols=28 Identities=21% Similarity=0.452 Sum_probs=23.9
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
.+.|.||.|+||||+++.++..++...+
T Consensus 45 ~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 45 RATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred ceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 4789999999999999999998864444
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.63 E-value=0.027 Score=51.86 Aligned_cols=24 Identities=17% Similarity=0.267 Sum_probs=21.7
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+-+.||+|+||||++++++..+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999764
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.63 E-value=0.025 Score=48.47 Aligned_cols=21 Identities=38% Similarity=0.607 Sum_probs=18.7
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998764
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.62 E-value=0.029 Score=49.93 Aligned_cols=24 Identities=33% Similarity=0.423 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.|+|-|.-||||||+++.|...++
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999987653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=92.61 E-value=0.028 Score=51.41 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=20.9
Q ss_pred EEEECCCCCChHHHHHHHHhccC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+-+.||.|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 57999999999999999999764
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.61 E-value=0.026 Score=51.39 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=21.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++||+|...||||||++.|.+.
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhh
Confidence 56999999999999999999874
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=92.60 E-value=0.023 Score=54.43 Aligned_cols=24 Identities=25% Similarity=0.499 Sum_probs=21.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.++||+|||||+|+|+|+..+
T Consensus 50 ~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 50 KNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhhcc
Confidence 347899999999999999999875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.59 E-value=0.024 Score=49.48 Aligned_cols=20 Identities=40% Similarity=0.556 Sum_probs=18.0
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++-+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987664
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.58 E-value=0.027 Score=50.13 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.4
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998755
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=92.58 E-value=0.012 Score=52.81 Aligned_cols=21 Identities=43% Similarity=0.638 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
.|||+|+.++|||||+..|++
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 489999999999999999964
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=0.025 Score=51.44 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.5
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+.+.||+|+||||++++++..+
T Consensus 35 ~lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 35 HMLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCChHHHHHHHHHHH
Confidence 37899999999999999999854
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.53 E-value=0.026 Score=48.28 Aligned_cols=20 Identities=30% Similarity=0.627 Sum_probs=18.0
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++.+.+
T Consensus 5 i~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997665
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.53 E-value=0.032 Score=48.19 Aligned_cols=21 Identities=38% Similarity=0.490 Sum_probs=18.6
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987765
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.53 E-value=0.024 Score=49.41 Aligned_cols=21 Identities=33% Similarity=0.452 Sum_probs=18.8
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 488999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.52 E-value=0.028 Score=51.11 Aligned_cols=26 Identities=27% Similarity=0.282 Sum_probs=23.4
Q ss_pred EEecceeEEEECCCCCChHHHHHHHH
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
-+++|..+-|.|+.|||||||+.-++
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999998775
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=92.51 E-value=0.018 Score=50.32 Aligned_cols=21 Identities=33% Similarity=0.510 Sum_probs=19.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|+.|+|||||++.+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999999865
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.50 E-value=0.029 Score=48.67 Aligned_cols=22 Identities=41% Similarity=0.522 Sum_probs=18.9
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.-+.|.|+||+||||++..+..
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHH
Confidence 6699999999999999976653
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.47 E-value=0.034 Score=47.65 Aligned_cols=21 Identities=33% Similarity=0.488 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++.+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998865
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.45 E-value=0.028 Score=48.29 Aligned_cols=22 Identities=32% Similarity=0.415 Sum_probs=19.3
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
++++|.+|+|||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 7899999999999999987753
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=92.44 E-value=0.037 Score=47.91 Aligned_cols=25 Identities=40% Similarity=0.626 Sum_probs=21.0
Q ss_pred ecceeEEEECCCCCChHHHHHHHHh
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
-.|.-|.|+|++|+||||++..|..
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHH
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 3566799999999999999987764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.031 Score=50.07 Aligned_cols=25 Identities=32% Similarity=0.394 Sum_probs=19.3
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++++|||+|+||||.+-=|+..+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 6799999999999987744454443
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.41 E-value=0.042 Score=47.35 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=20.4
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|.++|..|+|||||++.+.+..
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 48899999999999999998753
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=92.40 E-value=0.036 Score=49.54 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=20.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
..++.++||||+||||.+-=|+..+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34689999999999987766665554
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.38 E-value=0.03 Score=48.29 Aligned_cols=21 Identities=29% Similarity=0.543 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++.+.+
T Consensus 7 KI~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998864
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.37 E-value=0.035 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.390 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|-|+-||||||+++.|...+
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 679999999999999999987754
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.031 Score=48.42 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|.|+|..|+|||||++.+.+-
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 5889999999999999888753
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.34 E-value=0.031 Score=48.12 Aligned_cols=20 Identities=25% Similarity=0.564 Sum_probs=18.4
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999998775
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.30 E-value=0.029 Score=48.98 Aligned_cols=20 Identities=20% Similarity=0.389 Sum_probs=18.2
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++|+|+.|+|||||++-+.+
T Consensus 8 i~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 88999999999999988765
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.28 E-value=0.032 Score=47.58 Aligned_cols=20 Identities=25% Similarity=0.428 Sum_probs=18.3
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++-+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998765
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.036 Score=48.01 Aligned_cols=21 Identities=43% Similarity=0.672 Sum_probs=19.4
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999876
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=92.18 E-value=0.041 Score=50.84 Aligned_cols=30 Identities=20% Similarity=0.382 Sum_probs=25.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCce
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGT 242 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~ 242 (602)
..+.|.||.|+||||+++.++..+....+.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~~~ 73 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKTTA 73 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhcccCC
Confidence 568999999999999999999988655443
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.18 E-value=0.03 Score=47.96 Aligned_cols=21 Identities=38% Similarity=0.604 Sum_probs=18.6
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999987765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=92.16 E-value=0.029 Score=51.76 Aligned_cols=23 Identities=22% Similarity=0.221 Sum_probs=20.6
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+.+.||.|||||++++.|+...
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhcc
Confidence 48899999999999999999753
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.16 E-value=0.03 Score=48.38 Aligned_cols=20 Identities=45% Similarity=0.585 Sum_probs=18.0
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|++|+|||||++-+.+
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 78999999999999997664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.15 E-value=0.038 Score=49.36 Aligned_cols=24 Identities=25% Similarity=0.410 Sum_probs=21.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.+++|-|+-||||||+++.|...+
T Consensus 3 kfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 3 KYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.029 Score=52.69 Aligned_cols=23 Identities=39% Similarity=0.270 Sum_probs=21.2
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|+|+|+.++|||||++.|+|..
