Psyllid ID: psy3051

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-
Protein Sequence
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVGT
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHccccccccccccHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHcccccccccccHHHHHHHHHHHcccccccccccccEEEccccccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MNSEEFREFGKAAIDFIADYHDtvrqrqvlpsvqpgylaslvpgempeegeDWRHIMRDMNtvimpgithwqsphfhafypsassfpSILGELLSTGlgvlsftwsphvgt
Flexible Loop (DISEMBL)
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSftwsphvgt
Low Complexity Region (SEG)
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVGT
Disordered region (IsUnstruct)
********FGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG*****GEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS*****
Disordered Region (DISOPRED)
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLAS**********EDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPH***
Disordered Region (DISEMBL)
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVGT
Disordered Region (DISPRO)
*NSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVGT
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	111	2.2.26 [Sep-21-2011]
P18486	510	Alpha-methyldopa hypersen	yes	N/A	0.945	0.205	0.590	1e-36
P05031	510	Aromatic-L-amino-acid dec	no	N/A	0.945	0.205	0.485	2e-31
O96567	510	Aromatic-L-amino-acid dec	N/A	N/A	0.945	0.205	0.485	4e-31
P48861	508	Aromatic-L-amino-acid dec	N/A	N/A	0.945	0.206	0.485	1e-29
Q05733	847	Histidine decarboxylase O	no	N/A	0.954	0.125	0.481	2e-29
P19113	662	Histidine decarboxylase O	yes	N/A	0.954	0.160	0.481	1e-28
P14173	480	Aromatic-L-amino-acid dec	yes	N/A	0.954	0.220	0.471	2e-28
Q8RY79	490	Tyrosine decarboxylase 1	yes	N/A	0.945	0.214	0.495	6e-28
Q5EA83	658	Histidine decarboxylase O	no	N/A	0.954	0.161	0.481	6e-28
P16453	656	Histidine decarboxylase O	no	N/A	0.918	0.155	0.480	1e-27

>sp|P18486|L2AM_DROME Alpha-methyldopa hypersensitive protein OS=Drosophila melanogaster GN=amd PE=2 SV=2

 Score =  151 bits (381), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 62/105 (59%), Positives = 88/105 (83%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+++EFREFGKAAID+IADY + +R   VLP+V+PGYL  L+P EMPEE E W+ ++ D+
Sbjct: 1   MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
           + VI PG+THWQSPH HA+YP+++S+PSI+GE+L++G GV+ F+W
Sbjct: 61  SRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSW 105

Participates in catecholamine metabolism. It plays a vital role in cuticle development.
Drosophila melanogaster (taxid: 7227)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|P05031|DDC_DROME Aromatic-L-amino-acid decarboxylase OS=Drosophila melanogaster GN=Ddc PE=1 SV=4

 Score =  134 bits (336), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 79/105 (75%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M + EF++F K  +DFIA+Y + +R+R+VLP V+PGYL  L+P   PE+ E W+ +M+D+
Sbjct: 36  MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 95

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             VIMPG+THW SP FHA++P+A+S+P+I+ ++LS  +  + FTW
Sbjct: 96  ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 140

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in life span.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|O96567|DDC_DROSI Aromatic-L-amino-acid decarboxylase OS=Drosophila simulans GN=Ddc PE=3 SV=2

 Score =  133 bits (334), Expect = 4e-31,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 78/105 (74%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M + EF++F K  +DFIA+Y + +R R+VLP V+PGYL  L+P   PE+ E W+ +M+D+
Sbjct: 36  MEAPEFKDFAKTMVDFIAEYLENIRDRRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 95

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             VIMPG+THW SP FHA++P+A+S+P+I+ ++LS  +  + FTW
Sbjct: 96  ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 140

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine. Variation in the synthesis of bioamines may be a factor contributing to natural variation in individual life span.

Drosophila simulans (taxid: 7240)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|P48861|DDC_MANSE Aromatic-L-amino-acid decarboxylase OS=Manduca sexta GN=Ddc PE=2 SV=1

 Score =  128 bits (321), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 77/105 (73%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN  +F++F KA  D+I +Y + +R RQV+PSV+PGYL  LVP + P++ E W  +M D+
Sbjct: 1   MNPGDFKDFAKAMTDYITEYLENIRDRQVVPSVKPGYLRPLVPEQAPQQAEPWTAVMADI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             V+M G+THWQSP FHA++P+A+S+PSI+ ++LS  +  + FTW
Sbjct: 61  ERVVMSGVTHWQSPRFHAYFPTANSYPSIVADMLSGAIACIGFTW 105

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Manduca sexta (taxid: 7130)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|Q05733|DCHS_DROME Histidine decarboxylase OS=Drosophila melanogaster GN=Hdc PE=2 SV=2

 Score =  127 bits (319), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 76/106 (71%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+ +E+R+ GK  +D+IADY + +R+R+V P V PGY+  L+P   P EGE W  I  D+
Sbjct: 1   MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             ++MPGITHWQSPH HA++P+ +S PS+LG++L+  +  L FTW+
Sbjct: 61  ERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWA 106

Required in photoreceptor transmitter synthesis.

Drosophila melanogaster (taxid: 7227)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P19113|DCHS_HUMAN Histidine decarboxylase OS=Homo sapiens GN=HDC PE=1 SV=2

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 74/106 (69%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M  EE+RE G+  +D+I  Y  TVR+R+V P VQPGYL + +P   PE+ + W  I  D+
Sbjct: 2   MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 61

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct: 62  ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P14173|DDC_RAT Aromatic-L-amino-acid decarboxylase OS=Rattus norvegicus GN=Ddc PE=1 SV=1

 Score =  124 bits (310), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 50/106 (47%), Positives = 76/106 (71%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+S EFR  GK  +D+IADY D +  R V P V+PGYL +L+P   P+E E +  I+RD+
Sbjct: 1   MDSREFRRRGKEMVDYIADYLDGIEGRPVYPDVEPGYLRALIPTTAPQEPETYEDIIRDI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W+
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106

Catalyzes the decarboxylation of L-3,4-dihydroxyphenylalanine (DOPA) to dopamine, L-5-hydroxytryptophan to serotonin and L-tryptophan to tryptamine.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 8

>sp|Q8RY79|TYDC1_ARATH Tyrosine decarboxylase 1 OS=Arabidopsis thaliana GN=ELI5 PE=2 SV=1

 Score =  122 bits (307), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 52/105 (49%), Positives = 70/105 (66%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+SE+ RE+G   +DFIADY+ T+    VL  VQPGYL  L+P   P+  E    ++ D+
Sbjct: 12  MDSEQLREYGHLMVDFIADYYKTIEDFPVLSQVQPGYLHKLLPDSAPDHPETLDQVLDDV 71

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
              I+PG+THWQSP F A+YPS SS    LGE+LS GLG++ F+W
Sbjct: 72  RAKILPGVTHWQSPSFFAYYPSNSSVAGFLGEMLSAGLGIVGFSW 116

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 5

>sp|Q5EA83|DCHS_BOVIN Histidine decarboxylase OS=Bos taurus GN=HDC PE=2 SV=1

 Score =  122 bits (306), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 73/106 (68%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M  EE+RE GK  +D+I  Y  TVR+R+V P V+PGYL + +P   P E + W  I  D+
Sbjct: 2   MEPEEYRERGKEMVDYICQYLTTVRERRVTPDVRPGYLRAQLPESAPMEPDSWDSIFGDI 61

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct: 62  ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

>sp|P16453|DCHS_RAT Histidine decarboxylase OS=Rattus norvegicus GN=Hdc PE=2 SV=2

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 72/102 (70%)

Query: 5   EFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVI 64
           E++  GK  +D+I  Y  TVR+RQV P+V+PGYL + +P   PEE + W  I  D+  +I
Sbjct: 9   EYQARGKEMVDYICQYLSTVRERQVTPNVKPGYLRAQIPSSAPEEPDSWDSIFGDIEQII 68

Query: 65  MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
           MPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct: 69  MPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 110

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
157127150	521	aromatic amino acid decarboxylase [Aedes	0.945	0.201	0.619	8e-38
157127148	521	aromatic amino acid decarboxylase [Aedes	0.945	0.201	0.619	8e-38
357611531	501	hypothetical protein KGM_15075 [Danaus p	0.954	0.211	0.603	1e-36
195115244	507	GI13977 [Drosophila mojavensis] gi|19391	0.945	0.207	0.571	2e-36
189237521	439	PREDICTED: similar to aromatic amino aci	0.972	0.246	0.592	2e-36
345493638	519	PREDICTED: aromatic-L-amino-acid decarbo	0.945	0.202	0.590	2e-36
189237523	2575	PREDICTED: similar to AGAP009091-PA [Tri	0.945	0.040	0.590	4e-36
270006966	501	hypothetical protein TcasGA2_TC013401 [T	0.945	0.209	0.590	5e-36
383858387	512	PREDICTED: aromatic-L-amino-acid decarbo	0.945	0.205	0.552	6e-36
194759348	508	GF14702 [Drosophila ananassae] gi|190615	0.945	0.206	0.571	4e-35

>gi|157127150|ref|XP_001661057.1| aromatic amino acid decarboxylase [Aedes aegypti] gi|108873022|gb|EAT37247.1| AAEL010734-PA [Aedes aegypti]

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 85/105 (80%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+ +EF+EFGKAAIDF+ADY   +R R VLPSV+PGYL  L+P E+PE+G+DW+ IM + 
Sbjct: 4   MDIDEFKEFGKAAIDFVADYLVNIRDRDVLPSVEPGYLHDLLPNEIPEKGDDWKTIMEEF 63

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
              I+PG+THWQSPHFHAFYPS +S+ SI+GE L+ GLGV+ F+W
Sbjct: 64  KRFIVPGLTHWQSPHFHAFYPSQTSYSSIVGETLAAGLGVVGFSW 108

