Psyllid ID: psy3162

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-
Protein Sequence
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEVA
Secondary Structure (PSIPRED)
cccccccccccccccccEEccccccEEEEEEEEEccccccEEEEEEEEEEEccccEEEEEcEEEEcccEEEcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHcHHHcccccEEEEEEccccccEEEEEEEEEEEcccccccEEcEEEEccccccHHHHcccccccccccccccc
Coil and Loop (DISEMBL)
mpkpqptksflglYCGKVLTYALDFVLSTLrttrlasfpDYLMFHLKKFTMKEDWTLAKLdvevempdtidltplrgsgpqpgeemlpeva
Flexible Loop (DISEMBL)
mpkpqptksFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTidltplrgsgpqpgeemlpeva
Low Complexity Region (SEG)
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEVA
Disordered region (IsUnstruct)
*********FLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTI*********************
Disordered Region (DISOPRED)
******T*SFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTP*************P***
Disordered Region (DISEMBL)
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGP***********
Disordered Region (DISPRO)
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRG**************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPKPQPTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	91	2.2.26 [Sep-21-2011]
P56399	858	Ubiquitin carboxyl-termin	yes	N/A	0.769	0.081	0.542	7e-16
P45974	858	Ubiquitin carboxyl-termin	yes	N/A	0.769	0.081	0.542	7e-16
Q5R407	858	Ubiquitin carboxyl-termin	yes	N/A	0.769	0.081	0.542	8e-16
Q8L6Y1	797	Ubiquitin carboxyl-termin	yes	N/A	0.769	0.087	0.485	6e-15
E1BMF7	863	Ubiquitin carboxyl-termin	no	N/A	0.791	0.083	0.472	1e-13
Q5BKP2	858	Ubiquitin carboxyl-termin	no	N/A	0.769	0.081	0.471	1e-13
Q92995	863	Ubiquitin carboxyl-termin	no	N/A	0.769	0.081	0.471	2e-13
E1BY77	862	Ubiquitin carboxyl-termin	no	N/A	0.725	0.076	0.5	4e-12
F1QFS9	860	Ubiquitin carboxyl-termin	no	N/A	0.780	0.082	0.450	1e-11
F6V6I0	846	Ubiquitin carboxyl-termin	no	N/A	0.725	0.078	0.469	3e-11

>sp|P56399|UBP5_MOUSE Ubiquitin carboxyl-terminal hydrolase 5 OS=Mus musculus GN=Usp5 PE=1 SV=1

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL      ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608

Query: 82  PGEEMLPEVA 91
           PGEE LP++A
Sbjct: 609 PGEEELPDIA 618

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity.
Mus musculus (taxid: 10090)
EC: 3EC: .EC: 4EC: .EC: 1EC: 9EC: .EC: 1EC: 2

>sp|P45974|UBP5_HUMAN Ubiquitin carboxyl-terminal hydrolase 5 OS=Homo sapiens GN=USP5 PE=1 SV=2

 Score = 82.4 bits (202), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL      ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608

Query: 82  PGEEMLPEVA 91
           PGEE LP++A
Sbjct: 609 PGEEELPDIA 618

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity. Knock-down of USP5 causes the accumulation of p53/TP53 and an increase in p53/TP53 transcriptional activity because the unanchored polyubiquitin that accumulates is able to compete with ubiquitinated p53/TP53 but not with MDM2 for proteasomal recognition.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5R407|UBP5_PONAB Ubiquitin carboxyl-terminal hydrolase 5 OS=Pongo abelii GN=UBP5 PE=2 SV=1

 Score = 82.4 bits (202), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL      ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G Q
Sbjct: 549 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 608

Query: 82  PGEEMLPEVA 91
           PGEE LP++A
Sbjct: 609 PGEEELPDIA 618

Cleaves linear and branched multiubiquitin polymers with a marked preference for branched polymers. Involved in unanchored 'Lys-48'-linked polyubiquitin disassembly. Binds linear and 'Lys-63'-linked polyubiquitin with a lower affinity.

Pongo abelii (taxid: 9601)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q8L6Y1|UBP14_ARATH Ubiquitin carboxyl-terminal hydrolase 14 OS=Arabidopsis thaliana GN=UBP14 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query: 20  TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
           + AL  + + ++TT L SFPDYL+ H++KF M+E W   KLDV +++PD ID++ +R  G
Sbjct: 531 SSALKGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKG 590

Query: 80  PQPGEEMLPE 89
            QPGEE+LP+
Sbjct: 591 LQPGEELLPD 600

Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Involved in seed and embryo development.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|E1BMF7|UBP13_BOVIN Ubiquitin carboxyl-terminal hydrolase 13 OS=Bos taurus GN=USP13 PE=3 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 48/72 (66%)

Query: 20  TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
           + AL    + ++T+R ASFP+YL+  +KKFT   DW   K DV V+MPD +D+  LR  G
Sbjct: 559 SSALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSVDMPDLLDINHLRARG 618

Query: 80  PQPGEEMLPEVA 91
            QPGEE LP+++
Sbjct: 619 LQPGEEELPDIS 630

Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to confirm such data.

Bos taurus (taxid: 9913)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q5BKP2|UBP13_MOUSE Ubiquitin carboxyl-terminal hydrolase 13 OS=Mus musculus GN=Usp13 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 48/70 (68%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL    + ++T+R ASFP+YL+  +KKFT   DW   K DV ++MPD +D++ LR  G Q
Sbjct: 559 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPRKFDVSIDMPDLLDISHLRARGLQ 618

Query: 82  PGEEMLPEVA 91
           PGEE LP+++
Sbjct: 619 PGEEELPDIS 628

Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to confirm such data.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q92995|UBP13_HUMAN Ubiquitin carboxyl-terminal hydrolase 13 OS=Homo sapiens GN=USP13 PE=1 SV=2

 Score = 74.3 bits (181), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL    + ++T+R ASFP+YL+  +KKFT   DW   K DV ++MPD +D+  LR  G Q
Sbjct: 561 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 620

Query: 82  PGEEMLPEVA 91
           PGEE LP+++
Sbjct: 621 PGEEELPDIS 630

Deubiquitinase that mediates deubiquitination of target proteins such as BECN1, MITF, SKP2 and USP10 and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD). Component of a regulatory loop that controls autophagy and p53/TP53 levels: mediates deubiquitination of BECN1, a key regulator of autophagy, leading to stabilize the PIK3C3/VPS34-containing complexes. Also deubiquitinates USP10, an essential regulator of p53/TP53 stability. In turn, PIK3C3/VPS34-containing complexes regulate USP13 stability, suggesting the existence of a regulatory system by which PIK3C3/VPS34-containing complexes regulate p53/TP53 protein levels via USP10 and USP13. Recruited by nuclear UFD1 and mediates deubiquitination of SKP2, thereby regulating endoplasmic reticulum-associated degradation (ERAD). Mediates stabilization of SIAH2 independently of deubiquitinase activity: binds ubiquitinated SIAH2 and acts by impairing SIAH2 autoubiquitination. Has a weak deubiquitinase activity in vitro and preferentially cleaves 'Lys-63'-linked polyubiquitin chains. In contrast to USP5, it is not able to mediate unanchored polyubiquitin disassembly. Able to cleave ISG15 in vitro; however, additional experiments are required to confirm such data.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|E1BY77|UBP13_CHICK Ubiquitin carboxyl-terminal hydrolase 13 OS=Gallus gallus GN=USP13 PE=3 SV=1

 Score = 70.1 bits (170), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL    + ++T+R ASFP YL+  +KKFT   DW   KLDV ++MPD +D++ LR  G Q
Sbjct: 556 ALQAKSAGVKTSRFASFPQYLVVQIKKFTFGLDWIPKKLDVSIDMPDFLDISHLRAMGLQ 615

Query: 82  PGEEML 87
           PGEE L
Sbjct: 616 PGEEEL 621

Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD).

Gallus gallus (taxid: 9031)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|F1QFS9|UBP13_DANRE Ubiquitin carboxyl-terminal hydrolase 13 OS=Danio rerio GN=usp13 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 48/71 (67%)

Query: 20  TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG 79
           + AL    + ++T+R A+FP+Y++  LKKFT   DW   KLD+ V++PD +DL  LR +G
Sbjct: 542 SSALQAKSAGVKTSRFATFPEYMIVQLKKFTFGVDWVPKKLDMSVDVPDFLDLNRLRATG 601

Query: 80  PQPGEEMLPEV 90
            Q GEE LP++
Sbjct: 602 LQAGEEELPDL 612

Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|F6V6I0|UBP13_XENTR Ubiquitin carboxyl-terminal hydrolase 13 OS=Xenopus tropicalis GN=usp13 PE=3 SV=2

 Score = 67.4 bits (163), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 31/66 (46%), Positives = 44/66 (66%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL    + ++T+R ASFP+YL+  +KKFT   DW   KLDV ++MPD +D+  LR +G +
Sbjct: 542 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKLDVSIDMPDLLDINHLRATGLK 601

Query: 82  PGEEML 87
            GEE L
Sbjct: 602 SGEEEL 607

Deubiquitinase that mediates deubiquitination of target proteins and is involved in various processes such as autophagy and endoplasmic reticulum-associated degradation (ERAD).

Xenopus tropicalis (taxid: 8364)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
322801464	818	hypothetical protein SINV_08392 [Solenop	0.670	0.074	0.737	5e-19
307174012	799	Ubiquitin carboxyl-terminal hydrolase 5	0.648	0.073	0.762	6e-19
332019367	803	Ubiquitin carboxyl-terminal hydrolase 5	0.670	0.075	0.737	2e-18
340714339	810	PREDICTED: ubiquitin carboxyl-terminal h	0.747	0.083	0.661	5e-18
340714337	802	PREDICTED: ubiquitin carboxyl-terminal h	0.747	0.084	0.661	6e-18
350417343	802	PREDICTED: ubiquitin carboxyl-terminal h	0.747	0.084	0.661	6e-18
380025673	805	PREDICTED: LOW QUALITY PROTEIN: ubiquiti	0.747	0.084	0.647	1e-17
156543203	799	PREDICTED: ubiquitin carboxyl-terminal h	0.747	0.085	0.676	1e-17
307192538	806	Ubiquitin carboxyl-terminal hydrolase 5	0.747	0.084	0.647	2e-17
328788537	802	PREDICTED: ubiquitin carboxyl-terminal h	0.747	0.084	0.647	4e-17

>gi|322801464|gb|EFZ22125.1| hypothetical protein SINV_08392 [Solenopsis invicta]

 Score = 98.6 bits (244), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 54/61 (88%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEV 90
           +TTRLASFPDYL+ HLKKFT+KEDWT  KLDV +EMPDT+DL+ LRG+G QPGEE+LP+ 
Sbjct: 563 KTTRLASFPDYLLIHLKKFTVKEDWTPIKLDVAIEMPDTVDLSFLRGNGLQPGEELLPDG 622

Query: 91  A 91
           A
Sbjct: 623 A 623

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307174012|gb|EFN64722.1| Ubiquitin carboxyl-terminal hydrolase 5 [Camponotus floridanus]

 Score = 97.8 bits (242), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 45/59 (76%), Positives = 53/59 (89%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
           +TTRLASFPDYL+ HLKKFT+KEDWT  KLDV VEMPDT+DL+ LRG+G QPGEE+LP+
Sbjct: 546 KTTRLASFPDYLLIHLKKFTVKEDWTPIKLDVAVEMPDTVDLSFLRGNGLQPGEELLPD 604

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332019367|gb|EGI59868.1| Ubiquitin carboxyl-terminal hydrolase 5 [Acromyrmex echinatior]

