Psyllid ID: psy3055

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQGEHLNDRSIST
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccccEEEccccccccccccccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccccHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHccccccccHHHHHHHccHHHHHHHHHHHHcccccEEccEEEEEEEccccccccEEccccEEEEccccccccccccccccccccHHHHHHHHHcccHHHHHHHHHHHHHHcccccccEEEEEEEccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
mgrnnkhgpisklsiderTVLTIGEIIQELLVAHKECKDVNLNQMKTRisskygldtsprLVDIIAAVPAEAKKILlpklkakpirtaSGIAVVAVmckphrcphinmtgnicvycpggpdsdfeystqsytgyeptsmRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNlamnwmaptcpslWFQINLLSRTQWkkcnqgehlndrsist
Flexible Loop (DISEMBL)
mgrnnkhgpisklsidertVLTIGEIIQELLVAHKECKDVNLNQMKTRisskygldtspRLVDIIAAVPAEAKkillpklkakpirTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKkcnqgehlndrsist
Low Complexity Region (SEG)
MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVpaeakkillpklkakpiRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQGEHLNDRSIST
Disordered region (IsUnstruct)
**************IDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKC*************
Disordered Region (DISOPRED)
*******************VLTIGEIIQELLV*********LNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW****************
Disordered Region (DISEMBL)
*********ISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQG**********
Disordered Region (DISPRO)
*************SIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQGEHLN******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWKKCNQGEHLNDRSIST
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
Q9VQZ6	552	Probable elongator comple	yes	N/A	0.757	0.300	0.814	9e-77
Q6NVL5	549	Elongator complex protein	yes	N/A	0.780	0.311	0.732	5e-72
Q5ZHS1	546	Elongator complex protein	yes	N/A	0.789	0.316	0.715	1e-70
Q5HZM6	549	Elongator complex protein	N/A	N/A	0.757	0.302	0.730	3e-70
Q2KJ61	547	Elongator complex protein	yes	N/A	0.757	0.303	0.724	3e-70
Q9CZX0	547	Elongator complex protein	yes	N/A	0.757	0.303	0.724	4e-70
Q5RIC0	548	Elongator complex protein	yes	N/A	0.799	0.319	0.703	5e-70
Q9H9T3	547	Elongator complex protein	yes	N/A	0.757	0.303	0.718	5e-70
Q60LW7	548	Probable elongator comple	N/A	N/A	0.716	0.286	0.721	2e-63
Q23651	547	Probable elongator comple	yes	N/A	0.716	0.287	0.721	7e-63

>sp|Q9VQZ6|ELP3_DROME Probable elongator complex protein 3 OS=Drosophila melanogaster GN=Elp3 PE=2 SV=1

 Score =  286 bits (731), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 151/167 (90%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS  ER VL IGEIIQELL AH+  KDVNLN+MK+ ++SKYGLD+SPRLVDIIAAVP +A
Sbjct: 11  LSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIR+RY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.
Drosophila melanogaster (taxid: 7227)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 4EC: 8

>sp|Q6NVL5|ELP3_XENTR Elongator complex protein 3 OS=Xenopus tropicalis GN=elp3 PE=2 SV=1

 Score =  270 bits (691), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 126/172 (73%), Positives = 148/172 (86%), Gaps = 1/172 (0%)

Query: 8   GPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAA 67
           GP  K S  E  ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAA
Sbjct: 6   GPRGKQSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAA 65

Query: 68  VPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS 127
           VP + +KIL+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYS
Sbjct: 66  VPPQYRKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYS 125

Query: 128 TQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           TQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 126 TQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Xenopus tropicalis (taxid: 8364)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q5ZHS1|ELP3_CHICK Elongator complex protein 3 OS=Gallus gallus GN=ELP3 PE=2 SV=1

 Score =  266 bits (679), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/179 (71%), Positives = 149/179 (83%), Gaps = 6/179 (3%)

Query: 1   MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPR 60
           MG+  K      LS  E  ++TI +II++L+ AH++ KDVNLN++KT+ S+KYGL   PR
Sbjct: 1   MGQKRK-----DLSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPR 55

Query: 61  LVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGP 120
           LVDIIAAVP + +K L+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGP
Sbjct: 56  LVDIIAAVPPQHRKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGP 115

Query: 121 DSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           DSDFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 116 DSDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 173

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Gallus gallus (taxid: 9031)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q5HZM6|ELP3_XENLA Elongator complex protein 3 OS=Xenopus laevis GN=elp3 PE=2 SV=1

 Score =  265 bits (676), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 122/167 (73%), Positives = 146/167 (87%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           +S  E  ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAAVP + 
Sbjct: 11  MSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQY 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           +KIL+PKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  RKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+PY+QTRHRVEQL+QLGH+VDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHNVDK-VEFIVMGGTF 176

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Xenopus laevis (taxid: 8355)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q2KJ61|ELP3_BOVIN Elongator complex protein 3 OS=Bos taurus GN=ELP3 PE=2 SV=2

 Score =  264 bits (675), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS  +  +LTIG++I++L+ AH++ KD++LN++KTR ++KYGL   PRLVDIIAAVP + 
Sbjct: 9   LSPAQLMMLTIGDVIKQLIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLVDIIAAVPPQY 68

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           +K+L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69  RKVLVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+PY+QTRHR+EQL+QLGHSVDK  E ++  G  
Sbjct: 129 GYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. May also have a methyltransferase activity.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9CZX0|ELP3_MOUSE Elongator complex protein 3 OS=Mus musculus GN=Elp3 PE=2 SV=1

 Score =  264 bits (674), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 121/167 (72%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS  E  +LTIG++I++L+ AH++ KDV+LN+MKT+ ++KYGL + PRLVDIIAAVP   
Sbjct: 9   LSPAELMMLTIGDVIKQLVEAHEQGKDVDLNKMKTKTAAKYGLASQPRLVDIIAAVPPHY 68

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           +KIL+PKLKAKP+RTASGIAVVAVMCKPHRCPHI+ TGNIC+YCPGGPDSDFEYSTQSYT
Sbjct: 69  RKILIPKLKAKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYT 128

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHR+EQL+QLGHSVDK  E ++  G  
Sbjct: 129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. May also have a methyltransferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q5RIC0|ELP3_DANRE Elongator complex protein 3 OS=Danio rerio GN=elp3 PE=2 SV=3

 Score =  263 bits (673), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 126/179 (70%), Positives = 149/179 (83%), Gaps = 4/179 (2%)

Query: 1   MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPR 60
           MG+  K    S LS  E  ++TI ++I++L+ AH+E KD+NLN++KT+ S+KYGL   PR
Sbjct: 1   MGKPKKK---SDLSRAELMMMTIADVIKQLVEAHEEGKDINLNKVKTKTSAKYGLSAQPR 57

Query: 61  LVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGP 120
           LVDIIAAVP   ++ L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGP
Sbjct: 58  LVDIIAAVPPHYRRALVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGP 117

Query: 121 DSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           DSDFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 118 DSDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 175

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q9H9T3|ELP3_HUMAN Elongator complex protein 3 OS=Homo sapiens GN=ELP3 PE=1 SV=2

 Score =  263 bits (673), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 120/167 (71%), Positives = 147/167 (88%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS  E  +LTIG++I++L+ AH++ KD++LN++KT+ ++KYGL   PRLVDIIAAVP + 
Sbjct: 9   LSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTKTAAKYGLSAQPRLVDIIAAVPPQY 68

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           +K+L+PKLKAKPIRTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 69  RKVLMPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHR+EQL+QLGHSVDK  E ++  G  
Sbjct: 129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDK-VEFIVMGGTF 174

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling and is involved in acetylation of histones H3 and probably H4. May also have a methyltransferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q60LW7|ELP3_CAEBR Probable elongator complex protein 3 OS=Caenorhabditis briggsae GN=elpc-3 PE=3 SV=1

 Score =  241 bits (615), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 22  TIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLK 81
           T+ EI++ L+ AH + KDVNLN++K  ++ K GL   P+LVDIIA VPA+ K  LLPKLK
Sbjct: 14  TVNEIVKLLIEAHNQKKDVNLNRLKCIVAQKNGLSFQPKLVDIIAGVPADYKDTLLPKLK 73

Query: 82  AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
           AKP+RTASGIAVVAVM KPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 74  AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133

Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           IRARYNPY+QTR R+ QL QLGHSVDK  E ++  G  
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTF 170