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157127148|ref|XP_001661056.1| aromatic amino acid decarboxylase [Aedes aegypti] gi|108873021|gb|EAT37246.1| AAEL010735-PA [Aedes aegypti]

 Score =  160 bits (405), Expect = 8e-38,   Method: Composition-based stats.
 Identities = 65/105 (61%), Positives = 85/105 (80%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+ +EF+EFGKAAIDF+ADY   +R R VLPSV+PGYL  L+P E+PE+G+DW+ IM + 
Sbjct: 4   MDIDEFKEFGKAAIDFVADYLVNIRDRDVLPSVEPGYLHDLLPNEIPEKGDDWKTIMEEF 63

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
              I+PG+THWQSPHFHAFYPS +S+ SI+GE L+ GLGV+ F+W
Sbjct: 64  KRFIVPGLTHWQSPHFHAFYPSQTSYSSIVGETLAAGLGVVGFSW 108

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357611531|gb|EHJ67528.1| hypothetical protein KGM_15075 [Danaus plexippus]

 Score =  156 bits (395), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 64/106 (60%), Positives = 82/106 (77%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MNS+EFRE GKA ID IADYHD +R R VLPSV+PGYL  L+P + PEE ED +++++D 
Sbjct: 1   MNSQEFREIGKATIDLIADYHDNIRNRNVLPSVEPGYLLKLLPEDAPEEPEDHQNVLKDF 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
              IMPGITHWQSP FHA++P+  SF S++G +LS GLGV+  TW+
Sbjct: 61  CETIMPGITHWQSPQFHAYFPTGQSFASMIGSILSDGLGVIGITWN 106

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195115244|ref|XP_002002174.1| GI13977 [Drosophila mojavensis] gi|193912749|gb|EDW11616.1| GI13977 [Drosophila mojavensis]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 60/105 (57%), Positives = 87/105 (82%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+++EFREFGKAA+DF+ADY + +R   VLPSV+PGYL +L+P +MPE  E W  +++D+
Sbjct: 1   MDAQEFREFGKAAVDFVADYLENIRDHDVLPSVEPGYLLNLLPKQMPETPETWSEVLKDI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
           N VI PGITHWQSP+ HA+YP++ S+PSI+GE+L++G G++ F+W
Sbjct: 61  NRVIKPGITHWQSPNMHAYYPTSVSYPSIVGEMLASGFGIMGFSW 105

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237521|ref|XP_973068.2| PREDICTED: similar to aromatic amino acid decarboxylase [Tribolium castaneum] gi|270006967|gb|EFA03415.1| hypothetical protein TcasGA2_TC013402 [Tribolium castaneum]

 Score =  156 bits (394), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 64/108 (59%), Positives = 86/108 (79%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN  EFR+FGK  ID+IADY DT+RQRQV+ SV+PGYL +L+P E PE G+ W  +++D+
Sbjct: 1   MNCAEFRKFGKEIIDYIADYCDTIRQRQVVSSVEPGYLKNLLPAEAPEAGDSWPQVLQDL 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPH 108
           N VI PG+THW SP+FHA+YP+A+S+P I+GELLS GLG++S    P+
Sbjct: 61  NRVIAPGLTHWHSPNFHAYYPTANSYPGIVGELLSAGLGIISTDQFPN 108

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|345493638|ref|XP_003427114.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like isoform 2 [Nasonia vitripennis]

 Score =  155 bits (393), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 85/105 (80%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+ +EFREFGKAAID+IADY + +R R VLPS++PGYL  L+P E PE+ E WR ++ D+
Sbjct: 1   MDDKEFREFGKAAIDYIADYKENLRDRDVLPSIKPGYLCELLPKEAPEKPETWREVLDDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
              IMPGITHW SPHFHA+YP+A+S+P+I+GE++S G+G + F+W
Sbjct: 61  EKHIMPGITHWHSPHFHAYYPTANSYPAIVGEIISAGIGCVGFSW 105

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189237523|ref|XP_973109.2| PREDICTED: similar to AGAP009091-PA [Tribolium castaneum]

 Score =  155 bits (391), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 85/105 (80%)

Query: 1    MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
            M+S++FREFGKAA+D+IADY +TV +R V+  V PGYL  L+P E P+ GE W+ +++D+
Sbjct: 2075 MDSQQFREFGKAAVDYIADYLETVEERPVVAGVAPGYLEKLIPEEPPQAGEKWQEVLQDV 2134

Query: 61   NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
            + +IMPGITHW SPHFHAF+P+ASSFPSI+GE+LS G G +  +W
Sbjct: 2135 DRIIMPGITHWTSPHFHAFFPTASSFPSIVGEMLSAGFGCVGLSW 2179

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270006966|gb|EFA03414.1| hypothetical protein TcasGA2_TC013401 [Tribolium castaneum]

 Score =  154 bits (390), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 62/105 (59%), Positives = 85/105 (80%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+S++FREFGKAA+D+IADY +TV +R V+  V PGYL  L+P E P+ GE W+ +++D+
Sbjct: 1   MDSQQFREFGKAAVDYIADYLETVEERPVVAGVAPGYLEKLIPEEPPQAGEKWQEVLQDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
           + +IMPGITHW SPHFHAF+P+ASSFPSI+GE+LS G G +  +W
Sbjct: 61  DRIIMPGITHWTSPHFHAFFPTASSFPSIVGEMLSAGFGCVGLSW 105

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383858387|ref|XP_003704683.1| PREDICTED: aromatic-L-amino-acid decarboxylase-like [Megachile rotundata]

 Score =  154 bits (389), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 58/105 (55%), Positives = 87/105 (82%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+++EF +FGKAAIDF+A+Y DT+R R+VLP V+PGYL+ L+P E P++ E W+ +++D+
Sbjct: 1   MDTKEFVDFGKAAIDFVANYTDTLRNRKVLPDVEPGYLSELLPEEAPQKAETWQEVLKDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
              I+PG+THW SPHFHAFYP+A+S+P+I+GE+LS G+  + F+W
Sbjct: 61  EEYIIPGVTHWNSPHFHAFYPTANSYPAIVGEILSCGISCIGFSW 105

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194759348|ref|XP_001961911.1| GF14702 [Drosophila ananassae] gi|190615608|gb|EDV31132.1| GF14702 [Drosophila ananassae]

 Score =  151 bits (382), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 60/105 (57%), Positives = 88/105 (83%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M+++EFREFGKAA+DF+ADY + +R   VLPSV+PGYL  L+P EMPE+ E W+ ++ D+
Sbjct: 1   MDAKEFREFGKAAVDFVADYLENIRDDDVLPSVEPGYLLDLLPKEMPEQPESWKEVLGDI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
           N VI PG+THWQSP+ HA+YP+++S+PSI+GE+L++G G++ F+W
Sbjct: 61  NRVIKPGLTHWQSPNMHAYYPTSTSYPSIVGEMLASGFGIIGFSW 105

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	111
FB|FBgn0000075	510	amd "alpha methyl dopa-resista	0.945	0.205	0.590	6.5e-35
FB|FBgn0050446	637	Tdc2 "Tyrosine decarboxylase 2	0.954	0.166	0.518	1.6e-29
FB|FBgn0000422	510	Ddc "Dopa decarboxylase" [Dros	0.945	0.205	0.485	4.3e-29
FB|FBgn0005619	847	Hdc "Histidine decarboxylase"	0.954	0.125	0.481	1.1e-27
UNIPROTKB|E2RMU1	663	HDC "Uncharacterized protein"	0.954	0.159	0.490	1.3e-27
WB|WBGene00006562	705	tdc-1 [Caenorhabditis elegans	0.954	0.150	0.452	1.6e-27
ZFIN|ZDB-GENE-040426-2656	480	ddc "dopa decarboxylase" [Dani	0.954	0.220	0.452	1.8e-27
UNIPROTKB|F1SQH5	662	HDC "Uncharacterized protein"	0.954	0.160	0.490	2.8e-27
UNIPROTKB|B7ZM01	629	HDC "HDC protein" [Homo sapien	0.954	0.168	0.481	3.1e-27
UNIPROTKB|P19113	662	HDC "Histidine decarboxylase"	0.954	0.160	0.481	3.6e-27

FB|FBgn0000075 amd "alpha methyl dopa-resistant" [Drosophila melanogaster (taxid:7227)]

 Score = 378 (138.1 bits), Expect = 6.5e-35, P = 6.5e-35
 Identities = 62/105 (59%), Positives = 88/105 (83%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M+++EFREFGKAAID+IADY + +R   VLP+V+PGYL  L+P EMPEE E W+ ++ D+
Sbjct:     1 MDAKEFREFGKAAIDYIADYLENIRDDDVLPNVEPGYLLDLLPTEMPEEPEAWKDVLGDI 60

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             + VI PG+THWQSPH HA+YP+++S+PSI+GE+L++G GV+ F+W
Sbjct:    61 SRVIKPGLTHWQSPHMHAYYPTSTSYPSIVGEMLASGFGVIGFSW 105

GO:0040003 "chitin-based cuticle development" evidence=NAS;IMP

GO:0006584 "catecholamine metabolic process" evidence=NAS;IMP

GO:0042417 "dopamine metabolic process" evidence=NAS

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISS

GO:0005575 "cellular_component" evidence=ND

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0019239 "deaminase activity" evidence=IDA

GO:0016831 "carboxy-lyase activity" evidence=IDA

FB|FBgn0050446 Tdc2 "Tyrosine decarboxylase 2" [Drosophila melanogaster (taxid:7227)]

 Score = 334 (122.6 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 55/106 (51%), Positives = 80/106 (75%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M+S EFR+ G   +++I +Y +T+ +R+V PSV+PGYL  L+P E P+E EDW  IMRD+
Sbjct:     1 MDSTEFRKRGMEMVEYICNYLETLNERRVTPSVEPGYLRHLLPPEAPQEPEDWDQIMRDV 60