 Score = 96.7 bits (239), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 53/61 (86%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPEV 90
           +TTRLASFPDYL+ HLKKFT+KEDWT  KLDV +EMPDTIDL+ LRG+G Q GEE+LP+ 
Sbjct: 548 KTTRLASFPDYLLIHLKKFTVKEDWTPIKLDVAIEMPDTIDLSFLRGNGLQSGEELLPDG 607

Query: 91  A 91
           A
Sbjct: 608 A 608

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714339|ref|XP_003395687.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like isoform 2 [Bombus terrestris]

 Score = 94.7 bits (234), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRL++FPDYL+ HLKKFTMKEDWT AKLDV VEMPD ++L+ LRG G Q
Sbjct: 544 ALNEKTTAQKTTRLSTFPDYLLIHLKKFTMKEDWTPAKLDVAVEMPDILNLSSLRGFGLQ 603

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 604 PTEELLPE 611

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340714337|ref|XP_003395686.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like isoform 1 [Bombus terrestris]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRL++FPDYL+ HLKKFTMKEDWT AKLDV VEMPD ++L+ LRG G Q
Sbjct: 536 ALNEKTTAQKTTRLSTFPDYLLIHLKKFTMKEDWTPAKLDVAVEMPDILNLSSLRGFGLQ 595

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 596 PTEELLPE 603

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350417343|ref|XP_003491376.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Bombus impatiens]

 Score = 94.7 bits (234), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 45/68 (66%), Positives = 55/68 (80%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRL++FPDYL+ HLKKFTMKEDWT AKLDV VEMPD ++L+ LRG G Q
Sbjct: 536 ALNEKTTAQKTTRLSTFPDYLLIHLKKFTMKEDWTPAKLDVAVEMPDILNLSSLRGFGLQ 595

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 596 PTEELLPE 603

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|380025673|ref|XP_003696593.1| PREDICTED: LOW QUALITY PROTEIN: ubiquitin carboxyl-terminal hydrolase 5-like [Apis florea]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRLA+FPDYL+ HLKKF MKEDWT  KLDV VEMPD ++L+ LRG G Q
Sbjct: 536 ALNEKTTAQKTTRLATFPDYLLIHLKKFMMKEDWTPVKLDVAVEMPDILNLSSLRGFGLQ 595

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 596 PTEELLPE 603

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|156543203|ref|XP_001606298.1| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Nasonia vitripennis]

 Score = 94.0 bits (232), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 46/68 (67%), Positives = 54/68 (79%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRLASFPDYL+ HLKKFT+KEDWT  KLDV VEMPD +DL  LRG+G Q
Sbjct: 534 ALNDKTTATKTTRLASFPDYLLLHLKKFTVKEDWTPIKLDVAVEMPDLLDLNFLRGNGLQ 593

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 594 PTEELLPE 601

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192538|gb|EFN75726.1| Ubiquitin carboxyl-terminal hydrolase 5 [Harpegnathos saltator]

 Score = 93.2 bits (230), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 55/68 (80%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+      +TTRL SFPDYL+ HL+K+T++EDWT  KLDV VEMPDT+DL+ LRG+G Q
Sbjct: 539 ALNGRTMAHKTTRLDSFPDYLLIHLRKYTVQEDWTPIKLDVAVEMPDTLDLSFLRGTGLQ 598

Query: 82  PGEEMLPE 89
           PGEE+LPE
Sbjct: 599 PGEELLPE 606

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328788537|ref|XP_624702.2| PREDICTED: ubiquitin carboxyl-terminal hydrolase 5-like [Apis mellifera]

 Score = 91.7 bits (226), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 44/68 (64%), Positives = 53/68 (77%)

Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL+   +  +TTRLA+FPDYL+ HLKKF MKEDWT  KLDV VEMPD ++L+ LRG G Q
Sbjct: 536 ALNEKTTAQKTTRLATFPDYLLIHLKKFMMKEDWTPVKLDVAVEMPDILNLSSLRGFGLQ 595

Query: 82  PGEEMLPE 89
           P EE+LPE
Sbjct: 596 PTEELLPE 603

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	91
UNIPROTKB|F1N3P2	858	USP5 "Ubiquitin carboxyl-termi	0.681	0.072	0.580	4e-15
UNIPROTKB|P45974	858	USP5 "Ubiquitin carboxyl-termi	0.681	0.072	0.580	4e-15
MGI|MGI:1347343	858	Usp5 "ubiquitin specific pepti	0.681	0.072	0.580	4e-15
RGD|1308438	858	Usp5 "ubiquitin specific pepti	0.681	0.072	0.580	4e-15
UNIPROTKB|F1SLU6	859	USP5 "Ubiquitin carboxyl-termi	0.681	0.072	0.580	4e-15
UNIPROTKB|F1P9P5	868	USP5 "Ubiquitin carboxyl-termi	0.681	0.071	0.580	4e-15
TAIR|locus:2083440	797	UBP14 "ubiquitin-specific prot	0.747	0.085	0.5	2e-14
UNIPROTKB|E1C8W4	833	USP5 "Ubiquitin carboxyl-termi	0.681	0.074	0.548	5.7e-14
UNIPROTKB|H7C5J3	299	USP13 "Ubiquitin carboxyl-term	0.769	0.234	0.471	1.3e-13
UNIPROTKB|F1SGC5	436	USP13 "Uncharacterized protein	0.769	0.160	0.471	4.6e-13

UNIPROTKB|F1N3P2 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Bos taurus (taxid:9913)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616

Query:    90 VA 91
             +A
Sbjct:   617 IA 618

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|P45974 USP5 "Ubiquitin carboxyl-terminal hydrolase 5" [Homo sapiens (taxid:9606)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616

Query:    90 VA 91
             +A
Sbjct:   617 IA 618

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0071108 "protein K48-linked deubiquitination" evidence=IMP

GO:0005764 "lysosome" evidence=TAS

GO:0004197 "cysteine-type endopeptidase activity" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1347343 Usp5 "ubiquitin specific peptidase 5 (isopeptidase T)" [Mus musculus (taxid:10090)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616

Query:    90 VA 91
             +A
Sbjct:   617 IA 618

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005575 "cellular_component" evidence=ND

GO:0006508 "proteolysis" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016787 "hydrolase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=ISO

RGD|1308438 Usp5 "ubiquitin specific peptidase 5 (isopeptidase T)" [Rattus norvegicus (taxid:10116)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   557 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 616

Query:    90 VA 91
             +A
Sbjct:   617 IA 618

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA;ISO

UNIPROTKB|F1SLU6 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Sus scrofa (taxid:9823)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   558 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 617

Query:    90 VA 91
             +A
Sbjct:   618 IA 619

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

UNIPROTKB|F1P9P5 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Canis lupus familiaris (taxid:9615)]

 Score = 203 (76.5 bits), Expect = 4.0e-15, P = 4.0e-15
 Identities = 36/62 (58%), Positives = 48/62 (77%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP+
Sbjct:   590 VKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELPD 649

Query:    90 VA 91
             +A
Sbjct:   650 IA 651

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

TAIR|locus:2083440 UBP14 "ubiquitin-specific protease 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 2.0e-14, P = 2.0e-14
 Identities = 34/68 (50%), Positives = 50/68 (73%)

Query:    22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
             AL  + + ++TT L SFPDYL+ H++KF M+E W   KLDV +++PD ID++ +R  G Q
Sbjct:   533 ALKGMTTAIKTTGLTSFPDYLVLHMRKFVMEEGWVPKKLDVYIDVPDVIDISHMRSKGLQ 592

Query:    82 PGEEMLPE 89
             PGEE+LP+
Sbjct:   593 PGEELLPD 600

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0004843 "ubiquitin-specific protease activity" evidence=ISS;IDA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP

GO:0016579 "protein deubiquitination" evidence=IDA

GO:0048767 "root hair elongation" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E1C8W4 USP5 "Ubiquitin carboxyl-terminal hydrolase" [Gallus gallus (taxid:9031)]

 Score = 192 (72.6 bits), Expect = 5.7e-14, P = 5.7e-14
 Identities = 34/62 (54%), Positives = 47/62 (75%)

Query:    30 LRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLPE 89
             L+TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ L+G+G Q GEE +P+
Sbjct:   555 LKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISALQGTGLQDGEEEMPD 614

Query:    90 VA 91
             +A
Sbjct:   615 IA 616

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0008242 "omega peptidase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0071108 "protein K48-linked deubiquitination" evidence=IEA

UNIPROTKB|H7C5J3 USP13 "Ubiquitin carboxyl-terminal hydrolase 13" [Homo sapiens (taxid:9606)]

 Score = 179 (68.1 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query:    22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
             AL    + ++T+R ASFP+YL+  +KKFT   DW   K DV ++MPD +D+  LR  G Q
Sbjct:   207 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 266

Query:    82 PGEEMLPEVA 91
             PGEE LP+++
Sbjct:   267 PGEEELPDIS 276

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

UNIPROTKB|F1SGC5 USP13 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 179 (68.1 bits), Expect = 4.6e-13, P = 4.6e-13
 Identities = 33/70 (47%), Positives = 47/70 (67%)

Query:    22 ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
             AL    + ++T+R ASFP+YL+  +KKFT   DW   K DV ++MPD +D+  LR  G Q
Sbjct:   134 ALQAKSAGVKTSRFASFPEYLVVQIKKFTFGLDWVPKKFDVSIDMPDLLDINHLRARGLQ 193

Query:    82 PGEEMLPEVA 91
             PGEE LP+++
Sbjct:   194 PGEEELPDIS 203

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004221 "ubiquitin thiolesterase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P56399	UBP5_MOUSE	3, ., 4, ., 1, 9, ., 1, 2	0.5428	0.7692	0.0815	yes	N/A
P45974	UBP5_HUMAN	3, ., 4, ., 1, 9, ., 1, 2	0.5428	0.7692	0.0815	yes	N/A
Q5R407	UBP5_PONAB	3, ., 4, ., 1, 9, ., 1, 2	0.5428	0.7692	0.0815	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	91
cd02658	311	cd02658, Peptidase_C19B, A subfamily of Peptidase	1e-12
cd02257	255	cd02257, Peptidase_C19, Peptidase C19 contains ubi	3e-10
pfam00443	313	pfam00443, UCH, Ubiquitin carboxyl-terminal hydrol	4e-10
cd02660	328	cd02660, Peptidase_C19D, A subfamily of Peptidase	0.002

>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19

 Score = 60.8 bits (148), Expect = 1e-12
 Identities = 16/40 (40%), Positives = 28/40 (70%)

Query: 32  TTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTID 71
           TT   +FPDYL+ ++K+F + E+W   KLDV +++P+ + 
Sbjct: 209 TTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELG 248

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 311

>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl hydrolases

 Score = 54.0 bits (130), Expect = 3e-10
 Identities = 17/55 (30%), Positives = 29/55 (52%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEE 85
           +  ++   P  L+ HLK+F+  ED T  KL+ +V  P  +DL+P    G +  + 
Sbjct: 132 KRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDS 186

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 255

>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase

 Score = 54.0 bits (130), Expect = 4e-10
 Identities = 14/57 (24%), Positives = 24/57 (42%)

Query: 29  TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEE 85
            ++   ++  P  L+ HLK+F      T  K+   VE P  +DL+       +  E 
Sbjct: 197 AIKKLDISRLPPVLIIHLKRFEDFNRETEKKISDRVEFPLELDLSSYLEEELEGEEP 253