T Consensus 34 vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 34 VVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58999999999999999999854
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.10 E-value=0.035 Score=47.90 Aligned_cols=21 Identities=38% Similarity=0.705 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++-+.+
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998765
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.08 E-value=0.038 Score=47.38 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=22.4
Q ss_pred eEEEECCCCCChHHHHHHHHhc-----cCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI-----IEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~-----~~~~~G 521 (602)
+|+++|..|+|||||++-+.+- ++|+-|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 5899999999999999977653 345556
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.045 Score=47.13 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred EEEEeccCCChhHHHHHHhcccC
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
++++|..|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 78999999999999999887543
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.04 E-value=0.024 Score=48.96 Aligned_cols=21 Identities=19% Similarity=0.512 Sum_probs=9.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=92.03 E-value=0.037 Score=51.71 Aligned_cols=27 Identities=15% Similarity=0.123 Sum_probs=24.1
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
-+.+|+.+.|.|++|+||||++.-++-
T Consensus 31 G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 31 GARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp SBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 378999999999999999999888764
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=92.02 E-value=0.036 Score=51.36 Aligned_cols=40 Identities=28% Similarity=0.299 Sum_probs=29.0
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhccCCCCceEEECCeec
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDI 530 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i 530 (602)
++....+-+.||.|+|||+++++|+..+... -+.+++.++
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~~~--~~~i~~~~l 81 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcCCC--EEEEEhHHh
Confidence 3344457899999999999999999977432 355665444
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.01 E-value=0.039 Score=48.05 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=19.1
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++.+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999988765
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.01 E-value=0.039 Score=47.76 Aligned_cols=24 Identities=38% Similarity=0.652 Sum_probs=21.0
Q ss_pred cceeEEEECCCCCChHHHHHHHHh
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
.|.-|.|.|++|+||||++..|..
T Consensus 14 ~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 14 FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 677799999999999999988763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.043 Score=50.15 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.3
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHh
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
-+.+|..+-|.|++||||||+...++-
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999999988864
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.93 E-value=0.041 Score=47.22 Aligned_cols=21 Identities=33% Similarity=0.637 Sum_probs=19.2
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999999884
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=91.89 E-value=0.037 Score=50.97 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.4
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.|-+.||.|+|||+++++|+....
T Consensus 42 ~vLL~GppGtGKT~la~alA~~~~ 65 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEESN 65 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECcCCCCHHHHHHHHhhccc
Confidence 478999999999999999998754
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.038 Score=48.70 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+|+|..|+|||||++-+.+
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 489999999999999998775
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.82 E-value=0.024 Score=48.87 Aligned_cols=21 Identities=24% Similarity=0.487 Sum_probs=18.3
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++.+..
T Consensus 5 Ki~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC-
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999997754
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.81 E-value=0.044 Score=49.26 Aligned_cols=25 Identities=24% Similarity=0.416 Sum_probs=22.6
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|-|.-||||||++++|.-.+.
T Consensus 4 k~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 4 KLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHH
Confidence 7899999999999999999987654
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.80 E-value=0.035 Score=47.31 Aligned_cols=20 Identities=25% Similarity=0.517 Sum_probs=17.9
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++-+..
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=91.79 E-value=0.043 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=22.2
Q ss_pred ceeEEEECCCCCChHHHHHHHHhcc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-++||||...+|||||+++|++--
T Consensus 10 ~~kiGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 10 NLKTGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHST
T ss_pred CcEEEEECCCCCCHHHHHHHHHCCC
Confidence 3469999999999999999999863
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=91.79 E-value=0.038 Score=50.51 Aligned_cols=22 Identities=18% Similarity=0.285 Sum_probs=19.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++||+|.-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3689999999999999999954
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.79 E-value=0.044 Score=47.05 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.7
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++++|..|+|||||++.+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.76 E-value=0.039 Score=51.06 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=20.5
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.++.|.|+.|+|||||++.++.-.
T Consensus 30 ~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 30 PITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCcHHHHHHHHHHHC
Confidence 679999999999999999776543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=91.70 E-value=0.037 Score=53.05 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=20.1
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+|||||..-+|||||+++|+|.
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 5899999999999999999986
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.70 E-value=0.046 Score=49.95 Aligned_cols=26 Identities=23% Similarity=0.391 Sum_probs=22.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHH
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
-+++|+.+-|.|++|||||||+.-++
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHHH
Confidence 37899999999999999999988654
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.69 E-value=0.044 Score=49.45 Aligned_cols=24 Identities=17% Similarity=0.426 Sum_probs=21.7
Q ss_pred EecceeEEEECCCCCChHHHHHHH
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLAL 512 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L 512 (602)
+++|+.+-|.|++|+|||||+.-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998644
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=91.66 E-value=0.047 Score=49.60 Aligned_cols=26 Identities=15% Similarity=0.183 Sum_probs=23.9
Q ss_pred EecceeEEEECCCCCChHHHHHHHHh
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
+++|+.+-|.|++|+||||++.-++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999988863
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.65 E-value=0.038 Score=52.40 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 38899999999999999999954
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.65 E-value=0.041 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.381 Sum_probs=18.5
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|.+|+|||||++-+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987665
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.63 E-value=0.047 Score=46.77 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=22.8
Q ss_pred eEEEECCCCCChHHHHHHHHh-----ccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR-----IIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g-----~~~~~~G 521 (602)
+|.++|..|+|||||++-+.+ .+.|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 589999999999999999875 4455545
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.62 E-value=0.038 Score=47.32 Aligned_cols=21 Identities=38% Similarity=0.588 Sum_probs=18.5
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++|+|.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999987764
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.61 E-value=0.04 Score=51.00 Aligned_cols=26 Identities=23% Similarity=0.179 Sum_probs=21.9
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+..+.|.|+.|+|||||++.++.-..
T Consensus 29 ~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 29 APITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 34688999999999999998886553
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.60 E-value=0.038 Score=47.23 Aligned_cols=20 Identities=35% Similarity=0.448 Sum_probs=18.0
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++|+|.+|+|||||++-+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999987664
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.57 E-value=0.043 Score=47.20 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=18.4
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.-+.|.|+||+||||++-.+..