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
                IMPG+THWQ P FHA++P+ +SFPSILG++L  G+G + F+W+
Sbjct:    61 EDKIMPGVTHWQHPRFHAYFPAGNSFPSILGDMLGDGIGCIGFSWA 106

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=ISS

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0018991 "oviposition" evidence=IMP

GO:0004837 "tyrosine decarboxylase activity" evidence=ISS

GO:0048148 "behavioral response to cocaine" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

FB|FBgn0000422 Ddc "Dopa decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 326 (119.8 bits), Expect = 4.3e-29, P = 4.3e-29
 Identities = 51/105 (48%), Positives = 79/105 (75%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M + EF++F K  +DFIA+Y + +R+R+VLP V+PGYL  L+P   PE+ E W+ +M+D+
Sbjct:    36 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 95

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
               VIMPG+THW SP FHA++P+A+S+P+I+ ++LS  +  + FTW
Sbjct:    96 ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 140

GO:0006585 "dopamine biosynthetic process from tyrosine" evidence=IMP

GO:0006587 "serotonin biosynthetic process from tryptophan" evidence=IMP

GO:0004058 "aromatic-L-amino-acid decarboxylase activity" evidence=NAS;IMP;TAS

GO:0007611 "learning or memory" evidence=NAS

GO:0006584 "catecholamine metabolic process" evidence=NAS

GO:0008062 "eclosion rhythm" evidence=NAS

GO:0007619 "courtship behavior" evidence=NAS

GO:0048066 "developmental pigmentation" evidence=TAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0040007 "growth" evidence=IMP

GO:0009611 "response to wounding" evidence=IEP

GO:0040040 "thermosensory behavior" evidence=IMP

GO:0043052 "thermotaxis" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IDA

GO:0048082 "regulation of adult chitin-containing cuticle pigmentation" evidence=IGI;IMP

GO:0035220 "wing disc development" evidence=IMP

GO:0048085 "adult chitin-containing cuticle pigmentation" evidence=IMP

GO:0007616 "long-term memory" evidence=IGI

FB|FBgn0005619 Hdc "Histidine decarboxylase" [Drosophila melanogaster (taxid:7227)]

 Score = 320 (117.7 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 51/106 (48%), Positives = 76/106 (71%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M+ +E+R+ GK  +D+IADY + +R+R+V P V PGY+  L+P   P EGE W  I  D+
Sbjct:     1 MDFKEYRQRGKEMVDYIADYLENIRERRVFPDVSPGYMRQLLPESAPIEGEPWPKIFSDV 60

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               ++MPGITHWQSPH HA++P+ +S PS+LG++L+  +  L FTW+
Sbjct:    61 ERIVMPGITHWQSPHMHAYFPALNSMPSLLGDMLADAINCLGFTWA 106

GO:0004398 "histidine decarboxylase activity" evidence=ISS;NAS;IMP

GO:0042051 "compound eye photoreceptor development" evidence=NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0043052 "thermotaxis" evidence=IMP

UNIPROTKB|E2RMU1 HDC "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 317 (116.6 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 52/106 (49%), Positives = 75/106 (70%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M  EE+RE GK  +D+I  Y  TVR+R+V P V+PGYL + +P   PEE + W +I  D+
Sbjct:     2 MEPEEYRERGKEMVDYICQYLSTVRERRVTPDVRPGYLRAQLPESAPEEPDSWDNIFGDI 61

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct:    62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

GO:0006548 "histidine catabolic process" evidence=IEA

GO:0004398 "histidine decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

WB|WBGene00006562 tdc-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 317 (116.6 bits), Expect = 1.6e-27, P = 1.6e-27
 Identities = 48/106 (45%), Positives = 77/106 (72%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M  +EFR++GK  +D+I DY + +++R+V+P+++PGYL  L+P E P   E +  +M D 
Sbjct:    77 MTRDEFRQYGKETVDYIVDYLENIQKRRVVPAIEPGYLKDLIPSEAPNTPESFESVMEDF 136

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               +IMPGITHWQ P FHA++P+ +SFPSI+ ++LS  +G + F+W+
Sbjct:   137 EKLIMPGITHWQHPRFHAYFPAGNSFPSIIADMLSDAIGCVGFSWA 182

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030424 "axon" evidence=IDA

GO:0004837 "tyrosine decarboxylase activity" evidence=IMP

GO:0006589 "octopamine biosynthetic process" evidence=IMP

ZFIN|ZDB-GENE-040426-2656 ddc "dopa decarboxylase" [Danio rerio (taxid:7955)]

 Score = 310 (114.2 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 48/106 (45%), Positives = 79/106 (74%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M++ EFR  G+  +D++ADY + + +RQV P V+PGYL SL+P E PEE E +  +++D+
Sbjct:     1 MDAAEFRRRGREMVDYVADYIENIEKRQVYPDVEPGYLRSLIPEEAPEEPESYEDVVKDI 60

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               VIMPG+THW SP+F+A++P+A S+P++L ++L   +G + F+W+
Sbjct:    61 ERVIMPGVTHWHSPYFYAYFPTAHSYPAMLADILCGAIGCIGFSWA 106

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0019752 "carboxylic acid metabolic process" evidence=IEA

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016829 "lyase activity" evidence=IEA

UNIPROTKB|F1SQH5 HDC "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 314 (115.6 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 52/106 (49%), Positives = 73/106 (68%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M  EE+RE GK  +D+I  Y  TVR+R+V P V+PGYL   +P   PEE + W  I  D+
Sbjct:     2 MGPEEYRERGKEMVDYICQYLSTVRERRVTPDVRPGYLRGQLPERAPEEPDSWDSIFGDI 61

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct:    62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

GO:0006548 "histidine catabolic process" evidence=IEA

GO:0004398 "histidine decarboxylase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|B7ZM01 HDC "HDC protein" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 51/106 (48%), Positives = 74/106 (69%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M  EE+RE G+  +D+I  Y  TVR+R+V P VQPGYL + +P   PE+ + W  I  D+
Sbjct:     2 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 61

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct:    62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

GO:0006520 "cellular amino acid metabolic process" evidence=IEA

GO:0016831 "carboxy-lyase activity" evidence=IEA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

UNIPROTKB|P19113 HDC "Histidine decarboxylase" [Homo sapiens (taxid:9606)]

 Score = 313 (115.2 bits), Expect = 3.6e-27, P = 3.6e-27
 Identities = 51/106 (48%), Positives = 74/106 (69%)

Query:     1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
             M  EE+RE G+  +D+I  Y  TVR+R+V P VQPGYL + +P   PE+ + W  I  D+
Sbjct:     2 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 61

Query:    61 NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
               +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct:    62 ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 107

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0042423 "catecholamine biosynthetic process" evidence=IEA

GO:0001694 "histamine biosynthetic process" evidence=IEA;IDA

GO:0006548 "histidine catabolic process" evidence=IDA;TAS

GO:0004398 "histidine decarboxylase activity" evidence=IDA;TAS

GO:0006547 "histidine metabolic process" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P23738	DCHS_MOUSE	4, ., 1, ., 1, ., 2, 2	0.5154	0.8738	0.1465	yes	N/A
P18486	L2AM_DROME	4, ., 1, ., 1, ., -	0.5904	0.9459	0.2058	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	111
PLN02880	490	PLN02880, PLN02880, tyrosine decarboxylase	5e-33
PLN02590	539	PLN02590, PLN02590, probable tyrosine decarboxylas	5e-29
pfam00282	373	pfam00282, Pyridoxal_deC, Pyridoxal-dependent deca	7e-24
COG0076	460	COG0076, GadB, Glutamate decarboxylase and related	2e-06

>gnl|CDD|215475 PLN02880, PLN02880, tyrosine decarboxylase

 Score =  119 bits (299), Expect = 5e-33
 Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 2/109 (1%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M++E+ RE G   +DFIADY+ ++    VL  VQPGYL  L+P   P + E    ++ D+
Sbjct: 10  MDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDV 69

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
              I+PG+THWQSP++ A+YPS SS    LGE+LS GL ++ F+W  SP
Sbjct: 70  QAKILPGVTHWQSPNYFAYYPSNSSVAGFLGEMLSAGLNIVGFSWITSP 118

Length = 490

>gnl|CDD|178200 PLN02590, PLN02590, probable tyrosine decarboxylase

 Score =  108 bits (271), Expect = 5e-29
 Identities = 51/109 (46%), Positives = 70/109 (64%), Gaps = 4/109 (3%)

Query: 1   MNSEEFREFGKAAIDFIADYH----DTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHI 56
           M+SE  RE G   +DFIADY+    D+ +   VL  VQPGYL  ++P   PE  E  + +
Sbjct: 54  MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKEL 113

Query: 57  MRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
           + D++  IMPGITHWQSP + A+Y S++S    LGE+L+ GL V+ FTW
Sbjct: 114 LDDVSKKIMPGITHWQSPSYFAYYASSTSVAGFLGEMLNAGLSVVGFTW 162

Length = 539

>gnl|CDD|215836 pfam00282, Pyridoxal_deC, Pyridoxal-dependent decarboxylase conserved domain

 Score = 93.2 bits (232), Expect = 7e-24
 Identities = 32/71 (45%), Positives = 46/71 (64%)

Query: 35  PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELL 94
           PGYL  L+P   P   E    I+ D+   IMPG+T W SP+FHA++P+ +S+PS+LG++L
Sbjct: 1   PGYLRPLLPEAAPIIPEPLLDILGDIRKNIMPGVTTWHSPNFHAYFPAGNSYPSLLGDML 60

Query: 95  STGLGVLSFTW 105
           S  +    FTW
Sbjct: 61  SDAINCNGFTW 71

Length = 373

>gnl|CDD|223154 COG0076, GadB, Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

 Score = 44.3 bits (105), Expect = 2e-06
 Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 3/97 (3%)