Length = 313

>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19

 Score = 34.7 bits (80), Expect = 0.002
 Identities = 13/44 (29%), Positives = 22/44 (50%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTP 74
           +   +   P  L F LK+F    + T  K+D  V+ P  +++TP
Sbjct: 209 KQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTP 252

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome. Length = 328

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	91
KOG0944|consensus	763		99.86
cd02668	324	Peptidase_C19L A subfamily of Peptidase C19. Pepti	99.72
cd02667	279	Peptidase_C19K A subfamily of Peptidase C19. Pepti	99.7
cd02660	328	Peptidase_C19D A subfamily of Peptidase C19. Pepti	99.7
cd02663	300	Peptidase_C19G A subfamily of Peptidase C19. Pepti	99.68
KOG1865|consensus	545		99.66
cd02664	327	Peptidase_C19H A subfamily of Peptidase C19. Pepti	99.66
COG5560	823	UBP12 Ubiquitin C-terminal hydrolase [Posttranslat	99.65
cd02671	332	Peptidase_C19O A subfamily of Peptidase C19. Pepti	99.63
cd02659	334	peptidase_C19C A subfamily of Peptidase C19. Pepti	99.59
cd02669	440	Peptidase_C19M A subfamily of Peptidase C19. Pepti	99.57
cd02657	305	Peptidase_C19A A subfamily of Peptidase C19. Pepti	99.56
cd02658	311	Peptidase_C19B A subfamily of Peptidase C19. Pepti	99.54
KOG1866|consensus	944		99.52
KOG1870|consensus	842		99.51
cd02674	230	Peptidase_C19R A subfamily of peptidase C19. Pepti	99.51
cd02661	304	Peptidase_C19E A subfamily of Peptidase C19. Pepti	99.5
cd02662	240	Peptidase_C19F A subfamily of Peptidase C19. Pepti	99.39
KOG4598|consensus	1203		99.37
cd02672	268	Peptidase_C19P A subfamily of Peptidase C19. Pepti	99.35
cd02670	241	Peptidase_C19N A subfamily of Peptidase C19. Pepti	99.34
COG5207	749	UBP14 Isopeptidase T [Posttranslational modificati	99.25
cd02257	255	Peptidase_C19 Peptidase C19 contains ubiquitinyl h	99.25
COG5533	415	UBP5 Ubiquitin C-terminal hydrolase [Posttranslati	99.2
cd02665	228	Peptidase_C19I A subfamily of Peptidase C19. Pepti	99.06
KOG1868|consensus	653		98.97
KOG1867|consensus	492		98.93
PF00443	269	UCH: Ubiquitin carboxyl-terminal hydrolase; InterP	98.92
cd02673	245	Peptidase_C19Q A subfamily of Peptidase C19. Pepti	98.9
PF13423	295	UCH_1: Ubiquitin carboxyl-terminal hydrolase	98.69
KOG1864|consensus	587		98.62
KOG1873|consensus	877		98.6
COG5077	1089	Ubiquitin carboxyl-terminal hydrolase [Posttransla	98.48
KOG1863|consensus	1093		98.41
KOG2026|consensus	442		97.52
KOG1871|consensus	420		97.11
KOG1872|consensus	473		96.36
COG3478	68	Predicted nucleic-acid-binding protein containing	92.34
PF09855	64	DUF2082: Nucleic-acid-binding protein containing Z	88.21
cd02666	343	Peptidase_C19J A subfamily of Peptidase C19. Pepti	83.84
PF15499	275	Peptidase_C98: Ubiquitin-specific peptidase-like,	80.5

>KOG0944|consensus

Probab=99.86  E-value=1.6e-22  Score=161.65  Aligned_cols=86  Identities=38%  Similarity=0.674  Sum_probs=82.0

Q ss_pred             CCCCchhhhh-------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCCC
Q psy3162           5 QPTKSFLGLY-------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRG   77 (91)
Q Consensus         5 ~~~~sl~~cl-------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~~   77 (91)
                      |..|++..|+       .++|.|.+||+|..|+|+++|++||+|||||++||.+ .+|.++|++++|++|++|||+.|++
T Consensus       470 ~~~v~~~~cleaff~pq~~df~s~ac~~K~~a~kt~~~ksfP~yLiiqv~rf~~-~dw~pkKld~~iempe~ldls~~rs  548 (763)
T KOG0944|consen  470 REKVPISACLEAFFEPQVDDFWSTACGEKKGATKTTRFKSFPDYLIIQVGRFTL-QDWVPKKLDVSIEMPEELDLSSYRS  548 (763)
T ss_pred             cccCCHHHHHHHhcCCcchhhhhHhhcCccccccccccccCCceEEEEeeEEEe-cCceeeeeccceecchhhchhhhhh
Confidence            5678899999       4699999999999999999999999999999999999 8999999999999999999999999


Q ss_pred             CCCCCCCccCCCCC
Q psy3162          78 SGPQPGEEMLPEVA   91 (91)
Q Consensus        78 ~g~q~ge~~lpe~~   91 (91)
                      .|+||||++||+++
T Consensus       549 ~g~~p~ee~lpde~  562 (763)
T KOG0944|consen  549 KGLQPGEEALPDEA  562 (763)
T ss_pred             cCCCCcccccCCcC
Confidence            99999999999975

>cd02668 Peptidase_C19L A subfamily of Peptidase C19

Probab=99.72  E-value=1.3e-17  Score=123.25  Aligned_cols=73  Identities=18%  Similarity=0.296  Sum_probs=65.3

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..||++|+           .+.|.|++|++++.|.|+..|.++|++|+||||||.++. .+...|+++.|+||+.|||++
T Consensus       155 ~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~  234 (324)
T cd02668         155 HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGE  234 (324)
T ss_pred             cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechh
Confidence            46889998           245999999999999999999999999999999999974 477899999999999999999


Q ss_pred             CCCCC
Q psy3162          75 LRGSG   79 (91)
Q Consensus        75 ~~~~g   79 (91)
                      |+..+
T Consensus       235 ~~~~~  239 (324)
T cd02668         235 YLAES  239 (324)
T ss_pred             hcccc
Confidence            97543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02667 Peptidase_C19K A subfamily of Peptidase C19

Probab=99.70  E-value=2.6e-17  Score=119.70  Aligned_cols=71  Identities=21%  Similarity=0.318  Sum_probs=64.5

Q ss_pred             CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCC
Q psy3162           5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLT   73 (91)
Q Consensus         5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls   73 (91)
                      ...+||++|+           .+.|.|++|++   |+|+..|.++|++|+||||||.++.+|...|+++.|+||+.|||+
T Consensus       108 ~~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~  184 (279)
T cd02667         108 KSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLA  184 (279)
T ss_pred             CCCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchh
Confidence            4568999999           25699999998   899999999999999999999997777889999999999999999


Q ss_pred             CCCCC
Q psy3162          74 PLRGS   78 (91)
Q Consensus        74 ~~~~~   78 (91)
                      +|+..
T Consensus       185 ~~~~~  189 (279)
T cd02667         185 PFCDP  189 (279)
T ss_pred             hccCc
Confidence            99865

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02660 Peptidase_C19D A subfamily of Peptidase C19

Probab=99.70  E-value=3.9e-17  Score=119.87  Aligned_cols=74  Identities=20%  Similarity=0.248  Sum_probs=66.4

Q ss_pred             CCCCchhhhh--------c--CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCC
Q psy3162           5 QPTKSFLGLY--------C--GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         5 ~~~~sl~~cl--------~--~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      .+..||++|+        +  +.|+|++|+.++.+.|++.|.++|++|+||||||.++..|...|++..|.||.+|||++
T Consensus       173 ~~~~sl~~~L~~~~~~e~~~~~~~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~  252 (328)
T cd02660         173 SGTPTLSDCLDRFTRPEKLGDFAYKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTP  252 (328)
T ss_pred             CCCCCHHHHHHHhcCccccCCCCccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhh
Confidence            3458999998        1  23899999999999999999999999999999999965588899999999999999999


Q ss_pred             CCCC
Q psy3162          75 LRGS   78 (91)
Q Consensus        75 ~~~~   78 (91)
                      |+..
T Consensus       253 ~~~~  256 (328)
T cd02660         253 YTSS  256 (328)
T ss_pred             hccc
Confidence            9875

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02663 Peptidase_C19G A subfamily of Peptidase C19

Probab=99.68  E-value=9.3e-17  Score=117.67  Aligned_cols=70  Identities=20%  Similarity=0.220  Sum_probs=62.9

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..||++|+           .+.|+|++|+.++.|+|++.|.++|++|+||||||.++.. +...|++..|.||.+|||..
T Consensus       146 ~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~~  225 (300)
T cd02663         146 NTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLFN  225 (300)
T ss_pred             cCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEeccc
Confidence            56899998           2579999999999999999999999999999999999754 36789999999999999988


Q ss_pred             CC
Q psy3162          75 LR   76 (91)
Q Consensus        75 ~~   76 (91)
                      +.
T Consensus       226 ~~  227 (300)
T cd02663         226 TT  227 (300)
T ss_pred             cc
Confidence            74

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1865|consensus

Probab=99.66  E-value=3.5e-17  Score=128.86  Aligned_cols=65  Identities=26%  Similarity=0.358  Sum_probs=59.8

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCCCCCCCCCCc
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEE   85 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~~~g~q~ge~   85 (91)
                      .|.|+|++|++++.|.|+++|.+.|.||+||||||+.   ++..||+..|.||+.|||.+|++   |++|.
T Consensus       284 en~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LKRF~~---~~~gKI~K~I~fPE~LDl~PyMS---~~~e~  348 (545)
T KOG1865|consen  284 ENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLKRFSN---GTGGKISKPVSFPETLDLQPYMS---QPNEG  348 (545)
T ss_pred             ccccccchhhhhCcccceeeeecCCceEEEeeehhcc---CcccccccccCCccccccccccc---CCCCC
Confidence            5899999999999999999999999999999999997   45679999999999999999998   45554

>cd02664 Peptidase_C19H A subfamily of Peptidase C19

Probab=99.66  E-value=1.1e-16  Score=118.83  Aligned_cols=61  Identities=13%  Similarity=0.250  Sum_probs=56.5

Q ss_pred             CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCC
Q psy3162          16 GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLR   76 (91)
Q Consensus        16 ~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~   76 (91)
                      +.|+|++|++++.|.|++.|.++|+||+||||||.++.. +...|++..|.||..|||..|.
T Consensus       153 n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~  214 (327)
T cd02664         153 NQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRV  214 (327)
T ss_pred             CceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccc
Confidence            459999999999999999999999999999999999754 6778999999999999999886

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=1.3e-17  Score=133.43  Aligned_cols=73  Identities=22%  Similarity=0.226  Sum_probs=67.6

Q ss_pred             CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCC
Q psy3162           5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDL   72 (91)
Q Consensus         5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDl   72 (91)
                      ..++||.+|+           .+.|+|+.|++++.|+|++.|+++|.+||||||||.. .+..+.|+++-|.|| ++|||
T Consensus       672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss-~rsfrdKiddlVeyPiddldL  750 (823)
T COG5560         672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSS-VRSFRDKIDDLVEYPIDDLDL  750 (823)
T ss_pred             cCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhh-cccchhhhhhhhccccccccc
Confidence            3689999999           5899999999999999999999999999999999998 677889999999999 99999


Q ss_pred             CCCCCC
Q psy3162          73 TPLRGS   78 (91)
Q Consensus        73 s~~~~~   78 (91)
                      +.+.+.
T Consensus       751 s~~~~~  756 (823)
T COG5560         751 SGVEYM  756 (823)
T ss_pred             cceEEe
Confidence            987654