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEeCCCCCHHHHHHHHHH
Confidence 6699999999999999865543
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.043 Score=46.95 Aligned_cols=20 Identities=35% Similarity=0.488 Sum_probs=17.9
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++|+|..|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 79999999999999997654
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=91.50 E-value=0.09 Score=48.73 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=30.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccC-CCCceEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~g~ 528 (602)
-+..|.++-|.|++|||||||+..++.... +..-.+++|..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE 91 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 91 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEccc
Confidence 467888999999999999999887766543 33334677764
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.49 E-value=0.042 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.352 Sum_probs=21.1
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.++|||.-.||||||+++|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.04 Score=51.66 Aligned_cols=32 Identities=22% Similarity=0.143 Sum_probs=28.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhccCC
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
+.+-+|++.+|.|+.|+|||||+..++.-...
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~~ 69 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIAY 69 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHhh
Confidence 56789999999999999999999999885543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.46 E-value=0.04 Score=47.52 Aligned_cols=20 Identities=40% Similarity=0.489 Sum_probs=17.6
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|++|+|||||++-+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 89999999999999976654
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.39 E-value=0.082 Score=49.09 Aligned_cols=41 Identities=22% Similarity=0.344 Sum_probs=30.9
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCce-EEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGT-IIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~-I~i~g~ 528 (602)
-+..|.++-|.|++|||||||+..++.......|. |+||.+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 46788899999999999999986666554444454 567764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.37 E-value=0.074 Score=45.54 Aligned_cols=20 Identities=45% Similarity=0.826 Sum_probs=17.9
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997664
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.37 E-value=0.044 Score=47.40 Aligned_cols=21 Identities=43% Similarity=0.615 Sum_probs=18.9
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=91.32 E-value=0.041 Score=47.38 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.3
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.++|++|+|||||++-+.+-
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~ 35 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLG 35 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3889999999999999988653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.28 E-value=0.049 Score=51.03 Aligned_cols=24 Identities=38% Similarity=0.278 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+|+|+|+.++|||||++.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 569999999999999999999854
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.27 E-value=0.054 Score=46.45 Aligned_cols=21 Identities=43% Similarity=0.811 Sum_probs=19.0
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++.+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998875
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=91.27 E-value=0.053 Score=46.61 Aligned_cols=26 Identities=38% Similarity=0.575 Sum_probs=21.3
Q ss_pred EecceeEEEECCCCCChHHHHHHHHh
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
.-.|.-|.|+|++|+||||++..|..
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34577799999999999999977653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.26 E-value=0.044 Score=47.16 Aligned_cols=20 Identities=30% Similarity=0.546 Sum_probs=18.1
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997654
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=91.25 E-value=0.054 Score=49.31 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=23.9
Q ss_pred EecceeEEEECCCCCChHHHHHHHHhc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
+.+|..+-|.|++|||||||+.-++--
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 678999999999999999999877654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.23 E-value=0.047 Score=51.72 Aligned_cols=24 Identities=29% Similarity=0.320 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+++||.-.||||||+++|+|.-
T Consensus 27 P~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHhCCC
Confidence 458999999999999999999964
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.22 E-value=0.044 Score=49.44 Aligned_cols=45 Identities=27% Similarity=0.320 Sum_probs=30.4
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
+.+++++||.- .+.......+...+........++++++..+.+.
T Consensus 101 ~~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i~ 145 (224)
T d1sxjb2 101 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNKII 145 (224)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred ceEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhhhh
Confidence 46799999974 4445555555556655555677888888877664
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=91.21 E-value=0.054 Score=48.21 Aligned_cols=23 Identities=35% Similarity=0.621 Sum_probs=20.9
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
.|||+|+-.+|||||+..|+|..
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~ 32 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIW 32 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhh
Confidence 48999999999999999999854
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.21 E-value=0.045 Score=47.15 Aligned_cols=21 Identities=38% Similarity=0.648 Sum_probs=18.4
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++|+|..|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.09 E-value=0.037 Score=47.63 Aligned_cols=20 Identities=25% Similarity=0.486 Sum_probs=17.3
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|.+|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999987654
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.046 Score=47.58 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=18.3
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.99 E-value=0.045 Score=51.03 Aligned_cols=28 Identities=25% Similarity=0.260 Sum_probs=23.3
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.+...+-+.||.|+|||+|++++++.+.
T Consensus 39 ~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 39 TPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 3344478999999999999999999764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.059 Score=46.00 Aligned_cols=21 Identities=33% Similarity=0.662 Sum_probs=18.9
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.97 E-value=0.049 Score=47.97 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=18.1
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++|+|+.|+|||||++-+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997664
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.052 Score=46.51 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.0
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++-+.+
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999986554
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=90.91 E-value=0.1 Score=48.36 Aligned_cols=41 Identities=27% Similarity=0.393 Sum_probs=31.5
Q ss_pred EEecceeEEEECCCCCChHHHHHHHHhccCCCCc-eEEECCe
Q psy3001 488 SVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADG-TIIIDGV 528 (602)
Q Consensus 488 ~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G-~I~i~g~ 528 (602)
-++.|.++-|.|+.|||||||+..++....-..| .++||.+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE 94 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 94 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECC
Confidence 3577889999999999999999888776543334 4677754
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=90.90 E-value=0.071 Score=48.04 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=23.8
Q ss_pred eEEEECCCCCChHHHHHHH-HhccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLAL-FRIIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L-~g~~~~~~G 521 (602)
+|.++|..|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 5899999999999999987 556667777
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.89 E-value=0.066 Score=48.48 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.5
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++.|.|++|||||||+.-++-
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHH
Confidence 8999999999999999976653
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=90.84 E-value=0.037 Score=47.71 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.2
Q ss_pred eEEEECCCCCChHHHHHHHHhcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+|.++|+.|+|||||++.+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999997543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=90.83 E-value=0.052 Score=51.61 Aligned_cols=24 Identities=25% Similarity=0.271 Sum_probs=21.7
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
..+++||.-.||||||+++|.|.-
T Consensus 25 P~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999965
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.82 E-value=0.059 Score=50.54 Aligned_cols=23 Identities=43% Similarity=0.587 Sum_probs=21.1
Q ss_pred eeEEEECCCCCChHHHHHHHHhc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
-++||||..-+|||||+++|++-
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHT
T ss_pred ceEEEECCCCCCHHHHHHHHHCC
Confidence 36999999999999999999965
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=90.81 E-value=0.055 Score=52.85 Aligned_cols=30 Identities=27% Similarity=0.444 Sum_probs=24.2
Q ss_pred EEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
+-++||||+|||.|.|.|+.+.+ .--|++|
T Consensus 71 iLfiGPTGvGKTElAk~LA~~~~--~~~ir~D 100 (364)
T d1um8a_ 71 ILLIGPTGSGKTLMAQTLAKHLD--IPIAISD 100 (364)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred eeeeCCCCccHHHHHHHHHhhcc--cceeehh
Confidence 67999999999999999999863 3345555
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=90.80 E-value=0.058 Score=49.64 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=21.1
Q ss_pred EEEECCCCCChHHHHHHHHhccC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+-+.||.|+|||+|+++|++...
