Psyllid ID: psy3064

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60-
Protein Sequence
MNLSSEPDSPLGLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQGFGM
Secondary Structure (PSIPRED)
cccccccccccccccccccccHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHcccccccccEcccccccHHHHHEEccccccc
Coil and Loop (DISEMBL)
mnlssepdsplglngsphlpsfLQESAEDLRnkksanmtecvpvpssehVAEIVGRQGFGM
Flexible Loop (DISEMBL)
mnlssepdsplglngspHLPSFLQESAEDLRNKKSANmtecvpvpssehvaeivgrqgfgm
Low Complexity Region (SEG)
MNLSSEPDSPLGLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQGFGM
Disordered region (IsUnstruct)
*************************************************************
Disordered Region (DISOPRED)
**L*************************************CVPVPSSEHVAEIVGRQGFG*
Disordered Region (DISEMBL)
***********GLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQGFGM
Disordered Region (DISPRO)
****************PHLPSFLQESAE*******A*MTECVPVPSSE*****V*******
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNLSSEPDSPLGLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQGFGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	61	2.2.26 [Sep-21-2011]
Q86XN8	651	RNA-binding protein MEX3D	yes	N/A	0.442	0.041	0.925	1e-07
Q3UE17	643	RNA-binding protein MEX3D	no	N/A	0.442	0.041	0.925	1e-07
Q69Z36	601	RNA-binding protein MEX3B	no	N/A	0.442	0.044	0.925	1e-07
Q6ZN04	569	RNA-binding protein MEX3B	no	N/A	0.442	0.047	0.925	2e-07
Q05A36	652	RNA-binding E3 ubiquitin-	no	N/A	0.540	0.050	0.794	7e-07
Q5U5Q3	659	RNA-binding E3 ubiquitin-	no	N/A	0.540	0.050	0.794	7e-07
A1L3F4	507	RNA-binding protein MEX3B	N/A	N/A	0.426	0.051	0.923	1e-06
A1L020	520	RNA-binding protein MEX3A	no	N/A	0.491	0.057	0.8	2e-06

>sp|Q86XN8|MEX3D_HUMAN RNA-binding protein MEX3D OS=Homo sapiens GN=MEX3D PE=1 SV=3

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32  NKKSANMTECVPVPSSEHVAEIVGRQG 58
            KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 173 RKKSVNMTECVPVPSSEHVAEIVGRQG 199

RNA binding protein, may be involved in post-transcriptional regulatory mechanisms.
Homo sapiens (taxid: 9606)

>sp|Q3UE17|MEX3D_MOUSE RNA-binding protein MEX3D OS=Mus musculus GN=Mex3d PE=2 SV=2

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32  NKKSANMTECVPVPSSEHVAEIVGRQG 58
            KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 154 RKKSVNMTECVPVPSSEHVAEIVGRQG 180

RNA binding protein, may be involved in post-transcriptional regulatory mechanisms.

Mus musculus (taxid: 10090)

>sp|Q69Z36|MEX3B_MOUSE RNA-binding protein MEX3B OS=Mus musculus GN=Mex3b PE=2 SV=2

 Score = 54.7 bits (130), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32 NKKSANMTECVPVPSSEHVAEIVGRQG 58
           KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 67 RKKSVNMTECVPVPSSEHVAEIVGRQG 93

RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.

Mus musculus (taxid: 10090)

>sp|Q6ZN04|MEX3B_HUMAN RNA-binding protein MEX3B OS=Homo sapiens GN=MEX3B PE=1 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/27 (92%), Positives = 25/27 (92%)

Query: 32 NKKSANMTECVPVPSSEHVAEIVGRQG 58
           KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 60 RKKSVNMTECVPVPSSEHVAEIVGRQG 86

RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.