Query: 14  IDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMN-TVIMPGITHWQ 72
           ID + D      +R    S+ P + A       PE+GE    ++ ++   +I   +    
Sbjct: 1   IDGLIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDG 60

Query: 73  SPHFHAFYPSASSFPSILGELLSTGL--GVLSFTWSP 107
            P  +      +  P +  ELL + L   +     SP
Sbjct: 61  HPRANLAGFCPTRVPPVAAELLVSALNKNLGDPDESP 97

Length = 460

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	111
KOG0628|consensus	511		99.96
PLN02590	539	probable tyrosine decarboxylase	99.96
PLN02880	490	tyrosine decarboxylase	99.95
KOG0629|consensus	510		99.76
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.71
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.7
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	99.67
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	98.75
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	98.49
PLN02263	470	serine decarboxylase	97.18
PRK00451	447	glycine dehydrogenase subunit 1; Validated	96.42
PRK02769	380	histidine decarboxylase; Provisional	91.05

>KOG0628|consensus

Probab=99.96  E-value=2.2e-29  Score=186.02  Aligned_cols=110  Identities=54%  Similarity=1.126  Sum_probs=108.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||.++||+.+.+++|+|+||++++++++|.|.++|+.++++++...|+.|+++++|++++.+.|+|+.+||+||+||+|+
T Consensus         1 Md~~efR~~gk~mVD~IadY~e~ir~r~v~P~v~PGYl~~llP~~aPe~pE~~~~Il~D~ekiI~PGitHw~hP~fhAyf   80 (511)
T KOG0628|consen    1 MDSEEFREEGKEMVDYIADYLENIRKRRVLPDVKPGYLRDLLPSKAPEKPESWEDILGDLEKIIMPGITHWQHPHFHAYF   80 (511)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcchhhhhCCCCCCCChhhHHHHHHHHHHHccCCCcccCCCceeeEc
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      |++.++.|++||+|+++++..+++|.+||+
T Consensus        81 pa~~s~~siladmLs~~i~~vGFtW~ssPa  110 (511)
T KOG0628|consen   81 PAGNSYPSILADMLSGGIGCVGFTWASSPA  110 (511)
T ss_pred             cCccchHHHHHHHHhcccccccceeecCcc
Confidence            999999999999999999999999999996

>PLN02590 probable tyrosine decarboxylase

Probab=99.96  E-value=1.8e-28  Score=187.43  Aligned_cols=110  Identities=45%  Similarity=0.865  Sum_probs=107.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccC----CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQ----RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHF   76 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~----~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf   76 (111)
                      ||.++||+.++++++++.+|++++.+    +||.+.+.|++++++++.++|++|.+++++++++.+.|+++.++++||||
T Consensus        54 m~~~~~r~~~~~~~d~i~~~~~~~~~~~~~~pv~~~~~p~~l~~~l~~~~P~~g~~~~~il~~~~~~i~p~~~~~~hP~f  133 (539)
T PLN02590         54 MDSELLREQGHIMVDFIADYYKNLQDSPQDFPVLSQVQPGYLRDMLPDSAPERPESLKELLDDVSKKIMPGITHWQSPSY  133 (539)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCCCChHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCcCCCCCe
Confidence            78999999999999999999999886    79999999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          77 HAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        77 ~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      |||+++++++++++||||++++|+++++|++||+
T Consensus       134 ~a~~~~~~~~~~~lgd~l~sa~n~~~~~~~~sPa  167 (539)
T PLN02590        134 FAYYASSTSVAGFLGEMLNAGLSVVGFTWLTSPA  167 (539)
T ss_pred             eEeccCCCcHHHHHHHHHHHhcccccCCcccCch
Confidence            9999999999999999999999999999999997

>PLN02880 tyrosine decarboxylase

Probab=99.95  E-value=3.1e-27  Score=179.41  Aligned_cols=111  Identities=43%  Similarity=0.888  Sum_probs=108.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||.++||+.++++++++.+|++++.++||.+...|+++++.++..+|++|.+++++++++.+.|++++++++|||||||+
T Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~~~~~~~~l~~~~~~i~~~~~~~~hP~f~~~~   89 (490)
T PLN02880         10 MDAEQLRECGHRMVDFIADYYKSIENFPVLSQVQPGYLRELLPDSAPNQPETLDQVLDDVQAKILPGVTHWQSPNYFAYY   89 (490)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEec
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVGT  111 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg~  111 (111)
                      ++++++++++||+|++++|+++++|++||+.
T Consensus        90 ~~~~~~~~~lad~l~~~~n~~~~~~~~sp~~  120 (490)
T PLN02880         90 PSNSSVAGFLGEMLSAGLNIVGFSWITSPAA  120 (490)
T ss_pred             cCCCcHHHHHHHHHHHhhccCCcccccCccc
Confidence            9999999999999999999999999999973

>KOG0629|consensus

Probab=99.76  E-value=2.1e-18  Score=127.27  Aligned_cols=106  Identities=22%  Similarity=0.241  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhcc--CCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccccc
Q psy3051           4 EEFREFGKAAIDFIADYHDTVR--QRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYP   81 (111)
Q Consensus         4 ~~~~~~~~~~~~~i~~~~~~~~--~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~   81 (111)
                      +..+.++.++++.+.+|...-.  +.+|..+..|++|+++++..+|+++.++++++.++++ .+.|+++|+|||||+++.
T Consensus        31 ~~te~fl~~v~~~ll~~v~~~~dr~~kv~~fhhP~~L~~l~nlel~~~~esl~qil~~cr~-tl~y~vKTgHprffNQl~  109 (510)
T KOG0629|consen   31 EVTEPFLRAVVDILLDYVKKGFDRSQKVLDFHHPDELKELFNLELRDQPESLAQILEDCRD-TLKYSVKTGHPRFFNQLS  109 (510)
T ss_pred             hhhHhhhHHHHHHHHHhhccCCcccceeecccChHHHHHHhCcccCCChhhHHHHHHHHHH-HHHhhhccCCCcchhhhc
Confidence            3457888999999999966543  3589999999999999999999999999999999997 789999999999999999


Q ss_pred             CCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          82 SASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        82 ~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ++-++.|++|+||+++.|.++++|+.+|+
T Consensus       110 ~glD~~~Lag~wlT~t~Ntn~~TYEiAPv  138 (510)
T KOG0629|consen  110 SGLDPIGLAGEWLTSTANTNMFTYEIAPV  138 (510)
T ss_pred             cCCCHHHHHHHHHHhccCCCCceEEecce
Confidence            99999999999999999999999999996

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.71  E-value=4.2e-17  Score=125.00  Aligned_cols=100  Identities=16%  Similarity=0.124  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHHHHHHHhh--ccCCCCCCCCChhHHhhc-CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccccc
Q psy3051           5 EFREFGKAAIDFIADYHDT--VRQRQVLPSVQPGYLASL-VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYP   81 (111)
Q Consensus         5 ~~~~~~~~~~~~i~~~~~~--~~~~pv~~~~~p~~l~~~-~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~   81 (111)
                      +++++.+++.+.+++++.+  ....++.+     +++.. ....+|++|.+.+++++++.+.+++++++|+|||||||++
T Consensus        23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~hP~f~g~~~   97 (522)
T TIGR03799        23 TLGRIEQKISQNLAGFLQEHIVAIEKPLS-----EIEKDFSSAEIPEQPTFVSEHTQFLLDKLVAHSVHTASPSFIGHMT   97 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhccCCCch-----hhhhcccccCCCCCCCChHHHHHHHHHHHHcCCCCCCCCCeEEecc
Confidence            4566666666666666665  33334433     34433 3568999999999999999999999999999999999999


Q ss_pred             CC-CCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          82 SA-SSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        82 ~~-~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ++ +.+.+.++| |++++|+|+.+|++||+
T Consensus        98 ~~~p~~~~~l~~-l~~~lN~n~~~~~~spa  126 (522)
T TIGR03799        98 SALPYFMLPLSK-LMVALNQNLVKIETSKA  126 (522)
T ss_pred             CCCchHHHHHHH-HHHHhcCCcceeecCcc
Confidence            97 555566888 78899999999999997

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.70  E-value=4.7e-18  Score=125.69  Aligned_cols=76  Identities=38%  Similarity=0.812  Sum_probs=68.4

Q ss_pred             hhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          35 PGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        35 p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      |+++++.++..+|++|.+++++++++.+.+.++..+++|||||||+++++++++++||+|++++|+|+..|+.||+
T Consensus         1 P~~l~~~~~~~lp~~~~~~~~vl~~~~~~l~~~~~~~~~P~~~~~~~~~~~~~~i~~~~l~~~~n~n~~~~~~~P~   76 (373)
T PF00282_consen    1 PGELRARLDEELPEEGESLEEVLKDLREILAPGVTHWHHPRFFGFVPGGPSPASILADLLASALNQNGFTWEASPA   76 (373)
T ss_dssp             TTSSGGGCHCCHHSSHH-HHHHHHHHHHHTHGCS-TTTSTTBESSSHT--CHHHHHHHHHHHHHT-BTTSTTTSHH
T ss_pred             ChhhhhcCccccccCCCCHHHHHHHHHHHhhccCCCCCChhHhhhccCCccHHHHHHHHHHhhhcccccccccccc
Confidence            6789999999999999999999999999999999999999999999999999999999999999999999999984

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=99.67  E-value=6.1e-16  Score=120.14  Aligned_cols=105  Identities=11%  Similarity=0.243  Sum_probs=89.4