T Consensus 45 iLl~GppGtGKT~la~aia~~~~ 67 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEAR 67 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEecCCCCChhHHHHHHHHHcC
Confidence 78999999999999999998764
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.79 E-value=0.088 Score=45.72 Aligned_cols=29 Identities=24% Similarity=0.369 Sum_probs=25.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCce
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGT 522 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~ 522 (602)
++.++|..|+|||||++-+..-.-|+.|.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~ 32 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGI 32 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccE
Confidence 58999999999999999987766677784
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=90.72 E-value=0.067 Score=49.71 Aligned_cols=51 Identities=27% Similarity=0.387 Sum_probs=34.9
Q ss_pred eEEEEeccCCChhHHHHHHh---cccCCCCceEEECCeecCCCChHHHhhccceec
Q psy3001 214 LVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIP 266 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~v~ 266 (602)
-++|+|..|||||||+..|. |.. ...|++. +|..+.+..+.+..+.+.+-.
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~-~~~g~v~-~g~~~~D~~~~E~~r~~ti~~ 57 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK-ERRGRVE-EGTTTTDYTPEAKLHRTTVRT 57 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS-SSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc-hhhccch-hccccccchHHHHHhCCeEEe
Confidence 38999999999999999884 433 2334442 455566667777777665443
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.71 E-value=0.052 Score=46.52 Aligned_cols=20 Identities=35% Similarity=0.644 Sum_probs=18.1
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++-+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999987764
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.71 E-value=0.047 Score=54.80 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.1
Q ss_pred eEEEEeccCCChhHHHHHHhcccC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
-+.++||+|||||-|++.|++++.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999874
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.69 E-value=0.063 Score=48.83 Aligned_cols=25 Identities=24% Similarity=0.325 Sum_probs=22.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.+++|=|.-||||||+++.|.-.+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 6799999999999999999987653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.68 E-value=0.035 Score=47.85 Aligned_cols=20 Identities=20% Similarity=0.512 Sum_probs=8.6
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|..|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999986654
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.64 E-value=0.05 Score=49.07 Aligned_cols=22 Identities=41% Similarity=0.513 Sum_probs=19.8
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-+.||.|+||||++++++..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 5699999999999999999863
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=90.62 E-value=0.062 Score=47.31 Aligned_cols=22 Identities=41% Similarity=0.664 Sum_probs=20.3
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+|++|.-.+|||||++.|.|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998854
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=90.58 E-value=0.058 Score=51.73 Aligned_cols=24 Identities=42% Similarity=0.483 Sum_probs=21.1
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-++||.|+-|||||||+..+...+
T Consensus 52 ~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 52 IRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEeeeCCCCCCHHHHHHHHHHHH
Confidence 569999999999999999887643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.56 E-value=0.059 Score=46.14 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.3
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++-+..
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987653
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.54 E-value=0.062 Score=46.82 Aligned_cols=21 Identities=24% Similarity=0.422 Sum_probs=18.8
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.|+|..|+|||||++.+..
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhh
Confidence 589999999999999988764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.50 E-value=0.056 Score=48.72 Aligned_cols=45 Identities=20% Similarity=0.278 Sum_probs=31.9
Q ss_pred CCCeEEEecccccCChhHHHHHHHHHHHhccccEEEEeeecccccc
Q psy3001 367 KTKILILDEATAAIDLETDDLIQSTIRSEFAHCTVLTIAHRLNTII 412 (602)
Q Consensus 367 ~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~i~ 412 (602)
+.+++++||. ..+.......+...+.......-++++++....+.
T Consensus 99 ~~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i~ 143 (227)
T d1sxjc2 99 GFKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLT 143 (227)
T ss_dssp SCEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGSC
T ss_pred CeEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHHhH
Confidence 3569999997 45667777777777776655666777777766554
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=90.45 E-value=0.081 Score=44.73 Aligned_cols=25 Identities=36% Similarity=0.490 Sum_probs=22.5
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++++.|+=||||||++|.++.-+-
T Consensus 34 ~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 34 IMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEEecCCCccHHHHHHHHHhhcc
Confidence 7899999999999999999887653
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.43 E-value=0.057 Score=46.20 Aligned_cols=21 Identities=38% Similarity=0.714 Sum_probs=18.6
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++-+.+
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999987765
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.33 E-value=0.066 Score=46.43 Aligned_cols=21 Identities=24% Similarity=0.490 Sum_probs=18.4
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|.++|..|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986654
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.31 E-value=0.063 Score=51.33 Aligned_cols=31 Identities=26% Similarity=0.373 Sum_probs=25.3
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
.+.++||+|+|||.|++.|+..+. .--|++|
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d 84 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG--IELLRFD 84 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT--CEEEEEE
T ss_pred EEEEECCCcchhHHHHHHHHhhcc--CCeeEec
Confidence 478999999999999999999874 2345565
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.30 E-value=0.066 Score=48.19 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHHhccC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+-+.||.|+||||++++++..+.
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l~ 61 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHELL 61 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHHh
Confidence 56999999999999999987543
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.25 E-value=0.086 Score=45.79 Aligned_cols=30 Identities=23% Similarity=0.351 Sum_probs=25.2
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
.+.++|..|+|||||++-+..-..|+.|..