Homo sapiens (taxid: 9606)

>sp|Q05A36|MEX3C_MOUSE RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Mus musculus GN=Mex3c PE=2 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%), Gaps = 1/34 (2%)

Query: 25  ESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           E A  LR +KS N TECVPVPSSEHVAEIVGRQG
Sbjct: 213 EQAALLR-RKSVNTTECVPVPSSEHVAEIVGRQG 245

RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.

Mus musculus (taxid: 10090)

>sp|Q5U5Q3|MEX3C_HUMAN RNA-binding E3 ubiquitin-protein ligase MEX3C OS=Homo sapiens GN=MEX3C PE=1 SV=3

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 27/34 (79%), Positives = 28/34 (82%), Gaps = 1/34 (2%)

Query: 25  ESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           E A  LR +KS N TECVPVPSSEHVAEIVGRQG
Sbjct: 220 EQAALLR-RKSVNTTECVPVPSSEHVAEIVGRQG 252

RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.

Homo sapiens (taxid: 9606)

>sp|A1L3F4|MEX3B_XENLA RNA-binding protein MEX3B OS=Xenopus laevis GN=mex3b PE=2 SV=1

 Score = 51.6 bits (122), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/26 (92%), Positives = 24/26 (92%)

Query: 33 KKSANMTECVPVPSSEHVAEIVGRQG 58
          KKS NMTECV VPSSEHVAEIVGRQG
Sbjct: 54 KKSINMTECVQVPSSEHVAEIVGRQG 79

RNA-binding protein. May be involved in post-transcriptional regulatory mechanisms.

Xenopus laevis (taxid: 8355)

>sp|A1L020|MEX3A_HUMAN RNA-binding protein MEX3A OS=Homo sapiens GN=MEX3A PE=1 SV=1

 Score = 50.8 bits (120), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 24/30 (80%), Positives = 27/30 (90%)

Query: 29  DLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           +LR K S+N TECVPVP+SEHVAEIVGRQG
Sbjct: 123 ELRLKGSSNTTECVPVPTSEHVAEIVGRQG 152


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.309    0.128    0.366 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,670,004
Number of Sequences: 539616
Number of extensions: 745027
Number of successful extensions: 1326
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1318
Number of HSP's gapped (non-prelim): 8
length of query: 61
length of database: 191,569,459
effective HSP length: 34
effective length of query: 27
effective length of database: 173,222,515
effective search space: 4677007905
effective search space used: 4677007905
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 55 (25.8 bits)

RNA binding protein, may be involved in post-transcriptional regulatory mechanisms.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
219522040	428	mex-3 protein [Tribolium castaneum] gi|2	0.918	0.130	0.586	2e-09
270002843	410	hypothetical protein TcasGA2_TC001207 [T	0.918	0.136	0.586	2e-09
195469381	607	GE14558 [Drosophila yakuba] gi|194185717	0.934	0.093	0.606	1e-08
242017156	114	hypothetical protein Phum_PHUM418080 [Pe	0.622	0.333	0.736	3e-08
194913504	634	GG16398 [Drosophila erecta] gi|190647928	0.934	0.089	0.606	4e-08
260829805	488	hypothetical protein BRAFLDRAFT_126022 [	0.491	0.061	0.9	1e-07
258676577	579	PEM-3 KH domain protein [Phallusia mammi	0.508	0.053	0.870	1e-07
322797028	100	hypothetical protein SINV_11103 [Solenop	0.737	0.45	0.666	2e-07
328719242	404	PREDICTED: RNA-binding protein MEX3B-lik	0.508	0.076	0.903	2e-07
195354415	627	GM26809 [Drosophila sechellia] gi|194128	0.639	0.062	0.775	2e-07

>gi|219522040|ref|NP_001137201.1| mex-3 protein [Tribolium castaneum] gi|218464687|emb|CAM28380.2| KH domain protein [Tribolium castaneum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 1   MNLSSEPDSPLGLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           +   SEPD+P  L  +P + S      +++R+KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 53  LTAVSEPDAPADL--APFVGSLATVGLDEVRSKKSQNMTECVPVPSSEHVAEIVGRQG 108