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Caenorhabditis briggsae (taxid: 6238)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

>sp|Q23651|ELP3_CAEEL Probable elongator complex protein 3 OS=Caenorhabditis elegans GN=elpc-3 PE=3 SV=2

 Score =  240 bits (612), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 114/158 (72%), Positives = 130/158 (82%), Gaps = 1/158 (0%)

Query: 22  TIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLK 81
           TI EI++ L+ AH + KDVNLN++K  ++ K GL   P+LVDIIA VP++ K  LLPKLK
Sbjct: 14  TINEIVKLLIEAHNQKKDVNLNRLKCIVAQKNGLSFQPKLVDIIAGVPSDYKDSLLPKLK 73

Query: 82  AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 141
           AKP+RTASGIAVVAVM KPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA
Sbjct: 74  AKPVRTASGIAVVAVMSKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRA 133

Query: 142 IRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           IRARYNPY+QTR R+ QL QLGHSVDK  E ++  G  
Sbjct: 134 IRARYNPYLQTRGRLNQLMQLGHSVDK-VEFIVMGGTF 170

Catalytic histone acetyltransferase subunit of the RNA polymerase II elongator complex, which is a component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation. Elongator may play a role in chromatin remodeling. May also have a methyltransferase activity.

Caenorhabditis elegans (taxid: 6239)

EC: 2

EC: .

EC: 3

EC: .

EC: 1

EC: .

EC: 4

EC: 8

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
357607361	493	hypothetical protein KGM_05653 [Danaus p	0.771	0.342	0.823	4e-77
195159520	550	GL15175 [Drosophila persimilis] gi|19411	0.757	0.301	0.826	2e-76
125986433	550	GA13723 [Drosophila pseudoobscura pseudo	0.757	0.301	0.826	3e-76
194766229	672	GF21222 [Drosophila ananassae] gi|190617	0.757	0.247	0.832	5e-76
350402548	551	PREDICTED: probable elongator complex pr	0.753	0.299	0.819	5e-76
340711920	551	PREDICTED: probable elongator complex pr	0.753	0.299	0.819	6e-76
195388168	556	GJ20018 [Drosophila virilis] gi|19414921	0.757	0.298	0.826	6e-76
328779703	551	PREDICTED: probable elongator complex pr	0.753	0.299	0.813	9e-76
312377999	549	hypothetical protein AND_10547 [Anophele	0.757	0.302	0.814	1e-75
195471266	554	GE18291 [Drosophila yakuba] gi|194174027	0.757	0.299	0.820	1e-75

>gi|357607361|gb|EHJ65472.1| hypothetical protein KGM_05653 [Danaus plexippus]

 Score =  293 bits (750), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 140/170 (82%), Positives = 153/170 (90%), Gaps = 1/170 (0%)

Query: 10  ISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVP 69
           +  LS +E+ V+ I EIIQELL+AH++ KDVNLN+MKTRISSKYGL TSPRLVDIIAAVP
Sbjct: 7   LPNLSKEEKMVIVISEIIQELLIAHRQGKDVNLNKMKTRISSKYGLGTSPRLVDIIAAVP 66

Query: 70  AEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQ 129
           A+AK ILLPKLKAKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQ
Sbjct: 67  ADAKSILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQ 126

Query: 130 SYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           SYTGYEPTSMRAIRARYNPY+QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 127 SYTGYEPTSMRAIRARYNPYLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 175

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195159520|ref|XP_002020626.1| GL15175 [Drosophila persimilis] gi|194117576|gb|EDW39619.1| GL15175 [Drosophila persimilis]

 Score =  290 bits (743), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS +ER VL +GEIIQELL AH+  KDVNLN+MK+ ISSKYGLD+SPRLVDIIAAVP +A
Sbjct: 11  LSREERQVLVVGEIIQELLAAHEAKKDVNLNRMKSLISSKYGLDSSPRLVDIIAAVPQDA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYDPFVQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|125986433|ref|XP_001356980.1| GA13723 [Drosophila pseudoobscura pseudoobscura] gi|54645306|gb|EAL34046.1| GA13723 [Drosophila pseudoobscura pseudoobscura]

 Score =  290 bits (742), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS +ER VL +GEIIQELL AH+  KDVNLN+MK+ ISSKYGLD+SPRLVDIIAAVP +A
Sbjct: 11  LSREERQVLVVGEIIQELLAAHEAKKDVNLNRMKSLISSKYGLDSSPRLVDIIAAVPQDA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYDPFVQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766229|ref|XP_001965227.1| GF21222 [Drosophila ananassae] gi|190617837|gb|EDV33361.1| GF21222 [Drosophila ananassae]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 139/167 (83%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS +ER VL +GEIIQELL AH+  KDVNLN+MK+ ISSKYGLD+SPRLVDIIAAVP EA
Sbjct: 11  LSREERQVLVVGEIIQELLRAHEAKKDVNLNRMKSLISSKYGLDSSPRLVDIIAAVPQEA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYDPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350402548|ref|XP_003486525.1| PREDICTED: probable elongator complex protein 3-like [Bombus impatiens]

 Score =  289 bits (740), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 14  SIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAK 73
           S +ER V+TIGEIIQELL AH E +DV+LN++KTRI+SKYGLD+SPRLVDIIAAVP +A+
Sbjct: 11  SKEERMVITIGEIIQELLKAHDENRDVDLNKLKTRIASKYGLDSSPRLVDIIAAVPVDAR 70

Query: 74  KILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 133
            IL+PKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG
Sbjct: 71  NILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 130

Query: 134 YEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           YEPTSMRAIRARYNP++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 YEPTSMRAIRARYNPFLQTRHRVEQLKQLGHSVDK-IEFIVMGGTF 175

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340711920|ref|XP_003394514.1| PREDICTED: probable elongator complex protein 3-like [Bombus terrestris]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 136/166 (81%), Positives = 152/166 (91%), Gaps = 1/166 (0%)

Query: 14  SIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAK 73
           S +ER V+TIGEIIQELL AH E +DV+LN++KTRI+SKYGLD+SPRLVDIIAAVP +A+
Sbjct: 11  SKEERMVITIGEIIQELLKAHDENRDVDLNKLKTRIASKYGLDSSPRLVDIIAAVPVDAR 70

Query: 74  KILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 133
            IL+PKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG
Sbjct: 71  NILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 130

Query: 134 YEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           YEPTSMRAIRARYNP++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 YEPTSMRAIRARYNPFLQTRHRVEQLKQLGHSVDK-IEFIVMGGTF 175

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195388168|ref|XP_002052755.1| GJ20018 [Drosophila virilis] gi|194149212|gb|EDW64910.1| GJ20018 [Drosophila virilis]

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 138/167 (82%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS +ER VL IGEIIQELL AH++ KDVNLN+MK+ ISSKYGLD+SPRLVDIIAAVP +A
Sbjct: 11  LSREERQVLVIGEIIQELLKAHEDKKDVNLNRMKSLISSKYGLDSSPRLVDIIAAVPQDA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYDPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328779703|ref|XP_003249694.1| PREDICTED: probable elongator complex protein 3-like [Apis mellifera]

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 135/166 (81%), Positives = 153/166 (92%), Gaps = 1/166 (0%)

Query: 14  SIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAK 73
           S +ER V+TIGEIIQELL AH+E +DV+LN++KTRI+SKYGL+TSPRLVDIIAAVP +A+
Sbjct: 11  SKEERMVMTIGEIIQELLKAHEENRDVDLNKLKTRIASKYGLETSPRLVDIIAAVPVDAR 70

Query: 74  KILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 133
            IL+PKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG
Sbjct: 71  NILIPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTG 130

Query: 134 YEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           YEPTSMRAIRARYNP++QTRHRVEQL+QLGH+VDK  E ++  G  
Sbjct: 131 YEPTSMRAIRARYNPFLQTRHRVEQLKQLGHNVDK-IEFIVMGGTF 175

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|312377999|gb|EFR24688.1| hypothetical protein AND_10547 [Anopheles darlingi]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 136/167 (81%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS DER ++ +GEIIQELL AH+E KDVNLN++KTRISS YGL+++PRLVDIIAAVP EA
Sbjct: 11  LSRDERMLIVVGEIIQELLKAHREGKDVNLNRLKTRISSNYGLESAPRLVDIIAAVPHEA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           K ILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KSILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIRARY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRARYHPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195471266|ref|XP_002087926.1| GE18291 [Drosophila yakuba] gi|194174027|gb|EDW87638.1| GE18291 [Drosophila yakuba]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 137/167 (82%), Positives = 152/167 (91%), Gaps = 1/167 (0%)