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 389999999999999998877777777744
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.20 E-value=0.056 Score=49.45 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-|.||.|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 36 LLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6799999999999999998754
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=90.13 E-value=0.048 Score=52.57 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=23.3
Q ss_pred eEEEEeccCCChhHHHHHHhcccCC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEP 238 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~ 238 (602)
-+.|+|+.|+|||||++.+.++++|
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 3789999999999999999999986
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.06 E-value=0.071 Score=46.69 Aligned_cols=21 Identities=24% Similarity=0.415 Sum_probs=18.6
Q ss_pred eEEEECCCCCChHHHHHHHHh
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g 514 (602)
+|+++|..|+|||||++.+.+
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987754
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.01 E-value=0.065 Score=45.87 Aligned_cols=20 Identities=35% Similarity=0.572 Sum_probs=17.6
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++++|+.|+|||||++-+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999986543
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=89.98 E-value=0.051 Score=52.38 Aligned_cols=25 Identities=32% Similarity=0.437 Sum_probs=22.9
Q ss_pred eEEEECCCCCChHHHHHHHHhccCC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEP 518 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~ 518 (602)
-+-++|+.|+|||||++.+.+++++
T Consensus 30 ~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 30 GVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCCC
Confidence 3789999999999999999999865
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=89.93 E-value=0.077 Score=47.77 Aligned_cols=29 Identities=17% Similarity=0.293 Sum_probs=23.2
Q ss_pred ceEEEEeccCCChhHHHHHH-hcccCCCCc
Q psy3001 213 ELVGIVGRTGAGKSSLTLAL-FRIIEPADG 241 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll-~g~~~~~~G 241 (602)
-.+.++|.+|+|||||++-+ .+-..|+-|
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 35899999999999999765 455567776
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=89.88 E-value=0.078 Score=46.82 Aligned_cols=22 Identities=41% Similarity=0.720 Sum_probs=20.1
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.|||+|+-.+|||||+..|.+.
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.074 Score=46.31 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.7
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
++|+|.+|+|||||++-+..
T Consensus 12 i~lvG~~~vGKTsLi~r~~~ 31 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAN 31 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhh
Confidence 89999999999999977553
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.069 Score=45.54 Aligned_cols=20 Identities=35% Similarity=0.670 Sum_probs=17.8
Q ss_pred EEEEeccCCChhHHHHHHhc
Q psy3001 215 VGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g 234 (602)
+++||.+|+|||||++-+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 78999999999999987654
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.73 E-value=0.082 Score=45.77 Aligned_cols=21 Identities=24% Similarity=0.433 Sum_probs=17.5
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 378999999999999975543
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.69 E-value=0.082 Score=46.32 Aligned_cols=28 Identities=21% Similarity=0.367 Sum_probs=22.9
Q ss_pred eEEEECCCCCChHHHHHHHHh--ccCCCCc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFR--IIEPADG 521 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g--~~~~~~G 521 (602)
++.++|..|+|||||++-+.- -+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 689999999999999998832 3457777
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.68 E-value=0.078 Score=46.44 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=22.1
Q ss_pred eEEEEeccCCChhHHHHHHhc--ccCCCCc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR--IIEPADG 241 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g--~~~~~~G 241 (602)
.+.++|.+|+|||||++-+.- -+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 478999999999999998732 2347777
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.60 E-value=0.073 Score=45.99 Aligned_cols=21 Identities=33% Similarity=0.588 Sum_probs=18.4
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|..|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 389999999999999996655
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.47 E-value=0.099 Score=47.58 Aligned_cols=21 Identities=29% Similarity=0.544 Sum_probs=18.5
Q ss_pred ceEEEEeccCCChhHHHHHHh
Q psy3001 213 ELVGIVGRTGAGKSSLTLALF 233 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~ 233 (602)
+++.|.|++|||||||.--++
T Consensus 37 ~~~li~G~pGsGKT~~~lq~~ 57 (254)
T d1pzna2 37 AITEVFGEFGSGKTQLAHTLA 57 (254)
T ss_dssp EEEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHH
Confidence 899999999999999986443
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=89.46 E-value=0.12 Score=48.04 Aligned_cols=41 Identities=22% Similarity=0.435 Sum_probs=31.1
Q ss_pred eEEecceeEEEECCCCCChHHHHHHHHhc-cCCCCceEEECC
Q psy3001 487 LSVSYAMQVGIVGRTGAGKSSLTLALFRI-IEPADGTIIIDG 527 (602)
Q Consensus 487 l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~-~~~~~G~I~i~g 527 (602)
+.+-+|++++|.|..|+|||||+.-++.- .+.+.+.+.+-+
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~~~~~~~~v~V~~~ 104 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINNVAKAHGGYSVFAG 104 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHHHTTTCSSEEEEEE
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHHHHhhCCCeEEEEE
Confidence 67889999999999999999998877654 444445444443
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.40 E-value=0.081 Score=48.93 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=21.0
Q ss_pred EEEECCCCCChHHHHHHHHhccC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+-+.||.|+|||+++++++....
T Consensus 41 iLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 41 ILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEecCCCCCchHHHHHHHHHhC
Confidence 78999999999999999999653
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.17 E-value=0.095 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.385 Sum_probs=21.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
.++|-|.-||||||+++.|.-.++
T Consensus 4 ~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 4 RLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999997664
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.96 E-value=0.089 Score=46.00 Aligned_cols=21 Identities=24% Similarity=0.358 Sum_probs=17.7
Q ss_pred eEEEEeccCCChhHHHHHHhc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g 234 (602)
.++++|.+|+|||||++-+..
T Consensus 5 KvvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 389999999999999966543
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=88.94 E-value=0.089 Score=50.25 Aligned_cols=21 Identities=33% Similarity=0.591 Sum_probs=19.5
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+||||..-+|||||+++|+|-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC-
T ss_pred EeEECCCCCCHHHHHHHHHCC
Confidence 899999999999999999985
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=88.80 E-value=0.06 Score=49.92 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.5
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+.|+||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5677999999999999999865
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.61 E-value=0.12 Score=46.56 Aligned_cols=22 Identities=18% Similarity=0.291 Sum_probs=19.6
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++.|.|++|+||||++.-++-
T Consensus 35 ~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 35 SVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 8999999999999999876654
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.37 E-value=0.11 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.344 Sum_probs=19.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
+++.|.|++||||||+..-++.
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 8999999999999999977764
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.13 E-value=0.1 Score=49.29 Aligned_cols=23 Identities=35% Similarity=0.430 Sum_probs=21.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
-.+||||..-||||||+++|++-
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHCC
Confidence 34999999999999999999975
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.89 E-value=0.11 Score=46.11 Aligned_cols=21 Identities=43% Similarity=0.676 Sum_probs=18.9
Q ss_pred EEEEeccCCChhHHHHHHhcc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~ 235 (602)
+|++|..++|||||+..|.+.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 899999999999999998643
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=87.81 E-value=0.14 Score=46.08 Aligned_cols=20 Identities=30% Similarity=0.340 Sum_probs=18.5
Q ss_pred EEEECCCCCChHHHHHHHHh
Q psy3001 495 VGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g 514 (602)
++++|+..+|||||+..|+.