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270002843|gb|EEZ99290.1| hypothetical protein TcasGA2_TC001207 [Tribolium castaneum]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 2/58 (3%)

Query: 1  MNLSSEPDSPLGLNGSPHLPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
          +   SEPD+P  L  +P + S      +++R+KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 35 LTAVSEPDAPADL--APFVGSLATVGLDEVRSKKSQNMTECVPVPSSEHVAEIVGRQG 90

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195469381|ref|XP_002099616.1| GE14558 [Drosophila yakuba] gi|194185717|gb|EDW99328.1| GE14558 [Drosophila yakuba]

 Score = 63.9 bits (154), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 1   MNLSSEPDSPLGLNGSPH---LPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQ 57
           M+  S+ DS L +  +P+   LP+    S+ED R+KKS NMTECVPVPSSEHVAEIVGRQ
Sbjct: 63  MHTFSKVDSTLPIQSAPNCLLLPTAGAASSED-RSKKSQNMTECVPVPSSEHVAEIVGRQ 121

Query: 58  G 58
           G
Sbjct: 122 G 122

Source: Drosophila yakuba

Species: Drosophila yakuba

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017156|ref|XP_002429058.1| hypothetical protein Phum_PHUM418080 [Pediculus humanus corporis] gi|212513913|gb|EEB16320.1| hypothetical protein Phum_PHUM418080 [Pediculus humanus corporis]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/38 (73%), Positives = 31/38 (81%)

Query: 22 FLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQGF 59
          F     E++RNK+S NMTECVPVPSSEHVAEIVGRQG 
Sbjct: 60 FASSIIEEVRNKRSQNMTECVPVPSSEHVAEIVGRQGL 97

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194913504|ref|XP_001982712.1| GG16398 [Drosophila erecta] gi|190647928|gb|EDV45231.1| GG16398 [Drosophila erecta]

 Score = 62.4 bits (150), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 45/61 (73%), Gaps = 4/61 (6%)

Query: 1   MNLSSEPDSPLGLNGSPH---LPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQ 57
           M+  S+ DS L +  +P+   LP+    S+ED R+KKS NMTECVPVPSSEHVAEIVGRQ
Sbjct: 90  MHSFSKADSTLPIPSAPNCLLLPTAGAVSSED-RSKKSQNMTECVPVPSSEHVAEIVGRQ 148

Query: 58  G 58
           G
Sbjct: 149 G 149

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|260829805|ref|XP_002609852.1| hypothetical protein BRAFLDRAFT_126022 [Branchiostoma floridae] gi|229295214|gb|EEN65862.1| hypothetical protein BRAFLDRAFT_126022 [Branchiostoma floridae]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/30 (90%), Positives = 29/30 (96%)

Query: 29 DLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
          D RN+KS+NMTECVPVPSSEHVAEIVGRQG
Sbjct: 58 DARNRKSSNMTECVPVPSSEHVAEIVGRQG 87

Source: Branchiostoma floridae

Species: Branchiostoma floridae

Genus: Branchiostoma

Family: Branchiostomidae

Phylum: Chordata

Superkingdom: Eukaryota

>gi|258676577|gb|ACV87296.1| PEM-3 KH domain protein [Phallusia mammillata]

 Score = 60.5 bits (145), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/31 (87%), Positives = 29/31 (93%)

Query: 28 EDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
          E ++NKKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 54 EAMKNKKSQNMTECVPVPSSEHVAEIVGRQG 84

Source: Phallusia mammillata

Species: Phallusia mammillata

Genus: Phallusia

Family: Ascidiidae

Order: Enterogona

Class: Ascidiacea

Phylum: Chordata

Superkingdom: Eukaryota

>gi|322797028|gb|EFZ19342.1| hypothetical protein SINV_11103 [Solenopsis invicta]

 Score = 60.1 bits (144), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/48 (66%), Positives = 37/48 (77%), Gaps = 3/48 (6%)