>cd02671 Peptidase_C19O A subfamily of Peptidase C19

Probab=99.63  E-value=5.2e-16  Score=116.37  Aligned_cols=71  Identities=17%  Similarity=0.191  Sum_probs=62.3

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-----CeeeecceEEecCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-----WTLAKLDVEVEMPDTI   70 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-----~~~~Kl~~~V~~P~~L   70 (91)
                      ..||++|+           .|+|+|++|+.++.|+|++.|.++|++|+||||||.++..     +...|++..|.||..|
T Consensus       179 ~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~L  258 (332)
T cd02671         179 MKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLKL  258 (332)
T ss_pred             cCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCcccc
Confidence            36899998           2579999999999999999999999999999999998532     2468999999999999


Q ss_pred             CCCCCCC
Q psy3162          71 DLTPLRG   77 (91)
Q Consensus        71 Dls~~~~   77 (91)
                      ||.++..
T Consensus       259 ~~~~~~~  265 (332)
T cd02671         259 SLEEWST  265 (332)
T ss_pred             ccccccC
Confidence            9998764

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02659 peptidase_C19C A subfamily of Peptidase C19

Probab=99.59  E-value=3.1e-15  Score=110.00  Aligned_cols=74  Identities=18%  Similarity=0.243  Sum_probs=64.7

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..++++|+           .+.|+|++|++++.|.|+..|.++|++|+|||+||.++. .+...|++..|+||..|||++
T Consensus       150 ~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~  229 (334)
T cd02659         150 KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEP  229 (334)
T ss_pred             CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcc
Confidence            45677887           245999999999999999999999999999999999963 366789999999999999999


Q ss_pred             CCCCCC
Q psy3162          75 LRGSGP   80 (91)
Q Consensus        75 ~~~~g~   80 (91)
                      |+..+.
T Consensus       230 ~~~~~~  235 (334)
T cd02659         230 YTEKGL  235 (334)
T ss_pred             cccccc
Confidence            987654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02669 Peptidase_C19M A subfamily of Peptidase C19

Probab=99.57  E-value=2e-15  Score=116.58  Aligned_cols=70  Identities=21%  Similarity=0.312  Sum_probs=63.1

Q ss_pred             CCchhhhhcCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCC-CCCCCCCCC
Q psy3162           7 TKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDT-IDLTPLRGS   78 (91)
Q Consensus         7 ~~sl~~cl~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~-LDls~~~~~   78 (91)
                      .+++++|+ ++|.|+.|.....|+|+++|+++|+||+||||||.++ .+...|+++.|+||.. |||++|...
T Consensus       302 ~~~l~e~L-~ky~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~-~~~~~K~~t~V~FP~~~LDm~~y~~~  372 (440)
T cd02669         302 QVPLKQLL-KKYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKN-NFFKEKNPTIVNFPIKNLDLSDYVHF  372 (440)
T ss_pred             cccHHHHH-HhcCCccceecccceEEEEEeeCCcEEEEEEecccCC-CCccccCCCEEECCCCccchhhhhCc
Confidence            47888887 5899999999999999999999999999999999995 4677899999999975 899999863

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02657 Peptidase_C19A A subfamily of Peptidase C19

Probab=99.56  E-value=7e-15  Score=107.15  Aligned_cols=71  Identities=23%  Similarity=0.221  Sum_probs=62.0

Q ss_pred             CCchhhhhc------CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCC
Q psy3162           7 TKSFLGLYC------GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRG   77 (91)
Q Consensus         7 ~~sl~~cl~------~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~   77 (91)
                      ..+|++|+.      ....|+.|+....++|+..|.++|++|+||||||.++.. +...|+++.|.||.+|||++|+.
T Consensus       159 ~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~  236 (305)
T cd02657         159 VNYLQDGLKKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYELCT  236 (305)
T ss_pred             cccHHHHHHHhhhhhhhhcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEecccccC
Confidence            457888883      345799999999999999999999999999999999644 45789999999999999999874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02658 Peptidase_C19B A subfamily of Peptidase C19

Probab=99.54  E-value=1.4e-14  Score=105.98  Aligned_cols=70  Identities=23%  Similarity=0.440  Sum_probs=61.6

Q ss_pred             CCCchhhhh-------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162           6 PTKSFLGLY-------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL   75 (91)
Q Consensus         6 ~~~sl~~cl-------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~   75 (91)
                      +.+||++|+       .-.++|+.|++++.|+|+.+|.++|++|+|||+||.++.+|.+.|++..|.||..|.-..|
T Consensus       176 ~~~sl~~~L~~~~~~e~i~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~Y  252 (311)
T cd02658         176 EPVPLEDCLKAYFAPETIEDFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGKY  252 (311)
T ss_pred             CCCCHHHHHHHHcCcccccccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCcE
Confidence            467999999       2357899999999999999999999999999999999778999999999999987744444

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1866|consensus

Probab=99.52  E-value=4.9e-16  Score=125.95  Aligned_cols=67  Identities=22%  Similarity=0.319  Sum_probs=62.8

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEEC-CCCeeeecceEEecCCCCCCCCCCCCCCC
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMK-EDWTLAKLDVEVEMPDTIDLTPLRGSGPQ   81 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~-~~~~~~Kl~~~V~~P~~LDls~~~~~g~q   81 (91)
                      .|.|+|++|++|+...|++.|++||.||+||||||.|| ++....|.|..+.||.+|||++|..+|..
T Consensus       264 ~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMePYtvsg~a  331 (944)
T KOG1866|consen  264 ANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEPYTVSGVA  331 (944)
T ss_pred             cchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCceeehhhh
Confidence            59999999999999999999999999999999999997 56678899999999999999999988865

>KOG1870|consensus

Probab=99.51  E-value=2.4e-15  Score=124.08  Aligned_cols=76  Identities=18%  Similarity=0.271  Sum_probs=68.9

Q ss_pred             CCCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCC
Q psy3162           4 PQPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTID   71 (91)
Q Consensus         4 ~~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LD   71 (91)
                      ..+.+||+.|+           .+.|+|+.|++++.|+|++.++++|++||||||||.+ .++...|+++.|+|| ..||
T Consensus       692 ~~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~-~r~~~~k~~~~v~fPi~~ld  770 (842)
T KOG1870|consen  692 SPAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQY-SRESSSKVKTKVEFPLGSLD  770 (842)
T ss_pred             CCCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeeccee-echhhhhhCccccCCCcCCC
Confidence            44589999999           4899999999999999999999999999999999999 555569999999999 8999


Q ss_pred             CCCCCCCCC
Q psy3162          72 LTPLRGSGP   80 (91)
Q Consensus        72 ls~~~~~g~   80 (91)
                      +++|...+-
T Consensus       771 ~s~~~~~~~  779 (842)
T KOG1870|consen  771 LSEFVVNKE  779 (842)
T ss_pred             cchhhccCc
Confidence            999987653

>cd02674 Peptidase_C19R A subfamily of peptidase C19

Probab=99.51  E-value=2.6e-14  Score=99.85  Aligned_cols=70  Identities=21%  Similarity=0.328  Sum_probs=63.0

Q ss_pred             CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162           6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT   73 (91)
Q Consensus         6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls   73 (91)
                      +..||.+|+           .+.+.|++|+.++.+.++..|.++|++|+|||+||.++ ++...|++..|.|| +.|||+
T Consensus        82 ~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~-~~~~~K~~~~v~~~~~~l~l~  160 (230)
T cd02674          82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFS-RGSTRKLTTPVTFPLNDLDLT  160 (230)
T ss_pred             CCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecC-CCCcccCCceEeccccccccc
Confidence            568999998           24699999999999999999999999999999999994 47788999999999 679999


Q ss_pred             CCC
Q psy3162          74 PLR   76 (91)
Q Consensus        74 ~~~   76 (91)
                      +|.
T Consensus       161 ~~~  163 (230)
T cd02674         161 PYV  163 (230)
T ss_pred             ccc
Confidence            884

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02661 Peptidase_C19E A subfamily of Peptidase C19

Probab=99.50  E-value=3.2e-14  Score=102.55  Aligned_cols=69  Identities=20%  Similarity=0.297  Sum_probs=61.1

Q ss_pred             Cchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCC
Q psy3162           8 KSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLR   76 (91)
Q Consensus         8 ~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~   76 (91)
                      .+|.+|+           .+.|+|++|++++.+.++..|.++|++|+|||+||.++   ...|++..|.||++|||++|.
T Consensus       162 ~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~---~~~Ki~~~v~f~~~L~l~~~~  238 (304)
T cd02661         162 DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNF---RGGKINKQISFPETLDLSPYM  238 (304)
T ss_pred             CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccC---CccccCCeEecCCeechhhcc
Confidence            4677777           23489999999999999999999999999999999994   567999999999999999988


Q ss_pred             CCC
Q psy3162          77 GSG   79 (91)
Q Consensus        77 ~~g   79 (91)
                      ..+
T Consensus       239 ~~~  241 (304)
T cd02661         239 SQP  241 (304)
T ss_pred             ccC
Confidence            653

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02662 Peptidase_C19F A subfamily of Peptidase C19

Probab=99.39  E-value=6.4e-13  Score=95.04  Aligned_cols=56  Identities=16%  Similarity=0.197  Sum_probs=50.8

Q ss_pred             CCchhhhh--------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCC
Q psy3162           7 TKSFLGLY--------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTI   70 (91)
Q Consensus         7 ~~sl~~cl--------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~L   70 (91)
                      ..|+++|+        +++|.|++|        +..|.++|++|+||||||.++..|...|+++.|.||+.|
T Consensus        95 ~~sl~~~L~~~~~~E~l~~~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l  158 (240)
T cd02662          95 GTTLEHCLDDFLSTEIIDDYKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERL  158 (240)
T ss_pred             CCCHHHHHHHhcCcccccCcCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCcc
Confidence            67899999        468999999        678999999999999999997558999999999999988

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG4598|consensus

Probab=99.37  E-value=1.1e-13  Score=112.50  Aligned_cols=69  Identities=19%  Similarity=0.304  Sum_probs=61.9

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCCCCCCCCCCC
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTPLRGSGPQPG   83 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~~~~~g~q~g   83 (91)
                      .|+|.|++|+++..|.|-++|++||-+|.||||||.+|- .....|||..++||+.|||..|....-..|
T Consensus       232 ~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~in~~~~s~  301 (1203)
T KOG4598|consen  232 SNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDYVNKEKRST  301 (1203)
T ss_pred             ccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHhhhhccCCc
Confidence            589999999999999999999999999999999999973 488999999999999999999985443333

>cd02672 Peptidase_C19P A subfamily of Peptidase C19

Probab=99.35  E-value=1.2e-12  Score=95.93  Aligned_cols=72  Identities=17%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             CCCchhhhh--------cCCcccCCCCCcceeEEEeecccCCC----eeEEEeeceEECCC------CeeeecceEEecC
Q psy3162           6 PTKSFLGLY--------CGKVLTYALDFVLSTLRTTRLASFPD----YLMFHLKKFTMKED------WTLAKLDVEVEMP   67 (91)
Q Consensus         6 ~~~sl~~cl--------~~~~~C~~C~~~~~a~k~~~~~~lP~----vLiihlkRF~~~~~------~~~~Kl~~~V~~P   67 (91)
                      +.+||.+|+        .++|.|++|++++.|+|+++|++||+    ||+||||||.....      ....|++..|.+|
T Consensus       115 ~~~sl~~cL~~~~~~E~~~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v~f~  194 (268)
T cd02672         115 KESTFLQLLKRSLDLEKVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKVSPK  194 (268)
T ss_pred             cCCCHHHHHHHHhhhhhcccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCeeccc
Confidence            568999999        57899999999999999999999999    99999999997311      1346888999999