T Consensus 12 i~viGHVd~GKSTL~~~Ll~ 31 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLLH 31 (222)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHH
Confidence 79999999999999999953
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=87.67 E-value=0.14 Score=47.56 Aligned_cols=41 Identities=12% Similarity=0.098 Sum_probs=31.2
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHHhccCCCCceEEEC
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALFRIIEPADGTIIID 526 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~ 526 (602)
=+.+-+|++++|.|+.|+|||+|+..+..-...+...+.+-
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~~ 101 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVYV 101 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeeee
Confidence 36788999999999999999999987655554444444443
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.51 E-value=0.11 Score=51.70 Aligned_cols=34 Identities=29% Similarity=0.389 Sum_probs=24.6
Q ss_pred ceEEEEeccCCChhHHHH-HHhcccCCCCceEEEC
Q psy3001 213 ELVGIVGRTGAGKSSLTL-ALFRIIEPADGTIIID 246 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~-ll~g~~~~~~G~I~i~ 246 (602)
..+.|+|++|||||++++ ++...+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 558999999999999986 4545554444555555
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=87.49 E-value=0.14 Score=47.27 Aligned_cols=25 Identities=36% Similarity=0.349 Sum_probs=21.6
Q ss_pred ecceeEEEECCCCCChHHHHHHHHh
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFR 514 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g 514 (602)
-+|+.+.|+|+.|+|||||+..|+-
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~ 51 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAA 51 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 4689999999999999999977653
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=0.12 Score=51.41 Aligned_cols=34 Identities=29% Similarity=0.412 Sum_probs=24.9
Q ss_pred eEEEECCCCCChHHHHHH-HHhccCCCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLA-LFRIIEPADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~-L~g~~~~~~G~I~i~g 527 (602)
.+.|+|.+|||||++++. +...+....+-|.+|.
T Consensus 52 H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD~ 86 (433)
T d1e9ra_ 52 HLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDP 86 (433)
T ss_dssp CEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred eEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 379999999999999864 4555554455566663
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.21 E-value=0.18 Score=40.22 Aligned_cols=42 Identities=10% Similarity=0.138 Sum_probs=29.7
Q ss_pred cceeEEEECCCCCChHHHHHHH-HhccCCCCc-eEE-ECCeecCC
Q psy3001 491 YAMQVGIVGRTGAGKSSLTLAL-FRIIEPADG-TII-IDGVDIRT 532 (602)
Q Consensus 491 ~Ge~v~ivG~nGsGKSTLl~~L-~g~~~~~~G-~I~-i~g~~i~~ 532 (602)
+|=.+.+.|.+|||||||.++| ..+++-..| .|+ +||.++++
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q~~G~R~vtll~~~ni~r 49 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNNKTE 49 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTTCHH
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHHhcCCcceEEecCCCHHH
Confidence 4567899999999999999999 455543333 354 56765543
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=87.07 E-value=0.15 Score=45.03 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.8
Q ss_pred EEEEeccCCChhHHHHHHhcccC
Q psy3001 215 VGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
+||+|.-.+|||||++.|.|...
T Consensus 11 i~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 11 IGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEccCCcHHHHHHHHHhhhc
Confidence 89999999999999999998554
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=87.01 E-value=0.13 Score=49.95 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=24.8
Q ss_pred ecceeEEEECCCCCChHHHHHHHHhccC
Q psy3001 490 SYAMQVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 490 ~~Ge~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+++..+.+.||.|+||||++++|++++.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4556789999999999999999999975
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.79 E-value=0.23 Score=46.26 Aligned_cols=22 Identities=45% Similarity=0.536 Sum_probs=20.2
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+||||-.-+|||||+++|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999964
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=86.70 E-value=0.25 Score=47.22 Aligned_cols=32 Identities=19% Similarity=0.213 Sum_probs=25.8
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
+|.|=|.-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57899999999999999999988654443333
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=86.69 E-value=0.096 Score=48.43 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=19.2
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+.+.||.|+||||+++.++..+
T Consensus 49 l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 49 YGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EECTTCCSSSHHHHHHHHHHHH
T ss_pred EEeECCCCCCHHHHHHHHHHHH
Confidence 5567999999999999998865
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=86.63 E-value=0.14 Score=46.07 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=19.5
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
++.|.|.=|||||||++-++.-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 4679999999999999999875
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=86.52 E-value=0.15 Score=45.86 Aligned_cols=20 Identities=30% Similarity=0.488 Sum_probs=18.2
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~ 513 (602)
.||++|+.++|||||+..|+
T Consensus 5 Ni~viGHVd~GKTTL~~~Ll 24 (224)
T d1jnya3 5 NLIVIGHVDHGKSTLVGRLL 24 (224)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHH
Confidence 38999999999999999884
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=86.42 E-value=0.17 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=20.3
Q ss_pred eeEEEECCCCCChHHHHHHHHhc
Q psy3001 493 MQVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 493 e~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
.+|+|+|.-|.|||||++.++.-
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 36899999999999999998754
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=86.39 E-value=0.19 Score=47.62 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=27.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIR 531 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~ 531 (602)
.+-++||.|+|||.|+++|++......--+.++|-++-
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~~~~~ 162 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPL 162 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEBSCSS
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEhhHhh
Confidence 35568999999999999999986422234667765553
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.18 E-value=0.17 Score=43.88 Aligned_cols=22 Identities=23% Similarity=0.348 Sum_probs=19.4
Q ss_pred eEEEECCCCCChHHHHHHHHhc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRI 515 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~ 515 (602)
++.++|..|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999998653
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=86.01 E-value=0.17 Score=46.96 Aligned_cols=49 Identities=22% Similarity=0.295 Sum_probs=22.2
Q ss_pred eEEEEeccCCChhHHHHHHh---cccCCCCceEEECCeecCCCChHHHhhccce
Q psy3001 214 LVGIVGRTGAGKSSLTLALF---RIIEPADGTIIIDGVDIRTLGLHTLRSRLTI 264 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~---g~~~~~~G~I~i~g~~~~~~~~~~~~~~i~~ 264 (602)
-+||+|..|||||||+-.|. |.... .|++. +|..+.+..+.+..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~-~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK-IGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC---------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc-cccee-cCceEEeccHHHHhcCCcc
Confidence 38999999999999998884 33332 23332 2333344445555555443
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=85.86 E-value=0.11 Score=42.32 Aligned_cols=28 Identities=18% Similarity=0.125 Sum_probs=20.4
Q ss_pred EecceeEEEECCCCCChHHHH-HHHHhcc
Q psy3001 489 VSYAMQVGIVGRTGAGKSSLT-LALFRII 516 (602)
Q Consensus 489 i~~Ge~v~ivG~nGsGKSTLl-~~L~g~~ 516 (602)
+++|+.+-|++++|||||+.+ .++....