Query: 14  NGSPHLPSFLQESA---EDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           NG+ + P  LQ +    E+ R+KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 53  NGANNDPDPLQAAPAVFEEARSKKSQNMTECVPVPSSEHVAEIVGRQG 100

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328719242|ref|XP_001943718.2| PREDICTED: RNA-binding protein MEX3B-like [Acyrthosiphon pisum]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/31 (90%), Positives = 29/31 (93%)

Query: 28  EDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           E+ RNKKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 74  EEPRNKKSQNMTECVPVPSSEHVAEIVGRQG 104

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195354415|ref|XP_002043693.1| GM26809 [Drosophila sechellia] gi|194128881|gb|EDW50924.1| GM26809 [Drosophila sechellia]

 Score = 59.7 bits (143), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/40 (77%), Positives = 34/40 (85%), Gaps = 1/40 (2%)

Query: 19  LPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
           LP+    S+ED R+KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct: 104 LPNAGAVSSED-RSKKSQNMTECVPVPSSEHVAEIVGRQG 142

Source: Drosophila sechellia

Species: Drosophila sechellia

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	61
FB|FBgn0039920	628	CG11360 [Drosophila melanogast	0.819	0.079	0.629	2.5e-09
UNIPROTKB|F1M336	618	Mex3d "Protein Mex3d" [Rattus	0.918	0.090	0.553	2.9e-08
MGI|MGI:2681847	643	Mex3d "mex3 homolog D (C. eleg	0.918	0.087	0.553	3.1e-08
RGD|1310576	692	Mex3d "mex-3 homolog D (C. ele	0.918	0.080	0.553	3.4e-08
UNIPROTKB|I3LKC4	593	MEX3D "Uncharacterized protein	0.934	0.096	0.531	3.5e-08
UNIPROTKB|Q86XN8	651	MEX3D "RNA-binding protein MEX	0.885	0.082	0.551	1.1e-07
UNIPROTKB|E9PAL6	666	MEX3D "RNA-binding protein MEX	0.885	0.081	0.551	1.1e-07
UNIPROTKB|J9P026	480	MEX3B "Uncharacterized protein	0.426	0.054	0.961	1.1e-07
ZFIN|ZDB-GENE-030131-2628	537	mex3b "mex-3 homolog B (C. ele	0.426	0.048	0.961	1.3e-07
UNIPROTKB|F1PM07	567	MEX3B "Uncharacterized protein	0.426	0.045	0.961	1.4e-07

FB|FBgn0039920 CG11360 [Drosophila melanogaster (taxid:7227)]

 Score = 147 (56.8 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 34/54 (62%), Positives = 41/54 (75%)

Query:     8 DSPLGLNGSPH---LPSFLQESAEDLRNKKSANMTECVPVPSSEHVAEIVGRQG 58
             +S L +  +P+   LP+    S+ED R+KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:    91 NSTLPIPSAPNCLLLPNAGAVSSED-RSKKSQNMTECVPVPSSEHVAEIVGRQG 143

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IC

GO:0000381 "regulation of alternative mRNA splicing, via spliceosome" evidence=IMP

UNIPROTKB|F1M336 Mex3d "Protein Mex3d" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 2.9e-08, P = 2.9e-08
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query:     2 NLSSEPDSP-LGLNGSPHLPSFLQES---AEDLR----NKKSANMTECVPVPSSEHVAEI 53
             ++S  P  P +  + +PH P+ L  S   AE L      KKS NMTECVPVPSSEHVAEI
Sbjct:    90 DVSPRPSPPDVFASFAPH-PAALGPSTLLAEQLNVIGSRKKSVNMTECVPVPSSEHVAEI 148

Query:    54 VGRQG 58
             VGRQG
Sbjct:   149 VGRQG 153

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2681847 Mex3d "mex3 homolog D (C. elegans)" [Mus musculus (taxid:10090)]