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhccC-CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCc-ccccc
Q psy3051           2 NSEEFREFGKAAIDFIADYHDTVRQ-RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSP-HFHAF   79 (111)
Q Consensus         2 ~~~~~~~~~~~~~~~i~~~~~~~~~-~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hP-rf~~~   79 (111)
                      +.+.||+++.++++.+.++.++... .|  +..+++++++   ....+...+++++++++.+.+.+++++++|| ||+||
T Consensus        15 n~~~~~~~~~~~~~~~~~~r~~~~p~d~--~~~~~~~~~~---~~~~~~~~~~~~~l~~l~~~l~~~sv~~~~P~ry~gh   89 (608)
T TIGR03811        15 NGQLYKDLLNKLVDEHLGWRQNYMPQDK--PVISPQERTS---KSFTKTVNNMKDVLDELSSRLRTESVPWHSAGRYWGH   89 (608)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHhcCCCCC--CCCCHHHhcc---cccccCccCHHHHHHHHHHHHhcCCCCCCCccceEEE
Confidence            3567999999999999998877321 11  4556777666   2556667789999999999899999999999 99999


Q ss_pred             ccCCCCHHHHHHHHHHhhhCcCCcccccCCCC
Q psy3051          80 YPSASSFPSILGELLSTGLGVLSFTWSPHVGT  111 (111)
Q Consensus        80 v~~~~~~~s~lad~l~sa~N~~~~~~~~spg~  111 (111)
                      ++++++++|++||++++++|+|+.+|++||++
T Consensus        90 m~~~~~~paila~~~a~~~N~n~~~~e~SP~~  121 (608)
T TIGR03811        90 MNSETLMPAILAYNYAMLWNGNNVAYESSPAT  121 (608)
T ss_pred             CcCCCCHHHHHHHHHHHHhCCCCCccccCchH
Confidence            99999999999999999999999999999985

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=98.75  E-value=3.6e-08  Score=75.09  Aligned_cols=95  Identities=17%  Similarity=0.115  Sum_probs=73.5

Q ss_pred             HHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHh-hcCCCCccCCccccccccCCCCHHHHHHHHHH
Q psy3051          17 IADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTV-IMPGITHWQSPHFHAFYPSASSFPSILGELLS   95 (111)
Q Consensus        17 i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~-v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~   95 (111)
                      +.++......+.+.....+-.-.......+|+.|.+.++++.++... +.+...+..||+++.|..+++.+..+++++++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~p~~~v~~~l~~~~~~d~~~~~~~p~~~~~~~~~~~~~~~a~~~~~   83 (460)
T COG0076           4 LIDKDMLNSKRYSGDSLSPLFGALSDSRMAPEKGEPLEEVLDELAELLIKDELYLDGHPRANLAGFCPTRVPPVAAELLV   83 (460)
T ss_pred             HHHHHHhhccCCCccccccchhhhhhhccCCccCCchhhHHHHHHHHhhcccccccCCcceEEEccCCCCCHHHHHHHHH
Confidence            34444444444433433443333444568899999999999999988 55556666799999999999999999999999


Q ss_pred             hhhCcCCcccccCCCC
Q psy3051          96 TGLGVLSFTWSPHVGT  111 (111)
Q Consensus        96 sa~N~~~~~~~~spg~  111 (111)
                      .++|+|++.|..+|++
T Consensus        84 ~~~~~nl~d~~~~p~a   99 (460)
T COG0076          84 SALNKNLGDPDESPAA   99 (460)
T ss_pred             HHHhhcCCCcccChhH
Confidence            9999999999999974

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=98.49  E-value=3e-07  Score=69.59  Aligned_cols=64  Identities=9%  Similarity=-0.008  Sum_probs=56.9

Q ss_pred             CCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          43 PGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        43 ~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ..++|++|.+.+++++++...+  |..+..||||++|+.++..+.  +.|++.+++|++.+.|..+|+
T Consensus        14 ~~~~p~~~~~~~~~~~~~~~~i--yld~~a~~~~~~~~tt~~~p~--~~~~~~~~l~~~~~np~s~~~   77 (431)
T TIGR01788        14 KYRMPEEEMPPDAAYQLIHDEL--SLDGNPRLNLATFVTTWMEPE--ARKLMDETINKNMIDKDEYPQ   77 (431)
T ss_pred             cccCCCCCCCHHHHHHHHHHHh--hhcCCcceeeeeeeCCCCCHH--HHHHHHHHHhcCCCCcccCcc
Confidence            4589999999999999999865  457888999999999999888  699999999999999988775

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>PLN02263 serine decarboxylase

Probab=97.18  E-value=0.00062  Score=52.30  Aligned_cols=51  Identities=14%  Similarity=0.232  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHhhcCCCCccCCccccccccCCCCH-HHHHHHHHHhhhCcCCcccccCC
Q psy3051          53 WRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSF-PSILGELLSTGLGVLSFTWSPHV  109 (111)
Q Consensus        53 ~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~-~s~lad~l~sa~N~~~~~~~~sp  109 (111)
                      .+++|+++.+.++++..+     |||| |.+.++ ++.++++|...+|+.++.|..||
T Consensus        75 ~~~~l~~~~~~~~~~~~~-----~~gY-p~n~~~d~s~l~~~l~~~~nN~Gdp~~~s~  126 (470)
T PLN02263         75 MASVLARYRKTLVERTKH-----HLGY-PYNLDFDYGALGQLQHFSINNLGDPFIESN  126 (470)
T ss_pred             HHHHHHHHHHHHHhcccc-----eeCC-CCcccCChhhHHHHHHhhccCCCCccccCC
Confidence            689999999999886665     9999 999999 99999999999999999999987

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=96.42  E-value=0.0051  Score=46.50  Aligned_cols=68  Identities=15%  Similarity=0.162  Sum_probs=50.5

Q ss_pred             ChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccc------cccCCCCHHHHHHHHHHhhhCcCCc
Q psy3051          34 QPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHA------FYPSASSFPSILGELLSTGLGVLSF  103 (111)
Q Consensus        34 ~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~------~v~~~~~~~s~lad~l~sa~N~~~~  103 (111)
                      -|++++...+.++|+++ +.+++++++.+....+.....|++|+|      +++.....+...++++++ +|.+..
T Consensus        31 ~p~~~~~~~~~~lp~~~-~~~~v~~~~~~~~~~~~~~~~~~~~lg~g~~~~~~p~~~~~~~~~~~~~~~-y~~~~~  104 (447)
T PRK00451         31 IPEELRLKRPLDLPPGL-SEMELLRHLRELAAKNKTAEEYPSFLGAGAYDHYIPAVVDHIISRSEFYTA-YTPYQP  104 (447)
T ss_pred             CCHHHHhCCCCCCCCCC-CHHHHHHHHHHHHhcCCCcCcCcccCcccccCCcCcHHHHHHHhchhHHHh-cCCCCC
Confidence            47888888888899976 999999999986666666677999999      555444455555677766 676443

>PRK02769 histidine decarboxylase; Provisional

Probab=91.05  E-value=0.3  Score=36.64  Aligned_cols=49  Identities=18%  Similarity=0.183  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhhcCCCCccCCccccccccCCCCH-HHHHHHHHHhhhCcCCcccccCC
Q psy3051          54 RHIMRDMNTVIMPGITHWQSPHFHAFYPSASSF-PSILGELLSTGLGVLSFTWSPHV  109 (111)
Q Consensus        54 ~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~-~s~lad~l~sa~N~~~~~~~~sp  109 (111)
                      .+.|+++...+      -+||+||.+++...++ .+.+++++....|+. +.|..++
T Consensus         8 ~~~~~~~~~~~------~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~n~-gnp~~~~   57 (380)
T PRK02769          8 QKEIEDFWLYL------RHNQYFNVGYPEAADFDYSALKRFFSFSINNC-GDPYSKS   57 (380)
T ss_pred             HHHHHHHHHHH------HHhhhcccCCCchhhcCHHHHHHHHHhhhccC-CCccccC
Confidence            45566666543      3699999999998888 699999999999874 4565554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	111
3k40_A	475	Crystal Structure Of Drosophila 3,4-Dihydroxyphenyl		2e-32
4e1o_A	481	Human Histidine Decarboxylase Complex With Histidin		1e-29
1js3_A	486	Crystal Structure Of Dopa Decarboxylase In Complex		2e-28
3rch_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		5e-28
3rbf_A	480	Crystal Structure Of Human Aromatic L-Amino Acid De		5e-28

>pdb|3K40|A Chain A, Crystal Structure Of Drosophila 3,4-Dihydroxyphenylalanine Decarboxylase Length = 475

Iteration: 1
 Score =  134 bits (336), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 51/105 (48%), Positives = 79/105 (75%)
Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M + EF++F K  +DFIA+Y + +R+R+VLP V+PGYL  L+P   PE+ E W+ +M+D+
Sbjct: 1   MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60
Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             VIMPG+THW SP FHA++P+A+S+P+I+ ++LS  +  + FTW
Sbjct: 61  ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 105

>pdb|4E1O|A Chain A, Human Histidine Decarboxylase Complex With Histidine Methyl Ester (Hme) Length = 481

Iteration: 1
 Score =  124 bits (311), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 51/106 (48%), Positives = 74/106 (69%)
Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M  EE+RE G+  +D+I  Y  TVR+R+V P VQPGYL + +P   PE+ + W  I  D+
Sbjct: 6   MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65
Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW+
Sbjct: 66  ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTWA 111

>pdb|1JS3|A Chain A, Crystal Structure Of Dopa Decarboxylase In Complex With The Inhibitor Carbidopa Length = 486

Iteration: 1
 Score =  120 bits (301), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 47/106 (44%), Positives = 76/106 (71%)
Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ +FR  GK  +D++ADY + +  RQV P VQPGYL  L+P   P+E + +  I++D+
Sbjct: 1   MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60
Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W+
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106

>pdb|3RCH|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Open Conformation With Llp And Plp Bound To Chain-A And Chain- B Respectively Length = 480

Iteration: 1
 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ EFR  GK  +D++A+Y + +  RQV P V+PGYL  L+P   P+E + +  I+ D+
Sbjct: 1   MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W+
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106

>pdb|3RBF|A Chain A, Crystal Structure Of Human Aromatic L-Amino Acid Decarboxylase (Aadc) In The Apo Form Length = 480