T Consensus 4 l~~~~~~il~~~tGsGKT~~~~~~~~~~~ 32 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRFLPQILAEC 32 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTHHHHHHHHH
T ss_pred HHcCCcEEEEcCCCCChhHHHHHHHHHHh
Confidence 357888999999999999554 3444443
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=0.19 Score=47.79 Aligned_cols=25 Identities=28% Similarity=0.418 Sum_probs=22.0
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
..+.++||+|+|||.|++.|+..+.
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc
Confidence 4578999999999999999998753
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=85.43 E-value=0.28 Score=45.29 Aligned_cols=53 Identities=13% Similarity=0.247 Sum_probs=36.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEECCeecCCCChhhhhccceEecCCcc
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDGVDIRTLGLHTLRSRLTIIPQDPV 550 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i~g~~i~~~~~~~lr~~i~~V~Qdp~ 550 (602)
.+.+.||.++||||++.+|..++ ++.|.+ ++. -+..+.+.+..+-..+.+||.
T Consensus 106 ~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~--~~~-~~~f~l~~l~~k~~~~~~e~~ 158 (267)
T d1u0ja_ 106 TIWLFGPATTGKTNIAEAIAHTV-PFYGCV--NWT-NENFPFNDCVDKMVIWWEEGK 158 (267)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS-SCEEEC--CTT-CSSCTTGGGSSCSEEEECSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh-cchhhc--ccc-CCCccccccCCCEEEEEeCCC
Confidence 47899999999999999999998 555543 221 133445666665555556664
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=85.30 E-value=0.19 Score=43.64 Aligned_cols=22 Identities=23% Similarity=0.294 Sum_probs=18.9
Q ss_pred eEEEEeccCCChhHHHHHHhcc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.+.++|..|+|||||++-+..-
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~ 25 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRII 25 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999887553
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=84.66 E-value=0.26 Score=46.98 Aligned_cols=32 Identities=16% Similarity=0.317 Sum_probs=25.6
Q ss_pred eEEEECCCCCChHHHHHHHHhccCCCCceEEE
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIEPADGTIII 525 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~~~~G~I~i 525 (602)
+|.|=|.-||||||+++.|...+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 58999999999999999999887654334444
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=84.57 E-value=0.36 Score=46.06 Aligned_cols=32 Identities=19% Similarity=0.175 Sum_probs=25.6
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEE
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIII 245 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i 245 (602)
.|.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 47888999999999999999987665544443
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.52 E-value=0.21 Score=47.52 Aligned_cols=34 Identities=29% Similarity=0.365 Sum_probs=25.1
Q ss_pred eEEEECCCCCChHHHHHHHHhccC-CCCceEEECC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE-PADGTIIIDG 527 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~-~~~G~I~i~g 527 (602)
.+.++||+|+|||.+++.|+..+- ....-+.+|.
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred EEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 467999999999999999998752 1223355653
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=84.50 E-value=0.2 Score=48.53 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=23.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcccC
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIE 237 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~ 237 (602)
.++.+.||.|+||||+.+.|++.+.
T Consensus 155 ~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 155 RYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC
Confidence 6799999999999999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=84.22 E-value=0.3 Score=45.25 Aligned_cols=30 Identities=30% Similarity=0.341 Sum_probs=23.3
Q ss_pred ceeEEEECCCCCChHHHHHHHHhccCCCCc
Q psy3001 492 AMQVGIVGRTGAGKSSLTLALFRIIEPADG 521 (602)
Q Consensus 492 Ge~v~ivG~nGsGKSTLl~~L~g~~~~~~G 521 (602)
+-+++|+|..-+|||||++.|.|.-....|
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~~~ 141 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAKTG 141 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEEecCccchhhhhhhhhccceEEEC
Confidence 346999999999999999999997544333
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=84.11 E-value=0.22 Score=47.22 Aligned_cols=34 Identities=24% Similarity=0.266 Sum_probs=24.1
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceEEECC
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTIIIDG 247 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I~i~g 247 (602)
.+.++||.|+|||.|.+.|++.......-+.++|
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~~~~~ 158 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATVRF 158 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHTTSCCEEEEB
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCCCeEEEEh
Confidence 3555799999999999999997532222344544
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=83.98 E-value=0.24 Score=44.38 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred ceEEEEeccCCChhHHHHHHhcc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRI 235 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~ 235 (602)
.++.|.|-=|||||||++-+..-
T Consensus 4 Pv~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 4 AVTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHS
T ss_pred CEEEEeeCCCCCHHHHHHHHHhc
Confidence 57899999999999999888764
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.77 E-value=0.67 Score=42.57 Aligned_cols=24 Identities=29% Similarity=0.407 Sum_probs=21.0
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
-+.+||+.|+|||+++.-++..+.
T Consensus 41 n~lLVG~~GvGKTalv~~la~ri~ 64 (268)
T d1r6bx2 41 NPLLVGESGVGKTAIAEGLAWRIV 64 (268)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEECCCCCcHHHHHHHHHHHHH
Confidence 368999999999999999998653
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=83.60 E-value=0.27 Score=43.73 Aligned_cols=22 Identities=32% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-|.|++|+|||-|+++++-..
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5799999999999999998654
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.53 E-value=0.24 Score=44.86 Aligned_cols=23 Identities=26% Similarity=0.356 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHHhccC
Q psy3001 495 VGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+-|.||+|+||||++++++..+.
T Consensus 37 ~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 37 YLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 56899999999999999987653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=83.43 E-value=0.27 Score=45.73 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=19.8
Q ss_pred ceEEEEeccCCChhHHHHHHhc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFR 234 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g 234 (602)
.+++|+|.-|.|||||++.+..