Query: 13  LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEA 72
           LS  ER VL IGEIIQELL AH++ KDVNLN+MK+ +SSKYGLD+SPRLVDIIAAVP +A
Sbjct: 11  LSRQERQVLVIGEIIQELLKAHEDKKDVNLNRMKSLVSSKYGLDSSPRLVDIIAAVPQDA 70

Query: 73  KKILLPKLKAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
           KKILLPKL+AKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct: 71  KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query: 133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNL 179
           GYEPTSMRAIR+RY+P++QTRHRVEQL+QLGHSVDK  E ++  G  
Sbjct: 131 GYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDK-VEFIVMGGTF 176

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
FB|FBgn0031604	552	Elp3 "Elongator complex protei	0.748	0.297	0.739	1.5e-60
UNIPROTKB|Q6NVL5	549	elp3 "Elongator complex protei	0.771	0.307	0.670	1.4e-57
UNIPROTKB|E1C2M5	548	ELP3 "Elongator complex protei	0.748	0.299	0.690	4.6e-57
UNIPROTKB|Q5ZHS1	546	ELP3 "Elongator complex protei	0.748	0.300	0.690	4.6e-57
ZFIN|ZDB-GENE-050327-35	548	elp3 "elongation protein 3 hom	0.789	0.315	0.644	5.9e-57
RGD|2324506	566	Elp3 "elongator acetyltransfer	0.748	0.289	0.678	1.6e-56
UNIPROTKB|F1PAW4	547	ELP3 "Uncharacterized protein"	0.748	0.299	0.672	2.5e-56
UNIPROTKB|Q5HZM6	549	elp3 "Elongator complex protei	0.771	0.307	0.652	3.3e-56
UNIPROTKB|Q2KJ61	547	ELP3 "Elongator complex protei	0.780	0.312	0.634	4.2e-56
MGI|MGI:1921445	547	Elp3 "elongator acetyltransfer	0.748	0.299	0.666	8.6e-56

FB|FBgn0031604 Elp3 "Elongator complex protein 3" [Drosophila melanogaster (taxid:7227)]

 Score = 620 (223.3 bits), Expect = 1.5e-60, P = 1.5e-60
 Identities = 122/165 (73%), Positives = 135/165 (81%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  ER VL IGEIIQELL AH+  KDVNLN+MK+ ++SKYGLD+SPRLVDIIAAV    
Sbjct:    11 LSRQERQVLVIGEIIQELLKAHEAKKDVNLNRMKSLVASKYGLDSSPRLVDIIAAVPQDA 70

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT
Sbjct:    71 KKILLPKLRAKPIRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 130

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIR+RY+P++QTRHRVEQL+QLGHSVDK  E ++  G
Sbjct:   131 GYEPTSMRAIRSRYDPFLQTRHRVEQLKQLGHSVDKV-EFIVMGG 174

GO:0008080 "N-acetyltransferase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS;IDA

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0045494 "photoreceptor cell maintenance" evidence=IMP

GO:0007626 "locomotory behavior" evidence=IMP

GO:0051124 "synaptic growth at neuromuscular junction" evidence=IMP

GO:0030431 "sleep" evidence=IMP

GO:0048789 "cytoskeletal matrix organization at active zone" evidence=IMP

GO:0018394 "peptidyl-lysine acetylation" evidence=IDA

GO:0045202 "synapse" evidence=IDA

GO:0016407 "acetyltransferase activity" evidence=IDA

UNIPROTKB|Q6NVL5 elp3 "Elongator complex protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 592 (213.5 bits), Expect = 1.4e-57, P = 1.4e-57
 Identities = 114/170 (67%), Positives = 133/170 (78%)

Query:     8 GPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAA 67
             GP  K S  E  ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAA
Sbjct:     6 GPRGKQSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAA 65

Query:    68 VXXXXXXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS 127
             V                 RTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYS
Sbjct:    66 VPPQYRKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYS 125

Query:   128 TQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             TQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G
Sbjct:   126 TQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKV-EFIVMGG 174

GO:0005737 "cytoplasm" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

UNIPROTKB|E1C2M5 ELP3 "Elongator complex protein 3" [Gallus gallus (taxid:9031)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 114/165 (69%), Positives = 131/165 (79%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  E  ++TI +II++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAAV    
Sbjct:     8 LSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQH 67

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYT
Sbjct:    68 RKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYT 127

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G
Sbjct:   128 GYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKV-EFIVMGG 171

GO:0008080 "N-acetyltransferase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0008023 "transcription elongation factor complex" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IEA

GO:0033588 "Elongator holoenzyme complex" evidence=IEA

UNIPROTKB|Q5ZHS1 ELP3 "Elongator complex protein 3" [Gallus gallus (taxid:9031)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 114/165 (69%), Positives = 131/165 (79%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  E  ++TI +II++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAAV    
Sbjct:     8 LSHAELMMMTIADIIKQLIEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAAVPPQH 67

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYSTQSYT
Sbjct:    68 RKALVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYSTQSYT 127

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G
Sbjct:   128 GYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKV-EFIVMGG 171

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

ZFIN|ZDB-GENE-050327-35 elp3 "elongation protein 3 homolog (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 114/177 (64%), Positives = 136/177 (76%)

Query:     1 MGRNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPR 60
             MG+  K   +S+    E  ++TI ++I++L+ AH+E KD+NLN++KT+ S+KYGL   PR
Sbjct:     1 MGKPKKKSDLSRA---ELMMMTIADVIKQLVEAHEEGKDINLNKVKTKTSAKYGLSAQPR 57

Query:    61 LVDIIAAVXXXXXXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGP 120
             LVDIIAAV                 RTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGP
Sbjct:    58 LVDIIAAVPPHYRRALVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGP 117

Query:   121 DSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             DSDFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGHSVDK  E ++  G
Sbjct:   118 DSDFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHSVDKV-EFIVMGG 173

GO:0003824 "catalytic activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0008080 "N-acetyltransferase activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0007409 "axonogenesis" evidence=IMP

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0045859 "regulation of protein kinase activity" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

RGD|2324506 Elp3 "elongator acetyltransferase complex subunit 3" [Rattus norvegicus (taxid:10116)]

 Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
 Identities = 112/165 (67%), Positives = 133/165 (80%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  E  +LTIG++I++L+ AH++ KDV+LN++KT+ +SKYGL + PRLVDIIAAV    
Sbjct:    28 LSPAELMMLTIGDVIKQLVEAHEQGKDVDLNKLKTKTASKYGLSSQPRLVDIIAAVPPHY 87

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct:    88 RKILIPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 147

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIRARY+PY+QTRHR+EQL+QLGHSVDK  E ++  G
Sbjct:   148 GYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDKV-EFIVMGG 191

GO:0003677 "DNA binding" evidence=IEA;ISO

GO:0005730 "nucleolus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA;ISO

GO:0008023 "transcription elongation factor complex" evidence=IEA;ISO

GO:0008080 "N-acetyltransferase activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=IEA;ISO

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA;ISO

GO:0030335 "positive regulation of cell migration" evidence=IEA;ISO

GO:0033588 "Elongator holoenzyme complex" evidence=IEA;ISO

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

UNIPROTKB|F1PAW4 ELP3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 111/165 (67%), Positives = 132/165 (80%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  E  +LTIG++I++L+ AH++ KD++LN++KTR ++KYGL   PRLVDIIAAV    
Sbjct:     9 LSPAELMMLTIGDVIKQLIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLVDIIAAVPPQY 68

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDSDFEYSTQSYT
Sbjct:    69 RKVLVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDSDFEYSTQSYT 128

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIRARY+PY+QTRHR+EQL+QLGHSVDK  E ++  G
Sbjct:   129 GYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDKV-EFIVMGG 172

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0008080 "N-acetyltransferase activity" evidence=IEA

UNIPROTKB|Q5HZM6 elp3 "Elongator complex protein 3" [Xenopus laevis (taxid:8355)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 111/170 (65%), Positives = 132/170 (77%)