Q ss_pred             CCCCCCCCCC
Q psy3162          68 DTIDLTPLRG   77 (91)
Q Consensus        68 ~~LDls~~~~   77 (91)
                      ..+|+..+..
T Consensus       195 ~~~~~~~~~~  204 (268)
T cd02672         195 AIDHDKLVKN  204 (268)
T ss_pred             ccccchhhhc
Confidence            8887766543

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>cd02670 Peptidase_C19N A subfamily of Peptidase C19

Probab=99.34  E-value=9.4e-13  Score=95.61  Aligned_cols=61  Identities=18%  Similarity=0.209  Sum_probs=51.3

Q ss_pred             CCCchhhhhcCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCCCCC
Q psy3162           6 PTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSG   79 (91)
Q Consensus         6 ~~~sl~~cl~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~~~g   79 (91)
                      ..+||++|+..-+.-+.            |+++|++|+||||||.++. |...|+++.|.||..|||++|....
T Consensus        78 ~~~tLedcLe~~~~~e~------------i~~lP~vLiIhLKRF~~~~-~~~~Kl~~~I~fP~~Ldl~~~~~~~  138 (241)
T cd02670          78 GGITLEQCLEQYFNNSV------------FAKAPSCLIICLKRYGKTE-GKAQKMFKKILIPDEIDIPDFVADD  138 (241)
T ss_pred             CcCCHHHHHHHHhchhh------------hhhCCCeEEEEEEccccCC-CcceeCCcEECCCCcCCchhhcccc
Confidence            57999999943332222            9999999999999999965 7889999999999999999998654

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.8e-12  Score=101.58  Aligned_cols=74  Identities=20%  Similarity=0.331  Sum_probs=68.5

Q ss_pred             CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC--CCCCCCCCCCCCCCCCCccCCCC
Q psy3162          16 GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP--DTIDLTPLRGSGPQPGEEMLPEV   90 (91)
Q Consensus        16 ~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P--~~LDls~~~~~g~q~ge~~lpe~   90 (91)
                      -.|.|++|+.+..|+++..|++||+|||+|..||.+ .+|...||..+|.+-  +-+|+++|++.-....|..|||+
T Consensus       476 iE~~CenCk~K~~a~~k~~~kslPk~LIlq~~R~~l-qny~v~kls~pi~~~~D~m~~~~s~msk~~PqtEn~LPde  551 (749)
T COG5207         476 IEWSCENCKGKKKASRKPFIKSLPKYLILQVGRYSL-QNYKVEKLSDPIEMRSDDMIKLGSFMSKFDPQTENLLPDE  551 (749)
T ss_pred             eeeehhhhcCcccccccchhhccCceeEEecceeec-cceeehhccCceEEccccccchhhHhhccCCcccccCCcc
Confidence            489999999999999999999999999999999999 799999999999997  45999999999666699999986

>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases

Probab=99.25  E-value=2.4e-11  Score=82.88  Aligned_cols=72  Identities=26%  Similarity=0.413  Sum_probs=64.2

Q ss_pred             CCCchhhhh--------cCCcccCCCC--CcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162           6 PTKSFLGLY--------CGKVLTYALD--FVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL   75 (91)
Q Consensus         6 ~~~sl~~cl--------~~~~~C~~C~--~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~   75 (91)
                      ...+|.+|+        .....|..|+  +.+.+.++..|.++|++|+||++||.++..|...|++..|.+|++|++..+
T Consensus        97 ~~~~l~~~l~~~~~~e~~~~~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~~~~  176 (255)
T cd02257          97 PQVSLEDCLEKFFKEEILEGDNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDLSPY  176 (255)
T ss_pred             CCCcHHHHHHHhhhhhccCCCCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccCccc
Confidence            367899998        4778899998  688899999999999999999999999544889999999999999999888


Q ss_pred             CC
Q psy3162          76 RG   77 (91)
Q Consensus        76 ~~   77 (91)
                      ..
T Consensus       177 ~~  178 (255)
T cd02257         177 LS  178 (255)
T ss_pred             cc
Confidence            64

They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=99.20  E-value=1.6e-11  Score=92.72  Aligned_cols=49  Identities=16%  Similarity=0.186  Sum_probs=40.9

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEE
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEV   64 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V   64 (91)
                      .++|+|++|+.+..++|++.|.++|++||||++||.... ..++|+|++-
T Consensus       282 ~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~RF~i~V-~~~~kiD~p~  330 (415)
T COG5533         282 KDAWRCPKCGRKESSRKRMEILVLPDVLIIHISRFHISV-MGRKKIDTPQ  330 (415)
T ss_pred             cccccCchhcccccchheEEEEecCceEEEEeeeeeEEe-ecccccCCCc
Confidence            489999999999999999999999999999999999632 2345555543

>cd02665 Peptidase_C19I A subfamily of Peptidase C19

Probab=99.06  E-value=1.1e-10  Score=84.21  Aligned_cols=67  Identities=19%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             Cchhhhhc-----CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162           8 KSFLGLYC-----GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL   75 (91)
Q Consensus         8 ~sl~~cl~-----~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~   75 (91)
                      -+|++|+.     +.-....|.....+.|+..|.++|+||+||||||.++. ....|+++.|+||..|+-..|
T Consensus        93 ~~L~e~L~~~~~ee~l~~~~~~~~~~~~~~~~i~~lP~vL~i~LkRF~~~~-~~~~Ki~~~v~FP~~l~~~~Y  164 (228)
T cd02665          93 GNLHECLEAAMFEGEVELLPSDHSVKSGQERWFTELPPVLTFELSRFEFNQ-GRPEKIHDKLEFPQIIQQVPY  164 (228)
T ss_pred             CCHHHHHHHhhhhcccccccccchhhhhhhhhhhhCChhhEEEeEeeEEcC-CccEECCEEEEeeCccCCcee
Confidence            57888881     11122344445567788899999999999999999954 678899999999988744334

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>KOG1868|consensus

Probab=98.97  E-value=7.5e-11  Score=95.52  Aligned_cols=69  Identities=23%  Similarity=0.308  Sum_probs=59.5

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeE--EEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTL--RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDL   72 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~--k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDl   72 (91)
                      .++|.+|+           .+.|.|++|+++..+.  |++.|.+||++|+|||+||..+.+| ..|+...|+|| ..+|+
T Consensus       496 ~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~-~~k~~~~v~~~~~~~~~  574 (653)
T KOG1868|consen  496 KVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNS-FNKLSTGVDFPLREADL  574 (653)
T ss_pred             ccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCccc-ccccceeeccchHhhhh
Confidence            47799999           3679999999999885  9999999999999999999996555 56999999999 67777


Q ss_pred             CCCC
Q psy3162          73 TPLR   76 (91)
Q Consensus        73 s~~~   76 (91)
                      .++.
T Consensus       575 ~~~~  578 (653)
T KOG1868|consen  575 SPRF  578 (653)
T ss_pred             chhc
Confidence            7644

>KOG1867|consensus

Probab=98.93  E-value=5.9e-10  Score=87.99  Aligned_cols=71  Identities=20%  Similarity=0.271  Sum_probs=63.2

Q ss_pred             Cchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCC
Q psy3162           8 KSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLR   76 (91)
Q Consensus         8 ~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~   76 (91)
                      -++.+|+           ..++.|..|+.++.++|++.+..+|.+|.+|+|||.+.......|+++.|.||..|+|.+|+
T Consensus       334 ~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~  413 (492)
T KOG1867|consen  334 LTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYC  413 (492)
T ss_pred             hhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccc
Confidence            4467777           47899999999999999999999999999999999996554445999999999999999999


Q ss_pred             CC
Q psy3162          77 GS   78 (91)
Q Consensus        77 ~~   78 (91)
                      +.
T Consensus       414 ~~  415 (492)
T KOG1867|consen  414 SS  415 (492)
T ss_pred             cc
Confidence            86

>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.92  E-value=7.5e-10  Score=76.85  Aligned_cols=62  Identities=21%  Similarity=0.388  Sum_probs=49.0

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecC-CCCCCCCCCCCCCC
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMP-DTIDLTPLRGSGPQ   81 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P-~~LDls~~~~~g~q   81 (91)
                      .+...|..|+..     +..|.++|++|+||++||.++. .+...|+...|.|| ++|||++|...+..
T Consensus       140 ~~~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~  203 (269)
T PF00443_consen  140 ESSIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNS  203 (269)
T ss_dssp             EEEEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCC
T ss_pred             cccccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccc
Confidence            467899999988     6678999999999999998763 47799999999999 89999999876654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....

>cd02673 Peptidase_C19Q A subfamily of Peptidase C19

Probab=98.90  E-value=1.3e-09  Score=78.94  Aligned_cols=44  Identities=18%  Similarity=0.233  Sum_probs=37.1

Q ss_pred             Cchhhhh-------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEEC
Q psy3162           8 KSFLGLY-------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMK   52 (91)
Q Consensus         8 ~sl~~cl-------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~   52 (91)
                      .++++|+       ..+|+|++|+.+ .|.|+.+|.++|++|+||||||.+.
T Consensus       110 ~~le~l~~~~~~~~~~e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~  160 (245)
T cd02673         110 DIDELLISNFKTWSPIEKDCSSCKCE-SAISSERIMTFPECLSINLKRYKLR  160 (245)
T ss_pred             chHHHHHHHhhcccccCccCCCCCCc-cceeechhhhCChhhEEeeEeeeec
Confidence            3455665       457899999986 7889999999999999999999874

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase

Probab=98.69  E-value=2.9e-08  Score=72.68  Aligned_cols=79  Identities=18%  Similarity=0.283  Sum_probs=68.0

Q ss_pred             CCCCCCCchhhhh--------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCC
Q psy3162           2 PKPQPTKSFLGLY--------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLT   73 (91)
Q Consensus         2 ~~~~~~~sl~~cl--------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls   73 (91)
                      |.....++|.+++        .....|++|++.+.+..+..|.++|+||.|.++|+..+..| ..|+...+.+|..+++.
T Consensus       157 p~~~~~~tf~~~Le~sl~~e~~~~a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w-~~~~~~~~~ip~~i~~~  235 (295)
T PF13423_consen  157 PPSNSNVTFSQVLEHSLNREQQTRAWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFW-PKKNWLKIWIPPSINLP  235 (295)
T ss_pred             CCCCccchHHHHHHHHHhhcccccccccccccccceeeeeeccCCCcEEEEEccCCCccccc-ccccCCceecceeeecc
Confidence            4445678999999        35689999999998888899999999999999999996568 88999999999999999


Q ss_pred             CCCCCCCC
Q psy3162          74 PLRGSGPQ   81 (91)
Q Consensus        74 ~~~~~g~q   81 (91)
                      .+.+...+
T Consensus       236 ~~~~~~~~  243 (295)
T PF13423_consen  236 HFIADDSQ  243 (295)
T ss_pred             cccccccc
Confidence            88766543

>KOG1864|consensus

Probab=98.62  E-value=1.6e-08  Score=81.43  Aligned_cols=68  Identities=22%  Similarity=0.231  Sum_probs=59.3