 Score = 137 (53.3 bits), Expect = 3.1e-08, P = 3.1e-08
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query:     2 NLSSEPDSP-LGLNGSPHLPSFLQES---AEDLR----NKKSANMTECVPVPSSEHVAEI 53
             ++S  P  P +  + +PH P+ L  S   AE L      KKS NMTECVPVPSSEHVAEI
Sbjct:   117 DVSPRPSPPDVFASFAPH-PAALGPSTLLAEQLNVIGSRKKSVNMTECVPVPSSEHVAEI 175

Query:    54 VGRQG 58
             VGRQG
Sbjct:   176 VGRQG 180

GO:0003723 "RNA binding" evidence=IEA

GO:0003730 "mRNA 3'-UTR binding" evidence=ISO

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006402 "mRNA catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0042981 "regulation of apoptotic process" evidence=NAS

GO:0046872 "metal ion binding" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

GO:0050779 "RNA destabilization" evidence=ISO

GO:0061157 "mRNA destabilization" evidence=NAS

RGD|1310576 Mex3d "mex-3 homolog D (C. elegans)" [Rattus norvegicus (taxid:10116)]

 Score = 137 (53.3 bits), Expect = 3.4e-08, P = 3.4e-08
 Identities = 36/65 (55%), Positives = 42/65 (64%)

Query:     2 NLSSEPDSP-LGLNGSPHLPSFLQES---AEDLR----NKKSANMTECVPVPSSEHVAEI 53
             ++S  P  P +  + +PH P+ L  S   AE L      KKS NMTECVPVPSSEHVAEI
Sbjct:   164 DVSPRPSPPDVFASFAPH-PAALGPSTLLAEQLNVIGSRKKSVNMTECVPVPSSEHVAEI 222

Query:    54 VGRQG 58
             VGRQG
Sbjct:   223 VGRQG 227

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0008270 "zinc ion binding" evidence=IEA

GO:0017091 "AU-rich element binding" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|I3LKC4 MEX3D "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 136 (52.9 bits), Expect = 3.5e-08, P = 3.5e-08
 Identities = 34/64 (53%), Positives = 40/64 (62%)

Query:     2 NLSSEPDSPLGLNG-SPHL-----PSFLQESAEDLRN-KKSANMTECVPVPSSEHVAEIV 54
             ++S  P  P    G +PH      P+ L E    + + KKS NMTECVPVPSSEHVAEIV
Sbjct:    75 DVSPRPSPPDVFAGFAPHPAALGPPTLLAEQMSVIGSRKKSVNMTECVPVPSSEHVAEIV 134

Query:    55 GRQG 58
             GRQG
Sbjct:   135 GRQG 138

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q86XN8 MEX3D "RNA-binding protein MEX3D" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 32/58 (55%), Positives = 36/58 (62%)

Query:     5 SEPDSPLGLNGSPHL---PSFLQESAEDLRN-KKSANMTECVPVPSSEHVAEIVGRQG 58
             S PD   G    P     P+ L +    + + KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:   142 SPPDVFAGFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQG 199

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0061157 "mRNA destabilization" evidence=NAS

GO:0010609 "mRNA localization resulting in posttranscriptional regulation of gene expression" evidence=NAS

GO:0017091 "AU-rich element binding" evidence=IDA

GO:0042981 "regulation of apoptotic process" evidence=NAS

UNIPROTKB|E9PAL6 MEX3D "RNA-binding protein MEX3D" [Homo sapiens (taxid:9606)]

 Score = 132 (51.5 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 32/58 (55%), Positives = 36/58 (62%)

Query:     5 SEPDSPLGLNGSPHL---PSFLQESAEDLRN-KKSANMTECVPVPSSEHVAEIVGRQG 58
             S PD   G    P     P+ L +    + + KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:   142 SPPDVFAGFAPHPAALGPPTLLADQMSVIGSRKKSVNMTECVPVPSSEHVAEIVGRQG 199

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|J9P026 MEX3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.1e-07, P = 1.1e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query:    33 KKSANMTECVPVPSSEHVAEIVGRQG 58
             KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:    74 KKSVNMTECVPVPSSEHVAEIVGRQG 99