Query:     8 GPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAA 67
             G    +S  E  ++T+ ++I++L+ AH++ KDVNLN++KT+ S+KYGL   PRLVDIIAA
Sbjct:     6 GMRGNMSQAELMMMTVADVIKQLVEAHEQGKDVNLNKLKTKTSAKYGLSAQPRLVDIIAA 65

Query:    68 VXXXXXXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYS 127
             V                 RTASGIAVVAVMCKPHRCPHIN TGNICVYCPGGPDSDFEYS
Sbjct:    66 VPPQYRKILVPKLKAKPIRTASGIAVVAVMCKPHRCPHINFTGNICVYCPGGPDSDFEYS 125

Query:   128 TQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             TQSYTGYEPTSMRAIRARY+PY+QTRHRVEQL+QLGH+VDK  E ++  G
Sbjct:   126 TQSYTGYEPTSMRAIRARYDPYLQTRHRVEQLKQLGHNVDKV-EFIVMGG 174

GO:0005737 "cytoplasm" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

UNIPROTKB|Q2KJ61 ELP3 "Elongator complex protein 3" [Bos taurus (taxid:9913)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 111/175 (63%), Positives = 135/175 (77%)

Query:     3 RNNKHGPISKLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLV 62
             R  + G +S   +    +LTIG++I++L+ AH++ KD++LN++KTR ++KYGL   PRLV
Sbjct:     2 RQKRKGDLSPAQL---MMLTIGDVIKQLIEAHEQGKDIDLNKVKTRTAAKYGLSAQPRLV 58

Query:    63 DIIAAVXXXXXXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDS 122
             DIIAAV                 RTASGIAVVAVMCKPHRCPHI+ TGNICVYCPGGPDS
Sbjct:    59 DIIAAVPPQYRKVLVPKLKAKPIRTASGIAVVAVMCKPHRCPHISFTGNICVYCPGGPDS 118

Query:   123 DFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             DFEYSTQSYTGYEPTSMRAIRARY+PY+QTRHR+EQL+QLGHSVDK  E ++  G
Sbjct:   119 DFEYSTQSYTGYEPTSMRAIRARYDPYLQTRHRIEQLKQLGHSVDKV-EFIVMGG 172

GO:0008023 "transcription elongation factor complex" evidence=ISS

GO:0030335 "positive regulation of cell migration" evidence=ISS

GO:0033588 "Elongator holoenzyme complex" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=IEA

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0003677 "DNA binding" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

MGI|MGI:1921445 Elp3 "elongator acetyltransferase complex subunit 3" [Mus musculus (taxid:10090)]

 Score = 575 (207.5 bits), Expect = 8.6e-56, P = 8.6e-56
 Identities = 110/165 (66%), Positives = 133/165 (80%)

Query:    13 LSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVXXXX 72
             LS  E  +LTIG++I++L+ AH++ KDV+LN+MKT+ ++KYGL + PRLVDIIAAV    
Sbjct:     9 LSPAELMMLTIGDVIKQLVEAHEQGKDVDLNKMKTKTAAKYGLASQPRLVDIIAAVPPHY 68

Query:    73 XXXXXXXXXXXXXRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYT 132
                          RTASGIAVVAVMCKPHRCPHI+ TGNIC+YCPGGPDSDFEYSTQSYT
Sbjct:    69 RKILIPKLKAKPVRTASGIAVVAVMCKPHRCPHISFTGNICIYCPGGPDSDFEYSTQSYT 128

Query:   133 GYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG 177
             GYEPTSMRAIRARY+P++QTRHR+EQL+QLGHSVDK  E ++  G
Sbjct:   129 GYEPTSMRAIRARYDPFLQTRHRIEQLKQLGHSVDKV-EFIVMGG 172

GO:0003824 "catalytic activity" evidence=IEA

GO:0004402 "histone acetyltransferase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005730 "nucleolus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0006368 "transcription elongation from RNA polymerase II promoter" evidence=ISO

GO:0008023 "transcription elongation factor complex" evidence=ISO

GO:0008080 "N-acetyltransferase activity" evidence=IEA

GO:0008607 "phosphorylase kinase regulator activity" evidence=ISO

GO:0016591 "DNA-directed RNA polymerase II, holoenzyme" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA

GO:0030335 "positive regulation of cell migration" evidence=IMP

GO:0033588 "Elongator holoenzyme complex" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q23651	ELP3_CAEEL	2, ., 3, ., 1, ., 4, 8	0.7215	0.7168	0.2870	yes	N/A
Q1ZXC6	ELP3_DICDI	2, ., 3, ., 1, ., 4, 8	0.6835	0.7168	0.2808	yes	N/A
Q02908	ELP3_YEAST	2, ., 3, ., 1, ., 4, 8	0.6606	0.7397	0.2908	yes	N/A
Q6NVL5	ELP3_XENTR	2, ., 3, ., 1, ., 4, 8	0.7325	0.7808	0.3114	yes	N/A
Q9CZX0	ELP3_MOUSE	2, ., 3, ., 1, ., 4, 8	0.7245	0.7579	0.3034	yes	N/A
Q7X7L3	ELP3_ORYSJ	2, ., 3, ., 1, ., 4, 8	0.6213	0.7671	0.2931	yes	N/A
Q9VQZ6	ELP3_DROME	2, ., 3, ., 1, ., 4, 8	0.8143	0.7579	0.3007	yes	N/A
Q5RIC0	ELP3_DANRE	2, ., 3, ., 1, ., 4, 8	0.7039	0.7990	0.3193	yes	N/A
Q2KJ61	ELP3_BOVIN	2, ., 3, ., 1, ., 4, 8	0.7245	0.7579	0.3034	yes	N/A
Q93ZR1	ELP3_ARATH	2, ., 3, ., 1, ., 4, 8	0.6287	0.7579	0.2938	yes	N/A
Q9H9T3	ELP3_HUMAN	2, ., 3, ., 1, ., 4, 8	0.7185	0.7579	0.3034	yes	N/A
Q5ZHS1	ELP3_CHICK	2, ., 3, ., 1, ., 4, 8	0.7150	0.7899	0.3168	yes	N/A
O14023	ELP3_SCHPO	2, ., 3, ., 1, ., 4, 8	0.6898	0.7077	0.2849	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	219
TIGR01211	522	TIGR01211, ELP3, histone acetyltransferase, ELP3 f	1e-58
COG1243	515	COG1243, ELP3, Histone acetyltransferase [Transcri	1e-54

>gnl|CDD|233314 TIGR01211, ELP3, histone acetyltransferase, ELP3 family

 Score =  192 bits (490), Expect = 1e-58
 Identities = 74/144 (51%), Positives = 92/144 (63%), Gaps = 8/144 (5%)

Query: 25  EIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKP 84
           EI+  LL      K+ +L  +K  +S KYGL   P   +I+ + P E KK L P L+ KP
Sbjct: 1   EIVDSLLSGKTRDKE-DLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKP 59

Query: 85  IRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRA 144
           +RT SG+AVVAVM  PHRCPH       C+YCPGGPDS  E S QSYTGYEP +MR  + 
Sbjct: 60  VRTISGVAVVAVMTSPHRCPHGK-----CLYCPGGPDS--ENSPQSYTGYEPAAMRGRQN 112

Query: 145 RYNPYIQTRHRVEQLQQLGHSVDK 168
            Y+PY Q   R+EQL+Q+GH VDK
Sbjct: 113 DYDPYEQVTARLEQLEQIGHPVDK 136

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases [Transcription, DNA-dependent RNA polymerase]. Length = 522

>gnl|CDD|224164 COG1243, ELP3, Histone acetyltransferase [Transcription / Chromatin structure and dynamics]

 Score =  181 bits (462), Expect = 1e-54
 Identities = 72/144 (50%), Positives = 92/144 (63%), Gaps = 12/144 (8%)

Query: 25  EIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKP 84
           EI++ELL    E K   L  +K  +S KYGL   PR  DI+ A P E +  L   L+ KP
Sbjct: 3   EIVEELLSG--EIKKKELEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKP 58

Query: 85  IRTASGIAVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRA 144
           +RT SG+AVVAVM  PH CPH       CV+CPGGPD   + S QSYTG EP ++RAI+ 
Sbjct: 59  VRTISGVAVVAVMTSPHGCPH-----GRCVFCPGGPD---KDSPQSYTGEEPAALRAIKN 110