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCCCCCCCCCC
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTPLRGSGPQP   82 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~~~~~g~q~   82 (91)
                      -+.|+|++|...+.|.|++.++.+|.+|+||||||.++. .....|+...|.+|.+|++......+..+
T Consensus       439 ~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~~~~~~~~~~  507 (587)
T KOG1864|consen  439 ENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLKDTLKDDNNP  507 (587)
T ss_pred             CCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeeccccccccCc
Confidence            489999999999999999999999999999999999973 34567999999999999988766555543

>KOG1873|consensus

Probab=98.60  E-value=2.5e-09  Score=87.50  Aligned_cols=70  Identities=20%  Similarity=0.118  Sum_probs=60.2

Q ss_pred             CCchhhhh-----------cCCcccCCCCC------c---------------------ceeEEEeecccCCCeeEEEeec
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDF------V---------------------LSTLRTTRLASFPDYLMFHLKK   48 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~------~---------------------~~a~k~~~~~~lP~vLiihlkR   48 (91)
                      .+|+..||           .|.|.|+.|-+      .                     +.|.|++-|...|+||+|||||
T Consensus       677 p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlKr  756 (877)
T KOG1873|consen  677 PCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLKR  756 (877)
T ss_pred             CccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHhh
Confidence            57899999           49999999977      1                     1257889999999999999999


Q ss_pred             eEECCCCeeeecceEEecCCCCCCCCCC
Q psy3162          49 FTMKEDWTLAKLDVEVEMPDTIDLTPLR   76 (91)
Q Consensus        49 F~~~~~~~~~Kl~~~V~~P~~LDls~~~   76 (91)
                      |..+..+...|++.+|+|++-+||..|+
T Consensus       757 f~q~~~~~~~k~~~h~~f~E~~dL~~~~  784 (877)
T KOG1873|consen  757 FFQDIRGRLSKLNKHVDFKEFEDLLDYM  784 (877)
T ss_pred             hhhhhhchhhcccccchHHHHHHHHHHh
Confidence            9997667789999999999888888876

>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=2.3e-08  Score=82.46  Aligned_cols=64  Identities=20%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCCCCCCCC
Q psy3162          16 GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTPLRGSGP   80 (91)
Q Consensus        16 ~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~~~~~g~   80 (91)
                      |.|.|+.=| -+.|.|-.-|.+||+||-+|||||.+|. .....|+|...+||+++||.+|.+..-
T Consensus       357 N~Y~ae~~G-lqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiDl~pfld~da  421 (1089)
T COG5077         357 NRYNAEKHG-LQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEIDLLPFLDRDA  421 (1089)
T ss_pred             ccccccccc-chhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhccccccCchh
Confidence            566666544 3579999999999999999999999984 467889999999999999999987643

>KOG1863|consensus

Probab=98.41  E-value=8e-08  Score=81.72  Aligned_cols=61  Identities=16%  Similarity=0.205  Sum_probs=56.7

Q ss_pred             cccCCCCCcceeEEEeecccCCCeeEEEeeceEEC-CCCeeeecceEEecCCCCCCCCCCCC
Q psy3162          18 VLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMK-EDWTLAKLDVEVEMPDTIDLTPLRGS   78 (91)
Q Consensus        18 ~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~-~~~~~~Kl~~~V~~P~~LDls~~~~~   78 (91)
                      -+|+.|...+.|.|.+.|.+||+||.|||+||.++ ......|++....||..|||.+|.+.
T Consensus       338 ~~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~~d~~~~~  399 (1093)
T KOG1863|consen  338 KYDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIIDMDRYLSR  399 (1093)
T ss_pred             cccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccccchhccc
Confidence            38999999999999999999999999999999997 34789999999999999999999764

>KOG2026|consensus

Probab=97.52  E-value=6.8e-05  Score=58.21  Aligned_cols=46  Identities=30%  Similarity=0.579  Sum_probs=41.7

Q ss_pred             EEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCCCCCC
Q psy3162          31 RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLTPLRG   77 (91)
Q Consensus        31 k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls~~~~   77 (91)
                      ++..+.++|++||+|++||.- .+|...|+-+.|+|| ..+|+.++..
T Consensus       327 ~rf~l~k~P~ylifh~~rF~k-Nn~f~ekNpTl~~f~~~~~~~~~~~~  373 (442)
T KOG2026|consen  327 MRFRLTKLPRYLIFHMKRFKK-NNFFKEKNPTLVEFPYSEVDILHVLD  373 (442)
T ss_pred             hheeeecCCceEEEEeeeccc-cCcccccCCceeeccCCccchhhhhh
Confidence            788999999999999999998 679999999999999 7888887653

>KOG1871|consensus

Probab=97.11  E-value=3.8e-05  Score=59.50  Aligned_cols=59  Identities=22%  Similarity=0.289  Sum_probs=50.8

Q ss_pred             CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCC
Q psy3162          16 GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus        16 ~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..++..+-+..+.|.+++.+..||.+|++|+|||.|-..+...|+...|+||-.|.++.
T Consensus       280 lp~~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~  338 (420)
T KOG1871|consen  280 LPGYSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISK  338 (420)
T ss_pred             ccceecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeech
Confidence            44555557778889999999999999999999999944688999999999998888876

>KOG1872|consensus

Probab=96.36  E-value=0.00033  Score=55.34  Aligned_cols=62  Identities=19%  Similarity=0.271  Sum_probs=51.1

Q ss_pred             cCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCCCCCC
Q psy3162          20 TYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRGSGPQ   81 (91)
Q Consensus        20 C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~~g~q   81 (91)
                      .+..|..-.-.|.+.|.+||++|.|+.-||.+... ....|+-..|.||..||.-.++++.++
T Consensus       287 s~~lgr~a~y~k~~~isrlP~ylTvq~vrf~~k~k~~~~akil~~V~fP~~ld~~d~ct~el~  349 (473)
T KOG1872|consen  287 SSILGRPAAYQKVMYISRLPEYLTVQEVRFFSKAKIMVVAKILNAVNFPKDLDQQDLCTPELK  349 (473)
T ss_pred             CcccCCChHHHHHhHhhcCcccceEEEEEEEeccccchHHHHHHhccChhhhhHHHhhCHHhh
Confidence            45556555567889999999999999999999643 666788889999999999999887654

>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]

Probab=92.34  E-value=0.18  Score=30.20  Aligned_cols=36  Identities=6%  Similarity=-0.049  Sum_probs=29.8

Q ss_pred             CCcccCCCCCcceeEEEeecc--cCCCeeEEEeeceEE
Q psy3162          16 GKVLTYALDFVLSTLRTTRLA--SFPDYLMFHLKKFTM   51 (91)
Q Consensus        16 ~~~~C~~C~~~~~a~k~~~~~--~lP~vLiihlkRF~~   51 (91)
                      +.|.|++||...-..|.+...  .+-+++=||.++|..
T Consensus         3 ~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~~   40 (68)
T COG3478           3 NAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFIV   40 (68)
T ss_pred             ccccCCCcCCcchhhceeeccCCCcceeEEecccEEEE
Confidence            567899999988777777664  678999999999986

>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins

Probab=88.21  E-value=0.6  Score=27.65  Aligned_cols=34  Identities=15%  Similarity=-0.020  Sum_probs=24.6

Q ss_pred             cccCCCCCcceeEEEeecc--cCCCeeEEEeeceEE
Q psy3162          18 VLTYALDFVLSTLRTTRLA--SFPDYLMFHLKKFTM   51 (91)
Q Consensus        18 ~~C~~C~~~~~a~k~~~~~--~lP~vLiihlkRF~~   51 (91)
                      |.|++||...-..++++..  -+-.++=|+.+||..
T Consensus         1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f~~   36 (64)
T PF09855_consen    1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKFTT   36 (64)
T ss_pred             CCCCCCCCcceecceEEccCCeeEEEEEecCcEEEE
Confidence            7899999987555555443  345677888888886

>cd02666 Peptidase_C19J A subfamily of Peptidase C19

Probab=83.84  E-value=0.16  Score=38.73  Aligned_cols=45  Identities=9%  Similarity=0.013  Sum_probs=31.8

Q ss_pred             CCCchhhhhcCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162           6 PTKSFLGLYCGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL   75 (91)
Q Consensus         6 ~~~sl~~cl~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~   75 (91)
                      ...+|.+|+..-+.=+.            |.+||++|.||||             +.++.|++.++|.+|
T Consensus       187 ~~~~L~d~L~~~~~~e~------------~~~~P~vl~~qlq-------------~~~~~~~~~~~~dry  231 (343)
T cd02666         187 EPKDLYDALDRYFDYDS------------LTKLPQRSQVQAQ-------------LAQPLQRELISMDRY  231 (343)
T ss_pred             CCCCHHHHHHHhcChhh------------hccCCHHHHHHHh-------------hcccccchheeeccc
Confidence            35678888843332222            9999999999999             445566777777777

Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.

>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase

Probab=80.50  E-value=0.6  Score=34.90  Aligned_cols=26  Identities=19%  Similarity=0.200  Sum_probs=23.0

Q ss_pred             ccCCCCCcceeEEEeecccCCCeeEEE
Q psy3162          19 LTYALDFVLSTLRTTRLASFPDYLMFH   45 (91)
Q Consensus        19 ~C~~C~~~~~a~k~~~~~~lP~vLiih   45 (91)
                      -|.+|+.+.. .++|.+.+.|+++.+|
T Consensus       172 pCn~C~~ksQ-~rkMvlekv~~vfmLH  197 (275)
T PF15499_consen  172 PCNSCNSKSQ-RRKMVLEKVPPVFMLH  197 (275)
T ss_pred             CCcccCChHH-hHhhhhhcCchhhhhh
Confidence            5889998875 5889999999999999

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	91
3ihp_A	854	Covalent Ubiquitin-Usp5 Complex Length = 854		6e-17

>pdb|3IHP|A Chain A, Covalent Ubiquitin-Usp5 Complex Length = 854

Iteration: 1
 Score = 82.4 bits (202), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 50/70 (71%)
Query: 22  ALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQ 81
           AL      ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G Q
Sbjct: 568 ALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQ 627
Query: 82  PGEEMLPEVA 91
           PGEE LP++A
Sbjct: 628 PGEEELPDIA 637

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	91
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	4e-17
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	4e-07
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	1e-05
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	1e-05
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	4e-05

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens} Length = 854

 Score = 73.4 bits (179), Expect = 4e-17
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query: 29  TLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQPGEEMLP 88
            ++TTR ASFPDYL+  +KKFT   DW   KLDV +EMP+ +D++ LRG+G QPGEE LP
Sbjct: 575 AVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLRGTGLQPGEEELP 634

Query: 89  EVA 91
           ++A
Sbjct: 635 DIA 637

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 3m99_A Length = 476

 Score = 44.9 bits (106), Expect = 4e-07
 Identities = 10/44 (22%), Positives = 20/44 (45%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTP 74
           +   +   P  L+  LK+F    + +  KLD  +E P  +++  
Sbjct: 352 KQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKN 395

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A Length = 404

 Score = 40.8 bits (95), Expect = 1e-05
 Identities = 12/46 (26%), Positives = 25/46 (54%), Gaps = 1/46 (2%)

Query: 31  RTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPL 75
           ++++++  P YL   + +F  KE     AK+  +V+ P  +D+  L
Sbjct: 223 KSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYEL 268

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A Length = 353

 Score = 40.6 bits (95), Expect = 1e-05
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 15  CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFT-MKEDWTLAKLDVEVEMPDTIDLT 73
            G              +  +  + P  L   L +F    +     K++   E P+ + L 
Sbjct: 177 HGLQ---------EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 227