Iteration: 1
 Score =  119 bits (297), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 75/106 (70%)
Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ EFR  GK  +D++A+Y + +  RQV P V+PGYL  L+P   P+E + +  I+ D+
Sbjct: 1   MNASEFRRRGKEMVDYVANYMEGIEGRQVYPDVEPGYLRPLIPAAAPQEPDTFEDIINDV 60
Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS 106
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W+
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSWA 106

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	111
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	2e-42
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	5e-42
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	2e-41
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	1e-36
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	2e-36
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	1e-32

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} Length = 475

 Score =  143 bits (363), Expect = 2e-42
 Identities = 51/105 (48%), Positives = 79/105 (75%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M + EF++F K  +DFIA+Y + +R+R+VLP V+PGYL  L+P   PE+ E W+ +M+D+
Sbjct: 1   MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDI 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             VIMPG+THW SP FHA++P+A+S+P+I+ ++LS  +  + FTW
Sbjct: 61  ERVIMPGVTHWHSPKFHAYFPTANSYPAIVADMLSGAIACIGFTW 105

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A* Length = 486

 Score =  142 bits (360), Expect = 5e-42
 Identities = 47/105 (44%), Positives = 75/105 (71%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ +FR  GK  +D++ADY + +  RQV P VQPGYL  L+P   P+E + +  I++D+
Sbjct: 1   MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens} Length = 481

 Score =  141 bits (357), Expect = 2e-41
 Identities = 51/105 (48%), Positives = 73/105 (69%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           M  EE+RE G+  +D+I  Y  TVR+R+V P VQPGYL + +P   PE+ + W  I  D+
Sbjct: 6   MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDI 65

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             +IMPG+ HWQSPH HA+YP+ +S+PS+LG++L+  +  L FTW
Sbjct: 66  ERIIMPGVVHWQSPHMHAYYPALTSWPSLLGDMLADAINCLGFTW 110

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A* Length = 504

 Score =  128 bits (323), Expect = 1e-36
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 8/113 (7%)

Query: 2   NSEEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASLVPG---EMPEEGEDWRHI 56
             E+  +F    +D + +Y      R  +VL    P  L   + G   E+ +  E    I
Sbjct: 17  GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQI 76

Query: 57  MRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
           + D    +  G+     P F     +      + GE L++      FT+  +P
Sbjct: 77  LVDCRDTLKYGVRTGH-PRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAP 128

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus} Length = 497

 Score =  128 bits (323), Expect = 2e-36
 Identities = 14/110 (12%), Positives = 34/110 (30%), Gaps = 5/110 (4%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRD 59
           + S EF          +    + V        + P  L   +   ++  +    + ++ D
Sbjct: 29  LGSAEFASVMSHTTSAMKSVFEQVNA--PYSGMDPKALEDAINAVDLDNKNAPLKSVIDD 86

Query: 60  MNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
           +  ++       Q P   A   +    P++  E +   L     +W  + 
Sbjct: 87  VAELVAKNAIFTQHPDCIAHLHTPPLMPAVAAEAMIAALNQSMDSWDQAS 136

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens} Length = 515

 Score =  117 bits (295), Expect = 1e-32
 Identities = 21/106 (19%), Positives = 39/106 (36%), Gaps = 4/106 (3%)

Query: 4   EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTV 63
              R      +D       +V Q+ V    +P  L  L+  E+  +GE  + I+     V
Sbjct: 41  ALLRAVFGVVVDEAIQKGTSVSQK-VCEWKEPEELKQLLDLELRSQGESQKQILERCRAV 99

Query: 64  IMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW--SP 107
           I   +     P F     S     ++ G +++  L    +T+  +P
Sbjct: 100 IRYSVKTG-HPRFFNQLFSGLDPHALAGRIITESLNTSQYTYEIAP 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	111
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.93
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.92
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.87
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.84
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.82
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.79
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.74
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	98.42
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	97.18
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.1
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	97.07
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	96.83
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	95.34
3ip4_C	100	Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase;	81.75

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.93  E-value=9.3e-26  Score=169.09  Aligned_cols=110  Identities=46%  Similarity=1.063  Sum_probs=107.6

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||.++||+.++++++.+++|+++++++||.+.+.|+++++.++..+|++|.+.+++++++.+.++++.++|+|||||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (475)
T 3k40_A            1 MEAPEFKDFAKTMVDFIAEYLENIRERRVLPEVKPGYLKPLIPDAAPEKPEKWQDVMQDIERVIMPGVTHWHSPKFHAYF   80 (475)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCSSCTTCSGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTCTTBCCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhccCCCCCCcCceeeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      +++++++++++|+|++++|+++..|..+|+
T Consensus        81 ~~~~~~~~~~~~~l~~~~n~~~~~~~~~p~  110 (475)
T 3k40_A           81 PTANSYPAIVADMLSGAIACIGFTWIASPA  110 (475)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCSSSCCCCHH
T ss_pred             CCCCcHHHHHHHHHHHHhCccccCccCCcH
Confidence            999999999999999999999999999986

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.92  E-value=6.2e-25  Score=164.65  Aligned_cols=110  Identities=46%  Similarity=1.019  Sum_probs=107.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||.++||+.++++++.+.+|+++++++||.+.+.|+++++.++..+|++|.+.+++++++.+.++++.++|+|||||||+
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   85 (481)
T 4e1o_A            6 MEPEEYRERGREMVDYICQYLSTVRERRVTPDVQPGYLRAQLPESAPEDPDSWDSIFGDIERIIMPGVVHWQSPHMHAYY   85 (481)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHSGGGSCSSCCCCTTTTGGGSCSSCCSSCCCHHHHHHHHHHHTGGGCCCTTSTTBCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhccccCCCCCCCCHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEeC
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      +++++++++++|++++++|+++..|..+|+
T Consensus        86 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~p~  115 (481)
T 4e1o_A           86 PALTSWPSLLGDMLADAINCLGFTWASSPA  115 (481)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCCSSTTTCHH
T ss_pred             CCCCCHHHHHHHHHHHHhCcccCCcCCCcH
Confidence            999999999999999999999999999986

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.87  E-value=3.7e-22  Score=149.12  Aligned_cols=110  Identities=43%  Similarity=0.976  Sum_probs=106.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||.++||++++++++.+.+|+++++++||.+...|+++++.++..+|++|.+.+++++++.+.+.++.++++||+||||+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~   80 (486)
T 1js3_A            1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF   80 (486)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCHHHHHHhccccCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCceEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999899999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ++++++++.++|++++++|++...|..+|+
T Consensus        81 ~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~  110 (486)
T 1js3_A           81 PTASSYPAMLADMLCGAIGCIGFSWAASPA  110 (486)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCCSSGGGCHH
T ss_pred             CCCCCHHHHHHHHHHHHhCcCccccccChh
Confidence            999999999999999999999999998874

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.84  E-value=1.1e-20  Score=142.68  Aligned_cols=108  Identities=19%  Similarity=0.209  Sum_probs=99.7

Q ss_pred             CHHHHHHHHHHHHHHHHHHHhhccCC--CCCCCCChhHHhhc---CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccc
Q psy3051           2 NSEEFREFGKAAIDFIADYHDTVRQR--QVLPSVQPGYLASL---VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHF   76 (111)
Q Consensus         2 ~~~~~~~~~~~~~~~i~~~~~~~~~~--pv~~~~~p~~l~~~---~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf   76 (111)
                      +.+++|++++++++.+++|++++.++  +|++...|++++..   ++.++|++|.+.+++++++.+ ++.+.++++||||
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~f   98 (511)
T 3vp6_A           20 GEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRD-TLKYGVRTGHPRF   98 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHHCBTTBCCCCCSSCCCHHHHHHHHHH-HHHTSCCTTSTTE
T ss_pred             ChHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCHHHHHHHHhhCCCCCCCCCCCHHHHHHHHHH-HhhccCCCCCCCc
Confidence            46789999999999999999997654  57888999999999   889999999999999999997 5677899999999


Q ss_pred             cccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          77 HAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        77 ~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      |||++++.+++++++|++++++|++...|..+|+
T Consensus        99 ~~~~~~~~~~~~~~~e~l~~~~~~~~~~~~~~p~  132 (511)
T 3vp6_A           99 FNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPV  132 (511)
T ss_dssp             ESSSSCCCCHHHHHHHHHHHHHCCCSSCTTTCHH
T ss_pred             eEeecCCCcHHHHHHHHHHHHhccCCCCcccCch
Confidence            9999999999999999999999999999999885

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.82  E-value=8.4e-20  Score=137.08  Aligned_cols=109  Identities=17%  Similarity=0.186  Sum_probs=101.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccC--CCCCCCCChhHHhhc---CCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQ--RQVLPSVQPGYLASL---VPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPH   75 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~--~pv~~~~~p~~l~~~---~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPr   75 (111)
                      |+.+++|++++++++++.+|++++.+  ++|.+.+.|+++++.   ++..+|++|.+.+++++++.+ ++.+.++++||+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~   94 (504)
T 2okj_A           16 NGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRD-TLKYGVRTGHPR   94 (504)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHTCTTSCSCCCCCHHHHHSCBTTBCCCCCSSCCCHHHHHHHHHH-HHHTSCCTTCTT
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCHHHHHHHhhccCCCCCCCCCCHHHHHHHHHH-HhhccCCCCCCC
Confidence            78999999999999999999999766  459999999999999   899999999999999999986 678888888999


Q ss_pred             ccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          76 FHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        76 f~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ||+|++++..+.++++|++++++|+++++|..+|+
T Consensus        95 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~  129 (504)
T 2okj_A           95 FFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPV  129 (504)
T ss_dssp             EESSSSCCCCHHHHHHHHHHHHHCCBSSCTTTCHH
T ss_pred             EEEEccCCCCHHHHHHHHHHHhhccCCCchhhChH
Confidence            99999999999999999999999999999998874