Query: 145 RYNPYIQTRHRVEQLQQLGHSVDK 168
           RY+PY Q R R++QL+ +GH+ DK
Sbjct: 111 RYDPYEQVRARLKQLETIGHTSDK 134

Length = 515

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
KOG2535|consensus	554		100.0
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	100.0
COG1243	515	ELP3 Histone acetyltransferase [Transcription / Ch	100.0
PRK08599	377	coproporphyrinogen III oxidase; Provisional	94.23
PRK08207	488	coproporphyrinogen III oxidase; Provisional	94.14
TIGR00538	455	hemN oxygen-independent coproporphyrinogen III oxi	93.18
PRK05628	375	coproporphyrinogen III oxidase; Validated	89.64
PRK08898	394	coproporphyrinogen III oxidase; Provisional	89.24
PRK07379	400	coproporphyrinogen III oxidase; Provisional	88.68
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	88.66
PRK08446	350	coproporphyrinogen III oxidase; Provisional	87.69
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	87.68
PRK09058	449	coproporphyrinogen III oxidase; Provisional	87.53
PRK09249	453	coproporphyrinogen III oxidase; Provisional	86.53
PRK13347	453	coproporphyrinogen III oxidase; Provisional	86.29
PRK08208	430	coproporphyrinogen III oxidase; Validated	86.04
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	85.92
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	84.06
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	83.91
PRK05660	378	HemN family oxidoreductase; Provisional	83.7
PRK09057	380	coproporphyrinogen III oxidase; Provisional	83.63
PRK05904	353	coproporphyrinogen III oxidase; Provisional	82.97
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	82.19
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	82.04

>KOG2535|consensus

Probab=100.00  E-value=3.5e-82  Score=587.43  Aligned_cols=189  Identities=68%  Similarity=1.062  Sum_probs=185.7

Q ss_pred             CCChhhHHHHHHHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCc
Q psy3055          12 KLSIDERTVLTIGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGI   91 (219)
Q Consensus        12 ~~~~~e~~~~~~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGV   91 (219)
                      +.+..|.++++|.||+.+||++++.++++|||.+|.++|+||+|+..|+++|||+++|+.+++.|+|+|++|||||||||
T Consensus        15 ~~~~~e~~~~~~~ei~~elie~~~~~k~i~ln~~k~~~~~Ky~L~~~PrlvdiIa~vP~~~k~~LlpkLrAKPvRTASGi   94 (554)
T KOG2535|consen   15 SLSPRELFVLAIGEIVKELIEAHEQNKDIDLNALKTKVARKYGLSAQPRLVDIIAAVPPQYKKSLLPKLRAKPVRTASGI   94 (554)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHhCCccCchHHHHHhhCChHHHHhhhHHhccCccccccce
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeEEEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccc
Q psy3055          92 AVVAVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWE  171 (219)
Q Consensus        92 avVAVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E  171 (219)
                      ||||||||||+|||||+|||+|+||||||||||+||+|||||+||++|||||++||||+|+|+|++||+++||+|||| |
T Consensus        95 AVVAVMcKPHRCPHIa~TGNiCVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRaRYdP~~QaR~Rv~QLk~LGHsvDKV-E  173 (554)
T KOG2535|consen   95 AVVAVMCKPHRCPHIAFTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYDPYLQARGRVEQLKQLGHSVDKV-E  173 (554)
T ss_pred             EEEEEecCCCCCCceeccCCEEEECCCCCCccceeecccccCcCcchHHHHHHhcCHHHHHHHHHHHHHHhCCcccee-E
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999999 9


Q ss_pred             ceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         172 HVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       172 ~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                       +|||||||||+  |++|++.||++||+||+=.
T Consensus       174 -~i~MGGTFMsL--Pe~YRd~FI~nLHdALSGh  203 (554)
T KOG2535|consen  174 -FIVMGGTFMSL--PEEYRDYFIRNLHDALSGH  203 (554)
T ss_pred             -EEEecceeecC--hHHHHHHHHHHHHHHhcCC
Confidence             99999999999  9999999999999999743

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=100.00  E-value=6.5e-67  Score=494.00  Aligned_cols=165  Identities=47%  Similarity=0.794  Sum_probs=158.0

Q ss_pred             HHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeecCCCCCc
Q psy3055          26 IIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHRCPH  105 (219)
Q Consensus        26 ii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~P~~CPH  105 (219)
                      |++.|++. +..++.+|+++|.++||+|+|+.+|+|+|||+++|+++++.|+++|++|||||+|||||||||||||+|||
T Consensus         2 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~kp~rt~sgv~~v~vm~~p~~cph   80 (522)
T TIGR01211         2 IVDSLLSG-KTRDKEDLEDLKLEVSRKYGLSKVPSNSEILNSAPDEEKKKLEPILRKKPVRTISGVAVVAVMTSPHRCPH   80 (522)
T ss_pred             HHHHHhcC-CCCCHHHHHHHHHHHHhhcCCccCCchHHHHhhCCHHHHHHHHHHHhcCCcccccCeEEEEEecCCccCCC
Confidence            56666654 55568899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCC
Q psy3055         106 INMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMA  185 (219)
Q Consensus       106 i~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~  185 (219)
                           |+|+||||||++ | +|||||||+|||+|||++++||||.|+++||+||+++||++||| | +|||||||+++  
T Consensus        81 -----~~c~~cp~~~~~-~-~~~~sy~~~ep~~~ra~~~~~dpy~q~~~rl~~l~~~g~~~~kv-E-~i~~GGTft~l--  149 (522)
T TIGR01211        81 -----GKCLYCPGGPDS-E-NSPQSYTGYEPAAMRGRQNDYDPYEQVTARLEQLEQIGHPVDKV-E-LIIMGGTFPAR--  149 (522)
T ss_pred             -----CceEeCCCCCCc-C-CCCcccCCCCcHhHHHHHcCCCcHHHHHHHHHHHHHhCCCCceE-E-EEEECCCcccC--
Confidence                 999999999999 6 79999999999999999999999999999999999999999999 9 99999999999  


Q ss_pred             CCCcHHHHHHHHHHhhc
Q psy3055         186 PTCPSLWFQINLLSRTQ  202 (219)
Q Consensus       186 p~~Yq~~Fi~~~~~al~  202 (219)
                      |.+||+||++.+++|++
T Consensus       150 ~~~y~~~fl~~~~~a~~  166 (522)
T TIGR01211       150 DLDYQEWFIKRCLNAMN  166 (522)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            99999999999999984

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>COG1243 ELP3 Histone acetyltransferase [Transcription / Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-65  Score=482.95  Aligned_cols=164  Identities=47%  Similarity=0.787  Sum_probs=157.4

Q ss_pred             HHHHHHHHHHHhhccCcccHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeecCCC
Q psy3055          23 IGEIIQELLVAHKECKDVNLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCKPHR  102 (219)
Q Consensus        23 ~~eii~~ii~~~~~~~~~~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~P~~  102 (219)
                      |+||+.+|++. +..++. |+++|.++||||+|+.+|+++|||.++|++++  |+++|++|||||+||||||||||+||+
T Consensus         1 ~~ei~~~~~~g-~~~~~~-l~~~k~~~~r~y~l~~~p~~~dil~~~~~~~~--l~~~lr~KPvRt~sgvaVVaVmt~p~~   76 (515)
T COG1243           1 CEEIVEELLSG-EIKKKE-LEDLKLEVSRKYGLSKVPRNSDILNAAPPEER--LREILRRKPVRTISGVAVVAVMTSPHG   76 (515)
T ss_pred             ChhHHHHHHcc-chhhHH-HHHHHHHHHHHhCcccCCchhHHHHhCChHHH--HHHHHhhcCccccccceEEEEecCCCC
Confidence            68899999987 554444 99999999999999999999999999998887  999999999999999999999999999


Q ss_pred             CCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCccC
Q psy3055         103 CPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMN  182 (219)
Q Consensus       103 CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~  182 (219)
                      |||     |+|+|||||||.   +|||||||+||++|||++|+||||.|+++||+||+.+||++||| | +|||||||+|
T Consensus        77 CPH-----g~CvfCpgg~~~---~spQSytg~ep~~~R~~~~~ydpY~q~~~Rl~qL~~igh~~~Kv-E-liimGGTFta  146 (515)
T COG1243          77 CPH-----GRCVFCPGGPDK---DSPQSYTGEEPAALRAIKNRYDPYEQVRARLKQLETIGHTSDKV-E-LIIMGGTFTA  146 (515)
T ss_pred             CCC-----CeEEeCCCCCCC---CCCcccCCCCchhhhHhhccCCcHHHHHHHHHHHHHcCCCcceE-E-EEEecccccC
Confidence            999     999999999984   79999999999999999999999999999999999999999999 9 9999999999