Query: 74  P 74
            
Sbjct: 228 E 228

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 9/61 (14%), Positives = 18/61 (29%), Gaps = 10/61 (16%)

Query: 15  CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFT-MKEDWTLAKLDVEVEMPDTIDLT 73
            G              +  +  + P  L   L +F    +     K++   E P+ + L 
Sbjct: 346 HGLQ---------EAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 396

Query: 74  P 74
            
Sbjct: 397 E 397

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	91
3ihp_A	854	Ubiquitin carboxyl-terminal hydrolase 5; hydrolase	99.86
2y6e_A	367	Ubiquitin carboxyl-terminal hydrolase 4; HET: CME;	99.74
2gfo_A	396	Ubiquitin carboxyl-terminal hydrolase 8; protease,	99.68
3i3t_A	355	Ubiquitin carboxyl-terminal hydrolase 21; hydrolas	99.68
3mhs_A	476	Ubiquitin carboxyl-terminal hydrolase 8; multi-pro	99.67
3nhe_A	348	Ubiquitin carboxyl-terminal hydrolase 2; cysteine	99.66
1vjv_A	415	Ubiquitin carboxyl-terminal hydrolase 6; YFR010W,	99.62
2ayn_A	404	Ubiquitin carboxyl-terminal hydrolase 14; deubiqui	99.6
1nb8_A	353	Ubiquitin carboxyl-terminal hydrolase 7; UBP, deub	99.57
2f1z_A	522	Ubiquitin carboxyl-terminal hydrolase 7; hausp, US	99.54
2vhf_A	374	Ubiquitin carboxyl-terminal hydrolase CYLD; cytoki	98.0
2con_A	79	RUH-035 protein, NIN one binding protein; ribosome	83.07

>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}

Probab=99.86  E-value=1.3e-22  Score=165.43  Aligned_cols=86  Identities=44%  Similarity=0.782  Sum_probs=81.0

Q ss_pred             CCCCchhhhh--------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCC
Q psy3162           5 QPTKSFLGLY--------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLR   76 (91)
Q Consensus         5 ~~~~sl~~cl--------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~   76 (91)
                      ++.+||++||        +++|+|++|+.++.|+|++.|.+||+||+||||||.++.+|...|+++.|.||+.|||++|+
T Consensus       543 ~~~~sL~dcL~~f~~~E~Le~y~C~~C~~k~~a~K~~~i~~lP~vLiihLkRF~~d~~~~~~Ki~~~V~FP~~LDl~~y~  622 (854)
T 3ihp_A          543 RAQVPFSSCLEAYGAPEQVDDFWSTALQAKSVAVKTTRFASFPDYLVIQIKKFTFGLDWVPKKLDVSIEMPEELDISQLR  622 (854)
T ss_dssp             CEECCHHHHHHHHHSCEEEEEEEETTTTEEEEEEEEEEESSCCSEEEEEECCEEECGGGCEEECCEECCCCSEEECGGGB
T ss_pred             cCCCCHHHHHHHhcCceEeeeeeccccCCcceeeEEEEeeeCCceEEEEeehheecCCCceEECCeEEecCCcEehHHhc
Confidence            4558999999        56799999999999999999999999999999999997679999999999999999999999


Q ss_pred             CCCCCCCCccCCCC
Q psy3162          77 GSGPQPGEEMLPEV   90 (91)
Q Consensus        77 ~~g~q~ge~~lpe~   90 (91)
                      +.|.|+||+++|+.
T Consensus       623 ~~~~q~~E~~lp~~  636 (854)
T 3ihp_A          623 GTGLQPGEEELPDI  636 (854)
T ss_dssp             CCCSCTTCCBCCCC
T ss_pred             cCCCCCCceecccc
Confidence            99999999999984

>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}

Probab=99.74  E-value=9.4e-19  Score=128.86  Aligned_cols=73  Identities=21%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCC-CCCC
Q psy3162           5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPD-TIDL   72 (91)
Q Consensus         5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~-~LDl   72 (91)
                      ...+||++|+           .|.|+|++|++++.|+|++.|.++|+||+||||||.+ .+|...|+++.|.||. .|||
T Consensus       208 ~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~-~~~~~~K~~~~v~fp~~~Ldl  286 (367)
T 2y6e_A          208 KTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSY-NRYWRDKLDTVVEFPIRGLNM  286 (367)
T ss_dssp             --CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEE-CSSCEEECCCCEECCSSCEEC
T ss_pred             CCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeee-cCccceecCceEEecCCcCCh
Confidence            3568999999           2579999999999999999999999999999999999 4677899999999995 7999


Q ss_pred             CCCCCC
Q psy3162          73 TPLRGS   78 (91)
Q Consensus        73 s~~~~~   78 (91)
                      ++|...
T Consensus       287 ~~~~~~  292 (367)
T 2y6e_A          287 SEFVCN  292 (367)
T ss_dssp             GGGBSC
T ss_pred             hhhccC
Confidence            999864

>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A

Probab=99.68  E-value=4e-17  Score=122.30  Aligned_cols=72  Identities=19%  Similarity=0.370  Sum_probs=64.1

Q ss_pred             CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162           6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT   73 (91)
Q Consensus         6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls   73 (91)
                      +..||++|+           .|.|+|++|+.++.|+|++.|.++|+||+||||||.++..| ..|+++.|.|| +.|||+
T Consensus       246 ~~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~-~~K~~~~v~fp~~~Ldl~  324 (396)
T 2gfo_A          246 SKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRW-KQKLQTSVDFPLENLDLS  324 (396)
T ss_dssp             SEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSS-EEECCCEEECCSSCBCCG
T ss_pred             ccCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCcc-ceecCceEecchhhcccc
Confidence            357899998           25699999999999999999999999999999999996545 57999999999 679999


Q ss_pred             CCCCC
Q psy3162          74 PLRGS   78 (91)
Q Consensus        74 ~~~~~   78 (91)
                      +|...
T Consensus       325 ~~~~~  329 (396)
T 2gfo_A          325 QYVIG  329 (396)
T ss_dssp             GGBCS
T ss_pred             ccccC
Confidence            99864

>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A

Probab=99.68  E-value=2.1e-17  Score=119.63  Aligned_cols=72  Identities=17%  Similarity=0.285  Sum_probs=63.9

Q ss_pred             CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162           6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT   73 (91)
Q Consensus         6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls   73 (91)
                      +.+||++|+           .|.|+|++|++++.|+|++.|.++|+||+||||||.+ .++...|+++.|.|| +.|||+
T Consensus       204 ~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~-~~~~~~K~~~~v~fp~~~l~l~  282 (355)
T 3i3t_A          204 GKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSA-SRGSIKKSSVGVDFPLQRLSLG  282 (355)
T ss_dssp             --CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEEC-CSSCCEECCCCCBCCSSCEECG
T ss_pred             CccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheec-CCCCceECCcceeCCccccCch
Confidence            467999999           2569999999999999999999999999999999999 568889999999999 779999


Q ss_pred             CCCCC
Q psy3162          74 PLRGS   78 (91)
Q Consensus        74 ~~~~~   78 (91)
                      +|...
T Consensus       283 ~~~~~  287 (355)
T 3i3t_A          283 DFASD  287 (355)
T ss_dssp             GGBC-
T ss_pred             hhccC
Confidence            99754

>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A

Probab=99.67  E-value=2.8e-17  Score=124.82  Aligned_cols=76  Identities=14%  Similarity=0.186  Sum_probs=68.4

Q ss_pred             CCCchhhhh--------c--CCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCC
Q psy3162           6 PTKSFLGLY--------C--GKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPL   75 (91)
Q Consensus         6 ~~~sl~~cl--------~--~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~   75 (91)
                      ...||++|+        +  +.|+|++|+.++.|+|+..|.++|+||+||||||.++.+|...|+++.|.||..|||++|
T Consensus       317 ~~~sl~~~L~~~~~~E~l~~~~~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~~~  396 (476)
T 3mhs_A          317 DKKKLYECLDSFHKKEQLKDFNYHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMKNY  396 (476)
T ss_dssp             TCCBHHHHHHHHHCCEECSSCCCEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECGGG
T ss_pred             hhhHHHHHHHHhcChhhccCCCCcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeechhh
Confidence            346899998        2  259999999999999999999999999999999999778999999999999999999999


Q ss_pred             CCCCCC
Q psy3162          76 RGSGPQ   81 (91)
Q Consensus        76 ~~~g~q   81 (91)
                      ...+..
T Consensus       397 ~~~~~~  402 (476)
T 3mhs_A          397 CSTKEK  402 (476)
T ss_dssp             BSCCBC
T ss_pred             cCcccc
Confidence            976543

>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A

Probab=99.66  E-value=4.2e-17  Score=117.78  Aligned_cols=73  Identities=21%  Similarity=0.324  Sum_probs=65.8

Q ss_pred             CCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCCC
Q psy3162           6 PTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDLT   73 (91)
Q Consensus         6 ~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDls   73 (91)
                      +.+||++|+           .+.|+|++|+.++.|.|+..|.++|++|+||||||.+ ..+...|++..|.|| +.|||+
T Consensus       194 ~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~-~~~~~~K~~~~v~fp~~~ldl~  272 (348)
T 3nhe_A          194 PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSE-SRIRTSKLTTFVNFPLRDLDLR  272 (348)
T ss_dssp             SCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCC-CSSCCCBCCCCEECCSSCEECG
T ss_pred             CCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccc-cCCceeecCcceeccCCcCCHh
Confidence            457999999           2569999999999999999999999999999999998 467889999999999 789999


Q ss_pred             CCCCCC
Q psy3162          74 PLRGSG   79 (91)
Q Consensus        74 ~~~~~g   79 (91)
                      +|...+
T Consensus       273 ~~~~~~  278 (348)
T 3nhe_A          273 EFASEN  278 (348)
T ss_dssp             GGBCTT
T ss_pred             hhcCCC
Confidence            998654

>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9

Probab=99.62  E-value=2.3e-16  Score=117.90  Aligned_cols=73  Identities=12%  Similarity=0.067  Sum_probs=57.1

Q ss_pred             CCchhhhh------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCCCC
Q psy3162           7 TKSFLGLY------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRGSG   79 (91)
Q Consensus         7 ~~sl~~cl------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~~g   79 (91)
                      .-+|.+|+      ...|+|++|+..+.|+|++.|.++|+||+||||||.++.. +...|++..|.||..|||++|+..+
T Consensus       185 ~~~l~~~L~~~~~e~i~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~~~~~  264 (415)
T 1vjv_A          185 TNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPE  264 (415)
T ss_dssp             CCBHHHHHHHHHEEC---------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBCHH
T ss_pred             cchHHHHHHHHhhhhhhhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHhcChh
Confidence            34788888      2468999999999999999999999999999999999643 6789999999999999999998754

>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A

Probab=99.60  E-value=1.8e-16  Score=117.48  Aligned_cols=73  Identities=19%  Similarity=0.235  Sum_probs=63.9

Q ss_pred             CCchhhhh------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCCCC
Q psy3162           7 TKSFLGLY------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRGSG   79 (91)
Q Consensus         7 ~~sl~~cl------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~~g   79 (91)
                      ..+|.+|+      ...|+|++|++.+.|+|++.|.++|+||+||||||.++.. +...|++..|.||..|||++|+..+
T Consensus       193 ~~~l~~~L~~~~~e~l~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~~~~~~  272 (404)
T 2ayn_A          193 VKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCTPE  272 (404)
T ss_dssp             CCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBCHH
T ss_pred             cccHHHHHHHhcccceeecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhHhcChh
Confidence            35788888      2458999999999999999999999999999999999633 4678999999999999999998753