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.79  E-value=3.9e-19  Score=133.96  Aligned_cols=109  Identities=15%  Similarity=0.189  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHHHHHH-HHhhccC--CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCcccc
Q psy3051           1 MNSEEFREFGKAAIDFIAD-YHDTVRQ--RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFH   77 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~-~~~~~~~--~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~   77 (111)
                      ||.+++|++++++++++++ |+++..+  +||.+...|++++..++..+|++|.+.+++++++.+ ++.+.++++||+||
T Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~p~~l~~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~  112 (515)
T 2jis_A           34 GDPVAVEALLRAVFGVVVDEAIQKGTSVSQKVCEWKEPEELKQLLDLELRSQGESQKQILERCRA-VIRYSVKTGHPRFF  112 (515)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTTTGGGCTTSCSCCCCCHHHHHHHHCCCCCSSCCCHHHHHHHHHH-HHHHSCCTTSTTEE
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCCHHHHHhhcccCCCCCCCCHHHHHHHHHH-HhcCCCCCCCCCeE
Confidence            6899999999999999999 9998764  499999999999999999999999999999999986 67788888899999


Q ss_pred             ccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          78 AFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        78 ~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      +|++++..+.++++|++++..|++.+.|..+|+
T Consensus       113 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~s~~  145 (515)
T 2jis_A          113 NQLFSGLDPHALAGRIITESLNTSQYTYEIAPV  145 (515)
T ss_dssp             SSSCCCCCHHHHHHHHHHHHHCCCTTCTTTCHH
T ss_pred             EEeeCCCCHHHHHHHHHHHHhccCCCchhhchH
Confidence            999999999999999999999999999998875

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.74  E-value=1.3e-17  Score=124.99  Aligned_cols=108  Identities=13%  Similarity=0.257  Sum_probs=99.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHHhhcCCCCccCCcccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAF   79 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~   79 (111)
                      ++.++||+.++++++.+.+|+++.+ + +++...|+++++.++. .+|++|.+.+++++++.+.++++.++++||+||+|
T Consensus        29 ~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~yl~~  106 (497)
T 2qma_A           29 LGSAEFASVMSHTTSAMKSVFEQVN-A-PYSGMDPKALEDAINAVDLDNKNAPLKSVIDDVAELVAKNAIFTQHPDCIAH  106 (497)
T ss_dssp             TTTHHHHHHHHHHHHHHHHHHHHCC-S-SSCCCCHHHHHHHHHTCCSSSCCCCHHHHHHHHHHHTTTTSCCTTSTTBCSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHhhcc-C-CCCCCCHHHHHHhccccCCCCCCCCHHHHHHHHHHHHhcCCCCCCCCCeeEe
Confidence            4778999999999999999999873 3 4788889999998876 57999999999999999999999999999999999


Q ss_pred             ccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          80 YPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        80 v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      +.++..+.+++++++..++|++...|..+|+
T Consensus       107 ~~~~~~~~~v~~~~~~~~~n~~~~~~~~~~~  137 (497)
T 2qma_A          107 LHTPPLMPAVAAEAMIAALNQSMDSWDQASS  137 (497)
T ss_dssp             SCCCCBHHHHHHHHHHHHHCCCTTCGGGCHH
T ss_pred             CCCCCcHHHHHHHHHHHhhcccccchhhChH
Confidence            9999999999999999999999999998874

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=98.42  E-value=2.2e-07  Score=68.59  Aligned_cols=72  Identities=7%  Similarity=-0.024  Sum_probs=54.2

Q ss_pred             ChhHHhhcCCCCCCCCCcCHHHHHHHHHHhh-cCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          34 QPGYLASLVPGEMPEEGEDWRHIMRDMNTVI-MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        34 ~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v-~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      +...++.+++..+|++|.+.+++++++.+.+ .++..+++||+|++   ....  ..++|+++.++|++...|..+|+
T Consensus         6 ~~~~~~~~~~~~lp~~g~~~~~v~~~~~~~~~~~~~~~~~~~~f~~---~~~~--~~v~e~~~~a~~~~~~~~~~~~~   78 (452)
T 2dgk_A            6 AKSISTIAESKRFPLHEMRDDVAFQIINDELYLDGNARQNLATFCQ---TWDD--ENVHKLMDLSINKNWIDKEEYPQ   78 (452)
T ss_dssp             ---------CCSCCCSCCCHHHHHHHHHHHGGGSCCCTTBCSCCSC---CCCC--HHHHHHHHHTTTCBTTCTTTCHH
T ss_pred             chHHhhhccCCCCCCCCCCHHHHHHHHHHHhcCCCCCccCCCCeeC---CCch--HHHHHHHHHHhccCCCChhhChh
Confidence            4456677888899999999999999999987 68888999999997   2222  45899999999999888888775

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=97.18  E-value=0.00075  Score=50.60  Aligned_cols=76  Identities=12%  Similarity=0.107  Sum_probs=57.6

Q ss_pred             CCCChhHHhhcCCC-CCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCC
Q psy3051          31 PSVQPGYLASLVPG-EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHV  109 (111)
Q Consensus        31 ~~~~p~~l~~~~~~-~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~sp  109 (111)
                      +...+..+++.++. .+|++|.+.+++++.+.+.+.    ..+||+|+..-.++..+...+.+++..++|++...|..+|
T Consensus        16 ~~~~~~~~~~~lp~~~~p~~~~~~~~~~~~~~~~i~----l~gnp~~~l~s~~t~~~~~~v~~~l~~~~~~~~~~~~~~p   91 (502)
T 3hbx_A           16 STFASRYVRTSLPRFKMPENSIPKEAAYQIINDELM----LDGNPRLNLASFVTTWMEPECDKLIMSSINKNYVDMDEYP   91 (502)
T ss_dssp             CTTTSSGGGSCCCSSSCCSSCCCHHHHHHHHHHHGG----GSCCGGGBTTCCSCCCCCHHHHHHHHHTTTCBTTCTTTCH
T ss_pred             ccccchhhhhhccCCCCCCCCCCHHHHHHHHHHHhc----cCCCCCceeccccCCCCCHHHHHHHHHHhccCCCChhcCh
Confidence            33456788888876 899999999999999998664    2478996543333333444689999999999998888776


Q ss_pred             C
Q psy3051         110 G  110 (111)
Q Consensus       110 g  110 (111)
                      +
T Consensus        92 ~   92 (502)
T 3hbx_A           92 V   92 (502)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=97.10  E-value=0.00054  Score=50.80  Aligned_cols=68  Identities=7%  Similarity=0.030  Sum_probs=48.9

Q ss_pred             CCCCCCCCcCHHHHHHHHHHhhcC-CCCccCCccccccccCCC-CHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          43 PGEMPEEGEDWRHIMRDMNTVIMP-GITHWQSPHFHAFYPSAS-SFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        43 ~~~~p~~g~~~~~~l~~~~~~v~~-~~~~~~hPrf~~~v~~~~-~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ...+|++|.+.+++++++.+.... ..+.+.||+|+|++..++ ....++.+.+....+.+...|..+||
T Consensus        35 ~~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (497)
T 3mc6_A           35 FPQLPSNGIPQDDVIEELNKLNDLIPHTQWKEGKVSGAVYHGGDDLIHLQTIAYEKYCVANQLHPDVFPA  104 (497)
T ss_dssp             CSSCCSSCCCHHHHHHHHHHHHHSSCCCCGGGTCBSSSCSCCCHHHHHHHHHHHHHTSSCBTTCTTTCHH
T ss_pred             ccCCCCCCCCHHHHHHHHHHHhhhcCCCCCCCCCEeeecCCCchHHHHHHHHHHHHHhhcCCCCcccChH
Confidence            357999999999999999986542 578899999999976654 33344455554444446677777664

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=97.07  E-value=0.00016  Score=54.13  Aligned_cols=67  Identities=9%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             CCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccC-CCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          44 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPS-ASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        44 ~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~-~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ..+|++|.+.+++++++.+.+.++.+.+.||+|+|++.. .+.....+.+.+....|.+...|..+|+
T Consensus        69 ~~lp~~g~~~~~i~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~  136 (514)
T 3mad_A           69 ARLPRAGLPRAEILAEIAAMGAAESPAWRDGYASGAVYHGDEHHIAFLNEVYALQSQSNPLHPDLWPS  136 (514)
T ss_dssp             SSCCSSCCCHHHHHHHHHHHHHHHHHHHHTTCBSSSCSCCCHHHHHHHHHHHHHHTTCCTTCTTTCHH
T ss_pred             CCCCCCCCCHHHHHHHHHHHHhccCCCCCCCceEEEecCCCCCHHHHHHHHHHHHhhcCCcccccChH
Confidence            568999999999999999887888899999999999865 4667788999999999988887776654

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=96.83  E-value=0.00016  Score=54.12  Aligned_cols=58  Identities=14%  Similarity=0.128  Sum_probs=34.9

Q ss_pred             CCCCCCCcCHHHHHHHHHHhhcC---------------CCCc--cCCccccccccCCCCHHHHHHHHHHhhhCcCCcccc
Q psy3051          44 GEMPEEGEDWRHIMRDMNTVIMP---------------GITH--WQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWS  106 (111)
Q Consensus        44 ~~~p~~g~~~~~~l~~~~~~v~~---------------~~~~--~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~  106 (111)
                      ..+|++|.+-++|..++.+.-.-               +.+-  ..-||||||++|+    +++||||++  |  . .|.
T Consensus        21 ~~~p~~g~~~~~i~~~l~~~~~~d~~~~~~~~~~geregrv~~~~~~~r~~g~~hg~----~~~~d~l~~--~--~-~~~   91 (450)
T 3bc8_A           21 GKCPEDGWDESTLELFLHELAVMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI----GRSGDISAV--Q--P-KAA   91 (450)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHHHTBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB----CC---------C--C-SBH
T ss_pred             ccCCccCCCHHHHHHHHHHHhhCCCCccccccccCcccceEecccccCCccceecch----hHHHHHHHh--C--c-ccc
Confidence            46899999999988888863221               1111  2258999999998    778899988  3  2 566