Q ss_pred             CCCCCCcHHHHHHHHHHhhc
Q psy3055         183 WMAPTCPSLWFQINLLSRTQ  202 (219)
Q Consensus       183 ~~~p~~Yq~~Fi~~~~~al~  202 (219)
                      +  |.+||+|||+.|++|++
T Consensus       147 ~--~~~yqe~Fi~~~~~amn  164 (515)
T COG1243         147 L--SLEYQEWFLKVALKAMN  164 (515)
T ss_pred             C--CHHHHHHHHHHHHHhhh
Confidence            9  99999999999999998

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=94.23  E-value=0.084  Score=47.83  Aligned_cols=43  Identities=7%  Similarity=-0.019  Sum_probs=29.8

Q ss_pred             HHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         156 VEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       156 l~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      ++.+...|.  .++ +.+.+-|||++.+  +.+.-+.+++.+.+.+.+
T Consensus        41 i~~~~~~~~--~~i-~~i~~gGGtpt~l--~~~~l~~ll~~i~~~~~~   83 (377)
T PRK08599         41 MNTYAIRPF--DKL-KTIYIGGGTPTAL--SAEQLERLLTAIHRNLPL   83 (377)
T ss_pred             HHHhhhcCC--Cce-eEEEeCCCCcccC--CHHHHHHHHHHHHHhCCC
Confidence            444444442  456 6577889999998  888888888888776544

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=94.14  E-value=0.096  Score=50.42  Aligned_cols=121  Identities=14%  Similarity=0.354  Sum_probs=70.1

Q ss_pred             cHHHHHHHHHHHcCCCCCCCHHHHHhhCChhHHHhhhhhhhhCCcccccCceeEEEeec-CCCCCccccCCCceeeCCCC
Q psy3055          41 NLNQMKTRISSKYGLDTSPRLVDIIAAVPAEAKKILLPKLKAKPIRTASGIAVVAVMCK-PHRCPHINMTGNICVYCPGG  119 (219)
Q Consensus        41 ~L~~~k~~i~rky~L~~~P~~~dIl~a~p~e~~~~L~~~L~~KPvRT~SGVavVAVMt~-P~~CPHi~~tgg~C~yCPgg  119 (219)
                      +.+.+.+.+.+.|-++  +...+++..+-..+++.|..    .+-+   ++   ++=.+ || ||      .+|.||.  
T Consensus       123 ~~~~~~~~~~~~y~~~--~~k~~l~~~~~~~~~~~~~~----~~~~---~~---sLYihIPF-C~------~~C~YCs--  181 (488)
T PRK08207        123 SKEEIHKELKEEYLIS--EEKAKLLLEIAKRELSFLLY----RDKN---EV---SIYIGIPF-CP------TRCLYCS--  181 (488)
T ss_pred             CHHHHHHHHHHHhCCC--HHHHHHHHHHHHHHHHhhcc----CCCC---ce---EEEEecCC-CC------CcCCCCC--
Confidence            4566777788888876  66777777666666554421    2212   22   33333 54 99      6999995  


Q ss_pred             CCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCC----CccccceeecCCCccCCCCCCCcHHHHHH
Q psy3055         120 PDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSV----DKEWEHVITTGNLAMNWMAPTCPSLWFQI  195 (219)
Q Consensus       120 p~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~v----DKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~  195 (219)
                          |...|  +.+.        +...++|...  =+++++..|..+    -+| +.+.+-|||.+.+  +.+.-++++.
T Consensus       182 ----f~s~~--~~~~--------~~~~~~Y~~a--L~~EI~~~~~~~~~~~~~v-~tIyfGGGTPt~L--~~~~L~~Ll~  242 (488)
T PRK08207        182 ----FPSYP--IKGY--------KGLVEPYLEA--LHYEIEEIGKYLKEKGLKI-TTIYFGGGTPTSL--TAEELERLLE  242 (488)
T ss_pred             ----Ccccc--CCCC--------cchHHHHHHH--HHHHHHHHHhhhcccCCce-eEEEEeCCCccCC--CHHHHHHHHH
Confidence                21011  1111        1113444332  355555554433    267 6588889999999  8788777777


Q ss_pred             HHHHhh
Q psy3055         196 NLLSRT  201 (219)
Q Consensus       196 ~~~~al  201 (219)
                      .+.+..
T Consensus       243 ~i~~~f  248 (488)
T PRK08207        243 EIYENF  248 (488)
T ss_pred             HHHHhc
Confidence            776543

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase

Probab=93.18  E-value=0.15  Score=47.65  Aligned_cols=34  Identities=3%  Similarity=-0.103  Sum_probs=27.6

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      +| +.|.+.|||++.+  +.++-..++..+.+...|.
T Consensus       102 ~v-~~I~fgGGtP~~l--~~~~l~~ll~~i~~~~~~~  135 (455)
T TIGR00538       102 HV-SQLHWGGGTPTYL--SPEQISRLMKLIRENFPFN  135 (455)
T ss_pred             ce-EEEEECCCCcCCC--CHHHHHHHHHHHHHhCCCC
Confidence            57 6688999999999  8888888888887776553

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=89.64  E-value=0.57  Score=42.56  Aligned_cols=33  Identities=6%  Similarity=-0.184  Sum_probs=24.8

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      .| +.+.+-|||++.+  |.+.-..++..+.+...+
T Consensus        59 ~i-~~i~~GGGTPs~l--~~~~l~~ll~~i~~~~~~   91 (375)
T PRK05628         59 PV-STVFVGGGTPSLL--GAEGLARVLDAVRDTFGL   91 (375)
T ss_pred             ce-eEEEeCCCccccC--CHHHHHHHHHHHHHhCCC
Confidence            35 6577889999999  888888887777665443

>PRK08898 coproporphyrinogen III oxidase; Provisional

Probab=89.24  E-value=0.84  Score=42.19  Aligned_cols=34  Identities=6%  Similarity=-0.065  Sum_probs=28.1

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      ++ +.|.+-|||.+.+  |.+.-...+..+.+.+.|.
T Consensus        73 ~i-~siy~GGGTPs~L--~~~~L~~ll~~i~~~~~~~  106 (394)
T PRK08898         73 QV-HTVFIGGGTPSLL--SAAGLDRLLSDVRALLPLD  106 (394)
T ss_pred             ce-eEEEECCCCcCCC--CHHHHHHHHHHHHHhCCCC
Confidence            56 7688889999999  9888888888887777664

>PRK07379 coproporphyrinogen III oxidase; Provisional

Probab=88.68  E-value=0.54  Score=43.64  Aligned_cols=33  Identities=12%  Similarity=-0.099  Sum_probs=26.3

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      .| +.+.+-|||++.+  |.+.-+.++..+.+.+.+
T Consensus        66 ~i-~~iy~GGGTps~l--~~~~l~~ll~~i~~~~~~   98 (400)
T PRK07379         66 PL-QTVFFGGGTPSLL--SVEQLERILTTLDQRFGI   98 (400)
T ss_pred             ce-eEEEECCCccccC--CHHHHHHHHHHHHHhCCC
Confidence            46 6588889999999  888888888888776544

>cd01335 Radical_SAM Radical SAM superfamily

Probab=88.66  E-value=1.1  Score=33.93  Aligned_cols=16  Identities=19%  Similarity=0.611  Sum_probs=12.5

Q ss_pred             CCCCccccCCCceeeCCCCCCC
Q psy3055         101 HRCPHINMTGNICVYCPGGPDS  122 (219)
Q Consensus       101 ~~CPHi~~tgg~C~yCPggp~~  122 (219)
                      ..||      ..|.||+.....
T Consensus         5 ~~C~------~~C~fC~~~~~~   20 (204)
T cd01335           5 RGCN------LNCGFCSNPASK   20 (204)
T ss_pred             CccC------CcCCCCCCCCCC
Confidence            5799      589999987643

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

>PRK08446 coproporphyrinogen III oxidase; Provisional

Probab=87.69  E-value=1.3  Score=40.28  Aligned_cols=32  Identities=13%  Similarity=-0.154  Sum_probs=25.5