>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A

Probab=99.57  E-value=7.3e-16  Score=113.65  Aligned_cols=71  Identities=14%  Similarity=0.219  Sum_probs=57.0

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..++.+|+           .+.|.|+.|+ ++.|+|++.|.++|+||+||||||.++. .|...|++..|.||..|||++
T Consensus       150 ~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~~  228 (353)
T 1nb8_A          150 KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE  228 (353)
T ss_dssp             CSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECGG
T ss_pred             CcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehhh
Confidence            35788887           2569999996 6779999999999999999999999964 377889999999999999999


Q ss_pred             CCCC
Q psy3162          75 LRGS   78 (91)
Q Consensus        75 ~~~~   78 (91)
                      |+..
T Consensus       229 ~~~~  232 (353)
T 1nb8_A          229 FLQK  232 (353)
T ss_dssp             GBSS
T ss_pred             hhcc
Confidence            9864

>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}

Probab=99.54  E-value=4.8e-15  Score=114.31  Aligned_cols=71  Identities=14%  Similarity=0.219  Sum_probs=62.1

Q ss_pred             CCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCC
Q psy3162           7 TKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTP   74 (91)
Q Consensus         7 ~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~   74 (91)
                      ..++.+|+           .+.|.|+.|+ ++.|+|++.|.++|+||+||||||.++. .|...|+++.|+||..|||++
T Consensus       319 ~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~~  397 (522)
T 2f1z_A          319 KKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDE  397 (522)
T ss_dssp             CCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECGG
T ss_pred             cccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecchh
Confidence            35788887           2579999996 5779999999999999999999999974 377899999999999999999


Q ss_pred             CCCC
Q psy3162          75 LRGS   78 (91)
Q Consensus        75 ~~~~   78 (91)
                      |+..
T Consensus       398 ~~~~  401 (522)
T 2f1z_A          398 FLQK  401 (522)
T ss_dssp             GBSS
T ss_pred             hhcc
Confidence            9864

>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}

Probab=98.00  E-value=1.7e-06  Score=65.58  Aligned_cols=44  Identities=20%  Similarity=0.283  Sum_probs=39.3

Q ss_pred             ecccCCCeeEEEeeceEECCCCeeeecceEEecCCCCCCCCCCCCCCCC
Q psy3162          34 RLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMPDTIDLTPLRGSGPQP   82 (91)
Q Consensus        34 ~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P~~LDls~~~~~g~q~   82 (91)
                      .|.++|+||+||+.||     +..-|+-..|.||.+||+.+++...+++
T Consensus       162 kisrLP~yLtVq~vRF-----gKkaKIlrkV~fp~eLDvtdl~tdelr~  205 (374)
T 2vhf_A          162 KFAEAPSCLIIQMPRF-----GKDFKLFKKIFPSLELNITDLLEDTPRQ  205 (374)
T ss_dssp             EESSCCSEEEEECCCC-----SSSSSCCCCCBCCSEECCGGGBSSSCCB
T ss_pred             eeecCCcceEEeeecc-----CccccccCCCCCcchhccHhhcCcchhh
Confidence            3999999999999999     2445999999999999999999888765

>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1

Probab=83.07  E-value=0.63  Score=27.82  Aligned_cols=36  Identities=8%  Similarity=-0.007  Sum_probs=25.4

Q ss_pred             cCCcccCCCCCcceeEEEeecccCCCeeEEEee-ceE-E
Q psy3162          15 CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLK-KFT-M   51 (91)
Q Consensus        15 ~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlk-RF~-~   51 (91)
                      +...+|++||..+--.-...+..= -.+.+|++ +|. +
T Consensus        28 ~~k~FCp~CGn~TL~Rvsvsvd~~-G~~~~hl~~n~~~~   65 (79)
T 2con_A           28 MNRVFCGHCGNKTLKKVSVTINDD-GTLHMHFSRNPKVL   65 (79)
T ss_dssp             SSCCSCSSSCCSCCEEEECBCCSS-CCCBCCCCCCCCCC
T ss_pred             cccccccccCcccceEEEEEECCC-CcEEEeccCCcccc
Confidence            578899999997654444445544 66788997 577 5

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	91
d1nbfa_	347	Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAU	99.32
d2ayna1	383	Ubiquitin carboxyl-terminal hydrolase 14 {Human (H	99.26
d2hd5a1	336	Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Hum	98.69
d2gfoa1	348	Ubiquitin carboxyl-terminal hydrolase 8 {Human (Ho	98.56
d1vjva_	397	Ubiquitin carboxyl-terminal hydrolase 6 {Baker's y	98.36

>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 7 (USP7, HAUSP)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=7.5e-13  Score=94.44  Aligned_cols=62  Identities=13%  Similarity=0.188  Sum_probs=53.4

Q ss_pred             cccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCCCCCCC
Q psy3162          18 VLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTPLRGSG   79 (91)
Q Consensus        18 ~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~~~~~g   79 (91)
                      ..|..|+....|.|+..|.++|++|+|||+||.++. .+...|++..|.||+.|||++|....
T Consensus       171 ~~~~~~~~~~~~~k~~~i~~lP~vL~i~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~~~~~~  233 (347)
T d1nbfa_         171 KYDAGEHGLQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKT  233 (347)
T ss_dssp             CEECSTTCEECEEEEEEEEECCSEEEEEEECEEEETTTTEEEECCCCCBCCSEEECGGGBSSC
T ss_pred             ccccccCcceeccEEEEEEecCChheEeeeeeeeccccCcccccCceEeeeeeeccccccccc
Confidence            445556677889999999999999999999999864 47788999999999999999998554

>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase 14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=7.8e-13  Score=93.63  Aligned_cols=74  Identities=20%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             CCCCchhhhh------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECC-CCeeeecceEEecCCCCCCCCCCC
Q psy3162           5 QPTKSFLGLY------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKE-DWTLAKLDVEVEMPDTIDLTPLRG   77 (91)
Q Consensus         5 ~~~~sl~~cl------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~-~~~~~Kl~~~V~~P~~LDls~~~~   77 (91)
                      ....++.+|+      ...++|+.|+..+.+.++..|.++|++|+||++||.++. .+...|++..|+||..|||.+|..
T Consensus       181 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~~K~~~~v~fp~~ldl~~~~~  260 (383)
T d2ayna1         181 QEVKYLFTGLKLRLQEEITKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYELCT  260 (383)
T ss_dssp             SSCCBHHHHHHHTTEECCCCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGGGBC
T ss_pred             cccchhhhhhhhhhcccccccccccCcceeeeeeeeeecccceeeeeccceeecccCcceeecCcEEccCCeeechhhcc
Confidence            4456788887      356899999999999999999999999999999999964 366789999999999999999875


Q ss_pred             C
Q psy3162          78 S   78 (91)
Q Consensus        78 ~   78 (91)
                      .
T Consensus       261 ~  261 (383)
T d2ayna1         261 P  261 (383)
T ss_dssp             H
T ss_pred             h
Confidence            3

>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase 2, USP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 2, USP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=8.1e-09  Score=70.71  Aligned_cols=75  Identities=20%  Similarity=0.308  Sum_probs=60.0

Q ss_pred             CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCC
Q psy3162           5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDL   72 (91)
Q Consensus         5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDl   72 (91)
                      .+..+|.+|+           .+.++|..|...+.+.|...+.++|++|+||++||..+ ++...+....|.++ +.+||
T Consensus       187 ~~~~~l~~~l~~~~~~e~l~~~~~~~~~~~~~~~~~~k~~~~~~~P~~l~i~~~r~~~~-~~~~~~~~~~v~~~~~~~dl  265 (336)
T d2hd5a1         187 YPEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSES-RIRTSKLTTFVNFPLRDLDL  265 (336)
T ss_dssp             ---CBHHHHHHHHTSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEEECEECC-SSCCEECCCCCBCCSSCEEC
T ss_pred             CCCCCHHHHHHhcCCceEecCcccccccccccceeeEEEEEEeecccchhhhhhhhhhc-cccccccceeEeeccccccc
Confidence            4556788887           26789999999999999999999999999999999994 55556666777776 88999


Q ss_pred             CCCCCCCC
Q psy3162          73 TPLRGSGP   80 (91)
Q Consensus        73 s~~~~~g~   80 (91)
                      +++.+...
T Consensus       266 ~~~~~~~~  273 (336)
T d2hd5a1         266 REFASENT  273 (336)
T ss_dssp             GGGBSSSS
T ss_pred             cccccCCC
Confidence            99886543

>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase 8 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=9.1e-08  Score=66.03  Aligned_cols=74  Identities=18%  Similarity=0.272  Sum_probs=62.0

Q ss_pred             CCCCchhhhh-----------cCCcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCCCeeeecceEEecC-CCCCC
Q psy3162           5 QPTKSFLGLY-----------CGKVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKEDWTLAKLDVEVEMP-DTIDL   72 (91)
Q Consensus         5 ~~~~sl~~cl-----------~~~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~~~~~Kl~~~V~~P-~~LDl   72 (91)
                      .+..|+.+|+           .+.++|++|+.++.+.++..+..+|++|++|+.||..+ .+...+....+.|| ..+|+
T Consensus       198 ~~~~sl~~~l~~~~~~~~l~~~~~~~c~~c~~~~~~~~~~~~~~~p~~l~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  276 (348)
T d2gfoa1         198 TSKCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYD-GRWKQKLQTSVDFPLENLDL  276 (348)
T ss_dssp             SSEEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEEC-SSSEEECCCEEECCSSCBCC
T ss_pred             cccCcHHHHHHHhhhhcccccccceeccccCcceeeeEEEEEEeCCccceeceeeeecc-Cccceeeccccccccccccc
Confidence            4566788887           35678999999999999999999999999999999994 56677888888888 77998


Q ss_pred             CCCCCCC
Q psy3162          73 TPLRGSG   79 (91)
Q Consensus        73 s~~~~~g   79 (91)
                      +.+..++
T Consensus       277 ~~~~~~~  283 (348)
T d2gfoa1         277 SQYVIGP  283 (348)
T ss_dssp             GGGBCSC
T ss_pred             cceecCC
Confidence            8876543

>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin carboxyl-terminal hydrolase, UCH
domain: Ubiquitin carboxyl-terminal hydrolase 6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.36  E-value=1.2e-07  Score=66.01  Aligned_cols=61  Identities=13%  Similarity=0.144  Sum_probs=47.6

Q ss_pred             CcccCCCCCcceeEEEeecccCCCeeEEEeeceEECCC-CeeeecceEEecCCCCCCCCCCC
Q psy3162          17 KVLTYALDFVLSTLRTTRLASFPDYLMFHLKKFTMKED-WTLAKLDVEVEMPDTIDLTPLRG   77 (91)
Q Consensus        17 ~~~C~~C~~~~~a~k~~~~~~lP~vLiihlkRF~~~~~-~~~~Kl~~~V~~P~~LDls~~~~   77 (91)
                      ...|..|+....+.++..+.++|++|++||+||.++.. ....|++..|.||..||+.++..
T Consensus       183 ~~~~~~~~~~~~~~~~~~i~~~p~~l~i~l~R~~~~~~~~~~~k~~~~~~~~~~ld~~~~~~  244 (397)
T d1vjva_         183 EKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLT  244 (397)
T ss_dssp             --------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGGBC
T ss_pred             cccccccCCCceeeeeceeecCCceeEEEeeeeeeccccccccccCceeecCcEEecccccc
Confidence            45688888888888999999999999999999999754 67889999999999999988763