T Consensus 45 ~~v~I~GmgGiGKTtLA~~v~~ 66 (277)
T d2a5yb3 45 FFLFLHGRAGSGKSVIASQALS 66 (277)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5799999999999999998765
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=83.39 E-value=0.32 Score=43.00 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEECCCCCChHHHHHHHHhcc
Q psy3001 495 VGIVGRTGAGKSSLTLALFRII 516 (602)
Q Consensus 495 v~ivG~nGsGKSTLl~~L~g~~ 516 (602)
+-+.||.|+||||+++.++..+
T Consensus 27 lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 27 LLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHhc
Confidence 6799999999999999998855
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.20 E-value=0.27 Score=45.43 Aligned_cols=36 Identities=25% Similarity=0.429 Sum_probs=27.7
Q ss_pred ceEEEEeccCCChhHHHHHHhcccCCCCceE-EECCe
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRIIEPADGTI-IIDGV 248 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I-~i~g~ 248 (602)
.++-+.|++|||||||+-.++....-..|.+ ++|..
T Consensus 61 ~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE 97 (269)
T d1mo6a1 61 RVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (269)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred eeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECC
Confidence 8899999999999999877776665555654 44543
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=83.17 E-value=0.27 Score=39.98 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=15.8
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~ 513 (602)
..-|++|+|||||+++-.++
T Consensus 10 ~~ll~apTGsGKT~~~~~~~ 29 (136)
T d1a1va1 10 VAHLHAPTGSGKSTKVPAAY 29 (136)
T ss_dssp EEEEECCTTSCTTTHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 45679999999999875544
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=83.01 E-value=0.25 Score=47.95 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.9
Q ss_pred eEEEEeccCCChhHHHHHHhccc
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
-+.++||+|+|||-|.|.|+.+.
T Consensus 70 niLfiGPTGvGKTElAk~LA~~~ 92 (364)
T d1um8a_ 70 NILLIGPTGSGKTLMAQTLAKHL 92 (364)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceeeeCCCCccHHHHHHHHHhhc
Confidence 37899999999999999999875
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=83.01 E-value=0.26 Score=43.22 Aligned_cols=22 Identities=41% Similarity=0.752 Sum_probs=19.9
Q ss_pred EEEEeccCCChhHHHHHHhccc
Q psy3001 215 VGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 215 ~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+|++|.-.+|||||++.|.+..
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHHH
Confidence 8999999999999999998754
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=82.40 E-value=0.38 Score=45.79 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=24.1
Q ss_pred eEEEEeccCCChhHHHHHHhcccCCCCceE
Q psy3001 214 LVGIVGRTGAGKSSLTLALFRIIEPADGTI 243 (602)
Q Consensus 214 ~~~lvG~sGsGKSTL~~ll~g~~~~~~G~I 243 (602)
.|.|=|.=||||||+++.|...+......+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v 36 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRI 36 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCce
Confidence 478889999999999999998776543333
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=82.09 E-value=17 Score=32.38 Aligned_cols=44 Identities=23% Similarity=0.427 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHhhcccchhhhhcchhHHHHHHHHHHhhhhhHH
Q psy3001 90 AAKRLHEKLLKSMLRWSPLFFDTTPVGRVLSRFSSDVNTLDNKL 133 (602)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~r~~~~~~~~~~~~ 133 (602)
+...++.+.+++..+.+..++++...|+..++..+|.+.+...+
T Consensus 87 ~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~~~~~d~~~~~~~~ 130 (319)
T d3b60a2 87 VVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSS 130 (319)
T ss_dssp HHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHhhcccchhhcccccccccccccccccccccccc
Confidence 44567778888888888889999999999999999877655433
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=82.02 E-value=0.64 Score=38.88 Aligned_cols=56 Identities=23% Similarity=0.281 Sum_probs=44.1
Q ss_pred CCCeEEEecccccCC--hhHHHHHHHHHHHhccccEEEEeeeccc-cccc-CCeEEEEeC
Q psy3001 367 KTKILILDEATAAID--LETDDLIQSTIRSEFAHCTVLTIAHRLN-TIID-SDRVLVLDK 422 (602)
Q Consensus 367 ~p~iliLDEpts~LD--~~~~~~i~~~l~~~~~~~tvi~itH~l~-~i~~-~d~i~~l~~ 422 (602)
+.+++||||-..+++ --+++.+.+.|+....+.-+|+.-++.. .+.. ||.|..|+.
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 478999999998885 4578888999988777788888888754 3444 999988763
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.83 E-value=0.33 Score=44.01 Aligned_cols=20 Identities=35% Similarity=0.499 Sum_probs=18.2
Q ss_pred eEEEECCCCCChHHHHHHHH
Q psy3001 494 QVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~ 513 (602)
.++|+|+.++|||||+..|+
T Consensus 8 Ni~iiGHvD~GKsTl~~~ll 27 (239)
T d1f60a3 8 NVVVIGHVDSGKSTTTGHLI 27 (239)
T ss_dssp EEEEEECTTSCHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHH
Confidence 37999999999999998885
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=81.59 E-value=0.31 Score=46.38 Aligned_cols=24 Identities=33% Similarity=0.369 Sum_probs=19.8
Q ss_pred eEEEECCCCCChHHHHHHHHhccC
Q psy3001 494 QVGIVGRTGAGKSSLTLALFRIIE 517 (602)
Q Consensus 494 ~v~ivG~nGsGKSTLl~~L~g~~~ 517 (602)
+|.|=|.-||||||+++.|...++
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 589999999999999999987764
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=81.39 E-value=0.29 Score=45.53 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=24.6
Q ss_pred eeEEecceeEEEECCCCCChHHHHHHHH
Q psy3001 486 GLSVSYAMQVGIVGRTGAGKSSLTLALF 513 (602)
Q Consensus 486 ~l~i~~Ge~v~ivG~nGsGKSTLl~~L~ 513 (602)
=+.+-+|++++|.|+.|+|||+|+.-+.
T Consensus 62 l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 62 LVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred ccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 3678899999999999999999987665
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=81.34 E-value=0.38 Score=44.66 Aligned_cols=24 Identities=29% Similarity=0.212 Sum_probs=21.8
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
+..+|+|++|+|||||+..|+...
T Consensus 44 Qr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 44 QRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CeeeEeCCCCCCHHHHHHHHHHHH
Confidence 889999999999999999888754
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.24 E-value=0.34 Score=44.62 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=20.4
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.|||++|+|||+++.-++..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH
Confidence 347899999999999999888754
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=81.22 E-value=0.37 Score=42.02 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=20.3
Q ss_pred ceEEEEeccCCChhHHHHHHhccc
Q psy3001 213 ELVGIVGRTGAGKSSLTLALFRII 236 (602)
Q Consensus 213 e~~~lvG~sGsGKSTL~~ll~g~~ 236 (602)
.-+.|||+.|.|||+++.-++.-+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 347899999999999999888643
|