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQ  202 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~  202 (219)
                      +| +.|.+-|||++.+  |.++-++++..+.+.+.
T Consensus        51 ~v-~~iyfGGGTPs~l--~~~~l~~ll~~i~~~~~   82 (350)
T PRK08446         51 KI-ESVFIGGGTPSTV--SAKFYEPIFEIISPYLS   82 (350)
T ss_pred             ce-eEEEECCCccccC--CHHHHHHHHHHHHHhcC
Confidence            46 5577888999999  99999998888776643

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=87.68  E-value=1.3  Score=34.20  Aligned_cols=79  Identities=15%  Similarity=0.126  Sum_probs=48.9

Q ss_pred             EEeecCCCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCcccccee
Q psy3055          95 AVMCKPHRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVI  174 (219)
Q Consensus        95 AVMt~P~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lI  174 (219)
                      +++.--..|+|      .|.||......          |.         -...+..++..-++++...|+..-++ +.+.
T Consensus         3 ~~i~~t~~C~~------~C~yC~~~~~~----------~~---------~~~~~~e~i~~~~~~~~~~~~~~~~~-~~i~   56 (216)
T smart00729        3 ALYIITRGCPR------RCTFCSFPSAR----------GK---------LRSRYLEALVREIELLAEKGEKEILV-GTVF   56 (216)
T ss_pred             cEEEecCchhc------cCCcCCcCccc----------cc---------hhHHHHHHHHHHHHHHHhcccCCcce-eEEE
Confidence            34444568995      79999976421          11         11223456666666776666544444 4378


Q ss_pred             ecCCCccCCCCCCCcHHHHHHHHHHhh
Q psy3055         175 TTGNLAMNWMAPTCPSLWFQINLLSRT  201 (219)
Q Consensus       175 vmGGTf~~~~~p~~Yq~~Fi~~~~~al  201 (219)
                      +.||+.+..  |.++-..+++.+.+..
T Consensus        57 ~~gg~~~~~--~~~~~~~~~~~~~~~~   81 (216)
T smart00729       57 IGGGTPTLL--SPEQLEELLEAIREIL   81 (216)
T ss_pred             ECCCCCCCC--CHHHHHHHHHHHHHhC
Confidence            889999888  6655566777766553

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>PRK09058 coproporphyrinogen III oxidase; Provisional

Probab=87.53  E-value=1  Score=42.54  Aligned_cols=33  Identities=9%  Similarity=-0.101  Sum_probs=25.5

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      .+ +.|.+-|||.+.+  +.+.-...+..+.+.+.+
T Consensus       114 ~i-~~iy~GGGTPs~L--~~~~l~~ll~~i~~~~~l  146 (449)
T PRK09058        114 PI-HAVYFGGGTPTAL--SAEDLARLITALREYLPL  146 (449)
T ss_pred             ee-eEEEECCCccccC--CHHHHHHHHHHHHHhCCC
Confidence            46 7688999999999  888877777777665543

>PRK09249 coproporphyrinogen III oxidase; Provisional

Probab=86.53  E-value=1.8  Score=40.64  Aligned_cols=34  Identities=6%  Similarity=-0.111  Sum_probs=27.0

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      +| +.+.+-|||.+.+  |.+.-+.++..+-+.+.|.
T Consensus       102 ~v-~~i~~gGGtPs~l--~~~~l~~ll~~l~~~~~~~  135 (453)
T PRK09249        102 PV-SQLHWGGGTPTFL--SPEQLRRLMALLREHFNFA  135 (453)
T ss_pred             ce-EEEEECCcccccC--CHHHHHHHHHHHHHhCCCC
Confidence            46 6588999999998  8888888888887776553

>PRK13347 coproporphyrinogen III oxidase; Provisional

Probab=86.29  E-value=1.2  Score=41.88  Aligned_cols=34  Identities=6%  Similarity=-0.083  Sum_probs=26.7

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      +| +.+.+-|||++.+  |.+.-+.++..+.+...|.
T Consensus       103 ~v-~~i~fgGGTPs~l--~~~~l~~ll~~i~~~~~~~  136 (453)
T PRK13347        103 RV-SQLHWGGGTPTIL--NPDQFERLMAALRDAFDFA  136 (453)
T ss_pred             eE-EEEEEcCcccccC--CHHHHHHHHHHHHHhCCCC
Confidence            57 6588899999999  8888888888777765543

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=86.04  E-value=1.9  Score=40.31  Aligned_cols=44  Identities=7%  Similarity=-0.133  Sum_probs=29.6

Q ss_pred             HHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         156 VEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       156 l~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      ++++...+... ++ +.+.+.|||.+.+  +.+.-++++..+.+...+
T Consensus        80 i~~~~~~~~~~-~i-~~i~~GGGTPs~l--~~~~l~~Ll~~i~~~~~~  123 (430)
T PRK08208         80 AEQVAEALAPA-RF-ASFAVGGGTPTLL--NAAELEKLFDSVERVLGV  123 (430)
T ss_pred             HHHHHHHcCCC-ce-eEEEEcCCccccC--CHHHHHHHHHHHHHhCCC
Confidence            44444333332 35 4488899999988  888888888877766543

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=85.92  E-value=2.1  Score=38.74  Aligned_cols=45  Identities=11%  Similarity=0.034  Sum_probs=34.0

Q ss_pred             chHhHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055         148 PYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR  200 (219)
Q Consensus       148 Py~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a  200 (219)
                      +..|+...++++.+.|  +..    +.+.||+.+.+  +.+|-..+++.+-+.
T Consensus        71 s~eeI~e~~~~~~~~G--~~~----i~l~gG~~p~~--~~~~~~~i~~~Ik~~  115 (343)
T TIGR03551        71 SLEEIAERAAEAWKAG--ATE----VCIQGGIHPDL--DGDFYLDILRAVKEE  115 (343)
T ss_pred             CHHHHHHHHHHHHHCC--CCE----EEEEeCCCCCC--CHHHHHHHHHHHHHH
Confidence            5678999999999988  444    44559988777  777777777777665

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=84.06  E-value=1.4  Score=39.95  Aligned_cols=40  Identities=10%  Similarity=0.064  Sum_probs=27.2

Q ss_pred             HHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHhhcc
Q psy3055         159 LQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQW  203 (219)
Q Consensus       159 L~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~  203 (219)
                      +...|.  -+| +.|.+-|||.+.+  |.+.-+.++..+.+.+++
T Consensus        44 ~~~~~~--~~v-~~i~~GGGtPs~l--~~~~l~~ll~~i~~~~~~   83 (360)
T TIGR00539        44 LSQTDQ--EPL-ESIFIGGGTPNTL--SVEAFERLFESIYQHASL   83 (360)
T ss_pred             HHhcCC--Ccc-cEEEeCCCchhcC--CHHHHHHHHHHHHHhCCC
Confidence            344452  246 6578889999998  777777777766655544

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=83.91  E-value=2.5  Score=37.97  Aligned_cols=79  Identities=19%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             CCCCCccccC--CCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecC
Q psy3055         100 PHRCPHINMT--GNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTG  177 (219)
Q Consensus       100 P~~CPHi~~t--gg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmG  177 (219)
                      .+.||..+-|  .|-|+||...-+.+|. .|  |.          +..-+--.|...-++.+..    ..+. . +.+-|
T Consensus        25 g~~cpnrdg~~~~~gC~FC~~~~~~~~~-~~--~~----------~~~~~i~~qi~~~~~~~~~----~~~~-~-iyf~g   85 (302)
T TIGR01212        25 GFSCPNRDGTKGRGGCTFCNDASRPIFA-DE--YT----------QARIPIKEQIKKQMKKYKK----DKKF-I-AYFQA   85 (302)
T ss_pred             CCCCCCCCCCCCCCCcccCCCCCCcccc-cc--cc----------ccCCCHHHHHHHHHHHhhc----cCEE-E-EEEEC
Confidence            7899986643  3689999887655552 00  10          0111223344444444332    2344 4 77889


Q ss_pred             CCccCCCCCCCcHHHHHHHHHH
Q psy3055         178 NLAMNWMAPTCPSLWFQINLLS  199 (219)
Q Consensus       178 GTf~~~~~p~~Yq~~Fi~~~~~  199 (219)
                      ||.+.+  |.+.....+..+.+
T Consensus        86 gt~t~l--~~~~L~~l~~~i~~  105 (302)
T TIGR01212        86 YTNTYA--PVEVLKEMYEQALS  105 (302)
T ss_pred             CCcCCC--CHHHHHHHHHHHhC
Confidence            999988  88887777666654