Q ss_pred             cCCC
Q psy3051         107 PHVG  110 (111)
Q Consensus       107 ~spg  110 (111)
                      .+|+
T Consensus        92 ~~~~   95 (450)
T 3bc8_A           92 GSSL   95 (450)
T ss_dssp             HHHH
T ss_pred             CCcH
Confidence            6553

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=95.34  E-value=0.03  Score=39.39  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=45.3

Q ss_pred             CCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcc
Q psy3051          45 EMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFT  104 (111)
Q Consensus        45 ~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~  104 (111)
                      .+|+.|.+.+++++++.+ +.+....+.+|+|+|+..+++.+.  +.+.+...+....+.
T Consensus         4 ~lp~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~--v~~a~~~~~~~~~~~   60 (397)
T 3f9t_A            4 NMQEKGVSEKEILEELKK-YRSLDLKYEDGNIFGSMCSNVLPI--TRKIVDIFLETNLGD   60 (397)
T ss_dssp             SCCSSCCCHHHHHHHHHH-HHTTSCCGGGTCBCSCSCCCCCTH--HHHHHHHHTTCCTTS
T ss_pred             cCCCCCCCHHHHHHHHHH-hhccCCCCCCCCeEEEecCCCcHH--HHHHHHHHHhhcCCC
Confidence            479999999999999997 568888889999999998887764  456666666654433

>3ip4_C Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase; multi protein complex, ligase, ATP-binding, nucleotide-bindi protein biosynthesis; 1.90A {Staphylococcus aureus subsp} SCOP: a.137.12.1 PDB: 2df4_C 2dqn_C* 2g5h_C 2g5i_C* 2f2a_C

Probab=81.75  E-value=4.1  Score=23.92  Aligned_cols=49  Identities=12%  Similarity=0.173  Sum_probs=31.7

Q ss_pred             HHHHHHHHHHhhccC---CCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHH
Q psy3051          12 AAIDFIADYHDTVRQ---RQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM   60 (111)
Q Consensus        12 ~~~~~i~~~~~~~~~---~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~   60 (111)
                      .-++.|.+|++.+..   ..|-|-..+-++...++.+.+..+..-+++|+..
T Consensus        30 ~~l~~Il~~ve~L~evDt~~VeP~~~~~~~~~~lReD~v~~~~~~e~~L~nA   81 (100)
T 3ip4_C           30 NTLESILDFAKQNDSADTEGVEPTYHVLDLQNVLREDKAIKGIPQELALKNA   81 (100)
T ss_dssp             HHHHHHHHHHGGGGGSCCTTCCCCSCCSCCCCCCBCSCCCCCCCHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhhcCCCCCCcccccccccCCCCCCCCCCCCCHHHHHHcC
Confidence            335667777777653   3344444555566778888888888877766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	111
d1js3a_	476	c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa)	3e-37

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]} Length = 476

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  128 bits (322), Expect = 3e-37
 Identities = 47/105 (44%), Positives = 75/105 (71%)

Query: 1   MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDM 60
           MN+ +FR  GK  +D++ADY + +  RQV P VQPGYL  L+P   P+E + +  I++D+
Sbjct: 1   MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDV 60

Query: 61  NTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW 105
             +IMPG+THW SP+F A++P+ASS+P++L ++L   +G + F+W
Sbjct: 61  EKIIMPGVTHWHSPYFFAYFPTASSYPAMLADMLCGAIGCIGFSW 105

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	111
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.95
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	95.15
d2v9va2	73	C-terminal fragment of elongation factor SelB {Moo	85.82
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	83.32

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.95  E-value=3.3e-28  Score=181.30  Aligned_cols=110  Identities=43%  Similarity=0.976  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccc
Q psy3051           1 MNSEEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFY   80 (111)
Q Consensus         1 ~~~~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v   80 (111)
                      ||+|+||+.+++++|++.+|+++++++||.+...|+++++.++..+|++|.+.+++++++.+.+++++++++|||||||+
T Consensus         1 m~~~~fr~~~~~~~d~i~d~~~~~~~~~v~~~~~p~~l~~~~~~~~P~~g~~~~~~l~~~~~~i~~~~~~~~~P~f~~~~   80 (476)
T d1js3a_           1 MNASDFRRRGKEMVDYMADYLEGIEGRQVYPDVQPGYLRPLIPATAPQEPDTFEDILQDVEKIIMPGVTHWHSPYFFAYF   80 (476)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTGGGSCSSCCCCTTCSGGGSCSSCCSSCCCHHHHHHHHHHTTGGGCCCTTSTTBCSSS
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCChHHHHHhcCcccCcCCCCHHHHHHHHHHHHhCCCCCCCCCCeeEeC
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          81 PSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        81 ~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      ++++++++++||++++++|+|+.+|+.||+
T Consensus        81 ~~~~~~~~~l~~~~~~~~n~n~~~~~~sp~  110 (476)
T d1js3a_          81 PTASSYPAMLADMLCGAIGCIGFSWAASPA  110 (476)
T ss_dssp             CCCCCHHHHHHHHHHHHHCCCCSSGGGCHH
T ss_pred             CCCCCHHHHHHHHHHHhhcccccchhhhhh
Confidence            999999999999999999999999999985

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=95.15  E-value=0.023  Score=40.48  Aligned_cols=61  Identities=8%  Similarity=0.022  Sum_probs=46.3

Q ss_pred             CCCCCCcCHHHHHHHHHHhh-cCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCcccccCCC
Q psy3051          45 EMPEEGEDWRHIMRDMNTVI-MPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTWSPHVG  110 (111)
Q Consensus        45 ~~p~~g~~~~~~l~~~~~~v-~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~~~spg  110 (111)
                      .+|++|.+.+++.+.+.+.+ +++.-+.   ++..|+.....+  .++++++.++|+|+..|+.+|+
T Consensus        29 ~~p~~~~~~~~~~~~i~d~l~~dg~~~~---n~asf~~t~~~~--~~~~l~~~~~~~N~~~~~~~P~   90 (450)
T d1pmma_          29 RFPLHEMRDDVAFQIINDELYLDGNARQ---NLATFCQTWDDE--NVHKLMDLSINKNWIDKEEYPQ   90 (450)
T ss_dssp             SCCCSCCCHHHHHHHHHHHGGGSCCGGG---BCSCCSCCCCCH--HHHHHHHHTTTCBTTCTTTSHH
T ss_pred             cCCccCCCHHHHHHHHHHHhccCCCccc---cccccccCCCCH--HHHHHHHHHHhcCCCCcccCcc
Confidence            58999999999999998764 3433233   355555555454  4789999999999999999885

>d2v9va2 a.4.5.35 (A:438-510) C-terminal fragment of elongation factor SelB {Moorella thermoacetica [TaxId: 1525]}

class: All alpha proteins
fold: DNA/RNA-binding 3-helical bundle
superfamily: "Winged helix" DNA-binding domain
family: C-terminal fragment of elongation factor SelB
domain: C-terminal fragment of elongation factor SelB
species: Moorella thermoacetica [TaxId: 1525]

Probab=85.82  E-value=0.8  Score=23.89  Aligned_cols=54  Identities=13%  Similarity=0.320  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCCCCCCChhHHhhcCCCCCCCCCcCHHHHHHHHHH
Q psy3051           4 EEFREFGKAAIDFIADYHDTVRQRQVLPSVQPGYLASLVPGEMPEEGEDWRHIMRDMNT   62 (111)
Q Consensus         4 ~~~~~~~~~~~~~i~~~~~~~~~~pv~~~~~p~~l~~~~~~~~p~~g~~~~~~l~~~~~   62 (111)
                      |.++++-+++++.+.+|.+.   .|-.++...++|++.+...++  ..-++.+|+.+.+
T Consensus         1 e~~~~l~~~i~~~L~~fH~~---~P~~~G~~keeLr~~l~~~~~--~~~f~~lL~~l~~   54 (73)
T d2v9va2           1 ERYQAWWQAVTRALEEFHSR---YPLRPGLAREELRSRYFSRLP--ARVYQALLEEWSR   54 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH---CTTSSCEEHHHHHHHHCTTSC--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHH---CccccCCCHHHHHHHhcccCC--HHHHHHHHHHHHH
Confidence            46788888999999999887   355677888999987644443  3345666666654

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.32  E-value=0.31  Score=33.58  Aligned_cols=57  Identities=14%  Similarity=0.085  Sum_probs=39.3

Q ss_pred             CCCCCCCcCHHHHHHHHHHhhcCCCCccCCccccccccCCCCHHHHHHHHHHhhhCcCCccc
Q psy3051          44 GEMPEEGEDWRHIMRDMNTVIMPGITHWQSPHFHAFYPSASSFPSILGELLSTGLGVLSFTW  105 (111)
Q Consensus        44 ~~~p~~g~~~~~~l~~~~~~v~~~~~~~~hPrf~~~v~~~~~~~s~lad~l~sa~N~~~~~~  105 (111)
                      ..+|++|.+.+++++.+.+.. .    ..+++|.+++..+..+..+.++++..+.+.+..++
T Consensus        17 ~~lP~~G~~~~~i~~~l~~~~-~----~d~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~   73 (445)
T d3bc8a1          17 GKCPEDGWDESTLELFLHELA-V----MDSNNFLGNCGVGEREGRVASALVARRHYRFIHGI   73 (445)
T ss_dssp             CCCCSSCCCHHHHHHHHHHHH-H----TBGGGCTTCCCCSSCCCCCSCHHHHHHTTTCCSCB
T ss_pred             CCCCcCCCCHHHHHHHHHHHH-h----ccCCcccCcccccccCccccHHHHHHHHHhhcccc
Confidence            468999999899888888632 1    24556677766666655666777887777665544