GO:0003723 "RNA binding" evidence=IEA

ZFIN|ZDB-GENE-030131-2628 mex3b "mex-3 homolog B (C. elegans)" [Danio rerio (taxid:7955)]

 Score = 130 (50.8 bits), Expect = 1.3e-07, P = 1.3e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query:    33 KKSANMTECVPVPSSEHVAEIVGRQG 58
             KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:    53 KKSVNMTECVPVPSSEHVAEIVGRQG 78

GO:0003723 "RNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|F1PM07 MEX3B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 130 (50.8 bits), Expect = 1.4e-07, P = 1.4e-07
 Identities = 25/26 (96%), Positives = 25/26 (96%)

Query:    33 KKSANMTECVPVPSSEHVAEIVGRQG 58
             KKS NMTECVPVPSSEHVAEIVGRQG
Sbjct:    61 KKSVNMTECVPVPSSEHVAEIVGRQG 86

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q69Z36	MEX3B_MOUSE	No assigned EC number	0.9259	0.4426	0.0449	no	N/A
A1L3F4	MEX3B_XENLA	No assigned EC number	0.9230	0.4262	0.0512	N/A	N/A
Q3UE17	MEX3D_MOUSE	No assigned EC number	0.9259	0.4426	0.0419	no	N/A
Q86XN8	MEX3D_HUMAN	No assigned EC number	0.9259	0.4426	0.0414	yes	N/A
Q6ZN04	MEX3B_HUMAN	No assigned EC number	0.9259	0.4426	0.0474	no	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	61
KOG2113|consensus	394		98.28

>KOG2113|consensus

Probab=98.28  E-value=1.7e-07  Score=72.91  Aligned_cols=31  Identities=61%  Similarity=0.846  Sum_probs=27.6

Q ss_pred             hhcccceeceeeeeeCCchHHHHHHhhcCcCC
Q psy3064          30 LRNKKSANMTECVPVPSSEHVAEIVGRQGFGM   61 (61)
Q Consensus        30 ~~~~ks~n~te~VpVPSsehvaEivgrqGCK~   61 (61)
                      .+..+-+||||+|+|| +|||+||||||||||
T Consensus        18 ~~~~~p~nvt~sv~vp-s~~v~~ivg~qg~ki   48 (394)
T KOG2113|consen   18 YRTSIGQNVTESVEVP-SEHVAEIVGRQGCKI   48 (394)
T ss_pred             cCCCCCCccceeeecC-cccceeecccCcccc
Confidence            4455559999999999 999999999999997

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	61
d2ctka1	91	Vigilin {Human (Homo sapiens) [TaxId: 9606]}	80.08

>d2ctka1 d.51.1.1 (A:8-98) Vigilin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Eukaryotic type KH-domain (KH-domain type I)
superfamily: Eukaryotic type KH-domain (KH-domain type I)
family: Eukaryotic type KH-domain (KH-domain type I)
domain: Vigilin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.08  E-value=0.24  Score=27.26  Aligned_cols=27  Identities=26%  Similarity=0.333  Sum_probs=21.0

Q ss_pred             ccceeceeeeeeCCchHHHHHHhhcCcC
Q psy3064          33 KKSANMTECVPVPSSEHVAEIVGRQGFG   60 (61)
Q Consensus        33 ~ks~n~te~VpVPSsehvaEivgrqGCK   60 (61)
                      +..+.+++.+.||+. ++.-|+|++|+.
T Consensus         5 ~~~~~vt~~i~Vp~~-~~~~iIG~~G~~   31 (91)
T d2ctka1           5 EALVPVTIEVEVPFD-LHRYVIGQKGSG   31 (91)
T ss_dssp             CCSSCEEEEEECCHH-HHHHHHCSSSHH
T ss_pred             hhhCCEEEEEEECHH-HHhHhcCCCchh
Confidence            344578999999954 558899999975