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>PRK05660 HemN family oxidoreductase; Provisional

Probab=83.70  E-value=2.1  Score=39.38  Aligned_cols=34  Identities=6%  Similarity=0.047  Sum_probs=27.4

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      +| +.|.+-|||.+.+  |.+.-.+++..+.+.+.+.
T Consensus        58 ~v-~ti~~GGGtPs~l--~~~~l~~ll~~l~~~~~~~   91 (378)
T PRK05660         58 EV-HSIFIGGGTPSLF--SAEAIQRLLDGVRARLPFA   91 (378)
T ss_pred             ce-eEEEeCCCccccC--CHHHHHHHHHHHHHhCCCC
Confidence            56 6688999999999  8888888888877766664

>PRK09057 coproporphyrinogen III oxidase; Provisional

Probab=83.63  E-value=2.3  Score=39.04  Aligned_cols=34  Identities=3%  Similarity=-0.208  Sum_probs=27.4

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      ++ +.|.+-|||.+.+  |.+.-+..+..+.+.+.|.
T Consensus        55 ~i-~tiy~GGGTPs~l--~~~~L~~ll~~i~~~f~~~   88 (380)
T PRK09057         55 TL-TSIFFGGGTPSLM--QPETVAALLDAIARLWPVA   88 (380)
T ss_pred             Cc-CeEEeCCCccccC--CHHHHHHHHHHHHHhCCCC
Confidence            46 7688999999999  8888888888887766554

>PRK05904 coproporphyrinogen III oxidase; Provisional

Probab=82.97  E-value=1.6  Score=40.03  Aligned_cols=30  Identities=3%  Similarity=-0.167  Sum_probs=22.1

Q ss_pred             ccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055         168 KEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR  200 (219)
Q Consensus       168 Kv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a  200 (219)
                      ++ +.+.+-|||.+.+  |.+.-+..+..+.+.
T Consensus        56 ~~-~tiy~GGGTPs~L--~~~~l~~ll~~i~~~   85 (353)
T PRK05904         56 QF-KTIYLGGGTPNCL--NDQLLDILLSTIKPY   85 (353)
T ss_pred             Ce-EEEEECCCccccC--CHHHHHHHHHHHHHh
Confidence            35 6688899999999  877766666655544

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=82.19  E-value=12  Score=36.45  Aligned_cols=68  Identities=22%  Similarity=0.274  Sum_probs=41.4

Q ss_pred             CCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHHHhcCCCCCccccceeecCCCcc
Q psy3055         102 RCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQLQQLGHSVDKEWEHVITTGNLAM  181 (219)
Q Consensus       102 ~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~  181 (219)
                      -|+      ++|.||.-..++.   ....|              .=+-.++...++.+.+.||.  -+   +||.|..-.
T Consensus        93 ~C~------n~C~YCgfs~~n~---~i~r~--------------~Ls~EEI~~ea~~~~~~G~~--~i---~LvsGe~p~  144 (469)
T PRK09613         93 YCV------NNCVYCGFRRSNK---EIKRK--------------KLTQEEIREEVKALEDMGHK--RL---ALVAGEDPP  144 (469)
T ss_pred             CCC------CCCccCCCccCCC---CCCce--------------ECCHHHHHHHHHHHHHCCCC--EE---EEEeCCCCC
Confidence            599      9999998543221   01111              12556888889999999974  22   455444335


Q ss_pred             CCCCCCCcHHHHHHHHHH
Q psy3055         182 NWMAPTCPSLWFQINLLS  199 (219)
Q Consensus       182 ~~~~p~~Yq~~Fi~~~~~  199 (219)
                      ..  +.+|-.+-|+.+++
T Consensus       145 ~~--~~eyi~e~i~~I~~  160 (469)
T PRK09613        145 NC--DIEYILESIKTIYS  160 (469)
T ss_pred             CC--CHHHHHHHHHHHHH
Confidence            55  66666666666554

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=82.04  E-value=0.54  Score=34.85  Aligned_cols=54  Identities=15%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             CCCCccccCCCceeeCCCCCCCCCCccccccCCCchhhHhHHHhcCCchHhHHHHHHHH-HhcCCCCCccccceeecCCC
Q psy3055         101 HRCPHINMTGNICVYCPGGPDSDFEYSTQSYTGYEPTSMRAIRARYNPYIQTRHRVEQL-QQLGHSVDKEWEHVITTGNL  179 (219)
Q Consensus       101 ~~CPHi~~tgg~C~yCPggp~~~F~~spqSYtg~EPa~~RA~r~~yDPy~Q~~~Rl~qL-~~~GH~vDKv~E~lIvmGGT  179 (219)
                      -.||      ..|.||+....... ..+                ..-+-.|+...++.+ ...|     + +.+++.||.
T Consensus         5 ~~C~------~~C~fC~~~~~~~~-~~~----------------~~~~~e~i~~~~~~~~~~~~-----~-~~i~~~~ge   55 (166)
T PF04055_consen    5 RGCN------LNCSFCYYPRSRRK-NKP----------------REMSPEEILEEIKELKQDKG-----V-KEIFFGGGE   55 (166)
T ss_dssp             SEES------S--TTTSTTTTCCT-CGC----------------EECHHHHHHHHHHHHHHHTT-----H-EEEEEESST
T ss_pred             cCcC------ccCCCCCCCccCCC-ccc----------------ccCCHHHHHHHHHHHhHhcC-----C-cEEEEeecC
Confidence            3699      58999998763100 111                122345777788888 4555     2 327778888


Q ss_pred             ccCC
Q psy3055         180 AMNW  183 (219)
Q Consensus       180 f~~~  183 (219)
                      ++..
T Consensus        56 p~~~   59 (166)
T PF04055_consen   56 PTLH   59 (166)
T ss_dssp             GGGS
T ss_pred             CCcc
Confidence            8887

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	81.21

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=81.21  E-value=1.3  Score=39.87  Aligned_cols=46  Identities=7%  Similarity=-0.077  Sum_probs=28.8

Q ss_pred             hHHHHHHHHHhcCCCCCccccceeecCCCccCCCCCCCcHHHHHHHHHHh
Q psy3055         151 QTRHRVEQLQQLGHSVDKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSR  200 (219)
Q Consensus       151 Q~~~Rl~qL~~~GH~vDKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~a  200 (219)
                      .+..-++.+.+.+.. -++ ..+.+-|||.+.+  |.++-..++..+.+.
T Consensus        88 ~l~~Ei~~~~~~~~~-~~i-~~i~fgGGtpt~l--~~~~l~~ll~~i~~~  133 (457)
T 1olt_A           88 ALEQEIVHRAPLFAG-RHV-SQLHWGGGTPTYL--NKAQISRLMKLLREN  133 (457)
T ss_dssp             HHHHHHHHHGGGGTT-CCE-EEEEEEESCGGGS--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCC-Cce-EEEEEeCCCcccC--CHHHHHHHHHHHHHh
Confidence            344445555544433 245 4488889999988  777766677666654

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1olta_	441	Oxygen-independent coproporphyrinogen III oxidase	80.39

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=80.39  E-value=0.71  Score=39.68  Aligned_cols=35  Identities=9%  Similarity=-0.043  Sum_probs=24.2

Q ss_pred             CccccceeecCCCccCCCCCCCcHHHHHHHHHHhhccc
Q psy3055         167 DKEWEHVITTGNLAMNWMAPTCPSLWFQINLLSRTQWK  204 (219)
Q Consensus       167 DKv~E~lIvmGGTf~~~~~p~~Yq~~Fi~~~~~al~~~  204 (219)
                      -+| +++-+-|||.+.+  +.+--+.++..+.+...|.
T Consensus       100 ~~v-~~i~~GGGTPt~L--~~~~l~~ll~~l~~~~~~~  134 (441)
T d1olta_         100 RHV-SQLHWGGGTPTYL--NKAQISRLMKLLRENFQFN  134 (441)
T ss_dssp             CCE-EEEEEEESCGGGS--CHHHHHHHHHHHHHHSCEE
T ss_pred             Ccc-ceeEecCCCcCCC--CHHHHHHHHHHHhhhcccc
Confidence            456 6688999999999  7665555666655555553